ECOD
F-group (family)

2004.1.1.43 SRP54

Open in classification tree →Pfam PF00448 →

Ligands and drugs

550
Member domains
157
with ligand contacts (≤ 4 Å)
28.5% of members
154
with DrugDomain annotations
28.0% of members
135
with a DrugBank compound
24.5% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2004.1.1.43 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB02082GNPPhosphoaminophosphonic acid guanylate ester48
DB04315GDPGuanosine-5'-Diphosphate37
DB03725GCP5'-Guanylylmethylenebisphosphonate16
DB01972GGuanosine-5'-Monophosphate14
DB04444ALFTetrafluoroaluminate Ion12
DB04022G4PGuanosine tetraphosphate5
DB00131AMPAdenosine phosphate4
DB04137GTPGuanosine-5'-Triphosphate1
DB09140OXYOxygen1

Most frequently bound compounds

PDB ligandNameDomains in contact
MGmetalMAGNESIUM ION88
GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER47
GDPGUANOSINE-5'-DIPHOSPHATE39
GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER16
ALFTETRAFLUOROALUMINATE ION12
KmetalPOTASSIUM ION8
5GPGUANOSINE-5'-MONOPHOSPHATE6
CDmetalCADMIUM ION6
G4PGUANOSINE-5',3'-TETRAPHOSPHATE6
NAmetalSODIUM ION5
AF3ALUMINUM FLUORIDE4
AMPADENOSINE MONOPHOSPHATE4
CAmetalCALCIUM ION4
IODIODIDE ION4
MRD(4R)-2-METHYLPENTANE-2,4-DIOL4
0O2guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)3
4MEmethyl 1H-indole-4-carboxylate2
CLCHLORIDE ION2
F9Y1H-indole-6-carbonitrile2
GXY4-bromo-2,5-dimethoxyaniline2