ECODEvolutionary Classification of Protein Domains

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PDB 6YBS

ELECTRON MICROSCOPY18 chains18 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain a40S ribosomal protein S10view chain

1 domain

e6ybsa1(a:1-99)

Chain b40S ribosomal protein S15view chain

1 domain

e6ybsb1(b:15-124)

Chain cReceptor of activated protein C kinase 1view chain

1 domain

e6ybsc1(c:2-314)

Chain d40S ribosomal protein S19view chain

1 domain

e6ybsd1(d:3-144)

Chain e40S ribosomal protein S25view chain

1 domain

e6ybse1(e:45-110)

Chain f40S ribosomal protein S18view chain

1 domain

e6ybsf1(f:4-145)

Chain h40S ribosomal protein S20view chain

1 domain

e6ybsh1(h:17-119)

Chain i40S ribosomal protein S29view chain

1 domain

e6ybsi1(i:7-56)

Chain kUbiquitin-40S ribosomal protein S27aview chain

1 domain

e6ybsk1(k:93-151)

Chain m40S ribosomal protein S12view chain

1 domain

e6ybsm1(m:11-132)

Chain n40S ribosomal protein S28view chain

1 domain

e6ybsn1(n:5-67)

Chain oEukaryotic translation initiation factor 3 subunit Gview chain

1 domain

e6ybso1(o:238-314)

Chain V40S ribosomal protein S5view chain

1 domain

e6ybsV1(V:16-204)

Chain xEukaryotic translation initiation factor 3 subunit Dview chain

1 domain

e6ybsx1(x:169-528)

Chain X40S ribosomal protein S17view chain

1 domain

e6ybsX1(X:2-79)

Chain Y40S ribosomal protein S16view chain

1 domain

e6ybsY1(Y:6-146)

Chain Z40S ribosomal protein S3view chain

2 domains

e6ybsZ1(Z:92-227)e6ybsZ2(Z:1-99)

All Domains (18)

#	Chain	Domain ID	Range	Family	Classification
1	a	e6ybsa1	a:1-99	S10_plectin	101 → 101.1 → 101.1.2
2	b	e6ybsb1	b:15-124	Ribosomal_S19	838 → 838.1 → 838.1.1
3	c	e6ybsc1	c:2-314	WD40	5 → 5.1 → 5.1.4
4	d	e6ybsd1	d:3-144	Ribosomal_S19e	101 → 101.1 → 101.1.2
5	e	e6ybse1	e:45-110	Ribosomal_S25	101 → 101.1 → 101.1.2
6	f	e6ybsf1	f:4-145	Ribosomal_S13	102 → 102.2 → 102.2.1
7	h	e6ybsh1	h:17-119	Ribosomal_S10	304 → 304.44 → 304.44.1
8	i	e6ybsi1	i:7-56	Ribosomal_S14	377 → 377.1 → 377.1.1
9	k	e6ybsk1	k:93-151	Ribosomal_S27	375 → 375.1 → 375.1.1
10	m	e6ybsm1	m:11-132	Ribosomal_L7Ae	301 → 301.1 → 301.1.1
11	n	e6ybsn1	n:5-67	Ribosomal_S28e	2 → 2.1 → 2.1.1
12	o	e6ybso1	o:238-314	RRM_1	304 → 304.9 → 304.9.1
13	V	e6ybsV1	V:16-204	Ribosomal_S7	167 → 167.1 → 167.1.1
14	x	e6ybsx1	x:169-528	eIF-3_zeta	2008 → 2008.1 → 2008.1.1
15	X	e6ybsX1	X:2-79	Ribosomal_S17e	101 → 101.1 → 101.1.17
16	Y	e6ybsY1	Y:6-146	Ribosomal_S9	212 → 212.1 → 212.1.1
17	Z	e6ybsZ1	Z:92-227	Ribosomal_S3_C	230 → 230.2 → 230.2.1
18	Z	e6ybsZ2	Z:1-99	KH_2	327 → 327.11 → 327.11.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors