ECOD
F-group (family)

2004.1.1.53 Adenylsucc_synt

Open in classification tree →Pfam PF00709 →

Ligands and drugs

929
Member domains
80
with ligand contacts (≤ 4 Å)
8.6% of members
79
with DrugDomain annotations
8.5% of members
78
with a DrugBank compound
8.4% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2004.1.1.53 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB04315GDPGuanosine-5'-Diphosphate32
DB04566IMPInosinic Acid25
DB02109HDAHadacidin24
DB03510IMO6-O-Phosphoryl Inosine Monophosphate10
DB00171ATPATP8
DB04137GTPGuanosine-5'-Triphosphate8
DB04457DGP2'-Deoxyguanosine-5'-Monophosphate7
DB00131AMPAdenosine phosphate5
DB00128ASPAspartic acid2
DB02493H5PHydantocidin-5'-phosphate2
DB02623GNHAminophosphonic acid-guanylate ester2
DB03146PGS2-deazo-6-thiophosphate guanosine-5'-monophosphate2
DB03345BMEMercaptoethanol2
DB03725GCP5'-Guanylylmethylenebisphosphonate2
DB03909ACPAdenosine-5'-[Beta, Gamma-Methylene]Triphosphate2
DB044182SAAdenylosuccinic acid2
DB05540—Alanosine2
DB02082GNPPhosphoaminophosphonic acid guanylate ester1
DB02580PG6Pentaglyme1
DB02666RPD(C8-R)-hydantocidin 5'-phosphate1

Most frequently bound compounds

PDB ligandNameDomains in contact
MGmetalMAGNESIUM ION36
GDPGUANOSINE-5'-DIPHOSPHATE33
IMPINOSINIC ACID27
HDAHADACIDIN23
IMO6-O-PHOSPHORYL INOSINE MONOPHOSPHATE9
ATPADENOSINE-5'-TRIPHOSPHATE8
DGP2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE7
GTPGUANOSINE-5'-TRIPHOSPHATE7
AMPADENOSINE MONOPHOSPHATE5
CLCHLORIDE ION5
CAmetalCALCIUM ION4
NAmetalSODIUM ION3
ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER2
BMEBETA-MERCAPTOETHANOL2
DOI9-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-6-(PHOSPHONOOXY)-9H-PURINE2
GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER2
GNHAMINOPHOSPHONIC ACID-GUANYLATE ESTER2
H5PHYDANTOCIDIN-5'-PHOSPHATE2
PGS2-DEAZO-6-THIOPHOSPHATE GUANOSINE-5'-MONOPHOSPHATE2
2SA2-[9-(3,4-DIHYDROXY-5-PHOSPHONOOXYMETHYL-TETRAHYDRO-FURAN-2-YL)-9H-PURIN-6-YLAMINO]-SUCCINIC ACID1