peg_1101

peg_1101

GeneID in NCBI database:Locus tag:
Protein GI in NCBI database:not defined in NCBI databaseProtein Accession:
Gene range:-(1159972, 1160085)Protein Length:37aa
Gene description:
COG prediction:none
KEGG prediction:not defined in KEGG
SEED prediction:hypothetical protein
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
  
--------10--------20--------30-------
VLKKSLDWIYFGDEMIIPKKLECSSDLNHVSYLSLAK
cccccccEEEEcccEEcccccccccccccEEEEEEcc
cccccccEEEEcccEEccccccccccccHHHHHHccc
vlkksldwiyfgdemiipkklecssdlnhvsylslak
vlkksldwiyfgdemiipkklecssdlnhvsylslak
VLKKSLDWIYFGDEMIIPKKLECSSDLNHVSYLSLAK
**KKSLDWIYFGDEMIIPKKLECSSDLNHVSYLSLA*
VLKKSLDWIYFGDEMIIPKKLECSSDLNHVSYLSLAK
*LKKSLDWIYFGDEMIIPKKLECSSDLNHVSYLSLA*
ooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ooooooooooooooooooooooooooooooooooooo
oooooooooooooohhhhhhhhhhhhhhhhhhhhiii
ooooooooooooooooohhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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VLKKSLDWIYFGDEMIIPKKLECSSDLNHVSYLSLAK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

IdentityAlignment graphLength Definition E-value
Target37
254781218205 hypothetical protein CLIBASIA_05625 [Candidatus Li 1e-05
>gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter asiaticus str. psy62] Length = 205 Back     alignment
 Score = 39.3 bits (90), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 19/22 (86%)

Query: 1   VLKKSLDWIYFGDEMIIPKKLE 22
           V KK LDWIYFGDE+I+PK ++
Sbjct: 164 VTKKHLDWIYFGDEVIVPKSIK 185

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

No hits with e-value below 0.005 within the first 2 iteration


Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

No hit with e-value below 0.005

Conserved Domains in CDD Database Detected by HHsearch

No hit with probability above 90.00


Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

No hit with probability above 90.00


Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

No hit with probability higher than 90.00