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PDB 5OQL

ELECTRON MICROSCOPY0 chains73 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (73)

#ChainDomain IDRangeFamilyClassification
1ae5oqla1a:2-180Ribosomal_S4,S4221 → 221.1 → 221.1.2
2Ae5oqlA1A:730-847Utp12109 → 109.54 → 109.54.1
3Ae5oqlA2A:3-338WD405 → 5.1 → 5.1.4
4Ae5oqlA3A:338-729WD405 → 5.1 → 5.1.4
5be5oqlb1b:83-274Brix7502 → 7502.1 → 7502.1.1
6de5oqld01d:81-315WD405 → 5.1 → 5.1.5
7de5oqld02d:316-3575.1.4.05 → 5.1 → 5.1.4
8De5oqlD1D:14-365WD405 → 5.1 → 5.1.4
9ee5oqle1e:24-252EMG12488 → 2488.1 → 2488.1.1
10Ee5oqlE1E:2-196,E:272-409U3_assoc_6, HAT_Syf1_CNRKL1_N109 → 109.4 → 109.4.1
11fe5oqlf1f:24-252EMG12488 → 2488.1 → 2488.1.1
12Fe5oqlF01F:153-464WD40,BING4CT5 → 5.1 → 5.1.5
13ge5oqlg1g:118-209KRR1-like_KH2327 → 327.11 → 327.11.2
14ge5oqlg2g:36-117KH_8327 → 327.11 → 327.11.2
15Ge5oqlG1G:3-365U3snoRNP10109 → 109.4 → 109.4.1
16he5oqlh1h:80-161327.11.2.0327 → 327.11 → 327.11.2
17he5oqlh2h:162-251KH_PNO1_2nd327 → 327.11 → 327.11.2
18ie5oqli1i:503-660,i:721-804GNAT_acetyltr_2213 → 213.1 → 213.1.1
19ie5oqli2i:10-60,i:113-211TmcA_N2004 → 2004.1 → 2004.1.1
20ie5oqli3i:834-934tRNA_bind_2101 → 101.1 → 101.1.1
21ie5oqli4i:212-227,i:259-327,i:368-432,i:469-502Helicase_RecD2004 → 2004.1 → 2004.1.1
22Ie5oqlI1I:777-931Utp12109 → 109.54 → 109.54.1
23je5oqlj1j:503-660,j:721-804GNAT_acetyltr_2213 → 213.1 → 213.1.1
24je5oqlj2j:212-227,j:259-327,j:368-432,j:469-502Helicase_RecD2004 → 2004.1 → 2004.1.1
25je5oqlj3j:834-934tRNA_bind_2101 → 101.1 → 101.1.1
26je5oqlj4j:10-60,j:113-211TmcA_N2004 → 2004.1 → 2004.1.1
27Je5oqlJ1J:731-889Utp13109 → 109.54 → 109.54.1
28le5oqll1l:114-232Ribosomal_S3Ae230 → 230.6 → 230.6.1
29le5oqll2l:19-113Ribosomal_S3Ae239 → 239.5 → 239.5.1
30Le5oqlL1L:42-350WD405 → 5.1 → 5.1.5
31me5oqlm1m:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
32me5oqlm2m:176-259KOW,40S_S4_C4 → 4.1 → 4.1.1
33me5oqlm3m:2-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
34Me5oqlM1M:93-266,M:288-435,M:919-952Beta-prop_WDR75_1st5 → 5.1 → 5.1.5
35ne5oqln1n:13-212Ribosomal_S7167 → 167.1 → 167.1.1
36oe5oqlo1o:1-237Ribosomal_S6e239 → 239.1 → 239.1.1
37Oe5oqlO1O:844-867,O:923-1046Utp21109 → 109.54 → 109.54.1
38Oe5oqlO2O:386-582,O:614-793,O:840-843WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd5 → 5.1 → 5.1.4
39Oe5oqlO3O:31-385Beta-prop_WDR36-Utp21_1st5 → 5.1 → 5.1.4
40pe5oqlp1p:128-197Ribosomal_S7e327 → 327.18 → 327.18.1
41pe5oqlp2p:15-103Ribosomal_S7e327 → 327.18 → 327.18.1
42Pe5oqlP01P:91-169Fcf12006 → 2006.1 → 2006.1.4
43qe5oqlq1q:2-202Ribosomal_S8e3174 → 3174.1 → 3174.1.1
44Qe5oqlQ1Q:18-36,Q:58-88,Q:232-293Ribosomal_L1898 → 898.1 → 898.1.1
45Qe5oqlQ2Q:89-183Ribosomal_L12007 → 2007.25 → 2007.25.1
46re5oqlr1r:18-176Ribosomal_S4,S4221 → 221.1 → 221.1.2
47Re5oqlR1R:64-313Fibrillarin2003 → 2003.1 → 2003.1.5
48se5oqls1s:86-134Ribosomal_S15616 → 616.1 → 616.1.1
49Se5oqlS1S:72-308Fibrillarin2003 → 2003.1 → 2003.1.5
50te5oqlt1t:25-139Ribosomal_S112484 → 2484.1 → 2484.1.1
51Te5oqlT1T:171-301Nop606 → 606.1 → 606.1.1
52Te5oqlT2T:3-170NOP5NT3407 → 3407.1 → 3407.1.1
53Te5oqlT3T:291-331,T:372-421Nop102 → 102.1 → 102.1.4
54ue5oqlu1u:3-128Ribosomal_S9212 → 212.1 → 212.1.1
55Ue5oqlU01U:1-177NOP5NT3407 → 3407.1 → 3407.1.1
56Ue5oqlU02U:178-307Nop102 → 102.1 → 102.1.4
57Ue5oqlU03U:308-410Nop102 → 102.1 → 102.1.4
58ve5oqlv1v:5-161Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
59Ve5oqlV1V:6-126Ribosomal_L7Ae301 → 301.1 → 301.1.1
60we5oqlw1w:2-67Ribosomal_S8320 → 320.2 → 320.2.1
61we5oqlw2w:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
62We5oqlW1W:7-126Ribosomal_L7Ae301 → 301.1 → 301.1.1
63xe5oqlx1x:43-142Ribosom_S12_S232 → 2.1 → 2.1.1
64Xe5oqlX1X:152-201,X:234-369,X:394-439,X:460-505,X:556-608WD405 → 5.1 → 5.1.4
65ye5oqly1y:335-427Ribosomal_S24e304 → 304.109 → 304.109.1
66Ye5oqlY1Y:7-208,Y:325-401RTC328 → 328.6 → 328.6.1
67Ye5oqlY2Y:209-325RTC_insert2485 → 2485.2 → 2485.2.1
68ze5oqlz1z:6-66Ribosomal_S28e2 → 2.1 → 2.1.1
69Ze5oqlZ01Z:54-236MMR_HSR12004 → 2004.1 → 2004.1.1
70Ze5oqlZ02Z:237-303,Z:772-805AARP2CN1 → 1.1 → 1.1.7
71Ze5oqlZ03Z:806-917RIBIOP_C1 → 1.1 → 1.1.7
72Ze5oqlZ04Z:918-956RIBIOP_C1 → 1.1 → 1.1.7
73Ze5oqlZ05Z:957-992RIBIOP_C1 → 1.1 → 1.1.8

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors