F-group (family)
10.12.1.4 dTDP_sugar_isom
Ligands and drugs
178
Member domains
98
with ligand contacts (≤ 4 Å)
55.1% of members
98
with DrugDomain annotations
55.1% of members
76
with a DrugBank compound
42.7% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 10.12.1.4 belongs to X-group 10 jelly-roll, which binds 8.5 ligand superclasses per 20 proteins, broader than 66% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04315 | GDP | Guanosine-5'-Diphosphate | 25 |
| DB03103 | TYD | Thymidine-5'- Diphosphate | 12 |
| DB03723 | TRH | 2'-Deoxy-thymidine-beta-L-rhamnose | 10 |
| DB03161 | TDX | Thymidine-5'-diphospho-beta-D-xylose | 4 |
| DB14756 | SRT | meso-Tartaric acid | 4 |
| DB01643 | TMP | Thymidine monophosphate | 2 |
| DB02549 | ATY | 3'-O-Acetylthymidine-5'-diphosphate | 2 |
| DB03389 | XYS | alpha-D-Xylopyranose | 2 |
| DB03462 | TDR | Thymine | 2 |
| DB03751 | DAU | 2'deoxy-Thymidine-5'-Diphospho-Alpha-D-Glucose | 2 |
| DB04485 | THM | Thymidine | 2 |
| DB03095 | TMA | Tetramethylammonium | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| GDP | GUANOSINE-5'-DIPHOSPHATE | 25 |
| CL | CHLORIDE ION | 15 |
| TYD | THYMIDINE-5'-DIPHOSPHATE | 11 |
| TRH | 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE | 10 |
| YO7 | [(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4R,5R,6S)-6-[(1R)-1,2-dihydroxyethyl]-3,4,5-trihydroxyoxan-2-yl dihydrogen diphosphate (non-preferred name) | 6 |
| NAmetal | SODIUM ION | 5 |
| 18T | [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-methyltetrahydro-2H-pyran-2-yl dihydrogen diphosphate | 4 |
| NImetal | NICKEL (II) ION | 4 |
| SRT | S,R MESO-TARTARIC ACID | 4 |
| TDO | DTDP-4-KETO-L-RHAMNOSE | 4 |
| TDX | THYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE | 4 |
| CAmetal | CALCIUM ION | 3 |
| CYT | 6-AMINOPYRIMIDIN-2(1H)-ONE | 3 |
| ATY | 3'-O-ACETYLTHYMIDINE-5'-DIPHOSPHATE | 2 |
| DAU | 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE | 2 |
| GDD | GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE | 2 |
| Kmetal | POTASSIUM ION | 2 |
| TDR | THYMINE | 2 |
| THM | THYMIDINE | 2 |
| TMP | THYMIDINE-5'-PHOSPHATE | 2 |