T-group (topology)
5084.5.1 Porin
Ligands and drugs
1,462
Member domains
404
with ligand contacts (≤ 4 Å)
27.6% of members
328
with DrugDomain annotations
22.4% of members
232
with a DrugBank compound
15.9% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5084.5.1 belongs to X-group 5084 Outer membrane meander beta-barrels, which binds 9.4 ligand superclasses per 20 proteins, broader than 87% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02767 | FTT | (R)-3-hydroxytetradecanoic acid | 9 |
| DB08231 | MYR | Myristic acid | 8 |
| DB00141 | NAG | N-Acetylglucosamine | 6 |
| DB02415 | OES | N-Octyl-2-Hydroxyethyl Sulfoxide | 6 |
| DB03548 | KDO | 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid | 6 |
| DB00171 | ATP | ATP | 4 |
| DB00254 | DXT | Doxycycline | 4 |
| DB02130 | VNL | Vanillic acid | 4 |
| DB00415 | AIC | Ampicillin | 3 |
| DB01375 | — | — | 3 |
| DB02777 | PLC | Diundecyl Phosphatidyl Choline | 2 |
| DB03156 | BDP | beta-D-glucuronic acid | 2 |
| DB03566 | SPD | Spermidine | 2 |
| DB04237 | TAM | Tris(Hydroxyethyl)Aminomethane | 2 |
| DB09459 | TLA | L-tartaric acid | 2 |
| DB00157 | NAI | NADH | 1 |
| DB00537 | CPF | Ciprofloxacin | 1 |
| DB00694 | DM1 | Daunorubicin | 1 |
| DB02379 | BGC | Beta-D-Glucose | 1 |
| DB03017 | DAO | Lauric acid | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| NAmetal | SODIUM ION | 62 |
| MGmetal | MAGNESIUM ION | 36 |
| PC1 | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 28 |
| CAmetal | CALCIUM ION | 24 |
| OCT | N-OCTANE | 17 |
| CL | CHLORIDE ION | 14 |
| MC3 | 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE | 14 |
| LImetal | LITHIUM ION | 11 |
| BR | BROMIDE ION | 10 |
| HEX | HEXANE | 10 |
| D12 | DODECANE | 9 |
| FTT | 3-HYDROXY-TETRADECANOIC ACID | 9 |
| D10 | DECANE | 8 |
| MYR | MYRISTIC ACID | 8 |
| OLC | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate | 8 |
| ZNmetal | ZINC ION | 8 |
| Kmetal | POTASSIUM ION | 7 |
| 46E | (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate | 6 |
| C14 | TETRADECANE | 6 |
| DMU | DECYL-BETA-D-MALTOPYRANOSIDE | 6 |