Domain ID e1pdaA4

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Porphobil_deam
UID: 001518755
Type: Manual and representative domain
Range: A:3-102,A:199-219
Ligands: ACY DPM
PDB: 1pda
PDB Description: PORPHOBILINOGEN DEAMINASE
UniProt: P06983
Hsap BLAST neighbor: P08397
Species: Escherichia coli

Structure of domain e1pdaA4

Structural contacts of domain e1pdaA4 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1pdaA4 A:x,y,z->A:-X,-Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e1pdaA1 A:x,y,z->A:-X,-Y,Z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol
e1pdaA4 A:-X,-Y,Z->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e1pdaA1 A:-X,-Y,Z->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol
e1pdaA3 A:-X+1/2,Y-1/2,-Z+1->A:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e1pdaA1 A:-X+1/2,Y-1/2,-Z+1->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol
e1pdaA1 A:-X+1/2,Y-1/2,-Z->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol