F-group (family)
2004.1.1.107 DnaB_C
Ligands and drugs
291
Member domains
194
with ligand contacts (≤ 4 Å)
66.7% of members
169
with DrugDomain annotations
58.1% of members
148
with a DrugBank compound
50.9% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2004.1.1.107 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02930 | AGS | Adenosine 5'-[gamma-thio]triphosphate | 48 |
| DB02452 | TTP | Thymidine 5'-triphosphate | 45 |
| DB04444 | ALF | Tetrafluoroaluminate Ion | 29 |
| DB16833 | ADP | Adenosine disphosphate | 28 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 18 |
| DB03103 | TYD | Thymidine-5'- Diphosphate | 1 |
| DB03222 | DTP | dATP | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 138 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 51 |
| AGS | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | 48 |
| TTP | THYMIDINE-5'-TRIPHOSPHATE | 45 |
| ALF | TETRAFLUOROALUMINATE ION | 36 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 18 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 11 |
| CAmetal | CALCIUM ION | 7 |
| 08T | [[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium | 6 |
| AUmetal | GOLD ION | 2 |
| DTP | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE | 1 |
| TYD | THYMIDINE-5'-DIPHOSPHATE | 1 |