ECOD
F-group (family)

316.1.1.24 DNA_pol_B_thumb,DNA_pol_B_palm

Open in classification tree →Pfam PF14791,PF14792 →

Ligands and drugs

779
Member domains
578
with ligand contacts (≤ 4 Å)
74.2% of members
560
with DrugDomain annotations
71.9% of members
349
with a DrugBank compound
44.8% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 316.1.1.24 belongs to X-group 316 Nucleotidyltransferase-like, which binds 7.3 ligand superclasses per 20 proteins, narrower than 56% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB04160PPVPYROPHOSPHATE100
DB01965DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE39
DB03258DCP2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE37
DB02452TTPTHYMIDINE-5'-TRIPHOSPHATE36
DB03222DTP2'-DEOXYADENOSINE 5'-TRIPHOSPHATE27
DB02181DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE20
DB03085GOAGLYCOLIC ACID15
DB03798DC2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE9
DB04447DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE6
DB04005UTPURIDINE 5'-TRIPHOSPHATE5
DB00171ATPADENOSINE-5'-TRIPHOSPHATE4
DB02175MLAMALONIC ACID4
DB02431CTPCYTIDINE-5'-TRIPHOSPHATE4
DB02883DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE2
DB04137GTPGUANOSINE-5'-TRIPHOSPHATE2
DB14078MDNMETHYLENEDIPHOSPHONIC ACID2
DB00515CPTCisplatin1
DB00987——1
DB01592——1
DB01717AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE1

Most frequently bound compounds

PDB ligandNameDomains in contact
MGmetalMAGNESIUM ION303
NAmetalSODIUM ION179
CLCHLORIDE ION152
MNmetalMANGANESE (II) ION136
PPVPYROPHOSPHATE100
CAmetalCALCIUM ION66
DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE39
DCP2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE37
TTPTHYMIDINE-5'-TRIPHOSPHATE36
DTP2'-DEOXYADENOSINE 5'-TRIPHOSPHATE27
8DG8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE20
DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE20
0KX2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine19
D3T2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE16
GOAGLYCOLIC ACID15
1FZ5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine13
DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE13
XG42'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine12
8GT8-OXO-GUANOSINE-5'-TRIPHOSPHATE10
ZNmetalZINC ION10