T-group (topology)
304.109.1 Ribosomal proteins S24e, L23 and L15e
Ligands and drugs
5,248
Member domains
1,617
with ligand contacts (≤ 4 Å)
30.8% of members
640
with DrugDomain annotations
12.2% of members
30
with a DrugBank compound
0.6% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 304.109.1 belongs to X-group 304 Alpha-beta plaits, which binds 8.8 ligand superclasses per 20 proteins, broader than 75% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03566 | SPD | Spermidine | 10 |
| DB00161 | VAL | Valine | 6 |
| DB00127 | SPM | Spermine | 1 |
| DB02494 | — | (S)-3-phenyllactic acid | 1 |
| DB04729 | LLL | Gentamicin C1a | 1 |
| DB07374 | — | — | 1 |
| DB08437 | — | Puromycin | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 1,489 |
| OHX | osmium (III) hexammine | 141 |
| NAmetal | SODIUM ION | 135 |
| Kmetal | POTASSIUM ION | 107 |
| SPD | SPERMIDINE | 71 |
| CL | CHLORIDE ION | 69 |
| SRmetal | STRONTIUM ION | 60 |
| SPM | SPERMINE | 35 |
| UNX | UNKNOWN ATOM OR ION | 12 |
| PAR | PAROMOMYCIN | 6 |
| GET | GENETICIN | 3 |
| MNmetal | MANGANESE (II) ION | 3 |
| PUT | 1,4-DIAMINOBUTANE | 3 |
| LLL | (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL | 2 |
| 84G | Arbekacin | 1 |