F-group (family)
2003.1.5.13 Spermine_synth
Ligands and drugs
560
Member domains
181
with ligand contacts (≤ 4 Å)
32.3% of members
179
with DrugDomain annotations
32.0% of members
127
with a DrugBank compound
22.7% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2003.1.5.13 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02282 | MTA | 5'-S-methyl-5'-thioadenosine | 68 |
| DB03566 | SPD | Spermidine | 22 |
| DB00127 | SPM | Spermine | 15 |
| DB02995 | HAI | Cyclohexylammonium Ion | 8 |
| DB01917 | PUT | Putrescine | 6 |
| DB02844 | AAT | S-Adenosyl-1,8-Diamino-3-Thiooctane | 6 |
| DB02676 | B3P | 2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol | 3 |
| DB00118 | SAM | Ademetionine | 2 |
| DB00640 | ADN | Adenosine | 2 |
| DB03345 | BME | Mercaptoethanol | 2 |
| DB01752 | SAH | S-adenosyl-L-homocysteine | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MTA | 5'-DEOXY-5'-METHYLTHIOADENOSINE | 68 |
| S4M | 5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINE | 53 |
| SPD | SPERMIDINE | 22 |
| SPM | SPERMINE | 15 |
| AG3 | 1-{4-[(3-aminopropyl)amino]butyl}guanidine | 9 |
| HAI | CYCLOHEXYLAMMONIUM ION | 8 |
| JFQ | trans-N-(3-aminopropyl)cyclohexane-1,4-diamine | 7 |
| AAT | S-ADENOSYL-1,8-DIAMINO-3-THIOOCTANE | 6 |
| PUT | 1,4-DIAMINOBUTANE | 6 |
| TER | N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE | 5 |
| 4JV | 5-[(4-methylbenzyl)oxy]quinazoline-2,4-diamine | 4 |
| 4JW | (2S)-N-methyl-N-phenyl-2,3-dihydro-1,4-benzodioxine-2-carboxamide | 4 |
| 4K2 | quinolin-8-yl piperidine-1-carboxylate | 4 |
| 8OF | N-(4-methoxyphenyl)quinolin-4-amine | 4 |
| 8QO | 5-methoxy-2-[(5R)-5-methyl-4,5-dihydro-1H-imidazol-2-yl]phenol | 4 |
| BSX | 2-(2-fluorophenyl)ethanamine | 4 |
| DSH | 5'-S-(3-aminopropyl)-5'-thioadenosine | 4 |
| UNX | UNKNOWN ATOM OR ION | 4 |
| 2MH | cis-4-methylcyclohexanamine | 3 |
| 4MN | 4-METHYLANILINE | 3 |