254781183

254781183

hypothetical protein CLIBASIA_05450

GeneID in NCBI database:8210208Locus tag:CLIBASIA_05450
Protein GI in NCBI database:254781183Protein Accession:YP_003065596.1
Gene range:-(1182088, 1182372)Protein Length:94aa
Gene description:hypothetical protein
COG prediction:none
KEGG prediction:hypothetical protein
SEED prediction:hypothetical protein
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQKWLPTKDINKAIGESQTKEEYFPSYEEFYLSKAS
cEEEEcccEEEEEEHHccccccccEEEcccccHHHcccccccEEEEEEcccccHHHHHHHHHccHHHHHHHHcccHHHHHHcccHHHHHHHccc
cEEEccccEEEEEccccccccccccccccccHHHHcccccccEEEEEEcccccHHHHHHHHccccHHHHHHHccccccccHcccHHHHEEcccc
mliwntskLSIFCRhcsqknpnygmchagvskeekagnmhptyavgicencgdlslmafqkwlptkdinkaigesqtkeeyfpsyeefylskas
MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQKWLPTKDINKAIgesqtkeeyfpsyEEFYLSKAS
MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQKWLPTKDINKAIGESQTKEEYFPSYEEFYLSKAS
*L****SKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQKWLPTKDINK*****QT*EEYFPSYEEFYLSK**
MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQKWLPTKDINKAIGESQTKEEYFPSYEEFYLSKAS
MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQKWLPTKDINKAIGESQTKEEYFPSYEEFYLSK**
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MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQKWLPTKDINKAIGESQTKEEYFPSYEEFYLSKAS

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target94 hypothetical protein CLIBASIA_05450 [Candidatus Liberib
315122553 246 hypothetical protein CKC_04025 [Candidatus Liberibacter 1 4e-07
>gi|315122553|ref|YP_004063042.1| hypothetical protein CKC_04025 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 246 Back     alignment and organism information
 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%)

Query: 1  MLIWNTSKLSIFCRHCSQKNPNYGMCHAGVSKEEKAGNMHPTYAVGICENCGDLSLMAFQ 60
          MLIW +S   I+  HC ++ P+Y M + GV+K  K  +    YAVG C +CG+LSL  F+
Sbjct: 1  MLIWESSDSDIWYGHCYEQKPSYDMSYVGVAKYIKDDDDLSAYAVGACRSCGNLSLFLFK 60

Query: 61 KWL 63
          + L
Sbjct: 61 EML 63


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

No hit with e-value below 0.005

Conserved Domains in CDD Database Detected by HHsearch

No hit with probability above 90.00


Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

No hit with probability above 90.00


Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

No hit with probability higher than 90.00