F-group (family)
2500.1.1.2 Ribonuc_red_lgC
Ligands and drugs
433
Member domains
248
with ligand contacts (≤ 4 Å)
57.3% of members
123
with DrugDomain annotations
28.4% of members
119
with a DrugBank compound
27.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2500.1.1.2 belongs to X-group 2500 Ten stranded beta/alpha barrel, which binds 8.0 ligand superclasses per 20 proteins, broader than 55% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02452 | TTP | Thymidine 5'-triphosphate | 47 |
| DB03222 | DTP | dATP | 39 |
| DB04555 | CDP | Cytidine-5'-Diphosphate | 22 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 17 |
| DB02181 | DGT | 2'-Deoxyguanosine-5'-Triphosphate | 15 |
| DB16833 | ADP | Adenosine disphosphate | 9 |
| DB03435 | UDP | Uridine-5'-Diphosphate | 7 |
| DB00640 | ADN | Adenosine | 2 |
| DB00145 | GLY | Glycine | 1 |
| DB00171 | ATP | ATP | 1 |
| DB00242 | — | Cladribine | 1 |
| DB00441 | — | Gemcitabine | 1 |
| DB00631 | — | Clofarabine | 1 |
| DB01005 | — | Hydroxyurea | 1 |
| DB01073 | — | — | 1 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 1 |
| DB05003 | — | — | 1 |
| DB05420 | — | — | 1 |
| DB06433 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| TTP | THYMIDINE-5'-TRIPHOSPHATE | 139 |
| MGmetal | MAGNESIUM ION | 113 |
| DTP | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE | 62 |
| CDP | CYTIDINE-5'-DIPHOSPHATE | 30 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 17 |
| DGT | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | 15 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 10 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 9 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 7 |
| UDP | URIDINE-5'-DIPHOSPHATE | 7 |
| CL | CHLORIDE ION | 6 |
| DAT | 2'-DEOXYADENOSINE-5'-DIPHOSPHATE | 4 |
| 5AD | 5'-DEOXYADENOSINE | 3 |
| B12 | COBALAMIN | 3 |
| ADN | ADENOSINE | 2 |
| E4X | 4-bromo-N-((1S,2R)-2-(naphthalen-1-yl)-1-(5-oxo-4,5-dihydro-1,3,4-oxadiazol-2-yl)propyl)benzenesulfonamide | 2 |
| E6O | 5-chloro-2-(N-((1S,2R)-2-(2,3-dihydro-1H-inden-4-yl)-1-(5-oxo-4,5-dihydro-1,3,4-oxadiazol-2-yl)propyl)sulfamoyl)benzamide | 2 |
| EJ6 | 5-chloro-N-((1S,2R)-2-(6-fluoro-2,3-dimethylphenyl)-1-(5-oxo-4,5-dihydro-1,3,4-oxadiazol-2-yl)propyl)-4-methyl-3,4-dihydro-2H-benzo[b][1,4]oxazine-8-sulfonamide | 2 |
| GLY | GLYCINE | 2 |
| 2A5 | 2'-deoxy-2'-(2-hydroxyethyl)adenosine 5'-(trihydrogen diphosphate) | 1 |