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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

X: Rubredoxin-like

binds one zinc with two CxxC motifs on two beta-hairpins

H: Rubredoxin-related
T: Rubredoxin-related
F: Ribosomal_L32p

PF01783 CL0167

Representatives:

e2j0151[5:2-60] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e8c9601[0:1-56] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e8c9701[0:24-56] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e8fizBM1[BM:2-57] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e8g6wz1[z:2-57] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L32 ; ligands: MG ; ELECTRON MICROSCOPY

e8g6xz1[z:2-57] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L32 ; ligands: MG ; ELECTRON MICROSCOPY

e8g6yz1[z:2-57] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L32 ; ligands: MG ; ELECTRON MICROSCOPY

e7uvvZ1[Z:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e7uvwZ1[Z:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e7uvxZ1[Z:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e7uvyZ1[Z:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e7uvzZ1[Z:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e7uw1Z1[Z:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e7ztaL3211[L321:2-57] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e8buu01[0:2-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ligands: ZN ; ELECTRON MICROSCOPY

e8fomR51[R5:2-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ligands: MG ; X-RAY DIFFRACTION 3.400Å

e8fomY51[Y5:2-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ligands: MG ; X-RAY DIFFRACTION 3.400Å

e8fonR51[R5:2-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ligands: ZN ; X-RAY DIFFRACTION 3.500Å

e8fonY51[Y5:2-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ligands: MG,ZN ; X-RAY DIFFRACTION 3.500Å

e8fr881[8:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e7xamb1[b:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L32 ; ligands: MG ; ELECTRON MICROSCOPY

e7y41b1[b:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e8c9301[0:5-55] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ELECTRON MICROSCOPY

e8crxz1[z:2-31] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ligands: ZN ; ELECTRON MICROSCOPY

e8cvmz1[z:2-31] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ligands: ZN ; ELECTRON MICROSCOPY

e8crxz2[z:29-63] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ligands: ZN ; ELECTRON MICROSCOPY

e8cvmz2[z:29-63] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L32 ; ligands: ZN ; ELECTRON MICROSCOPY

e8e30Q1[Q:2-57] Image Pymol Jmol Links: PDB, SCOP, CATH

; ELECTRON MICROSCOPY

e8cgkz1[z:2-55] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: MG ; ELECTRON MICROSCOPY

e8ceuz1[z:2-56] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: K,MG ; ELECTRON MICROSCOPY

e8cgvz1[z:2-57] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: MG ; ELECTRON MICROSCOPY

e8syl41[4:2-56] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: MG ; ELECTRON MICROSCOPY

e8bf7a1[a:2-56] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e7y7cz1[z:2-57] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: MG ; ELECTRON MICROSCOPY

e8fc1151[15:2-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG,ZN ; X-RAY DIFFRACTION 2.500Å

e8t8b151[15:2-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG,ZN ; X-RAY DIFFRACTION 2.650Å

e8fc4151[15:2-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG,ZN ; X-RAY DIFFRACTION 2.450Å

e8ev6151[15:2-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: MG,ZN ; X-RAY DIFFRACTION 2.946Å

e8apoAz1[Az:76-147] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

Previous

e2qam01[0:1-56] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4v1951[5:79-188] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MITORIBOSOMAL PROTEIN BL32M, MRPL32 ; ligands: ZN ; ELECTRON MICROSCOPY

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

T: Hypothetical protein Ta0289-C

insertion in the CxxC motif

X: RING/U-box-like

binds two zincs. one in the same way as rubredoxin, probably related to rubredoxin. the other in a similar way as glucocorticoid receptor

X: Glucocorticoid receptor-like

binds zinc with one beta-hairpin and one helix, the helix binds DNA

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes