F-group (family)
5084.5.1.4 OprD
Ligands and drugs
77
Member domains
45
with ligand contacts (≤ 4 Å)
58.4% of members
45
with DrugDomain annotations
58.4% of members
43
with a DrugBank compound
55.8% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5084.5.1.4 belongs to X-group 5084 Outer membrane meander beta-barrels, which binds 9.4 ligand superclasses per 20 proteins, broader than 87% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02130 | VNL | Vanillic acid | 4 |
| DB03156 | BDP | beta-D-glucuronic acid | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CAmetal | CALCIUM ION | 6 |
| DMU | DECYL-BETA-D-MALTOPYRANOSIDE | 5 |
| MGmetal | MAGNESIUM ION | 4 |
| VNL | 4-HYDROXY-3-METHOXYBENZOATE | 4 |
| BDP | beta-D-glucopyranuronic acid | 2 |
| PGV | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE | 2 |
| 3PE | 1,2-Distearoyl-sn-glycerophosphoethanolamine | 1 |