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Grishin Lab

ECOD


Homologous cluster 'Periplasmic binding protein-like II' representative domains

Cluster description:

Periplasmic binding protein-like II homologous cluster includes periplasmic binding proteins (PBS) of type II, that have signatured antiparallel beta-strand at the C-terminus of RLM (Fukami-Kobayashi et al., J Mol Biol., 1999; PMID: 9931266), as well as domains which have high structure similarity with other PBS-like domains: ABS-2 transporter-like domains (Reizer et al., Protein Sci., 1992; PMID: 1303751), extracellular domains of ion channels (for example Glutamate receptor-like) (Traynelis et al., Pharmacol Rev., 2010; PMID: 20716669).

ECOD repr domain ID Domain range ECOD T-group ECOD F-group ID Protein name Homology sign logo Pfam seed alignment depth Pfam Comments
e3cniA1 A:47-191 Periplasmic binding protein-like II 7523.1.1.1 Putative ABC type-2 transporter P 138 PF12698
e3mstA2 A:59-138 Periplasmic binding protein-like II 7523.1.1.16 Putative nitrate transport protein (TVN0104) n/a 8 PF12916
e3mstA1 A:1-58,A:139-225 Periplasmic binding protein-like II 7523.1.1.17 Putative nitrate transport protein (TVN0104) PGP 8 PF12916
e2f5xA2 A:99-225 Periplasmic binding protein-like II 7523.1.1.18 Periplasmic binding protein BugD GP 5 PF03401
e2f5xA1 A:2-98,A:226-300 Periplasmic binding protein-like II 7523.1.1.19 Periplasmic binding protein BugD n/a 5 PF03401
e2ozzA3 A:97-179 Periplasmic binding protein-like II 7523.1.1.20 Hypothetical protein yhfZ n/a 24 PF14503
e2ozzA2 A:1-96,A:180-228 Periplasmic binding protein-like II 7523.1.1.21 Hypothetical protein yhfZ PxP 24 PF14503
e1twyA2 A:103-237 Periplasmic binding protein-like II 7523.1.1.2 ABC-type phosphate transport receptor n/a 133 PF12727
e3kn3B1 B:2-239 Periplasmic binding protein-like II 7523.1.1.14 Putative Periplasmic Protein n/a 73 PF12849
e2x7pA2 A:87-184 Periplasmic binding protein-like II 7523.1.1.15 Possible thiamine biosynthesis enzyme n/a 49 PF09084
e2p0sB1 B:48-169 Periplasmic binding protein-like II 7523.1.1.4 Putative ABC transporter P 138 PF12698
e4hcwA1 A:119-259 Periplasmic binding protein-like II 7523.1.1.70 Thiaminase-I n/a 129 PF01547
e2v3tA2 A:105-220 Periplasmic binding protein-like II 7523.1.1.22 Glutamate receptor-like GluRdelta2 n/a 43 PF00060
e1y4cA2 A:112-259 Periplasmic binding protein-like II 7523.1.1.23 Maltose binding protein n/a 129 PF01547
e1ursA3 A:30-141,A:286-395 Periplasmic binding protein-like II 7523.1.1.25 Maltose binding protein n/a 129 PF01547
e5bwjC2 C:110-207 Periplasmic binding protein-like II 7523.1.1.27 Histidine kinase P 280 PF00497
e1uqwA3 A:242-460 Periplasmic binding protein-like II 7523.1.1.28 Putative protein yliB n/a 167 PF00496
e4uqqA6 A:628-731 Periplasmic binding protein-like II 7523.1.1.84 Ionotropic glutamate receptor n/a 43 PF00060
e5k2xA2 A:146-321 Periplasmic binding protein-like II 7523.1.1.29 Sugar ABC transporter permease n/a 129 PF01547
e1ursA2 A:142-285 Periplasmic binding protein-like II 7523.1.1.30 Maltose binding protein n/a 129 PF01547
e1uqwA4 A:3-37,A:142-241,A:461-489 Periplasmic binding protein-like II 7523.1.1.31 Putative protein yliB n/a 167 PF00496
e3ispB2 B:93-164,B:263-295 Periplasmic binding protein-like II 7523.1.1.32 Arginine permease (ArgP) n/a 361 PF03466
e4zs9A1 A:49-165,A:324-432 Periplasmic binding protein-like II 7523.1.1.33 Raffinose and panose binding protein n/a 129 PF01547
e3kg2A5 A:498-506,A:631-730 Periplasmic binding protein-like II 7523.1.1.34 Glutamate receptor 2 n/a 43 PF00060
e5l9pB1 B:11-129,B:260-352 Periplasmic binding protein-like II 7523.1.1.26 Periplasmic binding protein MotA n/a 80 PF13416
e2xxpA1 A:111-213 Periplasmic binding protein-like II 7523.1.1.35 LCP protein n/a 6 PF02916
e1ve4A3 A:93-175 Periplasmic binding protein-like II 7523.1.1.36 ATP-Phosphoribosyltransferase n/a 731 PF01634
e1ve4A2 A:1-92,A:176-206 Periplasmic binding protein-like II 7523.1.1.37 ATP-Phosphoribosyltransferase n/a 731 PF01634
e1xs5A3 A:87-200 Periplasmic binding protein-like II 7523.1.1.38 Lipoprotein Tp32 n/a 34 PF03180
e1xs5A2 A:5-86,A:201-244 Periplasmic binding protein-like II 7523.1.1.39 Lipoprotein Tp32 n/a 34 PF03180
e3t1bA2 A:89-159,A:263-290 Periplasmic binding protein-like II 7523.1.1.40 AphB n/a 361 PF03466
e1sbpA3 A:95-219 Periplasmic binding protein-like II 7523.1.1.3 Sulfate-binding protein P 135 PF13531
e1uthA3 A:86-168,A:272-304 Periplasmic binding protein-like II 7523.1.1.41 Transcriptional regulator DntR n/a 361 PF03466
e3myuB1 B:32-114,B:307-367 Periplasmic binding protein-like II 7523.1.1.42 Mycoplasma genitalium MG289 n/a 5 PF06646
e3myuB2 B:115-306 Periplasmic binding protein-like II 7523.1.1.43 Mycoplasma genitalium MG289 n/a 5 PF06646
e3qslB2 B:20-163 Periplasmic binding protein-like II 7523.1.1.91 CAE31940 n/a 42 PF13379
e2de2A2 A:19-157 Periplasmic binding protein-like II 7523.1.1.102 Desulfurization enzyme DSZB n/a 42 PF13379
e1sw5A2 A:109-214 Periplasmic binding protein-like II 7523.1.1.44 Osmoprotection protein (proX) n/a 86 PF04069
e1sw5A3 A:6-108,A:215-275 Periplasmic binding protein-like II 7523.1.1.45 Osmoprotection protein (proX) n/a 86 PF04069
e1r9lA2 A:1-91,A:235-309 Periplasmic binding protein-like II 7523.1.1.46 Periplasmic Ligand-binding Protein ProX n/a 86 PF04069
e2qmwA3 A:1-82,A:168-184 Periplasmic binding protein-like II 7523.1.1.47 Prephenate dehydratase GxxG 94 PF00800
e2qmwA4 A:83-167 Periplasmic binding protein-like II 7523.1.1.48 Prephenate dehydratase n/a 94 PF00800
e3n5lA2 A:113-227 Periplasmic binding protein-like II 7523.1.1.49 binding protein component of ABC phosphonate transporter n/a 102 PF12974
e3n5lA1 A:26-112,A:228-331 Periplasmic binding protein-like II 7523.1.1.50 binding protein component of ABC phosphonate transporter P 102 PF12974
e1pdaA4 A:3-102,A:199-219 Periplasmic binding protein-like II 7523.1.1.51 Porphobilinogen deaminase n/a 779 PF01379
e1pdaA3 A:103-198 Periplasmic binding protein-like II 7523.1.1.52 Porphobilinogen deaminase n/a 779 PF01379
e2onsA2 A:113-283 Periplasmic binding protein-like II 7523.1.1.53 periplasmic binding protein ModA n/a 129 PF01547
e1sbpA2 A:1-94,A:220-309 Periplasmic binding protein-like II 7523.1.1.54 Sulfate-binding protein n/a 135 PF13531
e1wdnA2 A:4-87,A:184-226 Periplasmic binding protein-like II 7523.1.1.55 Glutamine-binding protein (GlnBP) P 280 PF00497
e2ia4B2 B:129-279 Periplasmic binding protein-like II 7523.1.1.104 Putative periplasmic binding transport protein P 280 PF00497
e4gqoA2 A:35-152,A:318-438 Periplasmic binding protein-like II 7523.1.1.67 uncharacterized protein lmo0859 n/a 80 PF13416
e1wdnA3 A:88-183 Periplasmic binding protein-like II 7523.1.1.56 Glutamine-binding protein (GlnBP) n/a 280 PF00497
e4nx1A2 A:6-150,A:240-328 Periplasmic binding protein-like II 7523.1.1.57 Solute binding protein n/a 33 PF03480
e1ryoA3 A:94-247 Periplasmic binding protein-like II 7523.1.1.58 Serum transferrin n/a 8 PF00405
e1ryoA2 A:4-93,A:248-327 Periplasmic binding protein-like II 7523.1.1.59 Serum transferrin n/a 8 PF00405
e2czlA3 A:80-172 Periplasmic binding protein-like II 7523.1.1.60 Menaquinone biosynthetic enzyme MqnD P 86 PF02621
e2czlA2 A:3-79,A:173-272 Periplasmic binding protein-like II 7523.1.1.61 Menaquinone biosynthetic enzyme MqnD P 86 PF02621
e4pe5C5 C:536-548,C:659-756 Periplasmic binding protein-like II 7523.1.1.62 GluN1a/GluN2B NMDA Receptor n/a 43 PF00060
e2esnA4 A:92-173,A:277-303 Periplasmic binding protein-like II 7523.1.1.63 probable transcriptional regulator PA0477 n/a 361 PF03466
e1twyA3 A:28-102,A:238-276 Periplasmic binding protein-like II 7523.1.1.64 ABC-type phosphate transport receptor n/a 133 PF12727
e4pe5B5 B:529-539,B:660-761 Periplasmic binding protein-like II 7523.1.1.65 GluN1a/GluN2B NMDA Receptor n/a 43 PF00060
e2a5sA2 A:134-243 Periplasmic binding protein-like II 7523.1.1.66 N-methyl-D-aspartate receptor NMDAR2A n/a 43 PF00060
e3q29C2 C:2-112,C:261-385 Periplasmic binding protein-like II 7523.1.1.68 Maltose-binding periplasmic protein n/a 129 PF01547
e3nohA1 A:46-168 Periplasmic binding protein-like II 7523.1.1.5 putative peptide binding protein (RUMGNA_00914) n/a 167 PF00496
e3thiA2 A:114-269 Periplasmic binding protein-like II 7523.1.1.6 Thiaminase-I n/a 129 PF01547
e2v3qA2 A:1-90,A:298-376 Periplasmic binding protein-like II 7523.1.1.7 phosphate binding apolipoprotein n/a 73 PF12849
e1us5A3 A:17-110,A:247-314 Periplasmic binding protein-like II 7523.1.1.8 Putative Periplasmic Glutamate/Glutamine-Binding Protein n/a 34 PF16868
e1us5A2 A:111-246 Periplasmic binding protein-like II 7523.1.1.9 Putative Periplasmic Glutamate/Glutamine-Binding Protein n/a 34 PF16868
e4hcwA2 A:5-118,A:260-356 Periplasmic binding protein-like II 7523.1.1.73 Thiaminase-I n/a 129 PF01547
e2x26A2 A:25-106,A:208-332 Periplasmic binding protein-like II 7523.1.1.100 periplasmic aliphatic sulphonate binding protein SsuA n/a 779 PF01379
e2x7pA1 A:1-86,A:185-306 Periplasmic binding protein-like II 7523.1.1.10 Possible thiamine biosynthesis enzyme n/a 49 PF09084
e3a09A1 A:1-132,A:311-490 Periplasmic binding protein-like II 7523.1.1.11 alginate-binding protein AlgQ1 n/a 129 PF01547
e3a09A2 A:133-310 Periplasmic binding protein-like II 7523.1.1.12 alginate-binding protein AlgQ1 n/a 129 PF01547
e5l9pB2 B:130-259 Periplasmic binding protein-like II 7523.1.1.13 Periplasmic binding protein MotA n/a 80 PF13416
e5teuA3 A:-13-121,A:247-304 Periplasmic binding protein-like II 7523.1.1.85 Periplasmic binding protein YehZ n/a 86 PF04069
e6o0dA6 A:231-464 Periplasmic binding protein-like II 7523.1.1.96 Saxiphilin n/a 8 PF00405