F-group (family)

1.1.2.4 Molydop_binding

Open in classification tree →Pfam PF01568 →

Ligands and drugs

647

Member domains

218

with ligand contacts (≤ 4 Å)

33.7% of members

193

with DrugDomain annotations

29.8% of members

with a DrugBank compound

7.1% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 1.1.2.4 belongs to X-group 1 cradle loop barrel, which binds 9.4 ligand superclasses per 20 proteins, broader than 87% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB02078	PG5	Triglyme	8
DB04137	GTP	Guanosine-5'-Triphosphate	3
DB03328	MOS	Dioxo(sulfanyl)molybdenum	2
DB04315	GDP	Guanosine-5'-Diphosphate	2
DB12529	NO2	Nitrite	2
DB18509	AST	Arsenite ion	2

Most frequently bound compounds

PDB ligand	Name	Domains in contact
MGD	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	188
4MOmetal	MOLYBDENUM(IV) ION	70
MD1	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER	24
SF4	IRON/SULFUR CLUSTER	23
PGD	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	16
MOmetal	MOLYBDENUM ATOM	12
NAmetal	SODIUM ION	8
PG5	1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE	8
2MD	GUANYLATE-O'-PHOSPHORIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	4
CAmetal	CALCIUM ION	4
FC6	HEXACYANOFERRATE(3-)	4
HGmetal	MERCURY (II) ION	4
Wmetal	TUNGSTEN ION	4
CL	CHLORIDE ION	3
CO2	CARBON DIOXIDE	3
GTP	GUANOSINE-5'-TRIPHOSPHATE	3
GDP	GUANOSINE-5'-DIPHOSPHATE	2
MOS	DIOXOTHIOMOLYBDENUM(VI) ION	2
NO2	NITRITE ION	2
SO3	SULFITE ION	2