peg_1073
| GeneID in NCBI database: | Locus tag: | ||
| Protein GI in NCBI database: | not defined in NCBI database | Protein Accession: | |
| Gene range: | -(1138874, 1139362) | Protein Length: | 162aa |
| Gene description: | |||
| COG prediction: | none | ||
| KEGG prediction: | not defined in KEGG | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 162 | ||||
| 315122533 | 331 | hypothetical protein CKC_03925 [Candidatus Liberibacter | 1 | 6e-80 | |
| 227822441 | 331 | putative phage major head protein [Sinorhizobium fredii | 1 | 9e-60 | |
| 150397033 | 331 | hypothetical protein Smed_1830 [Sinorhizobium medicae W | 1 | 8e-58 | |
| 227821704 | 123 | putative phage related protein [Sinorhizobium fredii NG | 1 | 1e-39 | |
| 160897389 | 306 | putative phage major head protein [Delftia acidovorans | 1 | 6e-11 | |
| 221199511 | 317 | major head protein [Burkholderia multivorans CGD2M] Len | 1 | 2e-10 | |
| 291334595 | 316 | putative phage major head protein [uncultured phage Med | 1 | 7e-09 | |
| 288817864 | 291 | putative phage major head protein [Hydrogenobacter ther | 1 | 2e-07 | |
| 283856246 | 304 | putative phage major head protein [Zymomonas mobilis su | 1 | 8e-07 | |
| 163783849 | 291 | hypothetical protein HG1285_12862 [Hydrogenivirga sp. 1 | 1 | 2e-06 |
| >gi|315122533|ref|YP_004063022.1| hypothetical protein CKC_03925 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 331 | Back alignment and organism information |
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Score = 300 bits (767), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 141/161 (87%), Positives = 148/161 (91%)
Query: 1 MTKKAKDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYA 60
MTKKAKDG QR F+KQ+LD VMQEGYQNG NFRHI+VSPYVKSEFVRFMSDSNVASFRYA
Sbjct: 170 MTKKAKDGAQRPFTKQLLDAVMQEGYQNGANFRHIVVSPYVKSEFVRFMSDSNVASFRYA 229
Query: 61 TSGKSHNNTIVATADIYDRPFGKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHE 120
S S NNTIVATADIYD PFGKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLR I E
Sbjct: 230 VSDNSKNNTIVATADIYDGPFGKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRNIQE 289
Query: 121 DKNIAKNGDANKGVLIGEGALKVRNEKAVGVVADLFGLSKT 161
DKNIAK GDANKGVLIGEG LKV+NEKA+GV++DLFGLSKT
Sbjct: 290 DKNIAKTGDANKGVLIGEGTLKVKNEKAIGVISDLFGLSKT 330
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Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|227822441|ref|YP_002826413.1| putative phage major head protein [Sinorhizobium fredii NGR234] Length = 331 | Back alignment and organism information |
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| >gi|150397033|ref|YP_001327500.1| hypothetical protein Smed_1830 [Sinorhizobium medicae WSM419] Length = 331 | Back alignment and organism information |
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| >gi|227821704|ref|YP_002825674.1| putative phage related protein [Sinorhizobium fredii NGR234] Length = 123 | Back alignment and organism information |
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| >gi|160897389|ref|YP_001562971.1| putative phage major head protein [Delftia acidovorans SPH-1] Length = 306 | Back alignment and organism information |
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| >gi|221199511|ref|ZP_03572555.1| major head protein [Burkholderia multivorans CGD2M] Length = 317 | Back alignment and organism information |
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| >gi|291334595|gb|ADD94245.1| putative phage major head protein [uncultured phage MedDCM-OCT-S04-C136] Length = 316 | Back alignment and organism information |
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| >gi|288817864|ref|YP_003432211.1| putative phage major head protein [Hydrogenobacter thermophilus TK-6] Length = 291 | Back alignment and organism information |
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| >gi|283856246|ref|YP_162122.2| putative phage major head protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 304 | Back alignment and organism information |
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| >gi|163783849|ref|ZP_02178828.1| hypothetical protein HG1285_12862 [Hydrogenivirga sp. 128-5-R1-1] Length = 291 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
No hit with probability above 90.00
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 162 | |||
| 1ohg_A_ | 282 | Major capsid protein; virus, virus coat protein, v | 96.21 |
| >1ohg_A (A:) Major capsid protein; virus, virus coat protein, virus/viral protein, auto- catalytic cross-LINK, icosahedral virus; 3.45A {Bacteriophage HK97} | Back alignment and structure |
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Probab=96.21 E-value=0.091 Score=30.58 Aligned_cols=130 Identities=10% Similarity=0.006 Sum_probs=88.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCEEEE
Q ss_conf 78886531789999999999976998348999499999999861243113454214677655415556789971842679
Q 537021.9.peg.1 6 KDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVM 85 (162)
Q Consensus 6 t~GT~~~lTE~~l~~~lq~i~~~GG~~~~i~v~p~~K~~is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~sdfG~v~ 85 (162)
+.......+.+.+.+++.++..++.++..++++|.....+.++-....++--. ....+.. ..+-.++
T Consensus 143 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~vm~~~~~~~l~~lkd~~g~~l~~--~~~~~~~-----------~~l~G~p 209 (282)
T 1ohg_A 143 SLNATGDTRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIFG--GPQAFTS-----------NIMWGLP 209 (282)
T ss_dssp GGCCTTCCHHHHHHHHHHHTGGGTSCCCEEEECHHHHHHHHTCBCTTSCBTTT--TTTSCCC-----------SEETTEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHEECCCCCEEEC--CCCCCCC-----------CEECCEE
T ss_conf 11235654146799999867644566755998053644565212689966531--3455776-----------4035703
Q ss_pred EEECCCCCCCCCCCEEEEEECHHHEEEEECCCCCEECCCCCCC------CCEEEEEEEEEEEEEECHHHCEEEEC
Q ss_conf 9825656887644205999846454531027642000136678------82267999998758708000689974
Q 537021.9.peg.1 86 VHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAKNG------DANKGVLIGEGALKVRNEKAVGVVAD 154 (162)
Q Consensus 86 ivpnr~~~~~~~~~~~~~ilD~~~~~~~~Lr~~~~~e~laktG------D~~k~~i~~E~tL~~~n~~a~g~I~d 154 (162)
|+.+..||.+ ++++.|+....+-+.|.-...+ ....+ +.....+...+...+.+|+|..++..
T Consensus 210 V~~~~~~~~~-----~~~~gd~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~a~~~~~~ 278 (282)
T 1ohg_A 210 VVPTKAQAAG-----TFTVGGFDMASQVWDRMDATVE-VSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTF 278 (282)
T ss_dssp EEECTTSCTT-----EEEEECHHHHEEEEESEEEEEE-EESSSTTCTTTTEEEEEEEEEECEEESCGGGEEEEEC
T ss_pred EEECCCCCCC-----EEEEEECCCEEEEEEECCCEEE-EECCCCHHHHCCEEEEEEEEEEEEEEECCCEEEEEEE
T ss_conf 7871788766-----0688504441799991240899-9505410655890999999998437706882999998
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