T-group (topology)
616.1.1 S15/NS1 RNA-binding domain
Ligands and drugs
3,636
Member domains
369
with ligand contacts (≤ 4 Å)
10.1% of members
216
with DrugDomain annotations
5.9% of members
40
with a DrugBank compound
1.1% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 616.1.1 belongs to X-group 616 S15/NS1 RNA-binding domain, which has 13 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB14128 | NAD | Nadide | 15 |
| DB00139 | SIN | Succinic acid | 2 |
| DB00145 | GLY | Glycine | 2 |
| DB00160 | ALA | Alanine | 1 |
| DB03309 | NHE | N-cyclohexyltaurine | 1 |
| DB03566 | SPD | Spermidine | 1 |
| DB11638 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 217 |
| OHX | osmium (III) hexammine | 77 |
| NAD | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 34 |
| Kmetal | POTASSIUM ION | 10 |
| PAR | PAROMOMYCIN | 8 |
| NAmetal | SODIUM ION | 5 |
| 8UZ | TC007 | 3 |
| GLY | GLYCINE | 3 |
| BR | BROMIDE ION | 2 |
| SIN | SUCCINIC ACID | 2 |
| SPD | SPERMIDINE | 2 |
| UNX | UNKNOWN ATOM OR ION | 2 |
| D10 | DECANE | 1 |
| HEX | HEXANE | 1 |
| HY0 | HYGROMYCIN B VARIANT | 1 |
| LLL | (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL | 1 |
| NHE | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID | 1 |
| PGW | (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl(9Z)-octadec-9-enoate | 1 |
| PLM | PALMITIC ACID | 1 |
| PX2 | 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE | 1 |