ECOD
F-group (family)

2008.1.1.27 RAI1

Open in classification tree →Pfam PF08652 →

Ligands and drugs

104
Member domains
32
with ligand contacts (≤ 4 Å)
30.8% of members
26
with DrugDomain annotations
25.0% of members
14
with a DrugBank compound
13.5% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2008.1.1.27 belongs to X-group 2008 Restriction endonuclease-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 52% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB01812A3PAdenosine 3',5'-diphosphate2
DB04160PPVPyrophosphoric acid2
DB01992COACoenzyme A1
DB024899MG9-Methylguanine1
DB02714U3P3'-Uridinemonophosphate1
DB03958GTG7-methyl-guanosine-5'-triphosphate-5'-guanosine1
DB04315GDPGuanosine-5'-Diphosphate1

Most frequently bound compounds

PDB ligandNameDomains in contact
MGmetalMAGNESIUM ION14
CAmetalCALCIUM ION5
MNmetalMANGANESE (II) ION5
0WD[[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate3
UBG[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)3
A3PADENOSINE-3'-5'-DIPHOSPHATE2
PPVPYROPHOSPHATE2
UBDURIDINE 3',5'-BIS(DIHYDROGEN PHOSPHATE)2
9MG9-METHYLGUANINE1
COACOENZYME A1
GDPGUANOSINE-5'-DIPHOSPHATE1
GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE1
U3P3'-URIDINEMONOPHOSPHATE1