F-group (family)
2484.1.1.34 DNA_pol_B_exo1
Ligands and drugs
484
Member domains
161
with ligand contacts (≤ 4 Å)
33.3% of members
131
with DrugDomain annotations
27.1% of members
52
with a DrugBank compound
10.7% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2484.1.1.34 belongs to X-group 2484 Ribonuclease H-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 77% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02452 | TTP | Thymidine 5'-triphosphate | 6 |
| DB03222 | DTP | dATP | 6 |
| DB02857 | GMP | Guanosine | 5 |
| DB01972 | 5GP | Guanosine-5'-Monophosphate | 3 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 3 |
| DB04447 | DTT | 1,4-Dithiothreitol | 3 |
| DB02181 | DGT | 2'-Deoxyguanosine-5'-Triphosphate | 2 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 2 |
| DB00171 | ATP | ATP | 1 |
| DB00242 | — | Cladribine | 1 |
| DB00536 | GAI | Guanidine | 1 |
| DB00631 | — | Clofarabine | 1 |
| DB01073 | — | — | 1 |
| DB01280 | — | — | 1 |
| DB04457 | DGP | 2'-Deoxyguanosine-5'-Monophosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CAmetal | CALCIUM ION | 87 |
| MGmetal | MAGNESIUM ION | 24 |
| NAmetal | SODIUM ION | 8 |
| MNmetal | MANGANESE (II) ION | 7 |
| GMP | GUANOSINE | 5 |
| 3DR | 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE | 4 |
| XG4 | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine | 4 |
| 5GP | GUANOSINE-5'-MONOPHOSPHATE | 3 |
| DTT | 2,3-DIHYDROXY-1,4-DITHIOBUTANE | 3 |
| 5CY | 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-yl}-3,3-dimethyl-3H-indolium | 2 |
| A1AC6 | 2-(4-bromophenyl)-N-(3-methoxy-4-{[(4S)-2-oxo-1,3-oxazolidin-4-yl]methyl}phenyl)acetamide | 2 |
| CL | CHLORIDE ION | 2 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 2 |
| N5P | 1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO-1H-INDOLE | 2 |
| YE4 | N-(4-chlorobenzyl)-1-methyl-6-(morpholinomethyl)-4-oxo-1,4-dihydroquinoline-3-carboxamide | 2 |
| DGP | 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE | 1 |
| GAI | GUANIDINE | 1 |
| Kmetal | POTASSIUM ION | 1 |
| NImetal | NICKEL (II) ION | 1 |
| ZNmetal | ZINC ION | 1 |