T-group (topology)
239.1.1 Ribosomal protein L25-like
Ligands and drugs
3,683
Member domains
476
with ligand contacts (≤ 4 Å)
12.9% of members
317
with DrugDomain annotations
8.6% of members
35
with a DrugBank compound
1.0% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 239.1.1 belongs to X-group 239 Ribosomal protein L25-like, which binds 5.2 ligand superclasses per 20 proteins, narrower than 80% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00142 | — | Glutamic acid | 2 |
| DB02510 | — | 5'-O-(L-Prolylsulfamoyl)adenosine | 2 |
| DB02684 | — | 5'-O-(L-Cysteinylsulfamoyl)adenosine | 2 |
| DB03566 | SPD | Spermidine | 2 |
| DB00171 | ATP | ATP | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 412 |
| OHX | osmium (III) hexammine | 58 |
| CL | CHLORIDE ION | 8 |
| Kmetal | POTASSIUM ION | 5 |
| SPM | SPERMINE | 4 |
| COmetal | COBALT (II) ION | 3 |
| MNmetal | MANGANESE (II) ION | 3 |
| NAmetal | SODIUM ION | 3 |
| SPD | SPERMIDINE | 3 |
| UNX | UNKNOWN ATOM OR ION | 3 |
| CDmetal | CADMIUM ION | 2 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 1 |
| CSmetal | CESIUM ION | 1 |
| WVK | (2E)-N-(pyrimidin-2-yl)-3-(thiophen-2-yl)prop-2-enamide | 1 |