255764462
methionyl-tRNA formyltransferase
GeneID in NCBI database: | 8209278 | Locus tag: | CLIBASIA_00905 |
Protein GI in NCBI database: | 255764462 | Protein Accession: | YP_003064709.2 |
Gene range: | -(186224, 187156) | Protein Length: | 310aa |
Gene description: | methionyl-tRNA formyltransferase | ||
COG prediction: | [J] Methionyl-tRNA formyltransferase | ||
KEGG prediction: | fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] | ||
SEED prediction: | Methionyl-tRNA formyltransferase (EC 2.1.2.9) | ||
Pathway involved in KEGG: | One carbon pool by folate [PATH:las00670]
Aminoacyl-tRNA biosynthesis [PATH:las00970] | ||
Subsystem involved in SEED: | Translation initiation factors bacterial;
Conserved gene cluster associated with Met-tRNA formyltransferase | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 310 | methionyl-tRNA formyltransferase [Candidatus Liberibact | |||
254780570 | 205 | phosphoribosylglycinamide formyltransferase [Candi | 1e-06 | ||
254780911 | 288 | formyltetrahydrofolate deformylase [Candidatus Lib | 0.011 |
>gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 205 | Back alignment |
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Score = 45.1 bits (105), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 54 KAQEFSLPAL-VPTK--LGQEEYE-----QFLSFNADVAVVVAYGLVIPQRILNATKLGF 105 KA++ +P +P K + + E+E Q S D+ + Y ++ + + + K Sbjct: 48 KARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKI 107 Query: 106 YNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAG 165 N H SLLP + G +R + +G TG + + ++D GP+ VP+SS + Sbjct: 108 LNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESS 167 Query: 166 LQQEL 170 L Q++ Sbjct: 168 LSQKV 172 |
>gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate deformylase [Candidatus Liberibacter asiaticus str. psy62] Length = 288 | Back alignment |
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Score = 32.3 bits (72), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 18/113 (15%) Query: 50 AVHKK-AQEFSLP--ALVPTKLGQEEYEQFL-----SFNADVAVVVAYGLVIPQRILNAT 101 HKK + + LP L T+ + E EQ L N ++ ++ Y ++ + + Sbjct: 121 TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM 180 Query: 102 KLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKH-----LDTGPV 149 N H S LP ++GA P ++A E G+ I+ H LD GP+ Sbjct: 181 TGRIINIHHSFLPSFKGANPYKQAY-----EYGVKIIGATAHYAICELDAGPI 228 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 310 | methionyl-tRNA formyltransferase [Candidatus Liberibact | |||
315122857 | 302 | methionyl-tRNA formyltransferase [Candidatus Liberibact | 1 | 1e-131 | |
325291801 | 311 | methionyl-tRNA formyltransferase [Agrobacterium sp. H13 | 1 | 1e-102 | |
15887718 | 311 | methionyl-tRNA formyltransferase [Agrobacterium tumefac | 1 | 1e-100 | |
150395283 | 311 | methionyl-tRNA formyltransferase [Sinorhizobium medicae | 1 | 1e-99 | |
209547670 | 311 | methionyl-tRNA formyltransferase [Rhizobium leguminosar | 1 | 1e-99 | |
241202829 | 311 | methionyl-tRNA formyltransferase [Rhizobium leguminosar | 1 | 2e-99 | |
86356071 | 311 | methionyl-tRNA formyltransferase [Rhizobium etli CFN 42 | 1 | 4e-99 | |
15964173 | 311 | methionyl-tRNA formyltransferase [Sinorhizobium melilot | 1 | 7e-99 | |
116250202 | 319 | methionyl-tRNA formyltransferase [Rhizobium leguminosar | 1 | 7e-99 | |
190890087 | 311 | methionyl-tRNA formyltransferase [Rhizobium etli CIAT 6 | 1 | 8e-99 |
>gi|315122857|ref|YP_004063346.1| methionyl-tRNA formyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 302 | Back alignment and organism information |
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Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 220/303 (72%), Positives = 261/303 (86%), Gaps = 1/303 (0%) Query: 8 MGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTK 67 MGTSEFAVATL+AL SSSH+I++VYTQPPRPAGRRGLK+V SAV++ A E ++ L+P K Sbjct: 1 MGTSEFAVATLRAL-SSSHNILAVYTQPPRPAGRRGLKTVPSAVYQTANELNIQTLIPEK 59 Query: 68 LGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIM 127 L Q EYEQFL+FNADVAVVV+YGL+IP+RIL+ATKLGFYNGHASLLPRWRGAAPIQRAIM Sbjct: 60 LRQAEYEQFLNFNADVAVVVSYGLIIPKRILDATKLGFYNGHASLLPRWRGAAPIQRAIM 119 Query: 128 AGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAMDKLEQ 187 AGD+ETGIA+MKMD+HLDTGP+ ++++PI N++ L LS++CA +VE MD+LE Sbjct: 120 AGDSETGIAVMKMDEHLDTGPIVLVKRIPIPCNMSAGVLHDALSIMCASTIVEVMDRLEN 179 Query: 188 NNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMMIGNKHER 247 NN+ SPQ+ENGITYA+KI K ET ++F +S+E+VHNHIRALSP PGAWL MMI N+ ER Sbjct: 180 NNISFSPQVENGITYAQKILKSETHIDFSQSSEDVHNHIRALSPLPGAWLNMMIRNRLER 239 Query: 248 IKLLESQLVEGEGKPGEVINPNFTIACSQGAVRIMRLQRAGGRVLDIGDFLLGCPVIIGC 307 IKLLESQLVEG G PGE+IN NFTIACSQGA+RIMRLQRAGG LDI DFLLG P I+GC Sbjct: 240 IKLLESQLVEGNGHPGEIINSNFTIACSQGAIRIMRLQRAGGHALDIKDFLLGYPAIVGC 299 Query: 308 IVG 310 IVG Sbjct: 300 IVG 302 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|325291801|ref|YP_004277665.1| methionyl-tRNA formyltransferase [Agrobacterium sp. H13-3] Length = 311 | Back alignment and organism information |
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>gi|15887718|ref|NP_353399.1| methionyl-tRNA formyltransferase [Agrobacterium tumefaciens str. C58] Length = 311 | Back alignment and organism information |
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>gi|150395283|ref|YP_001325750.1| methionyl-tRNA formyltransferase [Sinorhizobium medicae WSM419] Length = 311 | Back alignment and organism information |
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>gi|209547670|ref|YP_002279587.1| methionyl-tRNA formyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 311 | Back alignment and organism information |
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>gi|241202829|ref|YP_002973925.1| methionyl-tRNA formyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 311 | Back alignment and organism information |
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>gi|86356071|ref|YP_467963.1| methionyl-tRNA formyltransferase [Rhizobium etli CFN 42] Length = 311 | Back alignment and organism information |
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>gi|15964173|ref|NP_384526.1| methionyl-tRNA formyltransferase [Sinorhizobium meliloti 1021] Length = 311 | Back alignment and organism information |
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>gi|116250202|ref|YP_766040.1| methionyl-tRNA formyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 319 | Back alignment and organism information |
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>gi|190890087|ref|YP_001976629.1| methionyl-tRNA formyltransferase [Rhizobium etli CIAT 652] Length = 311 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 310 | methionyl-tRNA formyltransferase [Candidatus Liberibact | ||
PRK00005 | 309 | PRK00005, fmt, methionyl-tRNA formyltransferase; Review | 1e-106 | |
TIGR00460 | 313 | TIGR00460, fmt, methionyl-tRNA formyltransferase | 2e-61 | |
PLN02285 | 334 | PLN02285, PLN02285, methionyl-tRNA formyltransferase | 2e-40 | |
PRK08125 | 660 | PRK08125, PRK08125, bifunctional UDP-glucuronic acid de | 1e-27 | |
PRK06988 | 312 | PRK06988, PRK06988, putative formyltransferase; Provisi | 9e-18 | |
COG0223 | 307 | COG0223, Fmt, Methionyl-tRNA formyltransferase [Transla | 6e-89 | |
KOG3082 | 338 | KOG3082, KOG3082, KOG3082, Methionyl-tRNA formyltransfe | 4e-28 | |
KOG2452 | 881 | KOG2452, KOG2452, KOG2452, Formyltetrahydrofolate dehyd | 1e-21 | |
pfam00551 | 181 | pfam00551, Formyl_trans_N, Formyl transferase | 2e-27 | |
TIGR00639 | 190 | TIGR00639, PurN, phosphoribosylglycinamide formyltransf | 3e-07 | |
pfam02911 | 99 | pfam02911, Formyl_trans_C, Formyl transferase, C-termin | 2e-21 | |
COG0299 | 200 | COG0299, PurN, Folate-dependent phosphoribosylglycinami | 3e-10 | |
KOG3076 | 206 | KOG3076, KOG3076, KOG3076, 5'-phosphoribosylglycinamide | 8e-08 | |
PRK05647 | 200 | PRK05647, purN, phosphoribosylglycinamide formyltransfe | 5e-07 |
>gnl|CDD|178787 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed | Back alignment and domain information |
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>gnl|CDD|161888 TIGR00460, fmt, methionyl-tRNA formyltransferase | Back alignment and domain information |
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>gnl|CDD|177923 PLN02285, PLN02285, methionyl-tRNA formyltransferase | Back alignment and domain information |
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>gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
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>gnl|CDD|180785 PRK06988, PRK06988, putative formyltransferase; Provisional | Back alignment and domain information |
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>gnl|CDD|30572 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|38292 KOG3082, KOG3082, KOG3082, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|37663 KOG2452, KOG2452, KOG2452, Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase | Back alignment and domain information |
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>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent | Back alignment and domain information |
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>gnl|CDD|145851 pfam02911, Formyl_trans_C, Formyl transferase, C-terminal domain | Back alignment and domain information |
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>gnl|CDD|30647 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|38286 KOG3076, KOG3076, KOG3076, 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|180182 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 310 | methionyl-tRNA formyltransferase [Candidatus Liberibact | ||
PRK00005 | 309 | fmt methionyl-tRNA formyltransferase; Reviewed | 100.0 | |
COG0223 | 307 | Fmt Methionyl-tRNA formyltransferase [Translation, ribo | 100.0 | |
PRK06988 | 313 | putative formyltransferase; Provisional | 100.0 | |
PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP-4-am | 100.0 | |
TIGR00460 | 385 | fmt methionyl-tRNA formyltransferase; InterPro: IPR0057 | 100.0 | |
KOG2452 | 881 | consensus | 100.0 | |
KOG3082 | 338 | consensus | 100.0 | |
pfam00551 | 181 | Formyl_trans_N Formyl transferase. This family includes | 100.0 | |
PRK05647 | 200 | purN phosphoribosylglycinamide formyltransferase; Revie | 100.0 | |
TIGR00639 | 215 | PurN phosphoribosylglycinamide formyltransferase; Inter | 99.97 | |
COG0299 | 200 | PurN Folate-dependent phosphoribosylglycinamide formylt | 99.96 | |
PRK06027 | 285 | purU formyltetrahydrofolate deformylase; Reviewed | 99.93 | |
PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 99.92 | |
PRK13011 | 287 | formyltetrahydrofolate deformylase; Reviewed | 99.92 | |
KOG3076 | 206 | consensus | 99.9 | |
TIGR00655 | 294 | PurU formyltetrahydrofolate deformylase; InterPro: IPR0 | 99.83 | |
COG0788 | 287 | PurU Formyltetrahydrofolate hydrolase [Nucleotide trans | 99.8 | |
PRK07579 | 245 | hypothetical protein; Provisional | 100.0 | |
pfam02911 | 99 | Formyl_trans_C Formyl transferase, C-terminal domain. | 99.89 | |
pfam01408 | 120 | GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossman | 95.75 | |
COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [Inorg | 94.18 | |
PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 94.1 | |
PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 93.47 | |
pfam00185 | 155 | OTCace Aspartate/ornithine carbamoyltransferase, Asp/Or | 92.74 | |
KOG2741 | 351 | consensus | 91.95 | |
TIGR03590 | 280 | PseG pseudaminic acid biosynthesis-associated protein P | 91.09 | |
TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). | 90.75 | |
COG0673 | 342 | MviM Predicted dehydrogenases and related proteins [Gen | 90.75 | |
pfam03807 | 93 | F420_oxidored NADP oxidoreductase coenzyme F420-depende | 90.64 | |
PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 90.22 | |
PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 94.6 | |
COG3804 | 350 | Uncharacterized conserved protein related to dihydrodip | 93.07 | |
pfam00148 | 398 | Oxidored_nitro Nitrogenase component 1 type Oxidoreduct | 91.69 | |
cd03466 | 429 | Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of th | 94.53 | |
PRK09496 | 455 | trkA potassium transporter peripheral membrane componen | 94.16 | |
PRK00048 | 265 | dihydrodipicolinate reductase; Provisional | 93.69 | |
PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 93.5 | |
CHL00194 | 319 | ycf39 Ycf39; Provisional | 90.9 | |
KOG1502 | 327 | consensus | 93.23 |
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed | Back alignment and domain information |
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>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK06988 putative formyltransferase; Provisional | Back alignment and domain information |
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>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
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>TIGR00460 fmt methionyl-tRNA formyltransferase; InterPro: IPR005794 Methionyl-tRNA formyltransferase (2 | Back alignment and domain information |
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>KOG2452 consensus | Back alignment and domain information |
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>KOG3082 consensus | Back alignment and domain information |
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>pfam00551 Formyl_trans_N Formyl transferase | Back alignment and domain information |
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>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed | Back alignment and domain information |
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>TIGR00639 PurN phosphoribosylglycinamide formyltransferase; InterPro: IPR004607 This family describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins found in formyltransferase | Back alignment and domain information |
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>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] | Back alignment and domain information |
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>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
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>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
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>PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
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>KOG3076 consensus | Back alignment and domain information |
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>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised | Back alignment and domain information |
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>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>PRK07579 hypothetical protein; Provisional | Back alignment and domain information |
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>pfam02911 Formyl_trans_C Formyl transferase, C-terminal domain | Back alignment and domain information |
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>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold | Back alignment and domain information |
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>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
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>PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
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>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain | Back alignment and domain information |
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>KOG2741 consensus | Back alignment and domain information |
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>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
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>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
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>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
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>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent | Back alignment and domain information |
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>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
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>PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
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>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
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>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase | Back alignment and domain information |
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>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE | Back alignment and domain information |
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>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
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>PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
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>PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
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>CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
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>KOG1502 consensus | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 310 | methionyl-tRNA formyltransferase [Candidatus Liberibact | ||
1fmt_A | 314 | Methionyl-Trnafmet Formyltransferase From Escherich | 3e-49 | |
3r8x_A | 318 | Crystal Structure Of Methionyl-Trna Formyltransfera | 2e-46 | |
3rfo_A | 317 | Crystal Structure Of Methyionyl-Trna Formyltransfer | 1e-41 | |
3q0i_A | 318 | Methionyl-Trna Formyltransferase From Vibrio Choler | 1e-40 | |
2bln_A | 305 | N-Terminal Formyltransferase Domain Of Arna In Comp | 1e-22 | |
1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 1e-22 | |
1yrw_A | 302 | Crystal Structure Of E.Coli Arna Transformylase Dom | 9e-22 | |
1s3i_A | 310 | Crystal Structure Of The N Terminal Hydrolase Domai | 1e-19 | |
2bw0_A | 329 | Crystal Structure Of The Hydrolase Domain Of Human | 7e-18 |
>gi|2914332|pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli Length = 314 | Back alignment and structure |
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 179/316 (56%), Gaps = 13/316 (4%) Query: 2 TLRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLP 61 +LR++F GT +FA L AL+SS H++V V+TQP RPAG RG K + S V A+E LP Sbjct: 3 SLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAG-RGKKLMPSPVKVLAEEKGLP 61 Query: 62 ALVPTKLGQEEYEQFLSFNA-DVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAA 120 P L +E +Q ++ DV VVVAYGL++P+ +L +LG N H SLLPRWRGAA Sbjct: 62 VFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAA 121 Query: 121 PIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVE 180 PIQR++ AGD ETG+ IM+MD LDTG + + PI++ + L +L+ L ++ Sbjct: 122 PIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLIT 181 Query: 181 AMDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMM 240 + +L Q E +TYAEK+SK E R+++ SA + IRA +P+P +WLE+ Sbjct: 182 TLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEIE 241 Query: 241 IGNKHERIKLLESQLVE--GEGKPGEVI---NPNFTIACSQGAVRIMRLQRAGGRVLDIG 295 + +K+ ++ +++ PG ++ +A G + ++ LQ AG + + Sbjct: 242 G----QPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQ 297 Query: 296 DFLLGCP--VIIGCIV 309 D L + G + Sbjct: 298 DLLNSRREWFVPGNRL 313 |
>gi|328877395|pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From Yersinia Pestis Complexed With L-Methionine Length = 318 | Back alignment and structure |
>gi|329666301|pdb|3RFO|A Chain A, Crystal Structure Of Methyionyl-Trna Formyltransferase From Bacillus Anthracis Length = 317 | Back alignment and structure |
>gi|315583678|pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae Length = 318 | Back alignment and structure |
>gi|66361563|pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex With N-5-Formyltetrahydrofolate And Ump Length = 305 | Back alignment and structure |
gi|71042200|pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
>gi|66361188|pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain Length = 302 | Back alignment and structure |
>gi|42543697|pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of 10- Formyltetrahydrofolate Dehydrogenase Length = 310 | Back alignment and structure |
>gi|73536304|pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10- Formyltetrahydrofolate 2 Dehydrogenase Length = 329 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 310 | methionyl-tRNA formyltransferase [Candidatus Liberibact | ||
1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrolase; H | 1e-88 | |
1fmt_A | 314 | Methionyl-tRNA FMet formyltransferase; initiator tRNA, | 2e-79 | |
2bw0_A | 329 | 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nuc | 3e-38 | |
2bln_A | 305 | Protein YFBG; transferase, formyltransferase, L-ARA4N b | 4e-34 | |
1jkx_A | 212 | GART;, phosphoribosylglycinamide formyltransferase; pur | 1e-22 | |
1meo_A | 209 | Phosophoribosylglycinamide formyltransferase; purine bi | 2e-22 | |
3kcq_A | 215 | Phosphoribosylglycinamide formyltransferase; structural | 6e-21 | |
3nrb_A | 287 | Formyltetrahydrofolate deformylase; N-terminal ACT doma | 2e-17 | |
3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transferase, | 9e-16 | |
2ywr_A | 216 | Phosphoribosylglycinamide formyltransferase; rossmann f | 1e-13 | |
3da8_A | 215 | Probable 5'-phosphoribosylglycinamide formyltransferase | 2e-13 | |
1zgh_A | 260 | Methionyl-tRNA formyltransferase; southeast collaborato | 4e-21 | |
3lou_A | 292 | Formyltetrahydrofolate deformylase; structural genomics | 1e-20 | |
3obi_A | 288 | Formyltetrahydrofolate deformylase; structural genomics | 6e-19 | |
3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural genomics | 6e-19 |
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
---|
Score = 321 bits (825), Expect = 1e-88 Identities = 70/312 (22%), Positives = 141/312 (45%), Gaps = 13/312 (4%) Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62 ++ V + ++AL+++ + I +++T P G K+ +V + A E +P Sbjct: 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNP----GEKAFYGSVARLAAERGIPV 56 Query: 63 LVPTKL-GQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAP 121 P + E+ + DV Y +I IL G +N H SLLP++RG AP Sbjct: 57 YAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAP 116 Query: 122 IQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEA 181 + ++ G+ ETG+ + +M K D G + ++ I+ + L +L + + Sbjct: 117 LNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQT 176 Query: 182 MDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALS-PFPGAWLEMM 240 + ++ N+ Q EN T + + ++ + + + A +HN +RA++ P+PGA+ + Sbjct: 177 LPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYV- 235 Query: 241 IGNKHERIKLLESQLVE--GEGKPGEVINPN-FTIACSQGAVRIMRLQRAGGRVLDIGDF 297 +++ + S++ + +PG VI+ IAC GA+ I+ Q G + Sbjct: 236 ---GNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEIVTGQAGDGITMQGSQL 292 Query: 298 LLGCPVIIGCIV 309 ++ G + Sbjct: 293 AQTLGLVQGSRL 304 |
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* Length = 314 | Back alignment and structure |
---|
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Length = 329 | Back alignment and structure |
---|
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Length = 305 | Back alignment and structure |
---|
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 | Back alignment and structure |
---|
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 | Back alignment and structure |
---|
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} Length = 215 | Back alignment and structure |
---|
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287 | Back alignment and structure |
---|
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286 | Back alignment and structure |
---|
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 | Back alignment and structure |
---|
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 | Back alignment and structure |
---|
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP: b.46.1.1 c.65.1.1 Length = 260 | Back alignment and structure |
---|
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} Length = 292 | Back alignment and structure |
---|
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288 | Back alignment and structure |
---|
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 310 | methionyl-tRNA formyltransferase [Candidatus Liberibact | ||
1fmt_A | 314 | Methionyl-tRNA FMet formyltransferase; initiator tRNA, | 100.0 | |
1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrolase; H | 100.0 | |
2bw0_A | 329 | 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nuc | 100.0 | |
2bln_A | 305 | Protein YFBG; transferase, formyltransferase, L-ARA4N b | 100.0 | |
1zgh_A | 260 | Methionyl-tRNA formyltransferase; southeast collaborato | 100.0 | |
1jkx_A | 212 | GART;, phosphoribosylglycinamide formyltransferase; pur | 100.0 | |
3kcq_A | 215 | Phosphoribosylglycinamide formyltransferase; structural | 100.0 | |
3da8_A | 215 | Probable 5'-phosphoribosylglycinamide formyltransferase | 100.0 | |
2ywr_A | 216 | Phosphoribosylglycinamide formyltransferase; rossmann f | 100.0 | |
1meo_A | 209 | Phosophoribosylglycinamide formyltransferase; purine bi | 100.0 | |
3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural genomics | 100.0 | |
3nrb_A | 287 | Formyltetrahydrofolate deformylase; N-terminal ACT doma | 100.0 | |
3lou_A | 292 | Formyltetrahydrofolate deformylase; structural genomics | 100.0 | |
3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transferase, | 100.0 | |
3obi_A | 288 | Formyltetrahydrofolate deformylase; structural genomics | 100.0 | |
3euw_A | 344 | MYO-inositol dehydrogenase; protein structure initiativ | 97.21 | |
3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO- | 97.04 | |
3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural genomics | 96.86 | |
3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, MCSG | 96.85 | |
3ezy_A | 344 | Dehydrogenase; structural genomics, unknown function, P | 96.69 | |
3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel, rin | 96.47 | |
1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; KTN d | 96.19 | |
3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural genomic | 96.02 | |
2o4u_X | 334 | Dimeric dihydrodiol dehydrogenase; NADP-binding rossman | 95.81 | |
1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural genomic | 95.8 | |
3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI-2, p | 95.58 | |
3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural genomic | 95.55 | |
1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM homolog) | 95.5 | |
3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural genomic | 95.49 | |
3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; structura | 95.41 | |
1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-chain de | 95.4 | |
3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreducta | 95.2 | |
1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; HET: N | 94.96 | |
1ydw_A | 362 | AX110P-like protein; structural genomics, protein struc | 94.95 | |
3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, structural | 94.84 | |
3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI- | 94.82 | |
3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro linke | 94.79 | |
3ic5_A | 118 | Putative saccharopine dehydrogenase; structural genomic | 94.76 | |
2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; reductive methylat | 94.63 | |
1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, HAEM d | 94.62 | |
2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural genomi | 94.39 | |
3db2_A | 354 | Putative NADPH-dependent oxidoreductase; ZP_01370612.1, | 94.09 | |
2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, short | 94.0 | |
1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics consor | 93.96 | |
3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, short-c | 93.27 | |
1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, joint cent | 93.22 | |
2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-cha | 93.12 | |
2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, join | 92.94 | |
2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogenase/re | 92.57 | |
3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding, ros | 92.44 | |
2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65 | 92.19 | |
1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, structural | 92.17 | |
1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogenase, g | 92.07 | |
1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, l | 92.04 | |
3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2, NYS | 91.22 | |
1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural genomics, | 91.11 | |
1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/ | 90.81 | |
2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structural ge | 90.81 | |
1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, shor | 90.5 | |
2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural genomics, | 90.04 | |
1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, structural | 95.64 | |
3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, | 94.32 | |
3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, iso | 93.87 | |
3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, PSI- | 93.84 | |
3ius_A | 286 | Uncharacterized conserved protein; APC63810, silicibact | 93.46 | |
3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, csgid, | 93.21 | |
1vpd_A | 299 | Tartronate semialdehyde reductase; structural genomics, | 92.95 | |
2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrroline red | 92.68 | |
3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural geno | 92.59 | |
1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhi | 92.31 | |
2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CI | 92.19 | |
3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent e | 91.78 | |
3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogen | 91.65 | |
1qgu_B | 519 | Protein (nitrogenase molybdenum iron protein); biologic | 91.5 | |
3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics, oxi | 90.94 | |
3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural genomics | 90.84 | |
2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, bio | 90.28 | |
3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural genomic | 94.0 | |
2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, N | 92.56 | |
2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, stru | 91.95 |
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=590.78 Aligned_cols=303 Identities=39% Similarity=0.673 Sum_probs=289.1 Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCH-HHHHHCC Q ss_conf 706999779868899999999679849999827578227578756789889999985997997024344200-2342104 Q gi|255764462|r 2 TLRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQEEY-EQFLSFN 80 (310) Q Consensus 2 ~mkI~f~G~~~~~~~~l~~l~~~~~~i~~vvt~~d~~~~~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~-~~l~~~~ 80 (310) +|||+||||++||+++|++|++++++|++|||+||++.| |+.+...++++++|+++|||+++++++++++. +.+++++ T Consensus 3 ~mkI~f~Gs~~~a~~~L~~L~~~~~~i~~VvT~pd~~~g-rg~~~~~~~v~~~A~~~~i~~~~~~~~~~~~~~~~~~~~~ 81 (314) T 1fmt_A 3 SLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAG-RGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQ 81 (314) T ss_dssp CCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCCCBC-------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTT T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC T ss_conf 628999889889999999999789977999909998556-8884889979999998599840352346288999998519 Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCC Q ss_conf 57313202421124430012110010102322210332002444431034545432022012332034542014543332 Q gi|255764462|r 81 ADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSN 160 (310) Q Consensus 81 ~D~~v~~~~~~ii~~~il~~~~~g~iN~H~s~LP~yRG~~pi~wai~~g~~~~g~t~~~~~~~~D~G~Ii~q~~~~I~~~ 160 (310) +|++++++|+++||+++|+.|++|+||+|||+||+|||++|++|||+|||+++|+|+|+|++++|+|||++|++++|.++ T Consensus 82 ~dl~i~~~~~~iip~~~l~~~~~g~iN~H~slLP~yRG~~pi~wail~g~~~~Gvti~~~~~~~D~G~Ii~q~~~~i~~~ 161 (314) T 1fmt_A 82 ADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAE 161 (314) T ss_dssp CSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTT T ss_pred CCEEEEEECCCCCCHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCC T ss_conf 99999971264699999857897778255554777667588999997799753159999626756777147899630456 Q ss_pred CCHHHHHHCCCCCCHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 21011000002330112232000000024655678830001112221122221024568888875431276654248994 Q gi|255764462|r 161 INTAGLQQELSVLCAHAMVEAMDKLEQNNLPLSPQIENGITYAEKISKGETRVNFCRSAENVHNHIRALSPFPGAWLEMM 240 (310) Q Consensus 161 ~t~~~L~~kl~~~~~~ll~~~l~~i~~g~~~~~~Q~~~~~sy~~k~~~~d~~Idw~~~a~~I~n~iRA~~P~PgA~~~~~ 240 (310) +|+.+|+++++..+..++.+++..+.+++.++++|+++.+|||||++++|++|||+++|++|+|+||||+||||||+.+ T Consensus 162 ~t~~~L~~k~~~~~~~ll~~~l~~l~~~~~~~~~Q~~~~aty~~ki~~~d~~Idw~~~a~~I~~~iRA~~p~pga~~~~- 240 (314) T 1fmt_A 162 DTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEI- 240 (314) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCCGGGCCBCCCCCHHHHBCCTTSBHHHHHHHHHHTTTTTCEEEEE- T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCCHHHHEECHHHHHHHHHHHHCCCCCCCCCCEEC- T ss_conf 5389999998764215668899998669964173898776367878888900158679999977321658999722104- Q ss_pred ECCCCEEEEEEEEEECCC--CCCCCEEE---ECCEEEEECCCEEEEEEEECCCCCCCCHHHHHCCCC--CCCCCCC Q ss_conf 058514667886565178--88873797---488799807986999988548697124889964799--9988407 Q gi|255764462|r 241 IGNKHERIKLLESQLVEG--EGKPGEVI---NPNFTIACSQGAVRIMRLQRAGGRVLDIGDFLLGCP--VIIGCIV 309 (310) Q Consensus 241 ~~~~~~~iki~~~~~~~~--~~~pG~I~---~~~l~V~c~dG~i~I~~lq~~Gkk~m~a~df~ng~~--~~~G~~l 309 (310) +++++++++++..+. .++||+|+ +++++|+|+||+|+|.+||+||||+|+|.||+||++ +.+|++| T Consensus 241 ---~g~~ikI~~~~~~~~~~~~~PG~i~~~~~~~l~V~c~dG~l~I~~lq~eGKk~m~a~df~ng~r~~~~~G~~l 313 (314) T 1fmt_A 241 ---EGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRL 313 (314) T ss_dssp ---TTEEEEEEEEEEECCCCCSCTTBEEEEETTEEEEECSBSEEEEEEEEETTSCCEEHHHHHHHSGGGSCTTCBC T ss_pred ---CCCEEEEEEEEEECCCCCCCCCEEEEECCCEEEEEECCEEEEECEEECCCCCEEEHHHHHCCCCCCCCCCCEE T ss_conf ---8966999999993477899996899977983999979839997889999999822999962897658997993 |
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
---|
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A | Back alignment and structure |
---|
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A | Back alignment and structure |
---|
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP: b.46.1.1 c.65.1.1 | Back alignment and structure |
---|
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* | Back alignment and structure |
---|
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} | Back alignment and structure |
---|
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* | Back alignment and structure |
---|
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} | Back alignment and structure |
---|
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* | Back alignment and structure |
---|
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
---|
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} | Back alignment and structure |
---|
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} | Back alignment and structure |
---|
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} | Back alignment and structure |
---|
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas palustris} | Back alignment and structure |
---|
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
---|
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
---|
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} | Back alignment and structure |
---|
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
---|
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
---|
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
---|
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
---|
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
---|
>2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* | Back alignment and structure |
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>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
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>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
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>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
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>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
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>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
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>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
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>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
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>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
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>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
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>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
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>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
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>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
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>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
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>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
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>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; reductive methylation, structural genomics, PSI 2, protein structure initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A | Back alignment and structure |
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>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
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>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
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>3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
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>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
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>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
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>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
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>1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
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>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
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>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
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>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* | Back alignment and structure |
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>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
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>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
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>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, JCSG, protein structure initiative, PSI; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
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>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
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>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
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>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
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>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.90A {Neisseria meningitidis MC58} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
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>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
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>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoreductase, structural genomics consortium; HET: NAP; 2.30A {Plasmodium falciparum 3D7} | Back alignment and structure |
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>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, lyase; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
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>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
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>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genomics, joint center for structural genomics, JCSG; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
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>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
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>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
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>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
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>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
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>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
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>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
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>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P)binding protein, rossmann fold; HET: NAP; 2.15A {Streptococcus pyogenes m1 gas} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
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>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
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>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
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>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
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>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
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>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
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>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B* | Back alignment and structure |
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>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate biosynthesis, PSI-2; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
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>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
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>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
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>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative; 2.19A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
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>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.00A {Pyrococcus horikoshii OT3} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
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>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
310 | methionyl-tRNA formyltransferase [Candidatus Liberibact | |||
d1fmta2 | 206 | c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase | 3e-32 | |
d2bw0a2 | 203 | c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogen | 5e-25 | |
d2blna2 | 203 | c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N | 1e-24 | |
d1jkxa_ | 209 | c.65.1.1 (A:) Glycinamide ribonucleotide transformylase | 9e-11 | |
d1zgha2 | 164 | c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase | 5e-16 | |
d2bw0a1 | 104 | b.46.1.1 (A:204-307) 10-formyltetrahydrofolate dehydrog | 1e-15 | |
d1fmta1 | 108 | b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransfera | 1e-14 | |
d2blna1 | 101 | b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA, | 4e-12 |
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562] Score = 132 bits (332), Expect = 3e-32 Identities = 82/203 (40%), Positives = 114/203 (56%) Query: 3 LRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPA 62 LR++F GT +FA L AL+SS H++V V+TQP RPAGR ++ Sbjct: 4 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF 63 Query: 63 LVPTKLGQEEYEQFLSFNADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPI 122 + QE + ADV VVVAYGL++P+ +L +LG N H SLLPRWRGAAPI Sbjct: 64 QPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPI 123 Query: 123 QRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAGLQQELSVLCAHAMVEAM 182 QR++ AGD ETG+ IM+MD LDTG + + PI++ + L +L+ L ++ + Sbjct: 124 QRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTL 183 Query: 183 DKLEQNNLPLSPQIENGITYAEK 205 +L Q E +TYAEK Sbjct: 184 KQLADGTAKPEVQDETLVTYAEK 206 |
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
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>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 203 | Back information, alignment and structure |
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>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209 | Back information, alignment and structure |
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>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Length = 164 | Back information, alignment and structure |
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>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate dehydrogenase domain 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
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>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
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>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA, domain 2 {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 310 | methionyl-tRNA formyltransferase [Candidatus Liberibact | ||
d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia coli | 100.0 | |
d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal domain {E | 100.0 | |
d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 {Human | 100.0 | |
d1jkxa_ | 209 | Glycinamide ribonucleotide transformylase, GART {Escher | 100.0 | |
d1meoa_ | 205 | Glycinamide ribonucleotide transformylase, GART {Human | 100.0 | |
d1zgha2 | 164 | Methionyl-tRNAfmet formyltransferase {Clostridium therm | 99.97 | |
d1fmta1 | 108 | Methionyl-tRNAfmet formyltransferase, C-terminal domain | 99.93 | |
d2blna1 | 101 | Polymyxin resistance protein ArnA, domain 2 {Escherichi | 99.91 | |
d2bw0a1 | 104 | 10-formyltetrahydrofolate dehydrogenase domain 2 {Human | 99.88 | |
d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2 | 96.38 | |
d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Arabido | 95.66 | |
d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) [Tax | 95.37 | |
d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galactose 4 | 95.31 | |
d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 562]} | 94.58 | |
d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId | 93.47 | |
d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis | 93.44 | |
d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. | 93.37 | |
d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [TaxId | 93.24 | |
d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archa | 92.93 | |
d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococcus p | 92.6 | |
d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria menin | 92.15 | |
d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain {Zym | 91.68 | |
d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galactose 4 | 91.61 | |
d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 9037 | 90.28 | |
d1zgha1 | 62 | Methionyl-tRNAfmet formyltransferase, C-terminal domain | 96.27 | |
d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacter | 92.56 | |
d1qh8b_ | 519 | Nitrogenase iron-molybdenum protein, beta chain {Klebsi | 91.96 |
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=0 Score=360.73 Aligned_cols=203 Identities=45% Similarity=0.722 Sum_probs=192.5 Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCC-HHHHHHCC Q ss_conf 70699977986889999999967984999982757822757875678988999998599799702434420-02342104 Q gi|255764462|r 2 TLRVVFMGTSEFAVATLQALVSSSHSIVSVYTQPPRPAGRRGLKSVLSAVHKKAQEFSLPALVPTKLGQEE-YEQFLSFN 80 (310) Q Consensus 2 ~mkI~f~G~~~~~~~~l~~l~~~~~~i~~vvt~~d~~~~~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~-~~~l~~~~ 80 (310) ||||+|+|+++||..+|++|++++++|++|+|.||++.+ ++.......+..+|.++++|++..+..+++. .+.+++.+ T Consensus 3 ~mKI~f~G~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (206) T d1fmta2 3 SLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAG-RGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQ 81 (206) T ss_dssp CCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCCCBC-------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTT T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 748999889889999999999689977999969983013-6762233623210100376532222222114677776413 Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCC Q ss_conf 57313202421124430012110010102322210332002444431034545432022012332034542014543332 Q gi|255764462|r 81 ADVAVVVAYGLVIPQRILNATKLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSN 160 (310) Q Consensus 81 ~D~~v~~~~~~ii~~~il~~~~~g~iN~H~s~LP~yRG~~pi~wai~~g~~~~g~t~~~~~~~~D~G~Ii~q~~~~I~~~ 160 (310) +|++++++|+++||+++|+.|++|+||+|||+||+|||++|++|||+||++++|+|+|+|++++|+|||++|++++|.++ T Consensus 82 ~d~~v~~~~~~ii~~~il~~~k~g~iN~Hps~LP~yRG~~pi~wai~nge~~~GvT~h~i~~~iD~G~Ii~q~~~~i~~~ 161 (206) T d1fmta2 82 ADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAE 161 (206) T ss_dssp CSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTT T ss_pred CEEEEEECCCCCCCHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCEECEEEEEECCCCCHHHHHHHHCCCCCCC T ss_conf 32788641221366546753877745258235676520001325887498235306888615557577643001344335 Q ss_pred CCHHHHHHCCCCCCHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 210110000023301122320000000246556788300011122 Q gi|255764462|r 161 INTAGLQQELSVLCAHAMVEAMDKLEQNNLPLSPQIENGITYAEK 205 (310) Q Consensus 161 ~t~~~L~~kl~~~~~~ll~~~l~~i~~g~~~~~~Q~~~~~sy~~k 205 (310) ||+.+|++++..++.+++.++++.+.+|++++++|+++.+|||+| T Consensus 162 dt~~~l~~k~~~~~~~l~~~~i~~i~~~~~~~~~Q~~~~atY~~K 206 (206) T d1fmta2 162 DTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEK 206 (206) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCCGGGCCBCCC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC T ss_conf 659999999999999999999999984998426599987878999 |
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
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>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate dehydrogenase domain 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
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>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
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>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
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>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
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