F-group (family)
325.1.7.2 RNA_pol_Rpb2_6
Ligands and drugs
3,124
Member domains
52
with ligand contacts (≤ 4 Å)
1.7% of members
43
with DrugDomain annotations
1.4% of members
6
with a DrugBank compound
0.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 325.1.7.2 belongs to X-group 325 alpha/beta-Hammerhead/Barrel-sandwich hybrid, which binds 8.9 ligand superclasses per 20 proteins, broader than 75% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01045 | RFP | Rifampin | 5 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| 1N7 | CHAPSO | 29 |
| MGmetal | MAGNESIUM ION | 7 |
| 4QM | (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol | 2 |
| B4P | BIS(ADENOSINE)-5'-TETRAPHOSPHATE | 2 |
| RFP | RIFAMPICIN | 2 |
| A1IF9 | [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate | 1 |
| D9X | (2S,7R,7aR,13aP,16Z,18E,20S,21S,22R,23R,24R,25S,26R,27S,28E)-5,21,23-trihydroxy-27-methoxy-2,4,16,20,22,24,26-heptamethyl-10-[4-(2-methylpropyl)piperazin-1-yl]-12-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1,6,15-trioxo-1,2,7,7a-tetrahydro-6H-2,7-(epoxypentadeca[1,11,13]trienoimino)[1]benzofuro[4,5-a]phenoxazin-25-yl acetate | 1 |
| G3A | GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE | 1 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 1 |
| ZNmetal | ZINC ION | 1 |