F-group (family)
2490.2.1.1 Ribosomal_L13
Ligands and drugs
3,241
Member domains
917
with ligand contacts (≤ 4 Å)
28.3% of members
411
with DrugDomain annotations
12.7% of members
24
with a DrugBank compound
0.7% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2490.2.1.1 belongs to X-group 2490 Ribosomal protein L13/L15p/L18e/L32e, which binds 4.9 ligand superclasses per 20 proteins, narrower than 84% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00161 | VAL | Valine | 6 |
| DB03566 | SPD | Spermidine | 4 |
| DB02494 | — | (S)-3-phenyllactic acid | 1 |
| DB03685 | U | Uridine monophosphate | 1 |
| DB04729 | LLL | Gentamicin C1a | 1 |
| DB05636 | YMZ | (+)-Mefloquine | 1 |
| DB07374 | — | — | 1 |
| DB08437 | — | Puromycin | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 812 |
| OHX | osmium (III) hexammine | 78 |
| NAmetal | SODIUM ION | 68 |
| CL | CHLORIDE ION | 66 |
| SPM | SPERMINE | 33 |
| SRmetal | STRONTIUM ION | 28 |
| SPD | SPERMIDINE | 13 |
| UNX | UNKNOWN ATOM OR ION | 7 |
| MNmetal | MANGANESE (II) ION | 6 |
| Kmetal | POTASSIUM ION | 5 |
| 8UZ | TC007 | 2 |
| NMY | NEOMYCIN | 2 |
| PAR | PAROMOMYCIN | 2 |
| LLL | (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL | 1 |
| PUT | 1,4-DIAMINOBUTANE | 1 |
| YMZ | (11R,12S)- Mefloquine | 1 |