ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7s0zB1 - ECOD Domain | ECOD

ECOD/Domains/e7s0zB1

e7s0zB1

UID: 002772648

PDB

Range: B:92-541
PDB: 7S0Z chain B(all domains)

Molecule: Toxin B

3D Structure

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Related Domains

Browse other domains in TcdA_TcdB →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyTcdA_TcdB(7516.1.1.25)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Uridine-5'-DiphosphateUDP
drugDrugBank DB03435

Pfam Families

PF12919TcdA_TcdB

TcdA/TcdB catalytic glycosyltransferase domain

ClanCL0110GT-A

External Links

ECOD PDB View: 7S0Z RCSB PDB: 7S0Z PDBe: 7S0Z

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

alpha-D-glucopyranose

Magnesium ionMG

metal

MANGANESE (II) IONMN

metal

+ 4 additives (Acetate, 1,2-ETHANEDIOL, Ammonium ion, …)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOLEDO
Ammonium ionNH4
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.