PDB 5OQL
ELECTRON MICROSCOPY0 chains73 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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1 domainChain sview chain
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1 domainAll Domains (73)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | a | e5oqla1 | a:2-180 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 2 | A | e5oqlA1 | A:730-847 | Utp12 | 109 → 109.54 → 109.54.1 |
| 3 | A | e5oqlA2 | A:3-338 | WD40 | 5 → 5.1 → 5.1.4 |
| 4 | A | e5oqlA3 | A:338-729 | WD40 | 5 → 5.1 → 5.1.4 |
| 5 | b | e5oqlb1 | b:83-274 | Brix | 7502 → 7502.1 → 7502.1.1 |
| 6 | d | e5oqld01 | d:81-315 | WD40 | 5 → 5.1 → 5.1.5 |
| 7 | d | e5oqld02 | d:316-357 | 5.1.4.0 | 5 → 5.1 → 5.1.4 |
| 8 | D | e5oqlD1 | D:14-365 | WD40 | 5 → 5.1 → 5.1.4 |
| 9 | e | e5oqle1 | e:24-252 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 10 | E | e5oqlE1 | E:2-196,E:272-409 | U3_assoc_6, HAT_Syf1_CNRKL1_N | 109 → 109.4 → 109.4.1 |
| 11 | f | e5oqlf1 | f:24-252 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 12 | F | e5oqlF01 | F:153-464 | WD40,BING4CT | 5 → 5.1 → 5.1.5 |
| 13 | g | e5oqlg1 | g:118-209 | KRR1-like_KH2 | 327 → 327.11 → 327.11.2 |
| 14 | g | e5oqlg2 | g:36-117 | KH_8 | 327 → 327.11 → 327.11.2 |
| 15 | G | e5oqlG1 | G:3-365 | U3snoRNP10 | 109 → 109.4 → 109.4.1 |
| 16 | h | e5oqlh1 | h:80-161 | 327.11.2.0 | 327 → 327.11 → 327.11.2 |
| 17 | h | e5oqlh2 | h:162-251 | KH_PNO1_2nd | 327 → 327.11 → 327.11.2 |
| 18 | i | e5oqli1 | i:503-660,i:721-804 | GNAT_acetyltr_2 | 213 → 213.1 → 213.1.1 |
| 19 | i | e5oqli2 | i:10-60,i:113-211 | TmcA_N | 2004 → 2004.1 → 2004.1.1 |
| 20 | i | e5oqli3 | i:834-934 | tRNA_bind_2 | 101 → 101.1 → 101.1.1 |
| 21 | i | e5oqli4 | i:212-227,i:259-327,i:368-432,i:469-502 | Helicase_RecD | 2004 → 2004.1 → 2004.1.1 |
| 22 | I | e5oqlI1 | I:777-931 | Utp12 | 109 → 109.54 → 109.54.1 |
| 23 | j | e5oqlj1 | j:503-660,j:721-804 | GNAT_acetyltr_2 | 213 → 213.1 → 213.1.1 |
| 24 | j | e5oqlj2 | j:212-227,j:259-327,j:368-432,j:469-502 | Helicase_RecD | 2004 → 2004.1 → 2004.1.1 |
| 25 | j | e5oqlj3 | j:834-934 | tRNA_bind_2 | 101 → 101.1 → 101.1.1 |
| 26 | j | e5oqlj4 | j:10-60,j:113-211 | TmcA_N | 2004 → 2004.1 → 2004.1.1 |
| 27 | J | e5oqlJ1 | J:731-889 | Utp13 | 109 → 109.54 → 109.54.1 |
| 28 | l | e5oqll1 | l:114-232 | Ribosomal_S3Ae | 230 → 230.6 → 230.6.1 |
| 29 | l | e5oqll2 | l:19-113 | Ribosomal_S3Ae | 239 → 239.5 → 239.5.1 |
| 30 | L | e5oqlL1 | L:42-350 | WD40 | 5 → 5.1 → 5.1.5 |
| 31 | m | e5oqlm1 | m:117-175 | Ribosomal_S4e | 2 → 2.1 → 2.1.1 |
| 32 | m | e5oqlm2 | m:176-259 | KOW,40S_S4_C | 4 → 4.1 → 4.1.1 |
| 33 | m | e5oqlm3 | m:2-116 | Ribosomal_S4e,S4,RS4NT | 221 → 221.1 → 221.1.2 |
| 34 | M | e5oqlM1 | M:93-266,M:288-435,M:919-952 | Beta-prop_WDR75_1st | 5 → 5.1 → 5.1.5 |
| 35 | n | e5oqln1 | n:13-212 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 36 | o | e5oqlo1 | o:1-237 | Ribosomal_S6e | 239 → 239.1 → 239.1.1 |
| 37 | O | e5oqlO1 | O:844-867,O:923-1046 | Utp21 | 109 → 109.54 → 109.54.1 |
| 38 | O | e5oqlO2 | O:386-582,O:614-793,O:840-843 | WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd | 5 → 5.1 → 5.1.4 |
| 39 | O | e5oqlO3 | O:31-385 | Beta-prop_WDR36-Utp21_1st | 5 → 5.1 → 5.1.4 |
| 40 | p | e5oqlp1 | p:128-197 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 41 | p | e5oqlp2 | p:15-103 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 42 | P | e5oqlP01 | P:91-169 | Fcf1 | 2006 → 2006.1 → 2006.1.4 |
| 43 | q | e5oqlq1 | q:2-202 | Ribosomal_S8e | 3174 → 3174.1 → 3174.1.1 |
| 44 | Q | e5oqlQ1 | Q:18-36,Q:58-88,Q:232-293 | Ribosomal_L1 | 898 → 898.1 → 898.1.1 |
| 45 | Q | e5oqlQ2 | Q:89-183 | Ribosomal_L1 | 2007 → 2007.25 → 2007.25.1 |
| 46 | r | e5oqlr1 | r:18-176 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 47 | R | e5oqlR1 | R:64-313 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 48 | s | e5oqls1 | s:86-134 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 49 | S | e5oqlS1 | S:72-308 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 50 | t | e5oqlt1 | t:25-139 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 51 | T | e5oqlT1 | T:171-301 | Nop | 606 → 606.1 → 606.1.1 |
| 52 | T | e5oqlT2 | T:3-170 | NOP5NT | 3407 → 3407.1 → 3407.1.1 |
| 53 | T | e5oqlT3 | T:291-331,T:372-421 | Nop | 102 → 102.1 → 102.1.4 |
| 54 | u | e5oqlu1 | u:3-128 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 55 | U | e5oqlU01 | U:1-177 | NOP5NT | 3407 → 3407.1 → 3407.1.1 |
| 56 | U | e5oqlU02 | U:178-307 | Nop | 102 → 102.1 → 102.1.4 |
| 57 | U | e5oqlU03 | U:308-410 | Nop | 102 → 102.1 → 102.1.4 |
| 58 | v | e5oqlv1 | v:5-161 | Ribosomal_S17,Ribosomal_S17_N | 2 → 2.1 → 2.1.1 |
| 59 | V | e5oqlV1 | V:6-126 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 60 | w | e5oqlw1 | w:2-67 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 61 | w | e5oqlw2 | w:68-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 62 | W | e5oqlW1 | W:7-126 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 63 | x | e5oqlx1 | x:43-142 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 64 | X | e5oqlX1 | X:152-201,X:234-369,X:394-439,X:460-505,X:556-608 | WD40 | 5 → 5.1 → 5.1.4 |
| 65 | y | e5oqly1 | y:335-427 | Ribosomal_S24e | 304 → 304.109 → 304.109.1 |
| 66 | Y | e5oqlY1 | Y:7-208,Y:325-401 | RTC | 328 → 328.6 → 328.6.1 |
| 67 | Y | e5oqlY2 | Y:209-325 | RTC_insert | 2485 → 2485.2 → 2485.2.1 |
| 68 | z | e5oqlz1 | z:6-66 | Ribosomal_S28e | 2 → 2.1 → 2.1.1 |
| 69 | Z | e5oqlZ01 | Z:54-236 | MMR_HSR1 | 2004 → 2004.1 → 2004.1.1 |
| 70 | Z | e5oqlZ02 | Z:237-303,Z:772-805 | AARP2CN | 1 → 1.1 → 1.1.7 |
| 71 | Z | e5oqlZ03 | Z:806-917 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 72 | Z | e5oqlZ04 | Z:918-956 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 73 | Z | e5oqlZ05 | Z:957-992 | RIBIOP_C | 1 → 1.1 → 1.1.8 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors