ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3aq0E1 - ECOD Domain | ECOD

ECOD/Domains/e3aq0E1

e3aq0E1

UID: 000410218

PDB

Range: E:8-347
PDB: 3AQ0 chain E(all domains)
UniProt: Q5HZ00 (all domains)
Gene: SPS3

Molecule: Geranyl diphosphate synthase

3D Structure

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Related Domains

Browse other domains in polyprenyl_synt →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTerpenoid synthases(141)

HH-groupTerpenoid synthases(141.1)

TT-groupTerpenoid synthases(141.1.1)

FFamilypolyprenyl_synt(141.1.1.1)

Ligands

in contact, ≤ 4 Å

Farnesyl diphosphateFPP
drugDrugBank DB07780
Pyrophosphoric acidPPV
drugDrugBank DB04160
Magnesium ion

Pfam Families

PF00348polyprenyl_synt

Polyprenyl synthetase

ClanCL0613Terp_synthase

External Links

ECOD PDB View: 3AQ0 RCSB PDB: 3AQ0 PDBe: 3AQ0 UniProt: Q5HZ00

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.