Citrus Sinensis ID: 000050
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2622 | 2.2.26 [Sep-21-2011] | |||||||
| Q92616 | 2671 | Translational activator G | yes | no | 0.964 | 0.946 | 0.338 | 0.0 | |
| Q54WR2 | 2667 | Translational activator g | yes | no | 0.866 | 0.851 | 0.331 | 0.0 | |
| Q10105 | 2670 | Translational activator g | yes | no | 0.697 | 0.685 | 0.337 | 0.0 | |
| P33892 | 2672 | Translational activator G | yes | no | 0.588 | 0.577 | 0.354 | 0.0 | |
| O94489 | 1047 | Elongation factor 3 OS=Sc | no | no | 0.101 | 0.254 | 0.340 | 5e-36 | |
| O14134 | 1057 | mRNA export factor elf1 O | no | no | 0.104 | 0.258 | 0.316 | 4e-32 | |
| P29551 | 1042 | Elongation factor 3 OS=Pn | N/A | no | 0.104 | 0.263 | 0.304 | 5e-32 | |
| P25997 | 1050 | Elongation factor 3 OS=Ca | N/A | no | 0.117 | 0.294 | 0.282 | 2e-27 | |
| P53978 | 1044 | Elongation factor 3B OS=S | no | no | 0.090 | 0.227 | 0.313 | 2e-26 | |
| P16521 | 1044 | Elongation factor 3A OS=S | no | no | 0.090 | 0.227 | 0.296 | 3e-26 |
| >sp|Q92616|GCN1L_HUMAN Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6 | Back alignment and function desciption |
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Score = 1331 bits (3445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/2696 (33%), Positives = 1446/2696 (53%), Gaps = 168/2696 (6%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S+TL A V+T+S K R+ I ++ + ++ L + T Y D S
Sbjct: 8 SETLKRFAGKVTTASVKERREIL-SELGKCVAGKDLPEGAVKGLCKLFCLTLHRYRDAAS 66
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVG---------CYRLLKWSCLL 117
R+A+ I++ L E T A L+ +++ S S G L W+CLL
Sbjct: 67 RRALQAAIQQ-LAEAQPEAT-AKNLLHSLQS-SGIGSKAGVPSKSSGSAALLALTWTCLL 123
Query: 118 LSKSQFATVSK---NALCRVAAAQASLLHIVMQRSFRER-RACKQTFFHLFSQSPDIYKT 173
+ + F + +K + ++ Q LL V+ S + + L+ ++P + +
Sbjct: 124 V-RIVFPSRAKRQGDIWNKLVEVQCLLLLEVLGGSHKHAVDGAVKKLTKLWKENPGLVEQ 182
Query: 174 YTDELKDARIPYKHSPELICLLLEFLS--KSPSLFEKCRPIFLDIYVKAVLNAKEKPMKG 231
Y + P ++ ++ LL++F + K + + + LD Y+K +L +K KP K
Sbjct: 183 YLSAILSLE-PNQNYAGMLGLLVQFCTSHKEMDVVSQHKSALLDFYMKNILMSKVKPPKY 241
Query: 232 LSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILS 291
L +S PL ++S +F+ ++LP K L R+PE ++E+I LL SV LDLS+YA +I+
Sbjct: 242 LLDSCAPLLRYLSHSEFKDLILPTIQKSLLRSPENVIETISSLLASVTLDLSQYAMDIVK 301
Query: 292 VVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIG 351
+ ++ A+ + L+ + S+ A+E++ + A++GGSEG+L Q++
Sbjct: 302 GLAGHLKSNSPRLMDEAVLALRNLARQCSDSSAMESLTKHLFAILGGSEGKLTVVAQKMS 361
Query: 352 MVNALQELS-NATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADII 410
+++ + +S + G L+ + + + + E +E + +S +A W R +
Sbjct: 362 VLSGIGSVSHHVVSGPSSQVLNGIVAELFIPFLQQEVHEGTLVHAVSVLALWCNRFTMEV 421
Query: 411 QSDLLSFFASGLKEK---EALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKA 467
L +F K A+R +L+C+ + D +LQ LL LIQ V+ +++
Sbjct: 422 PKKLTEWFKKAFSLKTSTSAVRHAYLQCM-LASYRGDTLLQALDLLPLLIQTVEKAASQS 480
Query: 468 VQR---LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDC 524
Q +G+ A L++ K++ AD +AE ++ W L+ + + + ++ +D
Sbjct: 481 TQVPTITEGVAAALLLLKLSVADSQAEAKLS--SFWQLIVDEKKQVFTSEKFLVMASEDA 538
Query: 525 MACV-ELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVP- 582
+ V L L ++H HR L V+ + ++ +W +R+ A RK+++S+
Sbjct: 539 LCTVLHLTERLFLDHPHR-LTGNKVQQYHRALVAVLLSRTWHVRRQAQQTVRKLLSSLGG 597
Query: 583 -HLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA 641
L+ LL E LS + + +D + ++ ++P +Q + L VI+ V
Sbjct: 598 FKLAHGLLEELKTVLSSHKVLPLEALVTDAGEVTEAGKAYVPPRVLQ-EALCVISGVPGL 656
Query: 642 RG-----PSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCK 696
+G + ++ SHHPS+V + +W L L + + ++ + +
Sbjct: 657 KGDVTDTEQLAQEMLIISHHPSLVAV--QSGLWPAL---LARMKIDPEAFITRHLDQI-- 709
Query: 697 VLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQ 756
+ M+ Q+++N++ +L ++P + ++ +
Sbjct: 710 -----IPRMTTQSPLNQSSMNAMGSLSVLSPDRVLPQLISTITASVQNPALRLVTREEFA 764
Query: 757 VFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREV 816
+ TP G L Y I+ + +QD + K S ++
Sbjct: 765 IMQTPAGEL------YDKSIIQSA-------------QQDSIKKANMKRENKAYSFKEQI 805
Query: 817 SGAGKKDIGKSTKKADKGKTAKEEARELL---LNEEASIREKVQGVQRNLSLMLSALGEM 873
K+ K K + + +E+L L+ EA +R ++Q + L L L +
Sbjct: 806 IELELKEEIKKKKGIKEEVQLTSKQKEMLQAQLDREAQVRRRLQELDGELEAALGLLDII 865
Query: 874 AIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATA--- 930
NP +P LV PLL+SP+ + L+ C MP AL +
Sbjct: 866 LAKNPSGLTQYIPVLVDSFLPLLKSPLAAPRIKNPFLSLAACV-MPSRLKALGTLVSHVT 924
Query: 931 LRLI----VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFV 986
LRL+ V ++ +L +V A + + R+ G + PL +F+ V
Sbjct: 925 LRLLKPECVLDKSWCQEELSVAVKRAVMLLHTHTITSRVGKG---EPGAAPLSAPAFSLV 981
Query: 987 FPIIERILLS-PKRTGLHDD----VLQMLYKHMD----PLLP-----------LPRLRMI 1026
FP ++ +L P + ++ +LQ+L P P LPR+ M+
Sbjct: 982 FPFLKMVLTEMPHHSEEEEEWMAQILQILTVQAQLRASPNTPPGRVDENGPELLPRVAML 1041
Query: 1027 SVLYHVLGV-VPSYQAAIGSALNELCLG---------LQPNEVASALHGVYTKDVHVRMA 1076
+L V+G P Q L LC + EV L + + VR
Sbjct: 1042 RLLTWVIGTGSPRLQVLASDTLTTLCASSSGDDGCAFAEQEEVDVLLCALQSPCASVRET 1101
Query: 1077 CLNAV----KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY 1132
L + +PA T + + LW+ D E+ + + AE +W G D D
Sbjct: 1102 VLRGLMELHMVLPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDL 1160
Query: 1133 -SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA-- 1189
S L + + VR A AEAL+ A+ Y + L +Y + +DA
Sbjct: 1161 CSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLDALG 1220
Query: 1190 ---------GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAG 1240
W R G+ALAL+ + L + + + F + AL D + DVR ML+A
Sbjct: 1221 RVISESPPDQWEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAA 1280
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ ++ HG++NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV
Sbjct: 1281 LATLNTHGKENVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKP 1339
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
+V KL+ L+TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+
Sbjct: 1340 IVAKLIAALSTPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAY 1399
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+
Sbjct: 1400 GLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVH 1459
Query: 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LP LL+ F D VREAA+ A+A+MS LSA GVKLVLPSLL LE+++WRTK SV+
Sbjct: 1460 VLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVE 1519
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P
Sbjct: 1520 LLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAP 1579
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+
Sbjct: 1580 VLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQII 1639
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+
Sbjct: 1640 GNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLP 1698
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLT 1718
WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+
Sbjct: 1699 WLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIM 1758
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP
Sbjct: 1759 MFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLP 1818
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
+E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG
Sbjct: 1819 QLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALG 1878
Query: 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS 1898
++RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ LAS+
Sbjct: 1879 VERRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTC 1938
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S +
Sbjct: 1939 ADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDA 1998
Query: 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 2018
+L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S
Sbjct: 1999 VLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVS 2058
Query: 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
+ ALDGLKQ++++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA
Sbjct: 2059 EFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPA 2115
Query: 2079 LLSAMGDD--DMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 2136
++ A+ + D Q + V D+ G ++ LL+ + +R+++A ++
Sbjct: 2116 VMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIIL 2175
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 2196
+ SK +++S LI L +DS + +W+AL+ + + Q + I+ +
Sbjct: 2176 NIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEEL 2235
Query: 2197 RDAISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGE 2255
I ++ + + +PGFCLP K + +LP+ +G+++GS E +E+AA LG
Sbjct: 2236 HKEIRLIGNESKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGL 2289
Query: 2256 LIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQ 2315
+I +TS +L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQ
Sbjct: 2290 VIRLTSADALRPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQ 2349
Query: 2316 TTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ-VSDAGIREAILTALK 2374
TTF K LQDS R VR AA ALGKL ++ +VDPL +LL+ ++ + D G+R+ +L AL+
Sbjct: 2350 TTFTKALQDSNRGVRLKAADALGKLISIHIKVDPLFTELLNGIRAMEDPGVRDTMLQALR 2409
Query: 2375 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE- 2433
V++ AG V + ++ + S+L ++ HD+D+ R+S+A LG + + + +L+ +LQ+
Sbjct: 2410 FVIQGAGAKVDAVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSAVLQQC 2469
Query: 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 2493
LL S W RHG L + + P + + + + SS ++ P+ +
Sbjct: 2470 LLADVSGIDWMVRHGRSLALSVAVNVAPGRLCAGRYSSDVQEMILSSATADRIPIAVSGV 2529
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN------ 2547
+ +G L+ H I++G + L V L + SS++R L A K + AN
Sbjct: 2530 RGMGFLMRHHIETGGGQLPAKLSSL--FVKCLQNPSSDIR---LVAEKMIWWANKDPLPP 2584
Query: 2548 --PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601
P AI + AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 2585 LDPQAIKPILK----ALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLSKIL 2636
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Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating GCN2 protein kinase (EIF2AK1-4) activity. Homo sapiens (taxid: 9606) |
| >sp|Q54WR2|GCN1L_DICDI Translational activator gcn1 OS=Dictyostelium discoideum GN=gcn1l1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1153 bits (2982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/2475 (33%), Positives = 1308/2475 (52%), Gaps = 204/2475 (8%)
Query: 213 FLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIG 272
L+IY K V+ + ++ ++ + F LF ++ ED QSI+LP + +KR+ + + + +
Sbjct: 260 LLNIYNKTVIGSSQQKIEE-HKFFKRLFNQLTNEDLQSIILPPLSRHIKRDQDQVFKILI 318
Query: 273 ILLKSVNLDLS---------KYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPD 323
+L++++ D + +L V+ +E RK T + E+S +
Sbjct: 319 FILENLSSDFNVIDLSSLLKSMLLPMLLPVIQSTISIEENRKLLKKT-FTLIIERSKDTK 377
Query: 324 ALEAM----FYAIKAVIGGSEGRLAFPYQRIGMV---NALQELSNATE-----GKYLNSL 371
+ +M +V G +L ++ N ++ LS TE + L S+
Sbjct: 378 LISSMITDDLLKTLSVAGNPSQKLIIISIISSIISTKNFIERLSLTTEKLQLSKQILQSI 437
Query: 372 SLTICKFLLSCYKDEGNEEVKL--AILSAVASWAKRSADIIQSDLLSFFASGLKEKEALR 429
S+ + K L KD N+ KL ++ V +++ II + LK + +
Sbjct: 438 SIYLEKEL---NKDNRNKGFKLLGKVMKMVEELPEQTIKII--------TNSLKNDDDII 486
Query: 430 RGHLRCLRVICTNTDAVLQVSSLLGP--------LIQLVKTGFTKAVQ------------ 469
+G + +L +S LGP +IQ++ GFT+ +
Sbjct: 487 KGQV------------ILSLSKSLGPEANGTNKKVIQII-NGFTETINTILKNVKNAKTC 533
Query: 470 -------RLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVD 522
L + + + + DI + + K + +L + L I + S
Sbjct: 534 DPSTTTASLHYMLSLITTTGVPKNDIFTKYSTDKTTISNLYASTS-FLHTDGFIQRTSKK 592
Query: 523 DCMACVELLVVLLVEHSHRVLETFSVKL-----LLQLVLLFTCHPSWDIRKMAHDATRKI 577
D ++LL+ L + RV S+KL L VL H W + K + R I
Sbjct: 593 D--HAIDLLLTLFL----RVKSFPSIKLNDKSPLYSSVLNCLLHSQWSVSKHSAIKIRSI 646
Query: 578 IT-------SVPHLSEALLLEFSNFL---SLVGEKIIISKTSDTDDFVDSQVPFLPSVEV 627
++ P LS LL+EFS L SL+ II+ ++ + + + +
Sbjct: 647 LSRNDSVDIDYPLLSNQLLIEFSTILFDDSLIITPQIINSNVESTTTTTTTISNKKNYLI 706
Query: 628 QVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIV 687
+++L ++ P S + C +HP I + W+R+ ++ +V +
Sbjct: 707 AFRSILS-KNIKSELYPMLS---LIC-YHPFI------NYNWKRVSSLIQN---DVNTTL 752
Query: 688 SADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVH 747
S++ + K + N QQA +++ LM+ + + E+ +K + +
Sbjct: 753 SSNAIEISKYIFEKGLNQKKNKSYQQAFQQAINGLMNY---NVPLLNEELVKLMVKALSY 809
Query: 748 D---SLSENDIQVFYT-PEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
+ ++++ +++T P + +Q ++V ++N ++ K + EEQ
Sbjct: 810 EPVLAITQQQWSIYHTLPTELFVEKQ----EQLVESRNDRKVKP--KTAEEQ-------- 855
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA-RELLLNEEASIREKVQGVQRN 862
+ E + + + + KK G+ K+E R+ L +A IR+ VQ V
Sbjct: 856 ----RDEESRKRI---------EEKKKIQSGELEKQEKERQKQLAAQAVIRKDVQDVIDR 902
Query: 863 LSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPL 920
L L + MA +NP F + ++ + L++ I + KL C
Sbjct: 903 LHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVFEKLICCVP--- 959
Query: 921 CNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPV 980
+ LD + A I P++ E + L ++I+ + S L
Sbjct: 960 SRFKLDRSFARHYIYIINNIYYR---PTLSEI----QILGFIQKILTHIRESIAKEALSG 1012
Query: 981 DSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQ 1040
+F + +PII+ L + + + ++++ KH PR MIS L V+ +
Sbjct: 1013 FAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISSLIIVVSTNSRLE 1072
Query: 1041 AAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVST 1100
A + + +L G++ +++ + G+ +K V VR CL A++ IP++ + S +
Sbjct: 1073 AQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIYSPSFVWEDKYIG 1132
Query: 1101 SLWIAVHDPEKSVAEA-AEDIW--DRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATA 1157
SLW A D + A AE IW D+ K LS S +NV + A A
Sbjct: 1133 SLWFARFDNHDANTSALAEKIWLATNQPTQLPEDF---MKLLSDSTFNVNSETRKINALA 1189
Query: 1158 LDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD-VLRTKD 1212
+ E + I + LF +Y ++ R +A AL + ++ +
Sbjct: 1190 IKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALSGLGNAIVEPEV 1249
Query: 1213 LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272
L + T +I R L D +V ++ G+ II++ G L FE +L + + +
Sbjct: 1250 LKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEAFLARPDNGTGE 1309
Query: 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ 1332
D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S C++ L+ S +
Sbjct: 1310 EDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGISKCIAQLIPSFK 1369
Query: 1333 DEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391
+ L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I TL+ + D+
Sbjct: 1370 KQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSILDTLQSYIEDKK 1429
Query: 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451
R+GAL AFECLC +GR+FEPY+I +LP LLV F D V VR+A A+A+MSQL
Sbjct: 1430 HPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDATADTAKAIMSQL 1489
Query: 1452 SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511
S GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP IVPKLT VL DT
Sbjct: 1490 SGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTIVPKLTYVLNDT 1549
Query: 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 1571
H KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ LL T +V+T+D
Sbjct: 1550 HTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENLLSTNYVHTIDP 1609
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631
SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L+P +K VL+DP
Sbjct: 1610 ASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNILMPVMKTVLLDP 1668
Query: 1632 IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691
IPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQGLSEVLA+L
Sbjct: 1669 IPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQGLSEVLASLDI 1728
Query: 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
F ++ +++ + R VR+G L++F + P SLG F YL +VLP +L GLAD+++
Sbjct: 1729 SRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLPQVLKGLADDSD 1788
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L GDLLFK+AGT+
Sbjct: 1789 PVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFGDLLFKLAGTTA 1848
Query: 1812 KALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866
+ + S DD+ + G I ++LG+++ +L++LYM+R D + SVRQ L
Sbjct: 1849 QEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFDNNSSVRQKVLL 1908
Query: 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926
+WK IV+NTPKTL+EI+P L+ +ISS+ S++ E+RQ++ + LG++V KL +R+LP I+P
Sbjct: 1909 IWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSKLSDRILPEILP 1968
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986
IL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALCD +++VRE+A
Sbjct: 1969 ILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALCDPLIDVREAAA 2027
Query: 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---TALDGLKQILSVRTTAVLPHILPK 2043
AF L+ + G +A +EI+P L+ L++ D ALDGL+Q++ VR++ VLP ++PK
Sbjct: 2028 KAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVRSSIVLPVLIPK 2087
Query: 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVT 2102
L+ P+S N AL +LA AG GL HL TI+P+L+ + + + + KEAA ++
Sbjct: 2088 LLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNAKEIKEAAVSIC 2147
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP-NMISTLIVL 2161
IDE+G ++L+ L++ +IR + LIG FY + +V E P ++ +L+ L
Sbjct: 2148 KSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNT--MVTEYPEELLLSLLSL 2205
Query: 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221
+D D+ AA AL + S+ K+ +Y+ V + I ++ + IPGF
Sbjct: 2206 FNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEEVST----IPGF 2260
Query: 2222 CLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2281
CLPK L +LP+ + GL+ G+++ REQA L +I TS +LK FV+ ITGPLI +IG
Sbjct: 2261 CLPKGLASVLPVLISGLMYGTSDQREQATNTLRTVINHTSADALKPFVMQITGPLILVIG 2320
Query: 2282 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341
D+FPWQVKSAIL TLS++I K ++K FL QLQ TFIKCL DS + VR++AA ALG L
Sbjct: 2321 DKFPWQVKSAILQTLSLLISKSPASMKIFLHQLQPTFIKCLSDSHKNVRTNAASALGLLM 2380
Query: 2342 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
LS+ VD LV L++ + +D+ +E+ L AL+ + + K V A + + + D +Y
Sbjct: 2381 TLSSSVDQLVNSLITGISTADSISQESKLRALQSIFEKKPK-VEQATLDKAIATIVDFLY 2439
Query: 2402 HDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWA--ARHGSVLVFATFLRH 2459
D +R A +G S+C L +L Q + SPS + +R+G L +
Sbjct: 2440 QPSDDLRSMVAQTIGASSKCF--TSLTELNQFIKTNLISPSQSVLSRYGKSLALGEIFKA 2497
Query: 2460 NPSAI--SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517
+ + S SP +I+ +++ +DEK P+RE+S +L+ + P T D+
Sbjct: 2498 SGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV----ASPL--TYAKDL 2551
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA-LFGPALAECLKDGSTPVRLA 2576
+ S+ + D SS V AL+ +K K+N ++ + P + + + P++LA
Sbjct: 2552 VPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRLKERTNLPLKLA 2611
Query: 2577 AERCAVHAFQLTRGS 2591
AER VH+ Q+ + S
Sbjct: 2612 AERTLVHSLQIFKES 2626
|
Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating gcn2 kinase activity. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q10105|GCN1_SCHPO Translational activator gcn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/1956 (33%), Positives = 1079/1956 (55%), Gaps = 127/1956 (6%)
Query: 711 EQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQG 770
++ AAI S+S ++ + P+++ F ++ S+S D++++ TPEG+L
Sbjct: 743 KETAAIASISMIVFVAPEESIPLFVNVFRNQLLHLNISSVSSTDLEIWKTPEGVLWDN-- 800
Query: 771 VYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKK 830
++ K++K+ + YE + V + SAK+ + K
Sbjct: 801 -----VLEKKSSKKLDKNTKDYETKRWEAEVRAKQSAKKPA------------------K 837
Query: 831 ADKGKTAKEEARELLLNEEASIREKVQ----GVQRNLSLMLSALGEMAIANPVFAHSQLP 886
K + A +A+ L+ EA IR +V ++R L ++ S LGE P
Sbjct: 838 LSKDQQALVDAQ---LDAEAKIRSRVNLIALSLERGLGIIRS-LGEAVQLAPALWVEDAI 893
Query: 887 SLVKFVDPLLQS-PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDL 945
++ F + L S P + ++AY+ + + + +++L I+ V+S
Sbjct: 894 DVLLFHNVLKYSEPFLKNLAYDTFLLTLKASGFSERLGDRSYSSSLASILAHTFSVNSS- 952
Query: 946 IPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD 1005
++ E K+ I+ L + + F +FP++ + + + D+
Sbjct: 953 -ENIKELTKS---------ILYKLRFAIEQNYFEPQMFACIFPLLYDLTFNITNSDEEDE 1002
Query: 1006 V-LQMLYKHMDPLLPLP-------RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN 1057
LQ+L + L R ++I L H+L + P+ ++L LC GL
Sbjct: 1003 AELQLLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHST 1062
Query: 1058 EVASALHGVYTKDVH----VRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ + + H +R A L A++ E +++ ++D ++
Sbjct: 1063 YTDEELNLLLSNLFHPESSIRSAVLQALQAFDL-------SRFEFIKEIFLELYDDNETN 1115
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTL 1172
A A I + G D T + L + + ++ ++L LDE+ + Q L
Sbjct: 1116 ASIAHQISTQNGLDATETSFFELQIFFTQDSDYLQQIIGKSLIDLLDEFEELGQFIPKEL 1175
Query: 1173 FSLY----------------IRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVI 1216
Y I+ +G D G + R+ +A++ + L + L
Sbjct: 1176 MRTYRENALPSAPEYDEYGIIKKETIGRD---LGRIARESVAVSFFHISKYLSSNLLLPF 1232
Query: 1217 MTFLISRALA-------DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ FL++ + A D + V +ML AG + I + G V L +FE LN +
Sbjct: 1233 LEFLLTASEAEAQIPVTDASQKVSSKMLEAGKLAIFQSGAHQVEALMELFEQKLNVDSLP 1292
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ D +RE V+ G +A+HL +DP++ V+D LL VL+TPSE+VQ AV+ CL PL++
Sbjct: 1293 TDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLSTPSESVQLAVAVCLPPLVK 1352
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
++ L ++LM S +++GAA+GLAG+VKG+GI + + + I +L E +++
Sbjct: 1353 KSLGKSKEYYELLSNKLMNSTSLADQKGAAYGLAGLVKGYGIKAFQDFNILDSLSELISN 1412
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
R +A R+ AL A E LG FEPY+ +LPLLL +F D VREA A + +MS
Sbjct: 1413 RQNATHRQVALFAVEAFSRILGIYFEPYLPDLLPLLLTSFGDNANEVREATMDAVKQIMS 1472
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509
QLSA GVKL+LP+LL GL + WR+K++SV++LG M+Y AP+QLS LP I+PKL+EVLT
Sbjct: 1473 QLSAFGVKLLLPTLLDGLNEYNWRSKKASVEILGLMSYMAPKQLSVFLPTIIPKLSEVLT 1532
Query: 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569
D+H +V++ +L + G VI NPEI +LVPTLL L+D +T +L+ LL+T+FV+ +
Sbjct: 1533 DSHSQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTRYTDDALEALLKTSFVHYL 1592
Query: 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
D PSLAL++PI+ GLRER+A TK+++A+I G M SL TEP+++ Y+ L+P +++VL+
Sbjct: 1593 DPPSLALVIPILKYGLRERNAGTKRQSAKIFGLMASL-TEPENLAVYLESLMPRLREVLI 1651
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
DP+P+ R+ AA+A+GSLI +GE+ FP L+ L + L+S+ S V+R GAAQGLSE+LA L
Sbjct: 1652 DPVPDTRATAAKALGSLIEKLGEKKFPTLIPELFNVLRSECSEVDRQGAAQGLSEILAGL 1711
Query: 1690 GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749
G E +LP+I++N S +R+ +++L YLP + G +FQ YL + +P IL GLAD+
Sbjct: 1712 GLARLEDVLPEILKNTSSPVPHIRESFISLLIYLPATFGSRFQPYLARAIPPILSGLADD 1771
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
+E V+ A+L A ++V +YAT S+ LLLP +E G+F++ WRIR SSV+L+GDL+FK+AG
Sbjct: 1772 SELVQTASLRAAKMIVNNYATKSVDLLLPELEKGLFDNAWRIRLSSVQLVGDLVFKLAGI 1831
Query: 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869
+ KAL E ++EG ++ +A+++++G+++ + +L+ LY+VR D++ VR A+ +WK
Sbjct: 1832 NRKALQE-DEEEEGTHSDVSRKALLDIIGQERHDRILSTLYIVRQDIAAVVRTPAIQIWK 1890
Query: 1870 TIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILS 1929
IV NTP+T++EI+P L + ++S+L SSS++RR + ++LG+L++K G VLP ++P+L
Sbjct: 1891 AIVVNTPRTVREILPTLTSIIVSNLNSSSNDRRTMCVKSLGDLLKKAGFDVLPQLLPVLK 1950
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
+GL+ ++ R GVCI L E++ SA QL + D+ + +R AL D LEVRE+A AF
Sbjct: 1951 QGLESANSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRRALMDGDLEVRETAAEAF 2010
Query: 1990 STLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049
+L G +A+D+++P LL LE + S+ AL L++I+S R++ + P ++P L+ P+
Sbjct: 2011 DSLQSILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPV 2070
Query: 2050 SAFNAHALGALAEVAGPGLNFHLGTILPAL----LSAMGDDDMDVQSLAKEAAETVTL-V 2104
SAFNA AL +LA+VAG LN L +IL AL L++ GDD + + A + V L V
Sbjct: 2071 SAFNARALSSLAQVAGVTLNKRLPSILNALMESSLASTGDDLVALNG----AIDKVNLSV 2126
Query: 2105 IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164
D+EG++ L++ R +A + F++N KL + + I L D
Sbjct: 2127 KDQEGLQILMAHFYSFSESEDFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFITLFED 2186
Query: 2165 SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224
V AA A + +V+++ K+ S + + ++ R + +P F +
Sbjct: 2187 KSQDVVVAAVAAQNTLVSALRKDQLDSLVSIAYHSL--------RDVGSQGVNLPAFEVA 2238
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284
+ + +LPIFL GL+ G+ + REQ+ALG+ +++ T L+ FV ITGPLIRIIG+RF
Sbjct: 2239 QGVNSILPIFLYGLMHGTMDQREQSALGIADIVLKTEPSKLRPFVTQITGPLIRIIGERF 2298
Query: 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD-STRTVRSSAALALGKLSAL 2343
P +VK AIL TL+II+ K L+PFLPQLQ TF KCL D S+ +RS AA ALG L L
Sbjct: 2299 PVEVKCAILYTLNIILSKISTFLRPFLPQLQRTFAKCLGDPSSEVIRSRAATALGTLITL 2358
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403
TR+ P++ +L+S + DAG+R+A+L AL V+ +G++++ A + +L ++
Sbjct: 2359 QTRLAPIITELVSGARTPDAGVRKAMLNALFAVVSKSGQNMNEASAEAIEQLLDEISAES 2418
Query: 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQ-ELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
+H+ V A + G + + D Q LL+ ++L+L + SVL+ ++
Sbjct: 2419 SEHM-VICAKLYGALFSHLPDAQAKQLLESKVLSLEIQSEF-----SVLILNAAVKFGSQ 2472
Query: 2463 AI---SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILA 2519
I +S + SI+ +SL+ E + E ALG+ LL I N +V+ L
Sbjct: 2473 KIIELKLSDIVCSIIS--TASLQKE-VTIAENGILALGKALLADIPQSFGNAKNLVEALK 2529
Query: 2520 SVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
+ A S + RR AL ++ V+K N S I H+++ PA+ C++ PV+LAAE
Sbjct: 2530 VNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPVKLAAEA 2589
Query: 2580 CAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 2615
+ FQL + K+I L+ R F ++
Sbjct: 2590 AFLALFQLVEDDSVL---NKYIETLEGPRARSFVDY 2622
|
Acts as a translation activator that mediates translational control by regulating gcn2 kinase activity. Translational activator of gcn4. May be involved in sensing charged tRNA and stimulating the kinase activity of gcn2 in amino acid-starved cells. Required for the phosphorylation of eIF-2-alpha by the protein kinase gcn2. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/1624 (35%), Positives = 917/1624 (56%), Gaps = 80/1624 (4%)
Query: 1015 DPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELC--LGLQPNE--VASALHGVYTKD 1070
DP +PR+ ++ VL +L +PS N LC + + PN+ + L + + +
Sbjct: 991 DP--SIPRISIVEVLLSLL-SLPSKAKIAKDCFNALCQSISVAPNQEDLDMILSNLLSPN 1047
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
VR L + + L ++ S ++I D + S E A+ IW+ +
Sbjct: 1048 QFVRSTILETLD-----NEFELEPFMKYSPEVFICRFDSDPSNREIADFIWEFNKFVVND 1102
Query: 1131 DY-SGLFKALSHSNYNVRLAAAEALA----TALDEYPDSIQGSLSTLFSLY--------- 1176
+ LF + + +RL AA A A + +S + L+ L + Y
Sbjct: 1103 ELLKSLFPLFNQDDSGLRLFAANAYAFGAVSLFTSEENSSKDYLNDLLNFYKEKAKPLEP 1162
Query: 1177 -IRDIGL---GGDNVDAGWLGRQGIALALHSAADVLRTKDLPV--IMTFLISRA-LADTN 1229
+ GL W GR +A+ L A +D V I+ FL+ L D
Sbjct: 1163 ILDQFGLVLVSASEQKDPWQGRSTVAITLKIMAKAFSAEDDTVVNIIKFLVDDGGLVDRE 1222
Query: 1230 ADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289
VR M AG+ +I HG N L PIFE L+ ++E V+I G LA+
Sbjct: 1223 PIVRQEMKEAGVELITLHGSQNSKDLIPIFEEALSSSTDSA-----LKENVIILYGTLAR 1277
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQ 1345
HL + D ++H ++++LL L+TPS +Q+AVS+C++PL+ Q + D L+ +LL+
Sbjct: 1278 HLQQSDARIHTIIERLLSTLDTPSADIQQAVSACIAPLVFQFKQKVGDYLGILMEKLLNP 1337
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405
+ S R+GAA+G+AG+VKG+GIS+L ++ I L E D+ KRRE F+
Sbjct: 1338 TVASSM---RKGAAWGIAGLVKGYGISALSEFDIIRNLIEAAEDKKEPKRRESVGFCFQY 1394
Query: 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK 1465
L E LG+ FEPYVI++LP +L D V VR+A A +A+M+ + GVK ++P +
Sbjct: 1395 LSESLGKFFEPYVIEILPNILKNLGDAVPEVRDATARATKAIMAHTTGYGVKKLIPVAVS 1454
Query: 1466 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525
L++ AWRTK+ SVQLLG MAY P QLS L IVP++ VL D+H +V+ A +L++
Sbjct: 1455 NLDEIAWRTKRGSVQLLGNMAYLDPTQLSASLSTIVPEIVGVLNDSHKEVRKAADESLKR 1514
Query: 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585
G VI+NPEI LVP LL + DP +T+ +LD L+QT FV+ +D PSLAL++ I+HRG+
Sbjct: 1515 FGEVIRNPEIQKLVPVLLQAIGDPTKYTEEALDSLIQTQFVHYIDGPSLALIIHIIHRGM 1574
Query: 1586 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+RSA K+KA +IVGNM LV + KD+IPY+ L+ EV+ +VDP+P R+ AARA+G+
Sbjct: 1575 HDRSANIKRKACKIVGNMAILV-DTKDLIPYLQQLIDEVEIAMVDPVPNTRATAARALGA 1633
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
L+ +GEE FPDL+ LLD L ++ + +R G+AQ L+EV++ LG + +LP I+
Sbjct: 1634 LVERLGEEQFPDLIPRLLDTLSDESKSGDRLGSAQALAEVISGLGLTKLDEMLPTILAGV 1693
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
++ RA +R+G++ L +LP G QF Y+ Q++ IL GLAD +E++RD AL AG ++V
Sbjct: 1694 TNFRAYIREGFMPLLLFLPVCFGSQFAPYINQIIQPILSGLADNDENIRDTALKAGKLIV 1753
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
++YAT ++ LLLP +E G+F++N RIR SSV+L G+LLF+V G S + E +D +
Sbjct: 1754 KNYATKAVDLLLPELERGMFDENDRIRLSSVQLTGELLFQVTGISSRN--EFSEEDGDHN 1811
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
E G+ +++VLG+D+R+ +LAAL++ R+D S VR + +WK +V NTP+ +KEI+P
Sbjct: 1812 GEFSGK-LVDVLGQDRRDRILAALFVCRNDTSGIVRATTVDIWKALVPNTPRAVKEILPT 1870
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS-RRQGVC 1944
L +++ LASSS+ R +A + LG+LVR++G L ++P L L + S S RQGVC
Sbjct: 1871 LTGMIVTHLASSSNVLRNIAAQTLGDLVRRVGGNALSQLLPSLEESLIETSNSDSRQGVC 1930
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004
I L E++ SA + F ++ IRTAL D VRE+A L+F G A+DE+
Sbjct: 1931 IALYELIESASTETISQFQSTIVNIIRTALIDESATVREAAALSFDVFQDVVGKTAVDEV 1990
Query: 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064
+P LLH LE SD AL GL++I+S ++ + P ++P L+ P+ AF A ALG+LAEVA
Sbjct: 1991 LPYLLHMLESSDNSDFALLGLQEIMSKKSDVIFPILIPTLLAPPIDAFRASALGSLAEVA 2050
Query: 2065 GPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTL-VIDEEGVESLVSELLKGV 2121
G L L I+ AL+ A+ +D + + A + V L V D+EG+ L+ +++ +
Sbjct: 2051 GSALYKRLSIIINALVDAIIGTSEDESTKGALELALDRVFLSVNDDEGLHPLLQQIMSLL 2110
Query: 2122 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181
+ R + + F+ + L PN +S I+ L D D V + ALS ++
Sbjct: 2111 KSDNIEKRIAVLERLPNFFDKTVLDFDVYIPNFVSHAILSLDDEDQRVVNGNFNALSTLL 2170
Query: 2182 ASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG 2241
V K P+ K+++ A + R+ + + F LP+ +LPIFL GL+ G
Sbjct: 2171 KKVDK---PTLEKLVKPAKQSLALTGRQGQD-----VAAFKLPRGPNCVLPIFLHGLMYG 2222
Query: 2242 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301
S + RE++AL + +++ T +LK FV ITGPLIR++G+RF +K+AIL L+++
Sbjct: 2223 SNDEREESALAIADVVSKTPAANLKPFVSVITGPLIRVVGERFSSDIKAAILFALNVLFI 2282
Query: 2302 KGGIALKPFLPQLQTTFIKCLQDSTR-TVRSSAALALGKLSALSTRVDPLVGDLLS-SLQ 2359
K + L+PF+PQLQ TF+K L D+T T+R AA ALG L RVDPLV +L++ + Q
Sbjct: 2283 KIPMFLRPFIPQLQRTFVKSLSDATNETLRLRAAKALGALIEHQPRVDPLVIELVTGAKQ 2342
Query: 2360 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419
+D G++ A+L AL V+ AG ++ K + +++++ + +D + V+ A ++G +S
Sbjct: 2343 ATDEGVKTAMLKALLEVIMKAGSKLNENSKTNIVNLVEEEMLGSNDKLAVAYAKLIGSLS 2402
Query: 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479
+ + + + +LQ+ + L + ++L +FL+ P+ I + L + + +
Sbjct: 2403 EILSNDEAHKILQDKV-LNADLDGETGKFAILTLNSFLKDAPTHIFNTGLIDEFVSYILN 2461
Query: 2480 SLKDEKFPLREASTKALGRLLLHQ---------------IQSGPANTTVVVDILASVVSA 2524
+++ E T A G+LLL + + G N ++++ L+ V
Sbjct: 2462 AIRSPDVYFGENGTIAAGKLLLLEGEKRSPFVKKDAAEPFKIGDENINLLINELSKAVLQ 2521
Query: 2525 LHDDSSEVRRRALSALKSVAKAN-PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVH 2583
+S++VRR AL ++++A+ I + + GP++ CL+D P++LAAE+ +
Sbjct: 2522 PASNSTDVRRLALVVIRTLARFKFDECIKQYFDVVGPSVFSCLRDPVIPIKLAAEKAYLA 2581
Query: 2584 AFQL 2587
F+L
Sbjct: 2582 LFKL 2585
|
Acts as a translation activator that mediates translational control by regulating GCN2 kinase activity. Translational activator of GCN4. May be involved in sensing charged tRNA and stimulating the kinase activity of GCN2 in amino acid-starved cells. Required in vivo for the phosphorylation of eIF-2-alpha on 'Ser-52' by the protein kinase GCN2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O94489|EF3_SCHPO Elongation factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 158/276 (57%), Gaps = 10/276 (3%)
Query: 1379 IAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSDQVVAV 1436
+ + + + L D+N A RE L E + + EPY++++LP ++ +D+ AV
Sbjct: 53 VFSAISKQLNDKN-ATARERVLKGLEAVANHGSVAADVEPYLVELLPAVIAKVADKQNAV 111
Query: 1437 REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQ 1495
R+AA A++A++ + VK ++PS+L+ + W K +S+QLL + AP QLS
Sbjct: 112 RDAAIAASKAIVRCTTPYAVKAIVPSVLESIHTTGKWNEKMNSLQLLDVLVEVAPSQLSY 171
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
LP+I+P ++E + DT +V+ + + +V ++I N +I +P L+ + P +
Sbjct: 172 SLPQIIPVVSESMWDTKAEVKKQSKETMTKVCTLIANADIDRFIPELINCIAHP-EEVPE 230
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
++ L TTFV V AP+L+++VP++ RGL ERS K+K A I+ NM LV +P+ + P
Sbjct: 231 TIHSLGATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVIIDNMSKLVEDPQVVAP 290
Query: 1616 YIGLLLP---EVKKVLVDPIPEVRSVAARAIGSLIR 1648
++ LLP +K + D PE RSV RAI +L R
Sbjct: 291 FLPKLLPGLYHIKDTIGD--PECRSVVQRAITTLER 324
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14134|ELF1_SCHPO mRNA export factor elf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 161/278 (57%), Gaps = 5/278 (1%)
Query: 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQ 1432
+LK G L ++ S RE A++ F + + LG E + LP +L +FSD+
Sbjct: 50 TLKTTGFLDGLERAARNKKSGFHREAAMIGFATVIKNLGTPSEVVFLPYLPTILDSFSDR 109
Query: 1433 VVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKA--WRTKQSSVQLLGAMAYCA 1489
VR+AA+ AA+A++ L A V+ ++PSL+ L+D + W +K +++QLLG++A +
Sbjct: 110 GEVVRQAAKMAAQALLDCLPAGAVETRLIPSLISYLDDSSIKWPSKVAALQLLGSLASSS 169
Query: 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549
P+ ++ + ++P + E + DT P++ A T + + SV++N +I +P L+ + P
Sbjct: 170 PKAVADYMAALIPCIKERMHDTKPEISRAAITCMLNLCSVVENNDIIPHIPKLVDCMAHP 229
Query: 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ + + L TTFV TV++ +LA+LVPI+ R L +RS + I N+C LV +
Sbjct: 230 -ETLEACIKDLSATTFVATVESVALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288
Query: 1610 PKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSL 1646
P + ++ L+P+V+++ +PEVR++A+ A+ +L
Sbjct: 289 PAEASDFLPELIPDVERIAQTAAMPEVRALASHALTTL 326
|
Has a direct role in the mRNA export process. Appears to act within the rae1 mediated mRNA export pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P29551|EF3_PNECA Elongation factor 3 OS=Pneumocystis carinii GN=TEF3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAA 1440
TL E + +++ R E AL A + + EPY++++LP +L ++V AVR A
Sbjct: 53 TLEEQIESKDTLAR-EQALKALLLTLDATNKRVEPYLVRLLPRVLKQVGLEKVAAVRTQA 111
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499
A ++ ++ VK +L + ++ W K + +LL + AP Q+S LP+
Sbjct: 112 STVAEDIIKTMNPYAVKTILSHVTNSIKTSGKWMEKMCAFRLLDMLVEKAPCQMSYRLPE 171
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
++P L+E + DT +++ + + V ++I NP+I +P L+ + P + ++
Sbjct: 172 LIPILSESMWDTRTDIKNQARKTMTSVCTLISNPDIDKFIPVLIDCIAQP-EKVPETIHT 230
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L TTFV V A +L+++VP+++RGL ER K+K+A I+ NMC LV +P + P++
Sbjct: 231 LGATTFVQEVHASTLSIMVPLLYRGLNERETTIKRKSAVIIDNMCKLVEDPYIIAPFLPK 290
Query: 1620 LLP---EVKKVLVDPIPEVRSVAARAIGSLIR--GMGEENFPDLVS 1660
L+P +K+ + D PE RSV R++ +LIR + E P++++
Sbjct: 291 LIPTLEHIKETIGD--PECRSVVNRSLATLIRVGNVKEGKIPEVLN 334
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Pneumocystis carinii (taxid: 4754) |
| >sp|P25997|EF3_CANAL Elongation factor 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 162/326 (49%), Gaps = 17/326 (5%)
Query: 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRRE 1397
++S LL +L +D E A + F SS+ ++ + E L + +K +
Sbjct: 13 VLSELLSKLQVADNKDE-------AASNISTFLNSSIVEHDVPVEFFEDLKKQIQSKDAK 65
Query: 1398 GALLAFECL-----CEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452
+L A + L EPYV+ ++ + V D+ V+ AA A A+ S ++
Sbjct: 66 VSLAALDAYKHIASTNGLSPSVEPYVVDLVSEVAVKAGDKNKDVQTAASDALLAIASAIT 125
Query: 1453 AQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511
VK +LP L+ L + W K + ++ + + A Q++ +P+++P L+E + DT
Sbjct: 126 PTAVKAILPKLIDNLTNTNKWTEKVAILRAVSQLVDTAKAQIALRMPELIPVLSESMWDT 185
Query: 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 1571
+V+ A + + I N +I +P L+ + P + ++ +L TTFV+ V
Sbjct: 186 KKEVKEAATATMTKSTETIDNKDIEKFIPQLISCIAKPTE-VPETVHLLGATTFVSEVTM 244
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD- 1630
+L+++ P++ RGL ER K+KAA IV NMC LV +P+ + P++ LLP +K +
Sbjct: 245 ATLSIMAPLLSRGLAERDTAIKRKAAVIVDNMCKLVEDPQIVAPFMDKLLPGLKNNFANM 304
Query: 1631 PIPEVRSVAARAIGSLIR--GMGEEN 1654
PE R V RA+ +L R +GE +
Sbjct: 305 ADPEAREVTQRALNTLRRVGAVGEND 330
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
| >sp|P53978|EF3B_YEAST Elongation factor 3B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWR 1473
EPY++ +P + + V+ AA A +A+ S ++ VK +LP L+ LE W+
Sbjct: 85 EPYIVATVPSVCSKAGSKDNDVQLAATKALKAIASAVNPVAVKALLPHLIHSLETSNKWK 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + ++++ + A +Q++ +P+++P L+E + DT V+ A T + + + N
Sbjct: 145 EKVAVLEVISVLVDAAKEQIALRMPELIPVLSESMWDTKKGVKEAATTTITKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P L+ + +PN+ ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPKLIECIANPNE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLAERETSIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+KAA I+ NMC LV +P+ + P++G LLP +K + D PE R V +A+ +L R
Sbjct: 264 RKAAVIIDNMCKLVEDPQVVAPFLGKLLPGLKNNFATIAD--PEAREVTLKALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Weakly expressed functional homolog of translation elongation factor 3A (YEF3), not required for survival. Can complement loss of YEF3 when expressed from the YEF3 or ADH1 promoters. Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEF3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWR 1473
EPY++Q++P + ++ ++ A ++++ ++ +K +LP L + E W+
Sbjct: 85 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQ 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + + + AM A Q++ +P+++P L+E + DT +V++A A+ + + N
Sbjct: 145 EKIAILAAISAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P+L+ + DP + ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+K+A I+ NMC LV +P+ + P++G LLP +K + D PE R V RA+ +L R
Sbjct: 264 RKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD--PEAREVTLRALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2622 | ||||||
| 296085156 | 2636 | unnamed protein product [Vitis vinifera] | 0.995 | 0.989 | 0.833 | 0.0 | |
| 359476554 | 2613 | PREDICTED: translational activator GCN1 | 0.989 | 0.992 | 0.832 | 0.0 | |
| 359476556 | 2461 | PREDICTED: translational activator GCN1 | 0.932 | 0.993 | 0.821 | 0.0 | |
| 356506010 | 2616 | PREDICTED: translational activator GCN1 | 0.990 | 0.993 | 0.782 | 0.0 | |
| 255562017 | 2459 | Translational activator GCN1, putative [ | 0.931 | 0.993 | 0.804 | 0.0 | |
| 449477742 | 2611 | PREDICTED: LOW QUALITY PROTEIN: translat | 0.989 | 0.993 | 0.775 | 0.0 | |
| 449470206 | 2611 | PREDICTED: translational activator GCN1- | 0.989 | 0.993 | 0.776 | 0.0 | |
| 240254318 | 2610 | protein ILITYHIA [Arabidopsis thaliana] | 0.981 | 0.986 | 0.750 | 0.0 | |
| 357512395 | 2751 | Translational activator GCN1 [Medicago t | 0.995 | 0.949 | 0.738 | 0.0 | |
| 334183637 | 2696 | protein ILITYHIA [Arabidopsis thaliana] | 0.966 | 0.940 | 0.736 | 0.0 |
| >gi|296085156|emb|CBI28651.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4435 bits (11503), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2183/2618 (83%), Positives = 2393/2618 (91%), Gaps = 9/2618 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSN--------HSAKRESANREVSGAGKKDIGKSTKKADKGKTAK 838
GRFRMY++QD D V SN HS ++E+A+REV+G GKKDIGKSTKKADKGKTAK
Sbjct: 785 GRFRMYDDQDDGDDVNSNLSVKRETNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAK 844
Query: 839 EEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQS 898
EEARELLL EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+S
Sbjct: 845 EEARELLLREEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRS 904
Query: 899 PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KE 957
P+V +VAYE +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N +
Sbjct: 905 PVVSEVAYETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERP 964
Query: 958 SLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPL 1017
SL LFERI++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+
Sbjct: 965 SLGLFERIISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPI 1024
Query: 1018 LPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMAC 1077
LPLPRLRM+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMAC
Sbjct: 1025 LPLPRLRMLSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMAC 1084
Query: 1078 LNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFK 1137
LNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFK
Sbjct: 1085 LNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFK 1144
Query: 1138 ALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197
ALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGI
Sbjct: 1145 ALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGI 1204
Query: 1198 ALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFP 1257
ALALHSAADVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFP
Sbjct: 1205 ALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFP 1264
Query: 1258 IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQ 1317
IFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQ
Sbjct: 1265 IFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQ 1324
Query: 1318 RAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKY 1377
RAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+
Sbjct: 1325 RAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKF 1384
Query: 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVR 1437
GIA LREGLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR
Sbjct: 1385 GIATVLREGLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVR 1444
Query: 1438 EAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497
+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL
Sbjct: 1445 DGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1504
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
PKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSL
Sbjct: 1505 PKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSL 1564
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
DILLQTTFVN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI
Sbjct: 1565 DILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1624
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677
GLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSG
Sbjct: 1625 GLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSG 1684
Query: 1678 AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737
AAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQ
Sbjct: 1685 AAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQ 1744
Query: 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1797
VLPAILDGLADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE
Sbjct: 1745 VLPAILDGLADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1804
Query: 1798 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857
LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS
Sbjct: 1805 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVS 1864
Query: 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG 1917
+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLG
Sbjct: 1865 ISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLG 1924
Query: 1918 ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
ERVLP IIPIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS
Sbjct: 1925 ERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1984
Query: 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037
EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVL
Sbjct: 1985 TPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVL 2044
Query: 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097
PHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSAM DDD DVQ LAK+A
Sbjct: 2045 PHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSAMSDDDTDVQKLAKKA 2104
Query: 2098 AETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST 2157
AETV LVIDEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KNSKLYLVDEAPNMI+T
Sbjct: 2105 AETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKNSKLYLVDEAPNMITT 2164
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
LIVLLSDSDS TVA AWEALSRV SVPKEV PSYIK++RDA+STSRDKERRKKKGGP+L
Sbjct: 2165 LIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVSTSRDKERRKKKGGPVL 2224
Query: 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277
IPGFCLPKALQPLLP+FLQGLISGSAELREQAA GLGELIEVTSEQ+LKEFVIPITGPLI
Sbjct: 2225 IPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGLGELIEVTSEQALKEFVIPITGPLI 2284
Query: 2278 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD+TRTVRSSAALAL
Sbjct: 2285 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDNTRTVRSSAALAL 2344
Query: 2338 GKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLK 2397
GKLSALSTRVDPLVGDLLSSLQVSD G+REAILTALKGVL+HAGKSVS AV+ RVY +LK
Sbjct: 2345 GKLSALSTRVDPLVGDLLSSLQVSDGGVREAILTALKGVLQHAGKSVSVAVRTRVYVLLK 2404
Query: 2398 DLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFL 2457
D V+HDDD VR SAASILGI+SQ MEDGQL+DLLQEL +L SS SW+ARHGS+L ++ L
Sbjct: 2405 DFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQELSSLDSSLSWSARHGSILTISSML 2464
Query: 2458 RHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517
RH+PS+I SP+F S++ LK +LKDEKFP+RE STKALGRLLLH++QS P+NT +D+
Sbjct: 2465 RHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETSTKALGRLLLHRVQSDPSNTAAHLDV 2524
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
L+ +VSAL DDSSEVRRRALSALK+VAKANPSA+M H+ +FGPALAECLKDG+TPVRLAA
Sbjct: 2525 LSPMVSALQDDSSEVRRRALSALKAVAKANPSALMTHITIFGPALAECLKDGNTPVRLAA 2584
Query: 2578 ERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 2615
ERCA+HAFQLT+G+E +Q AQKFITGLDARRLSKFPEH
Sbjct: 2585 ERCALHAFQLTKGTENVQAAQKFITGLDARRLSKFPEH 2622
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476554|ref|XP_002267871.2| PREDICTED: translational activator GCN1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4417 bits (11455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2172/2610 (83%), Positives = 2381/2610 (91%), Gaps = 16/2610 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
+NHS ++E+A+REV+G GKKDIGKSTKKADKGKTAKEEARELLL
Sbjct: 785 E---------------TNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAKEEARELLL 829
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+SP+V +VAY
Sbjct: 830 REEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRSPVVSEVAY 889
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLFERI 965
E +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N + SL LFERI
Sbjct: 890 ETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERPSLGLFERI 949
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+LPLPRLRM
Sbjct: 950 ISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPILPLPRLRM 1009
Query: 1026 ISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIP 1085
+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMACLNAVKCIP
Sbjct: 1010 LSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMACLNAVKCIP 1069
Query: 1086 AVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYN 1145
AVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFKALSH NYN
Sbjct: 1070 AVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFKALSHINYN 1129
Query: 1146 VRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205
VRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGIALALHSAA
Sbjct: 1130 VRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGIALALHSAA 1189
Query: 1206 DVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK 1265
DVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFPIFENYLNK
Sbjct: 1190 DVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFPIFENYLNK 1249
Query: 1266 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLS 1325
K SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLS
Sbjct: 1250 KTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLS 1309
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
PLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+GIA LRE
Sbjct: 1310 PLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKFGIATVLRE 1369
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
GLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR+ AECAAR
Sbjct: 1370 GLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVRDGAECAAR 1429
Query: 1446 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT
Sbjct: 1430 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1489
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
EVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQTTF
Sbjct: 1490 EVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQTTF 1549
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
VN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK
Sbjct: 1550 VNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1609
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
KVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSGAAQGLSEV
Sbjct: 1610 KVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSGAAQGLSEV 1669
Query: 1686 LAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQVLPAILDG
Sbjct: 1670 LAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQVLPAILDG 1729
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK
Sbjct: 1730 LADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1789
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
VAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS+SVRQAAL
Sbjct: 1790 VAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVSISVRQAAL 1849
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSII 1925
HVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLGERVLP II
Sbjct: 1850 HVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLGERVLPLII 1909
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS EVRESA
Sbjct: 1910 PILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSTPEVRESA 1969
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045
GLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV
Sbjct: 1970 GLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2029
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 2105
HLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSAM DDD DVQ LAK+AAETV LVI
Sbjct: 2030 HLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSAMSDDDTDVQKLAKKAAETVVLVI 2089
Query: 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165
DEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KNSKLYLVDEAPNMI+TLIVLLSDS
Sbjct: 2090 DEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKNSKLYLVDEAPNMITTLIVLLSDS 2149
Query: 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK 2225
DS TVA AWEALSRV SVPKEV PSYIK++RDA+STSRDKERRKKKGGP+LIPGFCLPK
Sbjct: 2150 DSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVSTSRDKERRKKKGGPVLIPGFCLPK 2209
Query: 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 2285
ALQPLLP+FLQGLISGSAELREQAA GLGELIEVTSEQ+LKEFVIPITGPLIRIIGDRFP
Sbjct: 2210 ALQPLLPVFLQGLISGSAELREQAAQGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFP 2269
Query: 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345
WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD+TRTVRSSAALALGKLSALST
Sbjct: 2270 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSALST 2329
Query: 2346 RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDD 2405
RVDPLVGDLLSSLQVSD G+REAILTALKGVL+HAGKSVS AV+ RVY +LKD V+HDDD
Sbjct: 2330 RVDPLVGDLLSSLQVSDGGVREAILTALKGVLQHAGKSVSVAVRTRVYVLLKDFVHHDDD 2389
Query: 2406 HVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAIS 2465
VR SAASILGI+SQ MEDGQL+DLLQEL +L SS SW+ARHGS+L ++ LRH+PS+I
Sbjct: 2390 QVRNSAASILGILSQYMEDGQLSDLLQELSSLDSSLSWSARHGSILTISSMLRHSPSSIC 2449
Query: 2466 MSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL 2525
SP+F S++ LK +LKDEKFP+RE STKALGRLLLH++QS P+NT +D+L+ +VSAL
Sbjct: 2450 TSPVFPSVVYCLKDNLKDEKFPVRETSTKALGRLLLHRVQSDPSNTAAHLDVLSPMVSAL 2509
Query: 2526 HDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAF 2585
DDSSEVRRRALSALK+VAKANPSA+M H+ +FGPALAECLKDG+TPVRLAAERCA+HAF
Sbjct: 2510 QDDSSEVRRRALSALKAVAKANPSALMTHITIFGPALAECLKDGNTPVRLAAERCALHAF 2569
Query: 2586 QLTRGSEYIQGAQKFITGLDARRLSKFPEH 2615
QLT+G+E +Q AQKFITGLDARRLSKFPEH
Sbjct: 2570 QLTKGTENVQAAQKFITGLDARRLSKFPEH 2599
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476556|ref|XP_003631859.1| PREDICTED: translational activator GCN1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 4186 bits (10856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2072/2522 (82%), Positives = 2262/2522 (89%), Gaps = 76/2522 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+VSKNA CRVA QAS+LHIVMQ SFR RR
Sbjct: 1 MEKQSKFQSNIGCYRLLKWSCLLLSKSRFASVSKNAFCRVATVQASVLHIVMQGSFRVRR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+TFF LFSQS DIYK Y +ELKDARI YK SPELI LLLEF S+ P LFE+C+PIFL
Sbjct: 61 ACKRTFFCLFSQSLDIYKIYIEELKDARISYKDSPELIWLLLEFSSRKPLLFEQCKPIFL 120
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
DIYVKAVLNA+E+P KGLSE+F PLFTHM EDF+SIV+P++IKMLKRNPEI+LES+G+L
Sbjct: 121 DIYVKAVLNAREEPAKGLSEAFHPLFTHMVHEDFKSIVVPSAIKMLKRNPEIVLESVGVL 180
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LKSVNLDLSKYA EILSVVL+Q RHADEGR+ GAL+I+ CLS+KSSNPDA+EAMF +IKA
Sbjct: 181 LKSVNLDLSKYAIEILSVVLAQARHADEGRRHGALSIVCCLSQKSSNPDAIEAMFNSIKA 240
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRLAFPYQR+GM+NALQELSNA EGKYLNSLS TIC FLLSCYKD+GNEEVKLA
Sbjct: 241 VIGGSEGRLAFPYQRVGMINALQELSNAPEGKYLNSLSPTICGFLLSCYKDDGNEEVKLA 300
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
IL A+ASW RSAD +Q D++SF SGLKEKE LRRGHLRCLR I NTDA++ VSSLLG
Sbjct: 301 ILPALASWVARSADALQRDVVSFLVSGLKEKEGLRRGHLRCLRFIFKNTDAIILVSSLLG 360
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PL+QLVKTGFTKA QRLDGIYA L+V KIAA DIKAEETV KEKLWSL+SQNEPSLVP +
Sbjct: 361 PLVQLVKTGFTKAAQRLDGIYALLLVAKIAAVDIKAEETVAKEKLWSLISQNEPSLVPIS 420
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +DCMACV+LL VL+VEH HRVLETFS +L+QL+L CHPSWDIR+ A+D T
Sbjct: 421 MASKLSTEDCMACVDLLEVLIVEHLHRVLETFSKNVLVQLILFLVCHPSWDIRRAAYDNT 480
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
+KII++ P L+EALL EF+NFLS+VGEKI + KTSDT++ +D+QVPFLPSVEV VK L+V
Sbjct: 481 KKIISAAPKLAEALLSEFTNFLSVVGEKIQLLKTSDTENSLDAQVPFLPSVEVLVKALIV 540
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S ALA PSA ++IFCSHHP IVGTGKR+AVW
Sbjct: 541 ISSEALAAVPSAIMQIIFCSHHPCIVGTGKRNAVW------------------------- 575
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
+ LLG LMS N LEQ+AAINSLSTLMS+ PKDTY+ FEKH + PD HD++SEND
Sbjct: 576 -RGLLGPTALMSPNHLEQEAAINSLSTLMSVIPKDTYIEFEKHFSNFPDRQSHDTVSEND 634
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
IQ+F+TPEGMLSSEQGVY+AE VA KN +Q+KGRFR + +NHS ++E+A+R
Sbjct: 635 IQIFHTPEGMLSSEQGVYVAESVATKNMRQAKGRFR----------IETNHSGRKETASR 684
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
EV+G GKKDIGKSTKKADKGKTAKEEARELLL EEASIR+KV +++NLSLML ALGEMA
Sbjct: 685 EVTGVGKKDIGKSTKKADKGKTAKEEARELLLREEASIRQKVGVIKKNLSLMLRALGEMA 744
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
IANPVFAHS+LPSLVKFV+PLL+SP+V +VAYE +VKL+RCTA PLCNWALDIATALRLI
Sbjct: 745 IANPVFAHSELPSLVKFVEPLLRSPVVSEVAYETMVKLARCTASPLCNWALDIATALRLI 804
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VTEEVHV +LIPSVGE N + SL LFERI++GL+VSCKSGPLPVDSFTFVFP
Sbjct: 805 VTEEVHVLLELIPSVGEGETNERPSLGLFERIISGLSVSCKSGPLPVDSFTFVFP----- 859
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
VLYH LGVVP+YQA+IG ALNELCLG
Sbjct: 860 ----------------------------------VLYHALGVVPTYQASIGPALNELCLG 885
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
LQ +EVA AL+GVY KDVHVRMACLNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSV
Sbjct: 886 LQSDEVAPALYGVYAKDVHVRMACLNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSV 945
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AE AEDIWDR GY FGTDYSGLFKALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLF
Sbjct: 946 AELAEDIWDRCGYVFGTDYSGLFKALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLF 1005
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD+G G DNVDA W+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1006 SLYIRDVGFGEDNVDASWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1065
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGI+IIDKHGRDNVSLLFPIFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1066 GRMINAGILIIDKHGRDNVSLLFPIFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAK 1125
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYG
Sbjct: 1126 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYG 1185
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAGVVKGFGISSLKK+GIA LREGLADRNSAK REGALL FECLCEKLGRL
Sbjct: 1186 ERRGAAFGLAGVVKGFGISSLKKFGIATVLREGLADRNSAKCREGALLGFECLCEKLGRL 1245
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVR+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1246 FEPYVIQMLPLLLVSFSDQVVAVRDGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1305
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNP
Sbjct: 1306 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNP 1365
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI++LVPTLLMGLTDPND+TKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1366 EISALVPTLLMGLTDPNDYTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETK 1425
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEE
Sbjct: 1426 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEE 1485
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLVSWLLD LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVR
Sbjct: 1486 NFPDLVSWLLDTLKSDASNVERSGAAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVR 1545
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFKYLPRSLG+QFQNYLQQVLPAILDGLADENESVRDAAL AGHVLVEHYATTSL
Sbjct: 1546 DGYLTLFKYLPRSLGLQFQNYLQQVLPAILDGLADENESVRDAALSAGHVLVEHYATTSL 1605
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI
Sbjct: 1606 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1665
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IE LGRDKRNEVLAALYMVR+DVS+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+S
Sbjct: 1666 IEGLGRDKRNEVLAALYMVRADVSISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITS 1725
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGR+LGELVRKLGERVLP IIPIL++GLKDP SRRQGVCIGLSEVMAS
Sbjct: 1726 LASSSSERRQVAGRSLGELVRKLGERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMAS 1785
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLLSFMDELIPTIRTALCDS EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LE
Sbjct: 1786 AGKSQLLSFMDELIPTIRTALCDSTPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLE 1845
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073
DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG
Sbjct: 1846 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLG 1905
Query: 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSA 2133
+LPALLSAM DDD DVQ LAK+AAETV LVIDEEGVE L+SELLKGVGDNQASIRRSS+
Sbjct: 1906 IVLPALLSAMSDDDTDVQKLAKKAAETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSS 1965
Query: 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
+LIGYF+KNSKLYLVDEAPNMI+TLIVLLSDSDS TVA AWEALSRV SVPKEV PSYI
Sbjct: 1966 FLIGYFFKNSKLYLVDEAPNMITTLIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYI 2025
Query: 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGL 2253
K++RDA+STSRDKERRKKKGGP+LIPGFCLPKALQPLLP+FLQGLISGSAELREQAA GL
Sbjct: 2026 KIVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGL 2085
Query: 2254 GELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313
GELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ
Sbjct: 2086 GELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2145
Query: 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTAL 2373
LQTTFIKCLQD+TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD G+REAILTAL
Sbjct: 2146 LQTTFIKCLQDNTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDGGVREAILTAL 2205
Query: 2374 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433
KGVL+HAGKSVS AV+ RVY +LKD V+HDDD VR SAASILGI+SQ MEDGQL+DLLQE
Sbjct: 2206 KGVLQHAGKSVSVAVRTRVYVLLKDFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQE 2265
Query: 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 2493
L +L SS SW+ARHGS+L ++ LRH+PS+I SP+F S++ LK +LKDEKFP+RE ST
Sbjct: 2266 LSSLDSSLSWSARHGSILTISSMLRHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETST 2325
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553
KALGRLLLH++QS P+NT +D+L+ +VSAL DDSSEVRRRALSALK+VAKANPSA+M
Sbjct: 2326 KALGRLLLHRVQSDPSNTAAHLDVLSPMVSALQDDSSEVRRRALSALKAVAKANPSALMT 2385
Query: 2554 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFP 2613
H+ +FGPALAECLKDG+TPVRLAAERCA+HAFQLT+G+E +Q AQKFITGLDARRLSKFP
Sbjct: 2386 HITIFGPALAECLKDGNTPVRLAAERCALHAFQLTKGTENVQAAQKFITGLDARRLSKFP 2445
Query: 2614 EH 2615
EH
Sbjct: 2446 EH 2447
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506010|ref|XP_003521781.1| PREDICTED: translational activator GCN1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 4091 bits (10609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2046/2614 (78%), Positives = 2320/2614 (88%), Gaps = 16/2614 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT--EMSPEIASFLVDIIFKTFSVY 61
A+S +L+S++ VSTSST R RIFR ++ + + ++ EMS E+AS L DIIF+T ++Y
Sbjct: 3 AESLQSLVSLSELVSTSSTNHRVRIFRREIPAFLNSSTSEMSTELASLLTDIIFRTVAIY 62
Query: 62 DDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKS 121
DD SRKAVDDVI K LG FMKTFA ALVQ MEKQSKFQSHVG YRLL WSCLLLSKS
Sbjct: 63 DDLRSRKAVDDVIVKALGGTVFMKTFAGALVQNMEKQSKFQSHVGGYRLLSWSCLLLSKS 122
Query: 122 QFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDA 181
+FA VSKNALCRVAAAQASLL +V++RSFRERRAC++ FFHLFSQ PDIYK Y +EL++
Sbjct: 123 KFAAVSKNALCRVAAAQASLLSLVLKRSFRERRACRKKFFHLFSQLPDIYKVYMEELRNG 182
Query: 182 RIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFT 241
RIP+K SPEL+ LLLEF S+SPSLF + + FLDIYV A+L+AKEKP K L+E+F PL+
Sbjct: 183 RIPFKDSPELLMLLLEFSSRSPSLFGEFKVTFLDIYVNAILSAKEKPGKSLTEAFHPLYL 242
Query: 242 HMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHAD 301
MS EDFQSIV+P+S+KMLKRNPEI+LES+GILLKSVNLDLSKYA EILSVVL+Q RHAD
Sbjct: 243 QMSHEDFQSIVIPSSVKMLKRNPEIVLESVGILLKSVNLDLSKYAAEILSVVLAQARHAD 302
Query: 302 EGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSN 361
EGR+ GAL I+ LS+KSSNPDAL+ MF AIKAVI GSEGRLAFPYQR+GMVNA+QELS
Sbjct: 303 EGRRDGALAIVQSLSQKSSNPDALDTMFNAIKAVIKGSEGRLAFPYQRVGMVNAIQELSY 362
Query: 362 ATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASG 421
A +GKYL SLS TIC FLLS YKD+GNEEVK+ ILSA+ASWA RS DIIQ L+SF ASG
Sbjct: 363 APDGKYLISLSRTICDFLLSYYKDDGNEEVKIVILSAIASWAVRSTDIIQESLVSFLASG 422
Query: 422 LKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVG 481
LKEKE LR+G LR L IC N DAVL++ L+G L+QLVKTGFTKAVQRLDGIYA L+V
Sbjct: 423 LKEKETLRKGFLRSLHAICKNEDAVLKMLPLIGTLMQLVKTGFTKAVQRLDGIYALLLVA 482
Query: 482 KIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHR 541
KIAA DIKAEET+ KEK+W+L+SQNEPS+VP +M SKLS++D M CV+LL VLLVEH
Sbjct: 483 KIAAVDIKAEETLVKEKIWALISQNEPSVVPISMASKLSIEDNMTCVDLLEVLLVEHLQC 542
Query: 542 VLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGE 601
L FSV+L+LQL++ F CHP WDIR+MA+D RKII S P LS+ LLLEFS +L+L+GE
Sbjct: 543 TLSNFSVRLMLQLMIFFMCHPRWDIRRMAYDVARKIIPSAPQLSKDLLLEFSKYLTLIGE 602
Query: 602 KIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVG 661
K + KTSD+D +D QVPF+PSVEV VK LL+++ AL P + R+I CSHHP +VG
Sbjct: 603 KHLALKTSDSDISLDPQVPFIPSVEVLVKALLIMSPAALKHAPESFFRIILCSHHPCVVG 662
Query: 662 TGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLST 721
K DAVW+RL KCL+ GF VI+++SA+VGN +VLLG +GL SAN LEQQAAI SL
Sbjct: 663 GAKIDAVWKRLSKCLQTQGFVVIDVISANVGNFLQVLLGPMGLKSANPLEQQAAILSLCN 722
Query: 722 LMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
LMSI P DTY+ FEK+L +LP+ + HD+L ENDIQ+F TPEGMLS+EQGVY+AE V AKN
Sbjct: 723 LMSIIPGDTYIEFEKNLLNLPERFAHDTLLENDIQIFLTPEGMLSTEQGVYVAESVTAKN 782
Query: 782 TKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA 841
TKQ DH SNHS +R+ +RE +GAGKKD GK+ KKADKGKTAKEEA
Sbjct: 783 TKQ--------------DHTRSNHSVRRDQPSREAAGAGKKDTGKAAKKADKGKTAKEEA 828
Query: 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIV 901
RELLL EEAS+R++V+ +Q+NLSLML LG+MAIAN VFAHS+LPS+VKFV+PL++SPIV
Sbjct: 829 RELLLKEEASVRDRVREIQKNLSLMLRTLGDMAIANSVFAHSRLPSMVKFVEPLMRSPIV 888
Query: 902 GDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCL 961
D A+E +VKL+RCTA PLC+WALDI+TALRLIVT+EVH+ DL+PSV E N+ L
Sbjct: 889 SDEAFETMVKLARCTAPPLCDWALDISTALRLIVTDEVHLLLDLVPSVTEEEFNERPHGL 948
Query: 962 FERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLP 1021
FERI++GL++SCKSG LPVDSF+F+FPIIERILL K+T HDDVL++ Y H+DP LPLP
Sbjct: 949 FERILDGLSISCKSGALPVDSFSFIFPIIERILLCSKKTKFHDDVLRIFYLHLDPHLPLP 1008
Query: 1022 RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAV 1081
R+RM+SVLYHVLGVVP+YQA+IG ALNEL LGLQP EVASAL+GVY KDVHVRMACLNAV
Sbjct: 1009 RIRMLSVLYHVLGVVPAYQASIGPALNELSLGLQPAEVASALYGVYAKDVHVRMACLNAV 1068
Query: 1082 KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSH 1141
KCIPAV+ RSLPEN+EV+TS+WIA+HDPEKSVA+ AEDIWD YG+DFGTD+SGL+KALSH
Sbjct: 1069 KCIPAVANRSLPENVEVATSIWIALHDPEKSVAQVAEDIWDHYGFDFGTDFSGLYKALSH 1128
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
NYNVR+AAAEALA ALDE+PDSIQ SLSTLFSLYI D+G+G DNVDAGWLGRQGIALAL
Sbjct: 1129 INYNVRVAAAEALAAALDEHPDSIQESLSTLFSLYILDMGVGDDNVDAGWLGRQGIALAL 1188
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
H+AAD+LRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDK+G+DNVSLLFPIFEN
Sbjct: 1189 HAAADILRTKDLPVVMTFLISRALADLNADVRGRMINAGILIIDKNGKDNVSLLFPIFEN 1248
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
YLNK A DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS
Sbjct: 1249 YLNKTAPDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1308
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+CLSPLMQS QD+A L +RL+DQ+MKS+KYGERRGAAFGLAG+VKGFGIS LKKY I
Sbjct: 1309 ACLSPLMQSKQDDAAALFNRLMDQMMKSEKYGERRGAAFGLAGLVKGFGISCLKKYRIVI 1368
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAE 1441
TL+E LA+RNSAK REGALL FECLCE LGR+FEPYVIQMLPLLLV+FSDQV AVREAAE
Sbjct: 1369 TLQESLAERNSAKSREGALLGFECLCETLGRIFEPYVIQMLPLLLVSFSDQVNAVREAAE 1428
Query: 1442 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV
Sbjct: 1429 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1488
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
PKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLL GL+DPN+HTKYSLDILL
Sbjct: 1489 PKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLKGLSDPNEHTKYSLDILL 1548
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
QTTFVN++DAPSLALLVPIVHRGLRERSA+TKK+AAQIVGNMCSLVTEPKDMIPYIGLLL
Sbjct: 1549 QTTFVNSIDAPSLALLVPIVHRGLRERSADTKKRAAQIVGNMCSLVTEPKDMIPYIGLLL 1608
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
PEVKKVLVDPIPEVRSVAARAIGSLI GMGEENFPDLV WL D LKSDNSNVERSGAAQG
Sbjct: 1609 PEVKKVLVDPIPEVRSVAARAIGSLIGGMGEENFPDLVPWLFDTLKSDNSNVERSGAAQG 1668
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
LSEVLAALG +FEH+LPDIIR+CSHQ+ASVRDGYLTLFKYLPRSLGVQFQNYL QVLPA
Sbjct: 1669 LSEVLAALGIDFFEHVLPDIIRHCSHQKASVRDGYLTLFKYLPRSLGVQFQNYLPQVLPA 1728
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND+WRIRQSSVELLGD
Sbjct: 1729 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDSWRIRQSSVELLGD 1788
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
LLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIE+LGRDKRNEVLAALYMVR+DVSLSVR
Sbjct: 1789 LLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEILGRDKRNEVLAALYMVRADVSLSVR 1848
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921
QAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLASSSSERRQVAGR+LGELVRKLGERVL
Sbjct: 1849 QAALHVWKTIVANTPKTLREIMPVLMDTLITSLASSSSERRQVAGRSLGELVRKLGERVL 1908
Query: 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
P IIPILS+GL DP++SRRQGVC+GLSEVMASAGKSQLL+FM+ELIPTIRTALCDS+ EV
Sbjct: 1909 PLIIPILSQGLNDPNSSRRQGVCVGLSEVMASAGKSQLLTFMNELIPTIRTALCDSVSEV 1968
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041
RESAGLAFSTL+KSAGM AIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPHIL
Sbjct: 1969 RESAGLAFSTLYKSAGMLAIDEIVPTLLHALEDDETSDTALDGLKQILSVRTSAVLPHIL 2028
Query: 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV 2101
PKLVH PLSAFNAHALGALAEVAGPGL+FHL T+LP LLSAMGDDD +VQ+LAKEA+ETV
Sbjct: 2029 PKLVHPPLSAFNAHALGALAEVAGPGLDFHLCTVLPPLLSAMGDDDKEVQTLAKEASETV 2088
Query: 2102 TLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL 2161
LVIDEEG+E L+SEL+KGV D+QA++RRSS+YLIGYF+KNSKLYLVDEAPNMISTLI+L
Sbjct: 2089 VLVIDEEGIEPLMSELVKGVNDSQAAVRRSSSYLIGYFFKNSKLYLVDEAPNMISTLIIL 2148
Query: 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221
LSDSDS+TV AWEALSRV+ SVPKEV PSYIK++RDA+STSRDKERRKKKGGPILIPGF
Sbjct: 2149 LSDSDSSTVTVAWEALSRVIISVPKEVLPSYIKLVRDAVSTSRDKERRKKKGGPILIPGF 2208
Query: 2222 CLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2281
CLPKALQP+LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG
Sbjct: 2209 CLPKALQPILPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2268
Query: 2282 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341
DRFPWQVKSAILSTL+ +I+KGGI+LKPFLPQLQTTF+KCLQDSTRTVRSSAALALGKLS
Sbjct: 2269 DRFPWQVKSAILSTLTTMIKKGGISLKPFLPQLQTTFVKCLQDSTRTVRSSAALALGKLS 2328
Query: 2342 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
LSTRVDPLV DLLSSLQ SD G+ EAILTALKGVLKHAGK+VSSAV+ R YSVLK+L++
Sbjct: 2329 GLSTRVDPLVSDLLSSLQGSDGGVSEAILTALKGVLKHAGKNVSSAVRTRFYSVLKELIH 2388
Query: 2402 HDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNP 2461
DD+ VR A+SILGI++Q +ED QL +L+QEL +LA+SPSW RHGS+L ++ +NP
Sbjct: 2389 DDDEIVRTYASSILGILTQYLEDVQLTELIQELSSLANSPSWPPRHGSILTISSLFHYNP 2448
Query: 2462 SAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASV 2521
+ I S LF +I+D L+ +LKDEKFPLRE STKALGRLLL++ Q P++T + D+L+ +
Sbjct: 2449 ATICSSSLFSTIVDCLRDTLKDEKFPLRETSTKALGRLLLYRSQVDPSDTLLYKDVLSLL 2508
Query: 2522 VSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCA 2581
VS+ HD+SSEVRRRALSA+K+VAKANPSAIM H + GPALAEC+KDG+TPVRLAAERCA
Sbjct: 2509 VSSTHDESSEVRRRALSAIKAVAKANPSAIMSHSTIVGPALAECMKDGNTPVRLAAERCA 2568
Query: 2582 VHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 2615
+HAFQLT+GSE +Q AQK+ITGLDARRLSKFPE+
Sbjct: 2569 LHAFQLTKGSENVQAAQKYITGLDARRLSKFPEY 2602
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562017|ref|XP_002522017.1| Translational activator GCN1, putative [Ricinus communis] gi|223538821|gb|EEF40421.1| Translational activator GCN1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 4067 bits (10548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2028/2520 (80%), Positives = 2223/2520 (88%), Gaps = 78/2520 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKF SHVGCYRLL WSCLLL +SQFA VSKNA+CRVAAAQAS L V+ RSFRERR
Sbjct: 1 MEKQSKFHSHVGCYRLLNWSCLLLCQSQFAAVSKNAVCRVAAAQASTLSTVIHRSFRERR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+ FFHLFSQSP IYK YT+E KDARIPYK SPEL+ LLLEF S + S FE+ +P+FL
Sbjct: 61 ACKRLFFHLFSQSPHIYKIYTEEFKDARIPYKDSPELMWLLLEF-SIASSSFEQVKPVFL 119
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
D YVKA+LNAKEKP LSESF PLF H+S EDFQ++V+P++ KMLKRNPEI+LES+GIL
Sbjct: 120 DTYVKAILNAKEKPATRLSESFQPLFMHLSHEDFQNVVVPSAAKMLKRNPEIVLESVGIL 179
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LK V LDLSKYA+EILSVVL Q RH DE R+ AL I+ CLS+KSSNPDALEAMF A+KA
Sbjct: 180 LKFVKLDLSKYASEILSVVLPQARHTDESRRLTALAIVRCLSQKSSNPDALEAMFTAVKA 239
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRL FPYQR+GM NALQELS A EGKYL+ LS TIC FLLSCYK+EGNEEVKLA
Sbjct: 240 VIGGSEGRLQFPYQRVGMFNALQELSYAPEGKYLSGLSCTICSFLLSCYKNEGNEEVKLA 299
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
+LSA+ASWA RSAD +Q D++SF ASGLKEKE LRRGHLRCLRVIC N DA+LQ+SSLLG
Sbjct: 300 VLSAIASWAARSADAVQPDIVSFIASGLKEKEVLRRGHLRCLRVICKNNDAILQISSLLG 359
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PLIQLVKTGFTKAVQRLDG+YA LI GKIA+ADIKAEET+ KEK+WSL++QNEPSLV +
Sbjct: 360 PLIQLVKTGFTKAVQRLDGVYALLIAGKIASADIKAEETLAKEKIWSLIAQNEPSLVQIS 419
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +D MACV+LL VLL+EHS R+LE FSV+LLLQL++ CHP+W++RKM+HD+T
Sbjct: 420 MASKLSPEDSMACVDLLEVLLIEHSRRMLEAFSVRLLLQLIVFLLCHPNWEVRKMSHDST 479
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
R+IITSVP LSE L+ EF+NFLS V EK+ TSDTD +D QVPFLPSVEV VK L+V
Sbjct: 480 RRIITSVPQLSEVLITEFTNFLSSVAEKVFSLNTSDTDTSLDPQVPFLPSVEVLVKALIV 539
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S LA PS S +++FCSHHP I+GT +DAVW
Sbjct: 540 ISSATLATSPSISTKILFCSHHPCIIGTANKDAVW------------------------- 574
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
K LLG +GLMS N+ EQQAAINSLSTLMSITP DTY+ FEKHL +L D Y HD LSEND
Sbjct: 575 -KGLLGPMGLMSLNVFEQQAAINSLSTLMSITPSDTYMEFEKHLNNLEDRYSHDMLSEND 633
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
I++F+TPEGMLSSEQGVY+AE +A+KNT+Q+KGRFR+ SNHSAKRE R
Sbjct: 634 IRIFHTPEGMLSSEQGVYVAESIASKNTRQAKGRFRI-----------SNHSAKREPTGR 682
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
E +G G+KD GK KK DKGKTAKEEARELLL EE SIREKVQ VQ NLSL+L ALGEMA
Sbjct: 683 EATGVGRKDAGKLAKKTDKGKTAKEEARELLLKEEESIREKVQDVQNNLSLILRALGEMA 742
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++NPVFAHSQLPSLV+FVD LL+SPIV DVA+E LVKL+RCTA PLCNWALDIATAL LI
Sbjct: 743 VSNPVFAHSQLPSLVRFVDSLLRSPIVSDVAFETLVKLARCTAPPLCNWALDIATALCLI 802
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
T EV V +LIP+VG+ N + SL LFERI+ GL+VSCKSGPLPVDSFTFVFP
Sbjct: 803 ATAEVSVLPNLIPTVGKGETNERPSLGLFERIIAGLSVSCKSGPLPVDSFTFVFP----- 857
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
LYHVLGVVP+YQA++G+ALNELCLG
Sbjct: 858 ----------------------------------ALYHVLGVVPAYQASVGAALNELCLG 883
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ +EVASAL+GVY KDVHVRMACLNA+KCIPAVS+RSLP+N+E++TS+WIA+HDPEK +
Sbjct: 884 LKADEVASALYGVYAKDVHVRMACLNAIKCIPAVSSRSLPQNVEIATSIWIALHDPEKLI 943
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AEAAEDIWDRYG DFGTDYSGLFKALSH NYNVR+A AEALA ALDE PDSIQ SLSTLF
Sbjct: 944 AEAAEDIWDRYGCDFGTDYSGLFKALSHINYNVRIATAEALAAALDENPDSIQESLSTLF 1003
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD G DNVDAGW+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1004 SLYIRDATFGEDNVDAGWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1063
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGIMIIDKHG++NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1064 GRMINAGIMIIDKHGKENVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1123
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS QD+A +LVSR+LDQLMKSDKYG
Sbjct: 1124 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQDDAASLVSRVLDQLMKSDKYG 1183
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAG+VKGFGISSLK YGI A LREGL DRNSAK REGALLAFECLCEKLG+L
Sbjct: 1184 ERRGAAFGLAGIVKGFGISSLKNYGIIAALREGLVDRNSAKSREGALLAFECLCEKLGKL 1243
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1244 FEPYVIQMLPLLLVSFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1303
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAP+QLSQCLP IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP
Sbjct: 1304 TKQSSVQLLGAMAYCAPRQLSQCLPTIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1363
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI+SLVPTLLM LTDPND+TKYSLDILLQTTF+N++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1364 EISSLVPTLLMALTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAETK 1423
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE
Sbjct: 1424 KKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1483
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLV WL D LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPD+IRNCSHQRASVR
Sbjct: 1484 NFPDLVPWLFDTLKSDTSNVERSGAAQGLSEVLAALGTKYFEHVLPDLIRNCSHQRASVR 1543
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFK+LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL
Sbjct: 1544 DGYLTLFKFLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1603
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK+LLEGGSDDEGASTEAHGRAI
Sbjct: 1604 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKSLLEGGSDDEGASTEAHGRAI 1663
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IEVLGR+KRNEVLAALYMVR+D+SLSVRQAALHVWKTIVANTPKTLKEIMP+LMNTLISS
Sbjct: 1664 IEVLGREKRNEVLAALYMVRTDMSLSVRQAALHVWKTIVANTPKTLKEIMPILMNTLISS 1723
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGRALGELVRKLGERVLP IIPILS+GL++P ASRRQGVCIGLSEVMAS
Sbjct: 1724 LASSSSERRQVAGRALGELVRKLGERVLPLIIPILSQGLRNPDASRRQGVCIGLSEVMAS 1783
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLL+FMDELIPTIRTALCDS+LEVRESAGLAFSTL+KSAGMQAIDEIVPTLLHALE
Sbjct: 1784 AGKSQLLNFMDELIPTIRTALCDSMLEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALE 1843
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073
DD+TSDTALDGLKQILSVRT AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN HL
Sbjct: 1844 DDETSDTALDGLKQILSVRTAAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNVHLS 1903
Query: 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSA 2133
T+LPALLSAMG +D DVQ+LAKEAAETV LVIDEEGVE L++ELLKGVGD+ AS+RRSS+
Sbjct: 1904 TVLPALLSAMGGEDKDVQTLAKEAAETVVLVIDEEGVEYLIAELLKGVGDSMASVRRSSS 1963
Query: 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
YLIGYF+KNSKLYL DEAPNMISTLIVLLSD DS TVA AWEALSRVV+SVPKEV PSY+
Sbjct: 1964 YLIGYFFKNSKLYLADEAPNMISTLIVLLSDMDSATVAIAWEALSRVVSSVPKEVLPSYL 2023
Query: 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGL 2253
K++RDA+STSRDKERRKKKGGP+LIPGFCLPKALQPL+PIFLQGLISGSA+LREQAALGL
Sbjct: 2024 KLVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLVPIFLQGLISGSADLREQAALGL 2083
Query: 2254 GELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313
GELIEVTSEQ+LK+FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG+ALKPFLPQ
Sbjct: 2084 GELIEVTSEQALKDFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGMALKPFLPQ 2143
Query: 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTAL 2373
LQTTFIKCLQD+TRTVR+SAALALGKLSALSTRVDPLV DLLSSLQ SDAG+REAIL AL
Sbjct: 2144 LQTTFIKCLQDNTRTVRTSAALALGKLSALSTRVDPLVSDLLSSLQASDAGVREAILMAL 2203
Query: 2374 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433
KGVLK+AGKSVS+AVKIRV+S L DL++HDDD VR+S+ASILGI SQ ME QL DLLQ+
Sbjct: 2204 KGVLKYAGKSVSNAVKIRVFSQLNDLIHHDDDQVRISSASILGITSQYMEAAQLIDLLQQ 2263
Query: 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 2493
L N ASSPSW +RHGSVL ++ LRHNPS + S F SI+D LK LKDEKFPLR+ S
Sbjct: 2264 LSNSASSPSWVSRHGSVLTISSLLRHNPSLVITSAEFPSIIDCLKDGLKDEKFPLRDTSI 2323
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553
+ALGRLLLHQI S + T+ VDIL+S VSAL DDSSEVRRRALSALK+VAKA+P I
Sbjct: 2324 EALGRLLLHQIYSDQSKTSSYVDILSSTVSALRDDSSEVRRRALSALKAVAKASPPFITT 2383
Query: 2554 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFP 2613
HV++ GPALAECL+D STPVRLAAERCAVH FQLT+G+E IQ +QKFITGLDARRLSK+P
Sbjct: 2384 HVSIIGPALAECLRDSSTPVRLAAERCAVHTFQLTKGTENIQASQKFITGLDARRLSKYP 2443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477742|ref|XP_004155110.1| PREDICTED: LOW QUALITY PROTEIN: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4053 bits (10510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2027/2613 (77%), Positives = 2283/2613 (87%), Gaps = 18/2613 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIFR+ + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFRNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS KYGERRG AFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSXKYGERRGVAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKK AQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKXAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102
KLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSAMG DD +VQ LAKEAAETV
Sbjct: 2029 KLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSAMGGDDEEVQKLAKEAAETVV 2088
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KNSKLYLVDEAPN+ISTLIVLL
Sbjct: 2089 LVIDEDGAEFLISELLKGVSDNQATIRRSSSYLIGYFFKNSKLYLVDEAPNLISTLIVLL 2148
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
SDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+STSRDKERRK+KGG ILIPG C
Sbjct: 2149 SDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVSTSRDKERRKRKGGAILIPGLC 2208
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
LPKALQPLLPIFLQGLISGSAE REQAALGLGELIE+TSEQ LKEFVI ITGPLIRIIGD
Sbjct: 2209 LPKALQPLLPIFLQGLISGSAETREQAALGLGELIEMTSEQVLKEFVIQITGPLIRIIGD 2268
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342
RFPWQVKSAILSTLSIIIRKGG+ALKPFLPQLQTTFIKCLQD+TRTVRSSAALALGKLSA
Sbjct: 2269 RFPWQVKSAILSTLSIIIRKGGMALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSA 2328
Query: 2343 LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 2402
LSTR+DPLVGDLLSSLQ SD GIREAILTALKGV+KHAGK+VSS V+ RVY++LKDL+
Sbjct: 2329 LSTRIDPLVGDLLSSLQASDGGIREAILTALKGVMKHAGKTVSSGVRTRVYTLLKDLIRQ 2388
Query: 2403 DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
+DD VR+SAASILGI+SQ +ED +L LL+EL+N+ASS SW ARHGS+L ++ LRH PS
Sbjct: 2389 EDDQVRISAASILGIISQYLEDDELTGLLEELINMASS-SWHARHGSMLTISSILRHKPS 2447
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
A+ +F SIL LK++LKDEKFP+RE STKALGRLLL+QIQ A +DIL S+V
Sbjct: 2448 AVCQFAMFSSILGCLKTALKDEKFPIRETSTKALGRLLLYQIQRSSATN---LDILTSLV 2504
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAV 2582
SAL DDSSEVRR+ALSA+K+VAK NPS + H +L GPALAECL+DGSTPVRLAAERCA+
Sbjct: 2505 SALQDDSSEVRRKALSAIKAVAKENPSFTVTHASLIGPALAECLRDGSTPVRLAAERCAL 2564
Query: 2583 HAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 2615
H FQLT+GSE +Q AQKFITGL+ARRLSK PE
Sbjct: 2565 HCFQLTKGSENVQAAQKFITGLEARRLSKLPEQ 2597
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470206|ref|XP_004152809.1| PREDICTED: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 4049 bits (10501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2028/2613 (77%), Positives = 2284/2613 (87%), Gaps = 18/2613 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIF + + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFLNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS+KYGER GAAFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSEKYGERCGAAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKKAAQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKAAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102
KLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSAMG DD +VQ LAKEAAETV
Sbjct: 2029 KLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSAMGGDDEEVQKLAKEAAETVV 2088
Query: 2103 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KNSKLYLVDEAPN+ISTLIVLL
Sbjct: 2089 LVIDEDGAEFLISELLKGVSDNQAAIRRSSSYLIGYFFKNSKLYLVDEAPNLISTLIVLL 2148
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
SDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+STSRDKERRK+KGG ILIPG C
Sbjct: 2149 SDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVSTSRDKERRKRKGGAILIPGLC 2208
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
LPKALQPLLPIFLQGLISGSAE REQAALGLGELIE+TSEQ LKEFVI ITGPLIRIIGD
Sbjct: 2209 LPKALQPLLPIFLQGLISGSAETREQAALGLGELIEMTSEQVLKEFVIQITGPLIRIIGD 2268
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342
RFPWQVKSAILSTLSIIIRKGG+ALKPFLPQLQTTFIKCLQD+TRTVRSSAALALGKLSA
Sbjct: 2269 RFPWQVKSAILSTLSIIIRKGGMALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSA 2328
Query: 2343 LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 2402
LSTR+DPLVGDLLSSLQ SD GIREAILTALKGV+KHAGK+VSS V+ RVY++LKDL+
Sbjct: 2329 LSTRIDPLVGDLLSSLQASDGGIREAILTALKGVMKHAGKTVSSGVRTRVYTLLKDLIRQ 2388
Query: 2403 DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
+DD VR+SAASILGI+SQ +ED +L LL+EL+N+ASS SW ARHGS+L ++ LRH PS
Sbjct: 2389 EDDQVRISAASILGIISQYLEDDELTGLLEELINMASS-SWHARHGSMLTISSILRHKPS 2447
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
A+ +F SIL LK++LKDEKFP+RE STKALGRLLLHQIQ A +DIL S+V
Sbjct: 2448 AVCQFAMFSSILGCLKTALKDEKFPIRETSTKALGRLLLHQIQRSSATN---LDILTSLV 2504
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAV 2582
SAL DDSSEVRR+ALSA+K+VAK NPS + H +L GPALAECL+DGSTPVRLAAERCA+
Sbjct: 2505 SALQDDSSEVRRKALSAIKAVAKENPSFTVTHASLIGPALAECLRDGSTPVRLAAERCAL 2564
Query: 2583 HAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 2615
H FQLT+GSE +Q AQKFITGL+ARRLSK PE
Sbjct: 2565 HCFQLTKGSENVQAAQKFITGLEARRLSKLPEQ 2597
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254318|ref|NP_176659.6| protein ILITYHIA [Arabidopsis thaliana] gi|332196168|gb|AEE34289.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3977 bits (10313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1946/2592 (75%), Positives = 2261/2592 (87%), Gaps = 18/2592 (0%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 23 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 82
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 83 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 142
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 143 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 202
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 203 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 262
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 263 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 322
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 323 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 382
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 383 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 442
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 443 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 502
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 503 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 562
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 563 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 622
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 623 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 682
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 683 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 742
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 743 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 787
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 788 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 847
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 848 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 907
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 908 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 965
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FPI+ERILLS KRT LHDDVLQ+LY H+DP+LPLPRLRMISVLYHVLGVVP+YQA++
Sbjct: 966 TFIFPILERILLSSKRTKLHDDVLQILYMHLDPMLPLPRLRMISVLYHVLGVVPAYQASV 1025
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1026 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1085
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1086 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1145
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1146 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1205
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1206 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1265
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1266 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1325
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1326 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1385
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1386 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1445
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEVLTDTHPKVQSAGQ AL
Sbjct: 1446 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVLTDTHPKVQSAGQLAL 1505
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
QQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALLVPIVHR
Sbjct: 1506 QQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALLVPIVHR 1565
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
GLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+
Sbjct: 1566 GLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAV 1625
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+ILPD+IR
Sbjct: 1626 GSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENILPDLIR 1685
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAALGAGHV
Sbjct: 1686 HCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAALGAGHV 1745
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823
LVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG
Sbjct: 1746 LVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1805
Query: 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883
ASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPKTLKEIM
Sbjct: 1806 ASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPKTLKEIM 1865
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGV 1943
P+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP +RQGV
Sbjct: 1866 PILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDVDKRQGV 1925
Query: 1944 CIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003
CIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG+QA+DE
Sbjct: 1926 CIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAGLQAMDE 1985
Query: 2004 IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV 2063
I+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLSA NAHALGALAEV
Sbjct: 1986 IIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHALGALAEV 2045
Query: 2064 AGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD 2123
AG G N HLGTILPALLSAMG ++ +VQ LA+EAAE V LVIDEEGVE+L+SELLKGV D
Sbjct: 2046 AGAGFNTHLGTILPALLSAMGGENKEVQELAQEAAERVVLVIDEEGVETLLSELLKGVSD 2105
Query: 2124 NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183
+QASIRRSSAYLIGYF+K+SKLYL+DEAPNMISTLIV+LSDSDSTTVA +WEAL+RV+ S
Sbjct: 2106 SQASIRRSSAYLIGYFFKSSKLYLIDEAPNMISTLIVMLSDSDSTTVAVSWEALARVIGS 2165
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
VPKEV PSYIK++RDA+ST+RDKERRK+KGG ++IPG CLPK+L+PLLP+FLQGLISGSA
Sbjct: 2166 VPKEVLPSYIKLVRDAVSTARDKERRKRKGGYVVIPGLCLPKSLKPLLPVFLQGLISGSA 2225
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303
ELREQAA+GLGELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAIL+TL I+I++G
Sbjct: 2226 ELREQAAIGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILATLIILIQRG 2285
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363
G+ALKPFLPQLQTTF+KCLQDSTRT+RSSAA+ALGKLSALSTR+DPLVGDL++S Q +D+
Sbjct: 2286 GMALKPFLPQLQTTFVKCLQDSTRTIRSSAAVALGKLSALSTRIDPLVGDLMTSFQAADS 2345
Query: 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423
G+REAIL+A++GV+KHAGKS+ AV++R++ +LKDL++H+DD VR+SA S+LG++SQ +E
Sbjct: 2346 GVREAILSAMRGVIKHAGKSIGPAVRVRIFDLLKDLMHHEDDQVRISATSMLGVLSQYLE 2405
Query: 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD 2483
QL+ LLQE+ +L++S +W ARHGSVL ++ L+HNPS I S LF S+L+ LKSSLKD
Sbjct: 2406 AAQLSVLLQEVNDLSASQNWGARHGSVLCISSLLKHNPSTIMTSSLFSSMLNSLKSSLKD 2465
Query: 2484 EKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSV 2543
EKFPLRE+STKALGRLLL Q+ + P+NT VV+D+L+S+VSALHDDSSEVRRRALS+LK+
Sbjct: 2466 EKFPLRESSTKALGRLLLKQLATDPSNTKVVIDVLSSIVSALHDDSSEVRRRALSSLKAF 2525
Query: 2544 AKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITG 2603
AK NPSA M ++++ GP LAECLKDG+TPVRLAAERCA+H FQLT+G+E +Q AQK+ITG
Sbjct: 2526 AKDNPSATMANISVIGPPLAECLKDGNTPVRLAAERCALHVFQLTKGAENVQAAQKYITG 2585
Query: 2604 LDARRLSKFPEH 2615
LDARRLSKFPE
Sbjct: 2586 LDARRLSKFPEQ 2597
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512395|ref|XP_003626486.1| Translational activator GCN1 [Medicago truncatula] gi|355501501|gb|AES82704.1| Translational activator GCN1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 3961 bits (10272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2021/2735 (73%), Positives = 2307/2735 (84%), Gaps = 124/2735 (4%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT----EMSPEIASFLVDIIFKTFS 59
A+S +L+S++ VSTSST +R RIF+ +V + + ++ EMS E+AS L DIIF+T +
Sbjct: 2 AESLQSLVSLSELVSTSSTNQRLRIFQREVPAFLNSSSTSDEMSTELASLLTDIIFRTVA 61
Query: 60 VYDDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLS 119
+YDDR SRKAVDDVI K L FMKTFAAALVQ+MEKQ K QSHVGCYRLL WSCLLLS
Sbjct: 62 IYDDRRSRKAVDDVIVKSLSGTVFMKTFAAALVQSMEKQLKSQSHVGCYRLLSWSCLLLS 121
Query: 120 KSQFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELK 179
KS+F+TVSKNALCRVA+ QASLL++V +RSFRERRACK+ FHLF + PDIYK Y E+K
Sbjct: 122 KSKFSTVSKNALCRVASGQASLLNLVWRRSFRERRACKKKIFHLFKELPDIYKVYVQEVK 181
Query: 180 DARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPL 239
+ IPYK SPEL+ LLLEF ++S SLF + + FLDIYV A+L+AK KP K L E+F PL
Sbjct: 182 NGSIPYKDSPELLLLLLEFSTRSSSLFGEFKSAFLDIYVNAILSAKAKPGKSLIEAFHPL 241
Query: 240 FTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRH 299
+ MS EDF +IVLPA++KMLKRNPEI+LES+GILLKSV LDLSKYA EILSVVL Q RH
Sbjct: 242 YLQMSHEDFGTIVLPAAVKMLKRNPEIVLESVGILLKSVKLDLSKYAAEILSVVLVQARH 301
Query: 300 ADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQEL 359
ADEGR+ AL I+ LS+KSSNPDAL+ MF AIK+VI GSEGRLAFPYQR+GMVNA+QEL
Sbjct: 302 ADEGRRDVALDIVKNLSQKSSNPDALDIMFNAIKSVIKGSEGRLAFPYQRVGMVNAIQEL 361
Query: 360 SNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFA 419
SNA +GKYL +LS TIC FLLSCYKD+GNEEVK+A LSA+ASWA +S +IIQ L+SFFA
Sbjct: 362 SNAPDGKYLINLSQTICDFLLSCYKDDGNEEVKIATLSAIASWADKSTNIIQESLVSFFA 421
Query: 420 SGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLI 479
SGLKEKE LRRG LR LR IC N DAVL++S LL PL+QLVKTGFTKAVQRLDGIYA L+
Sbjct: 422 SGLKEKEILRRGFLRSLRAICKNADAVLKMSPLLVPLVQLVKTGFTKAVQRLDGIYALLL 481
Query: 480 VGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHS 539
VGKIAA DIKAEE + KEK+W+ +SQNEPSL+P +M SKL+V+D +AC++LL VLL+EH
Sbjct: 482 VGKIAAVDIKAEEILVKEKIWATISQNEPSLIPISMASKLAVEDSIACIDLLEVLLLEHL 541
Query: 540 HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLV 599
R L FSV LLQLV+ F CHP WDIR++A + ++IITSVP LSE +L EFS +L+LV
Sbjct: 542 QRTLSNFSVTSLLQLVIFFICHPRWDIRRIACNVAKRIITSVPQLSEDILSEFSKYLNLV 601
Query: 600 GEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSI 659
EK+ + SDTD +D QVPF+PSVEV VK LL+++ A+ P + R+I CSHHP +
Sbjct: 602 EEKVSALRISDTDISLDPQVPFIPSVEVLVKALLIMSPAAMKVAPDSFVRIILCSHHPCV 661
Query: 660 VGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSL 719
VG+ KRDAVW+RL KCL+ GF+VI+IV+A+V N +VLLG +GL SAN LEQ+AAI+SL
Sbjct: 662 VGSAKRDAVWKRLCKCLQTHGFDVIDIVAANVINFVQVLLGPMGLRSANPLEQEAAISSL 721
Query: 720 STLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAA 779
S LMSI P DTY FEKHL +LP+ + H++LSENDIQ+F+TPEGMLS+EQG+Y+AE VA
Sbjct: 722 SNLMSIIPGDTYTEFEKHLLNLPERFSHNALSENDIQIFHTPEGMLSTEQGIYVAESVAF 781
Query: 780 KNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKA-------D 832
KNTKQ+KGRFRMY E+DG+DH SNHS KR+ +RE +GAGKKD GK+TKKA D
Sbjct: 782 KNTKQAKGRFRMYGEEDGLDHTQSNHSMKRDQPSREAAGAGKKDSGKTTKKAGKFSTSID 841
Query: 833 KGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSL---- 888
KGKTAKEEARE LL EEASIR++V+ +Q+NLSLML LG MAIAN +FAHS+LPS+
Sbjct: 842 KGKTAKEEARESLLKEEASIRDRVREIQKNLSLMLRTLGNMAIANSIFAHSRLPSMVLEC 901
Query: 889 --------------VKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
VKFV+PLL+SPIV D A+E LV LSRCTA PLC+WALDI+TALRL+
Sbjct: 902 FLLIFVDLLPYICDVKFVEPLLRSPIVSDEAFETLVMLSRCTASPLCDWALDISTALRLV 961
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VT+EVH+ DL+PSV E N K S LFERI++GL+ SCKSG LPVDSFTFVFPI+ERI
Sbjct: 962 VTDEVHLLLDLVPSVAEEQVNQKPSHGLFERIIDGLSTSCKSGALPVDSFTFVFPIMERI 1021
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMIS-------VLYHVLGVVPSYQAAIGSA 1046
LL K+T HDDVL+++Y HMD LPLPR+RM+S VLYH L VVP+Y+A+IG A
Sbjct: 1022 LLCSKKTKFHDDVLRLIYLHMDAHLPLPRVRMLSVIFPTLHVLYHALSVVPAYKASIGPA 1081
Query: 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAV 1106
LNEL LG QP+EVASAL+GVY KDVHVRMACLNAVKCIPAVS+RSLP+N EV+TS+WIA+
Sbjct: 1082 LNELSLGFQPDEVASALYGVYAKDVHVRMACLNAVKCIPAVSSRSLPQNTEVATSIWIAL 1141
Query: 1107 HDPEK---------------SVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAA 1151
HDPEK SVAE AEDIWD YG+DFGTD+SG+FKALSH NYNVRLAAA
Sbjct: 1142 HDPEKKLLFLALGEFGWMSTSVAEVAEDIWDHYGFDFGTDFSGIFKALSHVNYNVRLAAA 1201
Query: 1152 EALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK 1211
EALA ALDE+PD IQ SLSTLFSLYIRD+G+G DNVDAGWLGRQG+ALALHSAADVLRTK
Sbjct: 1202 EALAAALDEHPDLIQESLSTLFSLYIRDMGIGNDNVDAGWLGRQGVALALHSAADVLRTK 1261
Query: 1212 DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEE 1271
DLPV+MTFLISRALAD NADVRGRM+N+GI+IIDK+G+DNVSLLFPIFENYLNK A DEE
Sbjct: 1262 DLPVVMTFLISRALADLNADVRGRMINSGILIIDKNGKDNVSLLFPIFENYLNKTAPDEE 1321
Query: 1272 KYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331
+YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE+VQRAVS+CLSPLMQS
Sbjct: 1322 QYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSESVQRAVSACLSPLMQSK 1381
Query: 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391
QDEA TLV+RLLDQ+MKS+KYGERRGAAFGLAGVVKGFG+S LKKY I L+E LA+RN
Sbjct: 1382 QDEADTLVTRLLDQMMKSEKYGERRGAAFGLAGVVKGFGLSCLKKYKIVIILQECLAERN 1441
Query: 1392 SAKRREGALLAFECLCEKLGRLFEP---------YVIQMLPLLLVAFSDQVVAVREAAEC 1442
SAK REGALL FECLCE LG+LFEP YVIQMLPLLLV+FSDQV AVREAAEC
Sbjct: 1442 SAKSREGALLGFECLCETLGKLFEPYVDKFLTHKYVIQMLPLLLVSFSDQVAAVREAAEC 1501
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1502 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1561
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTD+HPKVQSAGQTALQQVGSVIKNPEIA+LVPTLL GL+DPN+HTKYSLDILLQ
Sbjct: 1562 KLTEVLTDSHPKVQSAGQTALQQVGSVIKNPEIAALVPTLLKGLSDPNEHTKYSLDILLQ 1621
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTFVN++DAPSLALLVPIVHRGLR RSA+TKK+A+QIVGNMCSLVTEPKDMIPYIGLLLP
Sbjct: 1622 TTFVNSIDAPSLALLVPIVHRGLRVRSADTKKRASQIVGNMCSLVTEPKDMIPYIGLLLP 1681
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLI GMGE+NFPDLV WL + LKSDNSNVERSGAAQGL
Sbjct: 1682 EVKKVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGL 1741
Query: 1683 SEVL-------------------AALGTVYFEHILP------------------------ 1699
SEVL +G F ++P
Sbjct: 1742 SEVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGLSE 1801
Query: 1700 ---------------DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744
DIIRNCSHQ+ASVRDGYLTLFKYLPRSLGVQFQ YL QVLPAILD
Sbjct: 1802 VLAALGVEFFEHVFPDIIRNCSHQKASVRDGYLTLFKYLPRSLGVQFQKYLPQVLPAILD 1861
Query: 1745 GLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSVELL 1799
GLADENESVRDAALGAGHVLVEHYATT SLPLLLPAVEDGI ND+WRIRQSSVELL
Sbjct: 1862 GLADENESVRDAALGAGHVLVEHYATTYALSLSLPLLLPAVEDGIINDSWRIRQSSVELL 1921
Query: 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
GDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR+KRNE+LAALYMVR+DVSLS
Sbjct: 1922 GDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGREKRNEILAALYMVRADVSLS 1981
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
VRQAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLAS+SSERRQVAGR+LGELV KLGER
Sbjct: 1982 VRQAALHVWKTIVANTPKTLREIMPVLMDTLIASLASASSERRQVAGRSLGELVGKLGER 2041
Query: 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979
VLP IIPILS+GL DP +SRRQGVC GLSEVMASAGKSQL++FM +LIPTIRTALCDS
Sbjct: 2042 VLPLIIPILSQGLSDPDSSRRQGVCSGLSEVMASAGKSQLMTFMTDLIPTIRTALCDSEP 2101
Query: 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039
VRESAGLAFSTL+KSAGMQAIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPH
Sbjct: 2102 AVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALEDDKTSDTALDGLKQILSVRTSAVLPH 2161
Query: 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAE 2099
ILPKLVH PLSAFNAHALGALAEVAGPGL+FHLGT+LP LLSAM D D +VQ+ AK+AAE
Sbjct: 2162 ILPKLVHPPLSAFNAHALGALAEVAGPGLDFHLGTVLPPLLSAMSDVDQEVQTSAKKAAE 2221
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
TV LVIDEEGVE L+SELLKGV D+QA+IRRSS+YLIGYF+KNSKLYLVDEAPNMISTLI
Sbjct: 2222 TVVLVIDEEGVEPLISELLKGVSDSQAAIRRSSSYLIGYFFKNSKLYLVDEAPNMISTLI 2281
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219
VLLSD DS+TV AWEALSRV+ SVPKEV PSYIK++RDA+S+SRDKERRKKKGGP+LIP
Sbjct: 2282 VLLSDPDSSTVTVAWEALSRVIMSVPKEVLPSYIKLVRDAVSSSRDKERRKKKGGPVLIP 2341
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
GFCLPK+LQP+LPIFLQGLISGSAELREQAALGLGELIEV EQSLKE VIPITGPLIRI
Sbjct: 2342 GFCLPKSLQPILPIFLQGLISGSAELREQAALGLGELIEVAGEQSLKEVVIPITGPLIRI 2401
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
IGDRFPWQVKSAILSTL+I+IRKGGI+LKPFLPQLQTTF+KCLQD+TRT+RS AA+ALG
Sbjct: 2402 IGDRFPWQVKSAILSTLTIMIRKGGISLKPFLPQLQTTFVKCLQDNTRTIRSGAAVALGM 2461
Query: 2340 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399
LS L+TRVDPLV DLLSSLQ SD G+REAIL+ALKGVLKHAGK+VSSAV R+YSVLKDL
Sbjct: 2462 LSGLNTRVDPLVSDLLSSLQGSDGGVREAILSALKGVLKHAGKNVSSAVSSRIYSVLKDL 2521
Query: 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRH 2459
++HDDD VRV AASILG+++Q +E Q +L+QE+ +LA+SP+W RHGS+L ++ L
Sbjct: 2522 IHHDDDRVRVYAASILGVLTQYLEAVQFTELIQEVTSLANSPNWPPRHGSILTISSLLYR 2581
Query: 2460 NPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILA 2519
NP+ I S LF +++D L+ +LKDEKFPLRE+STKALGRLLL++ Q P++T + D+L+
Sbjct: 2582 NPAPIFSSSLFQTVVDCLRDALKDEKFPLRESSTKALGRLLLYRAQEDPSDTVLYKDVLS 2641
Query: 2520 SVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
+V++ D+SSEVRRRALSA+K+VAKANPSAIM H + GPALAECLKD +TPVRLAAER
Sbjct: 2642 LLVTSTRDESSEVRRRALSAIKAVAKANPSAIMSHGTVIGPALAECLKDANTPVRLAAER 2701
Query: 2580 CAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPE 2614
CA+HAFQLT+GSE +Q QK+ITGLDARRLSKFPE
Sbjct: 2702 CAIHAFQLTKGSENVQAVQKYITGLDARRLSKFPE 2736
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183637|ref|NP_001185313.1| protein ILITYHIA [Arabidopsis thaliana] gi|332196169|gb|AEE34290.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3882 bits (10067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1914/2598 (73%), Positives = 2225/2598 (85%), Gaps = 63/2598 (2%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 142 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 201
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 202 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 261
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 262 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 321
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 322 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 381
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 382 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 441
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 442 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 501
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 502 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 561
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 562 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 621
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 622 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 681
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 682 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 741
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 742 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 801
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 802 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 861
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 862 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 906
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 907 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 966
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 967 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 1026
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 1027 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 1084
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FP VLYHVLGVVP+YQA++
Sbjct: 1085 TFIFP---------------------------------------VLYHVLGVVPAYQASV 1105
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1106 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1165
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1166 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1225
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1226 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1285
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1286 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1345
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1346 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1405
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1406 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1465
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1466 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1525
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV------LTDTHPKVQS 1517
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEV LTDTHPKVQS
Sbjct: 1526 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVFKTIQVLTDTHPKVQS 1585
Query: 1518 AGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
AGQ ALQQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALL
Sbjct: 1586 AGQLALQQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALL 1645
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
VPIVHRGLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS
Sbjct: 1646 VPIVHRGLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1705
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
VAARA+GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+I
Sbjct: 1706 VAARAVGSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENI 1765
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA 1757
LPD+IR+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAA
Sbjct: 1766 LPDLIRHCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAA 1825
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
LGAGHVLVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG
Sbjct: 1826 LGAGHVLVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1885
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
GSDDEGASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPK
Sbjct: 1886 GSDDEGASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPK 1945
Query: 1878 TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937
TLKEIMP+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP
Sbjct: 1946 TLKEIMPILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDV 2005
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+RQGVCIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG
Sbjct: 2006 DKRQGVCIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAG 2065
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
+QA+DEI+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLSA NAHAL
Sbjct: 2066 LQAMDEIIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHAL 2125
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
GALAEVAG G N HLGTILPALLSAMG ++ +VQ LA+EAAE V LVIDEEGVE+L+SEL
Sbjct: 2126 GALAEVAGAGFNTHLGTILPALLSAMGGENKEVQELAQEAAERVVLVIDEEGVETLLSEL 2185
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177
LKGV D+QASIRRSSAYLIGYF+K+SKLYL+DEAPNMISTLIV+LSDSDSTTVA +WEAL
Sbjct: 2186 LKGVSDSQASIRRSSAYLIGYFFKSSKLYLIDEAPNMISTLIVMLSDSDSTTVAVSWEAL 2245
Query: 2178 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQG 2237
+RV+ SVPKEV PSYIK++RDA+ST+RDKERRK+KGG ++IPG CLPK+L+PLLP+FLQG
Sbjct: 2246 ARVIGSVPKEVLPSYIKLVRDAVSTARDKERRKRKGGYVVIPGLCLPKSLKPLLPVFLQG 2305
Query: 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS 2297
LISGSAELREQAA+GLGELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAIL+TL
Sbjct: 2306 LISGSAELREQAAIGLGELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILATLI 2365
Query: 2298 IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357
I+I++GG+ALKPFLPQLQTTF+KCLQDSTRT+RSSAA+ALGKLSALSTR+DPLVGDL++S
Sbjct: 2366 ILIQRGGMALKPFLPQLQTTFVKCLQDSTRTIRSSAAVALGKLSALSTRIDPLVGDLMTS 2425
Query: 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGI 2417
Q +D+G+REAIL+A++GV+KHAGKS+ AV++R++ +LKDL++H+DD VR+SA S+LG+
Sbjct: 2426 FQAADSGVREAILSAMRGVIKHAGKSIGPAVRVRIFDLLKDLMHHEDDQVRISATSMLGV 2485
Query: 2418 MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRL 2477
+SQ +E QL+ LLQE+ +L++S +W ARHGSVL ++ L+HNPS I S LF S+L+ L
Sbjct: 2486 LSQYLEAAQLSVLLQEVNDLSASQNWGARHGSVLCISSLLKHNPSTIMTSSLFSSMLNSL 2545
Query: 2478 KSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRAL 2537
KSSLKDEKFPLRE+STKALGRLLL Q+ + P+NT VV+D+L+S+VSALHDDSSEVRRRAL
Sbjct: 2546 KSSLKDEKFPLRESSTKALGRLLLKQLATDPSNTKVVIDVLSSIVSALHDDSSEVRRRAL 2605
Query: 2538 SALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGA 2597
S+LK+ AK NPSA M ++++ GP LAECLKDG+TPVRLAAERCA+H FQLT+G+E +Q A
Sbjct: 2606 SSLKAFAKDNPSATMANISVIGPPLAECLKDGNTPVRLAAERCALHVFQLTKGAENVQAA 2665
Query: 2598 QKFITGLDARRLSKFPEH 2615
QK+ITGLDARRLSKFPE
Sbjct: 2666 QKYITGLDARRLSKFPEQ 2683
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2622 | ||||||
| RGD|1593434 | 2672 | Gcn1l1 "GCN1 general control o | 0.584 | 0.573 | 0.409 | 0.0 | |
| UNIPROTKB|Q92616 | 2671 | GCN1L1 "Translational activato | 0.572 | 0.561 | 0.408 | 0.0 | |
| UNIPROTKB|F1MZT7 | 2676 | GCN1L1 "Uncharacterized protei | 0.572 | 0.560 | 0.410 | 0.0 | |
| UNIPROTKB|F1NAK4 | 2672 | GCN1L1 "Uncharacterized protei | 0.569 | 0.558 | 0.405 | 0.0 | |
| FB|FBgn0039959 | 2630 | CG17514 [Drosophila melanogast | 0.572 | 0.570 | 0.401 | 0.0 | |
| DICTYBASE|DDB_G0279487 | 2667 | DDB_G0279487 "GCN1-like protei | 0.674 | 0.663 | 0.363 | 2.9e-302 | |
| UNIPROTKB|F1RJK5 | 1280 | GCN1L1 "Uncharacterized protei | 0.470 | 0.963 | 0.424 | 1.4e-263 | |
| POMBASE|SPAC18G6.05c | 2670 | SPAC18G6.05c "translation elon | 0.535 | 0.526 | 0.372 | 8.4e-263 | |
| UNIPROTKB|G4MR95 | 2678 | MGG_04710 "Translational activ | 0.647 | 0.634 | 0.339 | 4.3e-259 | |
| ASPGD|ASPL0000003073 | 2672 | AN10734 [Emericella nidulans ( | 0.510 | 0.501 | 0.384 | 1e-256 |
| RGD|1593434 Gcn1l1 "GCN1 general control of amino-acid synthesis 1-like 1 (yeast)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2957 (1046.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 646/1579 (40%), Positives = 942/1579 (59%)
Query: 1051 CLGLQPNEVASALHGVYTKDVHVRMACLNAVK----CIPAVSTRSLPENIEVSTSLWIAV 1106
C + EV L + + VR L + +PA T + + LW+
Sbjct: 1077 CAFAEQEEVDVLLAALQSPCASVRETALRGLMELHLVLPAPDTDE-KNGLNLLRRLWVVK 1135
Query: 1107 HDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDEYPDS- 1164
D E+ + + AE +W G D +D S L + + VR Y
Sbjct: 1136 FDKEEEIRKLAERLWTTMGLDLQSDLCSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQA 1195
Query: 1165 --IQGSLSTLFS--LY----IRDIGLG---GDNVDAGWLGRQGIALALHSAADVLRTKDL 1213
+ G L ++ LY + D LG ++ W R G+ALAL+ + L + +
Sbjct: 1196 AEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQWEARCGLALALNKLSQYLDSSQV 1254
Query: 1214 PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKY 1273
+ F + AL D N DVR ML+A + ++ HG++NV+ L P+FE +L K A ++ Y
Sbjct: 1255 KPLFQFFVPDALNDRNPDVRKCMLDAALATLNAHGKENVNSLLPVFEEFL-KDAPNDASY 1313
Query: 1274 DLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 1333
D VR+ VV+ G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+ ++++
Sbjct: 1314 DAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAVKE 1373
Query: 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393
+A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ +
Sbjct: 1374 DAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNF 1433
Query: 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSA 1453
+RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS LSA
Sbjct: 1434 RRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSA 1493
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H
Sbjct: 1494 HGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHV 1553
Query: 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573
KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+ +DAPS
Sbjct: 1554 KVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPS 1613
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633
LAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+P
Sbjct: 1614 LALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVP 1672
Query: 1634 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
EVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG
Sbjct: 1673 EVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEK 1732
Query: 1694 FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL LADENE
Sbjct: 1733 LEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENE 1792
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
VRD AL AG ++ YA T++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +G
Sbjct: 1793 FVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTG 1852
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
K E S+D+ T +AII LG D+RN VLA LYM RSD L VRQA+LHVWK +
Sbjct: 1853 KMTTETASEDDNFGTAQSNKAIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIV 1912
Query: 1872 VANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931
V+NTP+TL+EI+P L L+ ++R +A R LG+LVRKLGE++LP IIPIL G
Sbjct: 1913 VSNTPRTLREILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEG 1972
Query: 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991
L+ + RQGVCIGLSE+M S + +L F + L+PT R ALCD + EVRE+A F
Sbjct: 1973 LRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQ 2032
Query: 1992 LFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 2051
L + G QA+++I+P LL L+D++ S+ ALDGLKQ+++V++ VLP+++PKL P+
Sbjct: 2033 LHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQVMAVKSRVVLPYLVPKLTTPPV-- 2090
Query: 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXX 2109
N L L+ VAG L HLG ILPA++ A+ + + L + V L + D
Sbjct: 2091 -NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTG 2149
Query: 2110 XXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT 2169
+ + +R+++A ++ + SK +++S LI L +DS
Sbjct: 2150 HRIIIEDLLEATRSPEVGMRQAAAIILNMYCSRSKADYTSHLRSLVSGLIRLFNDSSPVV 2209
Query: 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQ 2228
+ +W+AL+ + + Q + I+ I ++ R + +PGFCLPK +
Sbjct: 2210 LGESWDALNAITKKLDAGNQLALIEEFHKEIRYIGNECRGEH------VPGFCLPKKGVT 2263
Query: 2229 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 2288
+LP+ +G+++GS E +E+AA LG +I +TS +L+ V+ ITGPLIRI+GDRF W V
Sbjct: 2264 SILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADALRPSVVSITGPLIRILGDRFSWSV 2323
Query: 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVD 2348
K+A+L TLS+++ K GIALKPFLPQLQTTF K LQDS R VR +VD
Sbjct: 2324 KAALLETLSLLLGKVGIALKPFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIHIKVD 2383
Query: 2349 PLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHV 2407
PL +LL+ ++V D GIR+ +L AL+ V++ AG V +A++ + S+L ++ HD+D+
Sbjct: 2384 PLFTELLNGIRVVEDPGIRDTMLQALRFVIQGAGAKVDAAIRKNIVSLLLGMLGHDEDNT 2443
Query: 2408 RVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHNPSAISM 2466
R+S+A LG + + W RHG L + + PS +
Sbjct: 2444 RISSAGCLGELCAFLTEEELNTVLQQCLLADVSGIDWMVRHGRSLALSVAVNVAPSRLCT 2503
Query: 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526
+ D + S+ ++ P+ + + +G L+ + I++G + L ++ L
Sbjct: 2504 GKYSNEVQDMVLSNAVADRIPIAVSGIRGMGFLMKYHIETGGGQLPPRLSTL--LIKCLQ 2561
Query: 2527 DDSSEVRRRALSALKSVAKAN--PSAIMVHVAL--FGPALAECLKDGSTPVRLAAERCAV 2582
+ SS++R L A K + AN P + A+ AL + KD +T VR +E+ V
Sbjct: 2562 NPSSDIR---LVAEKMIWWANKEPRPALEPQAIKPILKALLDNTKDKNTVVRAYSEQAIV 2618
Query: 2583 HAFQLTRGSEYIQGAQKFI 2601
+ +L +G E +Q K +
Sbjct: 2619 NLLKLRQGEELLQSLSKIL 2637
|
|
| UNIPROTKB|Q92616 GCN1L1 "Translational activator GCN1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2939 (1039.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 630/1542 (40%), Positives = 926/1542 (60%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1113 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDLCSLLIDDVIYH 1171
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1172 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1230
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D + DVR ML+A + ++ HG++
Sbjct: 1231 WEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAALATLNTHGKE 1290
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L+
Sbjct: 1291 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALS 1349
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1350 TPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1409
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1410 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1469
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1470 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1529
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+
Sbjct: 1530 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPS 1589
Query: 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+
Sbjct: 1590 RKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQ 1648
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L +
Sbjct: 1649 KDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQ 1708
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLG 1728
S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP + G
Sbjct: 1709 SSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFG 1768
Query: 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDN 1788
+F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F+D
Sbjct: 1769 DKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDL 1828
Query: 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848
WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG ++RN VLA
Sbjct: 1829 WRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVERRNRVLAG 1888
Query: 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRA 1908
LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A R
Sbjct: 1889 LYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIAART 1948
Query: 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968
LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S + +L F + L+P
Sbjct: 1949 LGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVP 2008
Query: 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028
T R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGLKQ+
Sbjct: 2009 TARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQV 2068
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-D 2087
+++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2069 MAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLG 2125
Query: 2088 MDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146
+ L + V L + D + + +R+++A ++ + SK
Sbjct: 2126 TPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIILNIYCSRSKAD 2185
Query: 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
+++S LI L +DS + +W+AL+ + + Q + I+ + I ++
Sbjct: 2186 YTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRLIGNE 2245
Query: 2207 ERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL 2265
+ + +PGFCLPK + +LP+ +G+++GS E +E+AA LG +I +TS +L
Sbjct: 2246 SKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADAL 2299
Query: 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS 2325
+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQTTF K LQDS
Sbjct: 2300 RPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKALQDS 2359
Query: 2326 TRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQ-VSDAGIREAILTALKGVLKHAGKSV 2384
R VR +VDPL +LL+ ++ + D G+R+ +L AL+ V++ AG V
Sbjct: 2360 NRGVRLKAADALGKLISIHIKVDPLFTELLNGIRAMEDPGVRDTMLQALRFVIQGAGAKV 2419
Query: 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SW 2443
+ ++ + S+L ++ HD+D+ R+S+A LG + + W
Sbjct: 2420 DAVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSAVLQQCLLADVSGIDW 2479
Query: 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503
RHG L + + P + + + + SS ++ P+ + + +G L+ H
Sbjct: 2480 MVRHGRSLALSVAVNVAPGRLCAGRYSSDVQEMILSSATADRIPIAVSGVRGMGFLMRHH 2539
Query: 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM-VHVALFGP-- 2560
I++G + L V L + SS++R L A K + AN + + P
Sbjct: 2540 IETGGGQLPAKLSSL--FVKCLQNPSSDIR---LVAEKMIWWANKDPLPPLDPQAIKPIL 2594
Query: 2561 -ALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601
AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 2595 KALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLSKIL 2636
|
|
| UNIPROTKB|F1MZT7 GCN1L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2936 (1038.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 634/1545 (41%), Positives = 926/1545 (59%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1115 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSTMGLDLQPDLCSLLIDDVIYH 1173
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1174 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1232
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D N DVR ML+A + ++ HG++
Sbjct: 1233 WEARCGLALALNKLSQCLDSSQVKPLFQFFVPDALNDRNPDVRKCMLDAALATLNTHGKE 1292
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L
Sbjct: 1293 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALA 1351
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V++CL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1352 TPSQQVQESVANCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1411
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1412 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1471
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1472 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1531
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLT 1547
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI A++ P LL LT
Sbjct: 1532 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILGHAAIAPVLLDALT 1591
Query: 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607
DP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL
Sbjct: 1592 DPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL- 1650
Query: 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK 1667
T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L
Sbjct: 1651 TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLT 1710
Query: 1668 SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPR 1725
+ S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP
Sbjct: 1711 YEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPI 1770
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785
+ G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F
Sbjct: 1771 TFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLF 1830
Query: 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1845
+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG D+RN V
Sbjct: 1831 DDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVDRRNRV 1890
Query: 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVA 1905
LA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A
Sbjct: 1891 LAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIA 1950
Query: 1906 GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965
R LG+LVRKLGE++LP IIPIL GL+ P + RQGVCIGLSE+M S + +L F +
Sbjct: 1951 ARTLGDLVRKLGEKILPEIIPILEEGLRSPKSDERQGVCIGLSEIMKSTSRDAVLYFSES 2010
Query: 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGL 2025
L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGL
Sbjct: 2011 LVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGL 2070
Query: 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085
KQ++++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2071 KQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKE 2127
Query: 2086 D-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNS 2143
+ L + V L + D + + +R+++A ++ + S
Sbjct: 2128 KLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMRQAAAIILNIYCSRS 2187
Query: 2144 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203
K +++S LI L +DS + +W+AL+ + + Q + I+ + I
Sbjct: 2188 KADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRFI 2247
Query: 2204 RDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
++ R + +PGFCLPK + +LP+ +G+++GS E +E+AA LG +I +TS
Sbjct: 2248 GNESRGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSA 2301
Query: 2263 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322
+L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQTTF K L
Sbjct: 2302 DALRPSVVNITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKAL 2361
Query: 2323 QDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAG 2381
QDS R VR +VDPL +LL+ ++V D G+R+ +L AL+ V++ AG
Sbjct: 2362 QDSNRGVRLKAADALGKLISIHIKVDPLFMELLNGIRVMEDPGVRDTMLQALRFVIQGAG 2421
Query: 2382 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP 2441
V ++ + S+L ++ HD+D+ R+S+A LG + +
Sbjct: 2422 AKVDVVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSTVLQQYLLADVSG 2481
Query: 2442 -SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 2500
W RHG L + + P + + + D + S+ + P+ + + +G L+
Sbjct: 2482 IDWMVRHGRSLALSVAVSVAPGRLCVGKYGSDVQDMILSNALTFQIPIAVSGVRGMGFLM 2541
Query: 2501 LHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI-MVHVALFG 2559
H I++G + L + L + SS++R L A K + AN + +
Sbjct: 2542 KHHIETGGGQLPAKLSSL--FIKCLQNPSSDIR---LVAEKMIWWANKDPLPALDPQAIK 2596
Query: 2560 P---ALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601
P AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 2597 PILKALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLCKIL 2641
|
|
| UNIPROTKB|F1NAK4 GCN1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2881 (1019.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 623/1538 (40%), Positives = 926/1538 (60%)
Query: 1102 LWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDE 1160
LW+ D E + + AE +W+ G + D S L K + + VR +
Sbjct: 1130 LWVVKFDVEDEIQKLAERLWESMGLELQPDLCSLLIKDVIYHEEAVRQAGAEALSKAVAQ 1189
Query: 1161 YPDSIQGSLSTLFSLYIRDI--------GLG---GDNVDAGWLGRQGIALALHSAADVLR 1209
Y ++ L +Y + LG ++ W R GIALAL+ ++ L
Sbjct: 1190 YQHQAAEVMNKLTEIYQEKLYRPPPVLDALGRVISESPPDQWEARCGIALALNKLSEHLD 1249
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ + + F + AL D N +VR ML+A + ++ HG+DNV+ L P+FE +L K A +
Sbjct: 1250 SSQVKPLFQFFVPDALNDRNPEVRKCMLDAALSTLNTHGKDNVNSLLPVFEEFL-KNAPN 1308
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ YD VR+ VVI G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+
Sbjct: 1309 DASYDAVRQSVVILMGSLAKHLDKSDPKVKPIVGKLIAALSTPSQQVQESVASCLPPLVP 1368
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
+++++A ++ +L+ L++SDKY ER+GAA+GLAG+VKG GI SLK+ + TL + + D
Sbjct: 1369 AIKEDAGGMIQKLMQLLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMTTLTDAIQD 1428
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMS 1449
+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS
Sbjct: 1429 KKNFRRREGALFAFEMLCSMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMS 1488
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQS--SVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507
LS GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEV
Sbjct: 1489 NLSTHGVKLVLPSLLAALEEESWRTKAGTGSVELLGAMAYCAPKQLSSCLPNIVPKLTEV 1548
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567
LTD+H KVQ+AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+
Sbjct: 1549 LTDSHVKVQNAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVH 1608
Query: 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627
+DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K
Sbjct: 1609 FIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKAS 1667
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687
L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A
Sbjct: 1668 LLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMA 1727
Query: 1688 ALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LG E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL
Sbjct: 1728 GLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFIPYVGPIIPCILKA 1787
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENE VRD AL AG ++ YA T++ LLLP +EDG+F+D WRIR SSV+LLGDLLF
Sbjct: 1788 LADENEFVRDTALRAGQRIISMYAETAIALLLPQLEDGLFDDLWRIRFSSVQLLGDLLFH 1847
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
++G +GK E S+D+ T +AII LG ++RN VLA LYM RSD L VRQA+L
Sbjct: 1848 ISGVTGKMTTETASEDDNFGTAQSNKAIINALGVERRNRVLAGLYMGRSDTQLVVRQASL 1907
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSII 1925
HVWK +V+NTP+TL+EI+P L L+ ++R VA R LG+LVRKLGE++LP II
Sbjct: 1908 HVWKIVVSNTPRTLREILPTLFGLLLKFLASTCADKRTVAARTLGDLVRKLGEKILPEII 1967
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL GL+ RQGVCIGLSE+M S + +L F + L+PT+R ALCD + EVRE+A
Sbjct: 1968 PILEDGLRSDKNDERQGVCIGLSEIMKSTSRDAVLVFSESLVPTVRKALCDPLEEVREAA 2027
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045
F L + G QA+++I+P LL L++++TSD A+DGLKQ+++V++ VLP+++PKL
Sbjct: 2028 AKTFEQLHSTIGHQALEDILPFLLKQLDNEETSDFAVDGLKQVMAVKSRVVLPYLVPKLT 2087
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLV 2104
P+ N L L+ VAG L HL ILPA++SA+ + + L ++V L
Sbjct: 2088 TPPV---NTRVLAFLSSVAGDALTRHLSVILPAMMSALKEKLGTSEEQLEMANCQSVILS 2144
Query: 2105 I-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 2163
+ D + +R+++A ++ + +K N++S LI L +
Sbjct: 2145 VEDDVGQRIITEDLLEATRSPDVGMRQAAAIILNIYCSKTKADYTGHLKNLVSGLIRLFN 2204
Query: 2164 DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223
D++ + +W+AL+ + + Q + I+ + I ++ + + +PGFC+
Sbjct: 2205 DTNPVVLNESWDALNSITKKLDAGNQLALIEDLHKDIRVVGNEAKGEH------VPGFCI 2258
Query: 2224 PK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
PK + +L + +G+++G+ E +E+AA LG +I++TS ++LK V+ ITGPLIRI+GD
Sbjct: 2259 PKKGVTSILLVLREGVLTGNPEQKEEAAKALGLVIKLTSAEALKPSVVSITGPLIRILGD 2318
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXX 2342
RF W VK A+L TLS+++ K IALKPFLPQLQTTF K LQDS R VR
Sbjct: 2319 RFSWNVKVALLETLSLLLAKVEIALKPFLPQLQTTFTKALQDSNRAVRLKAADALGKLIV 2378
Query: 2343 XXTRVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
+VDPL +LL+ ++ SD + IR+ +L AL+ V + AG V + ++ + +VL ++
Sbjct: 2379 IHVKVDPLFTELLNGIRSSDDSAIRDTMLQALRFVTRGAGAKVDATIRKNISTVLLGMLG 2438
Query: 2402 HDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHN 2460
HD+D R+++A L + + W RHG L + +
Sbjct: 2439 HDEDATRMASAGCLAELCAFLSEEELNTVLHQHLLADISGIDWMVRHGRSLALSVAVNVA 2498
Query: 2461 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILAS 2520
P + + S+L+ + S+ ++ P+ + + +G L+ + ++ G N + L
Sbjct: 2499 PYRLCSPKYYNSVLEMILSNATADRIPIAVSGIRGMGFLMKYHMEEG-GNLPPKLSNL-- 2555
Query: 2521 VVSALHDDSSEVRRRALSALKSVAKANPSAI-MVHVALFGP---ALAECLKDGSTPVRLA 2576
+ L + SS+++ L A K + AN + + + P AL + KD +T VR
Sbjct: 2556 FIKCLQNSSSDIK---LVAEKMIWWANKNHLPALDPQTIKPILKALLDNTKDKNTSVRAY 2612
Query: 2577 AERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPE 2614
+++ V+ ++ G + ++ K LDA L E
Sbjct: 2613 SDQAIVNLLKMRVGEQVLESVSKI---LDAASLELLNE 2647
|
|
| FB|FBgn0039959 CG17514 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2827 (1000.2 bits), Expect = 0., Sum P(4) = 0.
Identities = 617/1538 (40%), Positives = 911/1538 (59%)
Query: 1073 VRMACLNAVKCIP--AVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAEDIWDRYGYDF 1128
VR L ++K + V+ + ++E + W+A HDPE+ E A +W+ +
Sbjct: 1058 VRKVALQSLKIMVNGIVNHIKVDNSLEKVIINRFWVAKHDPEEENRELALFLWNTAKFPL 1117
Query: 1129 GTDYSGLFKALSHSNYNVRXXXXXXXX--XXXDEYPDSIQGSLSTLFSLYIRDIGLGG-- 1184
Y + ++HS ++ DE + LFS+Y + L
Sbjct: 1118 -PGYVDIINDITHSETCIQKSASESLIPLLAGDEVLKKCV--IKKLFSIYKAKLSLLPPV 1174
Query: 1185 -DNVDAG-------WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRM 1236
D D W R+GIA+A + A +L +D+ IM F++S+ L D V M
Sbjct: 1175 LDQFDREIEPAIDQWKPRRGIAIAFSTIAFLLSIEDINDIMNFMVSQGLGDREDVVHKEM 1234
Query: 1237 LNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP 1296
L + I+D HG + L P+FE++L+K A + YD +R+ VVI G+LA+HL KDD
Sbjct: 1235 LATALKIVDLHGNKAIENLLPVFEDFLDK-APKSQSYDNIRQAVVILMGSLARHLEKDDK 1293
Query: 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERR 1356
++ +V +L+ L+TPS+ VQ AVS+CL LM S++DEAP+++ +LL L KS+KYGERR
Sbjct: 1294 RIDPIVKRLITSLSTPSQQVQEAVSNCLPHLMPSVKDEAPSMIKKLLHSLAKSEKYGERR 1353
Query: 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416
GAA+G+AG+VKG GI SLK+ I + L + D+ + + REGAL AFE LC LGRLFEP
Sbjct: 1354 GAAYGIAGIVKGLGILSLKQLDIMSKLTAFIQDKKNYRSREGALFAFEVLCSTLGRLFEP 1413
Query: 1417 YVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
Y++ +LP LL F D +M +LSA GVKLVLPSLL+ L++ +WRTK
Sbjct: 1414 YIVHVLPHLLQCFGDPSQYVRQAADDTAKVVMRKLSAHGVKLVLPSLLEALDEDSWRTKT 1473
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536
+SV+LLGAMA+CAP+QLS CLP IVPKL +VL D+H KVQ +G AL+ +GSVIKNPEI
Sbjct: 1474 ASVELLGAMAFCAPKQLSSCLPSIVPKLIQVLGDSHTKVQESGGEALKVIGSVIKNPEIQ 1533
Query: 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
++VP LL L DP+++T L LL+T F++ +DAPSLAL++P+V R +RS ET+K A
Sbjct: 1534 AIVPVLLDALEDPSNNTSTCLQSLLKTKFIHFIDAPSLALIMPVVQRAFMDRSTETRKMA 1593
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
AQI+GNM SL T+ KD+ PY+ ++P +K L+DP+PEVR+V+ARA+G++++GMGE +F
Sbjct: 1594 AQIIGNMYSL-TDQKDLAPYLPSIIPGLKSSLLDPVPEVRAVSARALGAMVKGMGESSFE 1652
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRD 1714
+L+ WL++ L S++S+V+RSGAAQGLSEV+ LG ++P+II A V+D
Sbjct: 1653 NLLPWLMETLTSESSSVDRSGAAQGLSEVVGGLGVEKMHKLMPEIISTAERVDIAAHVKD 1712
Query: 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774
GY+ +F Y+P + +F Y+ Q++ IL LADE+E VRD AL AG +V YA T++
Sbjct: 1713 GYIMMFIYMPGAFQEEFTPYIGQIINPILKALADESEFVRDTALKAGQRIVNLYAETAVA 1772
Query: 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834
LLLP +E G+F+DNWRIR SSV+LLGDLL++++G SGK E S+D+ TE AII
Sbjct: 1773 LLLPELEKGLFDDNWRIRYSSVQLLGDLLYRISGVSGKMTTETASEDDNFGTEHSHTAII 1832
Query: 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXX 1894
LG ++RN VL+ LYM RSDVSL VRQAALHVWK +V NTP+TL+EI+P L L+
Sbjct: 1833 HFLGDERRNRVLSGLYMGRSDVSLMVRQAALHVWKVVVTNTPRTLREILPTLFGLLLGCL 1892
Query: 1895 XXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954
++RQVA R LG+LVRKLGERVLP IIPIL GL +RQGVCIGLSE+M S
Sbjct: 1893 ASTSYDKRQVAARTLGDLVRKLGERVLPEIIPILENGLNSDHPDQRQGVCIGLSEIMGST 1952
Query: 1955 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014
K +L+F+D L+PT+R ALCD + EVRE+A F +L + G +A+DEI+P +L L D
Sbjct: 1953 SKEMVLTFIDSLVPTVRKALCDPLPEVREAAAKTFESLHSTVGSRALDEILPFMLQGLSD 2012
Query: 2015 DQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL 2072
++ LDGL+Q++S+++ VLP+++P+L P+ N AL L VAG L +L
Sbjct: 2013 ADPFVAENTLDGLRQVMSIKSKVVLPYLVPQLTSPPV---NTKALSILVSVAGEALIKYL 2069
Query: 2073 GTILPALLSAMGDD-DMDVQSLAKEAAETVTL-VIDXXXXXXXXXXXXKGVGDNQASIRR 2130
IL +LL A+ D + E +TV L V D + R+
Sbjct: 2070 PKILSSLLEALSDAYGYPNEPQENEYCQTVILSVTDETGIRTIMDTLLISANSSDLCTRK 2129
Query: 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQP 2190
S+A L+ F +S + P ++ L+ LL +SD + +WEAL+ V+ + Q
Sbjct: 2130 SAASLLSAFCIHSPGNYYEYIPQLLRCLLKLLVESDKDILQKSWEALNAVIKGMNAAQQI 2189
Query: 2191 SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAA 2250
++ +R A+ + + + +PGFCLPK + PLLP+F + +++G E +E AA
Sbjct: 2190 CHVSDVRQAVRFAASELEGTE------LPGFCLPKGITPLLPVFREAILNGLPEEKENAA 2243
Query: 2251 LGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310
GLGE+I +T+ +SL+ V+ ITGPLIRI+GDRF VK+A+L TLSI++ K G+ LK F
Sbjct: 2244 QGLGEVIFLTNAKSLQPSVVHITGPLIRILGDRFNAAVKAAVLETLSILLHKVGVMLKQF 2303
Query: 2311 LPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSD-AGIREAI 2369
LPQLQTTF+K L D R VR +R +PL ++ + ++ SD + +RE +
Sbjct: 2304 LPQLQTTFLKALHDQNRNVRMKAGKALSELVAIHSRAEPLFNEIHNGIKNSDDSSVRETM 2363
Query: 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXX 2429
L AL+ ++ +G +S +K ++Y L ++ H +D R + LG + + +
Sbjct: 2364 LHALRSIVSRSGDKMSEPIKKQIYVTLLSMIGHHEDATRSAVGGCLGAILKYIASGHVYD 2423
Query: 2430 XXXXXXXXXXXPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLR 2489
+HG +V L+ P+ + + L I + ++ EK P+
Sbjct: 2424 LFNNIILTNNTDDLIVKHGHTIVLFVALKECPTEVLVLDLPEKITSYVLINILSEKVPIA 2483
Query: 2490 EASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 2549
+ +A LL + + + +V L+ ++ +D ++ ++ + L AN S
Sbjct: 2484 SNAVRAATYLLDYYLVNQNEPPIKIVMALSRAMNHSSNDVKQLVAQSCTYLSKNLAANQS 2543
Query: 2550 AIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
+I V L P L K+ + V+ +E + +L
Sbjct: 2544 SIDVLKYLV-PMLVNGTKEKNGYVKSNSELALISILRL 2580
|
|
| DICTYBASE|DDB_G0279487 DDB_G0279487 "GCN1-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 2792 (987.9 bits), Expect = 2.9e-302, Sum P(3) = 2.9e-302
Identities = 663/1824 (36%), Positives = 1008/1824 (55%)
Query: 793 EEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTXXXXXXXXXXXXXXS- 851
E+Q+ + ++ K ++A + +K I + KK G+ +
Sbjct: 833 EKQEQLVESRNDRKVKPKTAEEQRDEESRKRI-EEKKKIQSGELEKQEKERQKQLAAQAV 891
Query: 852 IREKVQGVQRNLSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEAL 909
IR+ VQ V L L + MA +NP F + ++ + L++ I +
Sbjct: 892 IRKDVQDVIDRLHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVF 951
Query: 910 VKLSRCTAMPLCNWALDIATALRLI-VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNG 968
KL C +P + LD + A I + ++ P++ E + L ++I+
Sbjct: 952 EKLICC--VP-SRFKLDRSFARHYIYIINNIYYR----PTLSEI----QILGFIQKILTH 1000
Query: 969 LTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDXXXXXXXXXMISV 1028
+ S L +F + +PII+ L + + + ++++ KH MIS
Sbjct: 1001 IRESIAKEALSGFAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISS 1060
Query: 1029 LYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVS 1088
L V+ +A + + +L G++ +++ + G+ +K V VR CL A++ IP++
Sbjct: 1061 LIIVVSTNSRLEAQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIY 1120
Query: 1089 TRSLPENIEVSTSLWIAVHDPEKSVAEA-AEDIWDRYGYDFGTDYSGLF-KALSHSNYNV 1146
+ S + SLW A D + A AE IW + T F K LS S +NV
Sbjct: 1121 SPSFVWEDKYIGSLWFARFDNHDANTSALAEKIW--LATNQPTQLPEDFMKLLSDSTFNV 1178
Query: 1147 RXXXXXXXXXXXDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
E + I + LF +Y ++ R +A AL
Sbjct: 1179 NSETRKINALAIKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALS 1238
Query: 1203 SAAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
+ ++ + L + T +I R L D +V ++ G+ II++ G L FE
Sbjct: 1239 GLGNAIVEPEVLKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEA 1298
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
+L + + + D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S
Sbjct: 1299 FLARPDNGTGEEDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGIS 1358
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380
C++ L+ S + + L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I
Sbjct: 1359 KCIAQLIPSFKKQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSIL 1418
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXX 1440
TL+ + D+ R+GAL AFECLC +GR+FEPY+I +LP LLV F D
Sbjct: 1419 DTLQSYIEDKKHPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDAT 1478
Query: 1441 XXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+MSQLS GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP I
Sbjct: 1479 ADTAKAIMSQLSGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTI 1538
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 1560
VPKLT VL DTH KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ L
Sbjct: 1539 VPKLTYVLNDTHTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENL 1598
Query: 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620
L T +V+T+D SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L
Sbjct: 1599 LSTNYVHTIDPASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNIL 1657
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+P +K VL+DPIPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQ
Sbjct: 1658 MPVMKTVLLDPIPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQ 1717
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
GLSEVLA+L F ++ +++ + R VR+G L++F + P SLG F YL +VLP
Sbjct: 1718 GLSEVLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLP 1777
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+L GLAD+++ VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L G
Sbjct: 1778 QVLKGLADDSDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFG 1837
Query: 1801 DLLFKVAGTSGKALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
DLLFK+AGT+ + + S DD+ + G I ++LG+++ +L++LYM+R D
Sbjct: 1838 DLLFKLAGTTAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFD 1897
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRK 1915
+ SVRQ L +WK IV+NTPKTL+EI+P L+ +I E+RQ++ + LG++V K
Sbjct: 1898 NNSSVRQKVLLIWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSK 1957
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
L +R+LP I+PIL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALC
Sbjct: 1958 LSDRILPEILPILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALC 2016
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTA---LDGLKQILSVR 2032
D +++VRE+A AF L+ + G +A +EI+P L+ L++ D A LDGL+Q++ VR
Sbjct: 2017 DPLIDVREAAAKAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVR 2076
Query: 2033 TTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD-MDVQ 2091
++ VLP ++PKL+ P+S N AL +LA AG GL HL TI+P+L+ + + + +
Sbjct: 2077 SSIVLPVLIPKLLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNA 2136
Query: 2092 SLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151
KEAA ++ ID + +IR + LIG FY + + V E
Sbjct: 2137 KEIKEAAVSICKSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNTM--VTEY 2194
Query: 2152 PN-MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210
P ++ +L+ L +D D+ AA AL + S+ K+ +Y+ V + I ++ +
Sbjct: 2195 PEELLLSLLSLFNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEE 2253
Query: 2211 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI 2270
IPGFCLPK L +LP+ + GL+ G+++ REQA L +I TS +LK FV+
Sbjct: 2254 VS----TIPGFCLPKGLASVLPVLISGLMYGTSDQREQATNTLRTVINHTSADALKPFVM 2309
Query: 2271 PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVR 2330
ITGPLI +IGD+FPWQVKSAIL TLS++I K ++K FL QLQ TFIKCL DS + VR
Sbjct: 2310 QITGPLILVIGDKFPWQVKSAILQTLSLLISKSPASMKIFLHQLQPTFIKCLSDSHKNVR 2369
Query: 2331 XXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390
+ VD LV L++ + +D+ +E+ L AL+ + + K V A
Sbjct: 2370 TNAASALGLLMTLSSSVDQLVNSLITGISTADSISQESKLRALQSIFEKKPK-VEQATLD 2428
Query: 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXPSWAARHGSV 2450
+ + + D +Y D +R A +G S+C S +R+G
Sbjct: 2429 KAIATIVDFLYQPSDDLRSMVAQTIGASSKCFTSLTELNQFIKTNLISPSQSVLSRYGKS 2488
Query: 2451 LVFATFLRHNPSAI--SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508
L + + + S SP +I+ +++ +DEK P+RE+S +L+ + P
Sbjct: 2489 LALGEIFKASGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV----ASP 2544
Query: 2509 ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA-LFGPALAECLK 2567
T D++ S+ + D SS V AL+ +K K+N ++ + P + +
Sbjct: 2545 L--TYAKDLVPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRLKE 2602
Query: 2568 DGSTPVRLAAERCAVHAFQLTRGS 2591
+ P++LAAER VH+ Q+ + S
Sbjct: 2603 RTNLPLKLAAERTLVHSLQIFKES 2626
|
|
| UNIPROTKB|F1RJK5 GCN1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2536 (897.8 bits), Expect = 1.4e-263, P = 1.4e-263
Identities = 535/1259 (42%), Positives = 775/1259 (61%)
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+L
Sbjct: 2 ERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKL 61
Query: 1414 FEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYV+ +LP LL+ F D +MS LSA GVKLVLPSLL LE+++WR
Sbjct: 62 FEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWR 121
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NP
Sbjct: 122 TKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNP 181
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI ++ P LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+
Sbjct: 182 EILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTR 241
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE
Sbjct: 242 KMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGES 300
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS-- 1711
F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S +
Sbjct: 301 CFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPH 360
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VRDGY+ +F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T
Sbjct: 361 VRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAET 420
Query: 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831
++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +
Sbjct: 421 AIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNK 480
Query: 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891
AII LG D+RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+
Sbjct: 481 AIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLL 540
Query: 1892 XXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951
++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M
Sbjct: 541 GFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIM 600
Query: 1952 ASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011
S + +L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL
Sbjct: 601 KSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQ 660
Query: 2012 LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFH 2071
L+D++ S+ ALDGLKQ++++++ VLP+++PKL P+ N L L+ VAG L H
Sbjct: 661 LDDEEVSEFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRH 717
Query: 2072 LGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIR 2129
LG ILPA++ A+ + + L + V L + D + + +R
Sbjct: 718 LGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMR 777
Query: 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ 2189
+++A ++ + SK +++S LI L +DS + +W+AL+ + + Q
Sbjct: 778 QAAAIILNIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQ 837
Query: 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQ 2248
+ I+ + I ++ + + +PGFCLPK + +LP+ +G+++GS E +E+
Sbjct: 838 LALIEELHKEIRLIGNESKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEE 891
Query: 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308
AA LG +I +TS +L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALK
Sbjct: 892 AAKALGLVIRLTSADALRPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALK 951
Query: 2309 PFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQV-SDAGIRE 2367
PFLPQLQTTF K LQDS R VR +VDPL +LL+ ++V D G+R+
Sbjct: 952 PFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIHIKVDPLFTELLNGIRVMEDPGVRD 1011
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXX 2427
+L AL+ V++ AG V ++ + S+L ++ HD+D+ R+S+A LG + +
Sbjct: 1012 TMLQALRFVIQGAGAKVDVVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEEL 1071
Query: 2428 XXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF 2486
W RHG L + + PS + + D + S+ +
Sbjct: 1072 SAVLQQCLLADVSGIDWMVRHGRSLALSVAVNVAPSRLCTGKYSSEVQDMILSNAFALQI 1131
Query: 2487 PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKA 2546
P+ + + +G L+ + +++G + L + L + SS++R L A K + A
Sbjct: 1132 PIAVSGVRGMGFLMKYHVETGGGQLPAKLSSL--FIKCLQNPSSDIR---LVAEKMIWWA 1186
Query: 2547 NPSAI-MVHVALFGP---ALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601
N + + P AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 1187 NKDPLPALDPQAIKPILKALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLCKIL 1245
|
|
| POMBASE|SPAC18G6.05c SPAC18G6.05c "translation elongation regulator Gcn1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 2385 (844.6 bits), Expect = 8.4e-263, Sum P(4) = 8.4e-263
Identities = 537/1442 (37%), Positives = 855/1442 (59%)
Query: 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALAD-----TNAD--VRGRMLNAG 1240
D G + R+ +A++ + L + L + FL++ + A+ T+A V +ML AG
Sbjct: 1204 DLGRIARESVAVSFFHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSKMLEAG 1263
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ I + G V L +FE LN + + D +RE V+ G +A+HL +DP++
Sbjct: 1264 KLAIFQSGAHQVEALMELFEQKLNVDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAV 1323
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
V+D LL VL+TPSE+VQ AV+ CL PL++ ++ L ++LM S +++GAA+
Sbjct: 1324 VMDSLLSVLSTPSESVQLAVAVCLPPLVKKSLGKSKEYYELLSNKLMNSTSLADQKGAAY 1383
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG+GI + + + I +L E +++R +A R+ AL A E LG FEPY+
Sbjct: 1384 GLAGLVKGYGIKAFQDFNILDSLSELISNRQNATHRQVALFAVEAFSRILGIYFEPYLPD 1443
Query: 1421 MLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LPLLL +F D +MSQLSA GVKL+LP+LL GL + WR+K++SV+
Sbjct: 1444 LLPLLLTSFGDNANEVREATMDAVKQIMSQLSAFGVKLLLPTLLDGLNEYNWRSKKASVE 1503
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
+LG M+Y AP+QLS LP I+PKL+EVLTD+H +V++ +L + G VI NPEI +LVP
Sbjct: 1504 ILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGDVISNPEIQTLVP 1563
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
TLL L+D +T +L+ LL+T+FV+ +D PSLAL++PI+ GLRER+A TK+++A+I
Sbjct: 1564 TLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIPILKYGLRERNAGTKRQSAKIF 1623
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
G M SL TEP+++ Y+ L+P +++VL+DP+P+ R+ AA+A+GSLI +GE+ FP L+
Sbjct: 1624 GLMASL-TEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSLIEKLGEKKFPTLIP 1682
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720
L + L+S+ S V+R GAAQGLSE+LA LG E +LP+I++N S +R+ +++L
Sbjct: 1683 ELFNVLRSECSEVDRQGAAQGLSEILAGLGLARLEDVLPEILKNTSSPVPHIRESFISLL 1742
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAV 1780
YLP + G +FQ YL + +P IL GLAD++E V+ A+L A ++V +YAT S+ LLLP +
Sbjct: 1743 IYLPATFGSRFQPYLARAIPPILSGLADDSELVQTASLRAAKMIVNNYATKSVDLLLPEL 1802
Query: 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1840
E G+F++ WRIR SSV+L+GDL+FK+AG + KAL E ++EG ++ +A+++++G++
Sbjct: 1803 EKGLFDNAWRIRLSSVQLVGDLVFKLAGINRKALQED-EEEEGTHSDVSRKALLDIIGQE 1861
Query: 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXE 1900
+ + +L+ LY+VR D++ VR A+ +WK IV NTP+T++EI+P L + ++ +
Sbjct: 1862 RHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVSNLNSSSND 1921
Query: 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
RR + ++LG+L++K G VLP ++P+L +GL+ ++ R GVCI L E++ SA QL
Sbjct: 1922 RRTMCVKSLGDLLKKAGFDVLPQLLPVLKQGLESANSGDRIGVCIALEELINSATPEQLE 1981
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
+ D+ + +R AL D LEVRE+A AF +L G +A+D+++P LL LE + S+
Sbjct: 1982 IYSDDFVYAVRRALMDGDLEVRETAAEAFDSLQSILGDRAVDDVLPQLLKLLESENQSEQ 2041
Query: 2021 ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL 2080
AL L++I+S R++ + P ++P L+ P+SAFNA AL +LA+VAG LN L +IL AL+
Sbjct: 2042 ALSALREIISRRSSTIFPVLIPTLIKKPVSAFNARALSSLAQVAGVTLNKRLPSILNALM 2101
Query: 2081 -SAMGDDDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRR--SSAYLIG 2137
S++ D+ +L A + V L + +++ +R ++ +++
Sbjct: 2102 ESSLASTGDDLVAL-NGAIDKVNLSVKDQEGLQILMAHFYSFSESEDFRKRLFAAEHML- 2159
Query: 2138 YFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197
F++N KL + + I L D V AA A + +V+++ K+ S + +
Sbjct: 2160 VFFQNCKLDYYRYVGDWVRHFITLFEDKSQDVVVAAVAAQNTLVSALRKDQLDSLVSI-- 2217
Query: 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 2257
A + RD +G + +P F + + + +LPIFL GL+ G+ + REQ+ALG+ +++
Sbjct: 2218 -AYHSLRDVG---SQG--VNLPAFEVAQGVNSILPIFLYGLMHGTMDQREQSALGIADIV 2271
Query: 2258 EVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317
T L+ FV ITGPLIRIIG+RFP +VK AIL TL+II+ K L+PFLPQLQ T
Sbjct: 2272 LKTEPSKLRPFVTQITGPLIRIIGERFPVEVKCAILYTLNIILSKISTFLRPFLPQLQRT 2331
Query: 2318 FIKCLQD-STRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376
F KCL D S+ +R TR+ P++ +L+S + DAG+R+A+L AL V
Sbjct: 2332 FAKCLGDPSSEVIRSRAATALGTLITLQTRLAPIITELVSGARTPDAGVRKAMLNALFAV 2391
Query: 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXX 2436
+ +G++++ A + +L ++ +H+ V A + G + +
Sbjct: 2392 VSKSGQNMNEASAEAIEQLLDEISAESSEHM-VICAKLYGALFSHLPDAQAKQLLESKVL 2450
Query: 2437 XXXXPSWAARHGSVLVFATFLRHNPSAI---SMSPLFLSILDRLKSSLKDEKFPLREAST 2493
S SVL+ ++ I +S + SI+ +SL+ E + E
Sbjct: 2451 SLEIQS----EFSVLILNAAVKFGSQKIIELKLSDIVCSIIST--ASLQKE-VTIAENGI 2503
Query: 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553
ALG+ LL I N +V+ L + A S + RR AL ++ V+K N S I
Sbjct: 2504 LALGKALLADIPQSFGNAKNLVEALKVNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKP 2563
Query: 2554 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFP 2613
H+++ PA+ C++ PV+LAAE + FQL + K+I L+ R F
Sbjct: 2564 HISILAPAIFGCVRAIVIPVKLAAEAAFLALFQLVEDDSVLN---KYIETLEGPRARSFV 2620
Query: 2614 EH 2615
++
Sbjct: 2621 DY 2622
|
|
| UNIPROTKB|G4MR95 MGG_04710 "Translational activator GCN1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 2384 (844.3 bits), Expect = 4.3e-259, Sum P(2) = 4.3e-259
Identities = 602/1774 (33%), Positives = 944/1774 (53%)
Query: 851 SIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQL-PSLVKFVDPLLQSP--IVGDVAYE 907
+IRE+V+GV + + + +A P A + P++ +D + I GD A
Sbjct: 858 AIRERVRGVAAKVMRGVGVIKSLATGPPTDATLWMGPAVNALLDAVDAGACLITGDAAPT 917
Query: 908 ALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVN 967
A + + + L ++ I A T H +L+P E K + L R++
Sbjct: 918 AYLACADRVSSRLGSFRQFIGVA-----TLRAH-GVELLP---ENLKAEPFEDLVTRVMY 968
Query: 968 GLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD-----VL--QMLYKHMDXXXXX 1020
L + + P V S ++ P+ IL +D VL ++L H D
Sbjct: 969 RLRFAGEQRPFDVVSVNYMLPLALLILNKGGFGATAEDRDTHLVLATELLSFHTDTASSE 1028
Query: 1021 XX--XXMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN----EVASALHGVYTKDVHVR 1074
M+ L + V + I +++ + PN E+ G VR
Sbjct: 1029 ALPRAQMLETLISSMQVYNQHYKIIRDCFSDMVRCVAPNISEKEIGVVARGAIVPQTSVR 1088
Query: 1075 MACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS- 1133
L ++ +S +E S +WIA H+ + E A++IW+ G+ D
Sbjct: 1089 TTVLQSISADVDMS------ELEFSEEIWIAYHEDSEENVELAKEIWEESGFQTSKDVPV 1142
Query: 1134 GLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSLSTLFSLYIR----------DIGLG 1183
+ L + +R +P+++ L L Y+ + G+
Sbjct: 1143 KMLPYLESKDGQLRKAASRALAEACSNHPETVNLILEKLRLAYVEFAKPRVPELDEFGMP 1202
Query: 1184 GD-NVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRA-LADTNADVRGRMLNAGI 1241
++ W R GIA + A L+ + L FLI + L D N VR ML A
Sbjct: 1203 KKMDLSDPWEARHGIASSFKELAPYLKREHLDSFFAFLIEQGPLGDQNGSVRAEMLEAAN 1262
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
I+ HG+ V L FE L D V E V+I GALA+HL D K+ V
Sbjct: 1263 KAIEIHGKGMVDKLMKTFETTLEAPDKGSAAADRVNEAVIIMYGALARHLKAGDAKIPVV 1322
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFG 1361
+++L+ L+TPSEAVQ A++ CL PL+++ +++ +++ L+ S Y +RGAA+G
Sbjct: 1323 IERLIATLSTPSEAVQYAIAECLPPLVKACGNKSSKYFDEIMETLLTSKNYAVQRGAAYG 1382
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 1421
LAG+V G GI+SL+++ I + L L ++ A +RE ALLA+E L LGRLFEPYVI +
Sbjct: 1383 LAGLVLGRGIASLREFRIMSNLHSALENKKEANQRESALLAYELLATILGRLFEPYVILI 1442
Query: 1422 LPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481
+P LL F D ++LS+ GVK +LP+LL+GL+D WR+K+ + L
Sbjct: 1443 VPQLLAGFGDSNANVRDAALASAKACFARLSSYGVKQILPTLLRGLDDDQWRSKKGACDL 1502
Query: 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541
LGAMAY PQQL+ LP+I+P LT VL D+H +V+S +L++ G VI NPE+ LV
Sbjct: 1503 LGAMAYLDPQQLALSLPEIIPPLTAVLNDSHKEVRSGANKSLKRFGEVISNPEVKGLVDI 1562
Query: 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601
LL L+DP +T +LD L++ FV+ +DAPSLAL+ I+ RGL +RS TK+KA+Q++G
Sbjct: 1563 LLKALSDPTKYTDEALDSLIKVQFVHYLDAPSLALVSRILQRGLADRS-NTKRKASQVIG 1621
Query: 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661
++ L TE KD++ ++ +L+ +K +VDP+P R+ A+RA+GSL+ +GEE PDL+
Sbjct: 1622 SLAHL-TERKDLVSHLPVLVAGLKIAVVDPVPTTRATASRALGSLMEKLGEEALPDLIPG 1680
Query: 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 1721
L+ LKSD +R G+AQ LSEVLA LGT E LP I++N + +VR+G+++LF
Sbjct: 1681 LMQTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETLPTILQNVESSKPAVREGFMSLFI 1740
Query: 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781
+LP G F NYL +++P IL GLAD+ E++R+ AL AG +LV+++A ++ LLLP +E
Sbjct: 1741 FLPVCFGNSFANYLGRIIPPILSGLADDIEAIRETALKAGRLLVKNFAVRAVDLLLPELE 1800
Query: 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841
G+ +D++RIR SSVEL+GDLLF + G SGK E G +DE + G ++ E LG +K
Sbjct: 1801 RGLADDSYRIRLSSVELVGDLLFNLTGISGKT--EDGDEDEEEKVKEAGNSLREALGDEK 1858
Query: 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXER 1901
RN++L+ALY+ R D + SVR AA+ VWK +V++ PKTLKE++P L +I E
Sbjct: 1859 RNKILSALYICRCDTATSVRAAAVAVWKALVSS-PKTLKELVPTLTQLIIRRLGSTNMEH 1917
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMASAGKSQLL 1960
+ +A ALGEL+RK G+ VL S++P L GL+ + RQG+C+ L E+++SA + L
Sbjct: 1918 KVIASNALGELIRKAGDNVLSSLLPTLEEGLQTSTDVDARQGICLALKELISSASEEALE 1977
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
LI +RTAL DS EVRE+A AF +L + G +A+D+++P LL+ L + ++
Sbjct: 1978 EHEKILISVVRTALTDSDTEVREAAAEAFDSLQQILGKRAVDQVLPFLLNLLRSEDEAEN 2037
Query: 2021 ALDGLKQILS--VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
AL L +L+ R+ +LP+++P L+ P+SAFNA AL +L+ VAG +N L I+ +
Sbjct: 2038 ALSALLTLLTETTRSNIILPNLIPTLIAPPISAFNAKALASLSRVAGAAMNRRLPNIVNS 2097
Query: 2079 LLSAMGD-DDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSA-YLI 2136
L+ + + D ++ + TV ID + ++ +R++ +
Sbjct: 2098 LMDNLVNCKDDSLREDLDASFHTVISSIDEYDGLNTVMNVLLQLTKHEDHRKRAATGKQL 2157
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 2196
F+ + + ++I +L++ DSD V +AW ALS + KE + +
Sbjct: 2158 ARFFAATDVDYSRYNQDIIRSLLISFDDSDMEVVKSAWSALSEFTKKLRKEEMEALV--- 2214
Query: 2197 RDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGEL 2256
+ST + + G + GF LPK + +LPIFLQGL++G+ + + Q+AL + ++
Sbjct: 2215 ---VSTRQTLLQVGVAGNNL--KGFELPKGVSAILPIFLQGLMNGTPDQKIQSALAISDI 2269
Query: 2257 IEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQT 2316
+ TSE SLK FV+ ITGPLIR++ +R +VKSAIL TL+ ++ K ALKPFLPQLQ
Sbjct: 2270 VARTSEASLKPFVVQITGPLIRVVSERST-EVKSAILLTLNNLLEKMPTALKPFLPQLQR 2328
Query: 2317 TFIKCLQDST-RTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKG 2375
TF K L D+T +R RVDPL+ +L++ + +D G+R A+L AL
Sbjct: 2329 TFAKSLADTTSEQLRSRAAKALGTLIKYTPRVDPLIAELVTGSKTTDPGVRTAMLKALFE 2388
Query: 2376 VLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXX 2435
V+ AG ++ + V ++ DD + V+ A +LG + + +
Sbjct: 2389 VISKAGANMGEPSRAAVLGLIDMETDEKDDAMTVTNAKLLGALVKNVSGDAAHNLIKSRV 2448
Query: 2436 XXXXXPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 2495
P+ + SVL L P+AI P + + L + + + + S A
Sbjct: 2449 LTPT-PTTS----SVLGLNAVLLDAPAAIMEGPFAEELPELLVQGISSKIAMIADNSILA 2503
Query: 2496 LGRLLLHQIQSGP-ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554
G+ LL++ QS P +T V + LA+ V + ++ RR +L +++V++ N H
Sbjct: 2504 AGKYLLNE-QSKPFEHTKAVFEALANTVGP--GNPTDSRRLSLVVVRTVSRVNMDLARPH 2560
Query: 2555 VA-LFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
+ L GP A ++D PV+LAAE V F +
Sbjct: 2561 LPQLAGPVFAS-VRDPVIPVKLAAEAAFVSLFNV 2593
|
|
| ASPGD|ASPL0000003073 AN10734 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 2289 (810.8 bits), Expect = 1.0e-256, Sum P(3) = 1.0e-256
Identities = 533/1388 (38%), Positives = 819/1388 (59%)
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
+ NEV L G D VR A L A+ ++ E+I W+ HD +
Sbjct: 1066 INENEVNVLLKGTIVSDPSVRSAVLQAIDAEIDLTDMDFSEHI------WLECHDHVEEN 1119
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSL-ST 1171
AE AE IW+ G + T Y L L + N+R E S+ G + S
Sbjct: 1120 AEIAESIWEENGLEIDETAYGKLIPYLDSRDSNLRGAAARAIAHAI-ESNHSVFGDIISQ 1178
Query: 1172 LFSLYIRDI----------GLGG--DNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTF 1219
L S Y +I G+ D D W R GIALA + ++ + + F
Sbjct: 1179 LQSKYEFEIRPKEPEKDKYGMPKKVDTTDH-WESRSGIALAFGAMQNLFEGDQIVSFLRF 1237
Query: 1220 LISRA-LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LI R L D ++ VR +M ++G +I G++ V L + E L E DL+ E
Sbjct: 1238 LIERGPLIDRSSVVRDQMADSGKGVIAARGQEKVEELMKLLETTLETSDKGSETSDLLNE 1297
Query: 1279 GVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
VV+ G+LA+HL DDP++ V+ +LL L TPSE+VQ AVS CL PL++ ++
Sbjct: 1298 AVVVLYGSLAQHLKSDDPRLQTVIKRLLATLPTPSESVQSAVSDCLPPLIRLAGRQSGKY 1357
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+LDQ+++S Y +RGAA+GLAG+VKG GI +L+++ + L++ ++ +R G
Sbjct: 1358 AQEMLDQILQSKDYATQRGAAYGLAGIVKGRGIVTLREFRVMPHLQDAAENKKEPHKRLG 1417
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKL 1458
AL+A+E LGR +EPYVIQ++P LL +F D S LS+ GVK
Sbjct: 1418 ALMAYELFATILGRTYEPYVIQVVPQLLTSFGDPNADVREACLYTAKACFSNLSSYGVKK 1477
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP+LL+GL+D WR+++ + LLGAMAY PQQL+ LP+I+P LT VL DTH +V++A
Sbjct: 1478 ILPTLLEGLDDTQWRSQKGACDLLGAMAYLDPQQLAVSLPEIIPPLTVVLNDTHKEVRNA 1537
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+LQ+ G VI NPEI SLV LL L+DP T +LD L++ +FV+ +DAPSLAL+V
Sbjct: 1538 ANRSLQRFGEVISNPEIKSLVNVLLKALSDPTKFTDEALDALIKVSFVHYLDAPSLALVV 1597
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
I+ RGL +RSA TK+K+AQI+G++ L TE KD+I ++ +++ + +VDP+P R+
Sbjct: 1598 RILERGLGDRSA-TKRKSAQIIGSLAHL-TERKDLITHLPIIVSGLNLAIVDPVPTTRAT 1655
Query: 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698
A++A+GSLI +GE+ PDL+ L+ LKSD +R G+AQ LSEVLA LGT E L
Sbjct: 1656 ASKALGSLIEKLGEDALPDLIPNLMSTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETL 1715
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758
P I++N S +A++R+G++TLF YLP G F YL +++P IL GLAD+ +++R+ +L
Sbjct: 1716 PTILQNVSSSKATIREGFMTLFIYLPACFGNSFAPYLGRIIPPILAGLADDVDTIRETSL 1775
Query: 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818
AG +LV+++++ ++ LLLP +E G+ +D++RIR SSVEL+GDLLF + G + K E
Sbjct: 1776 RAGRLLVKNFSSKAIDLLLPELERGLADDSYRIRLSSVELVGDLLFSITGITAKT--EAE 1833
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878
+DE A+ +A G++++EVLG ++R++VL+AL++ R D S V+ AA+ VWK++VA+ P+T
Sbjct: 1834 EEDEEAA-QA-GQSLLEVLGEERRDKVLSALFICRCDTSGLVKTAAMGVWKSLVAS-PRT 1890
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSA 1937
LKE++P L +I E++ +A ALG+L++K GE VL +++P L GL+ P
Sbjct: 1891 LKEMVPTLSQLIIRRLGSSNMEQKVIASNALGDLIKKAGESVLATLLPTLEDGLQTSPDV 1950
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+QG+CI L E++AS+ L + LI +R AL D+ +VRE+A AF L + G
Sbjct: 1951 DVKQGICIALKEIIASSSPDALEDYEKILISIVRVALVDNDDDVREAAAEAFDALQQILG 2010
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA--VLPHILPKLVHLPLSAFNAH 2055
+A+D+++P LL L +D+ ++ AL L +L+ +T A +LP+++P L+ P+S FNA
Sbjct: 2011 KKAVDQVLPHLLLLLRNDEDAEQALSALLTLLTEQTRANIILPNLIPTLLTSPISTFNAK 2070
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDXXXXXXX 2113
AL +LAEVAG + L TIL L+ + DD + L +A T+ + +D
Sbjct: 2071 ALASLAEVAGSAMARRLPTILNTLMDNIITCKDDEQRKEL-DDAFSTILVSVDEFDGLNV 2129
Query: 2114 XXXXXKGVGDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAA 2172
+ + RR+ +A + F+ ++++ ++I L++ D D V A
Sbjct: 2130 MMSVMLALIKHDDERRRTRAADHLRRFFSDAEIDFSRYHQDLIRVLLISFDDPDKDVVKA 2189
Query: 2173 AWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL-IPGFCLPKALQPLL 2231
AW ALS + + + KE ++V+ ++ T ++ K G P +PGF LPK + +L
Sbjct: 2190 AWGALSGLTSRLRKEE----MEVL--SVPT---RQILKGVGVPGADLPGFSLPKGITAIL 2240
Query: 2232 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291
PIFLQGL++GS E R QAAL +G+LI+ T+ SLK FV ITGPLIR++ +R +K A
Sbjct: 2241 PIFLQGLLNGSVEQRTQAALAIGDLIDRTAADSLKLFVTQITGPLIRVVSERSV-DLKCA 2299
Query: 2292 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRXXXXXXXXXXXXXXTRVDPL 2350
I TL+ +++K +A+KPFLPQLQ TF + L D T T+R RVDPL
Sbjct: 2300 IFFTLNKLLQKIPLAVKPFLPQLQRTFARGLADQTSETLRNRAAKGLGILITLTPRVDPL 2359
Query: 2351 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 2410
+ +L++ + +D G+R A++ AL+ V+ AG ++S A K + +++ D D V ++
Sbjct: 2360 IAELITGTKTADVGVRNAMMKALQEVVGKAGANMSEASKNSLLALIDDDASDQTDAVAIT 2419
Query: 2411 AASILGIM 2418
A +LG +
Sbjct: 2420 NAKLLGAL 2427
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54WR2 | GCN1L_DICDI | No assigned EC number | 0.3313 | 0.8661 | 0.8515 | yes | no |
| Q92616 | GCN1L_HUMAN | No assigned EC number | 0.3386 | 0.9641 | 0.9464 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00026717001 | SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (2597 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00034459001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (900 aa) | • | • | 0.503 | ||||||
 | GSVIVG00019376001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa) | • | • | 0.482 | ||||||
 | GSVIVG00001918001 | SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa) | • | • | 0.476 | ||||||
 | GSVIVG00025547001 | RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6; (1518 aa) | • | 0.412 | |||||||
 | GSVIVG00006684001 | SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (716 aa) | • | • | • | 0.410 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2622 | |||
| pfam12074 | 329 | pfam12074, DUF3554, Domain of unknown function (DU | 1e-29 | |
| COG5181 | 975 | COG5181, HSH155, U2 snRNP spliceosome subunit [RNA | 2e-08 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 2e-05 | |
| COG1413 | 335 | COG1413, COG1413, FOG: HEAT repeat [Energy product | 4e-05 | |
| pfam01602 | 522 | pfam01602, Adaptin_N, Adaptin N terminal region | 2e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.001 |
| >gnl|CDD|221409 pfam12074, DUF3554, Domain of unknown function (DUF3554) | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 82/354 (23%), Positives = 132/354 (37%), Gaps = 40/354 (11%)
Query: 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKR 405
P Q+ + NAL L S+S +I LL E NE A+LSA
Sbjct: 1 PDQKALIANALSALPVF-------SVSPSIVDGLLPLLSKESNEAALNALLSAFGKHLFF 53
Query: 406 SADIIQSDLLSFFASGLKEKEA-LRRGHLRCLRVICTNTDAVLQ-VSSLLGPLIQLVKTG 463
+ + D++ GL EK+ LR+ L L N A L + L L++++K
Sbjct: 54 LTEEVPDDVVDAIKKGLAEKKPPLRKIWLLSLGEALWNNSASLPLIEDFLPKLLKILKEA 113
Query: 464 FTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPS-LVPTAMIS 517
+ + L G Y L + + K WSLV +PS L+ S
Sbjct: 114 ASNPLPAAQNGTLSGAYVLLSLTPSLSK--------KLIKFWSLVLDPKPSFLLSPKFYS 165
Query: 518 KLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHDATR 575
KLS +D + L L H + E Q + P W++RK A +
Sbjct: 166 KLSDEDLCWVLRALEALFSGHPSELAEDKIA--WGQAWIYVLLSPSLPWEVRKRALQLLK 223
Query: 576 KIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
K+++S P L+ +++ N+L K S + + + S +
Sbjct: 224 KLLSSNPGVLANSIISALWNWLEAHELG---PKESSIESTSLKFLTPVFSALSLALSEKD 280
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVS 688
A +++ ++ +HHP I W L CLR+ G + E+V
Sbjct: 281 SADISIGLEKLLV-SLLVLAHHPLIPIVS-----WIGL--CLRS-GLDPGELVR 325
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This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with pfam02985. Length = 329 |
| >gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-08
Identities = 128/767 (16%), Positives = 263/767 (34%), Gaps = 124/767 (16%)
Query: 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDP 1935
+++P+LM S ER V + L+ L + +P I+ ++ L D
Sbjct: 205 FNKVLPMLM-----SRELEDQERHLVVK-LIDRLLYGLDDLKVPYVHKILVVVGPLLIDE 258
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
RR C+G E++ + L F + ++R + VR G A + +
Sbjct: 259 DLKRR---CMG-REIILNLVYRCGLGFS---VSSMRPDITSKDEYVRNVTGRAVGVVADA 311
Query: 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH------ILPKLV---H 2046
G++ + + L + + + T + +QI + + L H + KL+
Sbjct: 312 LGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRS 371
Query: 2047 LPLSAFNAHALGALAEVAGP---------------GLNFHLGTILPALLSAMGD--DDMD 2089
+ A+AL LAE+ GP G + H G L + L AMG M
Sbjct: 372 RFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMS 431
Query: 2090 VQSLAKEAAETVTLVI------DEEG-------------VESLVSELL-----------K 2119
+ + E + +V DEE V + L
Sbjct: 432 PEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF 491
Query: 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
A RRS ++ L + P + ++ SD +SR
Sbjct: 492 WR-RRSAGDRRSYKQVV---LTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSR 547
Query: 2180 VVASVPK-EVQPSYIKVIRDAI------STSRDKERRKKKGGPILIPGFCLPKALQPLLP 2232
+ + + + + + D+I + ++ F L ++
Sbjct: 548 IFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVS 607
Query: 2233 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAI 2292
L+ L S ++R +AA +G L +V + + + L +G+ +P + S +
Sbjct: 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSIL 667
Query: 2293 LSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDP-- 2349
+ SI +++P + + + L++ + V ++ +G + S +
Sbjct: 668 KAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVRE 727
Query: 2350 ---LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ +L+ SL+ + IR + + G V +L + + +
Sbjct: 728 WMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ-------DVLDILLNNLKVQERQ 780
Query: 2407 VRVSAASILGIMSQ-CMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR--HNPS- 2462
RV + + I+++ C +L L++ +P ++G + S
Sbjct: 781 QRVCTSVAISIVAEYCG----PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836
Query: 2463 --AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV---VDI 2517
S++PL L+ +L D R+ + ++ + T + +
Sbjct: 837 DYVYSITPL-------LEDALTD-----RDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHL 884
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKA-NPSAIMVHV--ALFGPA 2561
L + + + S V + ++S A A+M +V LF P+
Sbjct: 885 LNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPS 931
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Length = 975 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 2340
W+V+ A L + G L+P +P+L + L+D VR +AA ALG++
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-05
Identities = 62/279 (22%), Positives = 102/279 (36%), Gaps = 50/279 (17%)
Query: 2276 LIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAAL 2335
L++++ D V+ + L G + + +P L + L D VR +AA
Sbjct: 48 LLKLLEDE-DLLVRLSAAVAL------GELGSEEAVPLL----RELLSDEDPRVRDAAAD 96
Query: 2336 ALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV-LKHAGKSVSSAVKIRVYS 2394
ALG+L V PLV L + + G+R A AL + + A + A++
Sbjct: 97 ALGEL-GDPEAVPPLVELLENDE---NEGVRAAAARALGKLGDERALDPLLEALQDEDSG 152
Query: 2395 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS--PSWAARHGSVLV 2452
+ VR +AA LG + D + LL ELL + AA S L
Sbjct: 153 SAAAALDAALLDVRAAAAEALG----ELGDPEAIPLLIELLEDEDADVRRAAA---SALG 205
Query: 2453 FATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTT 2512
D L +L DE +R+A+ ALG + +
Sbjct: 206 QLGSENVE------------AADLLVKALSDESLEVRKAALLALGEIGDEE--------- 244
Query: 2513 VVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI 2551
+ ++ AL D+ + A +AL ++ A +
Sbjct: 245 ----AVDALAKALEDEDVILALLAAAALGALDLAEAALP 279
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Length = 335 |
| >gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-04
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ-ASI 2128
HL I+ L + DDD+ + A + + ++DE V+ +V ELLK V +
Sbjct: 301 QHLDLIIFCLKT---DDDISI---RLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEF 354
Query: 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
+ IG + +A I L+ LLS + S V E + ++ P
Sbjct: 355 KIKLVKAIGRLAEKF----PTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYP 407
|
This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSS 2530
L L S L ++ + AL L N VV+ L ++V L +
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAG----NNDNIQAVVEAGGLPALVQLLKSEDE 63
Query: 2531 EVRRRALSALKSVAKANPS-AIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
EV + AL AL+++A ++V A P L L + ++ A
Sbjct: 64 EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2622 | |||
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.97 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.97 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.97 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.96 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.95 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.93 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.92 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.92 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.9 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.9 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.87 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.85 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.82 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.67 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.6 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.44 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.42 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.41 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.39 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.3 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.26 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.24 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.19 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.18 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.17 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.07 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.92 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.91 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 98.84 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.84 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.84 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 98.82 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.8 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.79 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.76 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.73 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.67 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 98.67 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.66 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.65 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.65 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.63 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.62 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.61 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.57 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.54 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.54 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.53 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.52 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.48 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.46 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.45 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.45 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.45 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.41 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 98.4 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 98.35 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.35 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.32 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 98.32 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.3 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.29 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.28 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.27 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.25 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.22 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.2 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 98.12 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.11 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.1 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.08 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 98.06 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 98.03 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 98.0 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.97 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.92 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.91 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.91 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.86 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.85 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.82 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.82 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.79 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 97.78 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.77 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.73 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.7 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.7 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.65 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.64 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.63 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.44 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.38 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.3 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.3 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 97.14 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.13 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.1 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 97.1 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.06 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.03 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.03 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.01 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.97 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.97 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 96.95 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.94 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.92 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.81 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.8 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 96.8 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 96.76 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.74 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.71 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.69 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.68 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.66 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 96.51 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.39 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 96.38 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 96.34 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.33 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 96.25 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.21 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.02 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 96.02 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.02 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 95.92 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.9 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.8 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.75 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 95.73 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.7 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 95.6 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.51 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 95.5 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 95.49 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.44 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 95.39 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.28 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.2 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 95.18 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.09 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.06 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 94.97 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 94.95 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 94.9 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 94.9 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 94.9 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 94.89 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 94.86 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.69 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 94.64 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 94.51 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 94.47 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 94.46 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 94.34 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 94.06 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 93.96 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 93.87 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 93.76 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 93.74 | |
| COG5234 | 993 | CIN1 Beta-tubulin folding cofactor D [Posttranslat | 93.71 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 93.67 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 93.66 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 93.57 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 93.26 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 93.18 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 93.13 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 93.07 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 92.69 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 92.57 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 92.49 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 92.44 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 92.08 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 92.04 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 91.98 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 91.84 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 91.81 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 91.76 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 91.5 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 91.35 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 91.31 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 91.15 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 91.09 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 90.82 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 90.64 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 90.58 | |
| KOG1837 | 1621 | consensus Uncharacterized conserved protein [Funct | 90.48 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 89.98 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 89.93 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 89.77 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 89.77 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 89.73 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 88.69 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 88.68 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 88.3 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 87.71 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 87.49 | |
| KOG3961 | 262 | consensus Uncharacterized conserved protein [Funct | 87.15 | |
| KOG1837 | 1621 | consensus Uncharacterized conserved protein [Funct | 86.67 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 86.51 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 86.51 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 86.42 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.02 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 85.86 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 85.19 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 83.91 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 83.7 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 83.59 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 82.82 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 82.81 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 82.52 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 82.17 | |
| KOG1848 | 1610 | consensus Uncharacterized conserved protein [Funct | 81.92 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 81.6 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 81.47 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 81.29 | |
| KOG2213 | 460 | consensus Apoptosis inhibitor 5/fibroblast growth | 80.31 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 80.01 |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-55 Score=533.10 Aligned_cols=561 Identities=50% Similarity=0.756 Sum_probs=525.2
Q ss_pred HHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHH
Q 000050 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2622)
Q Consensus 1201 l~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~ 1280 (2622)
++.+...+..++....+.|+++.| .|+...||..|++++..++..||.+.+..++|.|++.++.. .++.+|+++
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-----~~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-----HNDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-----hhHHHhhhh
Confidence 444455555555555577887777 99999999999999999999999999999999999999863 278999999
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHH
Q 000050 1281 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360 (2622)
Q Consensus 1281 ~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~ 1360 (2622)
++++|.++.|+...|+++..+++.+++.+.+|++.||.+++.|+++++..........+..++..+.+..+...|++|++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999887766655555555555556778999999999
Q ss_pred HHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHH
Q 000050 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2622)
Q Consensus 1361 ~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa 1440 (2622)
++++++++.|...+....++..+.+.+.++++...|+++++++...+..+|..++||+..++|.++.+++|....||++|
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999888999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHH
Q 000050 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2622)
Q Consensus 1441 ~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~ 1520 (2622)
..+.+.++..++.++++.++|+++..+.+..|+++.++++++|.|++++|++++.++|.++|.+.+.|.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHH
Q 000050 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2622)
Q Consensus 1521 ~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l 1600 (2622)
.||..+++.+.|++++.++|.|++++.||+..+.+|++.+..++|++++++++++.++|.+.+++.+++...++.++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHH
Q 000050 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2622)
Q Consensus 1601 ~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~ 1680 (2622)
+++|..+.+++++.||++.++|.+...+.|+.|++|..++++||.+.+.+|+..+++..|++++.+..+....+|.+.++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999998999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhchhHHHhHhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHH
Q 000050 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2622)
Q Consensus 1681 ~L~~i~~~~g~~~l~~llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al 1758 (2622)
.+++++...|.+...+++|.++...... ++.+|++.+.++..++..+|..|++|+..+++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999887664 66799999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 000050 1759 GAGHVLVEH 1767 (2622)
Q Consensus 1759 ~al~~lv~~ 1767 (2622)
++...+..+
T Consensus 557 ~~~~~~~~~ 565 (569)
T KOG1242|consen 557 EAGEVEVLN 565 (569)
T ss_pred hhhhhhhcc
Confidence 887765544
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=492.10 Aligned_cols=1023 Identities=17% Similarity=0.196 Sum_probs=742.9
Q ss_pred hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH----HHHHHHHhc--cc-cccC
Q 000050 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQT--TF-VNTV 1569 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r----~al~~L~~~--~~-~~~~ 1569 (2622)
.++++..+++.|.|.+++|+..|++|++.+++.++...+..++..|+..+-...+..| -++.+.+.. .+ ....
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l 124 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL 124 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence 4678899999999999999999999999999999888899999999988655555555 244444431 11 1234
Q ss_pred ChhhhhhHHHHHHhhhcC--CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1570 DAPSLALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1570 ~~~~l~~i~p~L~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
.......+.|.+..++.. ....++-.++++++.+...+|+ -+.+|...++..+...+..+...||+.+..++|.++
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~--ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT--LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence 455667778888777643 3456888899999888877665 566678888888888899999999999999999999
Q ss_pred hhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHhHhHHHHHhc---cCCChhhHHHHHHHHH
Q 000050 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNC---SHQRASVRDGYLTLFK 1721 (2622)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l---~~~~~~vR~~al~~l~ 1721 (2622)
...+.+.+..++..+.+.|.+.......+..+++++.++++.|.. +++.++|.+.+.+ +..++++|+.++++|+
T Consensus 203 ~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 203 SSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 999988999999999999987766666677899999999999976 4578899998888 5678999999999999
Q ss_pred HhhhhhCcchhhhHHhHHHHHHhhcCCCCh----------------------------------HHHHHHHHHHHHHHHH
Q 000050 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENE----------------------------------SVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~----------------------------------~VR~~al~al~~lv~~ 1767 (2622)
.+...++.+..||.+.++..++++++.+.. .||.+|.+++..++..
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999873211 1555555555554432
Q ss_pred hhhc---hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHH
Q 000050 1768 YATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2622)
Q Consensus 1768 ~~~~---~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~ 1844 (2622)
..+. ....+-|.+....++....++...+...-.++.+.+....-....+..|..+.. .....+.+ ....
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~--s~~~~L~~-----~~~~ 435 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP--SDLSMLSD-----QVPL 435 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc--cchHHHHh-----hhHH
Confidence 2111 111233334444444444455555555555554433321100000000000000 00011111 1123
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhccc---
Q 000050 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS--SERRQVAGRALGELVRKLGER--- 1919 (2622)
Q Consensus 1845 il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~--~~~R~~A~~~L~~lv~~~~~~--- 1919 (2622)
++.++-..+.+.+...|..++..+..++...|..+.++++.++|.+...++|.+ ...+..+..++.......++.
T Consensus 436 iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh 515 (1233)
T KOG1824|consen 436 IVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH 515 (1233)
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc
Confidence 444444444466666899999999999999999999999999999999998654 456777777776666555544
Q ss_pred -hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh------hhHHHhHHhHHHHHHHHh--cCCcHHHHHHHHHHHH
Q 000050 1920 -VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFS 1990 (2622)
Q Consensus 1920 -~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~d~~VR~~A~~al~ 1990 (2622)
..+.+.|++.....++-+.+-..++....+++....+ -...+|...++....+.+ .|.|.+||+.|+.|++
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmg 595 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMG 595 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4567788888889999998888887777777665433 234678888888887766 4789999999999999
Q ss_pred HHHHHhChh---hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHH-hCC
Q 000050 1991 TLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGP 2066 (2622)
Q Consensus 1991 ~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~-~g~ 2066 (2622)
.+..++|.. ....++|.+++.|+++.++-.+. +|+.-++.. ..-
T Consensus 596 q~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~Av--------------------------------kAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 596 QIIANFGDFLGNELPRTLPILLERLGNEITRLTAV--------------------------------KALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHH--------------------------------HHHHHHHhcccee
Confidence 999888853 23445666777776665443333 344333331 233
Q ss_pred ChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh----hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 000050 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2622)
Q Consensus 2067 ~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~ 2142 (2622)
++.+.+..+++.+...+....+..|.....++..++.+++. ..+..++.++...+.+.+.++-+.|..++..++..
T Consensus 644 ~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 644 DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 46688889999999999888888999999999999887643 44788888888888888899999999999999888
Q ss_pred ccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcC---ccchhhHHHHHHHHHhhchhhhhhhhcCCccccc
Q 000050 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP---KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219 (2622)
Q Consensus 2143 ~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~---~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~ 2219 (2622)
.+..+......+++.++.++..+- +...|..++-.+....- ...++ +.. +...+... +.
T Consensus 724 ~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~-y~~-l~s~lt~P--------------V~ 785 (1233)
T KOG1824|consen 724 QPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLD-YIS-LLSLLTAP--------------VY 785 (1233)
T ss_pred ccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCcc-HHH-HHHHHcCC--------------cc
Confidence 777777777888999998887653 33444443333322111 01111 110 11111000 00
Q ss_pred cCCCCcCchhhHHHHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHh-hcCCCCHhhHHHHHHHHH
Q 000050 2220 GFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLS 2297 (2622)
Q Consensus 2220 g~~~~~~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~-l~~~~~~~vk~~al~~L~ 2297 (2622)
+. ...+ +.......+.|.+.++..++ +.-++.+.. |+.- ...+.+..+|..++.+||
T Consensus 786 ~~----------------~~~~l~kqa~~siA~cvA~Lt~~~~-~~s~s~a~k----l~~~~~s~~s~~~ikvfa~LslG 844 (1233)
T KOG1824|consen 786 EQ----------------VTDGLHKQAYYSIAKCVAALTCACP-QKSKSLATK----LIQDLQSPKSSDSIKVFALLSLG 844 (1233)
T ss_pred cc----------------cccchhHHHHHHHHHHHHHHHHhcc-ccchhHHHH----HHHHHhCCCCchhHHHHHHhhhh
Confidence 00 0001 11222345677777777766 233333333 3333 333457789999999999
Q ss_pred HHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHH
Q 000050 2298 IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 2377 (2622)
Q Consensus 2298 ~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi 2377 (2622)
+++++.+.. ..+.+..+++++++.++++|+.+|+.|||.+.. ++.+.|+|+++..+.+ ++.-++..+++|++++
T Consensus 845 Elgr~~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--gnl~~yLpfil~qi~s-qpk~QyLLLhSlkevi 918 (1233)
T KOG1824|consen 845 ELGRRKDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--GNLPKYLPFILEQIES-QPKRQYLLLHSLKEVI 918 (1233)
T ss_pred hhccCCCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--CchHhHHHHHHHHHhc-chHhHHHHHHHHHHHH
Confidence 999876643 345667799999999999999999999999876 7889999999999975 5677899999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchH-------------------------------
Q 000050 2378 KHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ------------------------------- 2426 (2622)
Q Consensus 2378 ~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~------------------------------- 2426 (2622)
.........++.+.||.+|+..+...++++|+.+|+|||.|+.+.|+.-
T Consensus 919 ~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p 998 (1233)
T KOG1824|consen 919 VSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP 998 (1233)
T ss_pred HHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCC
Confidence 8877665578999999999999999999999999999999998877521
Q ss_pred ------HHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHH------------------hhhc
Q 000050 2427 ------LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK------------------SSLK 2482 (2622)
Q Consensus 2427 ------~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~------------------~~~~ 2482 (2622)
..+.+.+++..+.+++...|+-+..+++++....|.-+ .++.+++++.++ +|..
T Consensus 999 ~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI--rDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~V 1076 (1233)
T KOG1824|consen 999 QPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI--RDLLPELLPLLYSETKVRKELIREVEMGPFKHTV 1076 (1233)
T ss_pred CccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH--HHHHHHHHHHHHHhhhhhHhhhhhhcccCccccc
Confidence 11222233444556666666666667777777666655 345666666655 5678
Q ss_pred cCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHH
Q 000050 2483 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 2562 (2622)
Q Consensus 2483 ~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l 2562 (2622)
|++..+|++|++||+.+++.|.++ .++.+|+..+..|+.|. .|+|.+++.++..+|..+|..|.+.++.++++|
T Consensus 1077 DdgLd~RKaaFEcmytLLdscld~-----~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpL 1150 (1233)
T KOG1824|consen 1077 DDGLDLRKAAFECMYTLLDSCLDR-----LDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPL 1150 (1233)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhh-----ccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 889999999999999999999765 46789999999999986 899999999999999999999999999999999
Q ss_pred Hhhhc------------CCcchhhchhHHHHHHHhcccccchhHHHHHHHhhchhhhhhccCCCccccc
Q 000050 2563 AECLK------------DGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHRYFV 2619 (2622)
Q Consensus 2563 ~~~~~------------~~~~~vk~aae~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2619 (2622)
.+.+. ++....|++|.||+.+++++++. ++-+.|.+|. .||.+.||+++..
T Consensus 1151 r~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v-~~np~~~df~-----sqik~~pel~~~f 1213 (1233)
T KOG1824|consen 1151 RKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEV-EKNPQFSDFE-----SQIKSNPELAAIF 1213 (1233)
T ss_pred HHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhccccc-ccChHHHHHH-----HHhhcChhHHHHH
Confidence 99864 34666789999999999999885 4667888888 8999999988653
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=465.27 Aligned_cols=906 Identities=17% Similarity=0.195 Sum_probs=641.5
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcCCCC
Q 000050 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~~~ 1128 (2622)
..+.+|+++++|||+.+|+.|+++|++.+... + .......+..+..++++|++|. ++|...+.+.
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE----P---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc----c---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 47899999999999999999999999887553 1 1223334566777777777753 6899888778
Q ss_pred CCCh-HhHHHHh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhh
Q 000050 1129 GTDY-SGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2622)
Q Consensus 1129 ~~~~-~~Ll~~l-~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~ 1205 (2622)
++.+ ..||..+ ..+...||++.|+++|+++.. .|+.|+++++.|+++.. +.+-..|+.+.+.|..++
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----------S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----------SPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----------CCCcchhHHHHHHHHhhh
Confidence 7777 7777644 567889999999999999864 56689999999987642 223478999999999999
Q ss_pred hhhCCCChhHHHHH--HHhhhcCCCCHHHHHHHHHHHHHHHHHhc--cc---hhhhhHHHHHHHhcCC--CCChhhhhhh
Q 000050 1206 DVLRTKDLPVIMTF--LISRALADTNADVRGRMLNAGIMIIDKHG--RD---NVSLLFPIFENYLNKK--ASDEEKYDLV 1276 (2622)
Q Consensus 1206 ~~~~~~~~~~i~~~--li~~~l~d~~~~VR~~a~~a~~~~i~~~g--~~---~~~~llp~~~~~l~~~--~~~~~~~~~v 1276 (2622)
..+++...+.+-.+ ++.++++|++..||..+++|...++.... +. ....++|.+...+... ..+++..+.+
T Consensus 147 ~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~ 226 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSA 226 (1075)
T ss_pred hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHH
Confidence 99998876643333 33689999888899999999999988875 22 2334555433333321 1121122233
Q ss_pred hhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcCCC--CHHHHHHHHhhhHhhHhhhc---cc----hHHHHHHHHHHHh
Q 000050 1277 REGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQ---DE----APTLVSRLLDQLM 1347 (2622)
Q Consensus 1277 r~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~--~~~Vq~~a~~~L~~lv~~~~---~~----~~~~i~~Ll~~L~ 1347 (2622)
-+....+.+...+.+ .+.+..+++..+...++. ++.+|..+.+++..+..... .. ...+++.++..+.
T Consensus 227 l~~l~El~e~~pk~l---~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 227 LEALIELLESEPKLL---RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMT 303 (1075)
T ss_pred HHHHHHHHhhchHHH---HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcC
Confidence 333333333222222 456777888888877776 47899999999887776521 11 1344555554443
Q ss_pred cCC--------------C-hHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000050 1348 KSD--------------K-YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2622)
Q Consensus 1348 ~~~--------------~-~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~ 1412 (2622)
+.. + ....+.|..+|+.++.++|++.+.+ .+++.+..++++. +|..|++|+++++.+++|+++
T Consensus 304 e~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p-~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~ 381 (1075)
T KOG2171|consen 304 EEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP-PLFEALEAMLQST-EWKERHAALLALSVIAEGCSD 381 (1075)
T ss_pred CcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHH
Confidence 211 1 2356789999999999999988854 7999999999998 799999999999999999999
Q ss_pred cchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhhHHHHHhhccCC-ChhhHHHHHHHHHHHHh
Q 000050 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAY 1487 (2622)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~ 1487 (2622)
.+.+.+.+++|.++.++.|+++.||.+|+.|++++...+.++ ....+.|.++..+++. +.++...|+.++.++.+
T Consensus 382 ~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 382 VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988876 3466777888888774 56888888888877776
Q ss_pred -hCchhhhhhhhhhHH-HHhhhhcCCCHHHHHHHHHHHHHHhhhcCC---hhHHhHHHHHHhhcCCCChhHHHHHHHHHh
Q 000050 1488 -CAPQQLSQCLPKIVP-KLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2622)
Q Consensus 1488 -~~p~~l~~~L~~ivp-~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~ 1562 (2622)
+....+.+||+.++. .+..+++...+.||+.++.+|+.++...++ ||++.++|.|...+...+..
T Consensus 462 ~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~---------- 531 (1075)
T KOG2171|consen 462 ECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK---------- 531 (1075)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch----------
Confidence 455678999999999 555555677899999999999999988775 57788888888877655421
Q ss_pred ccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHH---hcCCCHHHHHHH
Q 000050 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV---LVDPIPEVRSVA 1639 (2622)
Q Consensus 1563 ~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~---L~d~~~~vR~~a 1639 (2622)
.....|.+..++++.++..+|. +.|.|+...++..+... ..+.+...|...
T Consensus 532 -------------------------d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 532 -------------------------DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred -------------------------hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 1136777888889888888875 67899999999999888 445566789999
Q ss_pred HHHHHHHHhhhCCC---CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHH
Q 000050 1640 ARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2622)
Q Consensus 1640 ~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a 1716 (2622)
+.+++.+++.+|++ +++.++|.++.+.+.+.....--. ....+....-|.+.. ++=..=.-.....--.-|+.+
T Consensus 586 ~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~--~d~e~~~~~~~~e~~-~~~~~e~~~I~Tsvl~eK~~A 662 (1075)
T KOG2171|consen 586 IAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE--EDEEEEQDLDGWEVV-ELGDKENIGIRTSVLDEKETA 662 (1075)
T ss_pred HHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--hhhhhccccccchhh-ccCCceeeeeeehhHHHHHHH
Confidence 99999999999988 567788888877654432200000 000000000000000 000000000111233557889
Q ss_pred HHHHHHhhhhhCcchhhhHHhHHHH-HHhhcCCCChHHHHHHHHHHHHHHHHhhh----------chhhhhHHHHhhccC
Q 000050 1717 LTLFKYLPRSLGVQFQNYLQQVLPA-ILDGLADENESVRDAALGAGHVLVEHYAT----------TSLPLLLPAVEDGIF 1785 (2622)
Q Consensus 1717 l~~l~~L~~~~g~~f~p~l~~ii~~-ll~~L~d~~~~VR~~al~al~~lv~~~~~----------~~i~~llp~l~~~l~ 1785 (2622)
+.+++.++..++..|.||+.++++. +....-+.++.||.+|..++..++...-. ..+..+.|.+.+.+.
T Consensus 663 ~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~ 742 (1075)
T KOG2171|consen 663 CEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALE 742 (1075)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999993 44444577889999999999988765422 133457777777777
Q ss_pred CCchH-HHHHHHHHHHHHHHHhcCCcccccccCCCCCCccc-HHHHHHHHHHHhCh------h-hHHHHHHHHHHhccCC
Q 000050 1786 NDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS-TEAHGRAIIEVLGR------D-KRNEVLAALYMVRSDV 1856 (2622)
Q Consensus 1786 d~~~r-vR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~-~~~~~~~l~~~Lg~------e-~~~~il~~L~~~~~D~ 1856 (2622)
++... +-.+.++.++..+..++...- .++.... .......+...... + .-.+.-..-.....+.
T Consensus 743 ~E~e~~vl~~vl~~f~~~i~~~G~~~L-------~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~ 815 (1075)
T KOG2171|consen 743 EEPETEVLSEILESFAECIEVMGDNCL-------NEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQ 815 (1075)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCcccC-------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhh
Confidence 76655 555666777777666543210 0000000 00000000000000 0 0000000000001133
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcC
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLK 1933 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~ 1933 (2622)
....-..+.+++..++...+..|.+.+..+.|.+++.+.+.....|.+|..+++++++.+|+. +.+.++|.+...+.
T Consensus 816 d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~ 895 (1075)
T KOG2171|consen 816 DAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQ 895 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcC
Confidence 445667778889999999999999999999999999999877767999999999999999876 46789999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHhCh-hhhhhhHH
Q 000050 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI------LEVRESAGLAFSTLFKSAGM-QAIDEIVP 2006 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d------~~VR~~A~~al~~l~~~~g~-~~~~~ilp 2006 (2622)
|++|+||+++.+++|.+.. ++++...+.....+|.+...+..++ ...+++|+.|+++++.+... ...++++|
T Consensus 896 d~~pEVRqaAsYGiGvlaq-~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~ 974 (1075)
T KOG2171|consen 896 DSDPEVRQAAAYGMGVLAQ-FGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLP 974 (1075)
T ss_pred CCCHHHHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHH
Confidence 9999999999999998755 4556677777778888877776543 34678899999999776543 34899999
Q ss_pred HHHHhccc---CCchhHHHHHHHHHHhh
Q 000050 2007 TLLHALED---DQTSDTALDGLKQILSV 2031 (2622)
Q Consensus 2007 ~Ll~~L~~---~~~~~~aL~~L~~il~~ 2031 (2622)
.|+.+|-- .++.....+.|..++..
T Consensus 975 ~~l~~LPl~~D~eEa~~iy~~l~~L~e~ 1002 (1075)
T KOG2171|consen 975 AWLSWLPLKEDKEEAVPIYTFLSDLYES 1002 (1075)
T ss_pred HHHHhCCCccchhhhhhHHHHHHHHHHh
Confidence 99999943 33344556666666644
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=430.34 Aligned_cols=863 Identities=18% Similarity=0.225 Sum_probs=616.2
Q ss_pred hHhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh----
Q 000050 1132 YSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2622)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~---- 1207 (2622)
+..|+..|.++|..+|+.|.+++......-| ..+ .+..+... ..+-++|..++.-++.++..
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~l~-~L~~i~~~------------~~~p~~Rq~aaVl~Rkl~~~~w~~ 71 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP-LLP-ALAHILAT------------SADPQVRQLAAVLLRKLLTKHWSR 71 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc-hHH-HHHHHHhc------------CCChHHHHHHHHHHHHHHHHHhhc
Confidence 4678899999999999999999976654443 222 22222211 22347999999999888763
Q ss_pred hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHH
Q 000050 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 1287 (2622)
Q Consensus 1208 ~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~l 1287 (2622)
+..+....+..-++.....++.+.||.+..+++.++.+....+.|+++++.+.++.+.++ ...|+.++..+..+
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~------~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPN------PSLRESALLILSSL 145 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC------cchhHHHHHHHHhh
Confidence 233333456666655556789999999999999999998877799999999999988643 45789999888888
Q ss_pred hhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc------chHHHHHHHHHHHhcC---CChHHHHH
Q 000050 1288 AKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD------EAPTLVSRLLDQLMKS---DKYGERRG 1357 (2622)
Q Consensus 1288 a~~l~~~-~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~------~~~~~i~~Ll~~L~~~---~~~~~r~~ 1357 (2622)
...+... .+++..+...+.+++.|++..||..++++++.++..... .+..++|.++..+... +|...-..
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~ 225 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS 225 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence 8776554 468899999999999999888999999999999877741 2356777777766543 23333455
Q ss_pred HHHHHHHHHhhhCccchhh--hcHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHcCC
Q 000050 1358 AAFGLAGVVKGFGISSLKK--YGIAATLREGLADRN-SAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFSD 1431 (2622)
Q Consensus 1358 Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~l~~~~-~~~~R~~al~al~~La~~~~---~~~~~~v~~ilp~ll~~l~D 1431 (2622)
+..+|..++...+ +.++. ..++.+..+...++. +...|+.|+..+..+++..+ +...+|...++|.++..+.|
T Consensus 226 ~l~~l~El~e~~p-k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte 304 (1075)
T KOG2171|consen 226 ALEALIELLESEP-KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTE 304 (1075)
T ss_pred HHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCC
Confidence 5556666665433 22211 156666666666543 78899999999999999855 55667888999999998764
Q ss_pred CCH----------------HHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1432 QVV----------------AVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1432 ~~~----------------~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
... .-...|..+++.++.++++..+ ..+++.+-..+.+.+|+.|++++.+|+.+++++++++.
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 311 2455678899999999987754 67777777889999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhh
Q 000050 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2622)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2622)
..+++|++.+++.++|+||+||.+|+.|+|+++..+. |+++. ...
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk----------------------------------~~~ 429 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQK----------------------------------KHH 429 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHH----------------------------------HHH
Confidence 9999999999999999999999999999999998775 22211 011
Q ss_pred hhHHHHHHhhhcCC-CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000050 1575 ALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~-~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
..+.|.+...+++. ++++..+|+.++.++.... ..+.+.||++.+|. .+..+++.+.+.||+.+..+||+++...++
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 22334444444443 5688899999998887753 33578999999999 667777788999999999999999999997
Q ss_pred C---CchhhHHHHHHHhhhcCC---hHHHHHHHHHHHHHHHHhchhHHHh----HhHHHHHh---ccCCChhhHHHHHHH
Q 000050 1653 E---NFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAALGTVYFEH----ILPDIIRN---CSHQRASVRDGYLTL 1719 (2622)
Q Consensus 1653 ~---~~~~ll~~Ll~~L~~~~~---~~~r~~a~~~L~~i~~~~g~~~l~~----llp~l~~~---l~~~~~~vR~~al~~ 1719 (2622)
. |++.++|.|.+.|++... ...|.....+++-+..++|++.+.+ ++..+... ..+.++..|...+..
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~ 588 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAF 588 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHH
Confidence 6 889999999999986542 2345567889999999999887644 44444444 234577889999999
Q ss_pred HHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHH
Q 000050 1720 FKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2622)
Q Consensus 1720 l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll 1799 (2622)
++.+|+.+|++|.||++.++|++++...-..+..- ...+ ...+.-.+++|....
T Consensus 589 warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~-------------~d~~-------d~e~~~~~~~~e~~~------ 642 (1075)
T KOG2171|consen 589 WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL-------------SDEE-------DEEEEQDLDGWEVVE------ 642 (1075)
T ss_pred HHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-------------cCch-------hhhhccccccchhhc------
Confidence 99999999999999999999999987653321100 0000 000000111221100
Q ss_pred HHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhH
Q 000050 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2622)
Q Consensus 1800 ~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l 1879 (2622)
..+++.. | ..-....-+..|+..|+.++......|
T Consensus 643 ------------------~~~~e~~-------------~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~~F 677 (1075)
T KOG2171|consen 643 ------------------LGDKENI-------------G--------------IRTSVLDEKETACEALGEYAKELKEAF 677 (1075)
T ss_pred ------------------cCCceee-------------e--------------eeehhHHHHHHHHHHHHHHHHhhhhhh
Confidence 0000000 0 011122346788999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhc------cc----hhhhHHHHHhhhcC-CCChhhHHhHHHHH
Q 000050 1880 KEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLG------ER----VLPSIIPILSRGLK-DPSASRRQGVCIGL 1947 (2622)
Q Consensus 1880 ~~~l~~ll~~L~~~-L~s~~~~~R~~A~~~L~~lv~~~~------~~----~l~~llp~L~~~L~-d~~~~vR~~a~~~L 1947 (2622)
.+|+...+...+.. .-..+..+|.+|+.++..+++..- +. .+..+.|.+...+. .+++++-.....++
T Consensus 678 ~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f 757 (1075)
T KOG2171|consen 678 APYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESF 757 (1075)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 99999988843333 346788999999999998886542 21 34566677776666 46788888889999
Q ss_pred HHHHHhhChhhH-HHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhh---HHHHHHhcccCCchhHHHH
Q 000050 1948 SEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI---VPTLLHALEDDQTSDTALD 2023 (2622)
Q Consensus 1948 ~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~i---lp~Ll~~L~~~~~~~~aL~ 2023 (2622)
++.++.+|+..+ .++...+...+...+.+...+.+. ......-++. -...+. +.....++
T Consensus 758 ~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~-----------r~~~~~eed~d~~eee~~~-----e~d~~ll~ 821 (1075)
T KOG2171|consen 758 AECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQD-----------RQEEDDEEDDDIEEEEDLD-----EQDAYLLD 821 (1075)
T ss_pred HHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhhhhhhhhhHHHHHHh-----hhhHHHHH
Confidence 999888875443 223333333333222111111110 0000000000 000000 00011111
Q ss_pred HHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhh
Q 000050 2024 GLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTL 2103 (2622)
Q Consensus 2024 ~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~ 2103 (2622)
.....+.+++...+..+.|++..+.|.++..+.+..+..|..+..+++.++.
T Consensus 822 ----------------------------~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie 873 (1075)
T KOG2171|consen 822 ----------------------------AISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIE 873 (1075)
T ss_pred ----------------------------HHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 1234567777888999999999999999999977776559999999999998
Q ss_pred ccCh---hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCC
Q 000050 2104 VIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166 (2622)
Q Consensus 2104 ~~~~---~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d 2166 (2622)
.+++ .....+++.++..+.|.+|+||++|.+.+|.+++..+.+|.+.+...++.|...++.++
T Consensus 874 ~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ 939 (1075)
T KOG2171|consen 874 GCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPL 939 (1075)
T ss_pred hcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChh
Confidence 8765 45889999999999999999999999999999999998888877777777777776443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=366.57 Aligned_cols=1067 Identities=18% Similarity=0.218 Sum_probs=719.3
Q ss_pred CcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc-hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccc
Q 000050 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2622)
Q Consensus 1295 ~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~-~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~ 1373 (2622)
+...+.++..+++.|+|.+.|||..|.+|+++++.++++. ...+++.++..+...+ .+.|..++.+|..++..+++..
T Consensus 42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~k-eq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGK-EQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccch-hhhccHHHHHHHHHHhcCCCcc
Confidence 3445678899999999999999999999999999888764 5778888888877655 4789999999999998887622
Q ss_pred hh------hhcHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000050 1374 LK------KYGIAATLREGLADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2622)
Q Consensus 1374 l~------~~~i~~~L~~~l~~~~-~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2622)
-. ...+.+.+.+++.... ....+-.++..++.+...+|..+.++...++..++..++.+...||+.|..+++.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 11 1256677777765432 3446777788888888888888888888899999999999999999999999999
Q ss_pred HHHhhcHHhHHhhHHHHHhhccCC-ChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhh---cCCCHHHHHHHHHH
Q 000050 1447 MMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTA 1522 (2622)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L---~D~~~~VR~aA~~a 1522 (2622)
++...+.+.+..++..++++|... +...-+..+.+|++++..+...+..+++.++|.+.+.+ +..+.+.|+.+.++
T Consensus 201 la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 201 LASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 999999999999999999999864 44556678899999999999999999999999999999 66788999999999
Q ss_pred HHHHhhhcCC---hhHHhHHHHHHhhc-CCCChhHH----HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHH
Q 000050 1523 LQQVGSVIKN---PEIASLVPTLLMGL-TDPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2622)
Q Consensus 1523 L~~l~~~~~~---~~i~~ilp~Ll~~l-~d~~~~~r----~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~ 1594 (2622)
++.|....+. |++..++..+++.+ .||+.... +--+.+-........+ .-..=+|.+|.||+
T Consensus 281 le~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~d----------eYsDDeD~SWkVRR 350 (1233)
T KOG1824|consen 281 LESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDD----------EYSDDEDMSWKVRR 350 (1233)
T ss_pred HHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcc----------ccccccchhHHHHH
Confidence 9999987763 44566666666665 47753211 0000000000000000 00011345899999
Q ss_pred HHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH--HhhhcCCh
Q 000050 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD--ALKSDNSN 1672 (2622)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~--~L~~~~~~ 1672 (2622)
+|+.++..+.. +..+-+..++..+-|.+...+.+....|+...+.++-.+....+. ..+++.+ ........
T Consensus 351 aAaKcl~a~Is--SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~-----~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 351 AAAKCLEAVIS--SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP-----VIEVLADNDAMEQGGTP 423 (1233)
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-----CcccccCchhhhccCCc
Confidence 99999998876 343456667888889999999999999999999999988876553 2222210 00000001
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCC--
Q 000050 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-- 1750 (2622)
Q Consensus 1673 ~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~-- 1750 (2622)
..+....+.. ..++..+-+.+.+.+...|.+++..+..+....++...+|++.++|.+...+.|..
T Consensus 424 s~~~~L~~~~------------~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 424 SDLSMLSDQV------------PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cchHHHHhhh------------HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 0111111111 22233333344455566899999999999999999999999999999999999865
Q ss_pred hHHHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccH
Q 000050 1751 ESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2622)
Q Consensus 1751 ~~VR~~al~al~~lv~~~~~~----~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~ 1826 (2622)
...+..++..+...+...+.+ .+..+.|.+.....|..+++-..++-..+.++..+.+......+ |...+
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~----d~~~~-- 565 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSF----DASPY-- 565 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccC----CCChh--
Confidence 356677777777776666655 34567788888889999999999999999998876544321111 11111
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000050 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906 (2622)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~ 1906 (2622)
+...+. -.++.+ ...|.+.+||+.|+.+++.++.+++..+...+|..++.++++++ ++-+|..|+
T Consensus 566 --v~~m~~---------~tl~rL--~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~Av 630 (1233)
T KOG1824|consen 566 --VKTMYD---------CTLQRL--KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAV 630 (1233)
T ss_pred --HHHHHH---------HHHHHH--hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHH
Confidence 111111 111111 24788999999999999999999998888999999999999996 567999999
Q ss_pred HHHHHHHHHhc----cchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHH
Q 000050 1907 RALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2622)
Q Consensus 1907 ~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2622)
+++..++...- ..++..++|.+...++......|.+...++..++...+...-...++.++..+...+.+.|-.+.
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99998875421 12466778888777776677889999999999988876544455567777777788888899999
Q ss_pred HHHHHHHHHHHHHhCh---hhhhhhHHHHHHhcccCCchhHHHHHHHHHHhh----hcccc-ccchhhhhhcCCCchHHH
Q 000050 1983 ESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILSV----RTTAV-LPHILPKLVHLPLSAFNA 2054 (2622)
Q Consensus 1983 ~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~----~~~~i-lp~Lip~L~~~~~~~~~~ 2054 (2622)
+.|...+..+...... ...+.+++.++..++++--.++++.++...+.. +.... .-.++..++.|-..
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~---- 786 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYE---- 786 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccc----
Confidence 9988888877554332 234677888888888887777766665543311 10000 11111111111000
Q ss_pred HHHHHHHHHhCCChhhhHhhhHHHHHHhcCC-CCHHHHHHHHHHHHHhhhccChhc---HHHHHHHHHhhcCCCChhHHH
Q 000050 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEG---VESLVSELLKGVGDNQASIRR 2130 (2622)
Q Consensus 2055 ~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~-~~~~vr~~a~~al~~l~~~~~~~~---l~~ll~~Ll~~l~d~~~~vR~ 2130 (2622)
...+ -+...-...+.|.+.+...+++.. ...++..+.. ...+..+|.
T Consensus 787 ---------------------------~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikv 837 (1233)
T KOG1824|consen 787 ---------------------------QVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKV 837 (1233)
T ss_pred ---------------------------ccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHH
Confidence 0000 001111223344455554554322 2333333333 234577888
Q ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhh
Q 000050 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210 (2622)
Q Consensus 2131 ~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~ 2210 (2622)
.|...+|.+.++...... +++-..++..|+.++++|+.+|..|||++....-..+
T Consensus 838 fa~LslGElgr~~~~s~~---~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~y---------------------- 892 (1233)
T KOG1824|consen 838 FALLSLGELGRRKDLSPQ---NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKY---------------------- 892 (1233)
T ss_pred HHHhhhhhhccCCCCCcc---hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhH----------------------
Confidence 999999999876443333 3455577889999999999999999999865332222
Q ss_pred hcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHH
Q 000050 2211 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKS 2290 (2622)
Q Consensus 2211 ~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~ 2290 (2622)
+|.+++.+.+. +.-+.--...+-+++...+..
T Consensus 893 --------------------Lpfil~qi~sq-pk~QyLLLhSlkevi~~~svd--------------------------- 924 (1233)
T KOG1824|consen 893 --------------------LPFILEQIESQ-PKRQYLLLHSLKEVIVSASVD--------------------------- 924 (1233)
T ss_pred --------------------HHHHHHHHhcc-hHhHHHHHHHHHHHHHHhccc---------------------------
Confidence 22222222211 111111122222222222211
Q ss_pred HHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHH
Q 000050 2291 AILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAIL 2370 (2622)
Q Consensus 2291 ~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l 2370 (2622)
.++|+++.+|..+.+......+..|+..++|||.|+...| +.++|.|-..+.++.+..|..++
T Consensus 925 ---------------~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--esLlpkL~~~~~S~a~~~rs~vv 987 (1233)
T KOG1824|consen 925 ---------------GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--ESLLPKLKLLLRSEASNTRSSVV 987 (1233)
T ss_pred ---------------hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--HHHHHHHHHHhcCCCcchhhhhh
Confidence 3456677777777777777778889999999999988665 67899998888888899999999
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcC-----------
Q 000050 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS----------- 2439 (2622)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~----------- 2439 (2622)
.|.+..+..-...+.+-..+.|-+++ ..++|++..||+.+..++...+++-|. -+..+++++++++.
T Consensus 988 savKfsisd~p~~id~~lk~~ig~fl-~~~~dpDl~VrrvaLvv~nSaahNKps-lIrDllpeLLp~Ly~eTkvrkelIr 1065 (1233)
T KOG1824|consen 988 SAVKFSISDQPQPIDPLLKQQIGDFL-KLLRDPDLEVRRVALVVLNSAAHNKPS-LIRDLLPELLPLLYSETKVRKELIR 1065 (1233)
T ss_pred heeeeeecCCCCccCHHHHHHHHHHH-HHHhCCchhHHHHHHHHHHHHHccCHh-HHHHHHHHHHHHHHHhhhhhHhhhh
Confidence 99999988777766444444444544 688999999999999999999999885 66667776665533
Q ss_pred -----------CCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCC
Q 000050 2440 -----------SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508 (2622)
Q Consensus 2440 -----------~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~ 2508 (2622)
++....|..++.++..++..+-+.+. ...+...+..++.|. -+++.-....+.++...|....
T Consensus 1066 eVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~d----it~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~V- 1139 (1233)
T KOG1824|consen 1066 EVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLD----ITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAV- 1139 (1233)
T ss_pred hhcccCccccccchHHHHHHHHHHHHHHHHhhhhhcc----HHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHH-
Confidence 23334455555566555544333321 123334444455544 5666666666666665553210
Q ss_pred CCchhhHhHHHHHHhhcC------------CCCHHHHHHHHHHHHHHHh
Q 000050 2509 ANTTVVVDILASVVSALH------------DDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2509 ~~~~~l~~~l~~l~~~l~------------d~s~dvr~~a~~~l~~~a~ 2545 (2622)
...++.++.++-.-+. ++..|.+|.|+.++.++-+
T Consensus 1140 --lqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1140 --LQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLT 1186 (1233)
T ss_pred --HHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhc
Confidence 0223444444433221 3445788888888888844
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=351.68 Aligned_cols=660 Identities=17% Similarity=0.224 Sum_probs=464.2
Q ss_pred HHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeee------------------cCCchHHHHHHHH
Q 000050 1058 EVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAV------------------HDPEKSVAEAAED 1119 (2622)
Q Consensus 1058 ~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~la~~ 1119 (2622)
++.++|..++|||.++|+.|+.+|.... ..++|.++..+.++.... +..+++...-...
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 5678888899999999999999998864 345555555555443322 1223333333457
Q ss_pred HHHhcCCCCCCCh-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000050 1120 IWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2622)
Q Consensus 1120 ~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2622)
.|-....+.++++ ..++..|.++.+..+..|++++|.++. +-| ..||+++..+.+.. .. ..+..+|++
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv----~~-----~~~~~~k~~ 149 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV----GE-----EQASMVKES 149 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc----cc-----ccchHHHHH
Confidence 8998777777777 677899999999999999999999863 222 24444444444321 11 122368999
Q ss_pred HHHHHHHhhhhhCCCCh----hHHHHHHHhhhc-CCCCHHHHHHHHHHHHHHHHHhcc----c-hhhhhHHH-HHHHhcC
Q 000050 1197 IALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDKHGR----D-NVSLLFPI-FENYLNK 1265 (2622)
Q Consensus 1197 ~~~al~~~~~~~~~~~~----~~i~~~li~~~l-~d~~~~VR~~a~~a~~~~i~~~g~----~-~~~~llp~-~~~~l~~ 1265 (2622)
+..++||+|+.+.++.. +.++..++.++. ..++..||.++++|+...++..+. + .++.+|.+ |+.+...
T Consensus 150 slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~ 229 (859)
T KOG1241|consen 150 SLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSP 229 (859)
T ss_pred HHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCC
Confidence 99999999999888754 346667765554 457899999999998766555442 2 35666665 5555442
Q ss_pred CCCChhhhhhhhhHHHHHHHHHhh-hhccCCcchHH-HHHHHHHHcCCCCHHHHHHHHhhhHhhHhh-------------
Q 000050 1266 KASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------------- 1330 (2622)
Q Consensus 1266 ~~~~~~~~~~vr~~~~~~~~~la~-~l~~~~~~v~~-i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~------------- 1330 (2622)
+.+++.+++.++..+.. |++.-.+++.. ++..-+..+++++++|...+.+.-+.+...
T Consensus 230 -------d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 230 -------DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788888888877763 33333455544 777778888888888876665543322210
Q ss_pred ----------hccchHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHH
Q 000050 1331 ----------MQDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK 1394 (2622)
Q Consensus 1331 ----------~~~~~~~~i~~Ll~~L~~~------~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~ 1394 (2622)
.....+.++|.|++.|.++ ++|...++|..||..+++..|+..+. ++++|+++.++++ ||+
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~p-dwr 379 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQNP-DWR 379 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCCc-chh
Confidence 0112347889999999874 37999999999999999999999987 8999999999998 899
Q ss_pred HHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-----HhhHHHHHhhcc
Q 000050 1395 RREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLE 1468 (2622)
Q Consensus 1395 ~R~~al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-----~~ilp~Ll~~L~ 1468 (2622)
.|++|.++||++.++.. ....|++.+.+|.++..+.|+...||+++..+++.+++.++.... ...++.++++|.
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 99999999999999866 668899999999999999999999999999999999887765432 334444455554
Q ss_pred CCChhhHHHHHHHHHHHHhhCchhh---------hhhhhhhHHHHhhhhc--C-CCHHHHHHHHHHHHHHhhhcCChhHH
Q 000050 1469 DKAWRTKQSSVQLLGAMAYCAPQQL---------SQCLPKIVPKLTEVLT--D-THPKVQSAGQTALQQVGSVIKNPEIA 1536 (2622)
Q Consensus 1469 ~~~w~~r~~a~~~L~~la~~~p~~l---------~~~L~~ivp~L~~~L~--D-~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2622)
+ ..++-..+|+++..+++.+++.. .++++.|+..|++..+ | .....|.+|..||+.+.+..++....
T Consensus 460 D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~ 538 (859)
T KOG1241|consen 460 D-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP 538 (859)
T ss_pred h-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 3 35666667777777776544321 1245555555555543 2 34567777777777777665432221
Q ss_pred ---hHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcc
Q 000050 1537 ---SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2622)
Q Consensus 1537 ---~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2622)
.+.+..+..+ ..++. .......+. +.-.+++...|..++.+.+.++. ++
T Consensus 539 ~v~~~~l~il~kl-------~q~i~----~~~l~~~dr---------------~q~~eLQs~Lc~~Lq~i~rk~~~--~~ 590 (859)
T KOG1241|consen 539 MVQKLTLVILEKL-------DQTIS----SQILSLADR---------------AQLNELQSLLCNTLQSIIRKVGS--DI 590 (859)
T ss_pred HHHHHHHHHHHHH-------HHHHH----HHhccHhhH---------------HHHHHHHHHHHHHHHHHHHHccc--cc
Confidence 1112211111 01111 000000000 01135566677778887777654 88
Q ss_pred cchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHh
Q 000050 1614 IPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2622)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d-~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~ 1689 (2622)
.++.+.+|..+.+.++. .+..+.+.|+-++++++..+|+. |++.+.|+|...|++.....+-..+..-+|.+++.+
T Consensus 591 ~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 591 REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999997 56678999999999999999976 789999999999977665544444444478999999
Q ss_pred chhHH---HhHhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcC---CC--C------hHH
Q 000050 1690 GTVYF---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA---DE--N------ESV 1753 (2622)
Q Consensus 1690 g~~~l---~~llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~---d~--~------~~V 1753 (2622)
+.+.. ++++..+++.++++ +..+|+..+++|++++...|.+|.||+..+++.+.+.-+ |. + +.+
T Consensus 671 ~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~L 750 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDEL 750 (859)
T ss_pred HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Confidence 98854 78899999999886 678999999999999999999999999999998877652 21 1 235
Q ss_pred HHHHHHHHHHHHHHh
Q 000050 1754 RDAALGAGHVLVEHY 1768 (2622)
Q Consensus 1754 R~~al~al~~lv~~~ 1768 (2622)
|++++++...++..+
T Consensus 751 Re~~leay~gi~qgl 765 (859)
T KOG1241|consen 751 REGILEAYTGIIQGL 765 (859)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666665555544433
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=373.15 Aligned_cols=318 Identities=26% Similarity=0.366 Sum_probs=246.7
Q ss_pred hHHHhHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhHhhcCCHHHHHHHHHHHHHHHHhccCcccHHHHHHHHhhccch
Q 000050 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2622)
Q Consensus 346 ~~~R~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2622)
||||+.+++||..++. . .++.+|+++++|++.||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred hH-HHHHHHHHHHHHHh---hchhhhhhhhhHHHHHHHHHHhhhccccc-----hhHHHHHHHHHHHhhhhhhhhhhhhH
Q 000050 426 EA-LRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2622)
Q Consensus 426 ~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~ 496 (2622)
++ +||+|+.++|.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++.... .+ ..+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~-~~-~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWK-LD-KIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcccc-ch-hhhh--hh
Confidence 84 99999999999999 55677888999999999999999999765 45555555521111 11 2222 34
Q ss_pred HHHHHhhhcCCCCc-chhhhhhc-CChhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000050 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2622)
Q Consensus 497 ~~~~~~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~vr~~a~~ 572 (2622)
..+|.++.++||+| +++|+|+| .++||.+|.+++++.++..+..+..++. ..+|+++|||++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47898888888885 56999999 6688888889999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-hHHHHHHHHHHhHhhhhhHhhccCCCCCCcccCCCCCCCCCHHHHHHHHHHhhccccc--c-----CC
Q 000050 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA--R-----GP 644 (2622)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~-----~~ 644 (2622)
.+++++.++|+ +...++.++++|+....... ...+.+....... .....+++ ....... . .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~~~~---~~s~~~~~~~~~~------~~v~~ai~-~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSETGD---KESSAENSSDKNL------SPVLSAIC-LAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhccccc---ccccccccccccc------ccchHHHH-hhhHhhhccccchhHHH
Confidence 99999999999 78889999999997653111 0000110111111 11222221 1111111 0 34
Q ss_pred ccchhhhhhccCCccccccccccchhhhHHhHHhhCCChHHHHhhcHH
Q 000050 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2622)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~~~~~~~dp~~lv~~~~~ 692 (2622)
+.++++|++||||.|.. +++|+++| +| +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~--~~-~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLC--QR-AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHH--HH-cCCCHHHHHHhcCC
Confidence 67899999999999975 37899995 33 99999999999963
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=293.91 Aligned_cols=751 Identities=17% Similarity=0.220 Sum_probs=510.9
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh----h
Q 000050 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV----L 1208 (2622)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~----~ 1208 (2622)
..|++.-.+|+..+|+.+-..+-..- .+||.-..+.-.|... + .++...|..+.+.|+.-... +
T Consensus 16 ~~lLk~s~Spn~~~~~~~~~~leq~~-~~pdfnnYL~~IL~~~-----~------~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 16 AQLLKNSQSPNSETRNNVQEKLEQFN-LFPDFNNYLIYILIRA-----K------SEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHhccCCChHHHHHHHHHHHHHh-cccchhceeeEEEecc-----c------ccchhHHHHhhhhHhccccccccCC
Confidence 34555556899999998887763332 3666443332222211 1 23456788888888765442 2
Q ss_pred CCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHh
Q 000050 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2622)
Q Consensus 1209 ~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la 1288 (2622)
+.+....+..-. .+++||.++.+|......+..++...|..+|++++|.+-++|...+. ...|+++-.+..+.
T Consensus 84 ~~~~~~yiKs~~-l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~------n~~EgA~~AL~KIc 156 (885)
T KOG2023|consen 84 PSEVLDYIKSEC-LHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDY------NTCEGAFGALQKIC 156 (885)
T ss_pred ChHHHHHHHHHH-HhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcc------cccchhHHHHHHHH
Confidence 332222222222 38899999999998888888888989999999999999999987543 33566655554444
Q ss_pred h----hhccC--CcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHh---cCCChHHHHHHH
Q 000050 1289 K----HLAKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM---KSDKYGERRGAA 1359 (2622)
Q Consensus 1289 ~----~l~~~--~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~---~~~~~~~r~~Aa 1359 (2622)
. .++.+ +..+..++++++++++++++.+|..+..|+..++.......-..++..++.++ +.++..+|+..+
T Consensus 157 EDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC 236 (885)
T KOG2023|consen 157 EDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVC 236 (885)
T ss_pred hhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 2 23222 34577889999999999999999999999998886655444344455555443 456779999999
Q ss_pred HHHHHHHhhhCccchh-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHcC--C---
Q 000050 1360 FGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFS--D--- 1431 (2622)
Q Consensus 1360 ~~L~~l~~~lg~~~l~-~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~--~~~~~~~~v~~ilp~ll~~l~--D--- 1431 (2622)
.++..+....+.+... -..+++++.+..++. |.++-..|+.....+++. +...+.||+.+++|.++..+. |
T Consensus 237 ~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 237 RALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred HHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH
Confidence 9999998876654332 126788888888877 566777788888888875 446788999999999988542 1
Q ss_pred ------C---------------------------------------------CHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000050 1432 ------Q---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2622)
Q Consensus 1432 ------~---------------------------------------------~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2622)
. +.+.|+..+.+++.++..++.+....++
T Consensus 316 ~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~ 395 (885)
T KOG2023|consen 316 ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILL 395 (885)
T ss_pred HHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHH
Confidence 0 0357888888999999888888889999
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC----hhHH
Q 000050 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIA 1536 (2622)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~ 1536 (2622)
|.+-+.|.+++|.+|.+++.++|+||+++-+.+.++||.++|.++.+|.|..+-||...||+|.+++..+-+ .++.
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~ 475 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK 475 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988753 3567
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHhccccccCCh---hhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcc
Q 000050 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA---PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2622)
Q Consensus 1537 ~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~---~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2622)
+++..|++.+-|.+..+++|...-.. ++....+. |.+..++..+..++..-..+--....+++|.++..+|..-.-
T Consensus 476 pvL~~ll~~llD~NK~VQEAAcsAfA-tleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~ 554 (885)
T KOG2023|consen 476 PVLEGLLRRLLDSNKKVQEAACSAFA-TLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK 554 (885)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc
Confidence 88888888889999999865432211 12222221 455555555555553211111123456778888777654333
Q ss_pred cchHhhhHHHHHHH---hcCCCHHHHHHHHHHHHHHHhhhCCCCch---hhHHHHHHHhh--------hcC-Ch---HHH
Q 000050 1614 IPYIGLLLPEVKKV---LVDPIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALK--------SDN-SN---VER 1675 (2622)
Q Consensus 1614 ~~~l~~ll~~L~~~---L~d~~~~vR~~a~~aL~~L~~~~g~~~~~---~ll~~Ll~~L~--------~~~-~~---~~r 1675 (2622)
..|++.+||.|.+. +.|.++++ ---.+|+++++.++|..+.+ .+....+..++ ... +. .+|
T Consensus 555 ~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdk 633 (885)
T KOG2023|consen 555 PAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDK 633 (885)
T ss_pred HHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCc
Confidence 56888899998875 44666554 35689999999999987433 33322222222 111 00 111
Q ss_pred H---HHHHHHHHHHHHhchhH--H---HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcC
Q 000050 1676 S---GAAQGLSEVLAALGTVY--F---EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1676 ~---~a~~~L~~i~~~~g~~~--l---~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2622)
- .+..-++.+++++|... + ..++..+.+.+.+.-++||++++.+++.+...+.+...|++..++|.+...+.
T Consensus 634 dfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 634 DFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLN 713 (885)
T ss_pred ceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCC
Confidence 1 23344667777776542 1 45777788889999999999999999999999999999999999999987777
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHH
Q 000050 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2622)
Q Consensus 1748 d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~ 1827 (2622)
-++-.+-..|..|++.+...++.+.-.. ++
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~-----------------------v~--------------------------- 743 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQY-----------------------VS--------------------------- 743 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhH-----------------------HH---------------------------
Confidence 6666777777777777655544331100 00
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC-CCHHHHHH
Q 000050 1828 AHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQV 1904 (2622)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~il~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s-~~~~~R~~ 1904 (2622)
.++..++.. ...+...+-+...-++|.+....|..+.++++.++..-+..++. .+.+.+..
T Consensus 744 ----------------~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~s 807 (885)
T KOG2023|consen 744 ----------------PVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKES 807 (885)
T ss_pred ----------------HHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHH
Confidence 111111111 12223344555566788888888999999999998887777764 45567888
Q ss_pred HHHHHHHHHHHhccchhhhHHHHHh--hhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHH
Q 000050 1905 AGRALGELVRKLGERVLPSIIPILS--RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2622)
Q Consensus 1905 A~~~L~~lv~~~~~~~l~~llp~L~--~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2622)
|.+.+..++...+..+...+.-+.. ....++..+.|......|-..-...|...+..+..++-|.+.
T Consensus 808 AFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~ 876 (885)
T KOG2023|consen 808 AFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQFPPPLK 876 (885)
T ss_pred HHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCChhHH
Confidence 9999999887665554333222211 223345556666655555444444444444444444444333
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-28 Score=290.12 Aligned_cols=768 Identities=19% Similarity=0.211 Sum_probs=521.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccc---cccCChhhhhhHHHHHHhh
Q 000050 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~---~~~~~~~~l~~i~p~L~~~ 1584 (2622)
...+++.+|+++.+.+.++-. -|++..++-.++......+..+|.+...+.+... ........+..+-..+.++
T Consensus 22 s~Spn~~~~~~~~~~leq~~~---~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~ 98 (885)
T KOG2023|consen 22 SQSPNSETRNNVQEKLEQFNL---FPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHG 98 (885)
T ss_pred ccCCChHHHHHHHHHHHHHhc---ccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhh
Confidence 345789999999999998865 2444433333333333444556654444444211 1123345666677778889
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC--------CCch
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE--------ENFP 1656 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~--------~~~~ 1656 (2622)
+.|.++-+|...--++..+++. .-....+.++|.|.++|..++....+.|+.||..+.+-..+ ..+.
T Consensus 99 lgd~~~lIr~tvGivITTI~s~-----~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~ 173 (885)
T KOG2023|consen 99 LGDASPLIRATVGIVITTIAST-----GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN 173 (885)
T ss_pred ccCchHHHHhhhhheeeeeecc-----cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH
Confidence 9999988887665555555442 12335689999999999999999999999999999874332 2456
Q ss_pred hhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhh
Q 000050 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p 1733 (2622)
-++|.+++..+.. +...|..+..++..++...... .++.++..+....++.+++||...+.+|..+-...++.+.|
T Consensus 174 ~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p 252 (885)
T KOG2023|consen 174 IMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP 252 (885)
T ss_pred HhHHHHHHHHhCC-ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence 7889998888766 5668998888887765543333 35778888899999999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHH--HHh
Q 000050 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL--FKV 1806 (2622)
Q Consensus 1734 ~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~-----~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll--~~~ 1806 (2622)
|+..++..++....|.+++|...|.+.+..+.+.- -...++.++|-+.+++.-.+..+ -+++.-- ..+
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~-----~LL~~~eeD~~v 327 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI-----ILLKNNEEDESV 327 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH-----HHhcCccccccC
Confidence 99999999999999999998877777776665431 12256778888887763211110 0111000 000
Q ss_pred cC-------Cc--ccc----cc--cCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000050 1807 AG-------TS--GKA----LL--EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871 (2622)
Q Consensus 1807 ~~-------~~--~~~----~~--~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l 1871 (2622)
++ .. ++. .. ++++|||+++. ...+..|+.|++++.++..+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD-------------------------dD~~~dWNLRkCSAAaLDVL 382 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD-------------------------DDAFSDWNLRKCSAAALDVL 382 (885)
T ss_pred CchhhhccchhhhchhccCcccccccccccccccc-------------------------ccccccccHhhccHHHHHHH
Confidence 00 00 000 00 00000110000 01235689999998888888
Q ss_pred HhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHH
Q 000050 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLS 1948 (2622)
Q Consensus 1872 ~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~ 1948 (2622)
+...+. +.++.++|.+.+.|.+.+|.+|..++-++|.+++.+-.. .+|.++|.+.+.+.|+.+-||.-+|++|+
T Consensus 383 anvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs 459 (885)
T KOG2023|consen 383 ANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS 459 (885)
T ss_pred HHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHh
Confidence 877765 678999999999999999999999999999999987554 47889999999999999999999999998
Q ss_pred HHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHH
Q 000050 1949 EVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028 (2622)
Q Consensus 1949 ~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~i 2028 (2622)
........+.-..|+..++..+++.+-|.+..|+++|+.+|+.+-+..|. +++|++-..| +.|.-.
T Consensus 460 Rys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~----eLVp~l~~IL----------~~l~~a 525 (885)
T KOG2023|consen 460 RYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE----ELVPYLEYIL----------DQLVFA 525 (885)
T ss_pred hhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc----hhHHHHHHHH----------HHHHHH
Confidence 76544333334467777888888888899999999999999999887775 3444432222 122112
Q ss_pred HhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChh--hhHhhhHHHHHHh---cCCCCHHHHHHHHHHHHHhhh
Q 000050 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN--FHLGTILPALLSA---MGDDDMDVQSLAKEAAETVTL 2103 (2622)
Q Consensus 2029 l~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~--~~l~~il~~Ll~~---l~~~~~~vr~~a~~al~~l~~ 2103 (2622)
++.+-...+- .--.|+|.+|...|+++. .|+.-++|+|++. +.++|+++= -..+|+..+..
T Consensus 526 f~kYQ~KNLl-------------ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~ 591 (885)
T KOG2023|consen 526 FGKYQKKNLL-------------ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIAS 591 (885)
T ss_pred HHHHhhccee-------------hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHH
Confidence 2111111110 124688999999998876 5789999999986 466665542 24556666665
Q ss_pred ccCh-------hcHHHHHHHHH-------hhcCC-----CChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHh
Q 000050 2104 VIDE-------EGVESLVSELL-------KGVGD-----NQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLL 2162 (2622)
Q Consensus 2104 ~~~~-------~~l~~ll~~Ll-------~~l~d-----~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l 2162 (2622)
+.+. +..+..+..+. ..-.+ ++...-..++..+..+++..+....+.+ .+++..++.++
T Consensus 592 AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~ 671 (885)
T KOG2023|consen 592 ALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL 671 (885)
T ss_pred HHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHh
Confidence 4432 22233332222 11111 2233334677788888777665444332 45788889999
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCC
Q 000050 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS 2242 (2622)
Q Consensus 2163 ~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~ 2242 (2622)
.|.-++||+.++.-|+.+++.+.....| .+..++|++...+....
T Consensus 672 ~D~~peVRQS~FALLGDltk~c~~~v~p-----------------------------------~~~~fl~~lg~Nl~~~~ 716 (885)
T KOG2023|consen 672 QDEVPEVRQSAFALLGDLTKACFEHVIP-----------------------------------NLADFLPILGANLNPEN 716 (885)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHhccc-----------------------------------hHHHHHHHHhhcCChhh
Confidence 9999999999999999998876432221 23345555555554445
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC-CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000050 2243 AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2622)
Q Consensus 2243 ~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~ 2321 (2622)
-.+-.+|+.++|.++...| ...++|+..++..|+-+++.. .+..+.....-++|.++...|..+.|++++.++.-...
T Consensus 717 isv~nNA~WAiGeia~k~g-~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~s 795 (885)
T KOG2023|consen 717 ISVCNNAIWAIGEIALKMG-LKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTS 795 (885)
T ss_pred chHHHHHHHHHHHHHHHhc-hhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHH
Confidence 5667789999999999998 788999999999999988754 34457777888999999999999999999998887777
Q ss_pred hCCC-CHHHHHHHHHHHHHHHhcccC-hhhHHHHHH---HhhhcCCHhHHHHHHHHHHHHHhhcC
Q 000050 2322 LQDS-TRTVRSSAALALGKLSALSTR-VDPLVGDLL---SSLQVSDAGIREAILTALKGVLKHAG 2381 (2622)
Q Consensus 2322 L~d~-~~~vR~~Aa~aLg~L~~~~~~-~~~ll~~Ll---~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2622)
+.+- +.+-+..|...+-.++...|. +-.-+..++ ....++...+|....+-|...-...|
T Consensus 796 l~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg 860 (885)
T KOG2023|consen 796 LRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVG 860 (885)
T ss_pred hcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Confidence 7764 567788999999988776552 222233333 33333444555544444444333333
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-22 Score=279.25 Aligned_cols=1303 Identities=16% Similarity=0.144 Sum_probs=728.6
Q ss_pred hHhHHHHhcCCCHHHHHHHHHHHHHHHHhC------------CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH
Q 000050 1132 YSGLFKALSHSNYNVRLAAAEALATALDEY------------PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199 (2622)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~~------------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~ 1199 (2622)
++.|+..|.+.+...|+.+|.+|..+.... ++.++.++..+.+. + ..+--++..+..
T Consensus 101 IppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g------s-----k~d~~L~~~Av~ 169 (2102)
T PLN03200 101 IPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG------N-----KQDKVVEGLLTG 169 (2102)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC------c-----hhhHHHHHHHHH
Confidence 467888888889999999999999986432 22334444433310 0 001123444567
Q ss_pred HHHHhhhhhCCCCh----hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhcc--ch--hhhhHHHHHHHhcCCCCChh
Q 000050 1200 ALHSAADVLRTKDL----PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DN--VSLLFPIFENYLNKKASDEE 1271 (2622)
Q Consensus 1200 al~~~~~~~~~~~~----~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~--~~--~~~llp~~~~~l~~~~~~~~ 1271 (2622)
+|..++..-++... ...+..++ ..+.+.++.++..+..++......++. .. -...+|.|-+++...
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg----- 243 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG----- 243 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC-----
Confidence 78777764332110 01223332 455678888888887766555433221 11 134578888888642
Q ss_pred hhhhhhhHHHHHHHHHhhhhccCCcch--HHHHHHHHHHcCCCCHH---------HHHHHHhhhHhhHhhhccchHHHHH
Q 000050 1272 KYDLVREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVS 1340 (2622)
Q Consensus 1272 ~~~~vr~~~~~~~~~la~~l~~~~~~v--~~i~~~L~~~l~~~~~~---------Vq~~a~~~L~~lv~~~~~~~~~~i~ 1340 (2622)
.+..+|+.+.-.++.|+.+-......+ ...++.|++.+..|+.+ .|+.+..+|+.+.... ..+++
T Consensus 244 ~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~ 319 (2102)
T PLN03200 244 NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALIL 319 (2102)
T ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHH
Confidence 123678888888888885411100001 11356667777666543 4778888887776332 34555
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhCccc-----hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-c
Q 000050 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS-----LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-F 1414 (2622)
Q Consensus 1341 ~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~-----l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~-~ 1414 (2622)
.+-+.+....+...--.+..+++.+........ +....+.+.|.+++++++.....+.+..++..+ +|.. +
T Consensus 320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl---~gN~~l 396 (2102)
T PLN03200 320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL---YGNAYL 396 (2102)
T ss_pred HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh---cCChHH
Confidence 555544333343333345566666654332211 222345678888998874333455555555332 2221 1
Q ss_pred hhH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhh
Q 000050 1415 EPY--VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2622)
Q Consensus 1415 ~~~--v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~ 1488 (2622)
... -.+..+.++..+...+.+++..+..++..+...-.... -...+|.|++.|.+++-..+..++..++.++..
T Consensus 397 ~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ 476 (2102)
T PLN03200 397 SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE 476 (2102)
T ss_pred HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 111 12567778888888888999999999988875433221 145789999999998888999999999999876
Q ss_pred Cchhhh-hhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-h-hH--HhHHHHHHhhcCCCChhHH-HHHHHHHh
Q 000050 1489 APQQLS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQ 1562 (2622)
Q Consensus 1489 ~p~~l~-~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~i--~~ilp~Ll~~l~d~~~~~r-~al~~L~~ 1562 (2622)
.+++.. -.-...+|.|.++|..++..+|+.|+++|++++..-.+ . .+ ...+|.|++.+.+.+...+ .++.++..
T Consensus 477 ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~n 556 (2102)
T PLN03200 477 VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTK 556 (2102)
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 554321 11246889999999999999999999999999874221 1 12 2578889999988776666 56666544
Q ss_pred ccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCccc-ch--HhhhHHHHHHHhcCCCHHHHHHH
Q 000050 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PY--IGLLLPEVKKVLVDPIPEVRSVA 1639 (2622)
Q Consensus 1563 ~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~-~~--l~~ll~~L~~~L~d~~~~vR~~a 1639 (2622)
. ...-+. ..++.+...+...++.++..+...++++...... ++.. .. -...++.|.+++.++++.+++.|
T Consensus 557 L--i~~~d~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~-~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~A 629 (2102)
T PLN03200 557 L--VRTADA----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASL-EDLVREGSAANDALRTLIQLLSSSKEETQEKA 629 (2102)
T ss_pred H--Hhccch----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcch-hHHHHHhhhccccHHHHHHHHcCCCHHHHHHH
Confidence 2 111121 2345566777777889999999999998775432 2211 10 13578999999999999999999
Q ss_pred HHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH---H--HhHhHHHHHhccCCCh
Q 000050 1640 ARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRA 1710 (2622)
Q Consensus 1640 ~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~---l--~~llp~l~~~l~~~~~ 1710 (2622)
+.+|..++..-.+. .....+|.++..|.+.. ..++..++.+|+.+......+. + ...+|.+++.+.+.+.
T Consensus 630 a~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~ 708 (2102)
T PLN03200 630 ASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSI 708 (2102)
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCCh
Confidence 99999998743321 24567888888887655 4578899999999886433221 1 3578899999999999
Q ss_pred hhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhch-h------hhhHHHHhhc
Q 000050 1711 SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDG 1783 (2622)
Q Consensus 1711 ~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~-i------~~llp~l~~~ 1783 (2622)
.+++.++.++..++..-...-.-.-...++++...+....+.+|+.|..++..++...+... + ...+..+.+.
T Consensus 709 ~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~ 788 (2102)
T PLN03200 709 EVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDL 788 (2102)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHH
Confidence 99999999999998754321111123578999999999999999999999999887665332 1 1244555555
Q ss_pred cCCCchHHHH--HHHHHHHHHHHHhcCCc-ccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHH
Q 000050 1784 IFNDNWRIRQ--SSVELLGDLLFKVAGTS-GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV 1860 (2622)
Q Consensus 1784 l~d~~~rvR~--~a~~ll~~ll~~~~~~~-~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~V 1860 (2622)
+...+-+... .+++.+..+...-.+.. .+. .+..+.+.-+ -+..+..|+.+.++.+
T Consensus 789 L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~---------------~~~~~~e~p~------~l~~l~~~l~~~~p~~ 847 (2102)
T PLN03200 789 LNSTDLDSSATSEALEALALLARTKGGANFSHP---------------PWAVLAEVPS------SLEPLVRCLAEGHPLV 847 (2102)
T ss_pred HhcCCcchhhHHHHHHHHHHHHhhcccCCCCCC---------------chhhHHhccC------chHHHHHHHHcCChHH
Confidence 5555544333 36777776654311110 000 0111222111 1233444557788889
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHH---HHHHHHHHH-hcCCCHHHHHH---------------HHHHHH-----------
Q 000050 1861 RQAALHVWKTIVANTPKTLKEIMP---VLMNTLISS-LASSSSERRQV---------------AGRALG----------- 1910 (2622)
Q Consensus 1861 R~aA~~~l~~l~~~~p~~l~~~l~---~ll~~L~~~-L~s~~~~~R~~---------------A~~~L~----------- 1910 (2622)
.+.|++++..++...|.-+..++. ..+..+..+ +++++.++|.. ...++.
T Consensus 848 ~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (2102)
T PLN03200 848 QDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQA 927 (2102)
T ss_pred HHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 999999999998877755544432 222222222 23444444321 111111
Q ss_pred --HHHHHhcc------ch---------------------------hhhHHHHHhhhcCCCChhhH-----HhHHHHHHHH
Q 000050 1911 --ELVRKLGE------RV---------------------------LPSIIPILSRGLKDPSASRR-----QGVCIGLSEV 1950 (2622)
Q Consensus 1911 --~lv~~~~~------~~---------------------------l~~llp~L~~~L~d~~~~vR-----~~a~~~L~~l 1950 (2622)
++.+.-.. .+ -+.+-=+|...+.+.++..| .++..+|.+=
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~ 1007 (2102)
T PLN03200 928 LVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEK 1007 (2102)
T ss_pred HHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHH
Confidence 11110000 00 00000011111111111111 1122222221
Q ss_pred HHhhC---hhhHHHhHHhHHHH-HHHHh-cCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCc--hhHHHH
Q 000050 1951 MASAG---KSQLLSFMDELIPT-IRTAL-CDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALD 2023 (2622)
Q Consensus 1951 i~~~~---~~~l~~~l~~ll~~-l~~~L-~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~ 2023 (2622)
+..+. ....++--..-+.. +...| +|++-.--.++..++ |.|-..|++++. +..+.+
T Consensus 1008 ~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~q 1071 (2102)
T PLN03200 1008 LASYTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAI----------------PSLANLLKSEETIDRYFAAQ 1071 (2102)
T ss_pred HHhhccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHh----------------HHHHhhhhhHHHHHHHHHHH
Confidence 11110 00000001111111 33333 232211111222222 222222222221 112223
Q ss_pred HHHHHHhhhccc---------cccchhhhhhcCC---------------CchHHHHHHHHHHHHhCCChhhhHhhhHHHH
Q 000050 2024 GLKQILSVRTTA---------VLPHILPKLVHLP---------------LSAFNAHALGALAEVAGPGLNFHLGTILPAL 2079 (2622)
Q Consensus 2024 ~L~~il~~~~~~---------ilp~Lip~L~~~~---------------~~~~~~~aL~sLa~~~g~~l~~~l~~il~~L 2079 (2622)
++..++...++. ....++..+-... .+.....++..+.++-.-.....-.+.+|.|
T Consensus 1072 ~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~L 1151 (2102)
T PLN03200 1072 ALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLL 1151 (2102)
T ss_pred HHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 333222111110 1111111111000 0011233444443321111223346779999
Q ss_pred HHhcCCCC--HHHHHHHHHHHHHhhhccCh-------hc-HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccc
Q 000050 2080 LSAMGDDD--MDVQSLAKEAAETVTLVIDE-------EG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD 2149 (2622)
Q Consensus 2080 l~~l~~~~--~~vr~~a~~al~~l~~~~~~-------~~-l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~ 2149 (2622)
++.|+... +.+|..+...+..+....+. .+ ++.+.. ++....+ ......+..++..++.. .+...
T Consensus 1152 v~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~k-vLSl~~s--~s~e~a~~ElL~IL~~~--~e~~~ 1226 (2102)
T PLN03200 1152 VDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTK-YLSLGPQ--DSTEEAASELLRILFSS--PELRR 1226 (2102)
T ss_pred HHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH-HHHhcCc--cchhHHHHHHHHHHhCC--HHHHH
Confidence 99997554 46788888888777653221 12 222222 2222221 12234455555555521 12211
Q ss_pred --cHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2150 --EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2150 --~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
-....+..|+..+...+...|.+|..+|..++.... .+..+ .-
T Consensus 1227 ~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~----------~~~~~-------------------------~a 1271 (2102)
T PLN03200 1227 HESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEH----------IRDSE-------------------------LA 1271 (2102)
T ss_pred HhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh----------hhhhh-------------------------hh
Confidence 124567888888888888899999888888765311 00000 00
Q ss_pred hhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhh-hh-hhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCC
Q 000050 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS-LK-EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~-l~-p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2622)
...+|.|...+.++....+..++.+|-.+++.-.... .+ ..-...+..++++|.+..+.+.+..++..+..+......
T Consensus 1272 ~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~ 1351 (2102)
T PLN03200 1272 RQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRI 1351 (2102)
T ss_pred hccchHHHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHH
Confidence 1235566677777777888888888888886432111 11 011144566778888776667777777666533221111
Q ss_pred CccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc---------ccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHH
Q 000050 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL---------STRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376 (2622)
Q Consensus 2306 ~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~---------~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~v 2376 (2622)
..++---..+..++..+.|+...+...|..+|-.|... ++-..|++. .+-.......+.++.+|..+
T Consensus 1352 R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~----~ilrvS~~a~E~AV~aL~kl 1427 (2102)
T PLN03200 1352 RSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVG----LVVGTNYVLHEAAISALIKL 1427 (2102)
T ss_pred HhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHH----HHHcCCHHHHHHHHHHHHHH
Confidence 11121223455667777776677789999999988542 222333333 33223556678888888777
Q ss_pred HhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC----ch---HHHHHHHHHHhhcCCCCchhhHhH
Q 000050 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME----DG---QLADLLQELLNLASSPSWAARHGS 2449 (2622)
Q Consensus 2377 i~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~----~~---~~~~~l~~ll~~~~~~~~~~r~~~ 2449 (2622)
....+....+....-+++.+...++...+.++..+++.+.-+.-+-. .+ ...|++-.++. ....-| ..|++
T Consensus 1428 ~~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~a 1505 (2102)
T PLN03200 1428 GKDRPPCKLDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTR-PDLGTW-GQHSA 1505 (2102)
T ss_pred hCCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhc-cCccee-cHHHH
Confidence 63222212222333455555555555677888888888765543211 11 12344433332 222222 34445
Q ss_pred HHHHHHHHhhCCccccCCh-hHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCC
Q 000050 2450 VLVFATFLRHNPSAISMSP-LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD 2528 (2622)
Q Consensus 2450 ~~~L~~~l~~~~~~i~~~~-~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~ 2528 (2622)
..+|..++. .|...-... -...+++.|+..+.+.++.+++.|.++++.++....-++ +..-...++++++.+.+.
T Consensus 1506 l~~l~~i~e-~~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~---~~~~~~aI~pLv~~l~~~ 1581 (2102)
T PLN03200 1506 LQALVNILE-KPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQ---DITTQNAVVPLVRLAGIG 1581 (2102)
T ss_pred HHHHHHHHh-CcchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhh---hhhcccchHHHHHHhcCC
Confidence 556655543 343322111 134578888999999999999999999998877653221 123356899999999999
Q ss_pred CHHHHHHHHHHHHHHHhhCchhhhh
Q 000050 2529 SSEVRRRALSALKSVAKANPSAIMV 2553 (2622)
Q Consensus 2529 s~dvr~~a~~~l~~~a~~~~~~v~~ 2553 (2622)
+...|+.|+.+|......-|..|..
T Consensus 1582 ~~~~~~~A~~aL~~~~~~w~~~v~~ 1606 (2102)
T PLN03200 1582 ILSLQQRAVKALESISLSWPKAVAD 1606 (2102)
T ss_pred ChhHHHHHHHHHHHhhcccHHHHHH
Confidence 9999999999998777666555543
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-25 Score=286.58 Aligned_cols=614 Identities=18% Similarity=0.231 Sum_probs=448.5
Q ss_pred hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh-hhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~-~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
...+...+...+.+++|..|++.|.||-.++..++. ....-..++|...+...|.|.|+-+++.|.+.++-+++..+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 346677777888899999999999999999998873 3445567888899999999999999999999999998877777
Q ss_pred hhhhhHHHHHHhcccC---------C------------chhHHHHHHHHHHhhhccccccchhhhhhcCC-------Cch
Q 000050 2000 AIDEIVPTLLHALEDD---------Q------------TSDTALDGLKQILSVRTTAVLPHILPKLVHLP-------LSA 2051 (2622)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~---------~------------~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~-------~~~ 2051 (2622)
...+++..|++.|..+ + ..++.+..++++|+-.++...|.|+.++++-. ..-
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 7778888888877321 1 12568899999999999999999999998632 122
Q ss_pred HHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhc---cChhcHHHHHHHHHhhcCCCChhH
Q 000050 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQASI 2128 (2622)
Q Consensus 2052 ~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~---~~~~~l~~ll~~Ll~~l~d~~~~v 2128 (2622)
.++..++.|++-+|..+.||+++++|.|.++-.|++..++.++...|+.++.. +-+.++++++.+|+..+.+..|++
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 46788999999999999999999999999999999999999999999999763 234779999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhh
Q 000050 2129 RRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207 (2622)
Q Consensus 2129 R~~A~~~L~~l~~~~~-~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~ 2207 (2622)
|.++|.++..+.+..+ .++.+.++++|..+++.+||-.+.||++|-.+...+.+-+-+.. ...+
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~------------d~~~--- 1120 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC------------DVTN--- 1120 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------------ccCC---
Confidence 9999999999998765 45788999999999999999999999998877766654332110 0000
Q ss_pred hhhhcCCccccccCCCCcCchhhHHHHH-HHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCH
Q 000050 2208 RRKKKGGPILIPGFCLPKALQPLLPIFL-QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2622)
Q Consensus 2208 ~~~~~~~~~~l~g~~~~~~l~~ilp~ll-~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~ 2286 (2622)
|-...+.+..++|.++ +|+++..+++|..+..++.++++..| ..++||.+.+++-|++..++-++.
T Consensus 1121 ------------~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1121 ------------GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred ------------cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchH
Confidence 0000134566889887 68888899999999999999999998 799999999999999988775333
Q ss_pred hhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHH------HHHHHhc--ccChhhHHHHHHHhh
Q 000050 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALA------LGKLSAL--STRVDPLVGDLLSSL 2358 (2622)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~a------Lg~L~~~--~~~~~~ll~~Ll~~l 2358 (2622)
-.-..++.+.+.=.+. -++.|..+++. ++.++.+ ...+..++|.+.+.+
T Consensus 1188 vLnYls~r~~~~e~ea-----------------------lDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~ 1244 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEA-----------------------LDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELV 1244 (1702)
T ss_pred HHHHHHHhhhhhHHHH-----------------------HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2222233321111000 02333343332 2222221 123557788888888
Q ss_pred hcC-CHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhh
Q 000050 2359 QVS-DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2622)
Q Consensus 2359 ~~~-d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2622)
+.+ .-+.|.++...+.-++..+|..+ .||.++++..+...+.|+++.+|+..|.++|.|++.-.++...+++..++.+
T Consensus 1245 R~sVgl~Tkvg~A~fI~~L~~r~~~em-tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~ 1323 (1702)
T KOG0915|consen 1245 RGSVGLGTKVGCASFISLLVQRLGSEM-TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLAD 1323 (1702)
T ss_pred hccCCCCcchhHHHHHHHHHHHhcccc-CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 764 34567777788888888899888 6899999999999999999999999999999999999988999999988776
Q ss_pred cCCCCchhhH-hHHHHHHHHHhhCCcccc---------------------------------------CChhHHHHHHHH
Q 000050 2438 ASSPSWAARH-GSVLVFATFLRHNPSAIS---------------------------------------MSPLFLSILDRL 2477 (2622)
Q Consensus 2438 ~~~~~~~~r~-~~~~~L~~~l~~~~~~i~---------------------------------------~~~~~~~i~~~l 2477 (2622)
+..+....+. .+..+.+ +.+++++.+. .+-+..+++..+
T Consensus 1324 ~l~k~es~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~i 1402 (1702)
T KOG0915|consen 1324 LLGKDESLKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLI 1402 (1702)
T ss_pred HhccCCCccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHH
Confidence 5433332221 1222221 3322221110 011233344444
Q ss_pred Hhhh-ccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHh
Q 000050 2478 KSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 2556 (2622)
Q Consensus 2478 ~~~~-~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~ 2556 (2622)
|... .++.+-+|..++.++..+........|. .++......+..++++..++.+.--+.++......+.+.+....+
T Consensus 1403 ceni~nn~~w~lr~q~Akai~~~a~~~sss~~~--p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~ 1480 (1702)
T KOG0915|consen 1403 CENITNNESWKLRKQAAKAIRVIAEGLSSSAPI--PVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMS 1480 (1702)
T ss_pred HHHhccchHHHHHHHHHHHHHHHcccccccCCh--HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhch
Confidence 5444 4445788888988888776655443221 456777788888999999999999999999888777666655555
Q ss_pred hHHHHHHhhhcCCcchhhchhHHHHHHHhcccc
Q 000050 2557 LFGPALAECLKDGSTPVRLAAERCAVHAFQLTR 2589 (2622)
Q Consensus 2557 ~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~~~ 2589 (2622)
.+.-..+......+.-.|--+..+....++...
T Consensus 1481 si~~A~~~e~sr~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1481 SIEHAVMEEVSRREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHhhhh
Confidence 555555555554444444444444455554444
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-25 Score=270.82 Aligned_cols=728 Identities=16% Similarity=0.264 Sum_probs=485.9
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCCh--hHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc
Q 000050 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2622)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~--~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~ 1586 (2622)
-.+++.+|..|-.-|.++.. ..+..++..|-..+.|++. ..|.+... .|...+.
T Consensus 11 lSpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL--------------------~LKN~L~ 66 (859)
T KOG1241|consen 11 LSPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGL--------------------QLKNSLT 66 (859)
T ss_pred cCCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhH--------------------HHhhhhc
Confidence 35678899999988888764 3445555555555554432 23322111 1233445
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHH
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDA 1665 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~-~g~~~~~~ll~~Ll~~ 1665 (2622)
.++++.+....+-+-.+-. +.. ..+-..+...|..+.|..+..|+.|++.++.. ++...++++++.+...
T Consensus 67 akd~~~k~~~~qRWl~l~~------e~r---eqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n 137 (859)
T KOG1241|consen 67 AKDPERKQQYQQRWLQLPA------EIR---EQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN 137 (859)
T ss_pred cCCHHHHHHHHHHHHcCCH------HHH---HHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh
Confidence 5566666655554433221 112 23555667788889999999999999999984 3444789999988888
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHhchhHH----HhHhHHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHH--h
Q 000050 1666 LKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ--Q 1737 (2622)
Q Consensus 1666 L~~~~~~~~r~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~--~ 1737 (2622)
..++.+..++.++.+++|.++....++.+ ..++-.+++.... ++..+|-+++.++..--...+..|..-.+ .
T Consensus 138 v~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~ 217 (859)
T KOG1241|consen 138 VGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY 217 (859)
T ss_pred cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence 77776666888999999999999888755 4566677776654 57889988888877655555555543322 3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhch----hhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccc
Q 000050 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTS----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2622)
Q Consensus 1738 ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~----i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~ 1813 (2622)
++.........++..|+.+|+.++-.++..|-... .+.+++.....+++++..+...+++.-..+..
T Consensus 218 iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice--------- 288 (859)
T KOG1241|consen 218 IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE--------- 288 (859)
T ss_pred eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---------
Confidence 67777777778889999999999998887654331 12233333344444444444333333222210
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHH
Q 000050 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK----TLKEIMPVLMNT 1889 (2622)
Q Consensus 1814 ~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~----~l~~~l~~ll~~ 1889 (2622)
.. .+. +++.=...-.+.|. --+.-++.++|.
T Consensus 289 -----------------EE-iD~---------------------------~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~ 323 (859)
T KOG1241|consen 289 -----------------EE-IDL---------------------------AIEYGEAVDQGLPPSSKYFARQALQDVVPV 323 (859)
T ss_pred -----------------HH-HHH---------------------------HHHHHHHhhcCCCchhhHHHHHHHhHhhHH
Confidence 00 000 00000000001110 011223345555
Q ss_pred HHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh
Q 000050 1890 LISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2622)
Q Consensus 1890 L~~~L~-------s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~ 1962 (2622)
|++.|. +.+|..-..|..||.-+.+..|+.++|.++|++.+.++++++.-|..+..++|.++..-.+..+.+.
T Consensus 324 Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i 403 (859)
T KOG1241|consen 324 LLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI 403 (859)
T ss_pred HHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH
Confidence 555554 2457788899999999999999999999999999999999999999999999999987777888999
Q ss_pred HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh-----hhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccc
Q 000050 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037 (2622)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~-----~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~il 2037 (2622)
..+.+|.+...+.|+.--||+.++.+|+++.+....... ...++.+++.|.++.
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP--------------------- 462 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP--------------------- 462 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc---------------------
Confidence 999999999999999999999999999999877653222 222333333333321
Q ss_pred cchhhhhhcCCCchHHHHHHHHHHHHhC---------CChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChh
Q 000050 2038 PHILPKLVHLPLSAFNAHALGALAEVAG---------PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE 2108 (2622)
Q Consensus 2038 p~Lip~L~~~~~~~~~~~aL~sLa~~~g---------~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~ 2108 (2622)
.+......++-+|++.+. +...|++..|+..|+..-.-.+
T Consensus 463 ----------rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--------------------- 511 (859)
T KOG1241|consen 463 ----------RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--------------------- 511 (859)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc---------------------
Confidence 223334566666665321 1233455555555554431110
Q ss_pred cHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc---------CCC----hhHHHHHHH
Q 000050 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS---------DSD----STTVAAAWE 2175 (2622)
Q Consensus 2109 ~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~---------d~d----~~V~~~a~~ 2175 (2622)
-.+...|.+|..+|+.+.++++.+..+.+..+......-++ -.| .++...-+.
T Consensus 512 --------------gnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 512 --------------GNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred --------------cchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 12234555555555555555554444333332222222111 001 112222222
Q ss_pred HHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHcc-CCHHHHHHHHHHHH
Q 000050 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLG 2254 (2622)
Q Consensus 2176 aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~-~~~~~r~~aa~~L~ 2254 (2622)
.|..+.++.+. ..+.....++..|++.+.+ ++..+.+.|..+++
T Consensus 578 ~Lq~i~rk~~~-----------------------------------~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~ 622 (859)
T KOG1241|consen 578 TLQSIIRKVGS-----------------------------------DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVS 622 (859)
T ss_pred HHHHHHHHccc-----------------------------------cchhHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 33332222211 1223445577777777776 45667889999999
Q ss_pred HHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC--CHHHHHH
Q 000050 2255 ELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSS 2332 (2622)
Q Consensus 2255 ~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~ 2332 (2622)
.++...| ..|..|++.+.+.|.+.|+...+..|..++....|.+++.++..+.||...+.+.++++|+++ +++||-.
T Consensus 623 tl~~~Lg-~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~ 701 (859)
T KOG1241|consen 623 TLAESLG-KGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPA 701 (859)
T ss_pred HHHHHHh-HhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccch
Confidence 9999999 799999999999999999766678899999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHH-HhcccChhhHHHHHHHhhhcC-----C----------HhHHHHHHHHHHHHHhhcCCC----CChHHHHHH
Q 000050 2333 AALALGKL-SALSTRVDPLVGDLLSSLQVS-----D----------AGIREAILTALKGVLKHAGKS----VSSAVKIRV 2392 (2622)
Q Consensus 2333 Aa~aLg~L-~~~~~~~~~ll~~Ll~~l~~~-----d----------~~vr~~~l~AL~~vi~~~g~~----~~~~~~~~i 2392 (2622)
...++|.+ ..++.++++|+..++..++.. | .++|+++++|...+++..+.. ...++.+.|
T Consensus 702 IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 702 ILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHH
Confidence 99999999 456788999988877666421 1 578999999999999987732 235899999
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcCch
Q 000050 2393 YSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDG 2425 (2622)
Q Consensus 2393 ~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~ 2425 (2622)
+.++...-.++ ++.+...++..||.|+..+|..
T Consensus 782 ~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 782 ISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccc
Confidence 99998877665 4778889999999999999864
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-22 Score=277.93 Aligned_cols=1371 Identities=15% Similarity=0.116 Sum_probs=777.7
Q ss_pred HhHHHHhcCC--CHHHHHHHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000050 1133 SGLFKALSHS--NYNVRLAAAEALATALDEYP----------DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2622)
Q Consensus 1133 ~~Ll~~l~~~--~~~vR~~aa~~la~~~~~~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2622)
..+++.|.+. +...|+.+...|..+.+..+ +.++.++..|. ..+..+|.-++.+
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~--------------sg~~~vk~nAaaa 81 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR--------------SGTLGAKVNAAAV 81 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc--------------CCCHHHHHHHHHH
Confidence 4556666544 56677777777766665443 34444444442 1234567666667
Q ss_pred HHHhhhh-------hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhc-cch------hhhhHHHHHHHhcCC
Q 000050 1201 LHSAADV-------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDN------VSLLFPIFENYLNKK 1266 (2622)
Q Consensus 1201 l~~~~~~-------~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g-~~~------~~~llp~~~~~l~~~ 1266 (2622)
+..++.. .....++.++ ..+.+.+.+.|..+..++..+..... ++. ....+|.+...+...
T Consensus 82 L~nLS~~e~nk~~Iv~~GaIppLV-----~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 82 LGVLCKEEDLRVKVLLGGCIPPLL-----SLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred HHHHhcCHHHHHHHHHcCChHHHH-----HHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 7666543 1112223333 33455578899998888877644321 111 144567777777653
Q ss_pred CCChhhhhhhhhHHHHHHHHHhhhhccCCcc-h-HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccch-----HHHH
Q 000050 1267 ASDEEKYDLVREGVVIFTGALAKHLAKDDPK-V-HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLV 1339 (2622)
Q Consensus 1267 ~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~-v-~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~-----~~~i 1339 (2622)
.+ .+..+++.++..+..|+.+-+..... + ...++.++..++++++.+|..++.++..++....+.. ...+
T Consensus 157 sk---~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaV 233 (2102)
T PLN03200 157 NK---QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAV 233 (2102)
T ss_pred ch---hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCH
Confidence 22 22235566666666777543221111 1 1257889999999999999999887766553322111 2357
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--ccchhhhcHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHH
Q 000050 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADR--------NSAKRREGALLAFECLCEK 1409 (2622)
Q Consensus 1340 ~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg--~~~l~~~~i~~~L~~~l~~~--------~~~~~R~~al~al~~La~~ 1409 (2622)
+.+++.|..+++...|..|+.+|..++.+-. ...+...+.++.|.+++... .+...++.|+.+++.++.+
T Consensus 234 P~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 234 KQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 7788877655556789999999999986421 11111234566666666532 1233467788888888864
Q ss_pred hcccchhHHH---------------------------------------HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHH
Q 000050 1410 LGRLFEPYVI---------------------------------------QMLPLLLVAFSDQVVA-VREAAECAARAMMS 1449 (2622)
Q Consensus 1410 ~~~~~~~~v~---------------------------------------~ilp~ll~~l~D~~~~-VR~aa~~al~~i~~ 1449 (2622)
... +-+++. .+.+.+.+++.++++. +.+.+..++..++.
T Consensus 314 ~~~-ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~g 392 (2102)
T PLN03200 314 MSA-LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYG 392 (2102)
T ss_pred chh-hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcC
Confidence 322 111111 1123344444444333 24444445443322
Q ss_pred hhcHH---hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000050 1450 QLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2622)
Q Consensus 1450 ~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2622)
+..-. ......+.++..+...+-..+..++..|..++.+..+....- -...+|.|+++|.+++..+|+.|+++|+.
T Consensus 393 N~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~n 472 (2102)
T PLN03200 393 NAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAI 472 (2102)
T ss_pred ChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 21100 012344556666666667888999999999887654432221 13468999999999999999999999999
Q ss_pred HhhhcCC-h-hH--HhHHHHHHhhcCCCChhHH-HHHHHHHhccccc-cCChhh-hhhHHHHHHhhhcCCCHHHHHHHHH
Q 000050 1526 VGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN-TVDAPS-LALLVPIVHRGLRERSAETKKKAAQ 1598 (2622)
Q Consensus 1526 l~~~~~~-~-~i--~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~-~~~~~~-l~~i~p~L~~~l~d~~~~vr~~a~~ 1598 (2622)
++..-.+ . .+ ...+|.|.+.+..++..++ +|+.++.+..... ++..-. -...+|.|...+++.+++.+..++.
T Consensus 473 La~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~ 552 (2102)
T PLN03200 473 LTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552 (2102)
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 9863221 1 11 4678999999988888777 5777766532211 111111 1246788888899989999999999
Q ss_pred HHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-------chhhHHHHHHHhhhcCC
Q 000050 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNS 1671 (2622)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~-------~~~ll~~Ll~~L~~~~~ 1671 (2622)
++.++... ++. ..++.+..++..+++.++..+.++++.+......+. ....+|.|.+.+.++.
T Consensus 553 AL~nLi~~-~d~--------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs- 622 (2102)
T PLN03200 553 TLTKLVRT-ADA--------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK- 622 (2102)
T ss_pred HHHHHHhc-cch--------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-
Confidence 99999764 332 134566677888889999999999999877444321 2457888888887664
Q ss_pred hHHHHHHHHHHHHHHHHhchh----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcch-hhhHH-hHHHHHHhh
Q 000050 1672 NVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQ-QVLPAILDG 1745 (2622)
Q Consensus 1672 ~~~r~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f-~p~l~-~ii~~ll~~ 1745 (2622)
...+..++..|+.++..-... ...+.+|.++..+.+.+..++..+..+++.+.......= ..++. .++|++.+.
T Consensus 623 ~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 623 EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKL 702 (2102)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHH
Confidence 557888888888887633221 125678999999999999999999999999997432221 12233 389999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhc--hh-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCC
Q 000050 1746 LADENESVRDAALGAGHVLVEHYATT--SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2622)
Q Consensus 1746 L~d~~~~VR~~al~al~~lv~~~~~~--~i-~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde 1822 (2622)
+.+.+.++++.++.++..++..-... .. ...+|.+.+.+.+.+.+.|..++..+..+..+.+ .++
T Consensus 703 L~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~------------~~~ 770 (2102)
T PLN03200 703 AKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP------------VDD 770 (2102)
T ss_pred HhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC------------hhH
Confidence 99999999999999999887643211 11 2367888888888999999999999988875421 000
Q ss_pred cccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHH--HHHHHHHHHhhC--------hhhHHHHHHHHHHHHHH
Q 000050 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA--ALHVWKTIVANT--------PKTLKEIMPVLMNTLIS 1892 (2622)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~a--A~~~l~~l~~~~--------p~~l~~~l~~ll~~L~~ 1892 (2622)
.....+...| .+.+|...++..+.+.-.. |++++..++... |....--.|.-+..++.
T Consensus 771 ------~~~~~~~~~g------~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~ 838 (2102)
T PLN03200 771 ------VLKDSVQCRG------TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVR 838 (2102)
T ss_pred ------HHHHHHHHhC------cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHH
Confidence 0000111111 3344444444444444444 888888888631 22222233455677888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHh----ccch--hhhHHHHHh-hhcCCCChhhHHhHHHHHHHHHHhhChhhH-----H
Q 000050 1893 SLASSSSERRQVAGRALGELVRKL----GERV--LPSIIPILS-RGLKDPSASRRQGVCIGLSEVMASAGKSQL-----L 1960 (2622)
Q Consensus 1893 ~L~s~~~~~R~~A~~~L~~lv~~~----~~~~--l~~llp~L~-~~L~d~~~~vR~~a~~~L~~li~~~~~~~l-----~ 1960 (2622)
++.+.++.+...|+..|..+|+.- |+-+ .+..+..+- +.+++.+.++|.+.+..|-.-.+.+....+ .
T Consensus 839 ~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (2102)
T PLN03200 839 CLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDES 918 (2102)
T ss_pred HHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhh
Confidence 889999999999999999998642 2211 122333332 346678899998876655443333322211 2
Q ss_pred HhHHhHHHHHHHHhcCCc------HHHHHHHHHHHHH-HHHHhC------h-hhh-hhhHHHHHHhcccCCc-------h
Q 000050 1961 SFMDELIPTIRTALCDSI------LEVRESAGLAFST-LFKSAG------M-QAI-DEIVPTLLHALEDDQT-------S 2018 (2622)
Q Consensus 1961 ~~l~~ll~~l~~~L~d~d------~~VR~~A~~al~~-l~~~~g------~-~~~-~~ilp~Ll~~L~~~~~-------~ 2018 (2622)
.|+..++..+..++...+ .+++... ..... .....+ + ... ..+-=+|+..+.+.+. .
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e 997 (2102)
T PLN03200 919 GYLKLLIQALVDMLKQNSKKESLSIEIQTPR-GFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIME 997 (2102)
T ss_pred ccHHHHHHHHHHHHhccCcccccceeecCCc-cchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhh
Confidence 356667777766664321 1111000 00000 000000 0 011 1122244444433322 1
Q ss_pred hHHHHHHHHHHhhhccccccchhhhhhcCCC-chHHHH-HHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHH
Q 000050 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPL-SAFNAH-ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKE 2096 (2622)
Q Consensus 2019 ~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~-~~~~~~-aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~ 2096 (2622)
.++++++.+-+..+... | .-.-... ..+... -|+.|.....-...|-.-.++|.|...+++++.-.|-.+..
T Consensus 998 ~~~~~~~~~~~~~~~~~--~----q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 1071 (2102)
T PLN03200 998 AGGIEVLTEKLASYTSN--R----QAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQ 1071 (2102)
T ss_pred cccHHHHHHHHHhhccC--c----cccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHH
Confidence 34555555433221110 1 1000000 001111 12222111111122334456777777777666666777777
Q ss_pred HHHHhhhccCh------------hc-------HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHH
Q 000050 2097 AAETVTLVIDE------------EG-------VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST 2157 (2622)
Q Consensus 2097 al~~l~~~~~~------------~~-------l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~ 2157 (2622)
++..++..-+. .+ .+.=++.|..... +..-+|.--..++..+|+.-..-......+.++.
T Consensus 1072 ~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~ 1150 (2102)
T PLN03200 1072 ALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSE-EFSLVRNPDQVALERLFRVEDIRVGATARKAIPL 1150 (2102)
T ss_pred HHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHH-HhhccccHHHHHHHHHhhhhhhcchHHHHHHHHH
Confidence 77755442111 00 0111222222221 1111222223345556655444455566788888
Q ss_pred HHHHhcCCC--hhHHHHHHHHHHHHHhhcCcc--ch--hhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCc------
Q 000050 2158 LIVLLSDSD--STTVAAAWEALSRVVASVPKE--VQ--PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK------ 2225 (2622)
Q Consensus 2158 L~~~l~d~d--~~V~~~a~~aL~~l~~~~~~~--~l--~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~------ 2225 (2622)
|+.+++..+ +.+|..|...|..+.+..... .+ ...++.+...+.............. .+.-+...+
T Consensus 1151 Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~E--lL~IL~~~~e~~~~l 1228 (2102)
T PLN03200 1151 LVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASE--LLRILFSSPELRRHE 1228 (2102)
T ss_pred HHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHH--HHHHHhCCHHHHHHh
Confidence 888888544 467888888888887654421 10 0111112121111100000000000 000000000
Q ss_pred CchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh--hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhc
Q 000050 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV--IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303 (2622)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~ 2303 (2622)
.-...+..+...|..|+.+.|..|+.+|..+...- ..+... .+.++||+..+... ....+..++.+|-.+++.-
T Consensus 1229 ~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~---~~~~~~~a~~ai~pLv~ll~~~-~~~~~~~a~~ALvkL~kd~ 1304 (2102)
T PLN03200 1229 SAFGAVNQLVAVLRLGSRSARYSAARALQELFSAE---HIRDSELARQAVQPLVEMLNTG-SESEQHAAIGALIKLSSGN 1304 (2102)
T ss_pred hhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh---hhhhhhhhhccchHHHHHhccc-chhhhHHHHHHHHHHHcCC
Confidence 01125567777888899999999999999998652 222222 35677888877654 4566778888887777532
Q ss_pred CCCccCchH-----HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhc-----ccChhhHHHHHHHhhhcCCHhHHHHHHHH
Q 000050 2304 GIALKPFLP-----QLQTTFIKCLQDS-TRTVRSSAALALGKLSAL-----STRVDPLVGDLLSSLQVSDAGIREAILTA 2372 (2622)
Q Consensus 2304 ~~~l~p~l~-----~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~-----~~~~~~ll~~Ll~~l~~~d~~vr~~~l~A 2372 (2622)
.. +.-.- ..+..+++.|++. +..++..++.....+... .+--...++.|++.+.+....+++.++.+
T Consensus 1305 is--~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~v 1382 (2102)
T PLN03200 1305 PS--KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCA 1382 (2102)
T ss_pred CC--hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHH
Confidence 11 11111 3455677778876 567777666665543211 11122467778888776445558999999
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHH-----HHHHHHhhcCCCCchhhH
Q 000050 2373 LKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD-----LLQELLNLASSPSWAARH 2447 (2622)
Q Consensus 2373 L~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~-----~l~~ll~~~~~~~~~~r~ 2447 (2622)
|..++......-...-.+.+++++. .+-..++.....|..+|-+++..-|. ...+ .+..++-.+.......+.
T Consensus 1383 Ld~Lc~~eegre~~~~h~a~vplV~-~ilrvS~~a~E~AV~aL~kl~~~~~~-v~~Emv~~G~~~kllllLQ~c~~~lke 1460 (2102)
T PLN03200 1383 LDRLLDDEQLAELVAAHGAVVPLVG-LVVGTNYVLHEAAISALIKLGKDRPP-CKLDMVKAGIIERVLDILPEAPDSLCS 1460 (2102)
T ss_pred HHHHhcCHhhHHHHHHcCChhhHHH-HHHcCCHHHHHHHHHHHHHHhCCChH-HHHHHHHhCHHHHHHHHHHcCCHHHHH
Confidence 9888754211100011122334444 33334555667778888888744433 2222 222221111112222333
Q ss_pred hHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCC-hhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcC
Q 000050 2448 GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526 (2622)
Q Consensus 2448 ~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~ 2526 (2622)
.+.-+..++..+++.-..+.+..-+.+.+...+.++- ......|..++-.+++....... ..-.....+.+++..+.
T Consensus 1461 -kAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~-~~~~~~~~i~~Li~lL~ 1538 (2102)
T PLN03200 1461 -AIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLAS-LTLTPSQAIEPLIPLLE 1538 (2102)
T ss_pred -HHHHHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhh-hhcCccchHHHHHHHHc
Confidence 3333344555555432223333333444444454442 34456689999988887543211 11234678999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhCchhhhh--hHhhHHHHHHhhhcCCcchhhchhHHHHH
Q 000050 2527 DDSSEVRRRALSALKSVAKANPSAIMV--HVALFGPALAECLKDGSTPVRLAAERCAV 2582 (2622)
Q Consensus 2527 d~s~dvr~~a~~~l~~~a~~~~~~v~~--~l~~l~p~l~~~~~~~~~~vk~aae~a~~ 2582 (2622)
+.+..+++.|..+|..+..+- .++. .-...++||.+.+...+...|..|-+|+.
T Consensus 1539 s~~~~vqe~aa~ll~~l~~~~--~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~ 1594 (2102)
T PLN03200 1539 SPSQAVQQLAAELLSHLLAEE--HFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALE 1594 (2102)
T ss_pred CCcHHHHHHHHHHHHHHhcch--HHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 999999999999999998653 3333 23668999999999988888888877773
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-23 Score=248.63 Aligned_cols=645 Identities=14% Similarity=0.158 Sum_probs=433.4
Q ss_pred ChHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCccccchhh-----------------hee-eecCCchHHHH
Q 000050 1055 QPNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTS-----------------LWI-AVHDPEKSVAE 1115 (2622)
Q Consensus 1055 ~~~~~~~ll~~-~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~ 1115 (2622)
+..++.+|.++ .+|||+++|..++.+|.+.... ++..+...+.. +.+ +-|..+++..+
T Consensus 2 ~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~---dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~ 78 (858)
T COG5215 2 KKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSG---DFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQK 78 (858)
T ss_pred chHHHHHHHhcccCCCCCCccccHHHHHHHhccc---cHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 34577788877 6999999999999999886422 22222222222 222 23334444444
Q ss_pred HHHHHHHhcCCCCCCCh-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 000050 1116 AAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192 (2622)
Q Consensus 1116 la~~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 1192 (2622)
-....|.....+.++++ .-.+..|.++.+..-.+||+.+++++. +-| ..|++++..+.... ++ ..+..
T Consensus 79 ~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nv----g~-----eqp~~ 149 (858)
T COG5215 79 GCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNV----GD-----EQPVS 149 (858)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhc----cc-----cCchH
Confidence 46788998777777666 456789999999999999999999975 233 36666666665432 22 23456
Q ss_pred hhhHHHHHHHHhhhhhCCCChh----HHHHHHHhhhcC-CCCHHHHHHHHHHHHH-HHHHhc----cchhhhhHHH-HHH
Q 000050 1193 GRQGIALALHSAADVLRTKDLP----VIMTFLISRALA-DTNADVRGRMLNAGIM-IIDKHG----RDNVSLLFPI-FEN 1261 (2622)
Q Consensus 1193 ~R~~~~~al~~~~~~~~~~~~~----~i~~~li~~~l~-d~~~~VR~~a~~a~~~-~i~~~g----~~~~~~llp~-~~~ 1261 (2622)
++..+..+++|.++.-.++++. .++..++.+++. .++..||.+++.|+.. .+-..| ...++.+|.+ ++.
T Consensus 150 ~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvcea 229 (858)
T COG5215 150 GKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEA 229 (858)
T ss_pred hHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehh
Confidence 7778889999999877775542 233334445654 5788999999999876 222222 2345666665 444
Q ss_pred HhcCCCCChhhhhhhhhHHHHHHHHHhh-hhccCCcchH-HHHHHHHHHcCCCCHHHHHHHHhhhHhhHhh---------
Q 000050 1262 YLNKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--------- 1330 (2622)
Q Consensus 1262 ~l~~~~~~~~~~~~vr~~~~~~~~~la~-~l~~~~~~v~-~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~--------- 1330 (2622)
+-.. +.++..+++.++..+-. |+.--.++++ .+......++++++++|...+.+.-+.+...
T Consensus 230 tq~~-------d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 230 TQGN-------DEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred ccCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 4332 34566777666655542 2211123333 3445556788999999988777654433321
Q ss_pred -hcc-----------chHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCC
Q 000050 1331 -MQD-----------EAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNS 1392 (2622)
Q Consensus 1331 -~~~-----------~~~~~i~~Ll~~L~~~------~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~ 1392 (2622)
.++ ...+.+|.++..|.++ ++|...++|+.||...++..|...+. +++.++.+.++++ +
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~~-~ 379 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRSE-S 379 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccCc-h
Confidence 110 1246788999988863 47999999999999999999999887 6999999999998 8
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----h-HHhhHHHHHhh
Q 000050 1393 AKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----G-VKLVLPSLLKG 1466 (2622)
Q Consensus 1393 ~~~R~~al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~-v~~ilp~Ll~~ 1466 (2622)
|+.|++|+++||.+.++.. ....+|+.+.+|.+...+.|+.-.|.+.+..|++++++.+... + +.......+.+
T Consensus 380 w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liG 459 (858)
T COG5215 380 WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG 459 (858)
T ss_pred hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhh
Confidence 9999999999999998765 4567899999999999999999999999999999998865432 2 23333344444
Q ss_pred ccCCChhhHHHHHHHHHHHHhh-------CchhhhhhhhhhHHHHhhhh--cCCCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1467 LEDKAWRTKQSSVQLLGAMAYC-------APQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1467 L~~~~w~~r~~a~~~L~~la~~-------~p~~l~~~L~~ivp~L~~~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
+.+. .+....+++..-.++.+ .+..+.+.++.|+..|++.. .+.+...|.++..+|+.+....++.. .+
T Consensus 460 l~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V-~~ 537 (858)
T COG5215 460 LMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV-SD 537 (858)
T ss_pred hhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH-HH
Confidence 4432 22223333444344333 24456667777887777653 35566789999999999988765421 11
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH
Q 000050 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2622)
Q Consensus 1538 ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2622)
++-.+..... .+..+|+..+... ...-+... -.++....+..+..+... .+.++.+.-
T Consensus 538 ~~a~~~~~~~---~kl~~~isv~~q~--l~~eD~~~---------------~~elqSN~~~vl~aiir~--~~~~ie~v~ 595 (858)
T COG5215 538 ILAGFYDYTS---KKLDECISVLGQI--LATEDQLL---------------VEELQSNYIGVLEAIIRT--RRRDIEDVE 595 (858)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhhh--hhhHHHHH---------------HHHHHHHHHHHHHHHHHh--cCCCcccHH
Confidence 1111111111 1112233322210 00000000 124555566666666664 345788888
Q ss_pred hhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH
Q 000050 1618 GLLLPEVKKVLVDPI-PEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693 (2622)
Q Consensus 1618 ~~ll~~L~~~L~d~~-~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~ 1693 (2622)
+++|..+++.+.... ..+-.....+++++...+|+. |.+.++|.+.+.+...+ ..+-..+..-++.+...+|.++
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d-~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTD-RFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchh-HHHHHHHHHHHHHHHHHhhhhH
Confidence 999999999998764 456678889999999988865 78899999999884433 3344444555788999999884
Q ss_pred H---HhHhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhc
Q 000050 1694 F---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2622)
Q Consensus 1694 l---~~llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L 1746 (2622)
. +.++..+.+.++++ +.++|+..+++|++++..+|..|.+|+..++-.+.+.-
T Consensus 675 ~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 675 NIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3 67788888888875 67899999999999999999999999999887766553
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-21 Score=250.58 Aligned_cols=615 Identities=17% Similarity=0.287 Sum_probs=435.2
Q ss_pred hHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcc---hHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhh
Q 000050 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK---VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331 (2622)
Q Consensus 1255 llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~---v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~ 1331 (2622)
+...++..+.. ...+.|.+.++|+-.+.+|+....+. .++|...+...|.|.++-+|..+++.++- +...
T Consensus 819 ~~~~l~~~~~s------~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlgl-VYel 891 (1702)
T KOG0915|consen 819 ILKLLDTLLTS------PNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGL-VYEL 891 (1702)
T ss_pred HHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceE-EEec
Confidence 34445554443 34578999999999999998654332 47788999999999999999999999974 3444
Q ss_pred ccc--hHHHHHHHHHHHhcCCC---------------------hHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHh
Q 000050 1332 QDE--APTLVSRLLDQLMKSDK---------------------YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388 (2622)
Q Consensus 1332 ~~~--~~~~i~~Ll~~L~~~~~---------------------~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~ 1388 (2622)
++. ...+++.|+++|..++. .+........|..++..+|...+. |.+| +..+
T Consensus 892 gd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLV-YKFM----~LAn 966 (1702)
T KOG0915|consen 892 GDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLV-YKFM----QLAN 966 (1702)
T ss_pred CCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHH-HHHH----HHhh
Confidence 432 36789999999986431 112345667788888888866553 2333 3445
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---hcHHhHHhhHHHHHh
Q 000050 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ---LSAQGVKLVLPSLLK 1465 (2622)
Q Consensus 1389 ~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~---l~~~~v~~ilp~Ll~ 1465 (2622)
+...|+.|.||.++|+.+++..|..++||+.+++|-+...--||+..|+++.....+.+... .-+.....++..|+.
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLV 1046 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 55579999999999999999999999999999999999999999999999998888888654 334456889999999
Q ss_pred hccCCChhhHHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHh
Q 000050 1466 GLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544 (2622)
Q Consensus 1466 ~L~~~~w~~r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~ 1544 (2622)
++.+..||+|.++|.+|..+..+.| .++...+|+++..++++++|-+..||++|-.+...+++.+-
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v------------- 1113 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV------------- 1113 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 9999999999999999999998765 46788899999999999999999999999998888876431
Q ss_pred hcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh-hhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHH
Q 000050 1545 GLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR-GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE 1623 (2622)
Q Consensus 1545 ~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~ 1623 (2622)
.+.|++..+. ....++.++|++.. ++-+.-.++|+.+...+..+.+.. ++.+.||.+.++|.
T Consensus 1114 r~~d~~~~~~---------------~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss--g~~lkP~~~~LIp~ 1176 (1702)
T KOG0915|consen 1114 RICDVTNGAK---------------GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS--GKELKPHFPKLIPL 1176 (1702)
T ss_pred hhcccCCccc---------------HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc--hhhhcchhhHHHHH
Confidence 2223322111 12334556777664 444667899999999999999854 46899999999999
Q ss_pred HHHHhcCCCHHHHHH-HHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHH
Q 000050 1624 VKKVLVDPIPEVRSV-AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDII 1702 (2622)
Q Consensus 1624 L~~~L~d~~~~vR~~-a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~ 1702 (2622)
+......-.+.|-.. +.++. +.+ .+.++.+-...... .-..+++...+.......+++++|.+.
T Consensus 1177 ll~~~s~lE~~vLnYls~r~~-------~~e--~ealDt~R~s~aks------spmmeTi~~ci~~iD~~vLeelip~l~ 1241 (1702)
T KOG0915|consen 1177 LLNAYSELEPQVLNYLSLRLI-------NIE--TEALDTLRASAAKS------SPMMETINKCINYIDISVLEELIPRLT 1241 (1702)
T ss_pred HHHHccccchHHHHHHHHhhh-------hhH--HHHHHHHHHhhhcC------CcHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999988766665332 22221 110 11111111111000 123456777777777788899999999
Q ss_pred HhccCC-ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHh
Q 000050 1703 RNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781 (2622)
Q Consensus 1703 ~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~ 1781 (2622)
+..... .-..|.++...+..+...+|.+..||..+.+..++.++.|.++.+|.+...|+..++..-+++....++..+.
T Consensus 1242 el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1242 ELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred HHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 988654 6678999999999999999999999999999999999999999999999999998887655544444443333
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHH
Q 000050 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR 1861 (2622)
.....+....+..++..+..+..+. .+.+ ..+...+++.+|....+......
T Consensus 1322 ~~~l~k~es~~siscatis~Ian~s---------------------------~e~L-kn~asaILPLiFLa~~ee~Ka~q 1373 (1702)
T KOG0915|consen 1322 ADLLGKDESLKSISCATISNIANYS---------------------------QEML-KNYASAILPLIFLAMHEEEKANQ 1373 (1702)
T ss_pred HHHhccCCCccchhHHHHHHHHHhh---------------------------HHHH-HhhHHHHHHHHHHHHhHHHHHHH
Confidence 2221111111122222222222110 1111 12445678888877766644444
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHhhhcCCCC
Q 000050 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPS 1936 (2622)
Q Consensus 1862 ~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~ 1936 (2622)
..=-++|..++.....+++-+.+.++..++.... +..+..|..++..+..++..... ++.-.+.+.+...+....
T Consensus 1374 ~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRi 1453 (1702)
T KOG0915|consen 1374 ELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRI 1453 (1702)
T ss_pred HHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccc
Confidence 5556778888877667777677777777666655 45589999999988877765433 234455666677777777
Q ss_pred hhhHHhHHHHHHHHHHhh
Q 000050 1937 ASRRQGVCIGLSEVMASA 1954 (2622)
Q Consensus 1937 ~~vR~~a~~~L~~li~~~ 1954 (2622)
++-+.....++......+
T Consensus 1454 wdGKe~iLKAl~~~~~a~ 1471 (1702)
T KOG0915|consen 1454 WDGKEEILKALASAFEAG 1471 (1702)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 777777666666554433
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-20 Score=222.76 Aligned_cols=761 Identities=17% Similarity=0.235 Sum_probs=487.1
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCC-hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc
Q 000050 1508 LTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2622)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~ 1586 (2622)
.++..+..|..+.+-|..=+..++. |.++.++|.++...-++
T Consensus 372 vKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeD------------------------------------- 414 (1172)
T KOG0213|consen 372 VKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLED------------------------------------- 414 (1172)
T ss_pred hcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccc-------------------------------------
Confidence 4566777888887777655544432 34555666554432221
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L 1666 (2622)
..|......+..+...+++ -..||...++-.+..++-|++...|...-+.++.|+...|=. ..+..+--.+
T Consensus 415 ----qerhllVkvidriLyklDd--lvrpYVhkILvViepllided~yar~egreIisnLakaaGla---~mistmrpDi 485 (1172)
T KOG0213|consen 415 ----QERHLLVKVIDRILYKLDD--LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA---TMISTMRPDI 485 (1172)
T ss_pred ----hhhhhHHHHHHHHHHhhcc--cchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhH---HHHHhhcCCc
Confidence 2233333444444443333 457888888777778888999999999999999999988732 2222221222
Q ss_pred hhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC-ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhh
Q 000050 1667 KSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2622)
Q Consensus 1667 ~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2622)
.+.+ .-+|...+.+++.++.++|.. .++|.+...|.+. +|.-|..++.+...++...|-...||+..++..+-.+
T Consensus 486 dn~d-eYVRnttarafavvasalgip---~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 486 DNKD-EYVRNTTARAFAVVASALGIP---ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred cccc-HHHHHHHHHHHHHHHHHhCcH---HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 2333 337888888899999999865 5666677777776 9999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhh---chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCC
Q 000050 1746 LADENESVRDAALGAGHVLVEHYAT---TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2622)
Q Consensus 1746 L~d~~~~VR~~al~al~~lv~~~~~---~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde 1822 (2622)
+.|+...||..+..++..+.+..++ +..+.++..|.++. |+.
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgi-------r~h---------------------------- 606 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGI-------RQH---------------------------- 606 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-------HHc----------------------------
Confidence 9999999998888888777665433 33444444443332 111
Q ss_pred cccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHH-HHHHHHHHHHHHhcCCCHHH
Q 000050 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE-IMPVLMNTLISSLASSSSER 1901 (2622)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~-~l~~ll~~L~~~L~s~~~~~ 1901 (2622)
-..+-.+-+.+++.++.-....... |...++-.++.-+.+++++.
T Consensus 607 ----------------------------------rgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeem 652 (1172)
T KOG0213|consen 607 ----------------------------------RGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEM 652 (1172)
T ss_pred ----------------------------------cChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHH
Confidence 1111112222333333322222222 33456677778889999999
Q ss_pred HHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcC-----CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHH
Q 000050 1902 RQVAGRALGELVRKLGER---VLPSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2622)
Q Consensus 1902 R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~-----d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2622)
+......+..++..-|-. ....++|.+...+- -....-|+ ....-.+++...|. ..++..+..-
T Consensus 653 kkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykq-lv~ttv~ia~KvG~-------~~~v~R~v~~ 724 (1172)
T KOG0213|consen 653 KKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQ-LVDTTVEIAAKVGS-------DPIVSRVVLD 724 (1172)
T ss_pred HHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhh-HHHHHHHHHHHhCc-------hHHHHHHhhh
Confidence 999999999999876643 23444554443211 11112222 12223334444443 3345555566
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhhhhh-----hHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCC
Q 000050 1974 LCDSILEVRESAGLAFSTLFKSAGMQAIDE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2622)
Q Consensus 1974 L~d~d~~VR~~A~~al~~l~~~~g~~~~~~-----ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~ 2048 (2622)
+.|..+..|...+++...+....|...+++ ++..++..+.....
T Consensus 725 lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt------------------------------- 773 (1172)
T KOG0213|consen 725 LKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT------------------------------- 773 (1172)
T ss_pred hccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc-------------------------------
Confidence 678888899999999998888777644432 22222222211110
Q ss_pred CchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhH
Q 000050 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASI 2128 (2622)
Q Consensus 2049 ~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~v 2128 (2622)
........++.+...+|....||+++|+..++..|+++.+.+|..++..++.+... ++....
T Consensus 774 ~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~V-------------lktc~e----- 835 (1172)
T KOG0213|consen 774 EDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKV-------------LKTCGE----- 835 (1172)
T ss_pred chhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-------------HHhccH-----
Confidence 00112245566666677777888888888887777777777777766655544321 111100
Q ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhh
Q 000050 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208 (2622)
Q Consensus 2129 R~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~ 2208 (2622)
..+..| +=-.|...++...++|....+.|+..++...+-.-
T Consensus 836 ----------------e~~m~~---lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k-------------------- 876 (1172)
T KOG0213|consen 836 ----------------EKLMGH---LGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK-------------------- 876 (1172)
T ss_pred ----------------HHHHHH---hhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc--------------------
Confidence 011111 12234556777788888888888877765432110
Q ss_pred hhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChh-hhhhhhhhhhHHHHHhhcCCCCHh
Q 000050 2209 RKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ-SLKEFVIPITGPLIRIIGDRFPWQ 2287 (2622)
Q Consensus 2209 ~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~-~l~p~v~~i~~~Li~~l~~~~~~~ 2287 (2622)
.-.-++.++|.+.-.|.+....+.++....+|.+++..++- ..+.| ..|.--|+..|... ..+
T Consensus 877 --------------m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW-MRIcfeLlelLkah-kK~ 940 (1172)
T KOG0213|consen 877 --------------MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW-MRICFELLELLKAH-KKE 940 (1172)
T ss_pred --------------cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHH-HHH
Confidence 00123445566655666777888889999999999876631 12333 34555566777653 678
Q ss_pred hHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHH
Q 000050 2288 VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIRE 2367 (2622)
Q Consensus 2288 vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~ 2367 (2622)
+|.++..++|-+.+.+|. ..+..+++..|.-..+..|.-...+++..+..++- -..+|.|++-.+.++..||+
T Consensus 941 iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred HHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-hhhhHHHHhhccCchhHHHH
Confidence 999999999999998873 35777888888777777777777777777665432 34789999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhH
Q 000050 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 2447 (2622)
Q Consensus 2368 ~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~ 2447 (2622)
.+|+||..+.+..|. ++..|+-.+.++|.+.+.|+|...|..++.++.+++...+.-.....+.+++|.+
T Consensus 1014 GVLkalsf~Feyige-mskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~i--------- 1083 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGE-MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLI--------- 1083 (1172)
T ss_pred hHHHHHHHHHHHHHH-HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHh---------
Confidence 999999999887765 4568999999999999999999999999999999987755433333444444421
Q ss_pred hHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCC
Q 000050 2448 GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHD 2527 (2622)
Q Consensus 2448 ~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d 2527 (2622)
+..+-+..|.+-.+...|+..+-..- ....++.-+.+++-|
T Consensus 1084 ------------------------------WpNIle~sPhviqa~~e~~eg~r~~L---------g~~~~~~Y~~QGLFH 1124 (1172)
T KOG0213|consen 1084 ------------------------------WPNILETSPHVIQAFDEAMEGLRVAL---------GPQAMLKYCLQGLFH 1124 (1172)
T ss_pred ------------------------------hhhhcCCChHHHHHHHHHHHHHHHHh---------chHHHHHHHHHhccC
Confidence 11111222222222222332221111 124577788889999
Q ss_pred CCHHHHHHHHHHHHHHHhhCchhhhhhH
Q 000050 2528 DSSEVRRRALSALKSVAKANPSAIMVHV 2555 (2622)
Q Consensus 2528 ~s~dvr~~a~~~l~~~a~~~~~~v~~~l 2555 (2622)
++..||..-..+.+.+-+...+.+.+++
T Consensus 1125 ParkVR~~yw~vyn~my~~~~dalv~~y 1152 (1172)
T KOG0213|consen 1125 PARKVRKRYWTVYNSMYHGSQDALVACY 1152 (1172)
T ss_pred cHHHHHHHHHHHHHhHhhcccchhhhcc
Confidence 9999999999999999888777655543
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-20 Score=223.92 Aligned_cols=675 Identities=18% Similarity=0.241 Sum_probs=459.4
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccc-hhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhcc-
Q 000050 1216 IMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK- 1293 (2622)
Q Consensus 1216 i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~-~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~- 1293 (2622)
++..|+ -..+..+..|..++..+..-...+|.. ..+.++|++... . -+|.-|+..+-.+..+--.++.
T Consensus 365 i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~------t--LeDqerhllVkvidriLyklDdl 434 (1172)
T KOG0213|consen 365 IMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSP------T--LEDQERHLLVKVIDRILYKLDDL 434 (1172)
T ss_pred HHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCc------c--ccchhhhhHHHHHHHHHHhhccc
Confidence 444442 235667788888888877766667765 356777764321 1 1223355555555555444432
Q ss_pred CCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccc
Q 000050 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2622)
Q Consensus 1294 ~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~ 1373 (2622)
..|++..|+--+-..+-+++.-.|...-+.++.+....+ ....+..+-..+. ..|.-+|...+.+.+.+++.+|...
T Consensus 435 vrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDid-n~deYVRnttarafavvasalgip~ 511 (1172)
T KOG0213|consen 435 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDID-NKDEYVRNTTARAFAVVASALGIPA 511 (1172)
T ss_pred chhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCcc-cccHHHHHHHHHHHHHHHHHhCcHH
Confidence 245665554444455556666666655555655554433 1222222222222 2345689999999999999998754
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000050 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2622)
Q Consensus 1374 l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2622)
+.++|+..+.++++|..|+.++.+...++...|...-||+..++..+-.++.|.+..||-.++.++..+++...+
T Consensus 512 -----llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 512 -----LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATP 586 (1172)
T ss_pred -----HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC
Confidence 678899999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred HhH---HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCch---hhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000050 1454 QGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ---QLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2622)
Q Consensus 1454 ~~v---~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~---~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2622)
+++ ..++.+|+++.....- ++-..+|.++.+.+|. +...++ .+++-.+.+-.+.++.+.++...+.+.++
T Consensus 587 ygie~fDsVlkpLwkgir~hrg---k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qc 663 (1172)
T KOG0213|consen 587 YGIEQFDSVLKPLWKGIRQHRG---KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQC 663 (1172)
T ss_pred cchHHHHHHHHHHHHHHHHccC---hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Confidence 865 6778788777653211 1223455666665543 333333 35666666777888888999888888888
Q ss_pred hhhcC-Chh-H-HhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 000050 1527 GSVIK-NPE-I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2622)
Q Consensus 1527 ~~~~~-~~~-i-~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l 1603 (2622)
+..-+ .|. + .+++|.++...- .-|.|+ +.++. +...+.-..+
T Consensus 664 c~t~Gv~~~y~r~dilp~ff~~fw----~rrmA~----------------------------drr~y---kqlv~ttv~i 708 (1172)
T KOG0213|consen 664 CATDGVEPAYIRFDILPEFFFSFW----GRRMAL----------------------------DRRNY---KQLVDTTVEI 708 (1172)
T ss_pred hcccCCCHHHHhhhhhHHHHhhhh----hhhhhc----------------------------cccch---hhHHHHHHHH
Confidence 76554 222 2 455565554421 111111 00111 1111222334
Q ss_pred hhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhhhcCChHHHHHH
Q 000050 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGA 1678 (2622)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~r~~a 1678 (2622)
|..+|. +.++..+..-+.|..+..|..++.++..+...+|..-+ ..++..++..++.++.. + ...
T Consensus 709 a~KvG~--------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~-d-~vm 778 (1172)
T KOG0213|consen 709 AAKVGS--------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE-D-SVM 778 (1172)
T ss_pred HHHhCc--------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc-h-hhh
Confidence 444443 23555566666788888999999999999988885422 34556666666554432 1 235
Q ss_pred HHHHHHHHHHhch---hHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcc-hhhhHHhHHHHHHhhcCCCChHHH
Q 000050 1679 AQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVR 1754 (2622)
Q Consensus 1679 ~~~L~~i~~~~g~---~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~VR 1754 (2622)
..+++.+...+|. .++..+...++..++++.+.+|+.++..++.++..+... =...+..+--.+..+|..++++|-
T Consensus 779 l~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvL 858 (1172)
T KOG0213|consen 779 LLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVL 858 (1172)
T ss_pred hhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHH
Confidence 5778888888886 367888888889999999999999999999998766432 012334444567889999999999
Q ss_pred HHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHH
Q 000050 1755 DAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2622)
Q Consensus 1755 ~~al~al~~lv~~~~~~----~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~ 1830 (2622)
-..+.|+..|+...+-. .+..++|.+...+.+...++...++.++|.+...-+ +-.+.
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp--------------E~v~a---- 920 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP--------------EYVSA---- 920 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc--------------ccCCH----
Confidence 99999999998877533 467799999999999999999999999998853211 11111
Q ss_pred HHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000050 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1910 (2622)
Q Consensus 1831 ~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~ 1910 (2622)
..+-++.-.|...+...+..+|++|.+.+|.++..-+. ..++..+++.|...+...|....-+++
T Consensus 921 ---------REWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIa 985 (1172)
T KOG0213|consen 921 ---------REWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIA 985 (1172)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhh
Confidence 11112322333334555778999999999999986553 134455555666666666666666666
Q ss_pred HHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000050 1911 ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990 (2622)
Q Consensus 1911 ~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~ 1990 (2622)
-+.+.+|+- .++|.|..-...++.+|++|++.+++-+.+..+ +...+|+-.+.|.+..+|.|.|..-|+.|+.++.
T Consensus 986 IVaE~c~pF---tVLPalmneYrtPe~nVQnGVLkalsf~Feyig-emskdYiyav~PlleDAlmDrD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 986 IVAETCGPF---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIG-EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIK 1061 (1172)
T ss_pred hhhhhcCch---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHH
Confidence 666665543 567888877788999999999999998887765 4556788999999999999999999999888776
Q ss_pred HHH
Q 000050 1991 TLF 1993 (2622)
Q Consensus 1991 ~l~ 1993 (2622)
.+.
T Consensus 1062 Hl~ 1064 (1172)
T KOG0213|consen 1062 HLA 1064 (1172)
T ss_pred HHh
Confidence 663
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=238.63 Aligned_cols=515 Identities=22% Similarity=0.307 Sum_probs=383.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCC
Q 000050 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2622)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~ 1588 (2622)
.|.++.||..-..+.......-++..+..+.|.+-+.++...
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-------------------------------------- 68 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-------------------------------------- 68 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--------------------------------------
Confidence 788888888877777666655444555556665555543211
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhh
Q 000050 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2622)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~ 1668 (2622)
+..+|....-..+.++... ...+. -...++..+.+.+..|.+.+|.....|+..+........-..+.+.+.+.+.
T Consensus 69 ~~~~~~~~~v~~~~~a~~~-~~~d~--~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~- 144 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHL-QIVDP--RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT- 144 (569)
T ss_pred hHHHhhhhHHHHHHHHHhc-cccCc--chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-
Confidence 1233333333344444432 21222 2335788888889999999999999999999887665545555666666665
Q ss_pred cCChHHHHHHHHHHHHHHHHhchhHH--HhHhHHHHHhccCCC-hhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhh
Q 000050 1669 DNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2622)
Q Consensus 1669 ~~~~~~r~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~~~~-~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2622)
......|.+++.+++.+..+.|...+ ..++..+.....+.. ...|++++.++......+|..|+||+..++|.++..
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 34466899999999999998888766 346777777777764 455668999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccc
Q 000050 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2622)
Q Consensus 1746 L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~ 1825 (2622)
..|..+.||.++..+...++..++..+++.++|.+...+.+..||...++++++|.+.++.+
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap------------------ 286 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP------------------ 286 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch------------------
Confidence 99999999999999999999999999999999999999998899999999999998876532
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 000050 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVA 1905 (2622)
Q Consensus 1826 ~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A 1905 (2622)
..+.. ...++++.+-..++|+..+||+++..++..+...-.. +-+..++|.+++++++++..+.. +
T Consensus 287 -----~qLs~-----~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e-~ 352 (569)
T KOG1242|consen 287 -----KQLSL-----CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPE-C 352 (569)
T ss_pred -----HHHHH-----HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHH-H
Confidence 11111 3346777777788999999999999999887763321 22455666677778887633322 2
Q ss_pred HHHHH--HHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhh-ChhhHHHhHHhHHHHHHHHhcCCcHHHH
Q 000050 1906 GRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2622)
Q Consensus 1906 ~~~L~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~-~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2622)
...|+ .++..+.+..+.-++|++.+++.+++...+..++..++.+..-. .+..+.+|++.++|.+...+.|+.|+||
T Consensus 353 ~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 353 LDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVR 432 (569)
T ss_pred HHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHH
Confidence 22222 33344445568899999999999999999999999999988777 6778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCC---chhHHHHHHHHHHhhhccccccchhhhhhcC--------CCch
Q 000050 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPHILPKLVHL--------PLSA 2051 (2622)
Q Consensus 1983 ~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~--------~~~~ 2051 (2622)
..++++++.+.+..|...+++.+|.+.+.+.++. .+..+.+.+.+++...+.......+|..... .+..
T Consensus 433 ~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~d 512 (569)
T KOG1242|consen 433 AVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRD 512 (569)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhcc
Confidence 9999999999999999888999999999986643 3467778888888654433333333333211 1111
Q ss_pred HHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHH
Q 000050 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097 (2622)
Q Consensus 2052 ~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~a 2097 (2622)
.-...+..+....|..+.+|+..+++.+.+.+.+.++..+..+.++
T Consensus 513 g~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 513 GVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred CeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 2223444455566788999999999999999988887777666554
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-18 Score=201.59 Aligned_cols=669 Identities=14% Similarity=0.188 Sum_probs=422.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH----
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF---- 1694 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~-~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l---- 1694 (2622)
+-...++.|..+.|+.-..|+..++++++. ++...+++++..+......+.+...++.+...++.++....++.+
T Consensus 95 vK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 95 VKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 445566778899999999999999999984 333367888887777776777777778888889999888777544
Q ss_pred HhHhHHHHHhcc--CCChhhHHHHHHHHHHhhhhhCcchhh--hHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 000050 1695 EHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2622)
Q Consensus 1695 ~~llp~l~~~l~--~~~~~vR~~al~~l~~L~~~~g~~f~p--~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~ 1770 (2622)
..++-.+..... .++..+|-+++.++.+-.....+.|.. -...++.......+.+++++..+++.++..++..|-+
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~ 254 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK 254 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334444554443 357789988888887744444443321 1233666777777788899999999999888765432
Q ss_pred c---hhhh-hHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHH
Q 000050 1771 T---SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2622)
Q Consensus 1771 ~---~i~~-llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il 1846 (2622)
. ..+. +.....+++.+.+.++...+++.-..+... +-+ . ..-...+. ++
T Consensus 255 fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE----------------eid-~----~~e~~~~p-----e~- 307 (858)
T COG5215 255 FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE----------------EID-G----EMEDKYLP-----EV- 307 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH----------------Hhh-h----HHHHhhcc-----cC-
Confidence 2 1111 222223344555555555555444333210 000 0 00000000 00
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhccchhhh
Q 000050 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGERVLPS 1923 (2622)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~---s~~~~~R~~A~~~L~~lv~~~~~~~l~~ 1923 (2622)
+ .. +.. ++ .......+|.++..+.+.=. +.+|.....|..||.-+.+..|+.++..
T Consensus 308 p-----~q--n~~-----------fa---~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p 366 (858)
T COG5215 308 P-----AQ--NHG-----------FA---RAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP 366 (858)
T ss_pred c-----hh--hcc-----------hH---HHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH
Confidence 0 00 000 00 01233455666555544222 3467888999999999999999998888
Q ss_pred HHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhh
Q 000050 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003 (2622)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ 2003 (2622)
++..+.+.++.+++..|..+..++|.++..-....+.+++++.+|.+...+.|+.--|++.++.||+.+.++.... +++
T Consensus 367 Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~-i~p 445 (858)
T COG5215 367 VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI-ISP 445 (858)
T ss_pred HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-cCc
Confidence 9999999999999999999999999999877778889999999999999999999999999999999997765321 111
Q ss_pred h--HHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCC-chHHHHHHHH----HHHHh---CCChhhhHh
Q 000050 2004 I--VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL-SAFNAHALGA----LAEVA---GPGLNFHLG 2073 (2622)
Q Consensus 2004 i--lp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~-~~~~~~aL~s----La~~~---g~~l~~~l~ 2073 (2622)
. ++... ...+.+ +.+.|. ......+.-. ++++. ..-+.++..
T Consensus 446 ~~Hl~~~v---------sa~liG-------------------l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ 497 (858)
T COG5215 446 CGHLVLEV---------SASLIG-------------------LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYL 497 (858)
T ss_pred cccccHHH---------HHHHhh-------------------hhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHH
Confidence 0 00000 011111 111121 1112222222 22222 233566777
Q ss_pred hhHHHHHHhc--CCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH
Q 000050 2074 TILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2622)
Q Consensus 2074 ~il~~Ll~~l--~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~ 2151 (2622)
.|+..|+..- ..++...|..+..+++.++.-..+ .+.+++..+.....+ .+
T Consensus 498 ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d-~V~~~~a~~~~~~~~--------------------------kl 550 (858)
T COG5215 498 AILNALVKGTELALNESNLRVSLFSALGTLILICPD-AVSDILAGFYDYTSK--------------------------KL 550 (858)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHH--------------------------HH
Confidence 7777777653 344556677777777777653322 122222111111100 01
Q ss_pred HHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2152 PNMISTLIVLLSDS----DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2152 ~~il~~L~~~l~d~----d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
.+.++.+-..+.-. .+++..+-...|..+++..+.+.- ..-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie-----------------------------------~v~ 595 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE-----------------------------------DVE 595 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----------------------------------cHH
Confidence 11111111111111 123444444444444444332110 111
Q ss_pred hhhHHHHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCC
Q 000050 2228 QPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA 2306 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~ 2306 (2622)
..++..|++.+.+. ..........+|+.+....+ +.+..|++.++|.|.+.++.. +..+...+...+|.|.+.++.+
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~~-d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNCT-DRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHHhhhh
Confidence 23555666666554 33455667888999988887 789999999999999999654 6778999999999999999999
Q ss_pred ccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHH-hcccChhhHHHHHHHhhhcC-------C--------HhHHHH
Q 000050 2307 LKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVS-------D--------AGIREA 2368 (2622)
Q Consensus 2307 l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~-~~~~~~~~ll~~Ll~~l~~~-------d--------~~vr~~ 2368 (2622)
+.+|...+...++++++++ +++++-....++|.++ .++.++.+|+..++-.++.. + ..++..
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~ 753 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQL 753 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHH
Confidence 9999999999999999997 8999999999999994 46778899998877666421 1 233444
Q ss_pred HHHHHHHHHhhcCCCC--ChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcCchHHHH
Q 000050 2369 ILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDGQLAD 2429 (2622)
Q Consensus 2369 ~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~~~~~ 2429 (2622)
+..|+-.+........ ..||.-.|+..+-....|+ .+...+++..+||.++..+|..+++.
T Consensus 754 v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~ 818 (858)
T COG5215 754 VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKF 818 (858)
T ss_pred HHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhh
Confidence 5555555554443222 2478888888887666665 34555788999999999999866544
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-17 Score=197.55 Aligned_cols=712 Identities=16% Similarity=0.176 Sum_probs=441.6
Q ss_pred HHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCCh
Q 000050 1593 KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 1672 (2622)
Q Consensus 1593 r~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~ 1672 (2622)
|......+..+...+++ -..||...++-....++-|+++..|...-+.+..++...|-.+.-. .+--.+.+.+++
T Consensus 222 rhl~vk~idr~Ly~ldd--l~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs---~mrpDi~~~deY 296 (975)
T COG5181 222 RHLVVKLIDRLLYGLDD--LKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVS---SMRPDITSKDEY 296 (975)
T ss_pred hHhHHHHHHHHHHhccc--ccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeee---eccCCcccccHH
Confidence 33344444444444333 3467877777777777889999999999999999999888442111 111122333333
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC-ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh
Q 000050 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2622)
Q Consensus 1673 ~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~ 1751 (2622)
+|.....+.+.++.++|.+ +++|.+-..+.+. +|+-|..++.+...++..+|....+|+..++..+-.++.|+..
T Consensus 297 -VRnvt~ra~~vva~algv~---~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~ 372 (975)
T COG5181 297 -VRNVTGRAVGVVADALGVE---ELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSR 372 (975)
T ss_pred -HHHHHHHHHHHHHHhhCcH---HHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccce
Confidence 7887888888898888865 5666677777775 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhc---hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHH
Q 000050 1752 SVRDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2622)
Q Consensus 1752 ~VR~~al~al~~lv~~~~~~---~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~ 1828 (2622)
.||..+..++..+.+..++- ..+.++..+.++....-
T Consensus 373 ~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hr---------------------------------------- 412 (975)
T COG5181 373 FVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHR---------------------------------------- 412 (975)
T ss_pred eeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcC----------------------------------------
Confidence 99998888888877765443 33444444433321110
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000050 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN-TPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2622)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~-~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~ 1907 (2622)
..+-.+-+.+.+.+..- .|.-...+....+..+...+++++++.+.....
T Consensus 413 -----------------------------gk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~ 463 (975)
T COG5181 413 -----------------------------GKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLV 463 (975)
T ss_pred -----------------------------CchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHH
Confidence 00000111111111111 122222334455666777778887776665544
Q ss_pred HHHHHHHHhccc----hhhhHHHHHhhh-----cCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCc
Q 000050 1908 ALGELVRKLGER----VLPSIIPILSRG-----LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978 (2622)
Q Consensus 1908 ~L~~lv~~~~~~----~l~~llp~L~~~-----L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d 1978 (2622)
... .|.+.|.. ...++.|.+... .....+.-++.+ .+-.-+.+..+. +.+...+..-+.|+.
T Consensus 464 v~~-~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~-~ttvilAk~~g~-------~~v~~kil~~~~De~ 534 (975)
T COG5181 464 VER-ICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVV-LTTVILAKMGGD-------PRVSRKILEYYSDEP 534 (975)
T ss_pred HHH-HHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceee-hhHHHHHHHcCC-------hHHHHHHHhhccCCc
Confidence 443 34444332 234444444331 111111111111 111111122221 345666677788888
Q ss_pred HHHHHHHHHHHHHHHHHhChhhhhh-----hHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHH
Q 000050 1979 LEVRESAGLAFSTLFKSAGMQAIDE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN 2053 (2622)
Q Consensus 1979 ~~VR~~A~~al~~l~~~~g~~~~~~-----ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~ 2053 (2622)
+-.|..++.+..++....|...+++ ++..++..+...+.. ...++|
T Consensus 535 ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t--------------~~~il~--------------- 585 (975)
T COG5181 535 EPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT--------------VGLILP--------------- 585 (975)
T ss_pred chhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc--------------ccEEEe---------------
Confidence 8889999888888887777544433 233333322221110 111222
Q ss_pred HHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHh---hhccCh-hcHHHHHHHHHhhcCCCChhHH
Q 000050 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV---TLVIDE-EGVESLVSELLKGVGDNQASIR 2129 (2622)
Q Consensus 2054 ~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l---~~~~~~-~~l~~ll~~Ll~~l~d~~~~vR 2129 (2622)
+++......+-...||++.|+..++..|+++.+.+|..++..++.+ +..+++ ..+..+-..|.+.+..+++.+-
T Consensus 586 --~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvL 663 (975)
T COG5181 586 --CFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVL 663 (975)
T ss_pred --cccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHH
Confidence 1111111224456799999999999999999999999888766655 445555 4477777788899998999998
Q ss_pred HHHHHHHHHHHhhccc-cccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhh
Q 000050 2130 RSSAYLIGYFYKNSKL-YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208 (2622)
Q Consensus 2130 ~~A~~~L~~l~~~~~~-~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~ 2208 (2622)
-..+.++..+....+. .+.|-..++++.|...+......|..+....++.++...+. +.+ .-+.++
T Consensus 664 gsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe-yi~-~rEWMR----------- 730 (975)
T COG5181 664 GSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE-YIG-VREWMR----------- 730 (975)
T ss_pred HHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc-cCC-HHHHHH-----------
Confidence 8888888877665443 35666788999999999988888888888888887765443 110 011111
Q ss_pred hhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhh
Q 000050 2209 RKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 2288 (2622)
Q Consensus 2209 ~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~v 2288 (2622)
|.=-+++.|.+-+.+.|.+|-..+|.+.+..|++.+
T Consensus 731 ---------------------IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdv----------------------- 766 (975)
T COG5181 731 ---------------------ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDV----------------------- 766 (975)
T ss_pred ---------------------HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHH-----------------------
Confidence 111234445555667777777777777766664322
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHH
Q 000050 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368 (2622)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~ 2368 (2622)
..+++..|.-..+..|.-...+++..+.+.+-+ ..+|.|+....+++..||+.
T Consensus 767 --------------------------L~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-sVlP~lm~dY~TPe~nVQnG 819 (975)
T COG5181 767 --------------------------LDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-SVLPTLMSDYETPEANVQNG 819 (975)
T ss_pred --------------------------HHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-hhHHHHHhcccCchhHHHHh
Confidence 222222233233344444444555554443322 36889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHh
Q 000050 2369 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHG 2448 (2622)
Q Consensus 2369 ~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~ 2448 (2622)
+++|+....+..|.. +..|.-.|.++|.+.+.|++...|..++..|.+++.+.+.......+-+++|.+.
T Consensus 820 vLkam~fmFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllw--------- 889 (975)
T COG5181 820 VLKAMCFMFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLW--------- 889 (975)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhh---------
Confidence 999999998877763 3678999999999999999999999999999999988664333333334443211
Q ss_pred HHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCC
Q 000050 2449 SVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD 2528 (2622)
Q Consensus 2449 ~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~ 2528 (2622)
..+-+..|.+-.+.-+++..+...- ....+..-+.+++-++
T Consensus 890 ------------------------------pNIle~sPhvi~~~~Eg~e~~~~~l---------g~g~~m~Yv~qGLFHP 930 (975)
T COG5181 890 ------------------------------PNILEPSPHVIQSFDEGMESFATVL---------GSGAMMKYVQQGLFHP 930 (975)
T ss_pred ------------------------------hhccCCCcHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHhccCc
Confidence 1111112222222222222211111 1245667778888999
Q ss_pred CHHHHHHHHHHHHHHHhhCchhhhhhH
Q 000050 2529 SSEVRRRALSALKSVAKANPSAIMVHV 2555 (2622)
Q Consensus 2529 s~dvr~~a~~~l~~~a~~~~~~v~~~l 2555 (2622)
+..||..-..+.+.+-+...++..|++
T Consensus 931 s~~VRk~ywtvyn~myv~~~damvp~y 957 (975)
T COG5181 931 SSTVRKRYWTVYNIMYVFDSDAMVPCY 957 (975)
T ss_pred hHHHHHHHHHHHhhhhhcccccccccc
Confidence 999999999999998888777766654
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-16 Score=190.08 Aligned_cols=715 Identities=16% Similarity=0.163 Sum_probs=461.0
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhh-ccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHh
Q 000050 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2622)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2622)
..++.....|..+...+..=..+..+.. +.+++|.+++. |+++ .|+--+.++..+.+.....-.++..+|+-.+-
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDq---erhl~vk~idr~Ly~lddl~~pyvhkILvVv~ 252 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQ---ERHLVVKLIDRLLYGLDDLKVPYVHKILVVVG 252 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhh---hhHhHHHHHHHHHHhcccccccceeeEEEEee
Confidence 4466667778777666655555555553 48888888764 5543 46777788888888765555555566554445
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHH----HHHHHHhccccccCChhhhhhHHHHH
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIV 1581 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2622)
.++-|+++.+|...-+.+.+++...+=. ..+...-.-+...++++|. +..... ++-....+.|.|
T Consensus 253 pllided~~~r~~g~eii~nL~~~~Gl~---~~vs~mrpDi~~~deYVRnvt~ra~~vva--------~algv~~llpfl 321 (975)
T COG5181 253 PLLIDEDLKRRCMGREIILNLVYRCGLG---FSVSSMRPDITSKDEYVRNVTGRAVGVVA--------DALGVEELLPFL 321 (975)
T ss_pred ccccCccHHHhcccHHHHHHHHHHhccc---eeeeeccCCcccccHHHHHHHHHHHHHHH--------HhhCcHHHHHHH
Confidence 5778899999988877777777665411 1111111112233455663 222221 122345678888
Q ss_pred HhhhcCC-CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchh
Q 000050 1582 HRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPD 1657 (2622)
Q Consensus 1582 ~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~---~~~~~ 1657 (2622)
.....++ +|+-|.....+...+|...|. ...+|+..++..+.+.+.|.+..||..++.+++.+++..|+ +.|+.
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~ 399 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDE 399 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHH
Confidence 8877776 999999999999999998775 67889999999999999999999999999999999998776 36788
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH----HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchh-
Q 000050 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ- 1732 (2622)
Q Consensus 1658 ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~- 1732 (2622)
++..|.+..+++.+. +-.....+.|-++.-+.+++. .+.+..+...+++++.+.+...+ .+...|...|..-.
T Consensus 400 vl~pLw~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l-~v~~~C~~v~~~tp~ 477 (975)
T COG5181 400 VLCPLWEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLL-VVERICDKVGTDTPW 477 (975)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHH-HHHHHHhccCCCCHH
Confidence 887787777665433 222333444444444455543 45666777778888777766544 34445554443211
Q ss_pred hhHHhHHHHHHhhcCCCChHHHHHHH---------HHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000050 1733 NYLQQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1733 p~l~~ii~~ll~~L~d~~~~VR~~al---------~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
-+..++.|.+++...- |..|. .+-..+.+..+. +.+...+.+...|+....|...+.+....+
T Consensus 478 ~lr~~v~pefF~~fw~-----rr~A~dr~~~k~v~~ttvilAk~~g~---~~v~~kil~~~~De~ep~r~m~a~~vsri~ 549 (975)
T COG5181 478 KLRDQVSPEFFSPFWR-----RRSAGDRRSYKQVVLTTVILAKMGGD---PRVSRKILEYYSDEPEPYRKMNAGLVSRIF 549 (975)
T ss_pred HHHHhhcHHhhchHHH-----hhhcccccccceeehhHHHHHHHcCC---hHHHHHHHhhccCCcchhhhhhhHHHHHHH
Confidence 1234455555544321 11111 111111122221 123333444455555555555555555544
Q ss_pred HHhcCCccccccc---------C-CCCCCcccH--HHHHH--HHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 000050 1804 FKVAGTSGKALLE---------G-GSDDEGAST--EAHGR--AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869 (2622)
Q Consensus 1804 ~~~~~~~~~~~~~---------~-~~dde~~~~--~~~~~--~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~ 1869 (2622)
..++-..-....+ . .+++...+. .-.+. .-.+..|+.+...+++.+...+....+.||+.|++..+
T Consensus 550 ~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 550 SRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3332110000000 0 000000000 00000 00234456677778888777888899999999999999
Q ss_pred HHHhh---ChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCChhhHHh
Q 000050 1870 TIVAN---TPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQG 1942 (2622)
Q Consensus 1870 ~l~~~---~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~ 1942 (2622)
.++.. ++. ...+..+-..+.+.+....+++--....++..+....+-. -...++|.+...|+++...+..+
T Consensus 630 sl~~vlk~c~e--~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~n 707 (975)
T COG5181 630 SLAKVLKACGE--TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVAN 707 (975)
T ss_pred HHHHHHHhcch--HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhh
Confidence 88763 332 1345556666778888888888777777777777665543 23355566666666677777777
Q ss_pred HHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCch----
Q 000050 1943 VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS---- 2018 (2622)
Q Consensus 1943 a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~---- 2018 (2622)
....++.|....+...-...+..+.-.+...|...+.++|.+|..+||-+.+..|+ .+++..|++.|+..+-+
T Consensus 708 ti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP---qdvL~~LlnnLkvqeRq~Rvc 784 (975)
T COG5181 708 TIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP---QDVLDILLNNLKVQERQQRVC 784 (975)
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH---HHHHHHHHhcchHHHHHhhhh
Confidence 77777777655433222334455666677778888999999999999999999998 57888899988765532
Q ss_pred -hHHHHHHHHHHhhhccccccchhhhhhcCCC--chHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHH
Q 000050 2019 -DTALDGLKQILSVRTTAVLPHILPKLVHLPL--SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK 2095 (2622)
Q Consensus 2019 -~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~--~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~ 2095 (2622)
..++....+.|+ .-.++|.++....+|.. +....+|+..+.+..|.+-..|+..|.|.|-+++.|.|+.-|+.+.
T Consensus 785 tsvaI~iVae~cg--pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~ 862 (975)
T COG5181 785 TSVAISIVAEYCG--PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAM 862 (975)
T ss_pred hhhhhhhhHhhcC--chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHH
Confidence 234444444443 23466777766666543 3345678888888889999999999999999999999999999999
Q ss_pred HHHHHhhhccCh----hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHH
Q 000050 2096 EAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA 2171 (2622)
Q Consensus 2096 ~al~~l~~~~~~----~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~ 2171 (2622)
..+.+++.++.. +..-.+++.|...+-++.|.+.++.-.++..|....+. ..++..+.+-+=.+...||+
T Consensus 863 nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~------g~~m~Yv~qGLFHPs~~VRk 936 (975)
T COG5181 863 NVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS------GAMMKYVQQGLFHPSSTVRK 936 (975)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc------HHHHHHHHHhccCchHHHHH
Confidence 999999887643 44667888888888899999999999999888765432 23334444444578889999
Q ss_pred HHHHHHHHHH
Q 000050 2172 AAWEALSRVV 2181 (2622)
Q Consensus 2172 ~a~~aL~~l~ 2181 (2622)
.-|..++.+-
T Consensus 937 ~ywtvyn~my 946 (975)
T COG5181 937 RYWTVYNIMY 946 (975)
T ss_pred HHHHHHhhhh
Confidence 9988877664
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-17 Score=213.25 Aligned_cols=557 Identities=21% Similarity=0.250 Sum_probs=405.3
Q ss_pred CChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHc
Q 000050 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2622)
Q Consensus 1350 ~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l 1429 (2622)
++.+.|.....-+..+....|.... ...++|++.+.+ +. +..+...+..-++.+....| ...|...++|.+....
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~ 168 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLA 168 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhh
Confidence 4567788888888888877777655 347999999998 54 56677666666666554433 1223334566666677
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHH-HHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhh
Q 000050 1430 SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ-SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEV 1507 (2622)
Q Consensus 1430 ~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~-~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~ 1507 (2622)
.+....||+++.+.+..+...++.......+-+++..+...+|+..+ .+|.+++...-..+ ..+. .++-|...++
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk---~elr~~~~~l 245 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK---RELRPIVQSL 245 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH---HHHHHHHHhh
Confidence 78888999999999999999988887766666777777777887644 45666666655444 3343 3444556678
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCChhH-HhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc
Q 000050 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2622)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~ 1586 (2622)
.+|..+.||.+++.-++.+++.+.+... ..++|. +.....
T Consensus 246 c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~---------------------------------------~~~L~~ 286 (759)
T KOG0211|consen 246 CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPT---------------------------------------LIQLLR 286 (759)
T ss_pred ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHH---------------------------------------Hhhhhh
Confidence 8999999999999999999988764221 233333 334444
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHH
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDA 1665 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-~~~~ll~~Ll~~ 1665 (2622)
|....+|..|...+.++...+..+. +....+.+.+.+...|++|.+|.........+...+|++ ......+.....
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l 363 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNL 363 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHH
Confidence 4445677777777777776654421 445668888999999999999999999999999999986 345556666666
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHhchh-----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1666 LKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1666 L~~~~~~~~r~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
++... ...|...+.-..++......+ ....++|.+...+.+.+.++|.+.......+...+|. ..-+..+.|
T Consensus 364 ~~~~~-~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp 440 (759)
T KOG0211|consen 364 LKDEE-WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLP 440 (759)
T ss_pred hcchh-hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccCh
Confidence 65543 445656655566665555422 2355678888889999999999888877777777773 344666889
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHhh---hc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccccc
Q 000050 1741 AILDGLADENESVRDAALGAGHVLVEHYA---TT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2622)
Q Consensus 1741 ~ll~~L~d~~~~VR~~al~al~~lv~~~~---~~-~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~ 1816 (2622)
.....++|+...||......+........ -. ..+.++|.+.....|..||+|.+.++.+..++.+
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q----------- 509 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ----------- 509 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh-----------
Confidence 99999999999999888765544333222 22 2345888888888888999999988888776532
Q ss_pred CCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc
Q 000050 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1895 (2622)
Q Consensus 1817 ~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~-~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~ 1895 (2622)
+|.+++++.+..++.. +.|....+|++|...+..++..++. .-....+++.++....
T Consensus 510 --------------------~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 510 --------------------LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDL 567 (759)
T ss_pred --------------------hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhc
Confidence 2333444444444443 5777889999999999999998772 2344556666666667
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHh
Q 000050 1896 SSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2622)
Q Consensus 1896 s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2622)
++++..|.+...++..++..+|.. ....++|.+.....|+.+++|.+++..+..++......... ..+.|.+....
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L~ 644 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETLS 644 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHhc
Confidence 778999999999999999999988 46899999999999999999999999999988766654443 45666666777
Q ss_pred cCCcHHHHHHHHHHHHHHHHH
Q 000050 1975 CDSILEVRESAGLAFSTLFKS 1995 (2622)
Q Consensus 1975 ~d~d~~VR~~A~~al~~l~~~ 1995 (2622)
.|++.+||..|..+++.+...
T Consensus 645 ~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred cCcccchhHHHHHHHHHHHHH
Confidence 799999999999998887543
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.5e-13 Score=158.83 Aligned_cols=464 Identities=16% Similarity=0.195 Sum_probs=340.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHH-HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHH
Q 000050 1890 LISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2622)
Q Consensus 1890 L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp-~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~ 1964 (2622)
+.+.+.+.-++.|..|+.-+..+++.+-.. ....++. ...+...+++...|.|...+++...-..|.+... |+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~ 83 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLE 83 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHH
Confidence 456677888999999999999888865332 2344444 3334556778888889999998876667766655 999
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhh
Q 000050 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 2044 (2622)
Q Consensus 1965 ~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L 2044 (2622)
.+++.+..++.|+|..||..|++.+..+.+
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaK-------------------------------------------------- 113 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAK-------------------------------------------------- 113 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999999887765543
Q ss_pred hcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccC-----hhcHHHHHHHHHh
Q 000050 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID-----EEGVESLVSELLK 2119 (2622)
Q Consensus 2045 ~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~-----~~~l~~ll~~Ll~ 2119 (2622)
++..++.+|++.|+..+.+...|.+..+|..+ +-++.++..+. .-+++.++|.|-.
T Consensus 114 ------------------v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~e 174 (675)
T KOG0212|consen 114 ------------------VAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRE 174 (675)
T ss_pred ------------------HhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHH
Confidence 22334455667777777777777777776543 44555554331 1248999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHH
Q 000050 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 2199 (2622)
Q Consensus 2120 ~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~ 2199 (2622)
++...++.+|+.....+..+-...+.++..|++.++..|+..+.|+..+||..+-.+++.+.......-
T Consensus 175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P----------- 243 (675)
T KOG0212|consen 175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP----------- 243 (675)
T ss_pred HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc-----------
Confidence 999999999999999999998888889999999999999999999999999998888888765432110
Q ss_pred HhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHh
Q 000050 2200 ISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279 (2622)
Q Consensus 2200 l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~ 2279 (2622)
+ ++ .....++++...+.++.++.+..|...|.++++-.| ..+-+|.+.+.+.++..
T Consensus 244 -----~--------------s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 244 -----S--------------SM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILPC 299 (675)
T ss_pred -----c--------------cc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcccC
Confidence 0 00 112345666667778889999999999999997766 78889999998888888
Q ss_pred hcCCCCHhhHHHHHHHHHHHHHhcCCCc-c--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc-----cChhhHH
Q 000050 2280 IGDRFPWQVKSAILSTLSIIIRKGGIAL-K--PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-----TRVDPLV 2351 (2622)
Q Consensus 2280 l~~~~~~~vk~~al~~L~~L~~~~~~~l-~--p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~-----~~~~~ll 2351 (2622)
+.+..+..++..+...-+.+..-.+... + --+..+++++.+.+.+..++.|..+...+-.+-.-. .+.++++
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if 379 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIF 379 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHH
Confidence 8876554566666555544443322211 1 112468889999999999999999999998884322 2578899
Q ss_pred HHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Q 000050 2352 GDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 2431 (2622)
Q Consensus 2352 ~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l 2431 (2622)
+.|+..+.+++..|-...+.-+.+++..... ..+++-+.++| +++....--++.-+.-.+..+|..+.++.+...+
T Consensus 380 ~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL-~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~ 455 (675)
T KOG0212|consen 380 LTLLKTLSDRSDEVVLLALSLLASICSSSNS---PNLRKFLLSLL-EMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSI 455 (675)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHHHhcCccc---ccHHHHHHHHH-HHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHH
Confidence 9999999988888888889999998875433 24555555555 4444444445666777888999998888777777
Q ss_pred HHHHhhcCCCCchhhHhHHHHHHHHHhhCCccc
Q 000050 2432 QELLNLASSPSWAARHGSVLVFATFLRHNPSAI 2464 (2622)
Q Consensus 2432 ~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i 2464 (2622)
..++.+..+-+ ....++.+|+.++-.+|+..
T Consensus 456 a~ILe~e~nl~--FAstMV~~Ln~iLlTStELf 486 (675)
T KOG0212|consen 456 ADILEREENLK--FASTMVQALNTILLTSTELF 486 (675)
T ss_pred HHHHhccccch--HHHHHHHHHHhhhcccHHHH
Confidence 77776533333 24457888888887777654
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-13 Score=182.11 Aligned_cols=530 Identities=18% Similarity=0.223 Sum_probs=378.4
Q ss_pred hhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcC-CCCHHHHHHHHhhhHhhHhh
Q 000050 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQS 1330 (2622)
Q Consensus 1252 ~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~-~~~~~Vq~~a~~~L~~lv~~ 1330 (2622)
...++|.+.+... ..+++......-+|.+..+. .-+....++...++.+. +....||..+++++......
T Consensus 119 r~~lipf~~e~~~-------~~dev~~~~a~~~~~~~~~v--~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~ 189 (759)
T KOG0211|consen 119 RLELIPFLTEAED-------DEDEVLLDLAEQLGTFLPDV--GGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG 189 (759)
T ss_pred hhhhhhHHHHhcc-------chhHHHHHHHHHhcccchhc--cchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888772 24566666655666555432 12333333333344333 33456899999998777666
Q ss_pred hccch-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000050 1331 MQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2622)
Q Consensus 1331 ~~~~~-~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~ 1409 (2622)
..+.. .+.+..++..+...+-...|..++..++.......+..++ ..+.+...+.+++. ++++|.++..-++.++..
T Consensus 190 ~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk-~elr~~~~~lc~d~-~~~Vr~~~a~~l~~~a~~ 267 (759)
T KOG0211|consen 190 LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK-RELRPIVQSLCQDD-TPMVRRAVASNLGNIAKV 267 (759)
T ss_pred cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH-HHHHHHHHhhcccc-chhhHHHHHhhhHHHHHH
Confidence 54432 3555567777766632244555555566666555555554 36777788888887 799999999999999988
Q ss_pred hcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHh
Q 000050 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2622)
Q Consensus 1410 ~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2622)
.+. ..-...++|.+.....|....||.+|.+++..++..+... ..+.+.+.+++..+++.|+++.........+..
T Consensus 268 ~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 268 LES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSS 345 (759)
T ss_pred HHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHH
Confidence 775 3334467788888889999999999999999999977665 458889999999999999999877776666554
Q ss_pred hCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC---hh--HHhHHHHHHhhcCCCChhHHHHHHHHHh
Q 000050 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE--IASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2622)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~--i~~ilp~Ll~~l~d~~~~~r~al~~L~~ 1562 (2622)
....+ ..-+..++.....++|...++|.++..-.+.+...... +. .+.++|.+.....|.+..+|.+....+.
T Consensus 346 ~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 346 AVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred Hhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 32222 22356678888899999999999999888888876652 22 2567899999999999999855432221
Q ss_pred c--cccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHH
Q 000050 1563 T--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2622)
Q Consensus 1563 ~--~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~ 1640 (2622)
. ...+ .+.....+.|.+...++|..+.+|....+.+..+-.. .+..-+..+.+.++|.+..+-.|..|++|.+..
T Consensus 424 ~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v-~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 424 GLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV-NDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred ccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc-cCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 0 1111 2345556788888899999999998888766444332 332334556788899999998899999999999
Q ss_pred HHHHHHHhhhCCCCchhhHH-HHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH-HHhHhHHHHHhccCCChhhHHHHHH
Q 000050 1641 RAIGSLIRGMGEENFPDLVS-WLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDGYLT 1718 (2622)
Q Consensus 1641 ~aL~~L~~~~g~~~~~~ll~-~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~-l~~llp~l~~~l~~~~~~vR~~al~ 1718 (2622)
..+..++...|..++.+-+. .++..+.+ .....|.+++..+..++..+|.+. ...++|.++....++++..|...+.
T Consensus 501 ~~ip~la~q~~~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 501 EYIPQLALQLGVEFFDEKLAELLRTWLPD-HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHH
Confidence 99999999988665554433 33333333 335688899999999999999543 2678888888888888999999999
Q ss_pred HHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhh-hHHHHhhccCCCchHHHHHHHH
Q 000050 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-LLPAVEDGIFNDNWRIRQSSVE 1797 (2622)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~-llp~l~~~l~d~~~rvR~~a~~ 1797 (2622)
++..++..+|..+ +.+.++|.+.....|..++||..+++.+..++..+.....+. +.|.+.....|.+-.+|..+..
T Consensus 580 si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~ 657 (759)
T KOG0211|consen 580 SIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAIL 657 (759)
T ss_pred HHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 9999999999864 457799999999999999999999999999988776654443 6666655554544334444444
Q ss_pred HHHHH
Q 000050 1798 LLGDL 1802 (2622)
Q Consensus 1798 ll~~l 1802 (2622)
..+.+
T Consensus 658 a~~~i 662 (759)
T KOG0211|consen 658 AFGSI 662 (759)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-08 Score=132.14 Aligned_cols=645 Identities=18% Similarity=0.210 Sum_probs=351.6
Q ss_pred CcchHHHHHHHHHHcCCCCHHHH--HHHHhhhHhhHhhhccc--------hHHHHHHHHHHHhcC-----CChHHHHHHH
Q 000050 1295 DPKVHAVVDKLLDVLNTPSEAVQ--RAVSSCLSPLMQSMQDE--------APTLVSRLLDQLMKS-----DKYGERRGAA 1359 (2622)
Q Consensus 1295 ~~~v~~i~~~L~~~l~~~~~~Vq--~~a~~~L~~lv~~~~~~--------~~~~i~~Ll~~L~~~-----~~~~~r~~Aa 1359 (2622)
||.++.+++.+...+....-.++ ..+.+-+..+++..+.+ .-..++.+++.|..+ .+|..|..-.
T Consensus 67 Dp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilL 146 (1133)
T KOG1943|consen 67 DPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILL 146 (1133)
T ss_pred cchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 66667777777666655443332 23334444444332211 123556666666522 2578888777
Q ss_pred HHHHHHHhhhC-ccch------hh----hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 000050 1360 FGLAGVVKGFG-ISSL------KK----YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2622)
Q Consensus 1360 ~~L~~l~~~lg-~~~l------~~----~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~ 1428 (2622)
.-|.-++...- .+.+ .+ ..++.+...++... +..|.+|...+..+... ....+++...+..++.+
T Consensus 147 lWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~--~~~r~~aalllsk~~sR--~D~~~~~~~Fl~~~l~~ 222 (1133)
T KOG1943|consen 147 LWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISS--GILRRSAALLLSKLFSR--TDVKDLLLSFLDWLLDC 222 (1133)
T ss_pred HHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHccc--ccHHHHHHHHHHHhhcc
Confidence 77777765421 1111 11 24555555566554 35555665555444421 12334455555555555
Q ss_pred cCCCCHH--HHHHHHHHHHHHHHhhcH---------------------H---hHHhhHHHHHhhc-------cCCChhhH
Q 000050 1429 FSDQVVA--VREAAECAARAMMSQLSA---------------------Q---GVKLVLPSLLKGL-------EDKAWRTK 1475 (2622)
Q Consensus 1429 l~D~~~~--VR~aa~~al~~i~~~l~~---------------------~---~v~~ilp~Ll~~L-------~~~~w~~r 1475 (2622)
-.+..++ +......++..+....+. . ...++++.+++.+ .+.+|+..
T Consensus 223 ~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~ 302 (1133)
T KOG1943|consen 223 PSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYS 302 (1133)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhh
Confidence 5544333 222233333333332211 1 1355677777743 35789988
Q ss_pred HHHHHHHHHHHhh--Cc-------------hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHH
Q 000050 1476 QSSVQLLGAMAYC--AP-------------QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2622)
Q Consensus 1476 ~~a~~~L~~la~~--~p-------------~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp 1540 (2622)
+|.-.+.+++-.. +| +.....+..++..|+..++|.+..||..|++.++.+....+..-.+..+.
T Consensus 303 rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~ 382 (1133)
T KOG1943|consen 303 RGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIG 382 (1133)
T ss_pred cccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHH
Confidence 8876666554321 11 11223345677788889999999999999999999999887333355555
Q ss_pred HHHhhcC---CCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc--------CCCHHHHHHHHHHHHHhhhhcCC
Q 000050 1541 TLLMGLT---DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR--------ERSAETKKKAAQIVGNMCSLVTE 1609 (2622)
Q Consensus 1541 ~Ll~~l~---d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~--------d~~~~vr~~a~~~l~~l~~~~~~ 1609 (2622)
..++.+. ++..-. .++-++.....-+-+-...+..++|.+..++. .....+|..|+-++-.+++.. .
T Consensus 383 svid~~~p~e~~~aWH-gacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray-s 460 (1133)
T KOG1943|consen 383 SVIDLFNPAEDDSAWH-GACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY-S 460 (1133)
T ss_pred HHHHhcCcCCchhHHH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcC-C
Confidence 5555332 121111 22222222112222334566789999998873 235689999999999998874 6
Q ss_pred CCcccchHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 000050 1610 PKDMIPYIGLLLPEVK-KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1610 ~~~l~~~l~~ll~~L~-~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~ 1688 (2622)
+.++.||+..+.+.|. ..+-|+.-.+|.+|..|+-..+...|. ++.=++.+ ... +.-+...|......++..+.
T Consensus 461 ~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n--~p~Gi~Li-s~~-dy~sV~~rsNcy~~l~~~ia- 535 (1133)
T KOG1943|consen 461 PSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGN--FPHGISLI-STI-DYFSVTNRSNCYLDLCVSIA- 535 (1133)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCC--CCCchhhh-hhc-chhhhhhhhhHHHHHhHHHH-
Confidence 6889999998877665 456799999999999988877665442 22222211 000 11111122222111221111
Q ss_pred hchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhh-cCCCChHHHHHHHHHHHHHHHH
Q 000050 1689 LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG-LADENESVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1689 ~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~-L~d~~~~VR~~al~al~~lv~~ 1767 (2622)
.|..|...++..++.. +.+.+..+|+.+..++..+...
T Consensus 536 -----------------------------------------~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 536 -----------------------------------------EFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred -----------------------------------------hhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 2334555555554443 6677777777777777776655
Q ss_pred hhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHH
Q 000050 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2622)
Q Consensus 1768 ~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~ 1847 (2622)
.++...+..+|.+.+.....+-..|.++....|+++.......+ +. ....+ ..+. ....+++
T Consensus 575 ~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~-~~--------~~l~e---~~i~------~l~~ii~ 636 (1133)
T KOG1943|consen 575 EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEP-VI--------KGLDE---NRIA------GLLSIIP 636 (1133)
T ss_pred hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhh-hh--------hhhHH---HHhh------hhhhhcc
Confidence 55555555666666666566666666666666666543221100 00 00000 0000 0111233
Q ss_pred HHHHhccCC--CHHHHHHHHHHHHHHHhhChhhHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--ccchhh
Q 000050 1848 ALYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVRKL--GERVLP 1922 (2622)
Q Consensus 1848 ~L~~~~~D~--~~~VR~aA~~~l~~l~~~~p~~l~~~l~~-ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~--~~~~l~ 1922 (2622)
.++...-+. ....|.+....+..+..+.++.+..++-. ....+.+.+.+++ .+|..+..++++++... ++....
T Consensus 637 ~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~ 715 (1133)
T KOG1943|consen 637 PICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE 715 (1133)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh
Confidence 333221111 14567777777777766666544444433 3334444455556 89999999999998654 222111
Q ss_pred -hHHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhHHHhH-HhHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhCh
Q 000050 1923 -SIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1923 -~llp~L~~~L~d~-~~~vR~~a~~~L~~li~~~~~~~l~~~l-~~ll~~l~~~L-~d~d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
.++......+.+. +..+|++...+++.+- .+.+.-++ +.+...+.... .|..++.|.....++..+++..+.
T Consensus 716 ~~li~~~ls~~~~~~~~~~r~g~~lal~~lp----~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~ 791 (1133)
T KOG1943|consen 716 APLITRYLSRLTKCSEERIRRGLILALGVLP----SELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTS 791 (1133)
T ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHccCc----HHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 2333334444444 6778888877776542 22232232 23333333333 244788899999999998887762
Q ss_pred ----hhhhhhHHHHHHhccc
Q 000050 1999 ----QAIDEIVPTLLHALED 2014 (2622)
Q Consensus 1999 ----~~~~~ilp~Ll~~L~~ 2014 (2622)
....++...|++.+.+
T Consensus 792 ~~~~~~~~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 792 LLFSESIEKFRETLLNALDD 811 (1133)
T ss_pred hhccccHHHHHHHHHHHHhh
Confidence 3456677777777754
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-11 Score=148.75 Aligned_cols=419 Identities=19% Similarity=0.238 Sum_probs=300.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHh
Q 000050 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEH 1696 (2622)
Q Consensus 1624 L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~ 1696 (2622)
+.+.+.|...+-|+.|+--+..+++.+-.. .+..++..+............|.|...+++.++-++|.+ +.+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 445667888889999999999998865432 345566655554444333445678888888888888876 4788
Q ss_pred HhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhh
Q 000050 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776 (2622)
Q Consensus 1697 llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~l 1776 (2622)
++|.++..+++++..+|-.++..+..+++...+++.+|.+.+...+.+..+|.+..||.+|- .+.++++
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLik---------- 153 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIK---------- 153 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHH----------
Confidence 99999999999999999999999999999999999999999999999999999998886651 1111111
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCC
Q 000050 1777 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2622)
Q Consensus 1777 lp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~ 1856 (2622)
++. .+++..++ .+.+++.+-....+.
T Consensus 154 ------------------------dIV--------------te~~~tFs----------------L~~~ipLL~eriy~~ 179 (675)
T KOG0212|consen 154 ------------------------DIV--------------TESASTFS----------------LPEFIPLLRERIYVI 179 (675)
T ss_pred ------------------------Hhc--------------cccccccC----------------HHHHHHHHHHHHhcC
Confidence 110 00010111 122333333344667
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhc
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGL 1932 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L 1932 (2622)
++.+|+.-+.-+..+-...+..+-.|+|.+++.+++++.+++.++|..+-.+++++....... -.+.+++++...+
T Consensus 180 n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l 259 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL 259 (675)
T ss_pred CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc
Confidence 888999888888887777778888999999999999999999999999999999998776433 2578889999999
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhChhhh------hhhH
Q 000050 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQAI------DEIV 2005 (2622)
Q Consensus 1933 ~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~-~VR~~A~~al~~l~~~~g~~~~------~~il 2005 (2622)
.++++..+..+..|+.+++.-. +.++..++..++..+.+++.|.++ ..++.|...-+.+...++.... ..++
T Consensus 260 ~ss~~~iq~~al~Wi~efV~i~-g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii 338 (675)
T KOG0212|consen 260 QSSEPEIQLKALTWIQEFVKIP-GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSII 338 (675)
T ss_pred cCCcHHHHHHHHHHHHHHhcCC-CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHH
Confidence 9999999999999999987654 456778899999999999988776 4777665554445444333211 1233
Q ss_pred HHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHH---HHhCCChhhhHhhhHHHHHHh
Q 000050 2006 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALA---EVAGPGLNFHLGTILPALLSA 2082 (2622)
Q Consensus 2006 p~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa---~~~g~~l~~~l~~il~~Ll~~ 2082 (2622)
..+...+.++.. ..+..++..+. ..++..+..|...+++.|++.
T Consensus 339 ~vl~~~l~~~~~---------------------------------~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 339 EVLTKYLSDDRE---------------------------------ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHhhcchH---------------------------------HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHh
Confidence 333333322211 11233333333 346778888999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 000050 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141 (2622)
Q Consensus 2083 l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~ 2141 (2622)
+.|.+.++-..+...++.++.+-...+...++..|++..+.+..-.+.-+...+..+|.
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 99999999888888888888766555677777778877766554444444444555543
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-08 Score=130.65 Aligned_cols=690 Identities=17% Similarity=0.165 Sum_probs=374.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHH---HHHHHHhccchhhhHHH
Q 000050 1854 SDVSLSVRQAALHVWKTIVANTPKTLK---EIMPVLMNTLISSLASS-SSERRQVAGRAL---GELVRKLGERVLPSIIP 1926 (2622)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~p~~l~---~~l~~ll~~L~~~L~s~-~~~~R~~A~~~L---~~lv~~~~~~~l~~llp 1926 (2622)
-+..+.||.+|.+.+..+..+.|-... +-........+..+.+. ....-....+.| ..++...+......+-.
T Consensus 148 ~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e 227 (1176)
T KOG1248|consen 148 AHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCE 227 (1176)
T ss_pred hcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 345667888888888777765442211 11111111122222111 112222222222 22232222223334444
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC-cHH-------HHHHHHHHHHHHHHHhCh
Q 000050 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILE-------VRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~-------VR~~A~~al~~l~~~~g~ 1998 (2622)
.+...+...+..++..+.+++..+.....+..-......++..++..--+. |.. |-..|..++..+....+.
T Consensus 228 ~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~ 307 (1176)
T KOG1248|consen 228 VLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKAL 307 (1176)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 455555566777777888888777766554333334445555554432221 222 222233334443333333
Q ss_pred hhhhhhHHHHHHhcccCCch--hHHHHHHHHHHhhhccccccch----hhhhhcCC---CchHHHHHHHHHHHHhCCChh
Q 000050 1999 QAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHI----LPKLVHLP---LSAFNAHALGALAEVAGPGLN 2069 (2622)
Q Consensus 1999 ~~~~~ilp~Ll~~L~~~~~~--~~aL~~L~~il~~~~~~ilp~L----ip~L~~~~---~~~~~~~aL~sLa~~~g~~l~ 2069 (2622)
...+.+++.+...+.++... ..+-+.+.+++..... +.+.+ +..+.+-+ ...+..+++..+.+.+|....
T Consensus 308 ~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~ 386 (1176)
T KOG1248|consen 308 QALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSG 386 (1176)
T ss_pred HhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 33444555555533333221 2233334443321100 11111 11111111 111344677777788898888
Q ss_pred hhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhc-ccccc
Q 000050 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS-KLYLV 2148 (2622)
Q Consensus 2070 ~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~-~~~l~ 2148 (2622)
|++...+..+-..-.+++..-+...-.|++.-+..+|++.+-.++|.=+ -.+.....|. ++|..+-.+. +..+.
T Consensus 387 ~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl--~~~s~~~~Rs---WLLPvLR~~i~~A~La 461 (1176)
T KOG1248|consen 387 PELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL--HAESLSFTRS---WLLPVLRDYIIGASLA 461 (1176)
T ss_pred HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc--cccccccchh---HhHHHHHHhhccCcHH
Confidence 8888777777664444444444466678888888888887666666443 1222223333 3444333221 12222
Q ss_pred ccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccch-hhHHHHHHHHHhhchhhhhhhhcCCccccccCCC-CcC
Q 000050 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ-PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL-PKA 2226 (2622)
Q Consensus 2149 ~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l-~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~-~~~ 2226 (2622)
-|...+++....+... - +....... ..+...+...+- ..+||||. |-.
T Consensus 462 ~F~~~ivpla~sl~~K-~---------------~~l~~~~~~~~~~~tl~~QLW--------------~LLP~FC~~P~D 511 (1176)
T KOG1248|consen 462 FFTEYIVPLAMSLQLK-A---------------KKLKEAGSQVSLYDTLVDQLW--------------SLLPGFCNYPVD 511 (1176)
T ss_pred HHHHHHHHHHHHHHHH-H---------------HhhhhccCcHHHHHHHHHHHH--------------HhChhhhCCCcc
Confidence 2222232222211100 0 00000000 012222222221 24899984 544
Q ss_pred chh----hHHHHHHHHccCCHHHHHHHHHHHHHHHhhc----Chhh----hhhhhhhhhHHHHHhhcCC-----CCHhhH
Q 000050 2227 LQP----LLPIFLQGLISGSAELREQAALGLGELIEVT----SEQS----LKEFVIPITGPLIRIIGDR-----FPWQVK 2289 (2622)
Q Consensus 2227 l~~----ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~----~~~~----l~p~v~~i~~~Li~~l~~~-----~~~~vk 2289 (2622)
+.. +.|++...+.+.. +.|...+.+|..++... .... +..+...+.+.+.++-... .....+
T Consensus 512 l~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~ 590 (1176)
T KOG1248|consen 512 LAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASR 590 (1176)
T ss_pred HHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHH
Confidence 433 6677777776655 99999999999999774 2222 3333444445555544322 223344
Q ss_pred HHHHHHHH-HHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-Hhcc-----cChhhHHHHHHHhhhcC-
Q 000050 2290 SAILSTLS-IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL-SALS-----TRVDPLVGDLLSSLQVS- 2361 (2622)
Q Consensus 2290 ~~al~~L~-~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L-~~~~-----~~~~~ll~~Ll~~l~~~- 2361 (2622)
...|.... ......+..+ ...|....-....+.++.++.--...+-.+ +.+. ..+..++ .+.....+.
T Consensus 591 ~~~L~~i~~~~~~~t~~dv---~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~ 666 (1176)
T KOG1248|consen 591 STVLEIIRVDYFTVTPTDV---VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSS 666 (1176)
T ss_pred HHHHHHHHHHHhhcccHHH---HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccc
Confidence 44454444 4444444322 223333333334444445544433333333 2221 2344444 444544443
Q ss_pred CHhHHHHHHHHHHHHHhh-cCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchH---HHHHHHHHHhh
Q 000050 2362 DAGIREAILTALKGVLKH-AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ---LADLLQELLNL 2437 (2622)
Q Consensus 2362 d~~vr~~~l~AL~~vi~~-~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~---~~~~l~~ll~~ 2437 (2622)
+..+|.....-|.+++.. .|..........|.+.|.+.+++.....+.....|+..+.+..+.+. +...+++++-.
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 578898889999998876 23333456677888888888888888899999999999999998433 34455553322
Q ss_pred cCCCCchhhHhHHHHHHHHHhhCCccccC----ChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchh
Q 000050 2438 ASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV 2513 (2622)
Q Consensus 2438 ~~~~~~~~r~~~~~~L~~~l~~~~~~i~~----~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~ 2513 (2622)
.+..+...|+.+..+|..+...+...... .....+++..|..++..+....+..-+.|++.++..+... ..+..
T Consensus 747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~--ld~~~ 824 (1176)
T KOG1248|consen 747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI--LDDET 824 (1176)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc--ccHHH
Confidence 35666667777777777776321111111 2245677777777776676666666688888887766432 23356
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchh-hhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHHhc
Q 000050 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSA-IMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586 (2622)
Q Consensus 2514 l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~-v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~ 2586 (2622)
+..++..+...|.+++.+++.+|+..++.+...-|+. +.+|++.++|.++..+++....+|.+.-.=+-.+.+
T Consensus 825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 7778888888899999999999999999999999988 699999999999999999999998887644444433
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-07 Score=124.45 Aligned_cols=756 Identities=17% Similarity=0.169 Sum_probs=422.4
Q ss_pred chHHHHHHHHHHcC--CCCHHHHHHHHhhhHhhHhhhccch------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 000050 1297 KVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDEA------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG 1368 (2622)
Q Consensus 1297 ~v~~i~~~L~~~l~--~~~~~Vq~~a~~~L~~lv~~~~~~~------~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~ 1368 (2622)
+...++..|...+. ..+..|...+..||..++..-.... ...+..++.... ++....|..|..+++.++.+
T Consensus 90 kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~-h~~pkvRk~a~~~i~~VL~~ 168 (1176)
T KOG1248|consen 90 KFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA-HKKPKVRKAAQRGIAAVLKG 168 (1176)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcC
Confidence 45556666666666 5677899999999999987632211 223333333333 33457899999999999986
Q ss_pred hCccch--h--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000050 1369 FGISSL--K--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2622)
Q Consensus 1369 lg~~~l--~--~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2622)
.+-... . ...+..++.+.++....+......+..+..|-..+...-.+.+..+...++..++..+..|+-.+..++
T Consensus 169 p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l 248 (1176)
T KOG1248|consen 169 PPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCL 248 (1176)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 431111 1 012334444444443332333333333333333344433577888999999999999999999999999
Q ss_pred HHHHHhhcHH----hHHhhHHHHHhhccC-CChhhHHHHHHH----HHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHH
Q 000050 1445 RAMMSQLSAQ----GVKLVLPSLLKGLED-KAWRTKQSSVQL----LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKV 1515 (2622)
Q Consensus 1445 ~~i~~~l~~~----~v~~ilp~Ll~~L~~-~~w~~r~~a~~~----L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~V 1515 (2622)
..++..-++. ....++..+.+.--+ .+...-.+-+.+ ...++...++..-..+|.+++.++.++...++++
T Consensus 249 ~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~ 328 (1176)
T KOG1248|consen 249 HSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEEL 328 (1176)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHH
Confidence 9988865553 123444444332111 111111111222 2233334444445567888888888888888888
Q ss_pred HHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHH
Q 000050 1516 QSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2622)
Q Consensus 1516 R~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~ 1595 (2622)
-.+|-+++..+.+.... +.+.+... .+..+++-+...+-+.
T Consensus 329 ~q~a~q~l~~il~~sv~-----~~~~~c~~----------------------------------~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVT-----VIDALCSK----------------------------------QLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHHHHHhcccCc-----ccHHHHHH----------------------------------HHHHHHcchHHHHHHH
Confidence 88888888888754321 11111110 1112222223345556
Q ss_pred HHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHH
Q 000050 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675 (2622)
Q Consensus 1596 a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r 1675 (2622)
+.+++..+++.+|. ...||+-..+..+...=.+++..-+...-.|+|+-+.++|++.+-.++|.=+ ..+.....|
T Consensus 370 ilqi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl---~~~s~~~~R 444 (1176)
T KOG1248|consen 370 ILQILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL---HAESLSFTR 444 (1176)
T ss_pred HHHHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc---cccccccch
Confidence 67777777777665 4556666666666655556666667788899999999999986655655322 111111112
Q ss_pred HHHHHHHHHHHHHhchhHH-HhHhHHHHHh------ccC---CChhhHHHHHHHHHHhhhhhC--cchhhhHHhHHHHHH
Q 000050 1676 SGAAQGLSEVLAALGTVYF-EHILPDIIRN------CSH---QRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAIL 1743 (2622)
Q Consensus 1676 ~~a~~~L~~i~~~~g~~~l-~~llp~l~~~------l~~---~~~~vR~~al~~l~~L~~~~g--~~f~p~l~~ii~~ll 1743 (2622)
.=..=-|-.-+.+....++ +.++|-..+. +.. .....+.-..++|+-|+..|. .+...-+..+.|.+.
T Consensus 445 sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~ 524 (1176)
T KOG1248|consen 445 SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILG 524 (1176)
T ss_pred hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHH
Confidence 1000001111111111222 3444433322 111 111345556677777777653 455555667778887
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHh-hhc-----------hhhhhHHHHhhccCC------CchHHHHHHHHHHHHHHHH
Q 000050 1744 DGLADENESVRDAALGAGHVLVEHY-ATT-----------SLPLLLPAVEDGIFN------DNWRIRQSSVELLGDLLFK 1805 (2622)
Q Consensus 1744 ~~L~d~~~~VR~~al~al~~lv~~~-~~~-----------~i~~llp~l~~~l~d------~~~rvR~~a~~ll~~ll~~ 1805 (2622)
..+.... +.|.....++..+++.- +.. ...-++|.+.+.-.. +.-+.|..-++.+....++
T Consensus 525 ~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~ 603 (1176)
T KOG1248|consen 525 AALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFT 603 (1176)
T ss_pred HHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhh
Confidence 7777654 88999888888887642 110 111234443322111 1111233222222211111
Q ss_pred hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHH----HHHHHHHHHHHHhhChhhHHH
Q 000050 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV----RQAALHVWKTIVANTPKTLKE 1881 (2622)
Q Consensus 1806 ~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~V----R~aA~~~l~~l~~~~p~~l~~ 1881 (2622)
..+. +....+.+.+| ....|.+..+ +-.-++.+..++...+. .
T Consensus 604 ~t~~------------------dv~~~l~~s~~------------e~as~~~~s~~~~~~~slLdl~~~~a~~~~e---~ 650 (1176)
T KOG1248|consen 604 VTPT------------------DVVGSLKDSAG------------ELASDLDESVASFKTLSLLDLLIALAPVQTE---S 650 (1176)
T ss_pred cccH------------------HHHHHHHHHHH------------hHhccchhhhhhHHHHHHHHHHHhhhccccc---h
Confidence 1000 00011111111 1112221122 22223333333332221 2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----ccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh
Q 000050 1882 IMPVLMNTLISSLASSSSERRQVAGRALGELVRKL-----GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956 (2622)
Q Consensus 1882 ~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~-----~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~ 1956 (2622)
.+..+....-..-++.+..++.-+.+.|.+++..- -......+...+...+++.....+...+.++..+++.++.
T Consensus 651 ~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~ 730 (1176)
T KOG1248|consen 651 QVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA 730 (1176)
T ss_pred hHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH
Confidence 22222222222234557888999999999998761 1123456666677777777777888899999999887773
Q ss_pred hhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCch-hHHHHHHHHHHhhhccc
Q 000050 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTA 2035 (2622)
Q Consensus 1957 ~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-~~aL~~L~~il~~~~~~ 2035 (2622)
....+.+..++.+.-.+.+.+...|..|..++-.+.... ..+.+.++. ...
T Consensus 731 -e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~-------------~~~d~g~e~~~~~-------------- 782 (1176)
T KOG1248|consen 731 -EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQ-------------SSLDDGNEPASAI-------------- 782 (1176)
T ss_pred -HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHH-------------hhhcccccchHHH--------------
Confidence 344566666776666668888888998888776654200 001111110 001
Q ss_pred cccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhc----cChhcHH
Q 000050 2036 VLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV----IDEEGVE 2111 (2622)
Q Consensus 2036 ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~----~~~~~l~ 2111 (2622)
+.+|+. .+...+..+...++...+-++..++.. ++.+.++
T Consensus 783 --------------------------------lnefl~----~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 783 --------------------------------LNEFLS----IISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred --------------------------------HHHHHH----HHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 111222 222222222222332223444444442 3456688
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchh
Q 000050 2112 SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL-YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQP 2190 (2622)
Q Consensus 2112 ~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~-~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~ 2190 (2622)
.+++.+...+.+.++.++.+|+..+..++...+. -+.++.+++++.++.+..|....+|..+..-+..+++..+-+.+.
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999999999999999999877664 478899999999999999999999999999999999988877666
Q ss_pred hHHHH
Q 000050 2191 SYIKV 2195 (2622)
Q Consensus 2191 ~lv~~ 2195 (2622)
.+++.
T Consensus 907 ~~~pe 911 (1176)
T KOG1248|consen 907 SFLPE 911 (1176)
T ss_pred hhCHH
Confidence 65553
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-07 Score=121.91 Aligned_cols=690 Identities=18% Similarity=0.188 Sum_probs=347.8
Q ss_pred CCHHHHHHHHHHHHHHHhh------hCCC-Cc--hhhHHHHHH----HhhhcCChHHHHHHHHHHHHHHHH-hchhHHHh
Q 000050 1631 PIPEVRSVAARAIGSLIRG------MGEE-NF--PDLVSWLLD----ALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEH 1696 (2622)
Q Consensus 1631 ~~~~vR~~a~~aL~~L~~~------~g~~-~~--~~ll~~Ll~----~L~~~~~~~~r~~a~~~L~~i~~~-~g~~~l~~ 1696 (2622)
..|+.|.....-|..++.. +.+. .. ..++..++. .+.... ..|..++..++..... -+.+.+..
T Consensus 137 ~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~--~~r~~aalllsk~~sR~D~~~~~~~ 214 (1133)
T KOG1943|consen 137 SDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG--ILRRSAALLLSKLFSRTDVKDLLLS 214 (1133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHcccccHHHHHHH
Confidence 3567777766666666542 1110 01 112333332 333332 3566677667765532 22333455
Q ss_pred HhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhC-cchhhhHHhHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHHhhhc
Q 000050 1697 ILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATT 1771 (2622)
Q Consensus 1697 llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g-~~f~p~l~~ii~~ll~~L~d~~~--~VR~~al~al~~lv~~~~~~ 1771 (2622)
++..++..-+.. +-..+-+.+.++..+.+... ++..||....+..+-..-..++. -+|+. +-.+++..|-.
T Consensus 215 Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKl----lvKl~QRiGlv 290 (1133)
T KOG1943|consen 215 FLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKL----LVKLVQRIGLV 290 (1133)
T ss_pred HHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHH----HHHHHHHhhhe
Confidence 555555443332 22355677777777776665 45566665555544333222222 12211 11222211100
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHH
Q 000050 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~ 1851 (2622)
. -.-...+||...+.-.+.+.+-..-.+.+.+..+.. +|+|+++. ..+ .+.++..++.
T Consensus 291 ---~------l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~-~d~e~edv----~ei--------vE~vie~Lls 348 (1133)
T KOG1943|consen 291 ---S------LKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQ-DDDEGEDV----PEI--------VEFVIEHLLS 348 (1133)
T ss_pred ---e------cCCCCcchhhhcccchhhhccCccccccCccccccc-cccccccc----HHH--------HHHHHHHHHH
Confidence 0 001346888654433333322100001111222221 22222211 111 2245566677
Q ss_pred hccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHh--ccchhhhHHHHH
Q 000050 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-SERRQVAGRALGELVRKL--GERVLPSIIPIL 1928 (2622)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~-~~~R~~A~~~L~~lv~~~--~~~~l~~llp~L 1928 (2622)
.++|.+..||-.|++.++.+....|..+ ..+.+..++.+++--+ +..=..++-+|+++...- -+..++.++|.+
T Consensus 349 ~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI 425 (1133)
T KOG1943|consen 349 ALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLI 425 (1133)
T ss_pred hccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 7899999999999999999999999544 4455556666554222 223336777778777541 122456888988
Q ss_pred hhhcCC--------CChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1929 SRGLKD--------PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR-TALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1929 ~~~L~d--------~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~-~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
.+++.- ....+|-++|+.+-.+.....+..+.+++..+.+.+. .++-|++-.+|.+|..||-......|..
T Consensus 426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~ 505 (1133)
T KOG1943|consen 426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF 505 (1133)
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC
Confidence 887652 2356899999999999888899999999988888765 4778999999999887765443222211
Q ss_pred hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHH
Q 000050 2000 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPAL 2079 (2622)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~L 2079 (2622)
|.=++.... .+-.+++..+.
T Consensus 506 --------------------------------------p~Gi~Lis~-----~dy~sV~~rsN----------------- 525 (1133)
T KOG1943|consen 506 --------------------------------------PHGISLIST-----IDYFSVTNRSN----------------- 525 (1133)
T ss_pred --------------------------------------CCchhhhhh-----cchhhhhhhhh-----------------
Confidence 000000000 00111111111
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhhccC--hhcHHHHHHHHHhh-cCCCChhHHHHHHHHHHHHHhhccccccccHHHHHH
Q 000050 2080 LSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIS 2156 (2622)
Q Consensus 2080 l~~l~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~-l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~ 2156 (2622)
|...+...+. +.+...+++.++.. +.+-|..+|..++.+|..+....+..+.. ..++
T Consensus 526 -----------------cy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~---~~L~ 585 (1133)
T KOG1943|consen 526 -----------------CYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD---YVLP 585 (1133)
T ss_pred -----------------HHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc---cchh
Confidence 1111111111 12233444444443 55666777777777777766554444332 2345
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHH
Q 000050 2157 TLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQ 2236 (2622)
Q Consensus 2157 ~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~ 2236 (2622)
.++......+...|..+..+.+.++....+-. +.+...-.+. + .++..++|.+..
T Consensus 586 ~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-~~~~~l~e~~------------------i------~~l~~ii~~~~~ 640 (1133)
T KOG1943|consen 586 PLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-PVIKGLDENR------------------I------AGLLSIIPPICD 640 (1133)
T ss_pred hhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-hhhhhhHHHH------------------h------hhhhhhccHHHH
Confidence 55555556677777777777777665543322 0000000000 1 111122232222
Q ss_pred HHcc-CC-HHHHHHHHHHHHHHHhhcChhhhhhhhhh-hhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHH
Q 000050 2237 GLIS-GS-AELREQAALGLGELIEVTSEQSLKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313 (2622)
Q Consensus 2237 ~L~~-~~-~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~ 2313 (2622)
.-.+ |. .-.|...+..+-.+...-. ..+..++.. ....+...+.. +..+|.++..+++.++...-..-.-+...
T Consensus 641 ~~~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~--~n~i~~~av~av~~l~s~y~~~d~~~~~~ 717 (1133)
T KOG1943|consen 641 RYFYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTL--PNQIRDAAVSAVSDLVSTYVKADEGEEAP 717 (1133)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHhcCchhhhH
Confidence 2111 11 1222222222222221111 112222222 11112223322 33799999999999887432111111124
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHH--hcccChhhHH-HHHHHhhhcC-CHhHHHHHHHHHHHHHhhcCCCC----
Q 000050 2314 LQTTFIKCLQDS-TRTVRSSAALALGKLS--ALSTRVDPLV-GDLLSSLQVS-DAGIREAILTALKGVLKHAGKSV---- 2384 (2622)
Q Consensus 2314 L~~~llk~L~d~-~~~vR~~Aa~aLg~L~--~~~~~~~~ll-~~Ll~~l~~~-d~~vr~~~l~AL~~vi~~~g~~~---- 2384 (2622)
+++..+..+.+. ++.+|.-...++|.+- .++.+....+ ..++...-.. ..+-|...+.|+..++...+...
T Consensus 718 li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~ 797 (1133)
T KOG1943|consen 718 LITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSES 797 (1133)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 767777777776 7899999999999873 2233333333 2223332222 46788889999999988766222
Q ss_pred ChHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHHhhcCc------hHHHHHHHHHHhhcCCCCchhhHhHHHHHH
Q 000050 2385 SSAVKIRVYSVLKDLVYHD----DDHVRVSAASILGIMSQCMED------GQLADLLQELLNLASSPSWAARHGSVLVFA 2454 (2622)
Q Consensus 2385 ~~~~~~~i~~~L~~~l~~~----~~~vr~~aa~~Lg~L~~~~~~------~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~ 2454 (2622)
.++++..++..+.+...|. ...+|++|...+..+....+. +.+...+.-+++..-+.-...|.-++.+++
T Consensus 798 ~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~ 877 (1133)
T KOG1943|consen 798 IEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALN 877 (1133)
T ss_pred HHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 2455555555555554443 245999999999888766552 123333333333222222223444455566
Q ss_pred HHHhh
Q 000050 2455 TFLRH 2459 (2622)
Q Consensus 2455 ~~l~~ 2459 (2622)
.++..
T Consensus 878 qi~~~ 882 (1133)
T KOG1943|consen 878 QIVVH 882 (1133)
T ss_pred ceeec
Confidence 66555
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-09 Score=147.56 Aligned_cols=468 Identities=16% Similarity=0.184 Sum_probs=313.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2622)
....+.+.+.++ +...|..+-.++..+...-+ ....-+...+.+-+.++++.+|-.|..++..+. +++-.+.
T Consensus 43 ~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~ 114 (526)
T PF01602_consen 43 LFMEVIKLISSK-DLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEP 114 (526)
T ss_dssp THHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhH
Confidence 344455666655 78888877776666554333 245567788888999999999988888877764 5566688
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC---hhH
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI 1535 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i 1535 (2622)
++|.+.+.+.+++|.+|+.|+.++..+....|+..... +++.+.+++.|+++.|+.+|+.++..+ +.-++ +.+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~ 190 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH
Confidence 88999999999999999999999999998887765432 678888899999999999999999988 21111 223
Q ss_pred HhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhh--hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc
Q 000050 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2622)
Q Consensus 1536 ~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l--~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2622)
..+++.|.+.+.++++-.+ ..++.+.. +.. ...... ..+++.+...+.+.++.+...+...+..+...
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------ 261 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRR--YAP-MEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------ 261 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTT--STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHh--ccc-CChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------
Confidence 5556666666677776655 44554432 211 112222 45778888877777888888887777655331
Q ss_pred ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh
Q 000050 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2622)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~ 1692 (2622)
.+.+..+++.+..++.++++++|..+..++..++....+... .. ...+..+..+++...|..+...+..++. .+
T Consensus 262 -~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~-~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~ 335 (526)
T PF01602_consen 262 -PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQ-SLILFFLLYDDDPSIRKKALDLLYKLAN---ES 335 (526)
T ss_dssp -HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-TH-HHHHHHHHCSSSHHHHHHHHHHHHHH-----HH
T ss_pred -hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hh-hhhhheecCCCChhHHHHHHHHHhhccc---cc
Confidence 125678899999999999999999999999998876522212 11 1223355545556677777766666554 34
Q ss_pred HHHhHhHHHHHhccC-CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc
Q 000050 1693 YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2622)
Q Consensus 1693 ~l~~llp~l~~~l~~-~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~ 1771 (2622)
....+++.+.+.+.+ .+..+|..++..++.++..++..+..|+.. +++.+....+.+...+...+..++...+..
T Consensus 336 n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~----l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 336 NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDT----LLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHH----HHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHH----HHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 556778888888744 477899999999999998887766555544 444444444555544444444444332211
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHH
Q 000050 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~ 1851 (2622)
+. ..+..++.
T Consensus 412 --------------------~~--------------------------------------------------~~l~~L~~ 421 (526)
T PF01602_consen 412 --------------------RE--------------------------------------------------KILKKLIE 421 (526)
T ss_dssp --------------------HH--------------------------------------------------HHHHHHHH
T ss_pred --------------------hH--------------------------------------------------HHHHHHHH
Confidence 00 11111111
Q ss_pred hcc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHh
Q 000050 1852 VRS-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILS 1929 (2622)
Q Consensus 1852 ~~~-D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~ 1929 (2622)
... -.+..++..++-++|......+. .. ..+.++..+.+.+...+..+|.....++.++....+.. ..+.+.+.+.
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~ 499 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLL 499 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHH
Confidence 111 23445677777777776654433 11 56667777777777778889999999999999887653 5578888888
Q ss_pred hhcC--CCChhhHHhHHHHHHH
Q 000050 1930 RGLK--DPSASRRQGVCIGLSE 1949 (2622)
Q Consensus 1930 ~~L~--d~~~~vR~~a~~~L~~ 1949 (2622)
.... +.++++|+.++..+.-
T Consensus 500 ~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 500 SLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp CHHHHS-SSHHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHH
Confidence 8877 7899999999876553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-09 Score=150.36 Aligned_cols=478 Identities=15% Similarity=0.148 Sum_probs=323.0
Q ss_pred ccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000050 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2622)
Q Consensus 1332 ~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~ 1411 (2622)
|.+.......+++.+. +++...++.+...+..+...-+.... -+++.+.+-+.++ |+..|-.|+.+++.+. .
T Consensus 37 G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~---l~~n~l~kdl~~~-n~~~~~lAL~~l~~i~---~ 108 (526)
T PF01602_consen 37 GYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPELLI---LIINSLQKDLNSP-NPYIRGLALRTLSNIR---T 108 (526)
T ss_dssp T---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHH---HHHHHHHHHHCSS-SHHHHHHHHHHHHHH----S
T ss_pred CCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHH---HHHHHHHHhhcCC-CHHHHHHHHhhhhhhc---c
Confidence 4444444445555444 67788888888887777654333111 3667777888887 7889988888777765 2
Q ss_pred ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh-hHHHHHhhccCCChhhHHHHHHHHHHHHhhCc
Q 000050 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2622)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~-ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2622)
......++|.+.+++.|+++.||++|..++..+....+ +.+.. ++|.+.+.+.++++.++.+|+.++..+ ...+
T Consensus 109 ---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 109 ---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH
T ss_pred ---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCc
Confidence 24456788899999999999999999999999987643 34444 789999999999999999999999998 4444
Q ss_pred hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH--HhHHHHHHhhcCCCChhHH-HHHHHHHhccccc
Q 000050 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN 1567 (2622)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~ 1567 (2622)
+.....++.++..+.+.+.+.+|.++....+.+..++..-. ... ..+++.+...+.+.+..+. +|+..+... .+
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l--~~ 260 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKL--SP 260 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS
T ss_pred chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHh--hc
Confidence 44345677788888888899999999988888887764321 122 4577777777765555555 566655431 11
Q ss_pred cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
..+.+..+++.+.+.+.+.++++|..+.+.+..++... .+++......+.-+..+++..+|..+...+..++
T Consensus 261 --~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~------~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 261 --SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN------PPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp --SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC------HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred --chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc------chhhhhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 12256778999999999999999999999999887642 1222222223334444888999999999999888
Q ss_pred hhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhh
Q 000050 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2622)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~ 1727 (2622)
.. +....+++.|...+.+..+...+..++..++.++..... ..+.+++.+++.+...+..+...+...+..+....
T Consensus 333 ~~---~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 333 NE---SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp -H---HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred cc---cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC
Confidence 63 346678888888885443344788888999998887744 34566777788777777888888888888877665
Q ss_pred CcchhhhHHhHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhh-chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH
Q 000050 1728 GVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYAT-TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2622)
Q Consensus 1728 g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~lv~~~~~-~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~ 1805 (2622)
+... ..++..+...+.+ .++.++..+...++........ .....++..+.+...+++..+|...+..+..+...
T Consensus 409 ~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 409 PELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp TTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred hhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 4432 2345555666554 4566777777776665544433 12445666666666677777888888888777644
Q ss_pred hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHH
Q 000050 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLSVRQAALHVWKTI 1871 (2622)
Q Consensus 1806 ~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~--D~~~~VR~aA~~~l~~l 1871 (2622)
.+.. +..+.++..+..... +.+.+||+.|...|.-+
T Consensus 485 ~~~~------------------------------~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 485 NPEN------------------------------EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp SCST------------------------------THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred CCch------------------------------hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 2100 011123333333333 77999999999988654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-08 Score=137.09 Aligned_cols=502 Identities=14% Similarity=0.095 Sum_probs=315.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHH
Q 000050 1891 ISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2622)
Q Consensus 1891 ~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l 1970 (2622)
.+.|.+.+...|..+++.+-... ..|.++ ..+++-+.+.+.+++.++|.-+...+....... ++ ..--.++.+
T Consensus 38 r~~L~s~~~~~kk~alKkvIa~m-t~G~Dv-S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pe----lalLaINtl 110 (746)
T PTZ00429 38 QNDLNGTDSYRKKAAVKRIIANM-TMGRDV-SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PE----KALLAVNTF 110 (746)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH-HCCCCc-hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hH----HHHHHHHHH
Confidence 34445656555544444332221 124443 445555666777888888888777776653321 11 123457777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCc
Q 000050 1971 RTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2622)
Q Consensus 1971 ~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~ 2050 (2622)
.+-+.|+++.+|..|.++++.+.. .+
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~-------~~----------------------------------------------- 136 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRV-------SS----------------------------------------------- 136 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCc-------HH-----------------------------------------------
Confidence 888888999999888877665421 11
Q ss_pred hHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChh-cHHHHHHHHHhhcCCCChhHH
Q 000050 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE-GVESLVSELLKGVGDNQASIR 2129 (2622)
Q Consensus 2051 ~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~-~l~~ll~~Ll~~l~d~~~~vR 2129 (2622)
.++.+++.+.+.+.|.++-||..|+-|+.++....++- .-..+++.|.+.+.|.|+.|.
T Consensus 137 --------------------i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv 196 (746)
T PTZ00429 137 --------------------VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVA 196 (746)
T ss_pred --------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHH
Confidence 12234455666678888999999888888876533221 122456667777889999999
Q ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhh
Q 000050 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2622)
Q Consensus 2130 ~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~ 2209 (2622)
.+|+.++..+.+..+..+ ......+..++..+.+-++=.+-...+.|.. ..+.+
T Consensus 197 ~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~---------------------- 250 (746)
T PTZ00429 197 SNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSD---------------------- 250 (746)
T ss_pred HHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCC----------------------
Confidence 999999988876654333 2334555556555554443332222222221 11110
Q ss_pred hhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhH
Q 000050 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2622)
Q Consensus 2210 ~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk 2289 (2622)
......++..+...+.+.++.+--.|+.++-.+.....++.++..+..+..||+..+. .+.+++
T Consensus 251 --------------~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s--s~~eiq 314 (746)
T PTZ00429 251 --------------KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR--RDAETQ 314 (746)
T ss_pred --------------cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC--CCccHH
Confidence 0112235555566677778888888888887776554434455555667788888754 367899
Q ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHH
Q 000050 2290 SAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAI 2369 (2622)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~ 2369 (2622)
..++..+..++...+..+.+ -...|.-..+|++. +|......|-.++. ..+++.++.+|..-+.+.|.+.+..+
T Consensus 315 yvaLr~I~~i~~~~P~lf~~----~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~a 388 (746)
T PTZ00429 315 YIVCKNIHALLVIFPNLLRT----NLDSFYVRYSDPPF-VKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEV 388 (746)
T ss_pred HHHHHHHHHHHHHCHHHHHH----HHHhhhcccCCcHH-HHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHH
Confidence 99999999888876644333 24556556677765 89999998888754 45788999999998888888999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhc---CCCCchhh
Q 000050 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA---SSPSWAAR 2446 (2622)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~---~~~~~~~r 2446 (2622)
+.|++.+..+. +.....++..|.+.+.+..+ +...+...+..+.+..|+.. ++..+.... .-.+...|
T Consensus 389 IrAIg~lA~k~-----~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AK 459 (746)
T PTZ00429 389 VRAIASLAIKV-----DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAK 459 (746)
T ss_pred HHHHHHHHHhC-----hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHH
Confidence 99999988764 34567788888888876554 33355677777877777632 233333211 11222223
Q ss_pred HhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhh-c
Q 000050 2447 HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSA-L 2525 (2622)
Q Consensus 2447 ~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~-l 2525 (2622)
. ++..++.+..+.+-. ...++..+.+...++.+.+|-..+.+..++.....+ .....+..++.. .
T Consensus 460 a----aiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-------~~~~~l~~vL~~~t 525 (746)
T PTZ00429 460 V----SLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-------GMEPQLNRVLETVT 525 (746)
T ss_pred H----HHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHH
Confidence 2 334455454444421 335665566777778899999999999998877531 234455666643 2
Q ss_pred -CCCCHHHHHHHHHHHHHHH
Q 000050 2526 -HDDSSEVRRRALSALKSVA 2544 (2622)
Q Consensus 2526 -~d~s~dvr~~a~~~l~~~a 2544 (2622)
.++++|||..|..-.+-+.
T Consensus 526 ~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 526 THSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred hcCCChhHHHHHHHHHHHHc
Confidence 3678899999987665443
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-07 Score=127.80 Aligned_cols=494 Identities=12% Similarity=0.076 Sum_probs=310.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcc-hHHHHH
Q 000050 1225 LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVD 1303 (2622)
Q Consensus 1225 l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~-v~~i~~ 1303 (2622)
+.+++...|..++..+...+. .|. -+..+++-+-+.+... +-.+|.-+..++..++ +.+|. .--.+.
T Consensus 41 L~s~~~~~kk~alKkvIa~mt-~G~-DvS~LF~dVvk~~~S~------d~elKKLvYLYL~~ya----~~~pelalLaIN 108 (746)
T PTZ00429 41 LNGTDSYRKKAAVKRIIANMT-MGR-DVSYLFVDVVKLAPST------DLELKKLVYLYVLSTA----RLQPEKALLAVN 108 (746)
T ss_pred HHCCCHHHHHHHHHHHHHHHH-CCC-CchHHHHHHHHHhCCC------CHHHHHHHHHHHHHHc----ccChHHHHHHHH
Confidence 445555555444444333322 454 3455666555555542 3456666666655544 33444 334578
Q ss_pred HHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHH
Q 000050 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL 1383 (2622)
Q Consensus 1304 ~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L 1383 (2622)
.+.+-+.++++.+|..+.++++.+. ..+-.+.++..+...+ .+.+.-+|+.|+.|+..+....+ +.+...++.+.+
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L 184 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIR--VSSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDL 184 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHH
Confidence 8899999999999999998887542 1111233333344444 44567899999999999987544 333233678888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HHhHHhhHH
Q 000050 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQGVKLVLP 1461 (2622)
Q Consensus 1384 ~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~--~~~v~~ilp 1461 (2622)
.+++.|+ |+.+.-.|+.++..+.+..+..+. .....+..++..+.+-++--+-...+.+ ....+ ......++.
T Consensus 185 ~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~ 259 (746)
T PTZ00429 185 VELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLT 259 (746)
T ss_pred HHHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHH
Confidence 8888877 899999999999999876664332 2344555666666655554444333333 33222 223467778
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHhhC-chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHH
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp 1540 (2622)
.+...|.+.+..+..+++.++-.+.... +..+...+..+.+.++.+ ..+++++|-.+.+.+..+....+ ..+...+.
T Consensus 260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~ 337 (746)
T PTZ00429 260 RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLD 337 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHH
Confidence 8888888888888888888887776432 333333344454555555 45678999999999988887542 23344566
Q ss_pred HHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhh
Q 000050 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2622)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2622)
.+.-..+||.. ++ ..++.+... .++.....++..|.....+.+.+.++.+...+|.++..+. ...+.
T Consensus 338 ~Ff~~~~Dp~y-IK~~KLeIL~~L-----ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~------~~a~~ 405 (746)
T PTZ00429 338 SFYVRYSDPPF-VKLEKLRLLLKL-----VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD------SVAPD 405 (746)
T ss_pred hhhcccCCcHH-HHHHHHHHHHHH-----cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh------HHHHH
Confidence 66666678875 55 566666531 2334455677888888888899999999999999987542 24566
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh--hhcCChHHHHHHHHHHHHHHHHhchhHHHhH
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L--~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~l 1697 (2622)
++..|.+++.+... +...++..+..+.+.....+ +++.+...+ ..-.....|...+.-+|+.+..... ...+
T Consensus 406 cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~ 479 (746)
T PTZ00429 406 CANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDI 479 (746)
T ss_pred HHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHH
Confidence 77778788876544 34467788888877655432 445555433 1112233566667778887664422 2445
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhc-C-CCChHHHHHHHHHHHH
Q 000050 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGHV 1763 (2622)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L-~-d~~~~VR~~al~al~~ 1763 (2622)
+..++..+.+.+..||-..+.+...+....+.+.. ..+..+++.+ . +++.+||+.|.--++.
T Consensus 480 L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~rL 543 (746)
T PTZ00429 480 IQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWRL 543 (746)
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 55555666667888998888877777766654433 3444445433 3 4667999988654443
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.9e-07 Score=115.71 Aligned_cols=638 Identities=14% Similarity=0.169 Sum_probs=347.8
Q ss_pred ChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccch-hhheeeecCCchHH-HHHHH--------HHHHhc
Q 000050 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVS-TSLWIAVHDPEKSV-AEAAE--------DIWDRY 1124 (2622)
Q Consensus 1055 ~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~la~--------~~w~~~ 1124 (2622)
..+++.+++.+++.+|+..|++|+++|.+.... |. |. ..+.+..-|..+.+ |..|. +.|...
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pg---Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~ 73 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PG---FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSH 73 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----Cc---HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCcc
Confidence 346788899999999999999999999876422 22 33 33345555555554 44332 468766
Q ss_pred C-----CCCCCC----h-HhHHHHhcCCCHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcch
Q 000050 1125 G-----YDFGTD----Y-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLG 1193 (2622)
Q Consensus 1125 ~-----~~~~~~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1193 (2622)
. +..+++ + ..++.++.+....+|-....++-.++ ..+|+.|+.++.......+ . .....
T Consensus 74 ~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lq----s------~~~~~ 143 (1010)
T KOG1991|consen 74 EAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQ----S------QDANH 143 (1010)
T ss_pred CCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhc----C------cchhh
Confidence 2 122222 3 66788888888899999999997775 4688888888777764321 1 12123
Q ss_pred hhHHHHHHHHhhhhhC--CCC----hhHHHHH----HHh---hhcCCCCHHHHHH---HHHHHHHHHHH------hccch
Q 000050 1194 RQGIALALHSAADVLR--TKD----LPVIMTF----LIS---RALADTNADVRGR---MLNAGIMIIDK------HGRDN 1251 (2622)
Q Consensus 1194 R~~~~~al~~~~~~~~--~~~----~~~i~~~----li~---~~l~d~~~~VR~~---a~~a~~~~i~~------~g~~~ 1251 (2622)
-.++..++..++..-+ .++ +..++.. +.. +-+.+.+...-.- .+......+-. ...+.
T Consensus 144 vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~ 223 (1010)
T KOG1991|consen 144 VYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPET 223 (1010)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchh
Confidence 3677888888876432 211 2222222 111 2234443333221 12222111110 11223
Q ss_pred hhhhHHHHHHHhcCCCCCh--hhhhhh---------hhHHHHHHHHHh-hhhccCC--c------------chHHHHHHH
Q 000050 1252 VSLLFPIFENYLNKKASDE--EKYDLV---------REGVVIFTGALA-KHLAKDD--P------------KVHAVVDKL 1305 (2622)
Q Consensus 1252 ~~~llp~~~~~l~~~~~~~--~~~~~v---------r~~~~~~~~~la-~~l~~~~--~------------~v~~i~~~L 1305 (2622)
...-+.+|-..++.+.+.+ ..+... +.=+...+.++- ++-+... + .+..+.+.+
T Consensus 224 f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~ 303 (1010)
T KOG1991|consen 224 FTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVF 303 (1010)
T ss_pred HHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555665543322 111222 222333333333 3322111 1 112222222
Q ss_pred HH---HcCC---CCHHHHHHHHhhhHhhH------hhhccchHHHHHH-HHHHHh---------cCC-------------
Q 000050 1306 LD---VLNT---PSEAVQRAVSSCLSPLM------QSMQDEAPTLVSR-LLDQLM---------KSD------------- 1350 (2622)
Q Consensus 1306 ~~---~l~~---~~~~Vq~~a~~~L~~lv------~~~~~~~~~~i~~-Ll~~L~---------~~~------------- 1350 (2622)
++ .++. -++.|-.-+..-+...+ +.+++....++.. ++..+. +.+
T Consensus 304 lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~e 383 (1010)
T KOG1991|consen 304 LKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFE 383 (1010)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhc
Confidence 22 2222 12333322222222111 1111111111111 111111 000
Q ss_pred C-hHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhcc--cchhHHHH
Q 000050 1351 K-YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVIQ 1420 (2622)
Q Consensus 1351 ~-~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-------~~~~~~~R~~al~al~~La~~~~~--~~~~~v~~ 1420 (2622)
+ +..+-+|...+-.+++..|.+.+. .+++++.+.+. +.++++..+||+.+++.+++.+.+ .+...+..
T Consensus 384 d~~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~ 461 (1010)
T KOG1991|consen 384 DGYSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEY 461 (1010)
T ss_pred ccCCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHH
Confidence 1 234457778888888889888886 78888887775 234788999999999999987763 23444443
Q ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhcHHh-HHhhHHHHHhhcc-CCChhhHHHHHHHHHHHHhhCc---hhh
Q 000050 1421 -MLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQL 1493 (2622)
Q Consensus 1421 -ilp~ll~~l~D~~~~VR~aa~~al~~i~-~~l~~~~-v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p---~~l 1493 (2622)
++++++..+.++.-..|..|+..+..+. ..+++.. ....+....++|. +.+-.+|..|+.+|..+....+ ..+
T Consensus 462 flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 5688889999999999999999988887 4565554 3667777777777 7788999999999999888765 348
Q ss_pred hhhhhhhHHHHhhhhcCCCHHHHHHHHHH-HHHHhhhcCC--hh-HHhHHHHHHhhcCC--C-ChhHH-HH------HHH
Q 000050 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTA-LQQVGSVIKN--PE-IASLVPTLLMGLTD--P-NDHTK-YS------LDI 1559 (2622)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~a-L~~l~~~~~~--~~-i~~ilp~Ll~~l~d--~-~~~~r-~a------l~~ 1559 (2622)
+++.|.++..++.+.++.+.+.=....+. ++.+++.+.. .+ .+.+...+.+.+.+ + ++... .+ +.+
T Consensus 542 ~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 542 SAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 89999999999999988766554444433 3455544431 12 25566667776653 1 11111 12 222
Q ss_pred HHhc--ccc--ccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHH
Q 000050 1560 LLQT--TFV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2622)
Q Consensus 1560 L~~~--~~~--~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~v 1635 (2622)
+... .+. ..+-...-+.+.|.+.-.+...-.+.-..++.++..+--. .+++.|-+-.+.+.+.+.+.+.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~mW~ll~li~e~~~~~---- 694 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIMWGLLELILEVFQDD---- 694 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHHHHHHHHHHHHHhhh----
Confidence 1110 000 0011112223344444444444445555555555443221 1345555555555555555443
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccC--CChhhH
Q 000050 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVR 1713 (2622)
Q Consensus 1636 R~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~--~~~~vR 1713 (2622)
|-+|+++++|.+-+.+.-+.+. ... ...+...+...+.+.+.+ ....-.
T Consensus 695 ---------------~~dyf~d~~~~l~N~vt~g~~~-~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~ 745 (1010)
T KOG1991|consen 695 ---------------GIDYFTDMMPALHNYVTYGTPS-LLS-------------NPDYLQILLEIIKKVLTSENGEDSDC 745 (1010)
T ss_pred ---------------hHHHHHHHHHHHhhheeeCchh-hhc-------------cchHHHHHHHHHHHHHcCCCCchHHH
Confidence 2346777777776555433321 000 011222222222233333 344556
Q ss_pred HHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCC
Q 000050 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2622)
Q Consensus 1714 ~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d 1748 (2622)
++++..+..+...+++....|++.++...+..+..
T Consensus 746 ~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 746 ESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 78899999999999888788888888888777766
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.8e-10 Score=133.79 Aligned_cols=253 Identities=17% Similarity=0.153 Sum_probs=168.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHH
Q 000050 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2622)
Q Consensus 1302 ~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2622)
.+.|...|.|++..||..++..|..+ ++ +..++.+.. +.++++..+|..|+++|+.+-.. .... ...++
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~----~~--~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~--~~~~--~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR----GG--QDVFRLAIE-LCSSKNPIERDIGADILSQLGMA--KRCQ--DNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc----Cc--chHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCC--ccch--HHHHH
Confidence 46677888899999999988887543 21 233333333 45566778999999998875321 1111 14667
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHH
Q 000050 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2622)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2622)
.|...+.++.++.+|..|+.++|.++.... .+....++.+...+.|+++.||..+..+++.+ +-...++
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-------~~~~ai~ 162 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-------NDEAAIP 162 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-------CCHHHHH
Confidence 777664444478999999888888753221 12234566667778888889999888888654 2245678
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHH
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~ 1541 (2622)
.|+..+.+++|.+|+.++..||.+.+.. +.+++.|...++|.+..||..|..+|+.+.. ...+|.
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av~~ 227 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVLSV 227 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHHHH
Confidence 8888888888888888888888773322 4566777888888888888888888887653 134455
Q ss_pred HHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhH
Q 000050 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2622)
Q Consensus 1542 Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll 1621 (2622)
|++.+.++ + ++..++.++|.+. + +..+
T Consensus 228 Li~~L~~~---------------------------------------~--~~~~a~~ALg~ig----~--------~~a~ 254 (280)
T PRK09687 228 LIKELKKG---------------------------------------T--VGDLIIEAAGELG----D--------KTLL 254 (280)
T ss_pred HHHHHcCC---------------------------------------c--hHHHHHHHHHhcC----C--------HhHH
Confidence 54444433 2 3445666666653 2 1356
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHH
Q 000050 1622 PEVKKVLV-DPIPEVRSVAARAIG 1644 (2622)
Q Consensus 1622 ~~L~~~L~-d~~~~vR~~a~~aL~ 1644 (2622)
|.|.+++. ++++.|+..+..++.
T Consensus 255 p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 255 PVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhhCCChhHHHHHHHHHh
Confidence 67777775 667777777776654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-10 Score=157.42 Aligned_cols=273 Identities=22% Similarity=0.251 Sum_probs=200.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
.++.|+..+.|+++.||..|..++..+. -...+|.|...|.++++.+|..++..|+.+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 4567778889999999999999887762 245678888899999999999999999887643221
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHH
Q 000050 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2622)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2622)
.+.+...|+|+++.||.+|+.+|+.+... + ...|+..+.|++..+| .++.+|... +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAG--D------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccC--C------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 24566778899999999999999987521 1 2356677889988888 567777531 11 13
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000050 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2622)
Q Consensus 1580 ~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll 1659 (2622)
.+...+.|.++.+|..++..|+.+... . ...++.+..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778899999999999999887542 1 1135667788889999999999999988632 1 2233
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHH
Q 000050 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2622)
Q Consensus 1660 ~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii 1739 (2622)
+.+...+.++ ++.+|..++.+|+.+. . ++.++.++..+.++++.||..+..+|+.+. +. +...
T Consensus 810 ~~l~~aL~d~-d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALRAS-AWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 4566666554 4568888888887642 1 234567777888899999999998888751 11 2456
Q ss_pred HHHHhhcCCCChHHHHHHHHHHH
Q 000050 1740 PAILDGLADENESVRDAALGAGH 1762 (2622)
Q Consensus 1740 ~~ll~~L~d~~~~VR~~al~al~ 1762 (2622)
+.+...++|++.+||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 77778888989999998888775
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=132.80 Aligned_cols=252 Identities=13% Similarity=0.067 Sum_probs=189.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
-.+.++..+.|++..||..+..++..+ +-..+++.+...+.+++..+|..++.+|+.+...... ....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~-------~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR-------GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc-------CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 356667788999999999999998766 2355677777778889999999999999998642110 2456
Q ss_pred HHHHhhh-hcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000050 1501 VPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1501 vp~L~~~-L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
+|.|..+ ++|+++.||..|+.+||.++.....+ ....++.+...+.|++..+| .++.+|... . -...+
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~------~---~~~ai 161 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVI------N---DEAAI 161 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhcc------C---CHHHH
Confidence 6777665 78999999999999999986433222 23566677788889999998 456666431 1 13477
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~l 1658 (2622)
+.|...++|.++.+|..|...+|.+.. +. +...+.|...+.|+++.||..|+.+||.+.. +..
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~--~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~a 224 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNKY--DN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRV 224 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCC--CC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhH
Confidence 899999999999999999999998722 12 3578889999999999999999999988432 478
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhcc-CCChhhHHHHHHHHH
Q 000050 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 1721 (2622)
Q Consensus 1659 l~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~-~~~~~vR~~al~~l~ 1721 (2622)
+|.|++.+.++. .|..++.+++++ |. +..+|.+.+.+. +++..++..+..++.
T Consensus 225 v~~Li~~L~~~~---~~~~a~~ALg~i----g~---~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 225 LSVLIKELKKGT---VGDLIIEAAGEL----GD---KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHcCCc---hHHHHHHHHHhc----CC---HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 888888887653 566677777765 33 356777777775 678888877776654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-09 Score=152.17 Aligned_cols=274 Identities=21% Similarity=0.227 Sum_probs=189.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHH
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~ 1380 (2622)
.++.|.+.|.|+++.||..+++.|..+- .+..++.|...| ++++..+|..|+.+|..+...... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------h
Confidence 3567888889999999999999987642 234556666555 566788999999999877543221 2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000050 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2622)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2622)
+.+...+.++ ++.+|..|+.+|+.+.. +. ...++..+.|+++.||.+|..++..+-. .
T Consensus 687 ~~L~~~L~~~-d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------~ 744 (897)
T PRK13800 687 PALRDHLGSP-DPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD----------V 744 (897)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC----------c
Confidence 3355566665 79999999888877541 11 1245678899999999999888876511 1
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHH
Q 000050 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2622)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp 1540 (2622)
+.++..+.++++.+|..++..|+.+....+ ..++.|..+++|+++.||.+|+.+|+.++.. ....+
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~ 810 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCP------PDDVA 810 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chhHH
Confidence 345667888999999999999987754321 2256677888999999999999999888642 12334
Q ss_pred HHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhh
Q 000050 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2622)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2622)
.+...+.|+++.+| .|+.+|... . -...++.|...++|+++.||..|...|+.+. ++ +.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l------~---~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--------~~ 870 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA------A---ADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--------PA 870 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc------c---ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--------HH
Confidence 56667777777777 456665431 0 0234567777777778888888877777641 11 23
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~ 1645 (2622)
..+.|...++|+++.||..|.++|..
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 56666677777788888887777753
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-09 Score=129.79 Aligned_cols=377 Identities=17% Similarity=0.165 Sum_probs=261.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HH---hHHhhHHHHHhhcc-CCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQ---GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~--~~---~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
.+.++..+...++..+-.+..+++.+.+.-. +- -...++|.+++.|. +.....+..|.++|..++.+..++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 3444444444445556666666666655322 11 12578999999987 455788999999999999887766544
Q ss_pred hh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-h-h-H-HhHHHHHHhhcCCCCh--hHHHHHHHHHhcccccc
Q 000050 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-E-I-ASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNT 1568 (2622)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~-i-~~ilp~Ll~~l~d~~~--~~r~al~~L~~~~~~~~ 1568 (2622)
.. ...+|.+..++.+++..|++.|++||++++..-+. + + + ...++.|+..+..+.. ..|.+..++.. +...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN--lcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN--LCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH--HHcC
Confidence 33 35789999999999999999999999999865321 1 1 1 3567777777766654 55655555543 2221
Q ss_pred C-Ch---hhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1569 V-DA---PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1569 ~-~~---~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
. .. .....++|.|.+.+.+.+.++...|+.++..+... .++.+.-. -..++|.+..+|.++.+.++..|.+++
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 1 22 35567899999999999999999999999998763 22222211 235789999999999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH----HHhHhHHHHHhccCCChhhHHH
Q 000050 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDG 1715 (2622)
Q Consensus 1644 ~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~----l~~llp~l~~~l~~~~~~vR~~ 1715 (2622)
|.++...+.. .-...+|.|...+........|..++..++.|..+..... -..++|.++..+...+...|..
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 9977644332 2346778888877755555678899999999988443321 1568999999999999999999
Q ss_pred HHHHHHHhhhhhCcchhhhHHh--HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhch------hhhh------HHHHh
Q 000050 1716 YLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEHYATTS------LPLL------LPAVE 1781 (2622)
Q Consensus 1716 al~~l~~L~~~~g~~f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~------i~~l------lp~l~ 1781 (2622)
|..+++.++..-..+-..|+-. +++++...|.-.+..+-..++.++..+.+...... ...+ +..++
T Consensus 384 AawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE 463 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIE 463 (514)
T ss_pred HHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHH
Confidence 9999998887655665667644 89999999977777777778888887765432111 1111 12222
Q ss_pred hccCCCchHHHHHHHHHHHHH
Q 000050 1782 DGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
..-.+++..+...|...+...
T Consensus 464 ~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 464 NLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred HhhccccHHHHHHHHHHHHHh
Confidence 333445555666666666655
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-08 Score=124.98 Aligned_cols=374 Identities=17% Similarity=0.150 Sum_probs=251.1
Q ss_pred CChHHHHHHHHHHHHHHhhhC---ccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHH
Q 000050 1350 DKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLL 1425 (2622)
Q Consensus 1350 ~~~~~r~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~-~ilp~l 1425 (2622)
++...+..+...+..+...-. ...+-...+++.+.+++....++..+..|.-++..++.+....-.-++. ..+|.+
T Consensus 78 ~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~f 157 (514)
T KOG0166|consen 78 DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIF 157 (514)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHH
Confidence 344556666666665554322 2222233788888888876657999999999999999876543333332 578999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhccCCC-hhhHHHHHHHHHHHHhhC-chhhhhhhhh
Q 000050 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCA-PQQLSQCLPK 1499 (2622)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~-p~~l~~~L~~ 1499 (2622)
..++..++..|++.|.-|++.++..-+.. .+ ..++++|+..+.... -...+.+.++|..++.+. |.--......
T Consensus 158 i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~ 237 (514)
T KOG0166|consen 158 IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP 237 (514)
T ss_pred HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 99999999999999999999998765443 22 467788888777654 367888999999999864 4433345678
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000050 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2622)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2622)
++|.|..++.+.+++|..-|+||+..+.+.- ++.++ .++ -..++|
T Consensus 238 iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq----------------------~vi------------~~gvv~ 282 (514)
T KOG0166|consen 238 ILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQ----------------------MVI------------DAGVVP 282 (514)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHH----------------------HHH------------HccchH
Confidence 8999999999999999999999999998642 22111 111 013556
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc--hHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCC---
Q 000050 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEE--- 1653 (2622)
Q Consensus 1580 ~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~--~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~~g~~--- 1653 (2622)
.+...+...+..++..|...+|++... + +.... .-...+|.+..++. ++...+|+.|...++.+.....+.
T Consensus 283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG--~-d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa 359 (514)
T KOG0166|consen 283 RLVDLLGHSSPKVVTPALRAIGNIVTG--S-DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA 359 (514)
T ss_pred HHHHHHcCCCcccccHHHhhccceeec--c-HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH
Confidence 666677777777777788888886552 2 11111 12346788888887 666779999999999998743322
Q ss_pred -CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhh
Q 000050 1654 -NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2622)
Q Consensus 1654 -~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~ 1727 (2622)
.-..++|.|+..+++.+ ...|..++.+++.+..+...+.. ..+++.+...+.-.+..+-..++.++..+-..-
T Consensus 360 Vida~l~p~Li~~l~~~e-f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 360 VIDANLIPVLINLLQTAE-FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHHcccHHHHHHHHhccc-hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 23478999999998776 56899999999988776555433 345677777765556666556666666655432
Q ss_pred Ccch----hhh---HHh--HHHHHHhhcCCCChHHHHHHHHHHH
Q 000050 1728 GVQF----QNY---LQQ--VLPAILDGLADENESVRDAALGAGH 1762 (2622)
Q Consensus 1728 g~~f----~p~---l~~--ii~~ll~~L~d~~~~VR~~al~al~ 1762 (2622)
...- .+| ++. -+..+-..-.++++++.+.|.+.+.
T Consensus 439 e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 439 EAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 2111 222 221 2233333334666777766655443
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=0.00039 Score=89.61 Aligned_cols=655 Identities=14% Similarity=0.165 Sum_probs=319.2
Q ss_pred CCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHH----HHHHHhccccc------cCChhhhhhHHHH
Q 000050 1511 THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS----LDILLQTTFVN------TVDAPSLALLVPI 1580 (2622)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~a----l~~L~~~~~~~------~~~~~~l~~i~p~ 1580 (2622)
++|.||+.|-++|.+.... ..+.-.++..+-+.-.|+ .+|-| .+..++..... .+.+..-..+-..
T Consensus 17 pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~--~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~iksl 92 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDP--QIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSL 92 (960)
T ss_pred CCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcCh--hHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHH
Confidence 4678888888888877643 122233333333322232 23311 22222211111 1222233344455
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-----c
Q 000050 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-----F 1655 (2622)
Q Consensus 1581 L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~-----~ 1655 (2622)
+...+-+....++....++++-++. .|+-.-+|.++|-+...++..+..+-......-.++.+....++ +
T Consensus 93 Iv~lMl~s~~~iQ~qlseal~~Ig~-----~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~ 167 (960)
T KOG1992|consen 93 IVTLMLSSPFNIQKQLSEALSLIGK-----RDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALW 167 (960)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhc-----cccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 5555555567777777777776654 35666789999999999997776666666655566666554331 1
Q ss_pred --------------hhhHHHHHHHhhhcCChHH-HH---HHHHHHHHHHHHhc----hhH----HHhHhHHHHHhccCC-
Q 000050 1656 --------------PDLVSWLLDALKSDNSNVE-RS---GAAQGLSEVLAALG----TVY----FEHILPDIIRNCSHQ- 1708 (2622)
Q Consensus 1656 --------------~~ll~~Ll~~L~~~~~~~~-r~---~a~~~L~~i~~~~g----~~~----l~~llp~l~~~l~~~- 1708 (2622)
.+++...++..+....... .. +...-++.+.-.+. +++ ++..|+.+.+.+...
T Consensus 168 ~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~ 247 (960)
T KOG1992|consen 168 LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDN 247 (960)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccC
Confidence 1111111222222211111 00 11111122222221 122 345566666665522
Q ss_pred ------------ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHH--hh
Q 000050 1709 ------------RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE-----SVRDAALGAGHVLVEH--YA 1769 (2622)
Q Consensus 1709 ------------~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~-----~VR~~al~al~~lv~~--~~ 1769 (2622)
-..+|...+..+.-.+....+.|.||+++++......+..-.. .....|+..+..+.+. |.
T Consensus 248 p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~ 327 (960)
T KOG1992|consen 248 PLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYA 327 (960)
T ss_pred cccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 1346777788888888888899999999999988888765433 3334455555544431 11
Q ss_pred hchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH--hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHH
Q 000050 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2622)
Q Consensus 1770 ~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~--~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~ 1847 (2622)
. ...++ ..+..+... +++..-+...++..|| +..++.+ +-+.
T Consensus 328 ~------------~F~~~---------~vl~~i~e~VvlpN~~lR~eDeElFED---~pleYiR------------RDlE 371 (960)
T KOG1992|consen 328 E------------LFEGE---------NVLAQICEKVVLPNLILREEDEELFED---NPLEYIR------------RDLE 371 (960)
T ss_pred h------------hhcch---------HHHHHHHHhhcccccccchhhHHHhcc---CHHHHHH------------Hhcc
Confidence 0 00000 011111111 1111100000000001 0111100 0000
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhccc-----
Q 000050 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGER----- 1919 (2622)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~---s~~~~~R~~A~~~L~~lv~~~~~~----- 1919 (2622)
-+|.+ .=|++|++.++.+..+.......++..-++.++.... +.+|..+..++..+..+..+.+..
T Consensus 372 -----GsDvd-TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvt 445 (960)
T KOG1992|consen 372 -----GSDVD-TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVT 445 (960)
T ss_pred -----cCCcc-hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhccee
Confidence 02322 3478899999999998876666666666655555443 457777777777777776553211
Q ss_pred -------h----hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHH
Q 000050 1920 -------V----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988 (2622)
Q Consensus 1920 -------~----l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~a 1988 (2622)
+ ...++|-|..--..+.|-++.++..-+-..=.. .-.+++..++|.+...+..+..-|...|+.+
T Consensus 446 stn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q----l~~~~lm~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 446 STNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ----LGKEHLMALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred eccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeeccc----CChHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 1 123444433311123455555544322211111 1245677888999999988889999999999
Q ss_pred HHHHHHHhC--------hhhhhh----hHHHHHHhcccCC--chhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHH
Q 000050 1989 FSTLFKSAG--------MQAIDE----IVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNA 2054 (2622)
Q Consensus 1989 l~~l~~~~g--------~~~~~~----ilp~Ll~~L~~~~--~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~ 2054 (2622)
+..+....+ +..+.+ ++..|.+.++.++ +.++-.+++..+++...+.
T Consensus 522 iEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~------------------- 582 (960)
T KOG1992|consen 522 IEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSA------------------- 582 (960)
T ss_pred HHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHh-------------------
Confidence 998753222 222222 1222223332222 2244444444444322222
Q ss_pred HHHHHHHHHhCCChhhhHhhhHHHHHHhc----CC-CCHHHHHHHHHHHHHhhhccChhc-------HHHHHHHHHhhcC
Q 000050 2055 HALGALAEVAGPGLNFHLGTILPALLSAM----GD-DDMDVQSLAKEAAETVTLVIDEEG-------VESLVSELLKGVG 2122 (2622)
Q Consensus 2055 ~aL~sLa~~~g~~l~~~l~~il~~Ll~~l----~~-~~~~vr~~a~~al~~l~~~~~~~~-------l~~ll~~Ll~~l~ 2122 (2622)
..|+.+.+++.|.+.+ ++ .++.--....++++.++......+ ...++|.+..-+.
T Consensus 583 -------------i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~ 649 (960)
T KOG1992|consen 583 -------------IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILS 649 (960)
T ss_pred -------------hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence 2233333333322221 11 123333333444444443322111 2233333333333
Q ss_pred CCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhh
Q 000050 2123 DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2622)
Q Consensus 2123 d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2622)
.+-.+.--.+.+.++.+.+.+...+.+.+..+++.|+. .+.|+ .+...|.++..++..+..
T Consensus 650 eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLs----------p~lW~---------r~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 650 EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLS----------PNLWK---------RSGNIPALVRLLQAFLKT 710 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcC----------HHHHh---------hcCCcHHHHHHHHHHHhc
Confidence 22222333455566666665544443333333333321 11111 112233444333333321
Q ss_pred chhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcC
Q 000050 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282 (2622)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~ 2282 (2622)
... .++ ..+.+.+++.+|...+.+...+ ..+...+..+....++..+.||+.++.+-|.+-++.
T Consensus 711 g~~-----------~~~---~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqn 774 (960)
T KOG1992|consen 711 GSQ-----------IVE---AADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQN 774 (960)
T ss_pred Cch-----------hhc---ccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhc
Confidence 100 011 1134667888887777655443 467888899999998888999999999999998887
Q ss_pred CCCHh
Q 000050 2283 RFPWQ 2287 (2622)
Q Consensus 2283 ~~~~~ 2287 (2622)
.....
T Consensus 775 skT~k 779 (960)
T KOG1992|consen 775 SKTEK 779 (960)
T ss_pred cCcHH
Confidence 54444
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.00043 Score=89.27 Aligned_cols=300 Identities=15% Similarity=0.167 Sum_probs=175.0
Q ss_pred HhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhh
Q 000050 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2622)
Q Consensus 1409 ~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~ 1488 (2622)
-++..|++++..-++...+.+.-.+|..+....++ .++ -..|..-|+.+.-.+..
T Consensus 223 DiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~--------------~~l-----------~~lka~ICEi~~LY~~k 277 (960)
T KOG1992|consen 223 DIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEA--------------TVL-----------DKLKAQICEIFNLYATK 277 (960)
T ss_pred cchHHHHhhHHHHHHHHHHHHhccCcccccCcccc--------------cHH-----------HHHHHHHHHHHHHHHHh
Confidence 35566777777777777777764444433211000 000 02355567777767777
Q ss_pred CchhhhhhhhhhHHHHhhhhcCCCHHHH--HHHHHHHHHHhhhcCChhH------HhHHHHHHhhcCCCChhHHHHHHHH
Q 000050 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQ--SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2622)
Q Consensus 1489 ~p~~l~~~L~~ivp~L~~~L~D~~~~VR--~aA~~aL~~l~~~~~~~~i------~~ilp~Ll~~l~d~~~~~r~al~~L 1560 (2622)
.++.+...+++++...+.++.+..+..| ..+..|+.-+..+...+.+ +.++..+.+...=|+-..|..-+.+
T Consensus 278 YeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeEl 357 (960)
T KOG1992|consen 278 YEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEEL 357 (960)
T ss_pred hHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHH
Confidence 7888888999999888888876554443 3444556655555544433 3455555555444443333211111
Q ss_pred HhccccccCChhhhhhHHHHHHhhhcCCCHH-HHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHH-HhcC--CCHHHH
Q 000050 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAE-TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVD--PIPEVR 1636 (2622)
Q Consensus 1561 ~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~-~L~d--~~~~vR 1636 (2622)
. -..-+..+.+.++..+.+ -|+.|++.+..+|..+.. .+.+....-+..+.. ...+ .+|.-.
T Consensus 358 F------------ED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~--~vt~v~~~~v~~~l~~y~~nPS~nWk~k 423 (960)
T KOG1992|consen 358 F------------EDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEG--QVTGVFSSEVQRLLDQYSKNPSGNWKKK 423 (960)
T ss_pred h------------ccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhccCCCcccccc
Confidence 1 112455667777665555 466789999999987632 333444444444433 2233 468888
Q ss_pred HHHHHHHHHHHhhhCCC--------CchhhHHHH----HHHhhhc---CChHHHHHHHHHHHHHHHHhchhHHHhHhHHH
Q 000050 1637 SVAARAIGSLIRGMGEE--------NFPDLVSWL----LDALKSD---NSNVERSGAAQGLSEVLAALGTVYFEHILPDI 1701 (2622)
Q Consensus 1637 ~~a~~aL~~L~~~~g~~--------~~~~ll~~L----l~~L~~~---~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l 1701 (2622)
..++..+.+++...+.. .+-++...+ ...|.+. +....+.++..-+-..-..+|+..+-.++|.+
T Consensus 424 d~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~l 503 (960)
T KOG1992|consen 424 DRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRL 503 (960)
T ss_pred chhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHH
Confidence 88888888888754322 111222222 2222221 11122333322222333456777788899999
Q ss_pred HHhccCCChhhHHHHHHHHHHhhhhhCc---------chhhhHHhHHHHHHhhcC
Q 000050 1702 IRNCSHQRASVRDGYLTLFKYLPRSLGV---------QFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1702 ~~~l~~~~~~vR~~al~~l~~L~~~~g~---------~f~p~l~~ii~~ll~~L~ 1747 (2622)
+..+.....-|-..|..++..+....+. ...||+..++..+++.++
T Consensus 504 i~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s 558 (960)
T KOG1992|consen 504 IRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALS 558 (960)
T ss_pred HHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhcc
Confidence 9999999999999999999888765443 456777777777776665
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.0024 Score=84.78 Aligned_cols=390 Identities=13% Similarity=0.113 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHhCCC--hhhhHh-hhHHHHHHhcCCCCHHHHHHHHHHHHHhhh-ccC-hhcHHHHHHHHHhhcC-CCCh
Q 000050 2053 NAHALGALAEVAGPG--LNFHLG-TILPALLSAMGDDDMDVQSLAKEAAETVTL-VID-EEGVESLVSELLKGVG-DNQA 2126 (2622)
Q Consensus 2053 ~~~aL~sLa~~~g~~--l~~~l~-~il~~Ll~~l~~~~~~vr~~a~~al~~l~~-~~~-~~~l~~ll~~Ll~~l~-d~~~ 2126 (2622)
+.+++|+|++..... +...+. -+.+.++-.+.++..-+|..+++.++.+.. .+. ...+.+.+....+.+. |.+.
T Consensus 438 AL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~l 517 (1010)
T KOG1991|consen 438 ALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNEL 517 (1010)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcC
Confidence 556777777654321 222222 233444555677778899999999988863 333 3447788888888887 7889
Q ss_pred hHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhc
Q 000050 2127 SIRRSSAYLIGYFYKNSK---LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203 (2622)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~---~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~ 2203 (2622)
.||..|+.++..|..+.. ..++++++.+++.|+.+.++-+.+......+ .++...+.+..|-.++ +
T Consensus 518 PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme---~iV~~fseElsPfA~e-L------- 586 (1010)
T KOG1991|consen 518 PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVME---KIVCKFSEELSPFAVE-L------- 586 (1010)
T ss_pred chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHH---HHHHHHHHhhchhHHH-H-------
Confidence 999999999999987654 4489999999999999998766554443332 2322222222111111 1
Q ss_pred hhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHcc-----CCHHHHH-HHH---HHHHHHHhhcCh-hhhhhhhhhhh
Q 000050 2204 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-----GSAELRE-QAA---LGLGELIEVTSE-QSLKEFVIPIT 2273 (2622)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~-----~~~~~r~-~aa---~~L~~l~~~~~~-~~l~p~v~~i~ 2273 (2622)
.+.+...|.+.+++ ...+.+. .|. .++..+...... ..+-.++..+.
T Consensus 587 -----------------------~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~ 643 (1010)
T KOG1991|consen 587 -----------------------CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIV 643 (1010)
T ss_pred -----------------------HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11122233333332 1122222 222 333344333220 11222333333
Q ss_pred HHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC----hhh
Q 000050 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR----VDP 2349 (2622)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~----~~~ 2349 (2622)
-|.+..+-..+-.++-..++.....+-- .-..+.|-.=+|.+.+.+++.+..-..-....-+|-.++.++.. -..
T Consensus 644 l~vi~~iL~~~i~dfyeE~~ei~~~~t~-~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~ 722 (1010)
T KOG1991|consen 644 LPVIGFILKNDITDFYEELLEIVSSLTF-LSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPD 722 (1010)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhhh-hhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccch
Confidence 3333332221122233333333222211 11123343445677778888887766777777777777554321 111
Q ss_pred HHHH---HHHh-hhc--CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhh
Q 000050 2350 LVGD---LLSS-LQV--SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQC 2421 (2622)
Q Consensus 2350 ll~~---Ll~~-l~~--~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~ 2421 (2622)
|... ++.. +.+ .+..=+..+.+-+..++.+++..+ +.+++..+......+.. .+...|..+.++.-+..-+
T Consensus 723 y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~-dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyy 801 (1010)
T KOG1991|consen 723 YLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLL-DQYIPLFLELALSRLTREVETSELRVMLLEVVINALYY 801 (1010)
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcH-hhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 2222 2222 222 123446667888888888887743 45666666665555554 4555677766665544434
Q ss_pred cCchHH-------------HHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhh
Q 000050 2422 MEDGQL-------------ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481 (2622)
Q Consensus 2422 ~~~~~~-------------~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~ 2481 (2622)
.|...+ ...+..+..+..-.+ +.-++++|..++.-.+..-+.......+.+.+....
T Consensus 802 nP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HD---kKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~ 871 (1010)
T KOG1991|consen 802 NPKLTLGILENQGFLNNFFTLWFQFINQFKKVHD---KKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELL 871 (1010)
T ss_pred CcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 443221 111122222222112 445788888887653322221222235555555433
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-05 Score=102.53 Aligned_cols=491 Identities=19% Similarity=0.188 Sum_probs=286.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHH
Q 000050 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPT 1969 (2622)
Q Consensus 1890 L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~ 1969 (2622)
+..+|.+.....+..|.+-+-.++.+ |.+ ...++|.+.+-....+.++|.-+..-|-.-.+.-....+ --+..
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~-G~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-----LSInt 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK-GKD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-----LSINT 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc-CCc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-----eeHHH
Confidence 34445665555555554433333322 332 566777777777788999988777666655443322221 12566
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCC
Q 000050 1970 IRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049 (2622)
Q Consensus 1970 l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~ 2049 (2622)
+.+.|.|+++.+|..|.+++..+-- .-+.|.
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI------------------------------------------ 143 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRV-------PMIAPI------------------------------------------ 143 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHH------------------------------------------
Confidence 7889999999999998887765521 111111
Q ss_pred chHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHH
Q 000050 2050 SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIR 2129 (2622)
Q Consensus 2050 ~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR 2129 (2622)
++-++-+...|..+.||..++.|+-++- +.+.+.-+.+...+-..+.|.++.|-
T Consensus 144 -------------------------~llAIk~~~~D~s~yVRk~AA~AIpKLY-sLd~e~k~qL~e~I~~LLaD~splVv 197 (968)
T KOG1060|consen 144 -------------------------MLLAIKKAVTDPSPYVRKTAAHAIPKLY-SLDPEQKDQLEEVIKKLLADRSPLVV 197 (968)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHhhHHHh-cCChhhHHHHHHHHHHHhcCCCCcch
Confidence 1112223345677888888888887764 34555555777777888889999999
Q ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhh
Q 000050 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2622)
Q Consensus 2130 ~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~ 2209 (2622)
-+|+.++..+|-.. .+.+..-.+.+++++-|-|+==+--....|.+.++..-.+ |..+. ..+...+.....
T Consensus 198 gsAv~AF~evCPer----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~--P~~~~---~~~e~n~~~~~~ 268 (968)
T KOG1060|consen 198 GSAVMAFEEVCPER----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD--PTVVD---SSLEDNGRSCNL 268 (968)
T ss_pred hHHHHHHHHhchhH----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC--ccccc---cccccCcccccc
Confidence 99998888877432 2223444566777765544322222334444443321110 00000 000000000000
Q ss_pred hhcCCccccccCCCCcCchhhHHHHHH----HHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCC
Q 000050 2210 KKKGGPILIPGFCLPKALQPLLPIFLQ----GLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 2285 (2622)
Q Consensus 2210 ~~~~~~~~l~g~~~~~~l~~ilp~ll~----~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~ 2285 (2622)
. ....+...|-...+=+..|++ .|.+.++.+-..++.+...++-.. -+..|..||+|.|.+ +
T Consensus 269 ~-----~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-------~~~~i~kaLvrLLrs--~ 334 (968)
T KOG1060|consen 269 K-----DKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-------QVTKIAKALVRLLRS--N 334 (968)
T ss_pred c-----ccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-------HHHHHHHHHHHHHhc--C
Confidence 0 001111122122333334443 344556666666666655554221 356678899999976 6
Q ss_pred HhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhH
Q 000050 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGI 2365 (2622)
Q Consensus 2286 ~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~v 2365 (2622)
..++...|..+..+..+-+..+.||+..+ | -+-+| ...++.-=...|..|+. ..++..+++++..-+++.|..+
T Consensus 335 ~~vqyvvL~nIa~~s~~~~~lF~P~lKsF---f-v~ssD-p~~vk~lKleiLs~La~-esni~~ILrE~q~YI~s~d~~f 408 (968)
T KOG1060|consen 335 REVQYVVLQNIATISIKRPTLFEPHLKSF---F-VRSSD-PTQVKILKLEILSNLAN-ESNISEILRELQTYIKSSDRSF 408 (968)
T ss_pred CcchhhhHHHHHHHHhcchhhhhhhhhce---E-eecCC-HHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhcCchhH
Confidence 78999999999999988887777765321 1 11122 23444444555555543 3578899999999999888778
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCC-ch
Q 000050 2366 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPS-WA 2444 (2622)
Q Consensus 2366 r~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~-~~ 2444 (2622)
-..+++|++.+....+. ..+.++.-|..++++.++.|-..++..|..|....|.+. .+++.++...+.+-. ..
T Consensus 409 aa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h-~~ii~~La~lldti~vp~ 482 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH-LEILFQLARLLDTILVPA 482 (968)
T ss_pred HHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH-HHHHHHHHHHhhhhhhhh
Confidence 88888888877665443 456778888888888899999999999999999888754 233333322111100 01
Q ss_pred hhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhh
Q 000050 2445 ARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503 (2622)
Q Consensus 2445 ~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~ 2503 (2622)
.|. ..++ ++.+.-+. .+....+++..+.....+++..++-..+.-..++....
T Consensus 483 ARA---~IiW-Lige~~e~--vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~ 535 (968)
T KOG1060|consen 483 ARA---GIIW-LIGEYCEI--VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTN 535 (968)
T ss_pred hhc---eeee-eehhhhhh--cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEec
Confidence 121 1111 11111112 23456678888888888888888888887777766553
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-05 Score=106.09 Aligned_cols=302 Identities=15% Similarity=0.148 Sum_probs=198.8
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHH
Q 000050 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVP 1502 (2622)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp 1502 (2622)
++.++.+.+.+.-+.++.+++.++....+.. ...+.+.+..+|.+++..+|..++..++.++.......... =.++++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 7888887776666788899999999887776 58888999999999999999999999999887654322211 257899
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHH
Q 000050 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2622)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2622)
.+..++.|++..|.+.|.++|..+++.- +..+.+++ + ...+.|.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~--------~--------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFD--------S--------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhC--------c--------------------------chHHHHH
Confidence 9999999999999999999999998642 22221100 0 0123334
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-CCCc--hh
Q 000050 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG-EENF--PD 1657 (2622)
Q Consensus 1583 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g-~~~~--~~ 1657 (2622)
..+...+..+|..+.+++..++..- .+...+.. .+++.+...+.+++.-+|..+...++.++..-. -+|+ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~S---~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASHS---PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhcC---HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 4444445567777777777776532 23333433 388888888899999999999999999998211 1122 35
Q ss_pred hHHHHHHHhhhcCChH-----HHHHHHHHHHHHHHHhchh----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhC
Q 000050 1658 LVSWLLDALKSDNSNV-----ERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2622)
Q Consensus 1658 ll~~Ll~~L~~~~~~~-----~r~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g 1728 (2622)
+++.+.+.+.+..... .-.+.....+.+... .+. ..+.++..+.+...+.+...+..|+.+++.++....
T Consensus 244 i~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 6777777775443222 111222233444433 222 224555566666778899999999999999986542
Q ss_pred c-ch-----hhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000050 1729 V-QF-----QNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2622)
Q Consensus 1729 ~-~f-----~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~ 1766 (2622)
+ .+ .+-+..++..+.........++|..++.++..++.
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 2 11 12233444444445555555566666666655543
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.002 Score=82.88 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhC--CCCchhhHH----HHH
Q 000050 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMG--EENFPDLVS----WLL 1663 (2622)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~-~~~vR~~a~~aL~~L~~~~g--~~~~~~ll~----~Ll 1663 (2622)
-.|+..+.++|...+. .-+.+ ..+.+-..+.++++|. +--||-++++++..++.-.. ++.|.+++| .++
T Consensus 502 iiRRRVa~ilg~Wvsv-q~~~e---~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf 577 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSV-QQKLE---LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF 577 (978)
T ss_pred HHHHHHHHHHhhhhhe-echHh---HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH
Confidence 4567777777776552 22222 2334566677778876 77899999999999887433 444444444 444
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHHHhchhH------HHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHh
Q 000050 1664 DALKSDNSNVERSGAAQGLSEVLAALGTVY------FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2622)
Q Consensus 1664 ~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~------l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ 1737 (2622)
+.++.-.....|......++.++...+... +-.++|.+.+... ..+-+|-+.+..+..+...+|..-.++.+-
T Consensus 578 kll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~f 656 (978)
T KOG1993|consen 578 KLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPF 656 (978)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHH
Confidence 455444434456666667777777666532 1234455544432 567789999999999999999643333333
Q ss_pred HHHHHHhhcCC---CChHHHHHHHHHHHHHHHH
Q 000050 1738 VLPAILDGLAD---ENESVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1738 ii~~ll~~L~d---~~~~VR~~al~al~~lv~~ 1767 (2622)
++|.+--+..- ++-..-+.++.-+.....+
T Consensus 657 L~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 657 LYPVIELSTDPSSPEHVYLLEDGMELWLTTLMN 689 (978)
T ss_pred HHHHHHHhcCCCCCceeehhhhHHHHHHHHHhc
Confidence 44544433322 2223344455555555443
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=113.08 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=141.4
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc
Q 000050 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2622)
Q Consensus 1775 ~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~ 1854 (2622)
.+.+.+.+...+.+|..|..+++-+..++..- . ..+ ....+.+.+ ..++..+.....
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~-----------~~~-----~~~~~~~~l-----~~~~~~i~~~l~ 63 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN--A-----------PED-----FPPDFVECL-----RQLLDAIIKQLS 63 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B---------------------HHHHHHH-----H---HHHHH-S-
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--C-----------ccc-----cHHHHHHHH-----HHhHHHHHHHHh
Confidence 34455555557889999999999999887541 0 000 001122221 234456666778
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhH-HHHHhhhcC
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLK 1933 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~l-lp~L~~~L~ 1933 (2622)
|....|-..|+.+++.++...+..+.++++.++|.+++.+++.+..+|..|..+|..+++.++ ..+.+ .+.+..+..
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLK 141 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999999999999999999999999999999998776 23455 777888899
Q ss_pred CCChhhHHhHHHHHHHHHHhhC--hhhHHH--hHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1934 DPSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~~~~--~~~l~~--~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
++++.+|..++.++..++...+ ...+.. .++.+.+.+.+.+.|++++||+.|..+|..+++..|..
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 9999999999999999998887 333332 45889999999999999999999999999999888764
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-05 Score=99.89 Aligned_cols=178 Identities=16% Similarity=0.076 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHh-hHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhC
Q 000050 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 2323 (2622)
Q Consensus 2245 ~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~-vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~ 2323 (2622)
+|..|-.+|..+++..| ..+...++.+...|...+.+..+.+ .-...++.+..+...++..++| +-++.+.+..++.
T Consensus 749 errgael~L~~l~~~fg-~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFG-GSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhh-HHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 57788889999999988 5666666666666666665432222 4455666666677677777777 5577778888999
Q ss_pred CCCHHHHHHHHHHHHHHHhccc--ChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 000050 2324 DSTRTVRSSAALALGKLSALST--RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2622)
Q Consensus 2324 d~~~~vR~~Aa~aLg~L~~~~~--~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2622)
.++..+|.+|++|+|.+.+... .....+..++..+.+.+.-+|.....-+-+++...+.....+|..-++.+|...++
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 9999999999999999965432 23345556666665555444444444444444444433346788999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCc
Q 000050 2402 HDDDHVRVSAASILGIMSQCMED 2424 (2622)
Q Consensus 2402 ~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2622)
|..+.+|.++.+++..+....|.
T Consensus 907 d~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred cchHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999877653
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=111.68 Aligned_cols=182 Identities=25% Similarity=0.313 Sum_probs=132.4
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHH-------HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH
Q 000050 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA-------TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2622)
Q Consensus 1347 ~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~-------~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~ 1419 (2622)
..+.+|..|..|..-|..++.+...... ...+++ .+...+.+. +..+-..|+.++..++..++..|.+|+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4567899999999999999987621111 112333 333444444 4556678999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhh-HHHHHhhccCCChhhHHHHHHHHHHHHhhCc---hhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV-LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ 1495 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i-lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p---~~l~~ 1495 (2622)
.++|.++..++|++..+|++|..++..++...+ ....+ ++.+..+..++++.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 999999999999999999999999999998876 12234 6777778999999999999999999887766 44433
Q ss_pred --hhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1496 --CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1496 --~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
.++.+++.+..++.|++++||++|-.++..+.+.+++
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999887763
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-05 Score=99.09 Aligned_cols=412 Identities=16% Similarity=0.163 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCCh
Q 000050 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2622)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~ 1937 (2622)
...+++--.+++.++.+ +. +..++|.+++...+.+.++|....--|-+.++.-++-.+ --+..+++.|.|+++
T Consensus 50 ~~KleAmKRIia~iA~G--~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-LSIntfQk~L~DpN~ 122 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKG--KD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-LSINTFQKALKDPNQ 122 (968)
T ss_pred HHHHHHHHHHHHHHhcC--Cc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-eeHHHHHhhhcCCcH
Confidence 34445444555555543 22 334455556666777877776655444444433222111 124567788888888
Q ss_pred hhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCC-
Q 000050 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ- 2016 (2622)
Q Consensus 1938 ~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~- 2016 (2622)
-+|.-|+..+..|- +.-..+-++-.+.++..|+.+.||..|+.|+-+++. .++...++++..+-..|.|..
T Consensus 123 LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~sp 194 (968)
T KOG1060|consen 123 LIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSP 194 (968)
T ss_pred HHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCC
Confidence 88888777776541 111224445556677788888888888888888865 333333344433333444433
Q ss_pred -chhHHHHHHHHHHhhhccccccc------hhhhhhcCCCchHHHHHHHHHHHHhCCCh---------------------
Q 000050 2017 -TSDTALDGLKQILSVRTTAVLPH------ILPKLVHLPLSAFNAHALGALAEVAGPGL--------------------- 2068 (2622)
Q Consensus 2017 -~~~~aL~~L~~il~~~~~~ilp~------Lip~L~~~~~~~~~~~aL~sLa~~~g~~l--------------------- 2068 (2622)
.-+.|+-++.++|-.+-+.+=++ ++|.+.+. ...-.+..|.+.+...|
T Consensus 195 lVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeW----gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~ 270 (968)
T KOG1060|consen 195 LVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEW----GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKD 270 (968)
T ss_pred cchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhh----hHHHHHHHHHHHHHhcCCCccccccccccCcccccccc
Confidence 23566667777664332211111 11111110 11222233322211110
Q ss_pred ------hh-----hHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 000050 2069 ------NF-----HLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137 (2622)
Q Consensus 2069 ------~~-----~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~ 2137 (2622)
.| -+.-++...--.+.+.++.+-.+++.++-.+. +......+...|+..+++ +..+|...+..+.
T Consensus 271 ~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA---P~~~~~~i~kaLvrLLrs-~~~vqyvvL~nIa 346 (968)
T KOG1060|consen 271 KYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA---PKNQVTKIAKALVRLLRS-NREVQYVVLQNIA 346 (968)
T ss_pred cccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC---CHHHHHHHHHHHHHHHhc-CCcchhhhHHHHH
Confidence 11 11122222222233444444333333333222 223566677777777765 4778888888888
Q ss_pred HHHhhccccccccHH------------------------------HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcc
Q 000050 2138 YFYKNSKLYLVDEAP------------------------------NMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2622)
Q Consensus 2138 ~l~~~~~~~l~~~~~------------------------------~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~ 2187 (2622)
.++...+.-|.+|+. .+++.+..-+.+.|.++..++..|+++......
T Consensus 347 ~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-- 424 (968)
T KOG1060|consen 347 TISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-- 424 (968)
T ss_pred HHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC--
Confidence 887766655555542 222222222233333333333333333322111
Q ss_pred chhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhh
Q 000050 2188 VQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 2267 (2622)
Q Consensus 2188 ~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p 2267 (2622)
.--...+.-|++.+.+.+..+-.++...|..++..-+.+.+
T Consensus 425 -------------------------------------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-- 465 (968)
T KOG1060|consen 425 -------------------------------------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-- 465 (968)
T ss_pred -------------------------------------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH--
Confidence 01122455566666666777777888888888876653321
Q ss_pred hhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000050 2268 FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 2340 (2622)
Q Consensus 2268 ~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L 2340 (2622)
.++.-|.+.+..-.-+.-|..+++.+|+.+...+. ..|.+.+.+.+.+.|+...||......-.+|
T Consensus 466 ---~ii~~La~lldti~vp~ARA~IiWLige~~e~vpr----i~PDVLR~laksFs~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 466 ---EILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR----IAPDVLRKLAKSFSDEGDEVKLQILNLSAKL 531 (968)
T ss_pred ---HHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch----hchHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence 12233445554333556788899999999887653 4689999999999999999999998877776
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00054 Score=91.81 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChh-HHHHH
Q 000050 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS-IRRSS 2132 (2622)
Q Consensus 2054 ~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~-vR~~A 2132 (2622)
...+.+++..+|..+.+ +-+.+|.++......+..+|..+..|++.+......+....++..++..+++.+.- .|+.+
T Consensus 797 ~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a 875 (1549)
T KOG0392|consen 797 FEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGA 875 (1549)
T ss_pred HHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhH
Confidence 34555666666777777 77888999999999999999999999999987666666777777788788775544 45566
Q ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcC
Q 000050 2133 AYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2622)
Q Consensus 2133 ~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~ 2185 (2622)
...+..+.......+.+|.+-+++.|+..+.|....||.++-.++..++...+
T Consensus 876 ~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 876 DELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred HHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 66677777777778889999999999999999999999999999999987665
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.01 Score=88.54 Aligned_cols=459 Identities=19% Similarity=0.247 Sum_probs=215.2
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhh
Q 000050 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLP 1922 (2622)
Q Consensus 1844 ~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~ 1922 (2622)
..+..++..+.|....++.++...++.++...|..+-+.+.........-+. +....+......-+..++......+.+
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~ 644 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISP 644 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHh
Confidence 3455567778899999999999999999988886554444433222222111 222222233333333333322222223
Q ss_pred hH---HHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCh
Q 000050 1923 SI---IPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1923 ~l---lp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
.+ +-.+...+.+++..+-..+...+++++...+ ..+..+.+.+.+.+.+.+.|. ...-|.++.++++.+....|.
T Consensus 645 ~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~ 723 (2341)
T KOG0891|consen 645 YVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-EEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGY 723 (2341)
T ss_pred hcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-chhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccce
Confidence 22 2333334556666666777788888876544 445555567777777777665 445567777888888766554
Q ss_pred hhh-----hhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHh
Q 000050 1999 QAI-----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073 (2622)
Q Consensus 1999 ~~~-----~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~ 2073 (2622)
... +.++..+.+.+..+. ++..+..++..+. .+|. ..||..
T Consensus 724 ~v~p~~~~P~ll~~l~~~~~te~--------------------------------~~~ir~~~v~~~g-~~g~-~d~~~~ 769 (2341)
T KOG0891|consen 724 VVDPYLDYPELLDILINILKTEQ--------------------------------SSTIRREAIRLLG-LLGA-LDPYKH 769 (2341)
T ss_pred EecccccChHHHHHHHHHHhHhh--------------------------------hhHHHHHHHHHhh-hhcc-cchhHH
Confidence 211 122222222222111 1111111222111 1121 122222
Q ss_pred hhHHHH--HHhcCC-CCH-HHHH-HHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHH-HHHHHHHHHHhhccccc
Q 000050 2074 TILPAL--LSAMGD-DDM-DVQS-LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR-SSAYLIGYFYKNSKLYL 2147 (2622)
Q Consensus 2074 ~il~~L--l~~l~~-~~~-~vr~-~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~-~A~~~L~~l~~~~~~~l 2147 (2622)
...... .+.... ... ..+. ....... ..++-....-+..+...++|....... ..+.+.-.++...+.+.
T Consensus 770 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~----~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~ 845 (2341)
T KOG0891|consen 770 KVTEGTSASKISSEQIKSDIDISLLESGVNP----SNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKC 845 (2341)
T ss_pred HHHhhhhhHhhhhccccccchHHHHHhhhhh----hhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccch
Confidence 111111 111110 000 0111 0000000 001111111222444445554333332 33344455565556666
Q ss_pred cccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2148 ~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
..+.+.+++.++..........+.....-+....-. .+..+
T Consensus 846 ~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~---------------------------------------~~~h~ 886 (2341)
T KOG0891|consen 846 VLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAI---------------------------------------VRQHI 886 (2341)
T ss_pred hhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhc---------------------------------------cchhH
Confidence 777777777776654311111111110000000000 00111
Q ss_pred hhhHHHHHHHHccC---CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcC
Q 000050 2228 QPLLPIFLQGLISG---SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~---~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~ 2304 (2622)
.+.++.....+... +..........+.++....+ ..++.+++....-.+... .......+......+..+. ..|
T Consensus 887 ~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~-~~f~~~l~~~~~~~l~~~-~~~~s~~~~~~~~~~~~~~-~~~ 963 (2341)
T KOG0891|consen 887 RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALG-GEFKKYLPELLPTMLTVL-QHDKSKDRVVSRKVLQSLQ-KFG 963 (2341)
T ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-hHHHHhhhhhccchheee-cccccchHHHHHHhhHHHH-hcC
Confidence 11222222212111 12222233444455555555 567777776655555544 3223333333333333332 234
Q ss_pred CCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhc---ccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhh
Q 000050 2305 IALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379 (2622)
Q Consensus 2305 ~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~---~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2622)
.....+..-+.+..++.+.++ ...+|..+..+.+.+..- ..........++..+..+ .+++..+...+..++..
T Consensus 964 ~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~ 1042 (2341)
T KOG0891|consen 964 SNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQ 1042 (2341)
T ss_pred ccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHh
Confidence 444455566777888888887 788999999999988431 111112233345555555 78888888888888887
Q ss_pred cCCCC
Q 000050 2380 AGKSV 2384 (2622)
Q Consensus 2380 ~g~~~ 2384 (2622)
.|...
T Consensus 1043 ~~~~~ 1047 (2341)
T KOG0891|consen 1043 LGKDF 1047 (2341)
T ss_pred hcCce
Confidence 77655
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00086 Score=85.30 Aligned_cols=253 Identities=13% Similarity=0.169 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000050 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2622)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2622)
....+-+-++..++...+.||..|...+-.++-..+ +.++..+|.+.+.|++++..+..+|+..+..+|...|+-..
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-- 217 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-- 217 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--
Confidence 445788889999999999999999888877777664 46788999999999999999999999999999998887543
Q ss_pred hhhhHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcC-ChhH-HhHHHHHHhhcCCCChh--HHHHHHHHHhcccccc--C
Q 000050 1497 LPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNT--V 1569 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~-~~~i-~~ilp~Ll~~l~d~~~~--~r~al~~L~~~~~~~~--~ 1569 (2622)
.+-|.+++++.++ |..|= .+-|.-|+...+ .|.+ ..++|.|.+.+...... +=+|+.+++....... .
T Consensus 218 --~LAP~ffkllttSsNNWmL---IKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 218 --QLAPLFYKLLVTSSNNWVL---IKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred --cccHHHHHHHhccCCCeeh---HHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 3556677777654 33222 333444443322 2333 56777777776544322 1268887765433222 3
Q ss_pred ChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000050 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1570 ~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
...+....+..|...+.|.+++.|.-++-+++.++. +.|+.+..+. ..+.++|.|.++.+|-.|...+-.++.
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs- 365 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS- 365 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh-
Confidence 345667778888888899999999999999999887 4555544443 455678899999999999888877765
Q ss_pred hCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 000050 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2622)
Q Consensus 1650 ~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~ 1686 (2622)
++.+.+++..||..+...+...-|-..+..+-++|
T Consensus 366 --kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 366 --KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred --hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 45677888888877765544333444333333333
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-06 Score=108.60 Aligned_cols=347 Identities=22% Similarity=0.248 Sum_probs=227.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCch-H
Q 000050 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-P 2312 (2622)
Q Consensus 2234 ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l-~ 2312 (2622)
+...+.+.+.++-..++.+|..+.+...+..+ .+++.+.|.+.|.. .++.||..++..++.+.+.......... +
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 66777777777778888889998877665544 45556667888876 4789999999999888764432222111 4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhH-----HHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChH
Q 000050 2313 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL-----VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387 (2622)
Q Consensus 2313 ~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~l-----l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~ 2387 (2622)
.+.+.++.++.|++..|...|+.+|..++...+..+.+ +..|...+..++..+|..+++.+.++........ .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--E 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 67888999999999999999999999998765555555 5666666666577888888888877765432222 2
Q ss_pred HHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHH-----HHHHHHHhhc---CCCC-ch--hhHhHHHHHH
Q 000050 2388 VKI--RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA-----DLLQELLNLA---SSPS-WA--ARHGSVLVFA 2454 (2622)
Q Consensus 2388 ~~~--~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~-----~~l~~ll~~~---~~~~-~~--~r~~~~~~L~ 2454 (2622)
+.. .+++.+...+.++|.-++.++.++++.++. .+. ... .+++.+.+.+ ..+. .. ..-+.....+
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~-g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPH-GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-Chh-HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 222 377788888888777799999999999998 322 211 1222332222 1111 10 0011112333
Q ss_pred HHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcC---CCCchhhHhHHHHHHhhcCCCCHH
Q 000050 2455 TFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG---PANTTVVVDILASVVSALHDDSSE 2531 (2622)
Q Consensus 2455 ~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~---~~~~~~l~~~l~~l~~~l~d~s~d 2531 (2622)
.+....|..+. .....++..+.+...+.++..+..|+.++|.+......+. ..........+..+.......+.|
T Consensus 275 ~la~~~~~~v~--~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 275 NLARVSPQEVL--ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHhcChHHHH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 33333455443 2345677888888899999999999999997743321100 000123456677777778888899
Q ss_pred HHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhh-------------hcCCcchhhchhHHHHHHHhccccc
Q 000050 2532 VRRRALSALKSVAKANPSAIMVHVALFGPALAEC-------------LKDGSTPVRLAAERCAVHAFQLTRG 2590 (2622)
Q Consensus 2532 vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~-------------~~~~~~~vk~aae~a~~~~~~~~~~ 2590 (2622)
+|..++.++..+-...++.-...+..+...+|+. ++-|=..+|.|+.+-+.+++.-+-+
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 9999999999997665542222233444444444 4445566899998888888765544
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-05 Score=100.55 Aligned_cols=385 Identities=16% Similarity=0.207 Sum_probs=231.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHH
Q 000050 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2622)
Q Consensus 2075 il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~i 2154 (2622)
+.+.+.+-|+..+.-+...|+.+++.++ +++..+.+.|.+.+.+++.++.+|..|+.|...+.+..+.- ...+
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l----~e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL----VEHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH----HHHh
Confidence 4455556677777777777777777664 56778899999999999999999999999999998776533 2345
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc------cchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCch
Q 000050 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPK------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2622)
Q Consensus 2155 l~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~------~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~ 2228 (2622)
+.....++.+.+..|.-+...-+..+++..+. +..+.++..+++.....-.. ...+.|.+.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~ysp--------eydv~gi~d----- 247 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSP--------EYDVHGISD----- 247 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------ccCccCCCc-----
Confidence 56666777888888888777777777776442 33455555555544321111 133444443
Q ss_pred hhHHH----HHHHHccCCHHHHHHHHHHHHHHHhhcCh------hhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHH
Q 000050 2229 PLLPI----FLQGLISGSAELREQAALGLGELIEVTSE------QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSI 2298 (2622)
Q Consensus 2229 ~ilp~----ll~~L~~~~~~~r~~aa~~L~~l~~~~~~------~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~ 2298 (2622)
|++.+ ++..|..++.+..+.....|+.++..+.. ..+-..|..| +.=+.+...|..|+.+||.
T Consensus 248 PFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI-------~~I~~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 248 PFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI-------MDIRSNSGLRVLAINILGK 320 (866)
T ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH-------HhccCCchHHHHHHHHHHH
Confidence 33332 23445556666666667777777765531 1122222111 1111244556666666665
Q ss_pred HHHhcCCCcc---------------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCH
Q 000050 2299 IIRKGGIALK---------------PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363 (2622)
Q Consensus 2299 L~~~~~~~l~---------------p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~ 2363 (2622)
++..-+..++ .-+.+-+.+++.||+|++..+|.+|.+-+-.|.. ..++..++.+|+.-+...|+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVKELLEFLESSDE 399 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHhccH
Confidence 5443222111 1234567799999999999999999998877754 45788899999998877777
Q ss_pred hHHHHHHHHHHHHHh------------------hcCCCCChHHHHHHHHHHHHhhcC---------------------CC
Q 000050 2364 GIREAILTALKGVLK------------------HAGKSVSSAVKIRVYSVLKDLVYH---------------------DD 2404 (2622)
Q Consensus 2364 ~vr~~~l~AL~~vi~------------------~~g~~~~~~~~~~i~~~L~~~l~~---------------------~~ 2404 (2622)
+.|.....-+.++.. .+|.-+.+.....++.++.+.+.+ +.
T Consensus 400 ~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~ 479 (866)
T KOG1062|consen 400 DFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQ 479 (866)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhh
Confidence 777666555555544 344444444444444444333211 22
Q ss_pred HHHHHHHHHHHHHHHhhc------------CchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000050 2405 DHVRVSAASILGIMSQCM------------EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2622)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~~------------~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~ 2472 (2622)
+.....+.-|||.-+..+ .++++...+.+++....+. ..++..+..++..+....+.. .++
T Consensus 480 e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al~KLSsr~~s~------~~r 552 (866)
T KOG1062|consen 480 EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTALLKLSSRFHSS------SER 552 (866)
T ss_pred hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhcccc------HHH
Confidence 334556778888776222 1234556666665543333 333433333443333332221 456
Q ss_pred HHHHHHhhhccCChhHHHhHHH
Q 000050 2473 ILDRLKSSLKDEKFPLREASTK 2494 (2622)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~ 2494 (2622)
+-..+.+...+-+.+++..|++
T Consensus 553 i~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 553 IKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHHHHHHhcccccHHHHHHHHH
Confidence 6666777777778888888776
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.013 Score=81.10 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhccCCChh
Q 000050 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWR 1473 (2622)
Q Consensus 1395 ~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~ 1473 (2622)
.+..+...+-.++...+ |..-+...+..++..++.+...+|..|..|+..+++.=+.- ..+.+...+...+.+....
T Consensus 793 d~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred cchhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhH
Confidence 34455555555554332 33333444555667788999999999999999997743322 1245555666778888999
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-hhHHhHHHHHHhhcCCCChh
Q 000050 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDH 1552 (2622)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ilp~Ll~~l~d~~~~ 1552 (2622)
+|.+|++++|...-+.|+...+++..| .+-..|+...||+.+.+-+..++...++ +.+..++-.++....|....
T Consensus 871 VREAaldLvGrfvl~~~e~~~qyY~~i----~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~ 946 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQYYDQI----IERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGN 946 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHH----HhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhH
Confidence 999999999998888777766655555 4557899999999999999999986543 23445555666666676554
Q ss_pred HH
Q 000050 1553 TK 1554 (2622)
Q Consensus 1553 ~r 1554 (2622)
+.
T Consensus 947 I~ 948 (1692)
T KOG1020|consen 947 IK 948 (1692)
T ss_pred HH
Confidence 43
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=100.56 Aligned_cols=307 Identities=14% Similarity=0.142 Sum_probs=202.3
Q ss_pred HhhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC--
Q 000050 1457 KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-- 1532 (2622)
Q Consensus 1457 ~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-- 1532 (2622)
..++|.+++.+++ +.--.+..|.++|.+++.+...|..... ...+|.+.++|.+++..||+.++||||+++..-..
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 4567888888854 3345567889999999987766643332 35689999999999999999999999999854221
Q ss_pred hhH--HhHHHHHHhhcCCCC---hhHHHHHHHHHhcc--ccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhh
Q 000050 1533 PEI--ASLVPTLLMGLTDPN---DHTKYSLDILLQTT--FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2622)
Q Consensus 1533 ~~i--~~ilp~Ll~~l~d~~---~~~r~al~~L~~~~--~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 1605 (2622)
.++ ...+..++..+.... ..+|.+--+|.... --+.-+-......+|.|.+.+...++++-..|+.+++.+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 111 122333333332221 22344433433210 00111224566789999999999999999999999998876
Q ss_pred hcCCCCcccchHh-hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHH
Q 000050 1606 LVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2622)
Q Consensus 1606 ~~~~~~~l~~~l~-~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~ 1680 (2622)
.. .+.+...++ .+++.|.++|.+++..++.-+.+.+|.++...... .--..++.+...|.+.. ...|..++.
T Consensus 273 g~--~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEaCW 349 (526)
T COG5064 273 GP--NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEACW 349 (526)
T ss_pred Cc--HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hhhhhhhhe
Confidence 32 122222222 46788999999999999999999999998754432 11234455544454443 468899999
Q ss_pred HHHHHHHHhchhH---H-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhh-C-cchhhhHHh--HHHHHHhhcCCCChH
Q 000050 1681 GLSEVLAALGTVY---F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL-G-VQFQNYLQQ--VLPAILDGLADENES 1752 (2622)
Q Consensus 1681 ~L~~i~~~~g~~~---l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~-g-~~f~p~l~~--ii~~ll~~L~d~~~~ 1752 (2622)
.++.+..+-.... . ..++|.++..+...+...|..++.++....... + ++...|+-. ++.++..+|.-.+..
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk 429 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK 429 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc
Confidence 9988866443321 1 467899999998888999999988887665332 1 344455432 677777777765555
Q ss_pred HHHHHHHHHHHHHH
Q 000050 1753 VRDAALGAGHVLVE 1766 (2622)
Q Consensus 1753 VR~~al~al~~lv~ 1766 (2622)
|-+.++++++.+.+
T Consensus 430 iiev~LD~~eniLk 443 (526)
T COG5064 430 IIEVALDAIENILK 443 (526)
T ss_pred chhhhHHHHHHHHh
Confidence 66667777776654
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.5e-07 Score=101.92 Aligned_cols=308 Identities=18% Similarity=0.170 Sum_probs=199.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCcc--chhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS--SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~--~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~ 1415 (2622)
.++.+.+.|.+.+..-....|+++|..++.+.... .+...+.+|.+.+++.+. +..+|+.++.++|.++... ..+.
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS-~~~R 192 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDS-EGCR 192 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCc-hhHH
Confidence 45666666644333345678999999999876432 222336788888888887 6889999999999987422 2355
Q ss_pred hHHHH--HHHHHHHHcCCCC---HHHHHHHHHHHHHHHHhhcHH---hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHh
Q 000050 1416 PYVIQ--MLPLLLVAFSDQV---VAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2622)
Q Consensus 1416 ~~v~~--ilp~ll~~l~D~~---~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2622)
+|+-+ .+..++..+.... ..+|.++|.....+-..-++. .+.+.+|.|.+.+.+.+..+-..||++++.+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 66653 5666666665433 457877776665554433332 357889999998888888888899999998887
Q ss_pred hCchhhhhhhh-hhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC--hhH--HhHHHHHHhhcCCCChhHH-HHHHHHH
Q 000050 1488 CAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2622)
Q Consensus 1488 ~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~ilp~Ll~~l~d~~~~~r-~al~~L~ 1561 (2622)
+..+.+...+. .+.+.|+++|.+++..|+.-|.+++|+++..-.. ..+ -..++.|...++.|.+.+| +++-++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 76555544443 4667899999999999999999999998754221 111 3456777777888888887 5666554
Q ss_pred hccccc--cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH--hhhHHHHHHHhcCCCHHHHH
Q 000050 1562 QTTFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRS 1637 (2622)
Q Consensus 1562 ~~~~~~--~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d~~~~vR~ 1637 (2622)
.++... .+..-.-..++|.|...+..-+..+|+.||.++.+....-....+...|+ ...+..|..+|.-.+..+-+
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie 432 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE 432 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence 422211 11122224578888888888888999999999998765422212333332 22344444444433333333
Q ss_pred HHHHHHHHHH
Q 000050 1638 VAARAIGSLI 1647 (2622)
Q Consensus 1638 ~a~~aL~~L~ 1647 (2622)
.+..|+..+.
T Consensus 433 v~LD~~eniL 442 (526)
T COG5064 433 VALDAIENIL 442 (526)
T ss_pred hhHHHHHHHH
Confidence 4444444433
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.2e-06 Score=96.16 Aligned_cols=375 Identities=17% Similarity=0.120 Sum_probs=232.8
Q ss_pred CCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHH
Q 000050 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLV 1427 (2622)
Q Consensus 1349 ~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~-~~~~v~~ilp~ll~ 1427 (2622)
++.....+.|+.+.+.+.... ...+. .+....+.-.+++. ++...-+|..++|.++-..++. +.--+..+=+.+++
T Consensus 58 SDnlnlqrsaalafAeitek~-vr~Vs-res~epvl~llqs~-d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~q 134 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITEKG-VRRVS-RESNEPVLALLQSC-DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQ 134 (550)
T ss_pred ccccccchHHHHHHHHHHHHH-HHHhh-hhhhhHHHHHHhCc-chhhhhhhhhhhccceeccCCceEEEeccChHHHHHH
Confidence 333344555666666554321 11111 13344455555655 5667778888888887666531 11112234445666
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHh--H--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHH
Q 000050 1428 AFSDQVVAVREAAECAARAMMSQLSAQG--V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2622)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~--v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~ 1503 (2622)
.++|. ..||..+..|+-.++.. ++.. + ..-+.++...-.+++-+++..+..+|.+|...-...-.-....-+|.
T Consensus 135 mmtd~-vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpv 212 (550)
T KOG4224|consen 135 MMTDG-VEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPV 212 (550)
T ss_pred hcCCC-cEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchh
Confidence 66665 45666666666666543 2221 1 23344555544567779999999999888754322211122455788
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh
Q 000050 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2622)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~ 1583 (2622)
++.++...++.||..|+.+++.++-.-.+ | +.+. ..-+.++|.+..
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd~~~---------------------R---k~La----------qaep~lv~~Lv~ 258 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVDRRA---------------------R---KILA----------QAEPKLVPALVD 258 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhhHHH---------------------H---HHHH----------hcccchHHHHHH
Confidence 89999999999999999999999743211 1 1111 112347788888
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHH
Q 000050 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVS 1660 (2622)
Q Consensus 1584 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~ 1660 (2622)
.+++.+++++-.|.-++++++.- ......-.-..-+|.+.++++++.-..-.....|+..+.-.-+.+ .-..++.
T Consensus 259 Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~ 336 (550)
T KOG4224|consen 259 LMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLR 336 (550)
T ss_pred HHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchh
Confidence 88888889999999999988763 111111111235688888898887666667777887776544433 1124555
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HH-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHH
Q 000050 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2622)
Q Consensus 1661 ~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~ 1736 (2622)
.|...|...++...+..+...+-.++...... .. ...+|.+...+.+..-.+|...-.++..++-. +.+..++.
T Consensus 337 pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~ll 414 (550)
T KOG4224|consen 337 PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALL 414 (550)
T ss_pred HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHh
Confidence 56666766655556666766666665543322 11 34578888888888888888777777776533 33344443
Q ss_pred --hHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000050 1737 --QVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2622)
Q Consensus 1737 --~ii~~ll~~L~d~~~~VR~~al~al~~lv~ 1766 (2622)
.++|.++..+.++.++||..+..|+..+..
T Consensus 415 d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 415 DSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred hcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 389999999999999999999988877654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-06 Score=112.74 Aligned_cols=280 Identities=18% Similarity=0.295 Sum_probs=183.5
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-hhHHhHHHHHHhhcCCCCh
Q 000050 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPND 1551 (2622)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ilp~Ll~~l~d~~~ 1551 (2622)
..|..|+++|..++.-.... ..+..++|.++.++.|+...||..|..+|..+...+++ +..+.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da-------------- 501 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA-------------- 501 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc--------------
Confidence 56778888888777533322 34788999999999999999999999999888765542 10000
Q ss_pred hHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHH--h
Q 000050 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV--L 1628 (2622)
Q Consensus 1552 ~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~--L 1628 (2622)
. -| ...+.|.|...+.| ....+|..-+..++.++..... |+. +...+... +
T Consensus 502 n-----------iF--------~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r------Fle-~~q~~~~~g~~ 555 (1431)
T KOG1240|consen 502 N-----------IF--------PEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR------FLE-LTQELRQAGML 555 (1431)
T ss_pred h-----------hh--------HhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH------HHH-HHHHHHhcccc
Confidence 0 01 11234444444444 3344555555555555543210 111 11111111 3
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-HhHhHHHHHh
Q 000050 1629 VDPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRN 1704 (2622)
Q Consensus 1629 ~d~~~~vR~~a~~aL~~L~~~~g~~~---~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-~~llp~l~~~ 1704 (2622)
++++.+ ...+..++.. +...+..+...|-.+.+..+|+...+.|+.++.-+|++.- +-+++.++..
T Consensus 556 n~~nse----------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTf 625 (1431)
T KOG1240|consen 556 NDPNSE----------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITF 625 (1431)
T ss_pred cCcccc----------cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Confidence 344332 0011111111 2233444555565666667888888889999999998765 5578899999
Q ss_pred ccCCChhhHHHHHHHHHHhhhhhCcc-hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh--hhchhhhhHHHHh
Q 000050 1705 CSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY--ATTSLPLLLPAVE 1781 (2622)
Q Consensus 1705 l~~~~~~vR~~al~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~--~~~~i~~llp~l~ 1781 (2622)
+++.+|.+|-+.+.-+..++...|.. ...| ++|.+.++|.|..|.|-..|+.++..+++.. .+.++..++..+.
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~sey---llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~ 702 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY---LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVL 702 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeHHHH---HHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence 99999999999999888888888864 4444 7899999999999999999999999888753 3445556666666
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhc
Q 000050 1782 DGIFNDNWRIRQSSVELLGDLLFKVA 1807 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~ll~~~~ 1807 (2622)
..+-..+--+|.+++..+.....+++
T Consensus 703 PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 703 PLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred hheeCchHHHHHHHHHHHHHHHhhhh
Confidence 67777887799999888887766543
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.023 Score=80.34 Aligned_cols=463 Identities=18% Similarity=0.177 Sum_probs=257.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCC-CChhhHHhHHHHHHHHHHhhChhhHHHhHH
Q 000050 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2622)
Q Consensus 1887 l~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d-~~~~vR~~a~~~L~~li~~~~~~~l~~~l~ 1964 (2622)
...++..+..+++..|..+..+++.++...+.. +...+...+...+.+ .++-.|.+-..++|.+-+..|.-.-.+++.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 344555666788889999999999999888776 455566666655654 577888999999999988877666667888
Q ss_pred hHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhh---hhhhHHHHHHhcccCCch-hHHHHHHHHHHhhhccccccc
Q 000050 1965 ELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPH 2039 (2622)
Q Consensus 1965 ~ll~~l~~~L~d~d-~~VR~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~-~~aL~~L~~il~~~~~~ilp~ 2039 (2622)
+-+..+.....|+. |.|+..+..++..+.+..|+.. ....+..++..|.+.... ..-..++...+ .+
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~-------~~- 1029 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF-------NG- 1029 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc-------cc-
Confidence 88888888888885 5999999999998887776532 233333334444332211 00111111111 00
Q ss_pred hhhhhhcCCCchHHHHHHHHHHHHhCCChhhhH---------hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh-hc
Q 000050 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL---------GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EG 2109 (2622)
Q Consensus 2040 Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l---------~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~-~~ 2109 (2622)
-...+.+..+.|+.+.+.. ...+-...=.+..+++.++..++.|+.++-..... -+
T Consensus 1030 --------------~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n 1095 (2067)
T KOG1822|consen 1030 --------------DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN 1095 (2067)
T ss_pred --------------chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc
Confidence 0112233333333322221 11111111123556777888888898887553332 34
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccccccc-----------------H---HHHHHHHHHHhc-CCChh
Q 000050 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE-----------------A---PNMISTLIVLLS-DSDST 2168 (2622)
Q Consensus 2110 l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~-----------------~---~~il~~L~~~l~-d~d~~ 2168 (2622)
...++..+...+.+..--.|.++..++..+....-.....| . ..+=..++.+++ ..|..
T Consensus 1096 ~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~ 1175 (2067)
T KOG1822|consen 1096 LDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNK 1175 (2067)
T ss_pred HHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHH
Confidence 77888888888877766677776766666544321111111 0 011223444554 45667
Q ss_pred HHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCC---CC---cCchhhHHHHH------H
Q 000050 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC---LP---KALQPLLPIFL------Q 2236 (2622)
Q Consensus 2169 V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~---~~---~~l~~ilp~ll------~ 2236 (2622)
.+....+.|.++......+.+...+....+.+....+.... ..+.|.. .+ .+-...++.-. +
T Consensus 1176 l~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~~~~~~s~~------~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~ 1249 (2067)
T KOG1822|consen 1176 LLKNILETLSRMLNSLADELLSSWLMLLKDLLQAAEDFSAS------KELSGEKDEEDEEQESGDDDTVLTTVSRTDDSK 1249 (2067)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccc------ccccccccccchhhcccchhhHHhhhccccccC
Confidence 77778888888666554444433333333333311110000 0011100 00 01111222111 1
Q ss_pred HHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhh-------------------hhHHHHHh---hcCCCCHhhHHHHHH
Q 000050 2237 GLISGSAELREQAALGLGELIEVTSEQSLKEFVIP-------------------ITGPLIRI---IGDRFPWQVKSAILS 2294 (2622)
Q Consensus 2237 ~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-------------------i~~~Li~~---l~~~~~~~vk~~al~ 2294 (2622)
.+..+-|..|..++.|+.+++..+. ....|.+. -..-|+|. .+-..+...|..-++
T Consensus 1250 p~~qprW~Trvfaa~cv~r~i~~c~--a~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~ 1327 (2067)
T KOG1822|consen 1250 PLVQPRWPTRVFAAECVLRIINVCE--AVSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLE 1327 (2067)
T ss_pred CccccccchHHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHH
Confidence 2233457778888888887765553 22222221 01113332 122236779999999
Q ss_pred HHHHHHHhcCCCccC----------chHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcc-----cChhhHHHHHHHhh
Q 000050 2295 TLSIIIRKGGIALKP----------FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALS-----TRVDPLVGDLLSSL 2358 (2622)
Q Consensus 2295 ~L~~L~~~~~~~l~p----------~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~-----~~~~~ll~~Ll~~l 2358 (2622)
.|..+..+....-.| |.+|+...+..++.|. +++|-..|.......+..+ .++..+..-|+..+
T Consensus 1328 ~L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~dts~dv~a~acqVcS~wigsgv~~dl~dl~rVhqLLvssl 1407 (2067)
T KOG1822|consen 1328 SLEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDDTSPDVTAKACQVCSTWIGSGVARDLSDLSRVHQLLVSSL 1407 (2067)
T ss_pred HHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhchhccCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhh
Confidence 999988866433333 4455566666666664 8899988888777764432 12334444555555
Q ss_pred hcCC---------------HhHHHHHHHHHHHHHhh
Q 000050 2359 QVSD---------------AGIREAILTALKGVLKH 2379 (2622)
Q Consensus 2359 ~~~d---------------~~vr~~~l~AL~~vi~~ 2379 (2622)
.... .-.+-+++.|..|+...
T Consensus 1408 ~k~~~g~~~s~~ly~esa~tme~LaiLkAWAEvyv~ 1443 (2067)
T KOG1822|consen 1408 DKSQSGKIISSQLYNESASTMEKLAILKAWAEVYVV 1443 (2067)
T ss_pred cccCccccccceeecchHHHHHHHHHHHHHHHHHHH
Confidence 4321 12356678999988643
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00083 Score=86.91 Aligned_cols=340 Identities=16% Similarity=0.190 Sum_probs=188.6
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Q 000050 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 1426 (2622)
Q Consensus 1347 ~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll 1426 (2622)
..+++....|.+..+...+.... .++.-.+...++++-+...+-...+|+..++..++. .....+.|-+-
T Consensus 79 ias~~f~dKRiGYLaamLlLdE~-------qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~---EmardlapeVe 148 (866)
T KOG1062|consen 79 IASDNFLDKRIGYLAAMLLLDER-------QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMARDLAPEVE 148 (866)
T ss_pred hcCCCchHHHHHHHHHHHHhccc-------hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhHHhhHHHH
Confidence 34555666666666655555332 233333444443322111222344455555544443 23457788888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhh
Q 000050 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2622)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~ 1506 (2622)
..++.+++.||+.|..|+-.+....+ ..++.+++..-+.|.+++..+-.+++.++..|+...|+.+. ++.+++|.++.
T Consensus 149 ~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~ 226 (866)
T KOG1062|consen 149 RLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVK 226 (866)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHH
Confidence 88888999999999888777755443 33455566666666666655555566666666554443221 22223333222
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc
Q 000050 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2622)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~ 1586 (2622)
.|++ +...- ..|. --++.+.+|.++.-+=.+.+.+.
T Consensus 227 iLk~---------------l~~~~----------------yspe-------------ydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 227 ILKQ---------------LTNSG----------------YSPE-------------YDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHH---------------HhcCC----------------CCCc-------------cCccCCCchHHHHHHHHHHHHhc
Confidence 2211 11000 0000 01233445555544444555555
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHH
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDA 1665 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~ 1665 (2622)
..+.+....-.++++.++......+... -.-+...+...+. .+++.+|..|+.+||.+...-....-=--+..|+..
T Consensus 263 q~d~daSd~M~DiLaqvatntdsskN~G--nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~ 340 (866)
T KOG1062|consen 263 QNDADASDLMNDILAQVATNTDSSKNAG--NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRV 340 (866)
T ss_pred CCCccHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhh
Confidence 5555666666777777776532222211 0113333333333 567899999999999987643221000113345555
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhh
Q 000050 1666 LKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2622)
Q Consensus 1666 L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2622)
++.+.....|. -..|++++++++..+|.-++.+.-.+... ..+..++..++.+
T Consensus 341 V~~d~~avqrH---------------------r~tIleCL~DpD~SIkrralELs~~lvn~------~Nv~~mv~eLl~f 393 (866)
T KOG1062|consen 341 VQQDPTAVQRH---------------------RSTILECLKDPDVSIKRRALELSYALVNE------SNVRVMVKELLEF 393 (866)
T ss_pred hcCCcHHHHHH---------------------HHHHHHHhcCCcHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHH
Confidence 55554333332 23677888999999999999888777653 3456677888888
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhc
Q 000050 1746 LADENESVRDAALGAGHVLVEHYATT 1771 (2622)
Q Consensus 1746 L~d~~~~VR~~al~al~~lv~~~~~~ 1771 (2622)
|...+++.+.....-+..+.+.|+++
T Consensus 394 L~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 394 LESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 88778888887777777777777654
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.022 Score=78.99 Aligned_cols=298 Identities=17% Similarity=0.163 Sum_probs=166.4
Q ss_pred HHHHHHHHhhcChhhhh-hhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHH
Q 000050 2250 ALGLGELIEVTSEQSLK-EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRT 2328 (2622)
Q Consensus 2250 a~~L~~l~~~~~~~~l~-p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~ 2328 (2622)
..+|...++..+ .-+- .|+..+-|.|..........++-..++..+...+......-..|+..|-+.+.+.+--.+-.
T Consensus 1058 lstL~~FskirP-~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a 1136 (1692)
T KOG1020|consen 1058 LSTLFVFSKIRP-QLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMA 1136 (1692)
T ss_pred HHHHHHHHhcCc-hhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchH
Confidence 455566665554 3333 55555544443332222233444555555555444444444457778888888877766777
Q ss_pred HHHHHHHHHHHHHhc--cc--ChhhHHHHHH---HhhhcC---C--H---hHHHHHHHHHHHHHhhc--------CCC--
Q 000050 2329 VRSSAALALGKLSAL--ST--RVDPLVGDLL---SSLQVS---D--A---GIREAILTALKGVLKHA--------GKS-- 2383 (2622)
Q Consensus 2329 vR~~Aa~aLg~L~~~--~~--~~~~ll~~Ll---~~l~~~---d--~---~vr~~~l~AL~~vi~~~--------g~~-- 2383 (2622)
.-..|..|+|.++.- ++ .+...+.... +.++.+ + . ..-...+-.++-++... |..
T Consensus 1137 ~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~ 1216 (1692)
T KOG1020|consen 1137 TVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFL 1216 (1692)
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccch
Confidence 777888999998652 11 1222233222 222222 1 0 11122233444444421 111
Q ss_pred -CChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchH----HHHHHHHHHhhcCCCCchhhHhHHHHHHHHHh
Q 000050 2384 -VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ----LADLLQELLNLASSPSWAARHGSVLVFATFLR 2458 (2622)
Q Consensus 2384 -~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~----~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~ 2458 (2622)
..+...+.++.+|.-...+.+..+|..|...+|.+|...|.-- +..++.++++...++. ..+.-+...+...+.
T Consensus 1217 ~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~-~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1217 QEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDI-KSKIQLLQNLELYLL 1295 (1692)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHHHH
Confidence 1235567788888878888889999999999999998776432 2233333332111111 001111111111110
Q ss_pred --------------------------hCCccccC----ChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCC
Q 000050 2459 --------------------------HNPSAISM----SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508 (2622)
Q Consensus 2459 --------------------------~~~~~i~~----~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~ 2508 (2622)
........ .......++.+.+.+-+.+..+|..|+..+.-++..+.
T Consensus 1296 eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGL---- 1371 (1692)
T KOG1020|consen 1296 EEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGL---- 1371 (1692)
T ss_pred HHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccC----
Confidence 00000001 12344455666777888899999999998886665543
Q ss_pred CCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHh
Q 000050 2509 ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 2556 (2622)
Q Consensus 2509 ~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~ 2556 (2622)
..+...++-++..-.|.....|..|...+.-+-++.+..|...+.
T Consensus 1372 ---VhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~ 1416 (1692)
T KOG1020|consen 1372 ---VHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLS 1416 (1692)
T ss_pred ---CCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 234567888888878889999999999999998888776654443
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.9e-06 Score=94.69 Aligned_cols=342 Identities=14% Similarity=0.089 Sum_probs=216.4
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChh-H
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-I 1535 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-i 1535 (2622)
....+++-.+.+.+.....++...+|.++-... +.+...+..+=+.+.+++.| +.+||..++.|+.+++..-.++. +
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhh
Confidence 345556666778888889999999998886433 33444556666667777777 77899999999999987644431 1
Q ss_pred --HhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCC-hhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCC
Q 000050 1536 --ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2622)
Q Consensus 1536 --~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~-~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 1611 (2622)
..-+..+.+.-+..+..++ .+...+...+....-. .-..+--+|++...+...+..+|..++..+++++---...+
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 1223334443333333443 5666655422111100 01123357888999999999999999999999874222223
Q ss_pred cccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 000050 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2622)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~ 1686 (2622)
.+..--|.++|.|..++.++++.++..|..+++.++... +|. ..-+|.+++.++++..+ .-.....|+-.+.
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnis 320 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNIS 320 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhcc
Confidence 455555779999999999999999999999999998632 232 23467888888766533 3333444454443
Q ss_pred HHhchhHH---HhHhHHHHHhccCC-ChhhHHHHHHHHHHhhhhhCcchhhhHH-hHHHHHHhhcCCCChHHHHHHHHHH
Q 000050 1687 AALGTVYF---EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAG 1761 (2622)
Q Consensus 1687 ~~~g~~~l---~~llp~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al 1761 (2622)
-.-+.+.+ ..++..++..+.-. +.+.+-.+...+..++.........+.+ ..+|.+...+-|..-.+|...-.++
T Consensus 321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~ 400 (550)
T KOG4224|consen 321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI 400 (550)
T ss_pred cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence 33233221 33455566666544 4557888888888888754433333332 3678888888888888887665555
Q ss_pred HHHHHHhh-hch-hh-hhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000050 1762 HVLVEHYA-TTS-LP-LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1762 ~~lv~~~~-~~~-i~-~llp~l~~~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
..+.-+-. ..+ .+ -++|.+.....+++..+|-.+...++.+.
T Consensus 401 a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 401 AQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 54432111 111 11 26677777778888888888777777763
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.016 Score=76.50 Aligned_cols=152 Identities=21% Similarity=0.206 Sum_probs=123.2
Q ss_pred hhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC---
Q 000050 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME--- 2423 (2622)
Q Consensus 2347 ~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~--- 2423 (2622)
+..++|.+++.+.+.+...|...+.+|..|+.+.+....-+..+.++++|.+.++-+|..+|.....++..+....+
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 44678888999887778899999999999999888766668889999999999999999999999999887765543
Q ss_pred chHHHHHHHHHHhhcCCCC---chhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHH
Q 000050 2424 DGQLADLLQELLNLASSPS---WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499 (2622)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~---~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~l 2499 (2622)
++++..+++.++....+++ ...|..+..+++++...-|...+ .++.+.++..|.+.+.|++.-+|+-|+.+-+..
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l-~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSL-LSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccc-ccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 3457778888877555555 34677777788888876776654 357899999999999999999999999987764
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.019 Score=75.74 Aligned_cols=704 Identities=13% Similarity=0.098 Sum_probs=344.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhc-CChHHHHHHHHHHHHHHHHhchhHH----------
Q 000050 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVYF---------- 1694 (2622)
Q Consensus 1626 ~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~-~~~~~r~~a~~~L~~i~~~~g~~~l---------- 1694 (2622)
....++++.+|..|-..+..+... +.+-..|.+...+. .+-..|+.++.-+-+.+...+....
T Consensus 11 ~~~ls~d~~vr~~AE~~l~qle~~------~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~ 84 (1005)
T KOG2274|consen 11 SGSLSADQNVRSQAETQLKQLELT------EGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVS 84 (1005)
T ss_pred HhhcCCChhHHHHHHHHHhccccc------hHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCccc
Confidence 344578899999998887765432 23444555555443 3456788887777777665443211
Q ss_pred ---H-hHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 000050 1695 ---E-HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2622)
Q Consensus 1695 ---~-~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~ 1770 (2622)
. -+...+...+-+++..+|.++..+...++..--+ .-.++++|.+++++++.+++--.+|++++..+....-.
T Consensus 85 e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P---d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 85 EEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP---DEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred HHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc---hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH
Confidence 1 1223444555577888999999888888875432 34688999999999987777667888888877665432
Q ss_pred chh----hhhHHHHhhcc---CCCchHHHHHHH--HHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhh
Q 000050 1771 TSL----PLLLPAVEDGI---FNDNWRIRQSSV--ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841 (2622)
Q Consensus 1771 ~~i----~~llp~l~~~l---~d~~~rvR~~a~--~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~ 1841 (2622)
+.. ...+|.+.... ...+.+.|..++ .++...+.-+... . +. .++..+.+....-..+
T Consensus 162 ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~---------~---e~-~~~~~~~~~s~~l~~~ 228 (1005)
T KOG2274|consen 162 EEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNV---------E---EV-WAEHVKVFLSQILNQF 228 (1005)
T ss_pred HHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHH---------H---HH-HHHHHHHHHHHHHHHH
Confidence 211 22333333221 222333444444 2222222111100 0 00 0011111111111001
Q ss_pred HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-HH--HHHh
Q 000050 1842 RNEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS-SSERRQVAGRALG-EL--VRKL 1916 (2622)
Q Consensus 1842 ~~~il~~L~~~~~D~-~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~-~~~~R~~A~~~L~-~l--v~~~ 1916 (2622)
. +++... ..++|. .+..|..-+.++..++.+.|....+++...++.....+... ..-+|.....+=. .- ...-
T Consensus 229 ~-~~l~h~-l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd 306 (1005)
T KOG2274|consen 229 M-DILEHP-LQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSD 306 (1005)
T ss_pred H-HHHhhh-hcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCc
Confidence 0 111111 123333 45678888888888888888766555555444333222100 0000000000000 00 0000
Q ss_pred ccc-----hhhhHHHHHhhhcC-----CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCc--HHHHHH
Q 000050 1917 GER-----VLPSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI--LEVRES 1984 (2622)
Q Consensus 1917 ~~~-----~l~~llp~L~~~L~-----d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d--~~VR~~ 1984 (2622)
|+. ..-+++..+...+. ..-........+.+. +....+.+++.-+... ......|.+ ..+|..
T Consensus 307 ~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v-~y~Qlseeqie~w~sD----~~~fV~dEd~~~~~~~~ 381 (1005)
T KOG2274|consen 307 PEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLV-AYLQLSEEQIEVWTSD----VNQFVADEDDGYTARIS 381 (1005)
T ss_pred hhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhhHHHHHHHhcc----HHHhhccCCCCchhhhh
Confidence 000 00011111110000 000000000000000 0000111111111111 011112222 234444
Q ss_pred HHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHh
Q 000050 1985 AGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2622)
Q Consensus 1985 A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~ 2064 (2622)
....+-.+...+|...+..+....-..++.............-. ++.....+..+.. .
T Consensus 382 ~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk--------------------~qea~l~a~~~~~--~ 439 (1005)
T KOG2274|consen 382 VRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWK--------------------IQEALLVAAESVR--I 439 (1005)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHH--------------------HHHHHHHHHhhcc--c
Confidence 44444444444554333333222111111000000000000000 0000000111111 2
Q ss_pred CCChhhhHhhhHHHHHHhcC-CCCHHHHHHHHHHHHHhhhc--cChhcHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHH
Q 000050 2065 GPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFY 2140 (2622)
Q Consensus 2065 g~~l~~~l~~il~~Ll~~l~-~~~~~vr~~a~~al~~l~~~--~~~~~l~~ll~~Ll~~l-~d~~~~vR~~A~~~L~~l~ 2140 (2622)
+.....++..++..+...+. .+.+.+-..+.+++..+..+ +...-...++...+..+ .+..+.+|..|+.++..+|
T Consensus 440 ~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~ 519 (1005)
T KOG2274|consen 440 DDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC 519 (1005)
T ss_pred CcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc
Confidence 33344555555555556553 34455555777787777665 33444566666665555 4666889999999998888
Q ss_pred hhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccc--hhhHHHHHHHHHhhchhhhhhhhcCCcccc
Q 000050 2141 KNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV--QPSYIKVIRDAISTSRDKERRKKKGGPILI 2218 (2622)
Q Consensus 2141 ~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~--l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l 2218 (2622)
.+.-+.+..|.++..|+.+..+...+|.....++|+.+++..++.. +.
T Consensus 520 --~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~---------------------------- 569 (1005)
T KOG2274|consen 520 --KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASME---------------------------- 569 (1005)
T ss_pred --CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhh----------------------------
Confidence 3456778889999999999999999999999999999887655321 11
Q ss_pred ccCCCCcCchhhHHHHHHHHc--cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC---CCHhhHHHHH
Q 000050 2219 PGFCLPKALQPLLPIFLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSAIL 2293 (2622)
Q Consensus 2219 ~g~~~~~~l~~ilp~ll~~L~--~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~---~~~~vk~~al 2293 (2622)
+.+.|.+...+. +.++-+-..+-.++.+++... ....|+....++.++.+++-. .+......++
T Consensus 570 ---------skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~--~~~g~m~e~~iPslisil~~~~~~~~~~l~~~ai 638 (1005)
T KOG2274|consen 570 ---------SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA--ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAI 638 (1005)
T ss_pred ---------cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHcCcccccCchhhHHHH
Confidence 112333322221 123444445556666666532 456777777888888888643 2356777899
Q ss_pred HHHHHHHHhcCCCccC-chHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhc----------ccChh-hHHHHHHHhhhc
Q 000050 2294 STLSIIIRKGGIALKP-FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL----------STRVD-PLVGDLLSSLQV 2360 (2622)
Q Consensus 2294 ~~L~~L~~~~~~~l~p-~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~----------~~~~~-~ll~~Ll~~l~~ 2360 (2622)
..|..+++..+..+.. +..+..+.+.++.-++ +-.+=..+-.||..++.. .|+.. .++-..+..+-+
T Consensus 639 dvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 639 DVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD 718 (1005)
T ss_pred HHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC
Confidence 9999999988765433 3345677888876554 566777888999888542 12222 244444445433
Q ss_pred CC--HhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhc
Q 000050 2361 SD--AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCM 2422 (2622)
Q Consensus 2361 ~d--~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~Lg~L~~~~ 2422 (2622)
++ ......+-.-+..++.++|..++ +..++|+..+..-+. .....+-..-...+.+|....
T Consensus 719 p~~sds~a~~VG~lV~tLit~a~~el~-~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~ 782 (1005)
T KOG2274|consen 719 PETSDSAAAFVGPLVLTLITHASSELG-PNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTD 782 (1005)
T ss_pred CccchhHHHHHhHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCC
Confidence 32 22222344445566777777664 344555544433332 234444444444555555433
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=106.44 Aligned_cols=295 Identities=18% Similarity=0.204 Sum_probs=204.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2622)
+++.+..+++.-+..+.|.+|+..+..++....+ +..+..++|.++.++.|+...||-.|..++-.+.....+.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~---- 496 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI---- 496 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC----
Confidence 5566666666655667788899988888876653 5567889999999999999999999988876664432211
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
.|....-.-.-++|.|-.++.| ....||-+-+.+|..+++..- .+..
T Consensus 497 ------------------------------~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 497 ------------------------------PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred ------------------------------CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 0111111123467888888999 677899999999999987542 1222
Q ss_pred HHHHHHhh--cCCCChhHH------HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCC
Q 000050 1538 LVPTLLMG--LTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2622)
Q Consensus 1538 ilp~Ll~~--l~d~~~~~r------~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 1609 (2622)
+...+-.. +++|+..+. .-+++| ...+-..+...+.|.++-||+...+.+..+|..++.
T Consensus 545 ~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh
Confidence 22222222 455544211 011111 122333445567788889999999999999988876
Q ss_pred CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 000050 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1610 ~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~-~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~ 1688 (2622)
.+. -+-+++.|...|+|.+|.+|.+-+..|.-++-.+|... -+-++|.|.+.|.+.++. +...+..++..+++.
T Consensus 612 ~ks----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~-Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 612 EKS----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA-VIVSALGSLSILIKL 686 (1431)
T ss_pred ccc----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh-hHHHHHHHHHHHHHh
Confidence 432 23488889999999999999999998888888788763 345678888888766544 566777788777763
Q ss_pred h--chhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc
Q 000050 1689 L--GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2622)
Q Consensus 1689 ~--g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 1729 (2622)
- .+..+-+++..+.-.+.+++.-+|.+++..+..++..++.
T Consensus 687 ~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 687 GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 2 2234466666777778899999999999999999888774
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.023 Score=75.21 Aligned_cols=193 Identities=22% Similarity=0.254 Sum_probs=141.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc-------------ccccHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000050 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-------------LVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2622)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~-------------l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL 2177 (2622)
.++-..++..+++ +.+--.++.++..+....+.. -..++.++++.+...+......++.+-..+|
T Consensus 814 ~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 814 SEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEAL 891 (1030)
T ss_pred chHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHH
Confidence 3455556666655 233344555555443322111 0234567777887777756666777777888
Q ss_pred HHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 000050 2178 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 2257 (2622)
Q Consensus 2178 ~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~ 2257 (2622)
+.++++.|++.+ + +.+..++|.++++|.-++.++|-....++..+.
T Consensus 892 shVl~~vP~~vl----------------------------l------p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 892 SHVLTNVPKQVL----------------------------L------PQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHHhcCCHHhh----------------------------c------cchhhHHHHHHHhcCCCccchhhhHhhhhhHHH
Confidence 888777665321 1 234568999999999999999999999999999
Q ss_pred hhcChhhhhhhhhhhhHHHHHhhcCCC--CHhhHHHHHHHHHHHHHhcC-CCccCchHHHHHHHHHHhCCCCHHHHHHHH
Q 000050 2258 EVTSEQSLKEFVIPITGPLIRIIGDRF--PWQVKSAILSTLSIIIRKGG-IALKPFLPQLQTTFIKCLQDSTRTVRSSAA 2334 (2622)
Q Consensus 2258 ~~~~~~~l~p~v~~i~~~Li~~l~~~~--~~~vk~~al~~L~~L~~~~~-~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa 2334 (2622)
...+ .-...|++.+++.++.+-.+.. ...||..|+.+|+.|.+..| ..+.||-|++++.+.++|.|+.+-||..|+
T Consensus 938 ~~~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 938 TESE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred Hhcc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 8776 6678889999888887765543 25799999999999999665 467899999999999999999999999999
Q ss_pred HHHHHH
Q 000050 2335 LALGKL 2340 (2622)
Q Consensus 2335 ~aLg~L 2340 (2622)
.+=+..
T Consensus 1017 ~tR~~W 1022 (1030)
T KOG1967|consen 1017 DTRQNW 1022 (1030)
T ss_pred HHhhhh
Confidence 887765
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0019 Score=79.61 Aligned_cols=288 Identities=14% Similarity=0.047 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2622)
Q Consensus 1841 ~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~ 1919 (2622)
.+....+.|-..++|.-..|.-.+...+.++.... +. +.+...+..+-.+|.++....|..|.+.|.++....+..
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~---~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGS---QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce
Confidence 34444444545567766777777777777776533 22 456667777788888999999999999999999876654
Q ss_pred hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1920 ~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
+. ..-+-+...+.|.+ |.-+.+++..+++....+.+ +.++..+...+.|-....+..+..++.++.-.+..
T Consensus 338 v~-vcN~evEsLIsd~N---r~IstyAITtLLKTGt~e~i----drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~- 408 (898)
T COG5240 338 VS-VCNKEVESLISDEN---RTISTYAITTLLKTGTEETI----DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS- 408 (898)
T ss_pred ee-ecChhHHHHhhccc---ccchHHHHHHHHHcCchhhH----HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-
Confidence 21 11222334444444 44456777777765444443 34444444444444444455556666666544433
Q ss_pred hhhhhHHHHHHhcccCCc---hhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhH
Q 000050 2000 AIDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076 (2622)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~~~---~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il 2076 (2622)
....++..|.+.|.++.. ...+.+++..++.. ......+||..|.
T Consensus 409 k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~-----------------~p~skEraLe~LC--------------- 456 (898)
T COG5240 409 KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN-----------------DPDSKERALEVLC--------------- 456 (898)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh-----------------CchHHHHHHHHHH---------------
Confidence 345566777776655432 13455555555421 0011233333333
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHhhhccCh-hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHH
Q 000050 2077 PALLSAMGDDD-MDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2622)
Q Consensus 2077 ~~Ll~~l~~~~-~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~i 2154 (2622)
..+.|.. +++ +...++.+....+. ..-...+..+..++-=++..+|.+|..+|..|+-+....+.+ ..+
T Consensus 457 ----~fIEDcey~~I---~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv 527 (898)
T COG5240 457 ----TFIEDCEYHQI---TVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSV 527 (898)
T ss_pred ----HHHhhcchhHH---HHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHH
Confidence 3333322 222 23333333332211 111223333444444467899999999999997654433333 456
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000050 2155 ISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2622)
Q Consensus 2155 l~~L~~~l~d~d~~V~~~a~~aL~~l~ 2181 (2622)
...|-++++|.|.+||+.|..++..+-
T Consensus 528 ~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 528 ENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 667778899999999999998888764
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0013 Score=79.65 Aligned_cols=514 Identities=14% Similarity=0.112 Sum_probs=263.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhch----hhhhHHH---------HhhccCCCchHHHHHHHHHHHHHHHHhcCCccccccc
Q 000050 1750 NESVRDAALGAGHVLVEHYATTS----LPLLLPA---------VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2622)
Q Consensus 1750 ~~~VR~~al~al~~lv~~~~~~~----i~~llp~---------l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~ 1816 (2622)
...||..|+.++....+.++.+. ...++|. +.-++.|.+.|.|.-+++....+++.. |..+.
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-----k~fls 83 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-----KQFLS 83 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-----HHHHH
Confidence 34688889888888777665442 2223332 234578999999999999999988631 11100
Q ss_pred CCC--CCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhh-HH-HHHHHHHHHHHH
Q 000050 1817 GGS--DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-LK-EIMPVLMNTLIS 1892 (2622)
Q Consensus 1817 ~~~--dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~-l~-~~l~~ll~~L~~ 1892 (2622)
..+ .|..+..-. -.+...+- ...+++-.. .-.+....+-...++++..++.++|-. ++ .++-.++..+.+
T Consensus 84 ~a~~~~~~~ftpf~--v~~a~si~--~~~r~l~~~--l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~ 157 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFS--VMIACSIR--ELHRCLLLA--LVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKP 157 (728)
T ss_pred HHhccCCcCCCchH--HHHHHHHH--HHHHHHHHH--HHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 000 011111000 01110000 001111111 123445667788899999999998833 22 356677788888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhcc----------c------hhh-----hHHHHH------h----------------
Q 000050 1893 SLASSSSERRQVAGRALGELVRKLGE----------R------VLP-----SIIPIL------S---------------- 1929 (2622)
Q Consensus 1893 ~L~s~~~~~R~~A~~~L~~lv~~~~~----------~------~l~-----~llp~L------~---------------- 1929 (2622)
.+.+.++.+|..+...++.++..... . .++ +-...+ .
T Consensus 158 ~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~ 237 (728)
T KOG4535|consen 158 YIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWL 237 (728)
T ss_pred HhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcce
Confidence 88999999999999999988753210 0 000 000000 0
Q ss_pred ----------------------hhcCC--CChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHH
Q 000050 1930 ----------------------RGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985 (2622)
Q Consensus 1930 ----------------------~~L~d--~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A 1985 (2622)
.++.. .-..+|..+.+.|..+....+ ....|..++...+...+.+.++.+...+
T Consensus 238 i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~~p~~~l~~ 315 (728)
T KOG4535|consen 238 IRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEADPSIQLHG 315 (728)
T ss_pred eeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCCChHHHHHH
Confidence 00000 011345555555554433332 2344667777777788889999999999
Q ss_pred HHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhC
Q 000050 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 2065 (2622)
Q Consensus 1986 ~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g 2065 (2622)
+.++..+....+.+ ..| +...+..--..+..++..+ -.+.....-..+........++.++....-
T Consensus 316 a~ll~~lg~~lv~~----~~P-------~~~k~~~q~~~fw~~~l~~---p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 316 AKLLEELGTGLIQQ----YKP-------DSTKAPDQRAPFWTMMLNG---PLPRALYDSEHPTLQASACDALSSILPEAF 381 (728)
T ss_pred HHHHHHHHHHHhhh----cCC-------CcccchhhhccHHHHHccC---CChhhhhhhcCCCchhHHHHHHhhcCchhh
Confidence 99988876544421 111 0000000000122222110 011111000001111122334444433222
Q ss_pred CChhhhHhhhHHHHHHhcCCC-CHHHHHHHHHHHHHhhhccCh----hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 000050 2066 PGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFY 2140 (2622)
Q Consensus 2066 ~~l~~~l~~il~~Ll~~l~~~-~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~ 2140 (2622)
..|..--.+..+.+.....|. +.-++.++..++...+..-+- ..+......++..+.|..-.+|..+++.+|.+.
T Consensus 382 ~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnIT 461 (728)
T KOG4535|consen 382 SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNIT 461 (728)
T ss_pred cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhH
Confidence 223332335566666666543 344666776666554443221 224455566666677777889999999999885
Q ss_pred hhc----cc---cccccHHHHHHHHHHHhc--C-CChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhh
Q 000050 2141 KNS----KL---YLVDEAPNMISTLIVLLS--D-SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210 (2622)
Q Consensus 2141 ~~~----~~---~l~~~~~~il~~L~~~l~--d-~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~ 2210 (2622)
... +. .-.......+..++..-. + ....|+.++.++|+++...... +.+.....+ .+...
T Consensus 462 dAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~-----i~~~~~~e~---~~~~~-- 531 (728)
T KOG4535|consen 462 DALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP-----IEKPTFAEI---IEESI-- 531 (728)
T ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH-----hhhccHHHH---HHHHH--
Confidence 432 21 112233444555544432 2 2357999999999998654321 111100000 00000
Q ss_pred hcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCh-hhhhhhhhhhhHHHHHhhcCCCCHhhH
Q 000050 2211 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2622)
Q Consensus 2211 ~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~-~~l~p~v~~i~~~Li~~l~~~~~~~vk 2289 (2622)
.+++. .....+...+|-+++.++|.+.++-.- -.-.++.+.+++.|...+.+..+..||
T Consensus 532 ~~l~~--------------------~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR 591 (728)
T KOG4535|consen 532 QALIS--------------------TVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR 591 (728)
T ss_pred Hhccc--------------------ceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence 00000 001123457899999999999976320 112466677777777777776677788
Q ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHh
Q 000050 2290 SAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322 (2622)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L 2322 (2622)
..|..+|..-.... .....++-.++.++..|
T Consensus 592 i~AA~aL~vp~~re--~~~d~~~Lsw~~lv~aL 622 (728)
T KOG4535|consen 592 IRAAAALSVPGKRE--QYGDQYALSWNALVTAL 622 (728)
T ss_pred ehhhhhhcCCCCcc--cchhHHhHHHHHHHHHH
Confidence 77777776443322 22333444455444443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=86.49 Aligned_cols=93 Identities=26% Similarity=0.364 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhh
Q 000050 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1395 ~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
.|.+++.++..++.++|..+.+|+..++|.++.++.|++..||..|++++-.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni--------------------------- 54 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNI--------------------------- 54 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH---------------------------
Confidence 68899999999999999889999999999999999999888887766555544
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000050 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2622)
+......+..+++++++.+.+++.|+++.||.+|. .|.++
T Consensus 55 -----------~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 55 -----------SKVARGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 44344455567899999999999999999998884 44444
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0088 Score=76.75 Aligned_cols=256 Identities=19% Similarity=0.292 Sum_probs=135.7
Q ss_pred hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhh----------hhhhhhHHHHh--hhhcCCCHHHHHHHHHH
Q 000050 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----------QCLPKIVPKLT--EVLTDTHPKVQSAGQTA 1522 (2622)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~----------~~L~~ivp~L~--~~L~D~~~~VR~aA~~a 1522 (2622)
.+...+...++.-.+.+|..-..|+..+..++++.+.... ..+..+++.+. +++.++|+.|+-.-.+.
T Consensus 437 ~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ 516 (980)
T KOG2021|consen 437 NIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMEL 516 (980)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHH
Confidence 3455555555556678899999999999999987543211 12223444333 35567788877666666
Q ss_pred HHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 000050 1523 LQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2622)
Q Consensus 1523 L~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~ 1602 (2622)
+.+..+.+.. -...+|.++.+.-|+ +|+...+.+||..|.-....
T Consensus 517 ivRY~kff~~--esq~ip~vL~aFld~---------------------------------rglhn~ne~Vr~RawYLF~R 561 (980)
T KOG2021|consen 517 IVRYNKFFST--ESQKIPLVLNAFLDS---------------------------------RGLHNKNENVRLRAWYLFTR 561 (980)
T ss_pred HHHHHHHHhc--chhhhHHHHHHHccc---------------------------------hhccccccccchHHHHHHHH
Confidence 6554443321 112344444433322 34455566677777666666
Q ss_pred hhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHH------------HHHHHHHHHHHhhhC--CC----CchhhH-----
Q 000050 1603 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR------------SVAARAIGSLIRGMG--EE----NFPDLV----- 1659 (2622)
Q Consensus 1603 l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR------------~~a~~aL~~L~~~~g--~~----~~~~ll----- 1659 (2622)
+.+.+. +.+.||.+.++..+..+|..+.+..- --..+++|-++..-. .+ +...++
T Consensus 562 fVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~ 639 (980)
T KOG2021|consen 562 FVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLIL 639 (980)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHH
Confidence 665542 35666777777777666632222111 111222222221100 00 111111
Q ss_pred ----HHHHHHhhhcCCh----HHHHHHHHHHHHHHHHhch-----------hHHHhHhHHHHHhcc--CCChhhHHHHHH
Q 000050 1660 ----SWLLDALKSDNSN----VERSGAAQGLSEVLAALGT-----------VYFEHILPDIIRNCS--HQRASVRDGYLT 1718 (2622)
Q Consensus 1660 ----~~Ll~~L~~~~~~----~~r~~a~~~L~~i~~~~g~-----------~~l~~llp~l~~~l~--~~~~~vR~~al~ 1718 (2622)
..+...+.++... ..-...+.+++...+++.. ..+...+..++..+. .....+|.+.-.
T Consensus 640 ~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrf 719 (980)
T KOG2021|consen 640 DQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRF 719 (980)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 1111222222221 2334556666666655421 134444444433333 245667777778
Q ss_pred HHHHhhhhhCcchhhhHHhHHHHHHhhcC
Q 000050 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2622)
.++++..++|+..-||+++.+..+++...
T Consensus 720 t~hRmI~~lg~~vlPfipklie~lL~s~d 748 (980)
T KOG2021|consen 720 TFHRMIPILGNKVLPFIPKLIELLLSSTD 748 (980)
T ss_pred HHHHHHHhcchhhhcchHHHHHHHHhcCC
Confidence 88888888888888888888888887654
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.053 Score=81.41 Aligned_cols=267 Identities=21% Similarity=0.298 Sum_probs=163.0
Q ss_pred ChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh---------hcHHHHHHHHHhh-cCCCChhHHHHHHHHH
Q 000050 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELLKG-VGDNQASIRRSSAYLI 2136 (2622)
Q Consensus 2067 ~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~---------~~l~~ll~~Ll~~-l~d~~~~vR~~A~~~L 2136 (2622)
+...++..+++.. +...+.++|..+..++..++..... +.+..++..+... +.+.++.+|......+
T Consensus 477 ~~~~~~~~~~~~~---~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l 553 (2341)
T KOG0891|consen 477 SLTLFVQQCVDSY---LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSL 553 (2341)
T ss_pred hHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhh
Confidence 3344444444333 3456677887776655555443211 1134444444443 3567788887766665
Q ss_pred HHHHhhcccccccc--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhh-hhhhcC
Q 000050 2137 GYFYKNSKLYLVDE--APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE-RRKKKG 2213 (2622)
Q Consensus 2137 ~~l~~~~~~~l~~~--~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~-~~~~~~ 2213 (2622)
. .++.++ -+..+..++..+.|..-..+.++...+++++...++..++.+............-.. .+....
T Consensus 554 ~-------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~ 626 (2341)
T KOG0891|consen 554 N-------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEE 626 (2341)
T ss_pred c-------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHH
Confidence 5 111111 256777788888888888899988888888776665555555544433322221100 000000
Q ss_pred Cc----ccc---ccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCH
Q 000050 2214 GP----ILI---PGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2622)
Q Consensus 2214 ~~----~~l---~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~ 2286 (2622)
.. ..+ +.+. -.++.+++-.+...+.+++..+-..+..+++.++...| ..++.++.....-+...+++....
T Consensus 627 ~a~~~~~~i~~~~~~i-~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-~~~~~~~~~~~~~~~~~l~~~s~~ 704 (2341)
T KOG0891|consen 627 SAKLLCELIISSPVLI-SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-EEMVKWVDELFSLIIKMLQDQSSL 704 (2341)
T ss_pred HHHHhhHHHHHHHHHH-HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-chhhhccchHHHHHHHHHHHhhhh
Confidence 00 000 0000 01223344444445555666666788899999998888 667777766666667777776677
Q ss_pred hhHHHHHHHHHHHHHhcCCCccCch--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhccc
Q 000050 2287 QVKSAILSTLSIIIRKGGIALKPFL--PQLQTTFIKCLQDS-TRTVRSSAALALGKLSALST 2345 (2622)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~l--~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~ 2345 (2622)
..|.+++.+++.+....+..+.|+. |.+...+..-+... ...+|..+...+|.+...++
T Consensus 705 ~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 705 GKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred hchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 7899999999999998888788875 77888887776665 78999999999996655443
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00063 Score=89.11 Aligned_cols=225 Identities=16% Similarity=0.208 Sum_probs=165.9
Q ss_pred hHhhhHHHHHHhc-CCCCHHHHHHHHHHHHHhhhccCh-hcHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHhhccccc
Q 000050 2071 HLGTILPALLSAM-GDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2622)
Q Consensus 2071 ~l~~il~~Ll~~l-~~~~~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l-~d~~~~vR~~A~~~L~~l~~~~~~~l 2147 (2622)
....++..++... ..+++..|..+..++..++..+.. +.+..++..+.... ...+...|..+...+.-+.+..-...
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 5555777777765 455588899999999988887643 45778888777777 45566777777777766665433334
Q ss_pred cccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2148 ~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
.+...+++..|+.++++ +++...+..+++.++...+. .+. .... ..+.-+...+-.
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~-~l~-----------~~~~----------a~vklLykQR~F 321 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDD-VLN-----------KENH----------ANVKLLYKQRFF 321 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH-hcC-----------cccc----------chhhhHHhHHHH
Confidence 56677889999999987 56777888888887764221 110 0000 001111112445
Q ss_pred hhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCc
Q 000050 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2622)
..++|.++++....+.+.|.....+++.+.++++.+.+.++++.+.+-|++.|.-. +.+++.+++.+|..++...+..+
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHH
Confidence 66899999999988888999999999999999998899999999999999999654 77899999999999999888778
Q ss_pred cCchHHHHHHHHH
Q 000050 2308 KPFLPQLQTTFIK 2320 (2622)
Q Consensus 2308 ~p~l~~L~~~llk 2320 (2622)
.+|+..|++.+++
T Consensus 401 ~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 401 SEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 8888877777665
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-05 Score=107.20 Aligned_cols=339 Identities=17% Similarity=0.216 Sum_probs=217.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC--chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhH
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~--~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~l 1697 (2622)
.+..+...+.-..+..-..++.++-.++...|... ...+++ .+..+. +..+|..+...+.++.+..|......+
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~-~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~ 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIK-HVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccc-cCcccc---ccccchhhcccchhhhhhcCCCcCccc
Confidence 34455555555666666778888888888777541 122221 112222 234677777777777776665421111
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCC-hHHHH--HHHHHHHHH--------HH
Q 000050 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-ESVRD--AALGAGHVL--------VE 1766 (2622)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~-~~VR~--~al~al~~l--------v~ 1766 (2622)
.+......++.+..+.|.....+...--+.......++. +++.+ .....+... ..
T Consensus 175 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d 240 (815)
T KOG1820|consen 175 --------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPID 240 (815)
T ss_pred --------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCcc
Confidence 133334444444444443222221111122222222111 11000 000000000 00
Q ss_pred ---Hh-hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhH
Q 000050 1767 ---HY-ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2622)
Q Consensus 1767 ---~~-~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~ 1842 (2622)
.. ..+..+.+-|.+...+.+++|+-|..+++.+...+..-. . +-... +.
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~---------~~~~~-----------------~~ 293 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-K---------EIVKG-----------------YT 293 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-c---------ccccC-----------------cc
Confidence 00 112345577888899999999999999998888775421 0 00000 11
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhh
Q 000050 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922 (2622)
Q Consensus 1843 ~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~ 1922 (2622)
+.+...+-....|.|..|-..|+.++..++...+..+.+|....++.++.++.+.....|.....++..++.. ..+.
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~l~ 370 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TPLS 370 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---ccHH
Confidence 1122223334689999999999999999999999889999999999999999999999999999999888763 3467
Q ss_pred hHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChh-hHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000050 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2622)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~-~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~ 2001 (2622)
.+.+.+..++.+.+|..|..+..++...+...++. ....-+.+++|.+..+.+|.+.+||.+|..+++.+++.+|...+
T Consensus 371 ~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 371 KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 78888889999999999999999999888877742 23445688999999999999999999999999999999998666
Q ss_pred hhhHH
Q 000050 2002 DEIVP 2006 (2622)
Q Consensus 2002 ~~ilp 2006 (2622)
..++.
T Consensus 451 ~k~L~ 455 (815)
T KOG1820|consen 451 KKLLK 455 (815)
T ss_pred HHHHH
Confidence 55543
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.041 Score=72.20 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=98.7
Q ss_pred CCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH-hcccChhhHHHHHHHhhhc
Q 000050 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQV 2360 (2622)
Q Consensus 2283 ~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~-~~~~~~~~ll~~Ll~~l~~ 2360 (2622)
.+++-+|..+.-+|+.++-.-+.-.+. +++.|++-|.-. .-.+|+...-++|.++ .+...+|.|+|.+-..+++
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~LaKr----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRLAKR----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC
Confidence 357778999999999988765544443 455666666654 6789999999999994 4556789999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000050 2361 SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2622)
Q Consensus 2361 ~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2622)
+++-||...+--|..+++..= -.+...++=-..-.+-|.++++|+-+--|+|.+...-.+
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~----vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGI----VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhh----hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 999999999988988886421 122333332222334478899999999999998766443
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0012 Score=79.88 Aligned_cols=511 Identities=16% Similarity=0.174 Sum_probs=274.7
Q ss_pred CHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHH---------HHHHHhcCCCHHHHHHHHHHHHHHHHHh----------
Q 000050 1857 SLSVRQAALHVWKTIVANTPK-TLKEIMPVLMN---------TLISSLASSSSERRQVAGRALGELVRKL---------- 1916 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~-~l~~~l~~ll~---------~L~~~L~s~~~~~R~~A~~~L~~lv~~~---------- 1916 (2622)
...||..|+.++..+....|+ .+.-|+..++| .+.-.++|+++..|..|.+.+..+....
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 357899999988888776653 33344444433 1222367899999999999999887543
Q ss_pred ccc-hhh----------hHHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhHH-HhHHhHHHHHHHHhcCCcHHHHH
Q 000050 1917 GER-VLP----------SIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLL-SFMDELIPTIRTALCDSILEVRE 1983 (2622)
Q Consensus 1917 ~~~-~l~----------~llp~L~~~L~-d~~~~vR~~a~~~L~~li~~~~~~~l~-~~l~~ll~~l~~~L~d~d~~VR~ 1983 (2622)
|+. +.| ++...+...+. +..+.+-..++.+|+.++...+-..++ .++-.++..+.+.+...|+.||-
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 221 112 11222222232 345666667788888887766555443 46677888888899999999999
Q ss_pred HHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCc-------hhHHHHHHHHHHhhh--------ccc-------cccchh
Q 000050 1984 SAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT-------SDTALDGLKQILSVR--------TTA-------VLPHIL 2041 (2622)
Q Consensus 1984 ~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~-------~~~aL~~L~~il~~~--------~~~-------ilp~Li 2041 (2622)
.+...++.+..... ..|.+-..+..... -...-+..++++... ++. ++...+
T Consensus 169 s~l~~~~~~v~t~~------~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~ 242 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHA------PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCI 242 (728)
T ss_pred HHHHHHHHHHhcCC------CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeee
Confidence 98888887754322 12222222211100 001112222222110 000 000000
Q ss_pred hhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh--hcHHHHHHHHHh
Q 000050 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESLVSELLK 2119 (2622)
Q Consensus 2042 p~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~--~~l~~ll~~Ll~ 2119 (2622)
.....++-..+ .+.....++|. +. ....+|-.+...+..+...++- .++-.+...+..
T Consensus 243 ~i~~~~~~~s~---~~~~~~~~~~~----------------~~-~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~ 302 (728)
T KOG4535|consen 243 SIVVLPKEDSC---SGSDAGSAAGS----------------TY-EPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICK 302 (728)
T ss_pred eeeecCCcccc---chhhHHhhhcC----------------cc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00000110000 00111111111 11 1123566666666666555542 345667777888
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccch----hhHHHH
Q 000050 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ----PSYIKV 2195 (2622)
Q Consensus 2120 ~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l----~~lv~~ 2195 (2622)
.+.+.++.+...+..++..+.......+.|. ....++..+.+.+..-. +..+...+ +.+...
T Consensus 303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~-------------~~k~~~q~~~fw~~~l~-~p~~~~~YDs~~~Tl~~s 368 (728)
T KOG4535|consen 303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPD-------------STKAPDQRAPFWTMMLN-GPLPRALYDSEHPTLQAS 368 (728)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHhhhcCCC-------------cccchhhhccHHHHHcc-CCChhhhhhhcCCCchhH
Confidence 8888888888888888877765433222211 11122222222111110 11111111 111111
Q ss_pred HHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhH
Q 000050 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITG 2274 (2622)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~ 2274 (2622)
....+... + ..+-..+|.+-....++|+.|..+. +.-+|..|..+++.++-+-+......++..-..
T Consensus 369 ~Cdals~i---------~---~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~ 436 (728)
T KOG4535|consen 369 ACDALSSI---------L---PEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAAN 436 (728)
T ss_pred HHHHHhhc---------C---chhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHH
Confidence 12222111 1 1233345667777889998888743 334667777888877766554445556655556
Q ss_pred HHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCc---cCchH----HHHHHHHHH--hCCC-CHHHHHHHHHHHHHHHhc-
Q 000050 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL---KPFLP----QLQTTFIKC--LQDS-TRTVRSSAALALGKLSAL- 2343 (2622)
Q Consensus 2275 ~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l---~p~l~----~L~~~llk~--L~d~-~~~vR~~Aa~aLg~L~~~- 2343 (2622)
...+.+++. .-.+|.-+..++|.|-...-..+ +.+.. .++...+.. ..+. +..||.+|..+||++..+
T Consensus 437 ~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 437 AILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 666777764 55678888888887765432211 11222 222222221 2333 679999999999998543
Q ss_pred ccChhhHHHHHHHhhhc---------CCHhHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHhhcC-CCHHHHHHHH
Q 000050 2344 STRVDPLVGDLLSSLQV---------SDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKDLVYH-DDDHVRVSAA 2412 (2622)
Q Consensus 2344 ~~~~~~ll~~Ll~~l~~---------~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~~l~~-~~~~vr~~aa 2412 (2622)
++-...-+.++++.-.. ....||-.++.++.+++.+-.-.+ +.+..+.+++.|..++.+ .+-.+|..||
T Consensus 516 q~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA 595 (728)
T KOG4535|consen 516 QPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAA 595 (728)
T ss_pred HHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhh
Confidence 33333333344433211 136799999999999997644322 235677888888877765 5778999988
Q ss_pred HHHHHHHh
Q 000050 2413 SILGIMSQ 2420 (2622)
Q Consensus 2413 ~~Lg~L~~ 2420 (2622)
.+|..-..
T Consensus 596 ~aL~vp~~ 603 (728)
T KOG4535|consen 596 AALSVPGK 603 (728)
T ss_pred hhhcCCCC
Confidence 87765444
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.011 Score=73.39 Aligned_cols=291 Identities=15% Similarity=0.162 Sum_probs=168.2
Q ss_pred hhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000050 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2622)
Q Consensus 1572 ~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g 1651 (2622)
..+.++.|.|...+.++-.-+...++..+..++..- .-..++++.+..|...|..+....|-.|.+.|..++-..+
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n----v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN----VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 455678899999998876677777777776665431 1123677888899999999999999999999999988765
Q ss_pred CCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcch
Q 000050 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2622)
Q Consensus 1652 ~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 1731 (2622)
+.. .-.-+.+ +.|-++. .|.-+..++..+++.-..+..+.++..+.....+-++..+..++.++..++..++..-
T Consensus 336 ~kv-~vcN~ev-EsLIsd~---Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 336 QKV-SVCNKEV-ESLISDE---NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred cee-eecChhH-HHHhhcc---cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence 441 1111111 2222332 3555666777777765556666666666666666666667777777888887777655
Q ss_pred hhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000050 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2622)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~ 1811 (2622)
..|+.-+...+++ ...-+.+..+.+++..+++..++. |.-+++.+.+++
T Consensus 411 ~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~s--------------------kEraLe~LC~fI-------- 459 (898)
T COG5240 411 LSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPDS--------------------KERALEVLCTFI-------- 459 (898)
T ss_pred HHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCchH--------------------HHHHHHHHHHHH--------
Confidence 5554444443333 222234555555555555443221 112222222222
Q ss_pred cccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHH
Q 000050 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNT 1889 (2622)
Q Consensus 1812 ~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l--~~~l~~ll~~ 1889 (2622)
.|. +--+.++.+|+-+....|+.- ..|+..+...
T Consensus 460 ------------------------------------------EDc--ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR 495 (898)
T COG5240 460 ------------------------------------------EDC--EYHQITVRILGILGREGPRAKTPGKYVRHIYNR 495 (898)
T ss_pred ------------------------------------------hhc--chhHHHHHHHHHhcccCCCCCCcchHHHHHHHH
Confidence 111 011223333333333333211 1223333222
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhccchhh-hHHHHHhhhcCCCChhhHHhHHHHHHHH
Q 000050 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLP-SIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2622)
Q Consensus 1890 L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~-~llp~L~~~L~d~~~~vR~~a~~~L~~l 1950 (2622)
+ -=.+..+|..|..||..+.-...+.+.+ .+...+.++++|.|.++|-.|...+..+
T Consensus 496 ~----iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 496 L----ILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred H----HHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 2 2235668888888888776555555443 4555677788888888988887776654
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0016 Score=84.95 Aligned_cols=430 Identities=17% Similarity=0.166 Sum_probs=247.6
Q ss_pred HHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
+..+..++|.++...+..+-..|+-.-.-+...+..-|..-. ..++.+++-..|+++.+|..|.+.++.+.-.
T Consensus 44 G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--- 116 (734)
T KOG1061|consen 44 GKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI----LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--- 116 (734)
T ss_pred CcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----hhhhhhhccCCCCCHHHHHHHhhceeeEeeh---
Confidence 346677888888888777777777666666666666555432 2344555667788888888888777655310
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc
Q 000050 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2622)
Q Consensus 1533 ~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2622)
. ....+...+.++++|.++.+|+.+..++..+... +++.
T Consensus 117 ~---------------------------------------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~ 155 (734)
T KOG1061|consen 117 K---------------------------------------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDL 155 (734)
T ss_pred H---------------------------------------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhh
Confidence 0 1112334456677777788888888877776553 1111
Q ss_pred ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 000050 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~ 1688 (2622)
. .-..+++.|..++.|.+|.|-..|..++..+.+.-... ....++..++..+..-..+ -+.. .+......
T Consensus 156 ~--~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW-~qi~---IL~~l~~y 229 (734)
T KOG1061|consen 156 V--EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW-GQIF---ILDCLAEY 229 (734)
T ss_pred c--cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh-hHHH---HHHHHHhc
Confidence 1 12347888888889999999999999999888765432 2234444555555433322 1222 23333333
Q ss_pred hchhH--HHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000050 1689 LGTVY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2622)
Q Consensus 1689 ~g~~~--l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~ 1766 (2622)
...+. ...++..+...+.+.++.+--++...+-.+...+..--..++.++-|+++..+..+. .+.-.+++-+..++.
T Consensus 230 ~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 230 VPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQ 308 (734)
T ss_pred CCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHH
Confidence 33332 244555555566666766666666666666655544223455667777777776655 666666666666555
Q ss_pred HhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHH
Q 000050 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2622)
Q Consensus 1767 ~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il 1846 (2622)
..+.- ...-+..+.-.-.|.. -++..=++ .+......+..++++
T Consensus 309 ~~p~~-~~~~~~~Ff~kynDPi-YvK~eKle----------------------------------il~~la~~~nl~qvl 352 (734)
T KOG1061|consen 309 KRPEI-LKVEIKVFFCKYNDPI-YVKLEKLE----------------------------------ILIELANDANLAQVL 352 (734)
T ss_pred hChHH-HHhHhHeeeeecCCch-hhHHHHHH----------------------------------HHHHHhhHhHHHHHH
Confidence 44331 0000000000001110 01111111 122222233344566
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHH
Q 000050 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2622)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp 1926 (2622)
..+...-.+.+.+.-+.|+.+++.++...... ...++.++..+.-.-.-+-+.+...+.++.++.+... ..+++
T Consensus 353 ~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~ 426 (734)
T KOG1061|consen 353 AELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVA 426 (734)
T ss_pred HHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhh
Confidence 66666667777777888899999888654432 3445555555553333344456677778888776543 55666
Q ss_pred HHhhhcCC-CChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHH
Q 000050 1927 ILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985 (2622)
Q Consensus 1927 ~L~~~L~d-~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A 1985 (2622)
.+...+.+ .+|+.|.+..+.+|+-..... -...++..+.+...|....|+-.-
T Consensus 427 ~l~~~~~sl~epeak~amiWilg~y~~~i~------~a~elL~~f~en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 427 ILCENLDSLQEPEAKAALIWILGEYAERIE------NALELLESFLENFKDETAEVQLEL 480 (734)
T ss_pred hhcccccccCChHHHHHHHHHHhhhhhccC------cHHHHHHHHHhhcccchHHHHHHH
Confidence 66655554 468888888877777543332 235566666677777777776543
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0007 Score=88.65 Aligned_cols=325 Identities=17% Similarity=0.182 Sum_probs=203.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc-----hhHHHH-HHHHHHHHcC-----CC--CHHHHHHHHHHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-----EPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAA 1444 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~-----~~~v~~-ilp~ll~~l~-----D~--~~~VR~aa~~al 1444 (2622)
.++..+...++.+.+...-.+.+..+..+.+...... .-|... ++|.++...- +. ++.+=+.+...+
T Consensus 42 ~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~ 121 (415)
T PF12460_consen 42 RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLI 121 (415)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHH
Confidence 3444444445444345566667777766666543222 334443 7777766542 11 256777788888
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhcc----------CCCh--hhHHHHHHHHHHHH-hhCchhhhhhhhhhHHHHhhhhc-C
Q 000050 1445 RAMMSQLSAQGVKLVLPSLLKGLE----------DKAW--RTKQSSVQLLGAMA-YCAPQQLSQCLPKIVPKLTEVLT-D 1510 (2622)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~----------~~~w--~~r~~a~~~L~~la-~~~p~~l~~~L~~ivp~L~~~L~-D 1510 (2622)
+.++..++......++..+...+- +..+ ......+.++..+. ...++...+...+++..+..... .
T Consensus 122 ~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~ 201 (415)
T PF12460_consen 122 NLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSS 201 (415)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcC
Confidence 888899988877666666655433 1111 12222233333333 32333222244556666666543 3
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCh-hHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCC
Q 000050 1511 THPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 1589 (2622)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~~~~-~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~ 1589 (2622)
.++..|..+++++..+...+.+. .++.++..+..... ....
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~--------------------------------------~~~~ 243 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSIS--------------------------------------SSED 243 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhc--------------------------------------ccCC
Confidence 45889999999999988765433 34444444443330 0111
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC----------------C
Q 000050 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE----------------E 1653 (2622)
Q Consensus 1590 ~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~----------------~ 1653 (2622)
...+..+..++..+.+..-- ...|....+...+.+++.+ +++...++++++.+..-.++ .
T Consensus 244 ~~~~~~~~~~~~Wi~KaLv~--R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR 319 (415)
T PF12460_consen 244 SELRPQALEILIWITKALVM--RGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQR 319 (415)
T ss_pred cchhHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHH
Confidence 22233333333333322100 0013344566677777777 77889999999998875221 1
Q ss_pred CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH----HHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc
Q 000050 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2622)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~----l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 1729 (2622)
.|..++|.+++..++.... .|.....+++.+++.++... ++.++|-+++.+..+++.++.+++.++..+...-++
T Consensus 320 ~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 320 FFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 4678889998888765533 67778889999999888764 478899999999999999999999999999988888
Q ss_pred chhhhHHhHHHHHHhh
Q 000050 1730 QFQNYLQQVLPAILDG 1745 (2622)
Q Consensus 1730 ~f~p~l~~ii~~ll~~ 1745 (2622)
.+.+|+..++|.+++.
T Consensus 399 ~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 399 LISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998763
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0085 Score=76.72 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=179.0
Q ss_pred cCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHH
Q 000050 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2622)
Q Consensus 2220 g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2622)
.|..|.-...+.+.++..|.++-+-+|..|...+-.+....+ ++++|.++.+ ..-|.|. +++|..+|...+++|
T Consensus 135 ~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL----~EkLeDp-Dp~V~SAAV~VICEL 208 (877)
T KOG1059|consen 135 CIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRL----VEKLEDP-DPSVVSAAVSVICEL 208 (877)
T ss_pred cccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHH----HHhccCC-CchHHHHHHHHHHHH
Confidence 344455555677888888888899999999999999998887 7898886654 6667764 889999999999999
Q ss_pred HHhcCCCccCchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccChh-hHHHHHHHhhhcCCHhHHHHHHHHHHHHH
Q 000050 2300 IRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVD-PLVGDLLSSLQVSDAGIREAILTALKGVL 2377 (2622)
Q Consensus 2300 ~~~~~~~l~p~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~-~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi 2377 (2622)
+++.|..+-+ |-+.|.+.+.++ |..+-....+-+|.|.-+.||+. ++++.|.+.+.++. ......+++..|+
T Consensus 209 ArKnPknyL~----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~--AmSLlYECvNTVV 282 (877)
T KOG1059|consen 209 ARKNPQNYLQ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTV--AMSLLYECVNTVV 282 (877)
T ss_pred HhhCCccccc----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhH--HHHHHHHHHHHhe
Confidence 9999865444 555777877775 77888888999999988888754 67888888876532 1223344444444
Q ss_pred hh---cCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHH
Q 000050 2378 KH---AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFA 2454 (2622)
Q Consensus 2378 ~~---~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~ 2454 (2622)
.. .|..-..+....++.-|-..+.|+|+..+=.+.-|++.+++..|. .+...-+-++..+.+.+...|..+...|.
T Consensus 283 a~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~-~Vqa~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK-AVQAHKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred eehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-HHHHhHHHHHHHhccCCchhHHHHHHHHH
Confidence 33 121112456677778888888899999998889999999999885 44444444566667777777876766666
Q ss_pred HHHhhCCccccCChhHHHHHHHHHhhhccCC-hhHHHhH
Q 000050 2455 TFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREAS 2492 (2622)
Q Consensus 2455 ~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~-~~ir~~a 2492 (2622)
.++.. .-.-+|+..|..+....+ ..+|.--
T Consensus 362 gmVsk--------kNl~eIVk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 362 GMVSK--------KNLMEIVKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred HHhhh--------hhHHHHHHHHHHHHHhccchhHHHHH
Confidence 65533 123467777777665543 3555543
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.069 Score=70.76 Aligned_cols=251 Identities=23% Similarity=0.187 Sum_probs=159.2
Q ss_pred ChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhc--------HHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000050 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG--------VESLVSELLKGVGDNQASIRRSSAYLIGY 2138 (2622)
Q Consensus 2067 ~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~--------l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~ 2138 (2622)
-+.+.++.|+..|+....+...++-...++++..++. ++.+. .+.++..+.+. ++||.+-..+-.++..
T Consensus 523 vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~as~~skI~P~~i~lF~k~--s~DP~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 523 VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAASMESKICPLTINLFLKY--SEDPQVASLAQDLFEE 599 (1005)
T ss_pred eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhhhhhcchhHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 4677888899999988888788887778888877765 23211 23333333333 4456666666666666
Q ss_pred HHhhccccccccHHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCC
Q 000050 2139 FYKNSKLYLVDEAPNMISTLIVLLSDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGG 2214 (2622)
Q Consensus 2139 l~~~~~~~l~~~~~~il~~L~~~l~d~d----~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~ 2214 (2622)
++.. ...+.++....++.++..++-++ ......+...|..+++..+... +
T Consensus 600 l~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL-~------------------------ 653 (1005)
T KOG2274|consen 600 LLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL-P------------------------ 653 (1005)
T ss_pred HHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc-c------------------------
Confidence 6552 24566777788888888887544 4555666677776666554431 1
Q ss_pred ccccccCCCCcCc-hhhHHHHHHH-HccCCHHHHHHHHHHHHHHHhhcChhhhhhh-h------hhhhHHHHHhhcCCCC
Q 000050 2215 PILIPGFCLPKAL-QPLLPIFLQG-LISGSAELREQAALGLGELIEVTSEQSLKEF-V------IPITGPLIRIIGDRFP 2285 (2622)
Q Consensus 2215 ~~~l~g~~~~~~l-~~ilp~ll~~-L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~-v------~~i~~~Li~~l~~~~~ 2285 (2622)
+.+ ...+|.+.+. +.+++.+.-..+-+|+..++..+.+ .+..+ . --+...+-+.|.-+.+
T Consensus 654 ----------~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e-q~~t~~~e~g~~~~yImqV~sqLLdp~~s 722 (1005)
T KOG2274|consen 654 ----------NLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE-QLLTWHDEPGHNLWYIMQVLSQLLDPETS 722 (1005)
T ss_pred ----------HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH-HHHhhccCCCccHHHHHHHHHHHcCCccc
Confidence 111 1234444443 3455677778888999999877542 22211 1 1222334455554434
Q ss_pred HhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhh
Q 000050 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 2359 (2622)
Q Consensus 2286 ~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~ 2359 (2622)
...-..+-..+..|..+.|..+.|-+.++.+..++.++.. ...+-..-...+.+|.. ++.++++..|.+...
T Consensus 723 ds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~--t~~~~~l~FL~Slp~ 795 (1005)
T KOG2274|consen 723 DSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH--TDLDQLLNFLSSLPG 795 (1005)
T ss_pred hhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh--CCHHHHHHHHHhCCC
Confidence 4344444555667778888888899999998888877764 67777777777777755 778899998888443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0023 Score=83.50 Aligned_cols=436 Identities=18% Similarity=0.187 Sum_probs=239.0
Q ss_pred hhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcchH-HHHHHHHHHcCCCCHHHHHHHHhhhHhhHhh
Q 000050 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 1330 (2622)
Q Consensus 1252 ~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~-~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~ 1330 (2622)
+..++|-+-++.... +-..+.-+..++...| +..|... ..+..++.-..++++.+|..|.+.++.+-
T Consensus 47 vSslF~dvvk~~~T~------dlelKKlvyLYl~nYa----~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-- 114 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTR------DLELKKLVYLYLMNYA----KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-- 114 (734)
T ss_pred hHhhhHHHHhhcccC------CchHHHHHHHHHHHhh----ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe--
Confidence 444555444444431 1334544555554444 3444432 24677788889999999998877664331
Q ss_pred hccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000050 1331 MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2622)
Q Consensus 1331 ~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~ 1410 (2622)
+..-...+.+.+...+. +++..+|+.++.+.+.+-. .+++.....++++.|++++.|. ++.+-..|+-++..+.+.-
T Consensus 115 v~~i~ey~~~Pl~~~l~-d~~~yvRktaa~~vakl~~-~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLK-DDDPYVRKTAAVCVAKLFD-IDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESH 191 (734)
T ss_pred ehHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHhhc-CChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhC
Confidence 11112344555555544 4556789999998887653 3444444558999999999977 7888888999888888765
Q ss_pred cc-cchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHh
Q 000050 1411 GR-LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2622)
Q Consensus 1411 ~~-~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2622)
+. .......+++..++..+.+-+.--+ ...+..+....++. ....++..+...|.+.+..+..++...+-....
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 42 1112223444455555443322222 22333333333332 223455555556666665555666666655554
Q ss_pred hCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccc
Q 000050 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2622)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2622)
..+......+..+-|.++.++.. .++++-.|..-+..+....++ .+..-+..|.-...||-
T Consensus 269 ~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPi----------------- 329 (734)
T KOG1061|consen 269 YLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPI----------------- 329 (734)
T ss_pred HHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCch-----------------
Confidence 43332233344455555554443 447776666655555443321 11111111111112221
Q ss_pred cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
-++..=.+++..++.. . -+++++..+.+...+-+.+.-..+++|+|.++
T Consensus 330 -----------------------YvK~eKleil~~la~~--~------nl~qvl~El~eYatevD~~fvrkaIraig~~a 378 (734)
T KOG1061|consen 330 -----------------------YVKLEKLEILIELAND--A------NLAQVLAELKEYATEVDVDFVRKAVRAIGRLA 378 (734)
T ss_pred -----------------------hhHHHHHHHHHHHhhH--h------HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhh
Confidence 1111122233222221 1 23445666666666666777778888888888
Q ss_pred hhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccC-CChhhHHHHHHHHHHhhhh
Q 000050 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRS 1726 (2622)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-~~~~vR~~al~~l~~L~~~ 1726 (2622)
....+. .+.++.+++.++...++ +...+...+-.+.+..+..+ +.+++.+-....+ .+++.|.+.+..++.-+..
T Consensus 379 ik~e~~--~~cv~~lLell~~~~~y-vvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 379 IKAEQS--NDCVSILLELLETKVDY-VVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred hhhhhh--hhhHHHHHHHHhhcccc-eeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 776655 67777777777654433 22334444455555444332 4444444333333 4677888888888888877
Q ss_pred hCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000050 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2622)
Q Consensus 1727 ~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~l 1764 (2622)
+.+ ...++..+++...|+...|+..-+.+.-.+
T Consensus 455 i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ik~ 487 (734)
T KOG1061|consen 455 IEN-----ALELLESFLENFKDETAEVQLELLTAAIKL 487 (734)
T ss_pred cCc-----HHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 765 244677777888888777776655554443
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.13 Score=70.18 Aligned_cols=637 Identities=17% Similarity=0.192 Sum_probs=310.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--c-------hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh
Q 000050 1888 NTLISSLASSSSERRQVAGRALGELVRKLGE--R-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2622)
Q Consensus 1888 ~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~--~-------~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~ 1958 (2622)
..++..+.+.++..|......++.++...-. . +...++..+.+.+.|-++-+|..+...+..+......
T Consensus 315 ~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-- 392 (1251)
T KOG0414|consen 315 TLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-- 392 (1251)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC--
Confidence 3344467788888999888888888754311 1 2235888888889999999999999998888765432
Q ss_pred HHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh----------hhhhHHHHHHhcccCC------chhHHH
Q 000050 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA----------IDEIVPTLLHALEDDQ------TSDTAL 2022 (2622)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~----------~~~ilp~Ll~~L~~~~------~~~~aL 2022 (2622)
.......++......+.|.+.-||.+|++.+..+....+... +++.+..+-+.+.+.. ....-.
T Consensus 393 p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s 472 (1251)
T KOG0414|consen 393 PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRS 472 (1251)
T ss_pred CccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhh
Confidence 122446677777778889999999999998888866543211 1222222221221110 000000
Q ss_pred HHHHHHHhh-------h------cccccc---chhhhhhcCCCchH--HHH-HHHHHHHHhCCChhhhHhhhHHHHHHhc
Q 000050 2023 DGLKQILSV-------R------TTAVLP---HILPKLVHLPLSAF--NAH-ALGALAEVAGPGLNFHLGTILPALLSAM 2083 (2622)
Q Consensus 2023 ~~L~~il~~-------~------~~~ilp---~Lip~L~~~~~~~~--~~~-aL~sLa~~~g~~l~~~l~~il~~Ll~~l 2083 (2622)
.....++.. . +..-.+ .+-....+.|.... ... -+..+- -+-+|..-+...+|.+.+.+
T Consensus 473 ~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~--d~~sf~~~ms~~~~ii~~ll 550 (1251)
T KOG0414|consen 473 ENVKGVIEDAEKDSTTEKNQLESSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLE--DAISFSDEMSEAIPIISQLL 550 (1251)
T ss_pred hhcccceeechhhhhhhccccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0 000000 00000011110000 000 011111 13446666778888888887
Q ss_pred CCCC-HHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHH
Q 000050 2084 GDDD-MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVL 2161 (2622)
Q Consensus 2084 ~~~~-~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~-~~l~~~~~~il~~L~~~ 2161 (2622)
...+ .+|.+. +..+- .+..++-++...-+..++..+=..+..+|.+...+...++-..+ ..-......+.+.|+.+
T Consensus 551 ~s~t~teV~E~-Idfl~-~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l 628 (1251)
T KOG0414|consen 551 FSKTTTEVKEA-IDFLV-RCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKL 628 (1251)
T ss_pred hcCChHHHHHH-HHHHH-HHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHH
Confidence 5544 445443 22221 22334445545555555555545556688888888877754432 22212225667777777
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHH--hhchhhhhhhhcCCccccccCC--CCcCchhhHHHHH-H
Q 000050 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI--STSRDKERRKKKGGPILIPGFC--LPKALQPLLPIFL-Q 2236 (2622)
Q Consensus 2162 l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l--~~~~~~~~~~~~~~~~~l~g~~--~~~~l~~ilp~ll-~ 2236 (2622)
+.|....=+.+--+.++.++.. ...-+.++..+-+.. +..+.. .....++...++-.. .|.-+..-+..++ -
T Consensus 629 ~~~~s~~d~~slE~vl~~lv~~--~~Id~~Vi~~Lw~~ftlq~~~~~-~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~i 705 (1251)
T KOG0414|consen 629 LIDASIGDLTSLEEVLCELVAR--GYIDAAVINKLWEIFTLQKKGTT-NEQSRGSLIILGMASRSKPSIVLANLDLLVQI 705 (1251)
T ss_pred HhcccccchhhHHHHHHHHHhC--CCccHHHHHHHHHHHHHHhccCc-hhhhccceeehhhhhccChhhhhhhhHHHHHh
Confidence 6655433233333334444331 111122222221111 110000 000111110011000 0111111111111 1
Q ss_pred HHccCCHHHHHHHHHHHHHHHhhcChh---hhhhh----hhhhhHHHHHhhcC---CCC--H-hhHHHHHHHHHHHHHhc
Q 000050 2237 GLISGSAELREQAALGLGELIEVTSEQ---SLKEF----VIPITGPLIRIIGD---RFP--W-QVKSAILSTLSIIIRKG 2303 (2622)
Q Consensus 2237 ~L~~~~~~~r~~aa~~L~~l~~~~~~~---~l~p~----v~~i~~~Li~~l~~---~~~--~-~vk~~al~~L~~L~~~~ 2303 (2622)
|+ |.+.....++..+..++.....+ .-.++ -..+.+.|-..+-. +.+ | .+...++.++-.+.. .
T Consensus 706 gl--g~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~-~ 782 (1251)
T KOG0414|consen 706 GL--GEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM-L 782 (1251)
T ss_pred cc--CcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc-C
Confidence 22 34555556666666665433210 01111 11122222222111 111 2 344555555544433 1
Q ss_pred CCCccCchHHHHHHHHHH------------hCCCC--------HHHHHHHHHHHHHHHhcc-cChhhHHHH---------
Q 000050 2304 GIALKPFLPQLQTTFIKC------------LQDST--------RTVRSSAALALGKLSALS-TRVDPLVGD--------- 2353 (2622)
Q Consensus 2304 ~~~l~p~l~~L~~~llk~------------L~d~~--------~~vR~~Aa~aLg~L~~~~-~~~~~ll~~--------- 2353 (2622)
|..+ ..++.+...+. ..|++ ..++..-..+.|.++.-+ -.++.-++.
T Consensus 783 Pe~l---a~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~~~ 859 (1251)
T KOG0414|consen 783 PEVL---ATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKIKT 859 (1251)
T ss_pred hHHH---HHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 11222222111 11110 112222344555542211 011111110
Q ss_pred ------------HHHhhhcC-----C-----HhHHHHHHHHHHHHHhh---cCCCCChHHHHHHHHHHHHhhcC----CC
Q 000050 2354 ------------LLSSLQVS-----D-----AGIREAILTALKGVLKH---AGKSVSSAVKIRVYSVLKDLVYH----DD 2404 (2622)
Q Consensus 2354 ------------Ll~~l~~~-----d-----~~vr~~~l~AL~~vi~~---~g~~~~~~~~~~i~~~L~~~l~~----~~ 2404 (2622)
-++..+.. + ...-....+++..+... .|. .....+..+++.+.++. ++
T Consensus 860 ~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~ge---k~lLg~f~piv~e~c~n~~~~sd 936 (1251)
T KOG0414|consen 860 ELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGE---KSLLGRFAPIVVEGCRNPGLFSD 936 (1251)
T ss_pred HHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHhcCCCcCCC
Confidence 00000000 0 00112344455554443 131 23566777777777754 57
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhh-cCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcc
Q 000050 2405 DHVRVSAASILGIMSQCMEDGQLADLLQELLNL-ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD 2483 (2622)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~-~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~ 2483 (2622)
+..+.+|.-++|++.-.. ......-++-+... -.+++...|...+.+++-+....|. +.+...+.+...+.|
T Consensus 937 p~Lq~AAtLaL~klM~iS-a~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn------lie~~T~~Ly~rL~D 1009 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCIS-AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN------LIEPWTEHLYRRLRD 1009 (1251)
T ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc------ccchhhHHHHHHhcC
Confidence 889999999999987432 22222333333222 2356666787777788777666554 345667888899999
Q ss_pred CChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhh
Q 000050 2484 EKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2622)
Q Consensus 2484 ~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2622)
.++.+|++|+-.+..++....- .....++.+..++.|++..+|..|-.-.+-++++. +.+-..|+.
T Consensus 1010 ~~~~vRkta~lvlshLILndmi-------KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPd 1075 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILNDMI-------KVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPD 1075 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHhhhh-------HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchH
Confidence 9999999999999998877542 24567888999999999999999999999888876 444443333
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00043 Score=88.01 Aligned_cols=277 Identities=21% Similarity=0.208 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHH
Q 000050 1236 MLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEA 1315 (2622)
Q Consensus 1236 a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~ 1315 (2622)
++-|..-+=..||.. ...++..+|... ..+.+|.+++.=+|-.+. ...+ .++.+.+-+.+...+.-
T Consensus 399 alyAlGLIhA~hG~~----~~~yL~~~Lk~~-----~~e~v~hG~cLGlGLa~m--GSa~---~eiYe~lKevLy~D~Av 464 (929)
T KOG2062|consen 399 ALYALGLIHANHGRG----ITDYLLQQLKTA-----ENEVVRHGACLGLGLAGM--GSAN---EEIYEKLKEVLYNDSAV 464 (929)
T ss_pred hhhhhhccccCcCcc----HHHHHHHHHHhc-----cchhhhhhhhhhccchhc--cccc---HHHHHHHHHHHhccchh
Confidence 344433233335554 344444555542 245778777655554332 1112 34566666666655544
Q ss_pred HHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHH
Q 000050 1316 VQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKR 1395 (2622)
Q Consensus 1316 Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~ 1395 (2622)
.-.++.-+++-++ .+....+.++.|+..-.+-+.....|+-+.+++.++-+... +.-+.+.+++.++ ||..
T Consensus 465 sGEAAgi~MGl~m--lGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe------~Ad~lI~el~~dk-dpil 535 (929)
T KOG2062|consen 465 SGEAAGIAMGLLM--LGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE------DADPLIKELLRDK-DPIL 535 (929)
T ss_pred hhhHHHHhhhhHh--hCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh------hhHHHHHHHhcCC-chhh
Confidence 4444544454433 34445667777766554333346677888888887765432 3445677788887 8999
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhcc-CCChhh
Q 000050 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRT 1474 (2622)
Q Consensus 1396 R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~-~~~w~~ 1474 (2622)
|.++++.+..---+-|+ ..-+..+++. ...|.+++||++|..+++.+.-.-+ ..+|..++.|. +-+..+
T Consensus 536 R~~Gm~t~alAy~GTgn--nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~dp-----~~~~s~V~lLses~N~HV 605 (929)
T KOG2062|consen 536 RYGGMYTLALAYVGTGN--NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRDP-----EQLPSTVSLLSESYNPHV 605 (929)
T ss_pred hhhhHHHHHHHHhccCc--hhhHHHhhcc---cccccchHHHHHHHHHheeeEecCh-----hhchHHHHHHhhhcChhh
Confidence 99998877665444442 2233444443 4789999999999999987744322 33455566665 357889
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---ChhHHhHHHHHHhhcCCCCh
Q 000050 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPND 1551 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~ilp~Ll~~l~d~~~ 1551 (2622)
|.|+..+||-.+.+... ...+..|-.+..|+..-||..|+-+++-+.-... +|.+..+...+.+.+.|..+
T Consensus 606 RyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 606 RYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred hhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhh
Confidence 99999999866544322 2233444456779999999999988887754332 35666777777777766544
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=99.18 Aligned_cols=348 Identities=19% Similarity=0.205 Sum_probs=221.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHh--hCchhhhhh
Q 000050 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQC 1496 (2622)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~ 1496 (2622)
..+++....++..+....|+...+++..+... ...+..+..+...+.-.....-.+++..+..+.. +.|......
T Consensus 62 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~---~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~ 138 (815)
T KOG1820|consen 62 IQLLSFGLKCLDSKRVNIRDTKTQSLLRIGKL---EDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKA 138 (815)
T ss_pred eeeccchhhhcccccccccCcchhHHHHHHHh---hhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccc
Confidence 35666777777766666777766666665111 1223344444444444444444445555555543 344333222
Q ss_pred hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChh----HH----hHHHHHHhh----------------------c
Q 000050 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE----IA----SLVPTLLMG----------------------L 1546 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~----i~----~ilp~Ll~~----------------------l 1546 (2622)
+...++.+. +..||..+.+.+..+.++.++.. .. .++..+-.. -
T Consensus 139 ~~~~~~~l~------D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (815)
T KOG1820|consen 139 FIKHVGSLA------DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDE 212 (815)
T ss_pred ccccCcccc------ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccc
Confidence 222222222 45688888888888887766421 01 111111110 0
Q ss_pred CCCChhHH-H----HHHHHHhccccccCC-------hhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCccc
Q 000050 1547 TDPNDHTK-Y----SLDILLQTTFVNTVD-------APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2622)
Q Consensus 1547 ~d~~~~~r-~----al~~L~~~~~~~~~~-------~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2622)
.+|+...+ . ..+... ..+....+ ...+..+.+.+...+.+..|..|..|.+.+...++... .....
T Consensus 213 ~~~n~~e~~~~~~~~~~~~~-~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~ 290 (815)
T KOG1820|consen 213 SDPNVKEQLEKPERGLQRSK-SGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVK 290 (815)
T ss_pred cCCChhhccccccccccccc-CCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-ccccc
Confidence 11111111 0 000000 01111011 13455677788888999999999999998888776433 12345
Q ss_pred chHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch
Q 000050 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2622)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~ 1691 (2622)
.|...+...+...+.|.+-.|-..++.+|..++..++.. +...+.|.+++.++...+ ..|..+..++..++..
T Consensus 291 ~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~-~l~d~l~~~~d~~~ns--- 366 (815)
T KOG1820|consen 291 GYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKS-ELRDALLKALDAILNS--- 366 (815)
T ss_pred CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccH-HHHHHHHHHHHHHHhc---
Confidence 677777777777888999999999999999999999865 445667778777765443 2454444445555442
Q ss_pred hHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc--chhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 000050 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2622)
Q Consensus 1692 ~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~--~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~ 1769 (2622)
..+..+.+.++..+.+.++..|..+..+|.......+. .+..-+..++|.+.....|.+.+||.+|..++..+++.+|
T Consensus 367 ~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 367 TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 24567778889999999999999999999998888773 3445578899999999999999999999999999999999
Q ss_pred hchhhhhHHHHh
Q 000050 1770 TTSLPLLLPAVE 1781 (2622)
Q Consensus 1770 ~~~i~~llp~l~ 1781 (2622)
...+..++..+.
T Consensus 447 e~~~~k~L~~~~ 458 (815)
T KOG1820|consen 447 EEVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHHhhc
Confidence 887776665554
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=79.43 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh---hHHhHHHHHHhhcCCCC
Q 000050 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 1550 (2622)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~ilp~Ll~~l~d~~ 1550 (2622)
.|+|++..|.+++...++.+..+++.|+|.++.+++|++++||..|+++|.++++..++. ++.++++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 588999999999999899999999999999999999999999999999999999988753 45788888888889998
Q ss_pred hhHHHHHHHH
Q 000050 1551 DHTKYSLDIL 1560 (2622)
Q Consensus 1551 ~~~r~al~~L 1560 (2622)
..+|.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 8888655443
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00015 Score=90.87 Aligned_cols=270 Identities=17% Similarity=0.158 Sum_probs=168.9
Q ss_pred HHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh---------hc
Q 000050 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA---------TT 1771 (2622)
Q Consensus 1701 l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~---------~~ 1771 (2622)
+...+.+.+..||..|+..+-.+.. |-.+ -..+.....+.++|++++||.+|.+.+...-+.++ .+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--cccc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 4445567788999999998887776 3221 12356777888999999999999988876665551 12
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH------------hcC---------------------CcccccccCC
Q 000050 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK------------VAG---------------------TSGKALLEGG 1818 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~------------~~~---------------------~~~~~~~~~~ 1818 (2622)
..+..+..+-..+.|..|.+|..+.+++|.+=.. +.+ .+||.+..+.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 4456777788889999999999999999876210 000 0111111100
Q ss_pred -CCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCC
Q 000050 1819 -SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2622)
Q Consensus 1819 -~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~ 1897 (2622)
.+++++.. ..+++. | -..++.-++.|.-.+||.+|+..++.++.+.|. +-...+..++.+++|.
T Consensus 358 psee~d~~~----~siI~s-G------ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 358 PSEEDDEEE----ESIIPS-G------ACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDE 422 (823)
T ss_pred chhhccccc----cccccc-c------ccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccH
Confidence 00000000 001110 0 011222346788889999999999999998774 2345677788889999
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC
Q 000050 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2622)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~ 1977 (2622)
..++|..|+.+|..+.... .+..+.++.+...+.|.++++|.+.-.-|+.. .....+.+.-.+..++..+...-+|
T Consensus 423 ~~~VRL~ai~aL~~Is~~l--~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~~lL~~L~kyPqD- 498 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL--AIREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLECIDMCVAHLLKNLGKYPQD- 498 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh--eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhhCCCC-
Confidence 9999999999999988762 34566778888888899999998866555431 1111122222223333333333234
Q ss_pred cHHHHHHHHHHHHHHHHHhCh
Q 000050 1978 ILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1978 d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
|.....|++.+.++.+.
T Consensus 499 ----rd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 499 ----RDEILRCMGRIGQNHRR 515 (823)
T ss_pred ----cHHHHHHHHHHhccChh
Confidence 34445577777666554
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.014 Score=74.32 Aligned_cols=458 Identities=18% Similarity=0.176 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhH
Q 000050 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRK-LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2622)
Q Consensus 1881 ~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~-~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l 1959 (2622)
+.+..++..+.+-+.++++..-..|..|++.+-.. +.+.+.+.+-.+|.. .+...-+|+.++.++-.+..... +..
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~sp-Dl~ 183 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSP-DLV 183 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCc-ccc
Confidence 44555566666667788888888888888765422 122223333333332 23446789999998888877643 222
Q ss_pred HHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccc
Q 000050 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039 (2622)
Q Consensus 1960 ~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~ 2039 (2622)
. ...-...+...|.|.+..|--++...+..+.+...+ .....+|. ++..|..++...+-....+
T Consensus 184 ~--~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~-~yk~~~~~-------------avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 184 N--PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE-SYKTCLPL-------------AVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred C--hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH-HHhhhHHH-------------HHHHHHHHHhhcccchhhc
Confidence 1 123344556788888888877777777766654433 22222332 2333333332211111111
Q ss_pred hhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCC--CHHHHH-----H-HHHHHHHhhhccCh--hc
Q 000050 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD--DMDVQS-----L-AKEAAETVTLVIDE--EG 2109 (2622)
Q Consensus 2040 Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~--~~~vr~-----~-a~~al~~l~~~~~~--~~ 2109 (2622)
.-...-.|....-..+.|.....--...-...+..++..+++...++ ...++. + ..+++.-+ ..+|. +.
T Consensus 248 Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~-~h~D~e~~l 326 (938)
T KOG1077|consen 248 TYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA-IHLDSEPEL 326 (938)
T ss_pred eeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH-HHcCCcHHH
Confidence 10000001111011112211100001112233444555555554421 112211 1 12233222 23343 34
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCccc
Q 000050 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEV 2188 (2622)
Q Consensus 2110 l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~-d~d~~V~~~a~~aL~~l~~~~~~~~ 2188 (2622)
+...+..|.+.+.+.....|..|+..+..++.... -.+.+..-...++.++. +.|..+|+.|.+.|-.++...
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~---- 400 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS---- 400 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh----
Confidence 77788888999999999999999999988876421 11222333556677777 889999999998888876532
Q ss_pred hhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhh
Q 000050 2189 QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEF 2268 (2622)
Q Consensus 2189 l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~ 2268 (2622)
....|+.-+++.|.+.+...|+....-++-+++..- ..+.=|
T Consensus 401 -------------------------------------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA-tDy~Wy 442 (938)
T KOG1077|consen 401 -------------------------------------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA-TDYSWY 442 (938)
T ss_pred -------------------------------------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCcchh
Confidence 122344455566666677778777777777776653 345555
Q ss_pred hhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhc---
Q 000050 2269 VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSAL--- 2343 (2622)
Q Consensus 2269 v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~--- 2343 (2622)
|+.+ --|+|+.++..+++|=.-.++.+. -...+++|. -..++..|+.+ ++.+-..++.-||....+
T Consensus 443 Vdvi-LqLiriagd~vsdeVW~RvvQiVv-----Nnedlq~ya---ak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~ 513 (938)
T KOG1077|consen 443 VDVI-LQLIRIAGDYVSDEVWYRVVQIVV-----NNEDLQGYA---AKRLFEYLQKPACHENMVKVGGYILGEFGNLIAD 513 (938)
T ss_pred HHHH-HHHHHHhcccccHHHHHHhheeEe-----cchhhhHHH---HHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcC
Confidence 5444 457787776544443222111110 011222221 12344555555 777888888888877443
Q ss_pred ccChhh--HHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000050 2344 STRVDP--LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416 (2622)
Q Consensus 2344 ~~~~~~--ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2622)
+|+..+ .+.-+.+.+....+..|...+..+..++... ++..+.|+........--|.+++.-+.+-|.
T Consensus 514 ~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-----PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 514 DPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-----PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred CCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 455444 3444556666566677777777777777542 4566677777666555556666655555543
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.2 Score=68.72 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=106.4
Q ss_pred CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHh-cccChhhHHHHHHHhhhcC
Q 000050 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLSA-LSTRVDPLVGDLLSSLQVS 2361 (2622)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~-d~~~~vR~~Aa~aLg~L~~-~~~~~~~ll~~Ll~~l~~~ 2361 (2622)
.+++.+.+|-.+|+.+.--.. .|...=.+.|+..+. .+++.+|..+..++|.++. +..-+++.-+-|...+++.
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~ 1010 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDE 1010 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCc
Confidence 467899999999998764322 344444556666666 4799999999999999954 4555888888899999999
Q ss_pred CHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCC
Q 000050 2362 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSP 2441 (2622)
Q Consensus 2362 d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~ 2441 (2622)
+..||.+++-.|..+|-+. + -..++.+-. +..++.|+++.++..|-.-+..|..-- ..+..++++++.++.+.
T Consensus 1011 ~~~vRkta~lvlshLILnd---m-iKVKGql~e-MA~cl~D~~~~IsdlAk~FF~Els~k~--n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1011 SPSVRKTALLVLSHLILND---M-IKVKGQLSE-MALCLEDPNAEISDLAKSFFKELSSKG--NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred cHHHHHHHHHHHHHHHHhh---h-hHhcccHHH-HHHHhcCCcHHHHHHHHHHHHHhhhcc--cchhhhchHHHHhhccC
Confidence 9999999999999988642 1 122233333 335778999999988776666666432 35777888887766554
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.14 Score=66.22 Aligned_cols=342 Identities=15% Similarity=0.141 Sum_probs=199.2
Q ss_pred HHHHHHHHHHhhhCccchhhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhc--ccchhHHHH-HHHHHH
Q 000050 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG--RLFEPYVIQ-MLPLLL 1426 (2622)
Q Consensus 1357 ~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-------~~~~~~~R~~al~al~~La~~~~--~~~~~~v~~-ilp~ll 1426 (2622)
+|+.++-......+...+. ++++++...+. +-+|++..++|+..+..+..... ..+...+.. ++++++
T Consensus 389 aal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 4555555555566666565 78888887772 12367788899999888887322 233333443 578888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhh--CchhhhhhhhhhHHH
Q 000050 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPK 1503 (2622)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~--~p~~l~~~L~~ivp~ 1503 (2622)
..+.++.-..|..+++.+..+-..+++.++ ........+.+.+..-.++..|..++.-+..+ ....++.+.|..+..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 899999999999999999888777776654 55666667778887778888888888777654 334577888888988
Q ss_pred HhhhhcCCCHHHHHHHHHHH-HHHhhhcCC--hhH-HhHHHHHHhh----cCCC---ChhHH----HHHHHHHhc-cccc
Q 000050 1504 LTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLMG----LTDP---NDHTK----YSLDILLQT-TFVN 1567 (2622)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~i-~~ilp~Ll~~----l~d~---~~~~r----~al~~L~~~-~~~~ 1567 (2622)
++.+-++-+-++-..+.+.+ +.+.+.+.. +++ ..++..+++. +.++ ...+. .|...|..+ +.+-
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 88888776666655554433 344444331 122 3344433333 3222 11111 121111110 1111
Q ss_pred cCC-h-----hhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCH-HHHHHHH
Q 000050 1568 TVD-A-----PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 1640 (2622)
Q Consensus 1568 ~~~-~-----~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~-~vR~~a~ 1640 (2622)
..+ . .......|.+.=.+.+.-.+.-+.|++++.+..-.. +++.|....+...+.+.+.++.. .--+.++
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 111 1 122334444444455555577788888887643321 35556666666666666666553 5556777
Q ss_pred HHHHHHHhhhCCC------CchhhHHHHHHHhhhcCC-hHHHHHHHHHHHHHHHHhchhHHHhHhHHHHH
Q 000050 1641 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703 (2622)
Q Consensus 1641 ~aL~~L~~~~g~~------~~~~ll~~Ll~~L~~~~~-~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~ 1703 (2622)
-++..++..-+.+ |..-+...+...+.++.. -.++.++++-+-.++-..+.+-+++.+|.+.+
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~ 773 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFIS 773 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHH
Confidence 7788877644333 223333444455554433 13555666555555555555555555554443
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.3 Score=69.90 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcccc
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRLF 1414 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~--~~~~~R~~al~al~~La~~~~~~~ 1414 (2622)
+....+...+........|+-.+.+++.+... |.... .+.++..+...+.+. +++....++.-+++.+.+..|+..
T Consensus 51 ~~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~-~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~ 128 (2067)
T KOG1822|consen 51 KLEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFS-LYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMI 128 (2067)
T ss_pred HHHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhh-HHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhh
Confidence 34556667777777788999999999999987 54332 334555666666554 466677788888999999888766
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhC
Q 000050 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2622)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-----~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~ 1489 (2622)
..-+...+..+.+..+..+..+|......+......+... ..+.+.-..-..+.+....+|..+..++.++....
T Consensus 129 ~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~ 208 (2067)
T KOG1822|consen 129 GRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLG 208 (2067)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhc
Confidence 5556667777777777777777777666655554444311 23444444445566666678999999988887654
Q ss_pred chhh-hhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhc
Q 000050 1490 PQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1490 p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
+..+ ...+.......++...+.+.+||.+-+++++.+....
T Consensus 209 ~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 209 GPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred CccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 4333 3445555555667778889999999999999988755
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.16 Score=65.81 Aligned_cols=285 Identities=21% Similarity=0.223 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHH
Q 000050 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRD 1714 (2622)
Q Consensus 1635 vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~ 1714 (2622)
...-|.-++|-+-...|. +....|.+.|++.+...+|.+++-++|-... |... .++...+...+...+.-.=+
T Consensus 395 ~EGGalyAlGLIhA~hG~----~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~m--GSa~-~eiYe~lKevLy~D~AvsGE 467 (929)
T KOG2062|consen 395 KEGGALYALGLIHANHGR----GITDYLLQQLKTAENEVVRHGACLGLGLAGM--GSAN-EEIYEKLKEVLYNDSAVSGE 467 (929)
T ss_pred cccchhhhhhccccCcCc----cHHHHHHHHHHhccchhhhhhhhhhccchhc--cccc-HHHHHHHHHHHhccchhhhh
Confidence 334677788877665554 4677788888888778899999888775433 3221 22333333333333333334
Q ss_pred HHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHH
Q 000050 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1793 (2622)
Q Consensus 1715 ~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~ 1793 (2622)
++-..++-+-.-.+. ++.+.-++.+..+ .++.+.....-.+ . +..|+... ..-|.+.+.+.|++.-.|.
T Consensus 468 AAgi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RGl~vGi-a-L~~ygrqe--~Ad~lI~el~~dkdpilR~ 537 (929)
T KOG2062|consen 468 AAGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRGLAVGI-A-LVVYGRQE--DADPLIKELLRDKDPILRY 537 (929)
T ss_pred HHHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHHHHHhH-H-HHHhhhhh--hhHHHHHHHhcCCchhhhh
Confidence 444444433222211 3344545555443 2233322211111 1 12233221 2223344445666666666
Q ss_pred HHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHH
Q 000050 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-MVRSDVSLSVRQAALHVWKTIV 1872 (2622)
Q Consensus 1794 ~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~-~~~~D~~~~VR~aA~~~l~~l~ 1872 (2622)
+.+-.++- ...|.. .+..+..+. ...+|.+..||++|.-.+|.+.
T Consensus 538 ~Gm~t~al---------------------------------Ay~GTg-nnkair~lLh~aVsD~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 538 GGMYTLAL---------------------------------AYVGTG-NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL 583 (929)
T ss_pred hhHHHHHH---------------------------------HHhccC-chhhHHHhhcccccccchHHHHHHHHHheeeE
Confidence 54433321 111111 111222222 2368999999999999999888
Q ss_pred hhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHH
Q 000050 1873 ANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951 (2622)
Q Consensus 1873 ~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li 1951 (2622)
-..|.+ .+.++..|. +-|+.+|..++-+||-.|...|.. ..+..|.....|+..-|||+||.+++-|+
T Consensus 584 ~~dp~~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 584 FRDPEQ--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ecChhh--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 776654 233333444 558899999999999988877754 34455555566888899999999999887
Q ss_pred HhhChhhHHHhHHhHHHHHHHHhcCCcHHHH
Q 000050 1952 ASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2622)
Q Consensus 1952 ~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2622)
-++.+ ..-|.+..+...+.+.+.|.+++..
T Consensus 653 ~Q~t~-~~~pkv~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 653 IQQTE-QLCPKVNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred Hhccc-ccCchHHHHHHHHHHHhhhhhhHHH
Confidence 76653 4445567777777778888766643
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0031 Score=79.69 Aligned_cols=245 Identities=20% Similarity=0.182 Sum_probs=147.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC
Q 000050 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2622)
Q Consensus 1738 ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~ 1817 (2622)
+...+..+..|.+..||..|.+++-.+-+ +-+.-..+.....+.+.|++..+|.++++++--+-+..++..
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~------- 269 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL------- 269 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc-------
Confidence 44446777788889999999998776654 222223345556677889999999999999887755443211
Q ss_pred CCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCC
Q 000050 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2622)
Q Consensus 1818 ~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~ 1897 (2622)
+.+ +.+ ....+..+..+|...+|.++.||-.|.+.+|.+-.....- +.+++-+.++..+.-.
T Consensus 270 --e~e--~~e-----------~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~---i~QTLdKKlms~lRRk 331 (823)
T KOG2259|consen 270 --ERE--SEE-----------EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI---IQQTLDKKLMSRLRRK 331 (823)
T ss_pred --cch--hhh-----------hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH---HHHHHHHHHhhhhhhh
Confidence 000 000 0123456677777889999999999999999876543221 1122333333322110
Q ss_pred -CHHHHHHHHHHHHHHHHH--hccch-------------hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHH
Q 000050 1898 -SSERRQVAGRALGELVRK--LGERV-------------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLS 1961 (2622)
Q Consensus 1898 -~~~~R~~A~~~L~~lv~~--~~~~~-------------l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~ 1961 (2622)
....|-.....=|++... .+..+ -......+..++.|+-.+||.++...++.+..+..+
T Consensus 332 r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----- 406 (823)
T KOG2259|consen 332 RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----- 406 (823)
T ss_pred hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-----
Confidence 000011111111111000 00000 011224567788888888999999888887654433
Q ss_pred hHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCC
Q 000050 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2622)
Q Consensus 1962 ~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2622)
|-...+..+..+++|...+||..|..++..+..+.. .-++.++.+++.|++..
T Consensus 407 FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i~eeql~~il~~L~D~s 459 (823)
T KOG2259|consen 407 FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA--IREEQLRQILESLEDRS 459 (823)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--ecHHHHHHHHHHHHhcC
Confidence 234556677788888889999998888888876632 33567788888887654
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.066 Score=68.61 Aligned_cols=351 Identities=15% Similarity=0.208 Sum_probs=189.3
Q ss_pred cCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 000050 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2622)
Q Consensus 1348 ~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~ 1427 (2622)
.+..|.+...+...+..++..-. +-.+ -++..+++-+.+. |+.... .|+.+++..-++.|..-+..=+|.++-
T Consensus 84 ss~kysEKqIGYl~is~L~n~n~-dl~k--lvin~iknDL~sr-n~~fv~---LAL~~I~niG~re~~ea~~~DI~KlLv 156 (938)
T KOG1077|consen 84 SSNKYSEKQIGYLFISLLLNENS-DLMK--LVINSIKNDLSSR-NPTFVC---LALHCIANIGSREMAEAFADDIPKLLV 156 (938)
T ss_pred hcCCccHHHHhHHHHHHHHhcch-HHHH--HHHHHHHhhhhcC-CcHHHH---HHHHHHHhhccHhHHHHhhhhhHHHHh
Confidence 45556666666666665554321 1111 2333344444444 454444 444555544444443322222232222
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhh
Q 000050 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2622)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~ 1506 (2622)
-++..+.||+.++-|+-.+....++-. .......++..|++++.++-.++..++..++...|+....+++.-+..|..
T Consensus 157 -S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r 235 (938)
T KOG1077|consen 157 -SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR 235 (938)
T ss_pred -CCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH
Confidence 257788999999999988888754331 235566677788888888888899999999988888888777776666554
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhc---CCCChhHH--HHHHHHHhccccccCChhhhhhHHHHH
Q 000050 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL---TDPNDHTK--YSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2622)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l---~d~~~~~r--~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2622)
.........++. .--.+++|.+..-+=.++... .|+....| ++++.+..
T Consensus 236 iv~~~~t~~qdY-------Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLn------------------- 289 (938)
T KOG1077|consen 236 IVVVVGTSLQDY-------TYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILN------------------- 289 (938)
T ss_pred HHhhcccchhhc-------eeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh-------------------
Confidence 432211111000 001123333321111111111 12211111 22222221
Q ss_pred HhhhcC----CCH---HHH-HHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC-
Q 000050 1582 HRGLRE----RSA---ETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE- 1652 (2622)
Q Consensus 1582 ~~~l~d----~~~---~vr-~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~- 1652 (2622)
..++ ++. ..+ ....+++. ++..++.. ...+...+..|.+.+.+....+|.-+.+.+..++..-..
T Consensus 290 --k~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e---~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~ 363 (938)
T KOG1077|consen 290 --KAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSE---PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI 363 (938)
T ss_pred --ccccCccccchHhhhhHHHHHHHHHH-HHHHcCCc---HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH
Confidence 1110 000 111 11122222 22222211 123455667777777888889999998888888765110
Q ss_pred CCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchh
Q 000050 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2622)
Q Consensus 1653 ~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~ 1732 (2622)
+....-...++..|+.+....+|+.+..-|=.++. .+..+.++..+++.+...++..|+....=..-+++.+..++.
T Consensus 364 davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~ 440 (938)
T KOG1077|consen 364 DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYS 440 (938)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcc
Confidence 11222244566777766666678777665554443 344567778888888888999998877777777777777766
Q ss_pred hhHHhHHHH
Q 000050 1733 NYLQQVLPA 1741 (2622)
Q Consensus 1733 p~l~~ii~~ 1741 (2622)
=|+.-++..
T Consensus 441 WyVdviLqL 449 (938)
T KOG1077|consen 441 WYVDVILQL 449 (938)
T ss_pred hhHHHHHHH
Confidence 665554443
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.014 Score=79.07 Aligned_cols=371 Identities=15% Similarity=0.156 Sum_probs=207.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH
Q 000050 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK 1457 (2622)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~ 1457 (2622)
..+..++... +.-.| .++..+..+++...-...-.-..+++.+.+++...+..+.-.+...++.+.-.-... .-.
T Consensus 253 kk~~~l~~kQ-eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~ 330 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES 330 (708)
T ss_pred HHHHHHHHHH-HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3344444443 34444 556667777765542222233478889999998888888877777777664321111 225
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh-h--
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-E-- 1534 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~-- 1534 (2622)
.++|.+...+.+++-.....++.+|.++++...-.-.-.-.+++|.+..++.|++ .|..|...|.+++..-... .
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence 7899999999988888899999999999875332211112467888999998754 5566777888776532222 1
Q ss_pred HHhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChh-hh-hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCC
Q 000050 1535 IASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAP-SL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2622)
Q Consensus 1535 i~~ilp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~-~l-~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 1610 (2622)
....+|.+.+.+. .++..+. +.+..++..........- .- ..+-..+.++++.+++ .....+.|++..-+..
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPL 484 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchH
Confidence 2456777777653 3444443 222222211110000000 00 1111222333333332 2345677776642111
Q ss_pred -CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-----Cc--hhhHHHHHHHhhhcCCh-HHHHHHHHH
Q 000050 1611 -KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NF--PDLVSWLLDALKSDNSN-VERSGAAQG 1681 (2622)
Q Consensus 1611 -~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-----~~--~~ll~~Ll~~L~~~~~~-~~r~~a~~~ 1681 (2622)
..+.+|+..++ ..+..++. ....+.|+|.++...-++ .+ ..++|++.+.|...... .....+...
T Consensus 485 k~~f~~~i~~L~----~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~ 558 (708)
T PF05804_consen 485 KELFVDFIGDLA----KIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL 558 (708)
T ss_pred HHHHHHHHHHHH----HHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 12344444333 33433322 357778888887743222 12 36889999998765432 244455555
Q ss_pred HHHHHHHhchhH-H--HhHhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHH
Q 000050 1682 LSEVLAALGTVY-F--EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVR 1754 (2622)
Q Consensus 1682 L~~i~~~~g~~~-l--~~llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR 1754 (2622)
+|.++..-.... + ..+++.++..++.. +.+.--..+.+|..+..+ +......+ ..+...++..+.|.+..||
T Consensus 559 ~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir 637 (708)
T PF05804_consen 559 LGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIR 637 (708)
T ss_pred HHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHH
Confidence 665553211111 1 35667777766543 455444555566665544 22111111 3477788999999999999
Q ss_pred HHHHHHHHHHHH
Q 000050 1755 DAALGAGHVLVE 1766 (2622)
Q Consensus 1755 ~~al~al~~lv~ 1766 (2622)
..|-.++..+.+
T Consensus 638 ~~~d~~Ldii~e 649 (708)
T PF05804_consen 638 KVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHHH
Confidence 999888876654
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.039 Score=71.94 Aligned_cols=297 Identities=18% Similarity=0.173 Sum_probs=170.3
Q ss_pred CchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCC
Q 000050 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2622)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2622)
+..++.|.+-..+.+...-+-..|+.++..+-...+ ..+.|.+.. |--.+.. .....|-+|+.+|+.++.+.|.
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-r~l~pavs~----Lq~flss-p~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-RELAPAVSV----LQLFLSS-PKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH-hhcchHHHH----HHHHhcC-cHHHHHHHHHHHHHHHHHhCCc
Confidence 344566666667777777778888888888876655 566663322 2222332 3566899999999999987765
Q ss_pred CccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCC
Q 000050 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVS 2385 (2622)
Q Consensus 2306 ~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~ 2385 (2622)
.+..--..|. ...+|.|+.+-.-|...|-+-. ...+++.++..+-.-..+-+.+-+....+|++.++...+..
T Consensus 316 ~v~~cN~elE----~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k-- 388 (865)
T KOG1078|consen 316 AVTVCNLDLE----SLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK-- 388 (865)
T ss_pred cccccchhHH----hhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH--
Confidence 4432222222 3456666555544444332211 11234545444444333323334444555565555543321
Q ss_pred hHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccc
Q 000050 2386 SAVKIRVYSVLKDLVYH-DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAI 2464 (2622)
Q Consensus 2386 ~~~~~~i~~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i 2464 (2622)
...+++.|...+.+ ..-+..+...+++-.+....|+. -...+.++...+.+... +.-....|+-+.++.|...
T Consensus 389 ---~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds-Ke~~L~~LCefIEDce~--~~i~~rILhlLG~EgP~a~ 462 (865)
T KOG1078|consen 389 ---HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS-KERGLEHLCEFIEDCEF--TQIAVRILHLLGKEGPKAP 462 (865)
T ss_pred ---HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHhccc--hHHHHHHHHHHhccCCCCC
Confidence 22344445444443 23345566677777777666642 22233333333333332 2224445666667777665
Q ss_pred cCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000050 2465 SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 2544 (2622)
Q Consensus 2465 ~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a 2544 (2622)
.-. ..+.++.....=.+.-+|.+|+.|+.++...+. .....+...+.++++|.+.+||..|...++.+-
T Consensus 463 ~Ps----kyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-------~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 NPS----KYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-------VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred Ccc----hhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-------CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 322 334444444444677899999999999873321 234567778888999999999999999999887
Q ss_pred hhCchhhh
Q 000050 2545 KANPSAIM 2552 (2622)
Q Consensus 2545 ~~~~~~v~ 2552 (2622)
........
T Consensus 532 ~~~~~l~~ 539 (865)
T KOG1078|consen 532 EKDDVLNQ 539 (865)
T ss_pred hhhhhhcc
Confidence 54443333
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00079 Score=82.25 Aligned_cols=198 Identities=19% Similarity=0.159 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchh--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2622)
Q Consensus 1336 ~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~ 1413 (2622)
..++..++..+...+....|.+|...|-.+...-+-.... ...++..+.+.+.+.++...|..|+..++.+++.=+..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 4567777777776666678888888777776543322222 12566677778887557888999999999999988888
Q ss_pred chhHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc-h
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-Q 1491 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p-~ 1491 (2622)
|.++....+..++.+-.|.++ .+|.++.+|+..+.+..+-..+..+-|.++. .+...-..++..+..+.+..+ +
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHH
Confidence 889999999999999999876 4566667788888888888888888887766 222333345556777776544 4
Q ss_pred hhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
.+...++++.|.+++..+.+...||+.|+.||..+...++-.++.+
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 5777899999999999999999999999999999999887444433
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.01 Score=73.39 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=104.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc-hh
Q 000050 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER-VL 1921 (2622)
Q Consensus 1844 ~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s-~~~~~R~~A~~~L~~lv~~~~~~-~l 1921 (2622)
.++..+.....|++..+|..|+..++..+...|...+.+.+.++..++..|-| .+.++...+..+|..+.+..... ..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 34444555678999999999999999999999999999999999999888775 45788888999999888776443 55
Q ss_pred hhHHHHHh---hhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHH---HHHhcCCcHHHHH
Q 000050 1922 PSIIPILS---RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI---RTALCDSILEVRE 1983 (2622)
Q Consensus 1922 ~~llp~L~---~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l---~~~L~d~d~~VR~ 1983 (2622)
+.++++-. ..+.+.+++.|.++...+|.+....++..-..|.+++...+ .-.+.|+++.|-.
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ 405 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR 405 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH
Confidence 66666543 45678899999999999998877666543333444444332 3356788887654
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0022 Score=82.12 Aligned_cols=242 Identities=18% Similarity=0.081 Sum_probs=146.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhH
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~ 1417 (2622)
.++.++..+...++..++..++.++... . ....++.+.+.+.+. +..+|.++..+|+.+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~-----~----~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~---------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ-----E----DALDLRSVLAVLQAG-PEGLCAGIQAALGWLG---------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc-----C----ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcCC----------
Confidence 4455555554444444544444443211 0 002356666677665 5667777777665422
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh
Q 000050 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2622)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L 1497 (2622)
-....+.+...+.++++.||.++..++...- ..-.+.+...|.+.+..+|..++.+||.+..
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---------- 176 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HDPGPALEAALTHEDALVRAAALRALGELPR---------- 176 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------
Confidence 1345566667777778888877765554421 1224456666677777888888888877643
Q ss_pred hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhH
Q 000050 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577 (2622)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i 1577 (2622)
...+|.|...+.|.++.||.+|..++..++. + .-++.+.....++....+..+..+... . .. ...
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~~~l~~~~~~~g~~~~~~l~~~lal--~---~~---~~a 241 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAWGVCRRFQVLEGGPHRQRLLVLLAV--A---GG---PDA 241 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHHHHHHHHHhccCccHHHHHHHHHHh--C---Cc---hhH
Confidence 3345566778999999999999999988864 1 223344443334433333222211110 0 11 146
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000050 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1578 ~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~ 1648 (2622)
++.|...+++. .+|..+..++|.+. ++ ..++.|.+.+.|+. +|..|..++..+..
T Consensus 242 ~~~L~~ll~d~--~vr~~a~~AlG~lg----~p--------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 242 QAWLRELLQAA--ATRREALRAVGLVG----DV--------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHhcCh--hhHHHHHHHHHHcC----Cc--------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 66777777765 48999999988763 32 36777888887753 88999998888765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0018 Score=83.02 Aligned_cols=235 Identities=25% Similarity=0.273 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcC
Q 000050 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2622)
Q Consensus 1351 ~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~ 1430 (2622)
++..|..+++.++.+- ....++.+...+.+. ++.+|..|..+++.+-. ...+|.++.++.
T Consensus 56 ~~~vr~~aa~~l~~~~---------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~ 115 (335)
T COG1413 56 DLLVRLSAAVALGELG---------SEEAVPLLRELLSDE-DPRVRDAAADALGELGD----------PEAVPPLVELLE 115 (335)
T ss_pred CHHHHHHHHHHHhhhc---------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC----------hhHHHHHHHHHH
Confidence 4556666665533221 113455555555555 46666666654433211 233444444444
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccC------------CChhhHHHHHHHHHHHHhhCchhhhhhh
Q 000050 1431 -DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED------------KAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2622)
Q Consensus 1431 -D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~------------~~w~~r~~a~~~L~~la~~~p~~l~~~L 1497 (2622)
|++..||..+..+++.+.. ...++.+++.+.+ ..|..|..+...++.+..
T Consensus 116 ~d~~~~vR~~aa~aL~~~~~-------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---------- 178 (335)
T COG1413 116 NDENEGVRAAAARALGKLGD-------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---------- 178 (335)
T ss_pred cCCcHhHHHHHHHHHHhcCc-------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----------
Confidence 5666666666666655521 1223334444433 225667777777776643
Q ss_pred hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhh
Q 000050 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLAL 1576 (2622)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~ 1576 (2622)
+...+.+.+.+.|....||.+|..+|+.++... ..+.+.+...+.|++..+| .++..++.. ....
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~---------~~~~ 244 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI---------GDEE 244 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc---------Ccch
Confidence 445667788899999999999999999997642 3456777777888887777 455555421 1223
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000050 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1577 i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~ 1648 (2622)
..+.+..++.+.++.++..+....+.. ........+...+.|..+.+|..+..+++....
T Consensus 245 ~~~~l~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 245 AVDALAKALEDEDVILALLAAAALGAL------------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHHhccchHHHHHHHHHhccc------------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 455666666666666666555544411 011234445555667777777777777776544
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0018 Score=82.78 Aligned_cols=239 Identities=18% Similarity=0.150 Sum_probs=154.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2622)
.++.+...+....+..++..+..++.. .-+ + ..+..++..+.|+++.||..+..+++.+ ....
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~~----~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i-------~~~~ 117 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---QED----A---LDLRSVLAVLQAGPEGLCAGIQAALGWL-------GGRQ 117 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---cCC----h---HHHHHHHHHhcCCCHHHHHHHHHHHhcC-------CchH
Confidence 455566666433356666555443322 111 1 2377888899999999999999998766 3345
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhH
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~i 1538 (2622)
..+.++..+.+.+..+|..++.+++... ..-.+.+...++|.++.||..|+.+|+.+... ..
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a 179 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-------LS 179 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cc
Confidence 6677888889999999998887777522 12245677788999999999999999998753 34
Q ss_pred HHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH
Q 000050 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2622)
Q Consensus 1539 lp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2622)
+|.|...+.|++..+| .|+..+... . . ....+.+.....+.....+..+..++... +.
T Consensus 180 ~~~L~~al~d~~~~VR~aA~~al~~l---G---~---~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~-------- 238 (410)
T TIGR02270 180 ESTLRLYLRDSDPEVRFAALEAGLLA---G---S---RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG-------- 238 (410)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHc---C---C---HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc--------
Confidence 5667777889999888 355555321 0 0 11223334333344444444444444432 22
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHH
Q 000050 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2622)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i 1685 (2622)
+..++.|..++.++. +|..++.++|.+.. +..++.|+..+.++. .+..+..++..|
T Consensus 239 ~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 239 PDAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred hhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 246777888888754 89999999887543 456777777765442 555555555544
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.9e-05 Score=81.85 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=92.2
Q ss_pred HhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhh
Q 000050 2478 KSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2622)
Q Consensus 2478 ~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2622)
++|..|++.++|++|.++++.++..+... ..+.+++..+..|+.| +.|+|.++..++..++..+|..+.++++.
T Consensus 33 FKh~vDDGLelRK~ayE~lytlLd~~~~~-----~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~ 106 (169)
T PF08623_consen 33 FKHKVDDGLELRKAAYECLYTLLDTCLSR-----IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDS 106 (169)
T ss_dssp CEEEEEGGGHHHHHHHHHHHHHHHSTCSS-----S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTT
T ss_pred ceeeecCcHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 46788899999999999999999987643 3578899999999999 99999999999999999999999999999
Q ss_pred HHHHHHhhhcC--Ccchh----------hchhHHHHHHH-hcccccchhHHHHHHHhh
Q 000050 2558 FGPALAECLKD--GSTPV----------RLAAERCAVHA-FQLTRGSEYIQGAQKFIT 2602 (2622)
Q Consensus 2558 l~p~l~~~~~~--~~~~v----------k~aae~a~~~~-~~~~~~~~~~~~~~~~l~ 2602 (2622)
+++++-+.+.. +..+| .+++.||+.++ ..+...+...+.+.+|++
T Consensus 107 l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~ 164 (169)
T PF08623_consen 107 LVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVE 164 (169)
T ss_dssp THHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHH
T ss_pred HHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 99999998743 34445 45566888888 666554322236666663
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.033 Score=64.71 Aligned_cols=252 Identities=16% Similarity=0.165 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHhc-cchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhH----HhHHHHHHHHhcCCc
Q 000050 1904 VAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPTIRTALCDSI 1978 (2622)
Q Consensus 1904 ~A~~~L~~lv~~~~-~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l----~~ll~~l~~~L~d~d 1978 (2622)
....||.++.+... ....|.+.|.|+.++..++..++.-+|..++.+++.+....+.+.+ ..+++.+..++...|
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 36778888877653 4477999999999999999999999999999999988765554433 578888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHH
Q 000050 1979 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALG 2058 (2622)
Q Consensus 1979 ~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~ 2058 (2622)
.+|..+|.+.+.++... +..++-+.| ++..++.-+..|..-+ .+..+.+.+.
T Consensus 142 deVAkAAiesikrialf--paaleaiFe-------SellDdlhlrnlaakc-------------------ndiaRvRVle 193 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALF--PAALEAIFE-------SELLDDLHLRNLAAKC-------------------NDIARVRVLE 193 (524)
T ss_pred HHHHHHHHHHHHHHHhc--HHHHHHhcc-------cccCChHHHhHHHhhh-------------------hhHHHHHHHH
Confidence 99999999988887532 111111111 1111111111111111 0112233333
Q ss_pred HHHHHhCCC--hhhh--HhhhHHHHHHhcCC-CCHHHHHHHHHHHHHhhhcc-Chhc--HHHHHHHHHhhc--CCCChhH
Q 000050 2059 ALAEVAGPG--LNFH--LGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVI-DEEG--VESLVSELLKGV--GDNQASI 2128 (2622)
Q Consensus 2059 sLa~~~g~~--l~~~--l~~il~~Ll~~l~~-~~~~vr~~a~~al~~l~~~~-~~~~--l~~ll~~Ll~~l--~d~~~~v 2128 (2622)
-+.+.+.-. ...+ -..++..|...+.. +|.-++...++..-.+...- +.+. ...+++.+...+ .|.+|.-
T Consensus 194 LIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 194 LIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 333322110 0111 13455556666654 55555554444433333211 1111 233444444444 2556766
Q ss_pred HHHHHHHHHHHHhhc------cccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 000050 2129 RRSSAYLIGYFYKNS------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183 (2622)
Q Consensus 2129 R~~A~~~L~~l~~~~------~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~ 2183 (2622)
+..+...++.|+.+. +......++..+...+.+++..|++...+|..+++.+...
T Consensus 274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 666777777776432 1222333455566667777778888999999999887554
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0052 Score=78.81 Aligned_cols=201 Identities=26% Similarity=0.312 Sum_probs=135.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2622)
...+.++..+.|++..||..+...++.+ +-+..+|.+...+.+.++.+|..+..+||.+.. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4567788889999999999988775544 557889999999999999999999998886642 45
Q ss_pred hHHHHhhhhc-CCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCC------------hhHH-HHHHHHHhccc
Q 000050 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2622)
Q Consensus 1500 ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~------------~~~r-~al~~L~~~~~ 1565 (2622)
.+|.+.+.+. |.+..||..|..+|+.+...- .+..++..+.++. ..+| .++..+...
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 5677777777 799999999999999987532 2444555555543 1233 233333210
Q ss_pred cccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000050 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2622)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~ 1645 (2622)
......+.+.+.+.+....+|..+...++.+.... ..+.+.+...+.++++.+|..++.++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234566667777777778888877777665421 2356677777778888888887777765
Q ss_pred HHhhhCCCCchhhHHHHHHHhhhcC
Q 000050 1646 LIRGMGEENFPDLVSWLLDALKSDN 1670 (2622)
Q Consensus 1646 L~~~~g~~~~~~ll~~Ll~~L~~~~ 1670 (2622)
+. .....+.+...+.+..
T Consensus 240 ~~-------~~~~~~~l~~~l~~~~ 257 (335)
T COG1413 240 IG-------DEEAVDALAKALEDED 257 (335)
T ss_pred cC-------cchhHHHHHHHHhccc
Confidence 32 2333444445554443
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.15 Score=66.83 Aligned_cols=314 Identities=15% Similarity=0.138 Sum_probs=161.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHH
Q 000050 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2622)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2622)
.+.+..+++ |..-|+..-.+++.++....+ +.-+...+.+-+...++..|-.|..++-.+....--+++.+++.
T Consensus 68 ~~tKlfQsk-d~~LRr~vYl~Ikels~ised-----viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~k 141 (865)
T KOG1078|consen 68 AITKLFQSK-DVSLRRMVYLAIKELSKISED-----VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMK 141 (865)
T ss_pred HHHHHHhhc-CHHHHHHHHHHHhhccccchh-----hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 345555655 565666555555555432221 22333444444555566677666666666544433344444443
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHh--hCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHH
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~il 1539 (2622)
.. +-+....+... .++.++.. ...........++.+ ...+.+..|+..|..-|.++.+.-+ -.+..++
T Consensus 142 qa---ivd~~~avSsa--alvss~hll~~~~~~vkrw~neiqe----a~~s~~~m~QyHalglLyqirk~dr-la~sklv 211 (865)
T KOG1078|consen 142 QA---IVDKNPAVSSA--ALVSSYHLLPISFDVVKRWANEVQE----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLV 211 (865)
T ss_pred hH---eeccccccchH--HHHHHhhhhcccHHHHHHHHHhhhh----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHH
Confidence 22 22222222211 12222221 122222222222222 2333345677777776666654211 0112233
Q ss_pred HHHHh-hcCCCChh---HHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc
Q 000050 1540 PTLLM-GLTDPNDH---TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2622)
Q Consensus 1540 p~Ll~-~l~d~~~~---~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~ 1615 (2622)
..+.. .+.+|-.. +|.+.+.+-. . ......+.|.+.+.+.++..-+-..|+..+..+... .+..+.|
T Consensus 212 ~~~~~~~~~~~~A~~~lir~~~~~l~~------~-~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p 282 (865)
T KOG1078|consen 212 QKFTRGSLKSPLAVCMLIRIASELLKE------N-QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP 282 (865)
T ss_pred HHHccccccchhHHHHHHHHHHHHhhh------c-ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch
Confidence 33222 12222211 1212121111 1 223345778888888888878888888888777653 2234444
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHH
Q 000050 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2622)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~ 1695 (2622)
.+..+.-.+..+.+.+|-.|.+.|..++-..+.... ..-..| +.+-++ ..|.-+..++..+.+.......+
T Consensus 283 ----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~cN~el-E~lItd---~NrsIat~AITtLLKTG~e~sv~ 353 (865)
T KOG1078|consen 283 ----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VCNLDL-ESLITD---SNRSIATLAITTLLKTGTESSVD 353 (865)
T ss_pred ----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-ccchhH-Hhhhcc---cccchhHHHHHHHHHhcchhHHH
Confidence 566777788899999999999999999886653310 000111 122222 24556666677777665555666
Q ss_pred hHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc
Q 000050 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2622)
Q Consensus 1696 ~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 1729 (2622)
.++..+-....+-+.+-+.....++..++..++.
T Consensus 354 rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 354 RLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred HHHHHHHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 6666666655555555565566666666666554
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.38 Score=65.05 Aligned_cols=166 Identities=19% Similarity=0.252 Sum_probs=117.1
Q ss_pred ccCCChhhHHHHHH-HHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhh
Q 000050 1467 LEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2622)
Q Consensus 1467 L~~~~w~~r~~a~~-~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~ 1545 (2622)
+.+++-+.|..|+. ++..|..+.. ++.++|.+++.....+.++++..--=|..+++.-+ .+.--.++.+.+-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhh
Confidence 55555555655555 4456665433 45566666666666688999998888888887543 2334567889999
Q ss_pred cCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhh-hHHH
Q 000050 1546 LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL-LLPE 1623 (2622)
Q Consensus 1546 l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~-ll~~ 1623 (2622)
++||++.+| .|+..+.... ....+..+++.+.+.++|+++.||+.|+.++..+.+. ++ ++ |.+. ....
T Consensus 101 l~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~-~l--~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DK-DL--YHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CH-hh--hhcccHHHH
Confidence 999999999 5677664311 2345567889999999999999999999999998875 21 11 2333 5666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000050 1624 VKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1624 L~~~L~d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
+..++.|.+|.|-..|..++..+...
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 77778899999988888887776553
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.6e-05 Score=67.69 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000050 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2622)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2622)
|++|.+|+.+||.++...+..+..+++.++|.|..+|+|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
|
... |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.086 Score=68.25 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC-
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK- 1933 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~- 1933 (2622)
|.+..-|+.-++.+...+.++|. +-.++++.+++++.|.++..-......+.+.+++.+. ....++..+.+.+.
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASIIEKLLETFPQ 444 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHhhhh
Confidence 34455677777777777777764 4556777788888999888777777788888877643 12223333333222
Q ss_pred CCChhhHHhHHHHHHHHHH
Q 000050 1934 DPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~ 1952 (2622)
-+..++-.++++.+|+-+.
T Consensus 445 irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 445 IRSSKICRGALWILGEYCE 463 (948)
T ss_pred hcccccchhHHHHHHHHHh
Confidence 1345566677777776543
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.36 Score=65.23 Aligned_cols=104 Identities=21% Similarity=0.296 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh
Q 000050 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2622)
Q Consensus 1883 l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~ 1962 (2622)
++.+++-+++...+.+.+.|...---|-...+.-+ .-.-..++.+.+-+.|+++.+|..|+..++.+ ...+.
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-------~~~el 124 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-------RVKEL 124 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-------ChHHH
Confidence 55566666666667777777655544444333322 22234456777788999999999999888865 23456
Q ss_pred HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000050 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2622)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2622)
++.+++.+++++.|+++.||..|+-|+..+++
T Consensus 125 ~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 125 LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999875
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0084 Score=74.22 Aligned_cols=232 Identities=19% Similarity=0.216 Sum_probs=152.4
Q ss_pred cchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccch----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCc
Q 000050 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2622)
Q Consensus 1296 ~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~----~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~ 1371 (2622)
+-+..++..+..-..||+..+|..++.||+.......++. +..++.++..|.+..+..+-..+..+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 5567888888888999999999999999988876644433 456777777777777778888999999988876554
Q ss_pred cchhhh--cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH----HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000050 1372 SSLKKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV----IQMLPLLLVAFSDQVVAVREAAECAAR 1445 (2622)
Q Consensus 1372 ~~l~~~--~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v----~~ilp~ll~~l~D~~~~VR~aa~~al~ 1445 (2622)
..+..+ ++...+.++..+. ++..|-+|..+|+.++...|+..+.++ .+-+..++--+.|+++.|-.|+...+.
T Consensus 334 ~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred cchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 444322 4555666777776 688999999999999998886544433 222334555678999999888877776
Q ss_pred HHHHhhcHHhHHhh--------------------------HHHHHhhc-------cCCChhh-HHHHHHHHHHHHhhCch
Q 000050 1446 AMMSQLSAQGVKLV--------------------------LPSLLKGL-------EDKAWRT-KQSSVQLLGAMAYCAPQ 1491 (2622)
Q Consensus 1446 ~i~~~l~~~~v~~i--------------------------lp~Ll~~L-------~~~~w~~-r~~a~~~L~~la~~~p~ 1491 (2622)
.+..++.-+....+ .|.++..+ -+..|.. |..+...-+........
T Consensus 413 ~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~ 492 (533)
T KOG2032|consen 413 TCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVR 492 (533)
T ss_pred hcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHH
Confidence 66554433322222 22222211 2346733 33333333333322221
Q ss_pred hhhhh--hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1492 QLSQC--LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1492 ~l~~~--L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
+.-.+ ...+...+..+..|+-++|+..|.+|++.+..
T Consensus 493 ~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 493 AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 11111 23445566667889999999999999987753
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0093 Score=78.00 Aligned_cols=220 Identities=18% Similarity=0.181 Sum_probs=151.0
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhH
Q 000050 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2622)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~ll 1777 (2622)
+...+..+.++...+|-+++..+..+.+.-...=.-....++...+..++|++.+|--.|.++...+++.|+++.++.+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 34455566788889999999999999874432212234569999999999999999999999998999988888666655
Q ss_pred HHHhhccCCC--chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhCh---hhHHHHHHHHHHh
Q 000050 1778 PAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR---DKRNEVLAALYMV 1852 (2622)
Q Consensus 1778 p~l~~~l~d~--~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~---e~~~~il~~L~~~ 1852 (2622)
......-... +.+++.+ ++++.++.. +|+ .+++.++.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa-------------------------------~Gel~~~y~~~Li~tfl~g 855 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVG--EAILKVAQA-------------------------------LGELVFKYKAVLINTFLSG 855 (982)
T ss_pred HHHHhcccCCCccceehHH--HHHHHHHHH-------------------------------hccHHHHHHHHHHHHHHHh
Confidence 5444322221 3344433 444444322 221 2333344444445
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhh-------hH
Q 000050 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLP-------SI 1924 (2622)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~-------~l 1924 (2622)
..|++..-|..++..+|.++..+...+..++.+++..++.... +.+.-+|..|+..+..+...+|...+| ..
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl 935 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDL 935 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 5688888899999999999987766666777777777776655 677889999999999999999977655 22
Q ss_pred HHHHhhhcC-CCChhhHHhHHHHHHHH
Q 000050 1925 IPILSRGLK-DPSASRRQGVCIGLSEV 1950 (2622)
Q Consensus 1925 lp~L~~~L~-d~~~~vR~~a~~~L~~l 1950 (2622)
...+....+ +++..+|..+|.++.++
T Consensus 936 ~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 936 DETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 333333333 34556777777777665
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0075 Score=77.43 Aligned_cols=307 Identities=17% Similarity=0.170 Sum_probs=188.9
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHH
Q 000050 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2622)
Q Consensus 2075 il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~i 2154 (2622)
+.+.+-+-|..+++-+|...+..+..+= +.+-+.+++|.+...+.+...-||+.|..++..+++.. .++.+-.|++
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckLk---E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeL 175 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKLK---EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPEL 175 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhcC---cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHH
Confidence 3455556678889999988877665441 34668999999999999999999999999999999873 4566667777
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccch---------------hhHHHHHHHHHhhchhhhhhhhcCCccccc
Q 000050 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ---------------PSYIKVIRDAISTSRDKERRKKKGGPILIP 2219 (2622)
Q Consensus 2155 l~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l---------------~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~ 2219 (2622)
+...+. .+.|+....+|+-.|-..-......++ -.+++.+++.-.
T Consensus 176 i~~fL~--~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~------------------ 235 (948)
T KOG1058|consen 176 IESFLL--TEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL------------------ 235 (948)
T ss_pred HHHHHH--hccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh------------------
Confidence 766543 456666777666443322111100111 011111111110
Q ss_pred cCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHH
Q 000050 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2622)
Q Consensus 2220 g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2622)
..|..-...+..+...|.+.++.++..|+.++-.+.. .+..+++....+ ++.+-+..+..+|.-.+.-|..+
T Consensus 236 --~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~alk~Aa~~~----i~l~~kesdnnvklIvldrl~~l 307 (948)
T KOG1058|consen 236 --ANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTALKAAASTY----IDLLVKESDNNVKLIVLDRLSEL 307 (948)
T ss_pred --cCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHHHHHHHHH----HHHHHhccCcchhhhhHHHHHHH
Confidence 0011122345555566666677777777666655542 235666665554 44444334556777777777766
Q ss_pred HHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcC-----C--HhHHHHHHHH
Q 000050 2300 IRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVS-----D--AGIREAILTA 2372 (2622)
Q Consensus 2300 ~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~-----d--~~vr~~~l~A 2372 (2622)
-.. -+..+..|.--+++.|+.++-+||..+..-.-.|+.. .++..++..|-..+..+ + ..-|...+++
T Consensus 308 ~~~----~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss-rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLikt 382 (948)
T KOG1058|consen 308 KAL----HEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS-RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKT 382 (948)
T ss_pred hhh----hHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh-ccHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 521 2234566777788899999999999887655555442 35666665555444221 1 3457777777
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000050 2373 LKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423 (2622)
Q Consensus 2373 L~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2622)
++.+..+ + +.+...+++.+.+.+.|.++.....+..-+......+|
T Consensus 383 ih~cav~----F-p~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 383 IHACAVK----F-PEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHhhc----C-hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 7766554 3 45778889999999998887655444444444555555
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0073 Score=74.20 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=140.1
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCch
Q 000050 2233 IFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL 2311 (2622)
Q Consensus 2233 ~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l 2311 (2622)
.+++++.+. ..+.++.|..-|-.+.-.-+-.--..|..+|..-++.++++..+...|..+|..|..+++.-+..+..+.
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst 369 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST 369 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence 334444433 3445555554333333222223346677888888899999977888999999999999998888888887
Q ss_pred HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHH
Q 000050 2312 PQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390 (2622)
Q Consensus 2312 ~~L~~~llk~L~d~~-~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~ 2390 (2622)
.--+..++.+-.|++ +.+|.++--|+-.+..+.|- .-+..+...+.+.|...-..+++.+..+++.......-...+
T Consensus 370 E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~--~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 370 EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL--QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch--hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 777778888888884 55555555566666665542 123333344444555555667778888888766544446678
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHH
Q 000050 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2622)
Q Consensus 2391 ~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2622)
.|.+.+.+..++.+..||..+..||-.+....+.+.+.|.++.+
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 88888888999999999999999999999999977888877643
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.30 E-value=1.2 Score=61.01 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChh-H--HhHHHHHHhhcCCC
Q 000050 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-I--ASLVPTLLMGLTDP 1549 (2622)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-i--~~ilp~Ll~~l~d~ 1549 (2622)
+.-+.++.+|.++++...-...-.-..+++.|+++|+..+.++.-.+...|..++-.-.|.. + ..+
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi----------- 332 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI----------- 332 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence 33456778889999876555544557899999999998899999999999988875433321 1 233
Q ss_pred ChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH--hhhHHHHHHH
Q 000050 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKV 1627 (2622)
Q Consensus 1550 ~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~ 1627 (2622)
+|.|.+.+...+.+.+..+..++.|++.- .+..+.+ ..++|.+..+
T Consensus 333 ----------------------------V~kL~kLl~s~~~~l~~~aLrlL~NLSfd----~~~R~~mV~~GlIPkLv~L 380 (708)
T PF05804_consen 333 ----------------------------VEKLLKLLPSENEDLVNVALRLLFNLSFD----PELRSQMVSLGLIPKLVEL 380 (708)
T ss_pred ----------------------------HHHHHHHhcCCCHHHHHHHHHHHHHhCcC----HHHHHHHHHCCCcHHHHHH
Confidence 44444444444555555666666665431 1122211 1367777788
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcC
Q 000050 1628 LVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2622)
Q Consensus 1628 L~d~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~ 1670 (2622)
+.++ ..|..+...|..+...-... ...+.+|.+++.+.+..
T Consensus 381 L~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~ 424 (708)
T PF05804_consen 381 LKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENS 424 (708)
T ss_pred hCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCC
Confidence 8764 45566666666665421111 23467888888776543
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0073 Score=69.10 Aligned_cols=110 Identities=24% Similarity=0.253 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000050 2242 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2622)
Q Consensus 2242 ~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~ 2321 (2622)
++.+|..+..++|+++...+ ..+.||++. +...|.|. ++.||..++.+|..|....-. .+-+++...++++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~----l~~~L~D~-~~~VR~~al~~Ls~Li~~d~i---k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPN----LYKCLRDE-DPLVRKTALLVLSHLILEDMI---KVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHH----HHHHHCCC-CHHHHHHHHHHHHHHHHcCce---eehhhhhHHHHHH
Confidence 36789999999999998876 566666544 46777775 889999999999999875322 2336676778899
Q ss_pred hCCCCHHHHHHHHHHHHHHHhc-cc-ChhhHHHHHHHhhhc
Q 000050 2322 LQDSTRTVRSSAALALGKLSAL-ST-RVDPLVGDLLSSLQV 2360 (2622)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~L~~~-~~-~~~~ll~~Ll~~l~~ 2360 (2622)
+.|++++||..|..++..+..- +| .+...+++++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999654 33 366778888887754
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.002 Score=71.33 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=84.0
Q ss_pred chhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHH---HHhc
Q 000050 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII---IRKG 2303 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L---~~~~ 2303 (2622)
....+|+|.+|+......-+-.|..++.++.+..+.+.+.|.+++++.|+.+.|+.+ +.++...+|.+|..| ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 357999999999999999999999999999999566889999999999999999987 889999999999999 6788
Q ss_pred CCCccCchHHHHHHHH
Q 000050 2304 GIALKPFLPQLQTTFI 2319 (2622)
Q Consensus 2304 ~~~l~p~l~~L~~~ll 2319 (2622)
|..+.||..||.+.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8999999999999875
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.23 Score=65.39 Aligned_cols=195 Identities=15% Similarity=0.103 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCcc---chhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~---~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~ 1413 (2622)
.-+.+|++.|..+.|......|...|..++.-.... .+....++|.|.+.++++.|+.....|+.|+.++++.+|+.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 355677777766545556666777666555322211 22233688999999999989999999999999999999976
Q ss_pred chhHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc
Q 000050 1414 FEPYVI-QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2622)
Q Consensus 1414 ~~~~v~-~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2622)
..-.+. +.+|.++..+. -.-.+|-+.+..|+..+...-+.... ..-+...+..|+==.-..++.|+.+..+++...+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 554443 47888777654 45568888999999888776555433 1222223333321122345667777777776555
Q ss_pred hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000050 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2622)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2622)
..-..+.-+.+|.|..+|+..+..+-+.++-|+..+++.+.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 44445566788999999998888999999999999998775
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.032 Score=73.24 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=155.8
Q ss_pred HhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHH
Q 000050 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2622)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2622)
....+.|+.+.+|.++...+..+++.-.+.. ......++..+...+.|.|+-|--+|.+++..+++.... .++|.
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~d 806 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPD 806 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHH
Confidence 3345678888899999999998887543222 234467888888999999999999999988888776443 44555
Q ss_pred HHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCC
Q 000050 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD 2087 (2622)
Q Consensus 2008 Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~ 2087 (2622)
+.+.-.+..... .+...-....|+..++...|+-+..|...++...+...++++
T Consensus 807 L~e~Y~s~k~k~--------------------------~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 807 LSEEYLSEKKKL--------------------------QTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHHhcccCC--------------------------CccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCch
Confidence 544322111000 000111234677778887888899999999999999999888
Q ss_pred HHHHHHHHHHHHHhhhccC---hhcHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHhhccccccccH----HHHHHHHH
Q 000050 2088 MDVQSLAKEAAETVTLVID---EEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYLVDEA----PNMISTLI 2159 (2622)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~---~~~l~~ll~~Ll~~l-~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~----~~il~~L~ 2159 (2622)
...|..++..++.++.... .+.+.++...++... .|++..+|++|+..+..+...++.++.+.+ -+....+.
T Consensus 861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 861 HEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 8889999999988877443 345666666666655 477899999999999999998888877643 34444444
Q ss_pred HHhc-CCChhHHHHHHHHHHHHH
Q 000050 2160 VLLS-DSDSTTVAAAWEALSRVV 2181 (2622)
Q Consensus 2160 ~~l~-d~d~~V~~~a~~aL~~l~ 2181 (2622)
.... +++..++-.+..++..+-
T Consensus 941 ~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHhcCchhHHHHHHHHHHHHHH
Confidence 4444 555666777776666553
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00048 Score=61.70 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000050 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2622)
Q Consensus 1393 ~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i 1447 (2622)
|.+|.+|+.+|+.+++..+..+.+|+.+++|.+..++.|+++.||.+|..+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6799999999999998888889999999999999999999999999999888753
|
... |
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=2.2 Score=57.21 Aligned_cols=265 Identities=17% Similarity=0.222 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCC-----hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhc-
Q 000050 1436 VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT- 1509 (2622)
Q Consensus 1436 VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~-----w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~- 1509 (2622)
-|+.-.+++-.+.+.+++.-...+...+-+.+.+.+ |..-..++..+..+++....... ..+|.+++..-
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~as 515 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccc
Confidence 455556666655555554444444444444454444 87777777788888765544433 33555555442
Q ss_pred ----CCCHHHHHHHHHHHHHHhhhcCC-h-hHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh
Q 000050 1510 ----DTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2622)
Q Consensus 1510 ----D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~ 1583 (2622)
-.++..-..+...+|.++..+++ | ++...+|.|++.+..+
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s---------------------------------- 561 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS---------------------------------- 561 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc----------------------------------
Confidence 23667777778888888776654 2 3344455554444322
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----Cchh
Q 000050 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPD 1657 (2622)
Q Consensus 1584 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~g~~----~~~~ 1657 (2622)
+.-..+...+..+|+. -+.++.||.+.++....+.+.. -.+..|....+++|-+.....++ |+..
T Consensus 562 -------k~s~q~i~tl~tlC~~--C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 562 -------KESEQAISTLKTLCET--CPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred -------hHHHHHHHHHHHHHHh--hhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 2222334447777874 4568999999999999988874 35678999999999999887743 4445
Q ss_pred hHHHHHHHhhhc----CC-h-HHHHHHH--HHHHHHHHHhchh-----------------------HHHhHhHHHHHhcc
Q 000050 1658 LVSWLLDALKSD----NS-N-VERSGAA--QGLSEVLAALGTV-----------------------YFEHILPDIIRNCS 1706 (2622)
Q Consensus 1658 ll~~Ll~~L~~~----~~-~-~~r~~a~--~~L~~i~~~~g~~-----------------------~l~~llp~l~~~l~ 1706 (2622)
++..++..++.- -. . ..+..+. .+++.+...+..+ .+.+++|.+-+.+.
T Consensus 633 lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s 712 (982)
T KOG2022|consen 633 LINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS 712 (982)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 555555444321 11 1 1222222 2344444433211 11233443333322
Q ss_pred --CCChhhHHHHHHHHHHhhhhhCcch-hhhHHhHHHHHHhhcC
Q 000050 1707 --HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1707 --~~~~~vR~~al~~l~~L~~~~g~~f-~p~l~~ii~~ll~~L~ 1747 (2622)
..+..+-++++..++.=....++.| .|+++.+.+.+.....
T Consensus 713 ~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 713 MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 1344555666655555455666778 8889998888887443
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0032 Score=67.03 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH-hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~-~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
+++|.++..+.+.++.+|..+..++..++...+.. .++ .++|.+++.+.+++.+++..++.+|+.++...+.....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 36788888899999999999999999988653222 233 88999999999999999999999999999876543333
Q ss_pred hh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000050 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2622)
.. ..+++.+.+.+++.+..+|+.++++|.+++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23 458899999999999999999999999886
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.031 Score=69.52 Aligned_cols=191 Identities=17% Similarity=0.174 Sum_probs=134.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhh-cChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcC--CCc
Q 000050 2231 LPIFLQGLISGSAELREQAALGLGELIEV-TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IAL 2307 (2622)
Q Consensus 2231 lp~ll~~L~~~~~~~r~~aa~~L~~l~~~-~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~--~~l 2307 (2622)
+...++.+.......|+.++..+..+... .-++.+......++..+.+.++.. ..+.+..++.+++.++-.+| ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 33445566666788999999888877743 334566677778888888888764 34667788888998888765 555
Q ss_pred cCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccc-Chhh------HHHHHHH--hhhc----------CCHhHH
Q 000050 2308 KPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALST-RVDP------LVGDLLS--SLQV----------SDAGIR 2366 (2622)
Q Consensus 2308 ~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~~~-~~~~------ll~~Ll~--~l~~----------~d~~vr 2366 (2622)
..++..+.+.+.+.+.|. +..+|..++.|||.+.-+.. ..+. .+..+.. ..+. +++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 567788888888888886 56788999999998744322 2222 2221111 1111 125689
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000050 2367 EAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCM 2422 (2622)
Q Consensus 2367 ~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~ 2422 (2622)
.+++.++.-++...+...........++.+...+++.+-+||.+|+++|+-+....
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999877653223556667788888999999999999999998876543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.3 Score=64.45 Aligned_cols=390 Identities=15% Similarity=0.206 Sum_probs=208.4
Q ss_pred HHHHhhcCCC-ChhHHHHHHHHHHHHHhhcccc-ccc-cHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhhcCccchh
Q 000050 2115 SELLKGVGDN-QASIRRSSAYLIGYFYKNSKLY-LVD-EAPNMISTLIVLLSD-SDSTTVAAAWEALSRVVASVPKEVQP 2190 (2622)
Q Consensus 2115 ~~Ll~~l~d~-~~~vR~~A~~~L~~l~~~~~~~-l~~-~~~~il~~L~~~l~d-~d~~V~~~a~~aL~~l~~~~~~~~l~ 2190 (2622)
..|++.+..+ |+..+..|+.=+..+......+ ++. -+..+++.|+.++++ .+.++...|+.||..++..+|...--
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 4444555443 5555555544444333222222 222 246788999999984 46899999999999999887753200
Q ss_pred hHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhcChhhhhhhh
Q 000050 2191 SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2622)
Q Consensus 2191 ~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~-~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2622)
.+. ...+|+|++.|.. .--++-++++.++..|....+...++
T Consensus 250 --------------------------vV~--------~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~--- 292 (1051)
T KOG0168|consen 250 --------------------------VVD--------EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ--- 292 (1051)
T ss_pred --------------------------eec--------ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh---
Confidence 000 0134555554443 23467778888888888776633332
Q ss_pred hhhhHHHHHhhc--CCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc-cc-
Q 000050 2270 IPITGPLIRIIG--DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-ST- 2345 (2622)
Q Consensus 2270 ~~i~~~Li~~l~--~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~-~~- 2345 (2622)
.|.|..+|. |-|+-.+...|+.+....|.++..+--.|+-.-.+++...|+..+...-..++.|+-+++.- ++
T Consensus 293 ---AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 293 ---AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 122222222 22466778889999999999988766667777888888899988888888888899888542 21
Q ss_pred --Chhh-----HHHHHHHhhhcCC----HhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCH----H----
Q 000050 2346 --RVDP-----LVGDLLSSLQVSD----AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDD----H---- 2406 (2622)
Q Consensus 2346 --~~~~-----ll~~Ll~~l~~~d----~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~----~---- 2406 (2622)
++++ ++....+.+..++ ..+....+..|..+...+....-.-+...|...+...+..... .
T Consensus 370 ~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~ 449 (1051)
T KOG0168|consen 370 PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHEL 449 (1051)
T ss_pred hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccc
Confidence 2222 3333333332221 2233333333333332222111112333444444444433110 0
Q ss_pred -HH--HHHHHHHHHHHhhc---CchH----HHHHHHHHHh--------hcC-CCCchhhHhHHHHHH-------------
Q 000050 2407 -VR--VSAASILGIMSQCM---EDGQ----LADLLQELLN--------LAS-SPSWAARHGSVLVFA------------- 2454 (2622)
Q Consensus 2407 -vr--~~aa~~Lg~L~~~~---~~~~----~~~~l~~ll~--------~~~-~~~~~~r~~~~~~L~------------- 2454 (2622)
.| +..-+.+..++..+ |.+. ..-++...++ |-. ...|. ....+..
T Consensus 450 l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~---~~~~~~~ri~~q~~~~~~t~ 526 (1051)
T KOG0168|consen 450 LSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWH---TYTNIDSRIIEQINEDTGTS 526 (1051)
T ss_pred cccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCcccccccc---ccchhhhhhhhhhccCcccc
Confidence 01 01111111122222 2110 0001111111 100 00111 0111111
Q ss_pred -------------HHHhhCCccccCChhHHHHHHHHHhhhcc-CChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHH--
Q 000050 2455 -------------TFLRHNPSAISMSPLFLSILDRLKSSLKD-EKFPLREASTKALGRLLLHQIQSGPANTTVVVDIL-- 2518 (2622)
Q Consensus 2455 -------------~~l~~~~~~i~~~~~~~~i~~~l~~~~~~-~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l-- 2518 (2622)
.++++.|+.+ ..+...+++.|++-..+ .++.+|.-+..|+.+++-.... +.+..+|
T Consensus 527 ~~~~dkl~~~~r~~~l~nqpel~--q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~s------eli~slLk~ 598 (1051)
T KOG0168|consen 527 RKQQDKLNGSAREGLLKNQPELL--QSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNS------ELIGSLLKN 598 (1051)
T ss_pred hhhhhhcCCchhhhhhhcCHHHH--HHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCH------HHHHHHHhc
Confidence 2233333332 24556677777775544 6899999999999998655321 2333332
Q ss_pred ---H-HHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH
Q 000050 2519 ---A-SVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 2555 (2622)
Q Consensus 2519 ---~-~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l 2555 (2622)
. .+...+..++..|---|+++...+.++-|+.+.+++
T Consensus 599 ~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F 639 (1051)
T KOG0168|consen 599 TNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSF 639 (1051)
T ss_pred chHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhH
Confidence 2 333346678888888999999999999999987755
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0022 Score=64.06 Aligned_cols=86 Identities=28% Similarity=0.426 Sum_probs=70.0
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1422 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1422 lp~ll~~l-~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
+|.++..+ +|+++.||..+..+++.+ +-...+|.+.+.+.+++|.+|..++..|+.+.. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46788888 899999999988888733 335778999999999999999999999998742 567
Q ss_pred HHHHhhhhcCC-CHHHHHHHHHHHH
Q 000050 1501 VPKLTEVLTDT-HPKVQSAGQTALQ 1524 (2622)
Q Consensus 1501 vp~L~~~L~D~-~~~VR~aA~~aL~ 1524 (2622)
++.|.+.+.|+ +..||..|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 78888888764 6678999999986
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.045 Score=62.94 Aligned_cols=244 Identities=18% Similarity=0.203 Sum_probs=132.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccC--CChhhHHHHHHHHHHHHhhCchhhhhhhhh
Q 000050 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2622)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2622)
+..+.+.+.|.+.-.......+++++ +...-+|.+.+.+.+ +..-+|+.+.++||++.. +.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~-------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM-------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PE 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh-------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hh
Confidence 44444555555444444444444443 334455666655543 445667777777776651 34
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000050 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2622)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2622)
+.+.+.+..+|+...||+.+.-|+.++-..-.-.......|.. . .||... ....-++
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~-S--vdPa~p--------------------~~~ssv~ 157 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYI-S--VDPAPP--------------------ANLSSVH 157 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccc-c--CCCCCc--------------------cccccHH
Confidence 4555556667777777777777776663221000000000000 0 122211 0000122
Q ss_pred HHHhhhcCCC-H-HHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q 000050 1580 IVHRGLRERS-A-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 1657 (2622)
Q Consensus 1580 ~L~~~l~d~~-~-~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ 1657 (2622)
.+...+.|.+ + -.|..+.-.+.++. . +.-+..+.+.+.+++.-.|..++-++|.+-. +.
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~g----~--------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ 218 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNIG----T--------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PA 218 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhccC----c--------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hh
Confidence 2222222221 1 22333433333321 1 2356677777888888999999999988754 34
Q ss_pred hHHHHHHHhhhc-CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcch
Q 000050 1658 LVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2622)
Q Consensus 1658 ll~~Ll~~L~~~-~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 1731 (2622)
-+|.|.+.|.+. +..-+|..++.+|+.++. ++.++.+.+.++++.+-+|+++..+|..+--.-++.|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 566666666543 234588899888887654 3445566777888899999999888877655545544
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=2.6 Score=55.77 Aligned_cols=360 Identities=18% Similarity=0.216 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2622)
Q Consensus 1335 ~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l-~~~~~~~~R~~al~al~~La~~~~~~ 1413 (2622)
..+.|+.|++....+.-...||.|+.||..+++.+...... ..+-+ +.+.+ .|-.|+..-.. ++..++....
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga-~Gmk~-li~vL~~D~~D~E~ik~---~LdTl~il~~-- 92 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA-QGMKP-LIQVLQRDYMDPEIIKY---ALDTLLILTS-- 92 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-cccHH-HHHHHhhccCCHHHHHH---HHHHHHHHHh--
Confidence 35678888888877766789999999999999865433221 12222 22333 33334432222 2223332221
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVVAVRE---AAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~---aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2622)
.|..+.|-+ .+.+....+++.+-. -+..+..++..++..+..+|..+++++.++..+-|
T Consensus 93 ----------------~dd~~~v~dds~qsdd~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 93 ----------------HDDSPEVMDDSTQSDDLGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred ----------------cCcchhhcccchhhhHHHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 121122211 111222222221110 13456667788888999999999999999999888
Q ss_pred hhhhhh---hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh----hHHhHHHHHHhhcCCC-----ChhHHHHHH
Q 000050 1491 QQLSQC---LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDP-----NDHTKYSLD 1558 (2622)
Q Consensus 1491 ~~l~~~---L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~ilp~Ll~~l~d~-----~~~~r~al~ 1558 (2622)
.+.... +|.-+..++.+|.|++..+|..+.--|..+.+..++- .++.++..|+..+... .-.+.+|+.
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ 234 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLI 234 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 766544 5778889999999999999999999999998764321 1245556666665422 123446765
Q ss_pred HHHhc--------ccc-ccCChhhhhhHHHHHHhhh-cCCCHHHHHHHH-----HHHHHhhhhcCCCCcc------cchH
Q 000050 1559 ILLQT--------TFV-NTVDAPSLALLVPIVHRGL-RERSAETKKKAA-----QIVGNMCSLVTEPKDM------IPYI 1617 (2622)
Q Consensus 1559 ~L~~~--------~~~-~~~~~~~l~~i~p~L~~~l-~d~~~~vr~~a~-----~~l~~l~~~~~~~~~l------~~~l 1617 (2622)
.+... .|. ..---|.+..++|...-+- ....|...+.+. +++..+..- +.+... .-.-
T Consensus 235 ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~s 313 (970)
T KOG0946|consen 235 LLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVS 313 (970)
T ss_pred HHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHH
Confidence 44321 111 1111123333333332221 112455544332 222222210 111110 0112
Q ss_pred hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC----------Cch----hhHHHHHHHhhhcCChHHHHHHHHH
Q 000050 1618 GLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE----------NFP----DLVSWLLDALKSDNSNVERSGAAQG 1681 (2622)
Q Consensus 1618 ~~ll~~L~~~L~d~--~~~vR~~a~~aL~~L~~~~g~~----------~~~----~ll~~Ll~~L~~~~~~~~r~~a~~~ 1681 (2622)
..++..|...+-++ ..+|+..++.+++.+++..... +++ .++-.++....+..+...|...+.+
T Consensus 314 s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~yc 393 (970)
T KOG0946|consen 314 SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYC 393 (970)
T ss_pred cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHH
Confidence 34677777777655 4578888888888888753211 122 2333344444444556778887777
Q ss_pred HHHHHHHhchhHHHhHhHHHHHhccCC-ChhhHHHHHHHHH
Q 000050 1682 LSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFK 1721 (2622)
Q Consensus 1682 L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~vR~~al~~l~ 1721 (2622)
+-.....- .+.-..++..++....+. +..+..|.+.+.+
T Consensus 394 f~s~l~dN-~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~ 433 (970)
T KOG0946|consen 394 FRSYLYDN-DDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVG 433 (970)
T ss_pred HHHHHhcc-hhhHHHHHHHHhhhhccccccchhhhhHHHHh
Confidence 65433211 111133444444444443 3356666555444
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.22 Score=65.20 Aligned_cols=291 Identities=12% Similarity=0.095 Sum_probs=165.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHH
Q 000050 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 2320 (2622)
Q Consensus 2241 ~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk 2320 (2622)
|+...+.-|+..|....+..+ ......+..++.+..|. +..||..|+..|..++...+ .|++.+..++.+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP-----~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFP-----DLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-G-----GGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence 578888999999999887665 22344455567777775 88899999999999987543 578999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhh---cCCHhHHHHHHHHHHHHHhhcCCCCC---hHHHHHHHH
Q 000050 2321 CLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ---VSDAGIREAILTALKGVLKHAGKSVS---SAVKIRVYS 2394 (2622)
Q Consensus 2321 ~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~---~~d~~vr~~~l~AL~~vi~~~g~~~~---~~~~~~i~~ 2394 (2622)
.|+..+...+..+-.+|-.+...+|. ..+..+...+. .+|..+|+.++..|++-+...+.... .+.-..|..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k--~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~ 181 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK--GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVD 181 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHH
Confidence 99988888888999999888776543 35566666665 56788999999999988877665543 355667888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHh---hcCchHHHHHHHHHHhhc------CCCCchhhHhHHHHHHHHHhhCCcccc
Q 000050 2395 VLKDLVYHDDDHVRVSAASILGIMSQ---CMEDGQLADLLQELLNLA------SSPSWAARHGSVLVFATFLRHNPSAIS 2465 (2622)
Q Consensus 2395 ~L~~~l~~~~~~vr~~aa~~Lg~L~~---~~~~~~~~~~l~~ll~~~------~~~~~~~r~~~~~~L~~~l~~~~~~i~ 2465 (2622)
.+...+.|-...--.....+|+.+-. ..+......+++.+.... ...+.......+.++...+......+-
T Consensus 182 ~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~ 261 (556)
T PF05918_consen 182 EIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVS 261 (556)
T ss_dssp HHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB-
T ss_pred HHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCC
Confidence 88888888655555566677777665 233333344444333211 111222222244455555444333332
Q ss_pred CChhHHHHHHHHHhhhc----cCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCC------CHHHHHH
Q 000050 2466 MSPLFLSILDRLKSSLK----DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD------SSEVRRR 2535 (2622)
Q Consensus 2466 ~~~~~~~i~~~l~~~~~----~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~------s~dvr~~ 2535 (2622)
. ..++.++++..- +=....+-.-+..+..+..+++..+ ....+..+...+...+... ....-.+
T Consensus 262 S----skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d--~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEc 335 (556)
T PF05918_consen 262 S----SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD--ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVEC 335 (556)
T ss_dssp -----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T--HHHHHHHHHHHHHTTS----------HHHHHH
T ss_pred h----HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHHHhCCCCCCCCcccchHhhH
Confidence 2 344555554433 2233455556666666666665321 1122333334443332221 1234567
Q ss_pred HHHHHHHHHhhCch
Q 000050 2536 ALSALKSVAKANPS 2549 (2622)
Q Consensus 2536 a~~~l~~~a~~~~~ 2549 (2622)
.++++..++++.|+
T Consensus 336 LL~afh~La~k~p~ 349 (556)
T PF05918_consen 336 LLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHHHTT-TH
T ss_pred HHHHHHHHhhhCcc
Confidence 88889999999886
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.042 Score=68.35 Aligned_cols=189 Identities=19% Similarity=0.184 Sum_probs=129.8
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHh--hCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC-----Chh
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-----NPE 1534 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-----~~~ 1534 (2622)
..++.+.++.-.+|..++..+..+.. ..++.+......++..+.+.++-...+-+..|+++++-++-.++ +..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 34445555556667777776655443 24566667778888889999987777777788888888876655 124
Q ss_pred HHhHHHHHHhhcCCCChh--HH-HHHHHHHhccccccCChhhhhhHHHHHH---hh--hc----------CCCHHHHHHH
Q 000050 1535 IASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVH---RG--LR----------ERSAETKKKA 1596 (2622)
Q Consensus 1535 i~~ilp~Ll~~l~d~~~~--~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~---~~--l~----------d~~~~vr~~a 1596 (2622)
+..+.|.|.+.+.|.+.. .| .|+.+|.-..|+...+.......+..+. .. .+ ..++.+...|
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 578889999998887643 44 4566665555655444433332222222 11 11 1135788899
Q ss_pred HHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000050 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2622)
Q Consensus 1597 ~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g 1651 (2622)
...++-+...+.. ..+..++...+|.|..+|..++.+||..|..+|+-+.+...
T Consensus 207 L~aW~lLlt~~~~-~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 207 LSAWALLLTTLPD-SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999988876543 34567778899999999999999999999999999988654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0052 Score=65.43 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=82.0
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhh-hhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHH
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2622)
.++|.+++.+.+++|..|..++.+|+.++...+........ .++|.+.+++.|++++|+..|+++|++++...+.. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 36788888889999999999999999999876554444444 88999999999999999999999999998643210 00
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 000050 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2622)
Q Consensus 1537 ~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~ 1604 (2622)
. +. -..+++.+.+.+.+.+.+++..++.++.+++
T Consensus 86 ~----------------------~~------------~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 I----------------------VL------------EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred H----------------------HH------------HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 0 00 0113455555566666778888888877765
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.093 Score=60.48 Aligned_cols=237 Identities=18% Similarity=0.208 Sum_probs=134.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCC--CChhhHHhHHHHHHHHHHhhChhhHHHhHH
Q 000050 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2622)
Q Consensus 1887 l~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d--~~~~vR~~a~~~L~~li~~~~~~~l~~~l~ 1964 (2622)
+..+.+...+.+...+...+.+||++.. ..-+|.+...+.| ..|-+|..+..+||.+.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~ 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------P 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------h
Confidence 4444445554444455555666655432 3455666665554 467888899888887631 3
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCch--hHHHHHHHHHHhhhccccccchhh
Q 000050 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILP 2042 (2622)
Q Consensus 1965 ~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~--~~aL~~L~~il~~~~~~ilp~Lip 2042 (2622)
.+++.+.+...|+-..|++....|+.++-...+........|+.- .++... ...+..++..+
T Consensus 100 ~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S---vdPa~p~~~ssv~~lr~~l------------- 163 (289)
T KOG0567|consen 100 ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS---VDPAPPANLSSVHELRAEL------------- 163 (289)
T ss_pred hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc---CCCCCccccccHHHHHHHH-------------
Confidence 445666666678888888887667776643221111111111100 011000 01111122111
Q ss_pred hhhcCCCch-HHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhc
Q 000050 2043 KLVHLPLSA-FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV 2121 (2622)
Q Consensus 2043 ~L~~~~~~~-~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l 2121 (2622)
.+..... .+-+++=+|... | -...+..+.+.+.+++.-.|..+..+++++-. +..++.+...|...
T Consensus 164 --ld~t~~l~~Ry~amF~LRn~-g------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s---~~ai~~L~k~L~d~- 230 (289)
T KOG0567|consen 164 --LDETKPLFERYRAMFYLRNI-G------TEEAINALIDGLADDSALFRHEVAFVFGQLQS---PAAIPSLIKVLLDE- 230 (289)
T ss_pred --HhcchhHHHHHhhhhHhhcc-C------cHHHHHHHHHhcccchHHHHHHHHHHHhhccc---hhhhHHHHHHHHhh-
Confidence 0000000 011222122111 1 13457788888888888889999888888753 22233333333322
Q ss_pred CCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000050 2122 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2622)
Q Consensus 2122 ~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~ 2181 (2622)
.+++.||..|+.+||.++. ++.+..|...++|+++-|++.+.-+|.-.-
T Consensus 231 -~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 231 -TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred -hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3669999999999999985 577888888999999999999888887654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.029 Score=64.18 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCC
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~ 1936 (2622)
++.||..++.+++.++...|..+.++++. +..+|.|+++.+|..|..+|..++..---.+.+.++..+...+.|++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~----l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPN----LYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHH----HHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 35799999999999999888766655554 55678999999999999999999876434456677677777889999
Q ss_pred hhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHH
Q 000050 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2622)
Q Consensus 1937 ~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l 1970 (2622)
+++|..|...+.++.....+..+...+.+++..+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999877655555544444444433
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.056 Score=64.84 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=106.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-h
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-G 1455 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~ 1455 (2622)
-++.+..+++..+++..++.++.+++..+.. + .-...+. ..++.+...+.++++.||..|..++..+....... .
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAF-P-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccC-h-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 4566777787777899999999988886532 1 1223333 46889999999999999999999998775554333 3
Q ss_pred HHhhHHHHHhhccCCCh--hhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1456 VKLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w--~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
++.+++.+.+...+..| ..+.+++.+|..|.-.... ...+...+|.++.++...+..+|..+.+.|..+++.
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 57788888876655544 6778899999988643221 222345567777888888889999999999998763
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.76 E-value=2.9 Score=53.25 Aligned_cols=175 Identities=21% Similarity=0.178 Sum_probs=114.2
Q ss_pred hhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000050 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1573 ~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
..+.++-.+.+++..++..||..+++++..+...+++-++ .....++..+.+.+-|..+.||..|..+|..+-+--+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3455667788999999999999999999998887654222 23445666677777799999999999999988764443
Q ss_pred CCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHH-HHHHHHHHhhhhhCcch
Q 000050 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQF 1731 (2622)
Q Consensus 1653 ~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~-~al~~l~~L~~~~g~~f 1731 (2622)
+ -..+...+...++++.+..+|+.+...+.. -....|.+++.+.+.+...|. -+..++..+......+.
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~v---------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNISV---------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHeee---------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 3 234445666778888888888766433221 123456677777666554443 33344444433322222
Q ss_pred hhhHHhHHHHHHhhcCCCChHHHHHHHHHHHH
Q 000050 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2622)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~ 1763 (2622)
.++ +. .+--++.|.+.+|+.++.+++..
T Consensus 236 ~kr---i~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 236 DKR---IL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred cce---eh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 333 22 45557888888999888777643
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.74 E-value=3.6 Score=53.94 Aligned_cols=228 Identities=17% Similarity=0.151 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHhhh-----chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHH
Q 000050 1753 VRDAALGAGHVLVEHYAT-----TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2622)
Q Consensus 1753 VR~~al~al~~lv~~~~~-----~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~ 1827 (2622)
+-+..++.+..++..++. +.++.++-.+.++.+.++-.+|.-+++++..++.... +
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-----------e-------- 118 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-----------E-------- 118 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-----------c--------
Confidence 334455566666665532 2345566778888888888999999999988753211 0
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000050 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2622)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~ 1907 (2622)
.+.+.++.+...+...+.|..+.||..|+-++..+-......--+....+...+ -+|+++++|..|..
T Consensus 119 ---------idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~li---qnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 119 ---------IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLI---QNDPSDEVRRAALS 186 (892)
T ss_pred ---------cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH---hcCCcHHHHHHHHH
Confidence 111234455566666778999999999999998886422221112222222111 25899999999887
Q ss_pred HHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHH
Q 000050 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGL 1987 (2622)
Q Consensus 1908 ~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~ 1987 (2622)
++.- . +.-+|.+.+.-+|-+...|.-+...+..=+. .... -.+.-+..+...+.|.+..|+.++..
T Consensus 187 nI~v-----d----nsTlp~IveRarDV~~anRrlvY~r~lpkid-~r~l----si~krv~LlewgLnDRe~sVk~A~~d 252 (892)
T KOG2025|consen 187 NISV-----D----NSTLPCIVERARDVSGANRRLVYERCLPKID-LRSL----SIDKRVLLLEWGLNDREFSVKGALVD 252 (892)
T ss_pred hhcc-----C----cccchhHHHHhhhhhHHHHHHHHHHhhhhhh-hhhh----hHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 7631 2 3334445555556555666554443322111 1111 12344556677889999999988777
Q ss_pred HHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHH
Q 000050 1988 AFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL 2029 (2622)
Q Consensus 1988 al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il 2029 (2622)
++..= . -.+.+.-++.+++.|.-+..++.+..++..++
T Consensus 253 ~il~~--W--l~~~dgni~ElL~~ldvsnss~vavk~lealf 290 (892)
T KOG2025|consen 253 AILSG--W--LRFSDGNILELLERLDVSNSSEVAVKALEALF 290 (892)
T ss_pred HHHHH--H--hhhccccHHHHHHHhccccchHHHHHHHHHHH
Confidence 65431 0 11234457788888876666555555555554
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.22 Score=60.21 Aligned_cols=238 Identities=16% Similarity=0.133 Sum_probs=147.6
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhcccc-ccc-cHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcC--ccchhhH
Q 000050 2117 LLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVD-EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP--KEVQPSY 2192 (2622)
Q Consensus 2117 Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~-l~~-~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~--~~~l~~l 2192 (2622)
|-..+.++++.+|..|..+|+.+....+.+ +.. .+.-++.-+...++ |......+..++..+.+... .+....+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCChhhHHHH
Confidence 445567788888888888888887766543 332 23334444444553 34445555777777763211 1111111
Q ss_pred HHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhh
Q 000050 2193 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI 2272 (2622)
Q Consensus 2193 v~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i 2272 (2622)
+. ....... ++ +-....|..+...+..+..... ..++..-..+
T Consensus 82 ~~---~l~~~~~-------------~q--------------------~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~f 124 (262)
T PF14500_consen 82 LR---SLFQNVD-------------VQ--------------------SLPQSTRYAVYQLLDSLLENHR-EALQSMGDDF 124 (262)
T ss_pred HH---HHHHhCC-------------hh--------------------hhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHH
Confidence 11 1111110 00 1123556777777777776543 3444333444
Q ss_pred hHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHh--------CCC----CHHHHHHHHHHHHHH
Q 000050 2273 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL--------QDS----TRTVRSSAALALGKL 2340 (2622)
Q Consensus 2273 ~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L--------~d~----~~~vR~~Aa~aLg~L 2340 (2622)
+..++..+.+..++..-..++..+..++...+ +.++..++..++.-.+ +|+ .++++.+-..||.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-- 200 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-- 200 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--
Confidence 44556666655578777788888888888776 3778888887776543 233 2455555555554
Q ss_pred HhcccCh-hhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 000050 2341 SALSTRV-DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399 (2622)
Q Consensus 2341 ~~~~~~~-~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~ 2399 (2622)
..+.+ +..+|.|++.+.++...+|..+++.|..++...|.....+|...||+.|...
T Consensus 201 --s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 201 --STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred --CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 23444 3568899999988888899999999999999998776678999999988654
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0085 Score=59.81 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=68.4
Q ss_pred HHHHHhhh-cCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000050 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2622)
Q Consensus 1578 ~p~L~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~ 1656 (2622)
+|.|.+.+ ++.++.+|..++.+++.+.. +..++.+.+.+.|+++.||..|+.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 35677777 78899999999999884422 3578899999999999999999999998742 5
Q ss_pred hhHHHHHHHhhhcCChHHHHHHHHHHH
Q 000050 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r~~a~~~L~ 1683 (2622)
+.++.|.+.+.++....+|..++.+||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 678888888887776667877777664
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=1.4 Score=51.86 Aligned_cols=169 Identities=15% Similarity=0.153 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhHH----HHHHHHHHHHcCCC
Q 000050 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYV----IQMLPLLLVAFSDQ 1432 (2622)
Q Consensus 1358 Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~-~~~~v----~~ilp~ll~~l~D~ 1432 (2622)
...+|-.+.+..-+..+.+ ++++-|+..+..+ +..++..++.-++++.+.+... ..... ..++|.++.|.+..
T Consensus 63 cVscLERLfkakegahlap-nlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAP-NLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhccchhhch-hhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 3444555554443333322 5777787777665 5778888999999999887732 22211 26899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHH-Hh-----hccC-CChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHH
Q 000050 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSL-LK-----GLED-KAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKL 1504 (2622)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~~~v~~ilp~L-l~-----~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L 1504 (2622)
+..|-++|.+.++.+.. .+.+...++|.- ++ .|.. -+--.|.-..+++-.+..-.|.....+ -..++..+
T Consensus 141 ddeVAkAAiesikrial--fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIAL--FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred cHHHHHHHHHHHHHHHh--cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 99999999999998843 233333333321 11 1110 011123334555555555455443322 13345545
Q ss_pred hhhhcC-CCHHHHHHHHHHHHHHhhhc
Q 000050 1505 TEVLTD-THPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1505 ~~~L~D-~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
..-++. .+.-|+..+..-...++..-
T Consensus 219 eaElkGteDtLVianciElvteLaete 245 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETE 245 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHh
Confidence 444544 45678888887777776543
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.019 Score=67.43 Aligned_cols=178 Identities=20% Similarity=0.238 Sum_probs=123.8
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh---hH
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EI 1535 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i 1535 (2622)
.+...+..|++++|..+..++..+..++.-.++.+...|..++..+++-+++....|-.+|+.+++.+.+.+.+. +.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456678899999999999999999887788888889999999999999999999999999999999887654 23
Q ss_pred HhHHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCccc
Q 000050 1536 ASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2622)
Q Consensus 1536 ~~ilp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2622)
+.++-.|+..-.+.+..+|+ +-++|.. .+... .-+.+++.|..++...++++|..++.+..+....++-+....
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~a--MV~~v---tp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVA--MVNHV---TPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHH--HHhcc---ChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 44444444444444455563 3333332 11111 223467777777888889999999887766555444323344
Q ss_pred chHhhhHHHHHHHhcCCCHHHHHHHHH
Q 000050 1615 PYIGLLLPEVKKVLVDPIPEVRSVAAR 1641 (2622)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~vR~~a~~ 1641 (2622)
+|...+.+.+.+-+.|.-|.+|+.|-.
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~ 270 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARF 270 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhH
Confidence 556667777777777777766655433
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.051 Score=67.54 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=141.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhc
Q 000050 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2622)
Q Consensus 1299 ~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~ 1378 (2622)
.++.+.+-+.+.+.+.-.-.+++-.++-++ .+.-..+.++.++..-.+.+.....|+-+.+++.+.-+.. . .
T Consensus 445 ~eiye~lKe~l~nD~a~~geAa~~gMGl~m--Lgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrq--e----~ 516 (926)
T COG5116 445 REIYEKLKELLKNDRALLGEAAVYGMGLLM--LGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQ--E----M 516 (926)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhhccceee--ecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhH--H----H
Confidence 446666666666655544444444443322 3334466777776654333333556677777776664432 1 2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~-l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2622)
.-+.+.+++.++ ++-.|.++++.++...-+-|+ . .++..++.. ..|.+++||++|..|++.++-.= .
T Consensus 517 add~I~ell~d~-ds~lRy~G~fs~alAy~GTgn--~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~ 584 (926)
T COG5116 517 ADDYINELLYDK-DSILRYNGVFSLALAYVGTGN--L----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----R 584 (926)
T ss_pred HHHHHHHHhcCc-hHHhhhccHHHHHHHHhcCCc--c----hhHhhhheeecccCchHHHHHHHHheeeeEecC-----c
Confidence 234566677776 788999998877765555543 1 334444443 78999999999999988763321 2
Q ss_pred hhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---Ch
Q 000050 1458 LVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NP 1533 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~ 1533 (2622)
..++..++.|.+ -+..+|.+..-+||-.+.+...+. ....|-.++.|++.-||..|+-+++-+.-... ||
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 355666666654 578899999999987665433322 23344456789999999999999988865543 35
Q ss_pred hHHhHHHHHHhhcCCC
Q 000050 1534 EIASLVPTLLMGLTDP 1549 (2622)
Q Consensus 1534 ~i~~ilp~Ll~~l~d~ 1549 (2622)
.+..+...+.+.+.|.
T Consensus 659 ~v~~I~k~f~~vI~~K 674 (926)
T COG5116 659 NVKRIIKKFNRVIVDK 674 (926)
T ss_pred hHHHHHHHHHHHHhhh
Confidence 5566666666666554
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.51 E-value=9 Score=55.67 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=110.8
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2622)
.+-+..++|.|...+.+++..+|..|...+|.++......+..-.+.++...+..+.|.+.+||-.+.+....+.-+.+.
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 45577889999999999999999999999999988766666677799999999999999999999999888877766442
Q ss_pred cchhhHHHHHHHHHhhchhhhhhhhcCCc---cccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhh----
Q 000050 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGP---ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEV---- 2259 (2622)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~~---~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~---- 2259 (2622)
-. ......+.-..... |...+.+.... ..+..|.+ ..+..++....+.+.+..+.+|.+|+..+..+-++
T Consensus 334 ~~-~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~ 410 (1266)
T KOG1525|consen 334 IA-KASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCL 410 (1266)
T ss_pred hh-hHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11111111111111 11111122211 11222221 12223666667788888999999999999998874
Q ss_pred --cChhhhhhhhhhhhHHHHHhhcC
Q 000050 2260 --TSEQSLKEFVIPITGPLIRIIGD 2282 (2622)
Q Consensus 2260 --~~~~~l~p~v~~i~~~Li~~l~~ 2282 (2622)
.+...+.+-+..|-.-|++.+..
T Consensus 411 ~~~~~k~~t~~~swIp~kLL~~~y~ 435 (1266)
T KOG1525|consen 411 RSAGGKEITPPFSWIPDKLLHLYYE 435 (1266)
T ss_pred hccCcccccccccccchhHHhhHhh
Confidence 11123344445555555555543
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=5.7 Score=52.07 Aligned_cols=425 Identities=16% Similarity=0.143 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHH------hHHhhHHHHH
Q 000050 1393 AKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLL 1464 (2622)
Q Consensus 1393 ~~~R~~al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~------~v~~ilp~Ll 1464 (2622)
.....+...+++.++.+-.+.+...+. ..+|.++..+.+++ ..+++++..+++.+.+.-+.. ..+.+++.+.
T Consensus 67 ~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s 146 (678)
T KOG1293|consen 67 TELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFS 146 (678)
T ss_pred hhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 334445566677777666655555554 56789999999988 899999999999998854222 2355555544
Q ss_pred hhcc-CCChhhHHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh-hH-HhHHH
Q 000050 1465 KGLE-DKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI-ASLVP 1540 (2622)
Q Consensus 1465 ~~L~-~~~w~~r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i-~~ilp 1540 (2622)
..+. +-+...+.. +.. .+.+...+ ++..-+-..+...+.-++...+..+|.+|..++..-...+.|+ +. ..++.
T Consensus 147 ~l~s~~lk~~~~l~-~~~-~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~ 224 (678)
T KOG1293|consen 147 LLYSIELKYISRLD-VSR-AAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLG 224 (678)
T ss_pred HHHhhhhhhhhhhh-hhh-hccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHH
Confidence 4333 111111110 000 11111111 1222122233334333444457889999999888644444332 21 11111
Q ss_pred HHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc-----
Q 000050 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP----- 1615 (2622)
Q Consensus 1541 ~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~----- 1615 (2622)
. +.|..-..| -.+.+...++....|..++.++..++.. +..++-.+
T Consensus 225 ~----L~d~~v~~r------------------------~~v~rL~k~~~~s~~l~sl~cl~~~~~~-s~~~d~l~~~~~~ 275 (678)
T KOG1293|consen 225 L----LKDKGVNIR------------------------CVVTRLLKDPDFSERLRSLECLVPYLRK-SFNYDPLPWWFIF 275 (678)
T ss_pred H----Hhccccchh------------------------hhhhhhhhCCCccHHHHHHHHHHHHHhc-cccccccccceee
Confidence 1 111110000 0223344555556666677777776654 21112111
Q ss_pred --hHhhhH--HHHHHHhcCCCHHHHHHHHH--HH-HHHHhhhCCC-C---chhhHHHHHHHh---hhcCChHHHHHHHHH
Q 000050 1616 --YIGLLL--PEVKKVLVDPIPEVRSVAAR--AI-GSLIRGMGEE-N---FPDLVSWLLDAL---KSDNSNVERSGAAQG 1681 (2622)
Q Consensus 1616 --~l~~ll--~~L~~~L~d~~~~vR~~a~~--aL-~~L~~~~g~~-~---~~~ll~~Ll~~L---~~~~~~~~r~~a~~~ 1681 (2622)
..+..+ -.....+.+|.+..-..+.. |+ ..++...... + .....+.++... +... ...|.-++..
T Consensus 276 ~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~-~~~~~i~l~e 354 (678)
T KOG1293|consen 276 FDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASD-EKYRLILLNE 354 (678)
T ss_pred ccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcc-hhhhHHHhhh
Confidence 111111 11222333443322111111 11 1122222211 1 112233333222 1111 1122211111
Q ss_pred ---HHHHHHHhchhHHHhHh-----HHHHHhccCCChhhHHHHHHHHHHhhhhh---CcchhhhHHhHHHHHHhhcCCCC
Q 000050 1682 ---LSEVLAALGTVYFEHIL-----PDIIRNCSHQRASVRDGYLTLFKYLPRSL---GVQFQNYLQQVLPAILDGLADEN 1750 (2622)
Q Consensus 1682 ---L~~i~~~~g~~~l~~ll-----p~l~~~l~~~~~~vR~~al~~l~~L~~~~---g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2622)
....+...|...-+++. ..++......+...+.+++.++..+.+.. ... +--.++..++++.+.|++
T Consensus 355 ~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~ 432 (678)
T KOG1293|consen 355 TLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPE 432 (678)
T ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcc
Confidence 11111122211111111 11222222346677888888877766543 232 223457888888889999
Q ss_pred hHHHHHHHHHHHHHHHHhhhch---h-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccH
Q 000050 1751 ESVRDAALGAGHVLVEHYATTS---L-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2622)
Q Consensus 1751 ~~VR~~al~al~~lv~~~~~~~---i-~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~ 1826 (2622)
..|..+++.++..++-.|++-. + .-.+..++..+.+.+..+|..++..+..+.+.. |+.
T Consensus 433 ~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~--------------de~--- 495 (678)
T KOG1293|consen 433 IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC--------------DEE--- 495 (678)
T ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--------------hHH---
Confidence 8999999999999888776531 1 225566777888888999999999988887641 110
Q ss_pred HHHHHHHHHHhChhhHHHHHH-HHHHhccCCCHHHHHHHHHHHHHHHhhChhh
Q 000050 1827 EAHGRAIIEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2622)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~il~-~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~ 1878 (2622)
....+.. ++-. .+....+|+.+.|.+.+.+++..+.-+..+.
T Consensus 496 --~k~~~~~--------ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 496 --EKFQLLA--------KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred --HHHHHHH--------HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 0011111 1111 1223358999999999999999998776544
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=7.4 Score=53.28 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=68.8
Q ss_pred HhccCCCHHHHHHHHHHHHHHH---hhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhh
Q 000050 1851 MVRSDVSLSVRQAALHVWKTIV---ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPS 1923 (2622)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~---~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~ 1923 (2622)
..+++.+..+|-.|++++..-. ...+..+-|.+...+|.++.++...++-.-..|+.|+..+....|+- ++..
T Consensus 810 ~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~d 889 (1014)
T KOG4524|consen 810 HLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLED 889 (1014)
T ss_pred HHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3468889999999999987533 34567788889999999999999999999999999999999988875 4678
Q ss_pred HHHHHhhhcCC
Q 000050 1924 IIPILSRGLKD 1934 (2622)
Q Consensus 1924 llp~L~~~L~d 1934 (2622)
++|.+...+.+
T Consensus 890 vlP~l~~~~~~ 900 (1014)
T KOG4524|consen 890 VLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHH
Confidence 88888765544
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=6.6 Score=52.29 Aligned_cols=303 Identities=16% Similarity=0.134 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-----CCCHHHH-HHHHHHHHHHHHHhccc------hhhhH
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-----SSSSERR-QVAGRALGELVRKLGER------VLPSI 1924 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-----s~~~~~R-~~A~~~L~~lv~~~~~~------~l~~l 1924 (2622)
...+|-+|-.....+..+.+..+.+++-..+....++.. +-+.-.+ -++..+.|.-.-.+.+. ....+
T Consensus 410 ey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~l 489 (978)
T KOG1993|consen 410 EYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEAL 489 (978)
T ss_pred eeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhh
Confidence 345788888888888776665444433333322233221 1111122 22233333222222211 23445
Q ss_pred HHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHh--Chhhh
Q 000050 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKSA--GMQAI 2001 (2622)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~~--g~~~~ 2001 (2622)
+|-+.. -.+...-.|..++..+|..+..-.+. +.-+.+...+...+.|. |.-||-.++.++..+.+.. .++.+
T Consensus 490 lpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~~---e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsF 565 (978)
T KOG1993|consen 490 LPELAN-DHGNSRIIRRRVAWILGQWVSVQQKL---ELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSF 565 (978)
T ss_pred CHHhhh-cccchhHHHHHHHHHHhhhhheechH---hHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhh
Confidence 555541 11223456788888888876633322 23345566677788887 7889999999999887753 34555
Q ss_pred hhhHHHHHHhc-------ccCCchhHHHHHHHHHHhhhccccccch------hhhhhcCCCch--HHH---HHHHHHHHH
Q 000050 2002 DEIVPTLLHAL-------EDDQTSDTALDGLKQILSVRTTAVLPHI------LPKLVHLPLSA--FNA---HALGALAEV 2063 (2622)
Q Consensus 2002 ~~ilp~Ll~~L-------~~~~~~~~aL~~L~~il~~~~~~ilp~L------ip~L~~~~~~~--~~~---~aL~sLa~~ 2063 (2622)
-+++|.+...+ +.-+++-..|..+..++...+..+-|.. +|.|=+..... -++ .++..+...
T Consensus 566 lp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~a 645 (978)
T KOG1993|consen 566 LPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNA 645 (978)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHH
Confidence 55555554433 2234455677777777766555555543 33332221111 122 344455556
Q ss_pred hCCChhhhHhhhHHHHHHhcCCC---CHHHHHHHHHHHHHhhhccCh--hcHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000050 2064 AGPGLNFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVIDE--EGVESLVSELLKGVGDNQASIRRSSAYLIGY 2138 (2622)
Q Consensus 2064 ~g~~l~~~l~~il~~Ll~~l~~~---~~~vr~~a~~al~~l~~~~~~--~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~ 2138 (2622)
.|..-.+..+-++|.+--...-+ +.-.-+.+.+-+...+.+... +.+-.+.|.+...+.-.....| .+...+..
T Consensus 646 lg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~s 724 (978)
T KOG1993|consen 646 LGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISS 724 (978)
T ss_pred hccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHH
Confidence 67654444444445444333222 223456666777777665532 4455666666666543323332 23333332
Q ss_pred H-HhhccccccccHHHHHHHHHHHhcC
Q 000050 2139 F-YKNSKLYLVDEAPNMISTLIVLLSD 2164 (2622)
Q Consensus 2139 l-~~~~~~~l~~~~~~il~~L~~~l~d 2164 (2622)
. .-..+.-+..|...+...+...++|
T Consensus 725 YilLd~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 725 YILLDNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222333455666777777776665
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.37 Score=60.30 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=96.7
Q ss_pred HHHHHHHHhcCCCccC--chHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHhccc-ChhhHHHHHHHhhhcCCHhHHHHH
Q 000050 2294 STLSIIIRKGGIALKP--FLPQLQTTFI-KCLQDSTRTVRSSAALALGKLSALST-RVDPLVGDLLSSLQVSDAGIREAI 2369 (2622)
Q Consensus 2294 ~~L~~L~~~~~~~l~p--~l~~L~~~ll-k~L~d~~~~vR~~Aa~aLg~L~~~~~-~~~~ll~~Ll~~l~~~d~~vr~~~ 2369 (2622)
.....++......+.+ .+..+...++ .++++++..+|..|.+|||..+-++. ....+++.+...++..+..+|..+
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344455544444444 3336555544 78999999999999999999877654 355678888888866689999999
Q ss_pred HHHHHHHHhhcCCCCChH--------HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000050 2370 LTALKGVLKHAGKSVSSA--------VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2622)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~--------~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2622)
++++-.++...|...-.. ....+...+.+.+.+.++.++..+++.+.+|...
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999999998888654322 2457888888899888999999999999997644
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=7.9 Score=52.25 Aligned_cols=138 Identities=13% Similarity=0.158 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHh-CCChhhhHhhhHHHHHHhcCC-CCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHH
Q 000050 2053 NAHALGALAEVA-GPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR 2130 (2622)
Q Consensus 2053 ~~~aL~sLa~~~-g~~l~~~l~~il~~Ll~~l~~-~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~ 2130 (2622)
++.++-.+++.+ .+ .......+|.+++.|.. +...+|....-+++.++.++. ..++..+|.+...++|+++-+|.
T Consensus 948 ra~~vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-am~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-AMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred HHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-HHHHHhhHHHHHHhcCchHHHHH
Confidence 445555555532 11 12334578899998854 446777776666665554331 23567889999999999999999
Q ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcc-chhhHHHHH
Q 000050 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE-VQPSYIKVI 2196 (2622)
Q Consensus 2131 ~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~-~l~~lv~~l 2196 (2622)
.++..|..+.+. ++..+-+.++-.++..+-|.++++|.-|-..++.+...-... ....+++.+
T Consensus 1025 qt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1025 QTIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred HHHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 999999988763 455566666655555566889999999999999988765443 333444443
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.21 E-value=7.1 Score=51.38 Aligned_cols=206 Identities=17% Similarity=0.163 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---hhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCch
Q 000050 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2622)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~---~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2622)
.+++..++-+++.+...++..||...+..+..++. ..++.-+..+...++..+.+....+|..|+.+|..+-....+
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 34677888999999999999999999999998887 334445688888888899999999999999999877532111
Q ss_pred hhhhhhhhhHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHH-HHHHhccccccC
Q 000050 1492 QLSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTV 1569 (2622)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al-~~L~~~~~~~~~ 1569 (2622)
. . -.++..+...+ +|++++||.+|..++..=. ...|.+.....|-+...|.++ ..+.. +. ..
T Consensus 160 e-e---~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn---------sTlp~IveRarDV~~anRrlvY~r~lp-ki--d~ 223 (892)
T KOG2025|consen 160 E-E---CPVVNLLKDLIQNDPSDEVRRAALSNISVDN---------STLPCIVERARDVSGANRRLVYERCLP-KI--DL 223 (892)
T ss_pred C-c---ccHHHHHHHHHhcCCcHHHHHHHHHhhccCc---------ccchhHHHHhhhhhHHHHHHHHHHhhh-hh--hh
Confidence 1 0 12333334444 6899999999987664322 234556666566665555322 22111 11 11
Q ss_pred ChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHH-hhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000050 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGN-MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2622)
Q Consensus 1570 ~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~-l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~ 1645 (2622)
..-+...-+-.+..|+.|++..+|.++.+.+.. ..+.. + ..++..|..+=.+...+|+-.+.+++=.
T Consensus 224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-d--------gni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-D--------GNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-c--------ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 112333455667789999999999988877643 22211 1 1244444444345566888888777766
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.24 Score=62.00 Aligned_cols=161 Identities=19% Similarity=0.246 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000050 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG-LADRNSAKRREGALLAFECLCEKLGRLF 1414 (2622)
Q Consensus 1336 ~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~-l~~~~~~~~R~~al~al~~La~~~~~~~ 1414 (2622)
+++.+.++..|..++|...|.+.+..++...-+.|... ++..+... +.|. |..+|.+|+.++|-+|-.-+
T Consensus 514 qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~-----vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~--- 584 (926)
T COG5116 514 QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLG-----VVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDR--- 584 (926)
T ss_pred HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcch-----hHhhhheeecccC-chHHHHHHHHheeeeEecCc---
Confidence 34556667777777788889988888876666555433 33444444 4555 78899999999888773322
Q ss_pred hhHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh
Q 000050 1415 EPYVIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2622)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2622)
..++..++.+.+ .++.||....-+++..+.......-..++..| +.+..-.+|++|+-+++.+.-.+..++
T Consensus 585 -----~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L---~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 585 -----DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEAL---MYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -----chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHH---hhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 345555556654 57899999888888877665554333333333 346667899999999998887777778
Q ss_pred hhhhhhhHHHHhhhhcCCCH
Q 000050 1494 SQCLPKIVPKLTEVLTDTHP 1513 (2622)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~ 1513 (2622)
.+....|...+.+++.|.|.
T Consensus 657 np~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred ChhHHHHHHHHHHHHhhhhH
Confidence 88888888888888888664
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=96.02 E-value=4.6 Score=54.35 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=64.3
Q ss_pred CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHHhhhcC-ChHHHHHHHHHHHHHHHH
Q 000050 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-~~~~ll~~Ll~~L~~~~-~~~~r~~a~~~L~~i~~~ 1688 (2622)
+.+...++..++.+...+.+++..||....+.+..+-..+... .+.-=+..|++..++.. +..+|.-+..-+..-...
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 4567778888888888899999999999999999998887753 22222445666666655 444554433333322333
Q ss_pred hchhHHHhHhHHHHHhccC
Q 000050 1689 LGTVYFEHILPDIIRNCSH 1707 (2622)
Q Consensus 1689 ~g~~~l~~llp~l~~~l~~ 1707 (2622)
++.+.-.+++|.+++.+..
T Consensus 95 l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 LDDEERRELLPSLLKGISK 113 (501)
T ss_pred CCHHHHHHHHHHHHHhhcc
Confidence 3344446788888888764
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.99 Score=54.75 Aligned_cols=236 Identities=17% Similarity=0.175 Sum_probs=127.9
Q ss_pred ccCCChhhHHHHHHHHHHhhhhhCcc-hhh-hHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH--hhhchhhhhHHHH
Q 000050 1705 CSHQRASVRDGYLTLFKYLPRSLGVQ-FQN-YLQQVLPAILDGLADENESVRDAALGAGHVLVEH--YATTSLPLLLPAV 1780 (2622)
Q Consensus 1705 l~~~~~~vR~~al~~l~~L~~~~g~~-f~p-~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~--~~~~~i~~llp~l 1780 (2622)
+.+.++.+|..++.+++.+...++.. +.. .+.-++.-....+.| ...+..+ +.++..+++. ++......++..+
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHHHH
Confidence 34455566666666666555555532 111 233344445555533 2333333 6666665532 2233333344444
Q ss_pred hhccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCH
Q 000050 1781 EDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSL 1858 (2622)
Q Consensus 1781 ~~~l~d--~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~ 1858 (2622)
.+...- -....|..+.+++..++.+.. .. ...+|.++...++.. +..+.++
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~-----------------------~~-l~~~~~~fv~~~i~~---~~gEkDP 138 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHR-----------------------EA-LQSMGDDFVYGFIQL---IDGEKDP 138 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhH-----------------------HH-HHhchhHHHHHHHHH---hccCCCH
Confidence 332221 223478888888888875421 01 122333332222221 1233344
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhh
Q 000050 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA--------SSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930 (2622)
Q Consensus 1859 ~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~--------s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~ 1930 (2622)
.---.+.+.+..+....+ +.++.+.++..+.-++- ++..-.|..-...|..+.. ..+.+.+..+|.+.+
T Consensus 139 RnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~~~p~Lle 215 (262)
T PF14500_consen 139 RNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPFAFPLLLE 215 (262)
T ss_pred HHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHHHHHHHHH
Confidence 444455556665655544 23444454444433321 2222234333344433332 123356889999999
Q ss_pred hcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHH
Q 000050 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2622)
Q Consensus 1931 ~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~ 1972 (2622)
.|.+..+.++..++..|...+...+...+.+|+..+...+..
T Consensus 216 KL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 216 KLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888764
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.31 Score=62.06 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=85.4
Q ss_pred CCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHhcc-----------
Q 000050 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLGR----------- 1412 (2622)
Q Consensus 1349 ~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-----~~~~~~~R~~al~al~~La~~~~~----------- 1412 (2622)
++....|++|...+..+++..+..... .++.++.+.++ ...||+.+++|+..+++++.....
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 333466777888888888776644432 34455555554 345899999999999999964321
Q ss_pred -cchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHH
Q 000050 1413 -LFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2622)
Q Consensus 1413 -~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~ 1481 (2622)
.+..++. +++|-+- .-.+..+-+|-.|...+...-..+++.....++|.++..|.+++.-++.-|+.+
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 1333333 4566655 334567889999999998888899998899999999999999887666555443
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.90 E-value=2.8 Score=55.45 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh
Q 000050 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2622)
Q Consensus 1672 ~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~ 1751 (2622)
...+.-+++-|......++. .-+..+..++..|.+.+..+|..++..|..+|..-++ |+..+...+.+.|.-++.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcccH
Confidence 44566677777766655432 2355677888899999999999998888888876544 788899999999998777
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH
Q 000050 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2622)
Q Consensus 1752 ~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~ 1805 (2622)
.....+-.++..++..-+...+..++..+... ...+..+|.-++..+..-+..
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhh
Confidence 77777777887777766655555555555421 123456888877777655443
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.013 Score=45.27 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.8
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
++|.+.++++|++++||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.75 E-value=9.4 Score=48.96 Aligned_cols=212 Identities=15% Similarity=0.137 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------ccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHH
Q 000050 1877 KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL------GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2622)
Q Consensus 1877 ~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~------~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~l 1950 (2622)
..|...+-.++..++.+=+.+.-..| ..+.+..++... |..+...++..+.+++.+++..||..+|+.|+.+
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~dR--il~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~ 118 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIPDR--ILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALL 118 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcHHH--HHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHH
Confidence 34555555556655555443333333 344555555522 2335667777788889999999999999999988
Q ss_pred HHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHh
Q 000050 1951 MASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILS 2030 (2622)
Q Consensus 1951 i~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~ 2030 (2622)
+...++ .-......++..+.+-+-|..+.||-.|..++..+++..+.+. ..+...|+..++.+..++..-.++..+.
T Consensus 119 ~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-n~~~n~l~~~vqnDPS~EVRr~allni~- 195 (885)
T COG5218 119 SDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-NRIVNLLKDIVQNDPSDEVRRLALLNIS- 195 (885)
T ss_pred HHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-HHHHHHHHHHHhcCcHHHHHHHHHHHee-
Confidence 776654 2223446677777777789999999999999999886555422 2344455666665544433333333322
Q ss_pred hhccccccchhhhhhcCCCch---HHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 000050 2031 VRTTAVLPHILPKLVHLPLSA---FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098 (2622)
Q Consensus 2031 ~~~~~ilp~Lip~L~~~~~~~---~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al 2098 (2622)
..+...|.++.+-.+..... +-++.+-.++.....+..++.- .+--.+.+.+..++.++..++
T Consensus 196 -vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~----l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 196 -VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL----LMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred -eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh----hhhhcchhhhhhHHHHHHHHH
Confidence 24455666666555433211 2234444444322223333322 122235555566666555444
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=9.8 Score=50.06 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=80.1
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhc----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc--
Q 000050 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG----VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-- 2146 (2622)
Q Consensus 2073 ~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~----l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~-- 2146 (2622)
..+..++++.+.+++..+...+..++..++..+++-. -...+..+.+.+.+.++.+|..+.+.+..+.=+....
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 4566777777788888899999999888887775421 3356778888889999999999999998874333222
Q ss_pred ccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 000050 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2622)
Q Consensus 2147 l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~ 2182 (2622)
+..+..--.+.+..+.+|+|..|++.++..|.+++-
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 222222223445556789999999999999888864
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.29 Score=58.78 Aligned_cols=193 Identities=15% Similarity=0.099 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh-CccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cc
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 1413 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~--~~ 1413 (2622)
+-++.++..|...+|...+..+..+++..+... ..+.+...+.++.+...+.++ ++.+|..|+.++..++.... ..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHH
Confidence 455677777776666677777777777654321 122233346677788888887 79999999999888875443 23
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-HHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchh
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~ 1492 (2622)
++.|+.+++..+... .-+..++.++..++..+.-.-. .+-+...+|.++..|.+++-.+|..++.+|..++.... .
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~-~ 167 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD-M 167 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH-H
Confidence 556666666655443 2355788787777777632111 12346778888888888888899999999999887522 1
Q ss_pred hhhhh-hhhHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcCCh
Q 000050 1493 LSQCL-PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP 1533 (2622)
Q Consensus 1493 l~~~L-~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~ 1533 (2622)
....+ .+..+.++.+++.. +.++--.+..-+.++.+.++.+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11111 23455666666653 5677777788788887776643
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=95.60 E-value=9.3 Score=51.51 Aligned_cols=393 Identities=19% Similarity=0.246 Sum_probs=190.1
Q ss_pred chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-hhHHhHHHHHHhhcCCCC--hhHH-HHHHHHHhccc
Q 000050 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTF 1565 (2622)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ilp~Ll~~l~d~~--~~~r-~al~~L~~~~~ 1565 (2622)
.+.+...+...+|.++.-+..+|..||....+.+..+-+.++. +.++==+..|++...+|+ ..+| .++--+ . .-
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi-~-~g 91 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYI-E-MG 91 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHH-H-Hh
Confidence 4567777888888888889999999999999999999888875 666544566777776666 3344 232111 1 12
Q ss_pred cccCChhhhhhHHHHHHhhhcCCCH---HHHHHHHHHHHHhhhhcCCCCcc---cchHhhhHHHHHHHhcCCCHHHHHHH
Q 000050 1566 VNTVDAPSLALLVPIVHRGLRERSA---ETKKKAAQIVGNMCSLVTEPKDM---IPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2622)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~l~d~~~---~vr~~a~~~l~~l~~~~~~~~~l---~~~l~~ll~~L~~~L~d~~~~vR~~a 1639 (2622)
....+...-..++|.+.+++..... .........+.-+++.....+.- .+.....-. ...+.+ .......
T Consensus 92 ~~Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~--~~~l~~--~~~~~~l 167 (501)
T PF13001_consen 92 FDRLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRD--SLGLSD--FCDDVFL 167 (501)
T ss_pred hhcCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHH--HHhhcc--hHHHHHc
Confidence 2344555566788888888864332 12122222222233332221110 000000000 000001 0000000
Q ss_pred HHHHHHHH-----h---hhC--CCCchhhHHHHHHHhhhcC-ChHHHHHHH---HHHHHHHHHhchhHHHhHhHHHHHhc
Q 000050 1640 ARAIGSLI-----R---GMG--EENFPDLVSWLLDALKSDN-SNVERSGAA---QGLSEVLAALGTVYFEHILPDIIRNC 1705 (2622)
Q Consensus 1640 ~~aL~~L~-----~---~~g--~~~~~~ll~~Ll~~L~~~~-~~~~r~~a~---~~L~~i~~~~g~~~l~~llp~l~~~l 1705 (2622)
+.-.+.+. . .-| ....+.+-..-.+...... ....+.... .++-+++...... -.+.++.++-..
T Consensus 168 ~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~-d~~~~~~~liAs 246 (501)
T PF13001_consen 168 APWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFP-DEERFPPLLIAS 246 (501)
T ss_pred chhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCC-cHhHHhheeeEE
Confidence 00001100 0 000 0001111110001111110 000111111 1111222111110 123444444445
Q ss_pred cCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHh-hcC------CCChHHHHHHHHHHHHHHHH-hhhchhhhhH
Q 000050 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLA------DENESVRDAALGAGHVLVEH-YATTSLPLLL 1777 (2622)
Q Consensus 1706 ~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~-~L~------d~~~~VR~~al~al~~lv~~-~~~~~i~~ll 1777 (2622)
.+++..|...+-..+..+...+.+ .+.+..++...+. ++. --...+|...+.-+ .+. .+....+..+
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~ed--~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~~Aa~~~~~~~ 321 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSLED--PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSVIAATSFPNIL 321 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhHHHHhCCccHH
Confidence 667777877777777777655443 1233333443331 100 11233444433333 222 1222344566
Q ss_pred HHHhhccCCC--chHHHHHHHHHH---HHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHH--
Q 000050 1778 PAVEDGIFND--NWRIRQSSVELL---GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-- 1850 (2622)
Q Consensus 1778 p~l~~~l~d~--~~rvR~~a~~ll---~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~-- 1850 (2622)
.-+..++.+. +.|.|..+++.+ ...+.+++ ..+++.++.--+.+.++.+-
T Consensus 322 ~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~-----------------------~~~l~~l~~~i~~~g~p~~~~~ 378 (501)
T PF13001_consen 322 QIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS-----------------------PQILKLLRPVILSQGWPLIQDS 378 (501)
T ss_pred HHHhccccCCccccccchhcchhhhcchHHhhhcC-----------------------HHHHHHHHHHHHhcCccccccc
Confidence 6667788777 778888888877 44433321 11222222211112222220
Q ss_pred --HhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000050 1851 --MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2622)
Q Consensus 1851 --~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~ 1918 (2622)
......+...|..+.+++|.++...|..+..-+ .++..+++.+.+...++|...-.||+.+......
T Consensus 379 ~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 379 SSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred cccCCCcccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 001234678999999999999999987663332 3556667777888999999999999999877643
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.62 Score=58.38 Aligned_cols=151 Identities=21% Similarity=0.176 Sum_probs=98.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChh----
Q 000050 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---- 2469 (2622)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~---- 2469 (2622)
.++...+.+.+..+|+.+.+|+|-.+.... +...+.+.-+......++...+..+..++.-++..++...+....
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 445567788899999999999999887665 355555555544443445555666666777666665555443222
Q ss_pred ---HHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcC-CCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000050 2470 ---FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2470 ---~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~-~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~ 2545 (2622)
...+.+.+.+.+.+.++.++..+++++.+++....-.+ | ..+..++-.....-..++...|+.--+-+...+.
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~---~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPP---KVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 35688888999999999999999999999988864322 2 2333333333334334445666666666666665
Q ss_pred hCc
Q 000050 2546 ANP 2548 (2622)
Q Consensus 2546 ~~~ 2548 (2622)
.++
T Consensus 186 s~~ 188 (298)
T PF12719_consen 186 SSP 188 (298)
T ss_pred CCH
Confidence 554
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.50 E-value=23 Score=51.74 Aligned_cols=236 Identities=16% Similarity=0.165 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhH
Q 000050 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 1475 (2622)
Q Consensus 1396 R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r 1475 (2622)
+.+|...-..+.+.+++..++.+.+.+...+..-......++..-.+.+..+. ...++.+-.++|.|...|.+++-.+|
T Consensus 198 ~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~~vip~l~~eL~se~~~~R 276 (1266)
T KOG1525|consen 198 IKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLLAVIPQLEFELLSEQEEVR 276 (1266)
T ss_pred cHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcchHHHH
Confidence 33444444455555665566666554443322211111222222222222221 22344567788999999999999999
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHh---HHHHHHhhcCCCChh
Q 000050 1476 QSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS---LVPTLLMGLTDPNDH 1552 (2622)
Q Consensus 1476 ~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~---ilp~Ll~~l~d~~~~ 1552 (2622)
..|+.++|.|......++....+.++...++-+.|.++.||-++++...++.-. +|.+.. +.-.+.....|++..
T Consensus 277 l~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~~~~~~~~~~~~~l~~~~~D~~~r 354 (1266)
T KOG1525|consen 277 LKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN--NPSIAKASTILLALRERDLDEDVR 354 (1266)
T ss_pred HHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--CchhhhHHHHHHHHHhhcCChhhh
Confidence 999999999988766677778899999999999999999999999988877543 554422 222233344455444
Q ss_pred HHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh-c----CCCCcccchHhhhHHHHHHH
Q 000050 1553 TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V----TEPKDMIPYIGLLLPEVKKV 1627 (2622)
Q Consensus 1553 ~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~-~----~~~~~l~~~l~~ll~~L~~~ 1627 (2622)
+|. ..++...-+....-...+.++..+...+.|+-|+||..|..-+..+... + ...+...+-...+-..+..+
T Consensus 355 ir~--~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~ 432 (1266)
T KOG1525|consen 355 VRT--QVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHL 432 (1266)
T ss_pred hee--eEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhh
Confidence 441 0000000000000011122566667778899999999999998887763 1 11133333333344444444
Q ss_pred hcCCCHHHH
Q 000050 1628 LVDPIPEVR 1636 (2622)
Q Consensus 1628 L~d~~~~vR 1636 (2622)
+-..+.+.|
T Consensus 433 ~y~~~~~~r 441 (1266)
T KOG1525|consen 433 YYENDLDDR 441 (1266)
T ss_pred HhhccccHH
Confidence 444444555
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.6 Score=55.16 Aligned_cols=298 Identities=16% Similarity=0.251 Sum_probs=138.4
Q ss_pred CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhh----hcCChHHHHHHHHHHH
Q 000050 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALK----SDNSNVERSGAAQGLS 1683 (2622)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~----~~~~~~~r~~a~~~L~ 1683 (2622)
.++.|+...++..|...+..+...--+...+|+-.+....+++ +...+++.|...+. +..++.--...+++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 5788999999999999887543222345667777776666655 34455555555442 3333323345677777
Q ss_pred HHHHHhchh------HH-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHH
Q 000050 1684 EVLAALGTV------YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756 (2622)
Q Consensus 1684 ~i~~~~g~~------~l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~ 1756 (2622)
.+++..... .+ +.++|.+...++..- .+|.||+=+++..++..-. ...
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV-------------------~EF~PYvfQIla~Lle~~~--~~~---- 152 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQEILQQDV-------------------QEFIPYVFQILAQLLELRP--SSP---- 152 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHHHHHTT--------------------TTTHHHHHHHHHHHHHHSS----S----
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHcCC--CCC----
Confidence 777654432 12 233444444333332 3455555555554444432 000
Q ss_pred HHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHH---HHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHH
Q 000050 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI---RQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2622)
Q Consensus 1757 al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rv---R~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l 1833 (2622)
.++ ....++|.+... .-|.- --+.+.++..++.+-+..- . ....+
T Consensus 153 -----------~p~-~y~~L~~~Ll~p---~lWe~~gniPalvrLL~a~i~k~~~~i----~-------------~~~~l 200 (435)
T PF03378_consen 153 -----------LPD-AYKQLFPPLLSP---ALWERRGNIPALVRLLQAYIKKDPSFI----V-------------ANNQL 200 (435)
T ss_dssp -------------T-TTGGGHHHHTSG---GGGGSTTTHHHHHHHHHHHHHHHGGG---------------------S-C
T ss_pred -----------CcH-HHHHHHHHHcCc---chhccCCCcCcHHHHHHHHHHhCchhh----c-------------chhhH
Confidence 000 111122322211 12221 1233345555554422110 0 00011
Q ss_pred HHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 000050 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGE 1911 (2622)
Q Consensus 1834 ~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~-~l~~~l~~ll~~L~~~L~s-~~~~~R~~A~~~L~~ 1911 (2622)
...+| ++..+...... -..+.+.+..++.+.|. .+.+|++.++..++.++.+ +...-...-+..++-
T Consensus 201 ~~iLg------vFQkLi~sk~~-----D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~ 269 (435)
T PF03378_consen 201 EPILG------VFQKLIASKAN-----DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSL 269 (435)
T ss_dssp HHHHH------HHHHHHT-TTC-----HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHCCCCc-----chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 11222 12222211111 14578899999998885 6899999999999999984 333333333334444
Q ss_pred HHHHhccch--------hhhHHHHHh-----hhcCC-CChhhHHhHHHHHHHHHHhhCh--hhHHHhHHhHHHHHHHHhc
Q 000050 1912 LVRKLGERV--------LPSIIPILS-----RGLKD-PSASRRQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALC 1975 (2622)
Q Consensus 1912 lv~~~~~~~--------l~~llp~L~-----~~L~d-~~~~vR~~a~~~L~~li~~~~~--~~l~~~l~~ll~~l~~~L~ 1975 (2622)
++-+.|... .+.+...+. ..++. ..+.-|.-++.++..++..... ......+..+++.+...+.
T Consensus 270 ~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~ 349 (435)
T PF03378_consen 270 FAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLE 349 (435)
T ss_dssp HHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHc
Confidence 443334321 121111111 11221 2345577777888887754321 1122345555556655554
Q ss_pred C
Q 000050 1976 D 1976 (2622)
Q Consensus 1976 d 1976 (2622)
.
T Consensus 350 ~ 350 (435)
T PF03378_consen 350 R 350 (435)
T ss_dssp T
T ss_pred C
Confidence 3
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=4.5 Score=61.03 Aligned_cols=299 Identities=12% Similarity=0.094 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHHHhcCCCccCchHHHHHH----HHHHhCCCCHHHHHHHHHHHHHHHh-ccc-------Ch-hhHHHHH
Q 000050 2288 VKSAILSTLSIIIRKGGIALKPFLPQLQTT----FIKCLQDSTRTVRSSAALALGKLSA-LST-------RV-DPLVGDL 2354 (2622)
Q Consensus 2288 vk~~al~~L~~L~~~~~~~l~p~l~~L~~~----llk~L~d~~~~vR~~Aa~aLg~L~~-~~~-------~~-~~ll~~L 2354 (2622)
-|...+.-|.+++..--..++-..+.++.. |.+.-.+++..++.-|...|..++. +-. ++ ..++..+
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 356666666666553333344344554444 4444445577888888888888733 211 11 2456666
Q ss_pred HHhhh-cCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh----cC---chH
Q 000050 2355 LSSLQ-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC----ME---DGQ 2426 (2622)
Q Consensus 2355 l~~l~-~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~----~~---~~~ 2426 (2622)
...++ ..+.++|+.+++++..++...+.++. .-.+.|+..+.....++++.+-..+-+++..+... ++ .+.
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIk-SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK-SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh-cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 65553 45679999999999999988777662 23455666665555666777666677766655432 22 133
Q ss_pred HHHHHHHHHhhcCCCC-chhhHhHHHHHHHH---HhhCC------------------------cc---ccC----ChhHH
Q 000050 2427 LADLLQELLNLASSPS-WAARHGSVLVFATF---LRHNP------------------------SA---ISM----SPLFL 2471 (2622)
Q Consensus 2427 ~~~~l~~ll~~~~~~~-~~~r~~~~~~L~~~---l~~~~------------------------~~---i~~----~~~~~ 2471 (2622)
+..++.-+.+...... ...-..++..|..+ +...+ +. +.. ..+|-
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 4444433322211111 10111122222211 00000 00 000 13566
Q ss_pred HHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhc-CCCCchhhHh-HHHHHHhhcC------------------CCC--
Q 000050 2472 SILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-GPANTTVVVD-ILASVVSALH------------------DDS-- 2529 (2622)
Q Consensus 2472 ~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~-~~~~~~~l~~-~l~~l~~~l~------------------d~s-- 2529 (2622)
.++..+.+.+.+++++||..|+..|-.++...+.. .++++..+.. +|-+++..++ +.+
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGEL 1426 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccch
Confidence 67777777788899999999999999988777654 4434333222 3333332211 001
Q ss_pred ------HHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHHhcc
Q 000050 2530 ------SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587 (2622)
Q Consensus 2530 ------~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~ 2587 (2622)
.+.-..|+..+..+-.+..+.+.+.|+.++..+..|+...|..+=..+-.|+..+..-
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 1445556666666655666778889999999999999999998877777777776543
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.38 Score=61.35 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhcc-----c---------
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGE-----R--------- 1919 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~---s~~~~~R~~A~~~L~~lv~~~~~-----~--------- 1919 (2622)
...-|.+|.+.+..++...++.+.+.+...+..++.... +.++..+..|+..++.+..+... .
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 356899999999999988777666666555555544322 45788889999999988765421 1
Q ss_pred --hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHH
Q 000050 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2622)
Q Consensus 1920 --~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al 1989 (2622)
+...++|-|. .-.+..|-+|..||..+...-...+ .+.+..++|.+..+|.+++.-|+..|+.|+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1234555555 2224567788888887776533333 346688999999999999999999988764
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.22 Score=65.24 Aligned_cols=188 Identities=15% Similarity=0.224 Sum_probs=135.7
Q ss_pred hhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000050 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1573 ~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
....++|.|.+.+...+..+|....+-+..+...++. ..+-+++.|.+...+.|.++.+|+.+.+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 4556899999999999999999998888888776643 224567899999999999999999999999999999998
Q ss_pred CCc-hhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHh-HHHHHhccCCChhhHHHHHHHHHHhhhhhCcc
Q 000050 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL-PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2622)
Q Consensus 1653 ~~~-~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~ll-p~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 1730 (2622)
..+ .+++..+. .++.|+....|.....+++.+...+....-..++ -...+.+.++-..-|.++...+......+..
T Consensus 403 ~~Ln~Ellr~~a-r~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYLA-RLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHHH-hhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 743 45555553 3444555557777777777776654333222222 2333445666667777777777666554443
Q ss_pred hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000050 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~ 1767 (2622)
...-.+|+|.+....-|++..||+.|..+++.+...
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 233456888888888899999999999888876543
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.19 Score=65.86 Aligned_cols=243 Identities=18% Similarity=0.251 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHHHHHhchhHH-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCC
Q 000050 1672 NVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2622)
Q Consensus 1672 ~~~r~~a~~~L~~i~~~~g~~~l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2622)
..+|...++.+.+.+..+..+.. ..++|.++..+.-.+ ... .++..+-.+...+.. .+|-..++|.+++.++-.+
T Consensus 268 ~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-a~~-~~ltpl~k~~k~ld~--~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 268 VEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-AAS-DFLTPLFKLGKDLDE--EEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-cch-hhhhHHHHhhhhccc--cccccchhhhHHHHhcCcc
Confidence 44677788888887777777654 566777776654333 111 111122222222222 3477779999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhchh-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHH
Q 000050 1751 ESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2622)
Q Consensus 1751 ~~VR~~al~al~~lv~~~~~~~i-~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~ 1829 (2622)
..||..-++-+..++..+.+..+ +.++|.+..|+.|.+.-+|...+..+..+...++.
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~--------------------- 402 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK--------------------- 402 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---------------------
Confidence 99999988888888888876654 56999999999999999999888877776544320
Q ss_pred HHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRAL 1909 (2622)
Q Consensus 1830 ~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L 1909 (2622)
.+++ .+++..+.....|....+|.....+++.+........+. +.+.......+.|+-..-|..+...+
T Consensus 403 -----~~Ln----~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l 471 (690)
T KOG1243|consen 403 -----RNLN----GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLAL 471 (690)
T ss_pred -----hhhc----HHHHHHHHhhCccccCcccccceeeecccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHH
Confidence 1122 234444555556888888888888888777653221111 11222233346677777788888777
Q ss_pred HHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHH
Q 000050 1910 GELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2622)
Q Consensus 1910 ~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~l 1950 (2622)
....+..... +...++|.+....-|++..+|..+..++...
T Consensus 472 ~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 472 AATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 6665554433 5567788787777888888888877666554
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.95 Score=63.47 Aligned_cols=236 Identities=17% Similarity=0.184 Sum_probs=114.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhCccchhhhcH
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS-DKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~-~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i 1379 (2622)
+++.+...+.++...++......+..+++.++.-..+-+..+.+.+... .....|..-..+|... |. ..-
T Consensus 326 l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~a----GT-----~~a 396 (618)
T PF01347_consen 326 LLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQA----GT-----NPA 396 (618)
T ss_dssp HHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-----S-----HHH
T ss_pred HHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHc----CC-----HHH
Confidence 4444444443333333333333344555555443344455556655443 1223344333333322 21 134
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----- 1454 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----- 1454 (2622)
+.++.+.+.+++-. .. .|..++..+.......-..++..+.+.+-......++.+|.+|+-+++.+....-..
T Consensus 397 v~~i~~~I~~~~~~-~~-ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 397 VKFIKDLIKSKKLT-DD-EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHTT-S--HH-HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHcCCCC-HH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 45566666654322 22 233444454443322223334333333222222346789999988887776632211
Q ss_pred --------hHHhhHHHHHhhcc----CCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCC---CHHHHHHH
Q 000050 1455 --------GVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSAG 1519 (2622)
Q Consensus 1455 --------~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~---~~~VR~aA 1519 (2622)
..+.+++.+.+.+. ..+-..+..++.+||++.. +..++.+...+.+. ...+|.+|
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~A 544 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAA 544 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHH
Confidence 22455565555544 4455677888889988753 55667777777665 67899999
Q ss_pred HHHHHHHhhhcCChhHHhHHHHHHhhcCCCC--hhHH-HHHHHHH
Q 000050 1520 QTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILL 1561 (2622)
Q Consensus 1520 ~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~--~~~r-~al~~L~ 1561 (2622)
++||..++...++ .+.+.++....|+. ..+| .|+..+.
T Consensus 545 i~Alr~~~~~~~~----~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 545 IQALRRLAKHCPE----KVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HHTTTTGGGT-HH----HHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcH----HHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 9999988765543 33344444443433 3466 4555554
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=6.1 Score=59.72 Aligned_cols=328 Identities=12% Similarity=0.019 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHhccc-------hhhhHHHHHh
Q 000050 1861 RQAALHVWKTIVANTPKTLKEIMPVLMNTLISS----LASSSSERRQVAGRALGELVRKLGER-------VLPSIIPILS 1929 (2622)
Q Consensus 1861 R~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~----L~s~~~~~R~~A~~~L~~lv~~~~~~-------~l~~llp~L~ 1929 (2622)
|--++.-+..++......++-.++.++..+... -.+++..++..|+..|..+..+.-+. +...++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 334444444454433333333333433333332 23556778888888888877655322 2345666666
Q ss_pred hhcC-CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-------hhh
Q 000050 1930 RGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------QAI 2001 (2622)
Q Consensus 1930 ~~L~-d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~-------~~~ 2001 (2622)
..+. ..+.++|..++.++..++...+ ..+..-++.+...+.....+.++.+-..|.+.+..++..+-. ..+
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~-~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRV-NNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 6554 4578999999999999988765 356667888999988888888888888888888777654222 223
Q ss_pred hhhHHHHHHhcccCC---chhHHHHHHHHHHhhhccccccchhh-h-hhcCCCchH-HHHHHHHHHHHh-CCChhhhHhh
Q 000050 2002 DEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPHILP-K-LVHLPLSAF-NAHALGALAEVA-GPGLNFHLGT 2074 (2622)
Q Consensus 2002 ~~ilp~Ll~~L~~~~---~~~~aL~~L~~il~~~~~~ilp~Lip-~-L~~~~~~~~-~~~aL~sLa~~~-g~~l~~~l~~ 2074 (2622)
.+++..+.+--.... -+-.+++.|..+...-.+.-+....+ . ...++.... ............ ......+.=.
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 333333322222221 22344444443211000000000000 0 000000000 000000000000 1111223333
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh----hc----HHHHHHHHHhhcCC-----------------------
Q 000050 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EG----VESLVSELLKGVGD----------------------- 2123 (2622)
Q Consensus 2075 il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~----l~~ll~~Ll~~l~d----------------------- 2123 (2622)
++-.|.+...++..+||..|+..+-.++..+|. +. ++.++-.+...++.
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 444555555688899999999999888877654 22 33334444333321
Q ss_pred -CCh--hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccch
Q 000050 2124 -NQA--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2622)
Q Consensus 2124 -~~~--~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l 2189 (2622)
..| .+-..|+..+..++...-..+...++.++..|..++..+++.+...+..||..++...+...-
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~ 1496 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFS 1496 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCC
Confidence 012 233345555555554433345556677777777777888889999999999999887665443
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.2 Score=56.54 Aligned_cols=126 Identities=22% Similarity=0.301 Sum_probs=77.7
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh-
Q 000050 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR- 1583 (2622)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~- 1583 (2622)
.-.+.|++++||.+|+.++..+.+..+ ++ |..+ .+...... .|... ...+..++-.+.+
T Consensus 46 t~il~Dp~~kvR~aA~~~l~~lL~gsk-~~-------L~~A-e~~~~~~~---------sFtsl--S~tLa~~i~~lH~~ 105 (182)
T PF13251_consen 46 TCILKDPSPKVRAAAASALAALLEGSK-PF-------LAQA-EESKGPSG---------SFTSL--SSTLASMIMELHRG 105 (182)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHccH-HH-------HHHH-HhcCCCCC---------CcccH--HHHHHHHHHHHHHH
Confidence 346789999999999999999987532 11 1111 11110000 11110 1122233333333
Q ss_pred ---hhc-CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000050 1584 ---GLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2622)
Q Consensus 1584 ---~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~ 1650 (2622)
.+. +.+..+-....+++..+.....-.+--..+++.++..+...+.+.++++|..+..++|.+....
T Consensus 106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 106 LLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 333 3456677778888888776532222234567888888899999999999999999999998753
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.5 Score=53.25 Aligned_cols=143 Identities=15% Similarity=0.275 Sum_probs=100.5
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV 2184 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~-~~l~~~~~~il~~L~~~l~d~d-~~V~~~a~~aL~~l~~~~ 2184 (2622)
...++.+...+...+.++++..|..++..++..++.++ .-+..+...+++.++..++.++ ..+...+..++..++...
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 34577888888999999999999999999999998874 4466888999999999998655 456777888888776432
Q ss_pred CccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhh
Q 000050 2185 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS 2264 (2622)
Q Consensus 2185 ~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~ 2264 (2622)
... |. -.| +.
T Consensus 100 ~~~-------------------------------p~-----------------------l~R----------------ei 109 (165)
T PF08167_consen 100 RGK-------------------------------PT-----------------------LTR----------------EI 109 (165)
T ss_pred cCC-------------------------------Cc-----------------------hHH----------------HH
Confidence 110 00 011 12
Q ss_pred hhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHh
Q 000050 2265 LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322 (2622)
Q Consensus 2265 l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L 2322 (2622)
..|.++.++++++..+++ ......++.+|..++...+..++||..++...+...+
T Consensus 110 ~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 110 ATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred hhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 234455555566666553 3466677778888888888888888777777665543
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.27 Score=54.93 Aligned_cols=116 Identities=18% Similarity=0.282 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC--hhh
Q 000050 1885 VLMNTLISSLASSSSERRQVAGRALGELVRK-LGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG--KSQ 1958 (2622)
Q Consensus 1885 ~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~-~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~--~~~ 1958 (2622)
.++|.+++.+.+.+.--|..|...+.+++.. .++. ++|++++.+..+|+..++++...++.+|..++.... ++.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3444455556777777889999999999998 4444 578999999999999999999999999988844322 478
Q ss_pred HHHhHHhHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHhChhh
Q 000050 1959 LLSFMDELIPTIRTALCD-----------SILEVRESAGLAFSTLFKSAGMQA 2000 (2622)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d-----------~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2622)
+.+|+.+++|.+....+. .+..+++....++..+-++.|+++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 899999999998743321 234455555566666656666543
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.24 Score=55.93 Aligned_cols=136 Identities=21% Similarity=0.224 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHH------------HHHhcCCCHHHHHHHHHHHHHHHHHhccc------
Q 000050 1859 SVRQAALHVWKTIVAN-TPKTLKEIMPVLMNTL------------ISSLASSSSERRQVAGRALGELVRKLGER------ 1919 (2622)
Q Consensus 1859 ~VR~aA~~~l~~l~~~-~p~~l~~~l~~ll~~L------------~~~L~s~~~~~R~~A~~~L~~lv~~~~~~------ 1919 (2622)
.||..|+.++..++.. .++.+..|++.++|.- .-.+.|++..+|..|+.++..+.++....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3899999999999998 6788888888887643 33456899999999999999998764210
Q ss_pred -------h----------hhhHHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhH-HHhHHhHHHHHHHHhcCCcHH
Q 000050 1920 -------V----------LPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILE 1980 (2622)
Q Consensus 1920 -------~----------l~~llp~L~~~L~-d~~~~vR~~a~~~L~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~ 1980 (2622)
+ +-++-..|...+. +.+..+-...+.+++.++...+-..+ .+++..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 1122222333444 34666777788888888776654433 456788888888888889999
Q ss_pred HHHHHHHHHHHHHH
Q 000050 1981 VRESAGLAFSTLFK 1994 (2622)
Q Consensus 1981 VR~~A~~al~~l~~ 1994 (2622)
|+..+..+++.+..
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888887754
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=94.90 E-value=3.2 Score=53.48 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=48.3
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccc--hhh--hHHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000050 1885 VLMNTLISSLA-SSSSERRQVAGRALGELVRKLGER--VLP--SIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1885 ~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~--~l~--~llp~L~~~L~d~~~~vR~~a~~~L~~li~ 1952 (2622)
.++..+++.+. +.++.+-..|+.=+|++++..+.. ++. ..-..+++.+.++|+++|..|+.++..++.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34555566663 556677778888899999987433 322 134456677889999999999999988754
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.38 Score=58.65 Aligned_cols=176 Identities=18% Similarity=0.218 Sum_probs=115.3
Q ss_pred CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhh------HHHHHHHh
Q 000050 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP------LVGDLLSS 2357 (2622)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~------ll~~Ll~~ 2357 (2622)
.+.+-|..++.-|..+++.++....=.--..+..++..+.+++.++|..|+..+|..+...|.+.. .++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 356788999999999998876533211112344566689999999999999999999876665443 34567777
Q ss_pred hhc-CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhcCchH--HHH-HH
Q 000050 2358 LQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ--LAD-LL 2431 (2622)
Q Consensus 2358 l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~--~~~-~l 2431 (2622)
+.. .+..+|..++.|+..+|.+.......-..-.=+..|...+.+ .+...++.++..++.+......+. +.. .+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 753 457899999999999998765443222222235666777777 455667888999999887655432 111 11
Q ss_pred HH-HHhhcCCCCchhhHhHHHHHHHHHhh
Q 000050 2432 QE-LLNLASSPSWAARHGSVLVFATFLRH 2459 (2622)
Q Consensus 2432 ~~-ll~~~~~~~~~~r~~~~~~L~~~l~~ 2459 (2622)
+. +..+..+.++..+..+..++...+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 12 22444555555566666666555543
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=2.2 Score=55.44 Aligned_cols=143 Identities=19% Similarity=0.224 Sum_probs=103.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhh-Chhh----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh----cc
Q 000050 1848 ALYMVRSDVSLSVRQAALHVWKTIVAN-TPKT----LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL----GE 1918 (2622)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~l~~~-~p~~----l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~----~~ 1918 (2622)
.+|..+.-.|..||..|+.++-.+..- .|.. ...+++.=...+.+.|.|+.+.+|..|..-+..+.... +.
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 456678889999999999998777652 2333 23344445567788899999999999988877766554 33
Q ss_pred chhhhHHHHHhhhc-CCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000050 1919 RVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2622)
Q Consensus 1919 ~~l~~llp~L~~~L-~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2622)
.++..++..+..-+ .|...+||..+..+|..++.+ ....+.++.++|.+...+.|....||-++...+..+-
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 34444444443333 466779999999999887653 2334567889999999999999999998877776663
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.9 Score=56.29 Aligned_cols=290 Identities=13% Similarity=0.172 Sum_probs=145.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCC-ChhhHHhHHHHH
Q 000050 1876 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDP-SASRRQGVCIGL 1947 (2622)
Q Consensus 1876 p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~-~~~vR~~a~~~L 1947 (2622)
+..+.++.+.++..++..+..+....-.-..+|+-+++...++.+ ++.+..++....++| +|.--.-...++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 345566777777777777754322222334555555555555443 344444444444544 577777788899
Q ss_pred HHHHHhhCh---hhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh----hhhhhhHHHHHHhc-cc-CCch
Q 000050 1948 SEVMASAGK---SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM----QAIDEIVPTLLHAL-ED-DQTS 2018 (2622)
Q Consensus 1948 ~~li~~~~~---~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~----~~~~~ilp~Ll~~L-~~-~~~~ 2018 (2622)
+.++...+. +.+..+.+.+.|.+...|...-.+.-..+.+.++.+.+.... +....++|.|+.-- -. ...-
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni 176 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI 176 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc
Confidence 988887554 334577889999999999876666667777888888776652 23344555555322 11 1111
Q ss_pred hHHHHHHHHHHhhhccccc--cc------hhhhhhcCCCch-HHHHHHHHHHHHhCC-ChhhhHhhhHHHHHHhcC-CCC
Q 000050 2019 DTALDGLKQILSVRTTAVL--PH------ILPKLVHLPLSA-FNAHALGALAEVAGP-GLNFHLGTILPALLSAMG-DDD 2087 (2622)
Q Consensus 2019 ~~aL~~L~~il~~~~~~il--p~------Lip~L~~~~~~~-~~~~aL~sLa~~~g~-~l~~~l~~il~~Ll~~l~-~~~ 2087 (2622)
.....-|+..+...+..+. .. +..+|....... ..-.-+.++...+.. .+.+|++.|+..++..+. .+.
T Consensus 177 PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT 256 (435)
T PF03378_consen 177 PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKT 256 (435)
T ss_dssp HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 1222233334433333322 11 123444444332 333455666666554 689999999999999995 334
Q ss_pred HHHHHHHHHHHHHhhhccChhc------------HHHHHHH-HHhhcCC-CChhHHHHHHHHHHHHHhhccc---ccccc
Q 000050 2088 MDVQSLAKEAAETVTLVIDEEG------------VESLVSE-LLKGVGD-NQASIRRSSAYLIGYFYKNSKL---YLVDE 2150 (2622)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~~~~------------l~~ll~~-Ll~~l~d-~~~~vR~~A~~~L~~l~~~~~~---~l~~~ 2150 (2622)
+.........+..++...+.+. ...++.. ++..+.. ..+.-|..++-.+..+...++. .+...
T Consensus 257 ~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~ 336 (435)
T PF03378_consen 257 EKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQL 336 (435)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHH
Confidence 4433333222222222222211 2222221 1222222 2344555555555554332222 23445
Q ss_pred HHHHHHHHHHHhcCC
Q 000050 2151 APNMISTLIVLLSDS 2165 (2622)
Q Consensus 2151 ~~~il~~L~~~l~d~ 2165 (2622)
.+.++..++.++..+
T Consensus 337 w~~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 337 WPPLLEALLKLLERP 351 (435)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC
Confidence 566666666666544
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.053 Score=41.87 Aligned_cols=30 Identities=43% Similarity=0.722 Sum_probs=26.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
++|.+.+.++|++|+||..|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999874
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.64 E-value=24 Score=47.30 Aligned_cols=287 Identities=15% Similarity=0.115 Sum_probs=146.9
Q ss_pred hHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCC
Q 000050 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2622)
Q Consensus 1352 ~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2622)
...|..|+..+...+...+...+. .+....+.++..++....|++++..+..+.++-......--...+..+-..-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 467888888888888887776664 677778888877767788999998888888765431111111222222111112
Q ss_pred CCHHHHHHHHHHHHHHHH---hhcHHhHHhhHHHHHhhccCC---------------------------ChhhHHHHHHH
Q 000050 1432 QVVAVREAAECAARAMMS---QLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQL 1481 (2622)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~---~l~~~~v~~ilp~Ll~~L~~~---------------------------~w~~r~~a~~~ 1481 (2622)
++-..|- +++..+.. .+.. ....+.|.+...+..- +-..-..-+.+
T Consensus 82 ~d~~~~l---~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 157 (464)
T PF11864_consen 82 DDFDLRL---EALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQF 157 (464)
T ss_pred hhHHHHH---HHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHH
Confidence 2223333 33333332 2211 1234444444333210 00000111222
Q ss_pred HHHHHhhCchhh-hhhhhhhHHHHhhhhcCC-CHHHHHHHHHHHHHHhh--hcCChhHHhHHHHHHhhcCCCC--hhHHH
Q 000050 1482 LGAMAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPN--DHTKY 1555 (2622)
Q Consensus 1482 L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~--~~~~~~i~~ilp~Ll~~l~d~~--~~~r~ 1555 (2622)
+.++..-....+ ...+..++..++.++..+ ++..=+.+...+..+.. .+++..+..++..|.....-.+ ...-.
T Consensus 158 l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~ 237 (464)
T PF11864_consen 158 LVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWR 237 (464)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHH
Confidence 233332111111 123445666666665433 33334677777777765 4555667777777777643321 11113
Q ss_pred HHHHHHhccccccCChhhhhhHHHHHHhhh------cCCCHHHHHHHHHHHHHhhhhcCCCCcc-cch-HhhhHHHHHHH
Q 000050 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGL------RERSAETKKKAAQIVGNMCSLVTEPKDM-IPY-IGLLLPEVKKV 1627 (2622)
Q Consensus 1556 al~~L~~~~~~~~~~~~~l~~i~p~L~~~l------~d~~~~vr~~a~~~l~~l~~~~~~~~~l-~~~-l~~ll~~L~~~ 1627 (2622)
++..|..+. .+.. .+-.+...+ ..++..+-+.|...++.+....+...-. .++ ...+++.+...
T Consensus 238 ~m~nL~~S~----~g~~----~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a 309 (464)
T PF11864_consen 238 TMRNLLKSH----LGHS----AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA 309 (464)
T ss_pred HHHHHHcCc----cHHH----HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH
Confidence 444443311 1112 223333333 1235666778888888876543221111 111 12489999999
Q ss_pred hcCCCHHHHHHHHHHHHHHH-hhhCC
Q 000050 1628 LVDPIPEVRSVAARAIGSLI-RGMGE 1652 (2622)
Q Consensus 1628 L~d~~~~vR~~a~~aL~~L~-~~~g~ 1652 (2622)
+..+++.|-......+..+. +.++.
T Consensus 310 l~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 310 LKSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred HhCCCCeehHHHHHHHHHHHhHhhhh
Confidence 99777777767777777776 44443
|
|
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.7 Score=57.02 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHhHHhhHH-HHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHHhhhhcCC
Q 000050 1434 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDT 1511 (2622)
Q Consensus 1434 ~~VR~aa~~al~~i~~~l~~~~v~~ilp-~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~ 1511 (2622)
...|-+|..+++.++..++......++. .++..|.+...-.|..+..++..++.......... .+.+.+.|..+|.++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 4568889999999999998888777776 58889999988899999999999998644321111 345556666666633
Q ss_pred C-----------HHHHHHHHHHHHHHhh
Q 000050 1512 H-----------PKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1512 ~-----------~~VR~aA~~aL~~l~~ 1528 (2622)
. ..+|..|..-+..|..
T Consensus 181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 181 EPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3455555555554443
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=94.47 E-value=17 Score=47.12 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=52.8
Q ss_pred CchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhh--hhhhhhhhhHHHHHhhcCCCCH----hhHHHHHHHHHHH
Q 000050 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS--LKEFVIPITGPLIRIIGDRFPW----QVKSAILSTLSII 2299 (2622)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~--l~p~v~~i~~~Li~~l~~~~~~----~vk~~al~~L~~L 2299 (2622)
.++..+.+...++.++++.+|.+|..+...++.....+. ..+.+.-+..|+...++.+... +++..++..++.+
T Consensus 271 ~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 271 HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence 455667777778889999999999999999997654322 2344455667877776654444 6677777777765
Q ss_pred H
Q 000050 2300 I 2300 (2622)
Q Consensus 2300 ~ 2300 (2622)
+
T Consensus 351 l 351 (372)
T PF12231_consen 351 L 351 (372)
T ss_pred H
Confidence 5
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=94.46 E-value=22 Score=46.10 Aligned_cols=242 Identities=17% Similarity=0.222 Sum_probs=136.3
Q ss_pred ccchHhhhHHHHHHHhcC------C-CHHHHHHHHHHHHHHHh------hhCCCCchhhHHHHHHHhhhcCChHHH-HHH
Q 000050 1613 MIPYIGLLLPEVKKVLVD------P-IPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKSDNSNVER-SGA 1678 (2622)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d------~-~~~vR~~a~~aL~~L~~------~~g~~~~~~ll~~Ll~~L~~~~~~~~r-~~a 1678 (2622)
+...++.++..+..-+.. | +.++-..|.+++|.+.. .+.++....++......+.+....... ...
T Consensus 33 l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~ 112 (372)
T PF12231_consen 33 LQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHY 112 (372)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444455555444432 2 56777899999998874 233333334566666666554433221 122
Q ss_pred HHHHHHHHHHhchhHH-----HhHhHHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh
Q 000050 1679 AQGLSEVLAALGTVYF-----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2622)
Q Consensus 1679 ~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~ 1751 (2622)
..+++. ..++...+ +.++ ..+..+.+ +...+-...+.++..+...++..+..+...-+|.++..+-+...
T Consensus 113 l~~ls~--Q~f~~~~~~~~~~~~l~-~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k 189 (372)
T PF12231_consen 113 LWCLSD--QKFSPKIMTSDRVERLL-AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK 189 (372)
T ss_pred HHHHHc--CCCCCcccchhhHHHHH-HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 222221 12232222 2222 22222232 34445556677888888888887877777778888888878888
Q ss_pred HHHHHHHHHHHHHHHHhhhc-hhhh-hHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHH
Q 000050 1752 SVRDAALGAGHVLVEHYATT-SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2622)
Q Consensus 1752 ~VR~~al~al~~lv~~~~~~-~i~~-llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~ 1829 (2622)
.+|..|...+..+...++.. .+.. +.+.+...+.++ +......+-+..++. +.++....-..
T Consensus 190 ~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~--------------~~~~~~~a~~i 253 (372)
T PF12231_consen 190 DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIK--------------SKDEYKLAMQI 253 (372)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHh--------------CcCCcchHHHH
Confidence 89998877776665555433 1222 222222222222 444444444555441 10122223345
Q ss_pred HHHHHHHhCh------hhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Q 000050 1830 GRAIIEVLGR------DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1830 ~~~l~~~Lg~------e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2622)
+..++-.+|. ++.++.+...-.|.++.+..+|..|..+|+.++-
T Consensus 254 W~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 254 WSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5555555653 3556677777778888999999999999999986
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.9 Score=58.75 Aligned_cols=151 Identities=25% Similarity=0.364 Sum_probs=111.8
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc----ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-
Q 000050 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG- 1649 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~- 1649 (2622)
...-|.+-++++-++.+||..|+..+-++.-.. +|+. +...++.=...+..+|.|+.|.||..|...+..+...
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999998887653 3332 3333444456678889999999999999887776653
Q ss_pred ---hCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHH-hchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhh
Q 000050 1650 ---MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2622)
Q Consensus 1650 ---~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~-~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~ 1725 (2622)
+++....+++..+.+.+..+....+|...+.++..++.. .....++.++|.+--.+.|....||-++..++..+-.
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 334455677777777777777777899999998887652 2233567788877777888899999988887776654
Q ss_pred h
Q 000050 1726 S 1726 (2622)
Q Consensus 1726 ~ 1726 (2622)
.
T Consensus 332 v 332 (1005)
T KOG1949|consen 332 V 332 (1005)
T ss_pred h
Confidence 3
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.49 Score=52.83 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccChhh----------------------------------H-----H
Q 000050 2312 PQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDP----------------------------------L-----V 2351 (2622)
Q Consensus 2312 ~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~----------------------------------l-----l 2351 (2622)
|+|.+.+++.+..+ +..+|..+.++||.|..++|..-+ + +
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi 88 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVI 88 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHH
Confidence 89999999999886 899999999999999765432111 1 1
Q ss_pred HHHHHhhhcCC-HhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000050 2352 GDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2622)
Q Consensus 2352 ~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2622)
..|+..++++. ..-...+++|+-.++...|.+. .+|.+++++.+...++..++..|+..-.-|+.+.
T Consensus 89 ~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 89 NALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22333333332 3334456666666665555554 5666666666666666555566655555555544
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.96 E-value=45 Score=48.57 Aligned_cols=171 Identities=16% Similarity=0.111 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhhh-CccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHHHcCCC
Q 000050 1356 RGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC--EKLGRLFEPYVIQMLPLLLVAFSDQ 1432 (2622)
Q Consensus 1356 ~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La--~~~~~~~~~~v~~ilp~ll~~l~D~ 1432 (2622)
..|+.+....+.+. |..... .++..+.+...+..+|++|.+++.-+..+. ..++ .++....++-..+...+.|.
T Consensus 1505 ~~a~~~~~lm~~~~~~~~l~~--e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~ 1581 (1710)
T KOG1851|consen 1505 NSALLCHSLMSLSWIGHHLQP--EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDD 1581 (1710)
T ss_pred HHHHHHHHHHHhhccchhhHH--HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcch
Confidence 34444444444333 333332 567777766667778999998777665544 2344 45666778888889999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccC--CChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcC
Q 000050 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 1510 (2622)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D 1510 (2622)
+..||+.|..++.-++..--...+...-........+ .+--..|||+..||+++-..|-.+...+|+.+..+.....+
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e 1661 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARE 1661 (1710)
T ss_pred HHHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCC
Confidence 9999999999988776532111111111122222222 23345789999999999888877666666666655555556
Q ss_pred CCHHHHHHHHHHHHHHhhhc
Q 000050 1511 THPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
+ ..++.++-+++..|-..-
T Consensus 1662 ~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1662 S-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred c-hHHHHHHHHHHHHHHHHh
Confidence 4 667888888888776544
|
|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.87 E-value=29 Score=45.31 Aligned_cols=147 Identities=14% Similarity=0.213 Sum_probs=100.6
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC-----h---hhHHHHHHHHHHHHHHHhcCCC------------HHHHH
Q 000050 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANT-----P---KTLKEIMPVLMNTLISSLASSS------------SERRQ 1903 (2622)
Q Consensus 1844 ~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-----p---~~l~~~l~~ll~~L~~~L~s~~------------~~~R~ 1903 (2622)
.++..+..+......+|-+.....|..+.... . ..|++|+..++..+.....-+. .+.|.
T Consensus 291 ~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 291 RIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRL 370 (559)
T ss_pred hHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHH
Confidence 44445555666667789999999998876521 1 3468899999999888776221 24677
Q ss_pred HHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC--cHH
Q 000050 1904 VAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS--ILE 1980 (2622)
Q Consensus 1904 ~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~--d~~ 1980 (2622)
.....+.++.--.|.. .+..+.-.+.+ +..+++.-.+++..+..++.+..++ -.+++|.+.+.++.- ...
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~-----e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE-----ENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc-----ccchHHHHHHHHhCCccchh
Confidence 7888888888777765 34444444443 4567888889999888887766543 356777777766532 233
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000050 1981 VRESAGLAFSTLFKSAG 1997 (2622)
Q Consensus 1981 VR~~A~~al~~l~~~~g 1997 (2622)
+|..++..+|.+.+...
T Consensus 444 ~~~ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVE 460 (559)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888876543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.77 Score=62.05 Aligned_cols=218 Identities=20% Similarity=0.166 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHhcccC------hhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHhh
Q 000050 2328 TVRSSAALALGKLSALSTR------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSS-AVKIRVYSVLKDLV 2400 (2622)
Q Consensus 2328 ~vR~~Aa~aLg~L~~~~~~------~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~-~~~~~i~~~L~~~l 2400 (2622)
.=|.+|..-||++..++|= --.++|-+++.++++-.+.|-...--...++.-- ++... -..+.........+
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEe
Confidence 4577888888887665541 1246788888888877777776655555555321 11111 11111111222223
Q ss_pred cC---CCHHHHHHHHHHHHHHHhhcCchHH----HHHHHHHHhhcCC-CCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000050 2401 YH---DDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2622)
Q Consensus 2401 ~~---~~~~vr~~aa~~Lg~L~~~~~~~~~----~~~l~~ll~~~~~-~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~ 2472 (2622)
.+ -+++.|.++|..|..++.+++-.+- .+++...+..+.+ +.+-.|+-.+.+|+.+-.+.++.-.. +.-+.
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~ 642 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDN 642 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-ccccc
Confidence 33 1467899999999999988765431 1233333333444 35667777888898887777665432 23345
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCch-------------hhHhHH----HHHHhhcCCCCHHHHHH
Q 000050 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTT-------------VVVDIL----ASVVSALHDDSSEVRRR 2535 (2622)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~-------------~l~~~l----~~l~~~l~d~s~dvr~~ 2535 (2622)
..+.|...+.|.-+++|.+|+-|+|.++....+..++... .....+ ..++..++|.++-||..
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence 6677788888999999999999999999863211000000 011222 36677789999999999
Q ss_pred HHHHHHHHHhhC
Q 000050 2536 ALSALKSVAKAN 2547 (2622)
Q Consensus 2536 a~~~l~~~a~~~ 2547 (2622)
.+..+...+..+
T Consensus 723 v~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 723 VVVALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHHHhh
Confidence 888888777654
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=93.74 E-value=8.7 Score=47.59 Aligned_cols=218 Identities=20% Similarity=0.176 Sum_probs=141.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hhCc-cch-hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-cc
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFGI-SSL-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RL 1413 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~-~lg~-~~l-~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~-~~ 1413 (2622)
-++..+......++|..-..+..-|..+.+ .-.. ..+ ....+...|.+++...-...+-.-|+..+..+.+..| +.
T Consensus 11 ~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~ 90 (307)
T PF04118_consen 11 EVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDG 90 (307)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 344555555555677776665555555555 1111 111 1235777888888876556677789999999999988 34
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2622)
+...+.-..|.++..+......||-.-.+.....+-.+++. ..+.++..++.+++++.-........++..+.....
T Consensus 91 L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 91 LAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred HHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 55555556788888888888899988888888777677663 235566666778888777777777788877776433
Q ss_pred hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---------------ChhHHhHHHHHHhhcCCCChhHH-
Q 000050 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHTK- 1554 (2622)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---------------~~~i~~ilp~Ll~~l~d~~~~~r- 1554 (2622)
.. .++..++.++- ++|.+|..|..-+..-..... .++..-++..+...+.|++.-++
T Consensus 171 ~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR 243 (307)
T PF04118_consen 171 DK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQR 243 (307)
T ss_pred hh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHH
Confidence 22 23344444444 378888888765543322222 12234467788888888876654
Q ss_pred HHHHHHHh
Q 000050 1555 YSLDILLQ 1562 (2622)
Q Consensus 1555 ~al~~L~~ 1562 (2622)
.+++.+..
T Consensus 244 ~~LDlLl~ 251 (307)
T PF04118_consen 244 GFLDLLLS 251 (307)
T ss_pred HHHHHHHH
Confidence 67777664
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.71 E-value=17 Score=47.69 Aligned_cols=169 Identities=20% Similarity=0.305 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCC------------CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHh
Q 000050 1631 PIPEVRSVAARAIGSLIRGMGEE------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2622)
Q Consensus 1631 ~~~~vR~~a~~aL~~L~~~~g~~------------~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~ll 1698 (2622)
.....|..-.+|++.+...+-+. +.+.++..+.+.+.+. ...+|-.++.+++++...+|....+.++
T Consensus 208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~-~~~~rf~~a~~~aki~srl~w~l~~sfi 286 (993)
T COG5234 208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSI-DSFVRFSAAKGLAKIISRLPWNLAESFI 286 (993)
T ss_pred cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccc-cHHHHHHHHhhHHHHHhhcccccHHHHH
Confidence 34556666667777766655442 1223334443333333 2447888899999998877754222222
Q ss_pred H------------HHHHhcc--CCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh--------HHHHH
Q 000050 1699 P------------DIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE--------SVRDA 1756 (2622)
Q Consensus 1699 p------------~l~~~l~--~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~--------~VR~~ 1756 (2622)
. .+.+.+. ..++.+-.+++..++ ++...+-++..-+ +.|.+.+++..+.+ .||++
T Consensus 287 ~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRds 363 (993)
T COG5234 287 DIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDS 363 (993)
T ss_pred HHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeeccceeecc
Confidence 1 1111111 124445555555555 5555444433322 56666677764432 57888
Q ss_pred HHHHHHHHHHHhhhchhhh----hHHHHhh-ccCCCchHHHHHHHHHHHHHH
Q 000050 1757 ALGAGHVLVEHYATTSLPL----LLPAVED-GIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1757 al~al~~lv~~~~~~~i~~----llp~l~~-~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
+.-.++.+...++....+. +.--+.+ .++|..-.+|.++..++-+.+
T Consensus 364 s~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 364 SCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred cceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 7777777776666554433 2333333 788998889998887776665
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.1 Score=53.33 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=106.8
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH---hhHHHH
Q 000050 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK---LVLPSL 1463 (2622)
Q Consensus 1387 l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~---~ilp~L 1463 (2622)
+.++ +|...-.++..+..+++.-++.+.+.+..++..+.+.++++...|-.+|+.++..+++.+...... .++-.|
T Consensus 97 L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 97 LSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQL 175 (334)
T ss_pred hchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 799999999999999988778888888999999999999999999999999999999988776543 222222
Q ss_pred HhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000050 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2622)
Q Consensus 1464 l~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2622)
+..-..++-.++..+-.+|.+|.+....+ .+++.|..++.+.++.+|..++.+.......++
T Consensus 176 l~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 176 LHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 22223455678888999999998864332 345566667888999999999988877776654
|
|
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.7 Score=57.10 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhhccChhcHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHhhccccccc-cHHHHHHHHHHHhcCCC
Q 000050 2090 VQSLAKEAAETVTLVIDEEGVESLVS-ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD-EAPNMISTLIVLLSDSD 2166 (2622)
Q Consensus 2090 vr~~a~~al~~l~~~~~~~~l~~ll~-~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~-~~~~il~~L~~~l~d~d 2166 (2622)
-|..+..+++.++..+..+.+..+.. .|...+++.....|..++..+..++......... ..+.+...|...+.++.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~ 181 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPE 181 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCC
Confidence 47788889999998887777777777 5889999999999999999999999875432211 13456666666666443
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=93.57 E-value=4.8 Score=55.81 Aligned_cols=170 Identities=14% Similarity=0.080 Sum_probs=90.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-----
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS----- 1452 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~----- 1452 (2622)
.-+.++.+.+.+++ -... .+..++..+.......-..++..+++.+-.-..-+++.+|..|+-++..+....-
T Consensus 357 ~a~~~i~~~i~~~~-~~~~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~ 434 (574)
T smart00638 357 PALKFIKQWIKNKK-ITPL-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPS 434 (574)
T ss_pred HHHHHHHHHHHcCC-CCHH-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34556777776653 2222 2333344444333322233343433332222223467899999888887766321
Q ss_pred --HHhHHhhHHHHHhhcc----CCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhc---CCCHHHHHHHHHHH
Q 000050 1453 --AQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTAL 1523 (2622)
Q Consensus 1453 --~~~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~---D~~~~VR~aA~~aL 1523 (2622)
...+..++|.+.+.|. ..+-..+...+.+||++.. +..++.+...+. +..+.+|.+|++||
T Consensus 435 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 435 CPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred CChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 1123566777666553 2344456677888887754 333344444443 34678999999999
Q ss_pred HHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHH
Q 000050 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2622)
Q Consensus 1524 ~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~ 1561 (2622)
..++...+......+++.+.+.- .+..+| .|+..+.
T Consensus 505 r~~a~~~p~~v~~~l~~i~~n~~--e~~EvRiaA~~~lm 541 (574)
T smart00638 505 RNLAKRDPRKVQEVLLPIYLNRA--EPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHhCchHHHHHHHHHHcCCC--CChHHHHHHHHHHH
Confidence 99987654322233444443221 223466 4555554
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.26 E-value=42 Score=45.28 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHH
Q 000050 1753 VRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2622)
Q Consensus 1753 VR~~al~al~~lv~~~~~~----~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~ 1828 (2622)
-|..|.+++..+.+.|... +.+-++..+.+.-. +..+-..+++.+-.++.+ +. .+ ...|++...+.
T Consensus 39 DRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~-----dd--~~-~v~dds~qsdd 108 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSH-----DD--SP-EVMDDSTQSDD 108 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhc-----Cc--ch-hhcccchhhhH
Confidence 4788888998888777443 33334443333211 222333344444433321 00 00 00011112233
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHH---HHHHHHHHHHHhcCCCHHHHHHH
Q 000050 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI---MPVLMNTLISSLASSSSERRQVA 1905 (2622)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~---l~~ll~~L~~~L~s~~~~~R~~A 1905 (2622)
.+.-+.+.+-. ..+.+..+...+...+..||..+++.+.++..+.|..++.. .|.-+..++..+.|..+.+|..+
T Consensus 109 ~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEA 186 (970)
T ss_pred HHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhH
Confidence 33444443321 12344445555667788999999999999999988777654 47778888899999999999999
Q ss_pred HHHHHHHHHHhc
Q 000050 1906 GRALGELVRKLG 1917 (2622)
Q Consensus 1906 ~~~L~~lv~~~~ 1917 (2622)
+-.|.++++..+
T Consensus 187 iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 187 ILLLSELVKDNS 198 (970)
T ss_pred HHHHHHHHccCc
Confidence 999999987654
|
|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.18 E-value=37 Score=44.40 Aligned_cols=312 Identities=15% Similarity=0.175 Sum_probs=154.6
Q ss_pred hHhhhHHHHHHHhcC---CCHHHHHHHHHHHHHHHh--hhCCCCc---hhhHHHHHHHhhhcCChHHHHHHHHHHHHHHH
Q 000050 1616 YIGLLLPEVKKVLVD---PIPEVRSVAARAIGSLIR--GMGEENF---PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2622)
Q Consensus 1616 ~l~~ll~~L~~~L~d---~~~~vR~~a~~aL~~L~~--~~g~~~~---~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~ 1687 (2622)
+...++..+..++++ +...+-..+.+++++-.. .+..+.+ ..++..++..++.+. --..+..++..+..
T Consensus 150 ~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~---lhe~At~cic~ll~ 226 (559)
T KOG2081|consen 150 QVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDE---LHEEATECICALLY 226 (559)
T ss_pred hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccch---hhHHHHHHHHHHHH
Confidence 334455555555543 335666788888887665 3333322 244555666666332 12234444443333
Q ss_pred Hhch--h--HH-------HhHhHHHHHhc-cCCChhhHHHHHHHHHHhhhhhCcchh---hhHHhHHHHHHhhcCCCChH
Q 000050 1688 ALGT--V--YF-------EHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQ---NYLQQVLPAILDGLADENES 1752 (2622)
Q Consensus 1688 ~~g~--~--~l-------~~llp~l~~~l-~~~~~~vR~~al~~l~~L~~~~g~~f~---p~l~~ii~~ll~~L~d~~~~ 1752 (2622)
..-. + .+ ..+++...... ...+.+-+++....|..++..+-.... .+.-.++..++-...+.+.+
T Consensus 227 ~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~e 306 (559)
T KOG2081|consen 227 CSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTE 306 (559)
T ss_pred HhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchh
Confidence 2110 0 01 12233333322 234666777778888777765421110 01122444455555555556
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchH--HHHHHHHHHHHHHHHhcCCcccccccCCCCCCccc-----
Q 000050 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR--IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS----- 1825 (2622)
Q Consensus 1753 VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~r--vR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~----- 1825 (2622)
|-+.....+..+-+..-.. .|...+ .|--..+++.-+.+++.-..+..... +++++..
T Consensus 307 vie~SF~fW~~lse~l~~~-------------~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~--Ee~~~f~~fR~~ 371 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTLT-------------DDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLP--EEESEFFEFRLK 371 (559)
T ss_pred hhhhhHHhhhhhHHHHhcc-------------ccHHHHHHhHHHHHHHHHHHHHHccCCCccccCc--cchhHHHHHHHH
Confidence 6555555544433221110 000011 12333445555555543221100000 0111110
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHH
Q 000050 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1903 (2622)
Q Consensus 1826 ~~~~~~~l~~~Lg~e~~~~il~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~ 1903 (2622)
..++.+.+.-.+|. ++.++.+|+.+ +..+|+.-++++-.+..++.+.+..-.+++|.+++.+.+.=. . ...|.
T Consensus 372 v~dvl~Dv~~iigs---~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~-Q-~~~~~ 446 (559)
T KOG2081|consen 372 VGDVLKDVAFIIGS---DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE-Q-APLRY 446 (559)
T ss_pred HHHHHHHHHHHhCc---HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc-c-hhHHH
Confidence 11112222233443 34566666554 356899999999999999998876667788888887764322 2 23888
Q ss_pred HHHHHHHHHHHHhccc--hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000050 1904 VAGRALGELVRKLGER--VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1904 ~A~~~L~~lv~~~~~~--~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~ 1952 (2622)
++...+|++.+.+... .+..++..+..++.... ....+..++..++.
T Consensus 447 ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 447 TSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 8998888888766433 34455555555555443 33444455555544
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.13 E-value=42 Score=44.94 Aligned_cols=344 Identities=16% Similarity=0.178 Sum_probs=165.8
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhh
Q 000050 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALK 1667 (2622)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~-~g~~~~~~ll~~Ll~~L~ 1667 (2622)
++++-..+.+++|.+.+.+.- .-+. -+..++.+.+.+. ..++|.+|..|+-+++.. +.+-.--.++..+...+.
T Consensus 206 npgl~~~cLdc~g~fVSWIdI-nLIa--Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDI-NLIA--NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhh-hhhh--chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 778888888888887765422 1111 2346677777776 478999999999888763 222111122332312111
Q ss_pred -----hcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhc-cCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHH
Q 000050 1668 -----SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2622)
Q Consensus 1668 -----~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l-~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ 1741 (2622)
+.+.. +-......++.++.+.|.+.. .+.+.+ +..+...++.+... +..++|.
T Consensus 281 lfg~~s~dq~-~d~df~e~vskLitg~gvel~-----~i~s~lnseld~~~kqn~l~~---------------ll~~vpy 339 (980)
T KOG2021|consen 281 LFGYHSADQM-DDLDFWESVSKLITGFGVELT-----IIISQLNSELDTLYKQNVLSI---------------LLEIVPY 339 (980)
T ss_pred HHhhhccccc-cCchHHHHHHHHHhhcceeee-----hhHhhhhhccCHHHHHHHHHH---------------HHHHHHH
Confidence 11100 111233445666777776522 111222 22344444433322 3347788
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC-CCC
Q 000050 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG-GSD 1820 (2622)
Q Consensus 1742 ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~-~~d 1820 (2622)
+++.+.|+++++-......+...+..+... ..+.+.. ++-.. ..+-+...++.-....-..++ .++
T Consensus 340 llq~l~~e~ddit~~ifpFlsdyl~~LKkl----------~~ls~~q-k~~l~--~illai~kqicydemy~nddn~tg~ 406 (980)
T KOG2021|consen 340 LLQFLNNEFDDITAKIFPFLSDYLAFLKKL----------KALSSPQ-KVPLH--KILLAIFKQICYDEMYFNDDNVTGD 406 (980)
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHhhc----------ccccchh-hccHH--HHHHHHHHHHhccHHhhcccCCCCc
Confidence 889998888776555444443322211110 0011110 00000 011111111100000000011 111
Q ss_pred CCcccHHHHHHH---HHHHhC---hhh----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhh--------HH--
Q 000050 1821 DEGASTEAHGRA---IIEVLG---RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT--------LK-- 1880 (2622)
Q Consensus 1821 de~~~~~~~~~~---l~~~Lg---~e~----~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~--------l~-- 1880 (2622)
|+++.-++.++. +.+.++ ++. ..+.++.-.+.....+|..-+.|+..+-.+.+..+.. ..
T Consensus 407 EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~ 486 (980)
T KOG2021|consen 407 EEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTS 486 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHH
Confidence 111112222222 222222 221 1222333334457788999999999988888755421 11
Q ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHh---c--cchhhhHHHHHh--hhcCCCChhhHHhHHHHHHHHH
Q 000050 1881 EIMPVLMNTLISS--LASSSSERRQVAGRALGELVRKL---G--ERVLPSIIPILS--RGLKDPSASRRQGVCIGLSEVM 1951 (2622)
Q Consensus 1881 ~~l~~ll~~L~~~--L~s~~~~~R~~A~~~L~~lv~~~---~--~~~l~~llp~L~--~~L~d~~~~vR~~a~~~L~~li 1951 (2622)
..+..+++.+++. .+.++ +......+..+++.. . ....|.++..+. .++.+.+..||..+.+.....+
T Consensus 487 ~vl~~~~~ll~tsqv~~h~h---~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfV 563 (980)
T KOG2021|consen 487 QVLFLNELLLMTSQVLAHDH---ELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFV 563 (980)
T ss_pred HHHHHHHHHHHHcccccCCc---hHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHH
Confidence 1222333333322 22334 344444454455432 1 113444554444 3677788999999999988887
Q ss_pred HhhChhhHHHhHHhHHHHHHHHhc
Q 000050 1952 ASAGKSQLLSFMDELIPTIRTALC 1975 (2622)
Q Consensus 1952 ~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2622)
+... ..+.+|.+.++..+...|.
T Consensus 564 KlLk-kqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 564 KLLK-KQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHc
Confidence 7653 5677788888888888773
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.62 Score=52.04 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=83.5
Q ss_pred HhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHh---chh
Q 000050 1617 IGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL---GTV 1692 (2622)
Q Consensus 1617 l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~---g~~ 1692 (2622)
+|.+++.+...+. +.++.+|..+.+++|.++.. .+-.+.... ..... .....-............+. ..+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP~~~k~~~----~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL-DPYKHKSIQ----KSLDS-KSSENSNDESTDISLPMMGISPSSEE 81 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-CcHHHhccc----ccCCc-cccccccccchhhHHhhccCCCchHH
Confidence 5788999988887 45799999999999998652 111111000 00000 00000000000000111111 122
Q ss_pred HH-HhHhHHHHHhccCCC-hhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000050 1693 YF-EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2622)
Q Consensus 1693 ~l-~~llp~l~~~l~~~~-~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv 1765 (2622)
+. .-.+..+++.++++. ..-+..++.++..+....|..-.||+++++|.++..+....+..|+..+.-+..++
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22 233455666666642 33445677888888888888789999999999999998777777777766665554
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.6 Score=47.57 Aligned_cols=138 Identities=25% Similarity=0.160 Sum_probs=98.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccC
Q 000050 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP 2309 (2622)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p 2309 (2622)
...-+...+.+++++.|-.++..++.+++..+.+.+..+.......++.+++...+..++..++.++..+.......
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~--- 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK--- 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC---
Confidence 44445566777788999999999999999987788877778888888999988778889999999999988765431
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHH
Q 000050 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK 2389 (2622)
Q Consensus 2310 ~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~ 2389 (2622)
|.+ .|..+ .|++..+++.+++.+++ ......++++|..++...+..+ .++.
T Consensus 103 --p~l--------------~Rei~----------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~-rp~~ 153 (165)
T PF08167_consen 103 --PTL--------------TREIA----------TPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF-RPFA 153 (165)
T ss_pred --Cch--------------HHHHh----------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc-cchH
Confidence 222 22211 25566667777776653 4567788888888888776655 4555
Q ss_pred HHHHHHHHHh
Q 000050 2390 IRVYSVLKDL 2399 (2622)
Q Consensus 2390 ~~i~~~L~~~ 2399 (2622)
.++-..+...
T Consensus 154 ~ki~~~l~~l 163 (165)
T PF08167_consen 154 NKIESALLSL 163 (165)
T ss_pred HHHHHHHHHH
Confidence 6655555433
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.9 Score=50.27 Aligned_cols=111 Identities=15% Similarity=0.234 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhh-----cCCCCH-----hhHHHHHHHHHHHHHhcCCCccCchHHHHHH
Q 000050 2248 QAALGLGELIEVTSEQSLKEFVIPITGPLIRII-----GDRFPW-----QVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317 (2622)
Q Consensus 2248 ~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l-----~~~~~~-----~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~ 2317 (2622)
........+.+... -.+.||+-++.+.++.++ +.. +. .+|-.|...++..+.+.+...+..-|.+.++
T Consensus 255 Tv~~m~~sLL~N~~-iFvdPY~hqlmPSilTcliakklg~~-p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrT 332 (450)
T COG5095 255 TVVMMYSSLLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNV-PDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRT 332 (450)
T ss_pred HHHHHHHHHhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHH
Confidence 34455555555443 346788888877766543 332 22 3788889999999999999888889999999
Q ss_pred HHHHhCCC--CHHHHHHHHHHHHHHHh------cccChhhHHHHHHHhhhc
Q 000050 2318 FIKCLQDS--TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQV 2360 (2622)
Q Consensus 2318 llk~L~d~--~~~vR~~Aa~aLg~L~~------~~~~~~~ll~~Ll~~l~~ 2360 (2622)
++|.+-|. -....--|.+++..+.. +.|+.+.+...+-+.+..
T Consensus 333 llKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~ 383 (450)
T COG5095 333 LLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEK 383 (450)
T ss_pred HHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhc
Confidence 99998885 46777788888887733 357777666655555543
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.49 E-value=51 Score=44.22 Aligned_cols=425 Identities=16% Similarity=0.112 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcC
Q 000050 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLK 1933 (2622)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s-~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~ 1933 (2622)
...|-.|++-+...+...+- .-++.++...-..+.. ...+.|..+...|..+++.-+.. ....+...+...-.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~ 80 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSN 80 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCC
Confidence 34566677777766665553 3455555555555553 35678999999999999876542 22344444443333
Q ss_pred CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHH-HHHHHhChhh---hhhhHHHHH
Q 000050 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS-TLFKSAGMQA---IDEIVPTLL 2009 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~-~l~~~~g~~~---~~~ilp~Ll 2009 (2622)
+++-..|..++.+|.+ .| ..+..+...+.|.+...+...-..++..-..+-. ......+... -+..+
T Consensus 81 ~~d~~~~l~aL~~LT~----~G-rdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l---- 151 (464)
T PF11864_consen 81 DDDFDLRLEALIALTD----NG-RDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL---- 151 (464)
T ss_pred chhHHHHHHHHHHHHc----CC-cCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH----
Confidence 4455677777776654 33 3344455666666666553322111111000000 0000000000 00000
Q ss_pred HhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChh-hhHhhhHHHHHHhc-CCCC
Q 000050 2010 HALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN-FHLGTILPALLSAM-GDDD 2087 (2622)
Q Consensus 2010 ~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~-~~l~~il~~Ll~~l-~~~~ 2087 (2622)
...++-+..++.-. ...+. ..+..++..++... ...+
T Consensus 152 ---------~~ll~~l~nviKfn--------------------------------~~~l~e~~i~~lv~~i~~iC~~Ts~ 190 (464)
T PF11864_consen 152 ---------SDLLQFLVNVIKFN--------------------------------FNYLDEDEISSLVDQICTICKSTSS 190 (464)
T ss_pred ---------HHHHHHHHHHHhcC--------------------------------CCCCCHHHHHHHHHHHHHHHhccCc
Confidence 01111111111000 00011 22333444444443 2333
Q ss_pred HHHHHHHHHHHHHhhh--ccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc--
Q 000050 2088 MDVQSLAKEAAETVTL--VIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-- 2163 (2622)
Q Consensus 2088 ~~vr~~a~~al~~l~~--~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~-- 2163 (2622)
+..-...+..++.++. .++.+.+..++..|+...... .....+-.++..+++. ......+..|+..+.
T Consensus 191 ~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S------~~g~~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS------HLGHSAIRTLCDILRSP 262 (464)
T ss_pred HHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC------ccHHHHHHHHHHHHccc
Confidence 3333566777888776 335577888998888876543 5555667777777752 233567777777773
Q ss_pred CC----ChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHc
Q 000050 2164 DS----DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 2239 (2622)
Q Consensus 2164 d~----d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~ 2239 (2622)
++ +..+...|...++.++-..+++. +|. ++-....++|.|...+.
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~-----------------------------~~~--l~~~~~~vl~sl~~al~ 311 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLWGSGEQG-----------------------------YPS--LPFSPSSVLPSLLNALK 311 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHhccccCC-----------------------------cce--ecccHHHHHHHHHHHHh
Confidence 22 23334444444444433222111 111 11122237777777777
Q ss_pred cCCHHHHHHHHHHHHHHH-hhcChhhhhhhhhhhhHHHHHhh---cCCCC--------HhhHHHH---HHHHHHHHHhcC
Q 000050 2240 SGSAELREQAALGLGELI-EVTSEQSLKEFVIPITGPLIRII---GDRFP--------WQVKSAI---LSTLSIIIRKGG 2304 (2622)
Q Consensus 2240 ~~~~~~r~~aa~~L~~l~-~~~~~~~l~p~v~~i~~~Li~~l---~~~~~--------~~vk~~a---l~~L~~L~~~~~ 2304 (2622)
.+++-+-......+..+. ...+........+.+...+.++. ..... ..++... +..+..+... +
T Consensus 312 ~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~-~ 390 (464)
T PF11864_consen 312 SNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQ-H 390 (464)
T ss_pred CCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhC-C
Confidence 665555445555555555 33332222222233322222221 11111 1233222 2223333333 1
Q ss_pred CCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-hcccChhhHHHHHHHhhh--cCCHhHHHHHHHHHHHH
Q 000050 2305 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQ--VSDAGIREAILTALKGV 2376 (2622)
Q Consensus 2305 ~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~-~~~~~~~~ll~~Ll~~l~--~~d~~vr~~~l~AL~~v 2376 (2622)
.+..-.+.+...|.++...-.+.........-.+.+ -.++.+-.-+..+++.+- +.+..+|-.+++.+.++
T Consensus 391 -~~~g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 391 -DFNGPKDKLFNFFERVHSYLPDSSALLVLFYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred -CcCccHHHHHHHHHHHhccCCHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
Confidence 122123556777766655533332222221111111 123445566667777653 34578898888887653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.44 E-value=3.2 Score=56.57 Aligned_cols=152 Identities=20% Similarity=0.322 Sum_probs=107.6
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHH-HHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhc--c
Q 000050 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL-MNTLISSLAS---SSSERRQVAGRALGELVRKLG--E 1918 (2622)
Q Consensus 1845 il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~l-l~~L~~~L~s---~~~~~R~~A~~~L~~lv~~~~--~ 1918 (2622)
+++-+...++.+..+.|..-+-+|..+....|..-.+.+..- -...++.+.+ -++++|.+|+..|..+++... .
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 344444456777788888888999988876664433333220 0111111222 246899999999999998753 2
Q ss_pred c--hhhhHHHHHhhhcCC-CChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 000050 1919 R--VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2622)
Q Consensus 1919 ~--~l~~llp~L~~~L~d-~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~ 1995 (2622)
. .-..++.+....++| +.+-.|+=+|.+||.+-+......+...-......+...+.|+-++||.+|.-||+++..+
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 2 346778888888888 4788999999999999887765544444455666778889999999999999999999875
Q ss_pred h
Q 000050 1996 A 1996 (2622)
Q Consensus 1996 ~ 1996 (2622)
.
T Consensus 673 ~ 673 (1387)
T KOG1517|consen 673 G 673 (1387)
T ss_pred c
Confidence 4
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=92.08 E-value=2.7 Score=58.95 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=76.9
Q ss_pred hhhHhHHHHHHHHHhh-CCc-----------cccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCc
Q 000050 2444 AARHGSVLVFATFLRH-NPS-----------AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 2511 (2622)
Q Consensus 2444 ~~r~~~~~~L~~~l~~-~~~-----------~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~ 2511 (2622)
..+..+.+++..++.. +.. ......+.+.+...+.......+..-+..++.|+|.+=.
T Consensus 450 ~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~---------- 519 (618)
T PF01347_consen 450 YLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH---------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------
T ss_pred hHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------
Confidence 3556677777777642 111 112233455555555555566677888899999997521
Q ss_pred hhhHhHHHHHHhhcCC---CCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHHhccc
Q 000050 2512 TVVVDILASVVSALHD---DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588 (2622)
Q Consensus 2512 ~~l~~~l~~l~~~l~d---~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~~ 2588 (2622)
...++.+...+.+ .+..+|.+|+.+++.++..+|+.+++ ++=++|....+ +..||.||. ..+++-.
T Consensus 520 ---~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~----~l~~I~~n~~e-~~EvRiaA~---~~lm~~~ 588 (618)
T PF01347_consen 520 ---PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVRE----ILLPIFMNTTE-DPEVRIAAY---LILMRCN 588 (618)
T ss_dssp ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHH----HHHHHHH-TTS--HHHHHHHH---HHHHHT-
T ss_pred ---chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHH----HHHHHhcCCCC-ChhHHHHHH---HHHHhcC
Confidence 2344444444444 48899999999999999998877654 22334444333 344899864 4455543
Q ss_pred ccchhHHHHHHHh
Q 000050 2589 RGSEYIQGAQKFI 2601 (2622)
Q Consensus 2589 ~~~~~~~~~~~~l 2601 (2622)
......+.+...+
T Consensus 589 P~~~~l~~i~~~l 601 (618)
T PF01347_consen 589 PSPSVLQRIAQSL 601 (618)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3334445554444
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=92.04 E-value=9.1 Score=47.45 Aligned_cols=196 Identities=18% Similarity=0.163 Sum_probs=134.0
Q ss_pred hhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHH----hHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchh
Q 000050 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE----HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~----~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~ 1732 (2622)
.+...|.++|...-+..+-..+......+....|.+.+. -..|.++..+....-.||...+..+......+|..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 344567777776666777778888888899999988663 2356677777777889999999999988888899999
Q ss_pred hhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000050 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2622)
Q Consensus 1733 p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~ 1812 (2622)
|.+..++..++.++.|+..++.+.+...+..+...++.+. +...+...+- .+...|..++..+..-+ +....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~---F~~~lwl~ii-~sp~~Rl~al~~l~~~l---~~~~~- 205 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY---FWQCLWLCII-TSPSRRLGALNYLLRRL---PKFQN- 205 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH---HHHHHHHHHh-cCcchhHHHHHHHHHhC---Ccccc-
Confidence 9999999999999999998888888888888887776652 3333333222 23456777776655432 21110
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000050 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV 1872 (2622)
Q Consensus 1813 ~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~ 1872 (2622)
++.....+ .....++.+ -.-++.+++.++.|.+.-|++.+++.+-.-.
T Consensus 206 -------~~~~~~~~----~~~~~~~~~-~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 206 -------DELSLSSE----EQEYCLGPD-PGLLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred -------cccccchH----HHHHhcCCC-ccHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 00000000 112223321 2246778888899999999999988875443
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.98 E-value=41 Score=42.08 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=66.9
Q ss_pred HHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccc--cCChhHHHHHHHHHh-hhccCChhHHHhHHHHHHHHHhhhhhc
Q 000050 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAI--SMSPLFLSILDRLKS-SLKDEKFPLREASTKALGRLLLHQIQS 2506 (2622)
Q Consensus 2430 ~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i--~~~~~~~~i~~~l~~-~~~~~~~~ir~~a~~alg~ll~~~~~~ 2506 (2622)
+++.+..|+.+++.......+++++.+.+....-+ .+.++...+++.+.. +-.+++.....++..|+..+..--.++
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 66677788888776655556677776665433322 345566677777665 667778888888999999876543322
Q ss_pred CCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000050 2507 GPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2507 ~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~ 2545 (2622)
... ....+....+..++..++-|-...+-.++-+..
T Consensus 396 a~~---~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 396 AHF---APAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred hhc---cccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 110 112233344444555566665555555554433
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=91.84 E-value=51 Score=42.89 Aligned_cols=288 Identities=14% Similarity=0.123 Sum_probs=139.3
Q ss_pred HHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccC-ch-HHH
Q 000050 2237 GLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP-FL-PQL 2314 (2622)
Q Consensus 2237 ~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p-~l-~~L 2314 (2622)
.|..++.-+...++..++.++..............+...+...+....+.+....++.+|+.+++.-+ ++. |. ...
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~--~R~~f~~~~~ 186 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE--YRFAFVLADG 186 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch--HHHHHHHccC
Confidence 44556677778888888888754331111112222333444555433345566667788887765321 111 00 012
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHHHhccc------ChhhHHHHHHHhhhcCC-HhHHHHHHHHHHHHHhhcCCC--
Q 000050 2315 QTTFIKCLQDS--TRTVRSSAALALGKLSALST------RVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHAGKS-- 2383 (2622)
Q Consensus 2315 ~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~~~------~~~~ll~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~g~~-- 2383 (2622)
...+...|+.. +..+--.+..|+-.|. +.+ .-..+++.++..++... ..+-.-++..|+.++......
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~ 265 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLT-FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREV 265 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHh-ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccch
Confidence 23333344331 4455556666665542 111 11357777888776543 445555677888888754211
Q ss_pred ---CChHHHH-HHHHHHHHhhcC---CCHHHHHHHHHHHHHHHhhcCc-hHHHHHHHHHH----hhcCCCCchhhHhHHH
Q 000050 2384 ---VSSAVKI-RVYSVLKDLVYH---DDDHVRVSAASILGIMSQCMED-GQLADLLQELL----NLASSPSWAARHGSVL 2451 (2622)
Q Consensus 2384 ---~~~~~~~-~i~~~L~~~l~~---~~~~vr~~aa~~Lg~L~~~~~~-~~~~~~l~~ll----~~~~~~~~~~r~~~~~ 2451 (2622)
....... .+...+. .+.. .|+++.......-..|-..... ..+.++..++. .|.+...... +
T Consensus 266 ~~~~~~~mv~~~l~~~l~-~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~--F--- 339 (429)
T cd00256 266 KKTAALQMVQCKVLKTLQ-SLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK--F--- 339 (429)
T ss_pred hhhHHHHHHHcChHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch--H---
Confidence 1111122 2223332 2332 3566655443333333322211 01344444432 2321111000 0
Q ss_pred HHHHHHhhCCccccCChhHHHHHHHHHhhh-ccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHh---HHHHHHhhcCC
Q 000050 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD---ILASVVSALHD 2527 (2622)
Q Consensus 2452 ~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~-~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~---~l~~l~~~l~d 2527 (2622)
=+++...+.+.++ +++..|.+.+ .++++..-.-|-.=+|.++.+.... +.+.+ .=..+++.++|
T Consensus 340 -----W~EN~~kf~~~~~--~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-----r~i~~~lg~K~~vM~Lm~h 407 (429)
T cd00256 340 -----WRENADRLNEKNY--ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-----KDVVEQLGGKQRVMRLLNH 407 (429)
T ss_pred -----HHHHHHHHHhcch--HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-----HHHHHHcCcHHHHHHHhcC
Confidence 0111122212221 4556666665 3455555555556677777775311 11211 22457778889
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 000050 2528 DSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2528 ~s~dvr~~a~~~l~~~a~ 2545 (2622)
++++||..|+.++..+--
T Consensus 408 ~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 408 EDPNVRYEALLAVQKLMV 425 (429)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999987743
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.81 E-value=44 Score=42.10 Aligned_cols=352 Identities=13% Similarity=0.152 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---HhhcHHhHHhhHHHHHhhccCCChhh
Q 000050 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM---SQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1398 ~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~---~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
.|+..+-.+++...-...-.-.+++..+++++.-.+...--....-++.+. ++-....-..++..++..+..+....
T Consensus 282 va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL 361 (791)
T KOG1222|consen 282 VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDL 361 (791)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHH
Confidence 566666667765543233333567788888886555444333333332221 11111122456677777777777888
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh---hHHhHHHHHHhhc-CCCC
Q 000050 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGL-TDPN 1550 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~ilp~Ll~~l-~d~~ 1550 (2622)
+...+.++..+++...-.-.-.-..++|.+..++++.+. ...|...|-.+.-.-.-+ .+...++.+.+.+ ...+
T Consensus 362 ~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~ 439 (791)
T KOG1222|consen 362 RKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTG 439 (791)
T ss_pred HHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999998888754332222235678888888876432 122333333322100000 1234455555543 2222
Q ss_pred hhHH-----HHHHHHHhcccccc-CChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCC-CcccchHhhhHHH
Q 000050 1551 DHTK-----YSLDILLQTTFVNT-VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGLLLPE 1623 (2622)
Q Consensus 1551 ~~~r-----~al~~L~~~~~~~~-~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~l~~~l~~ll~~ 1623 (2622)
..+. .|+.......-..- .....+..+ +.+.++.+++- ....+.++...-+.. ..+..|...+...
T Consensus 440 ~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~L---M~ra~k~~D~l----LmK~vRniSqHeg~tqn~FidyvgdLa~i 512 (791)
T KOG1222|consen 440 SEVDLALIALCINLCLNKRNAQLVCEGQGLDLL---MERAIKSRDLL----LMKVVRNISQHEGATQNMFIDYVGDLAGI 512 (791)
T ss_pred ceecHHHHHHHHHHHhccccceEEecCcchHHH---HHHHhcccchH----HHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 2222 23332222111110 111222222 22333333321 223334444321110 1233444443332
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhhhcCCh-HHHHHHHHHHHHHHHHhchhHH-
Q 000050 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGTVYF- 1694 (2622)
Q Consensus 1624 L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-------~~~~ll~~Ll~~L~~~~~~-~~r~~a~~~L~~i~~~~g~~~l- 1694 (2622)
+. .|.+.. -..+|+|.++...-.+ .-..++||+...|+..... .........+|.++....-..+
T Consensus 513 ~~---nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Ll 586 (791)
T KOG1222|consen 513 AK---NDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLL 586 (791)
T ss_pred hh---cCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHh
Confidence 22 133333 6788999988743332 1246889998888754322 1223344445555443322222
Q ss_pred --HhHhHHHHHhccC---CChhhHHHHHHHHHHhhhh-hCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000050 1695 --EHILPDIIRNCSH---QRASVRDGYLTLFKYLPRS-LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2622)
Q Consensus 1695 --~~llp~l~~~l~~---~~~~vR~~al~~l~~L~~~-~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv 1765 (2622)
..+++.+++.++. .+..|- ..+..|-.+... ....+.---...-..+...+.|.++.||+.+-.++..+.
T Consensus 587 a~a~~i~tlieLL~a~QeDDEfV~-QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIia 662 (791)
T KOG1222|consen 587 APAKLIDTLIELLQACQEDDEFVV-QIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIA 662 (791)
T ss_pred CccccHHHHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3466666665543 333333 223333333222 111110000112224566777889999998877776554
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.8 Score=55.01 Aligned_cols=75 Identities=31% Similarity=0.408 Sum_probs=53.3
Q ss_pred CcccchHhhhHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhhhcCC-hHHHH
Q 000050 1611 KDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNS-NVERS 1676 (2622)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~----------d~~~~vR~~a~~aL~~L~~~~g~~~---~~~ll~~Ll~~L~~~~~-~~~r~ 1676 (2622)
-.+.+|+..++|.++.++. +.+|.+|..|+..++.+++.++..+ .+.++..+.+.+.+... ....-
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 3478999999999998873 4679999999999999999998763 23444444445544432 33356
Q ss_pred HHHHHHHHH
Q 000050 1677 GAAQGLSEV 1685 (2622)
Q Consensus 1677 ~a~~~L~~i 1685 (2622)
|+..+|+.+
T Consensus 330 GAi~GL~~l 338 (343)
T cd08050 330 GAIVGLSAL 338 (343)
T ss_pred HHHHHHHHh
Confidence 777777654
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.50 E-value=22 Score=48.26 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=70.9
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh--hcHHHH--HHHHHhhcCCCChhHHHHHHHHHHHHH-hhcc--c
Q 000050 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESL--VSELLKGVGDNQASIRRSSAYLIGYFY-KNSK--L 2145 (2622)
Q Consensus 2073 ~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~--~~l~~l--l~~Ll~~l~d~~~~vR~~A~~~L~~l~-~~~~--~ 2145 (2622)
..-+|..+.++...++.++..+...+.++...-.. ..+..+ ++.|+..+.+.+.+++..||.++..+. .... .
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 33456666667677777777777777666532111 112222 667888889999999999999999884 3332 1
Q ss_pred cccccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000050 2146 YLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2622)
Q Consensus 2146 ~l~~~~~~il~~L~~~l~-d~d~~V~~~a~~aL~~l~~~ 2183 (2622)
.+.-...+=++.++.++. -.|.+|++.....|.+|...
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 121111223455666665 36888999998888888654
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.35 E-value=4.6 Score=53.74 Aligned_cols=167 Identities=11% Similarity=0.129 Sum_probs=110.5
Q ss_pred hHHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000050 1576 LLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2622)
Q Consensus 1576 ~i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~ 1654 (2622)
.+.|.|...++- .+.++.....+-+..+.+.. .+++ +.+.++|.|...+++.+..+++.+...++.+++.+.-..
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt-~~e~---~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~ 424 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKT-PPEE---VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF 424 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhC-ChHH---HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH
Confidence 455666555542 23344444444444455543 2223 567899999999999999999999999999999876432
Q ss_pred -chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhh
Q 000050 1655 -FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2622)
Q Consensus 1655 -~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p 1733 (2622)
-..++|.+...........++..+..|++.+++.+..-..-+.++.+.+..+..++.+.-+...++..++......-.-
T Consensus 425 vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev 504 (700)
T KOG2137|consen 425 VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV 504 (700)
T ss_pred HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee
Confidence 3567787766655555566788888999999876665544445556677777788888888888888777554331111
Q ss_pred hHHhHHHHHHhhc
Q 000050 1734 YLQQVLPAILDGL 1746 (2622)
Q Consensus 1734 ~l~~ii~~ll~~L 1746 (2622)
....++|.+....
T Consensus 505 ~~~~VlPlli~ls 517 (700)
T KOG2137|consen 505 MAENVLPLLIPLS 517 (700)
T ss_pred ehhhhhhhhhhhh
Confidence 2244666655543
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=91.31 E-value=4.7 Score=51.84 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhh
Q 000050 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLA----------SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSR 1930 (2622)
Q Consensus 1864 A~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~----------s~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~ 1930 (2622)
.+++..+|..|..-.+.+|+..++|.++.|+- +.+|..|-.|+..+..++...+.. ..+.+..++.+
T Consensus 267 lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 267 LMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred HHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34555566666555567888888888887754 346789999999999999988765 35778888888
Q ss_pred hcCCC--ChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhc
Q 000050 1931 GLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2622)
Q Consensus 1931 ~L~d~--~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2622)
.+.|. ......|++.+|.++....-...+.+.+......+...+.
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 87764 5778889998888764422222223334444444444443
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=91.15 E-value=38 Score=40.78 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=124.3
Q ss_pred HHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHH
Q 000050 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354 (2622)
Q Consensus 2275 ~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~L 2354 (2622)
.|+-.++...+++.....+.+|..++.... .-.|...+++......++...+..+...+..+...+++.-+++..+
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~ 79 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPL 79 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 344446666688889999999999887542 3356666776666666677777777777777777677665677766
Q ss_pred HHhh--h------c--CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhcC
Q 000050 2355 LSSL--Q------V--SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV-YHDDDHVRVSAASILGIMSQCME 2423 (2622)
Q Consensus 2355 l~~l--~------~--~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l-~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2622)
+... + + ...+...+...+++.++...+. ....++..+...+ .+.++..+..+.+.+..++...-
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 6551 1 1 1245556666788888876544 3345566666666 67788888888888888884322
Q ss_pred chHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccC----ChhHHHHHHHHHhhhccCChhHHHhHHH
Q 000050 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFPLREASTK 2494 (2622)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~----~~~~~~i~~~l~~~~~~~~~~ir~~a~~ 2494 (2622)
- ++.+...-+...+..+. |-.....+..++.--|..-.+ ..+...++..+++...+.+......+..
T Consensus 155 v-d~~s~w~vl~~~l~~~~---rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~ 225 (234)
T PF12530_consen 155 V-DFYSAWKVLQKKLSLDY---RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTS 225 (234)
T ss_pred c-cHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHH
Confidence 1 23344443444332222 323333444444333322221 2355678888888877776543333333
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=91.09 E-value=4.1 Score=47.71 Aligned_cols=149 Identities=17% Similarity=0.271 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2622)
Q Consensus 1335 ~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l-~~~~~~~~R~~al~al~~La~~~~~~ 1413 (2622)
.+-+++..+..|.+..+...|.+|..+|.. .-|..++.++ ++.++.+.+ ++-+|-..-...++.+..+...-.-.
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~---dsGlhQLvPY-Fi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRN---DSGLHQLVPY-FIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 344666667777665556677777766532 2233333222 223333222 22223333333444444444444445
Q ss_pred chhHHHHHHHHHHHHc------CCCCH----HHHHHHHHHHHHHHHhhcHHhH---HhhHHHHHhhc-c-CCChhhHHHH
Q 000050 1414 FEPYVIQMLPLLLVAF------SDQVV----AVREAAECAARAMMSQLSAQGV---KLVLPSLLKGL-E-DKAWRTKQSS 1478 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l------~D~~~----~VR~aa~~al~~i~~~l~~~~v---~~ilp~Ll~~L-~-~~~w~~r~~a 1478 (2622)
..||+.+++|.++.|+ ++++. .+|+-|+..++.++++++.... .++.-.+++.+ + .+...+..||
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGa 350 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGA 350 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhh
Confidence 7899999999999875 23332 4999999999999988765421 23333344432 2 2345677888
Q ss_pred HHHHHHHHh
Q 000050 1479 VQLLGAMAY 1487 (2622)
Q Consensus 1479 ~~~L~~la~ 1487 (2622)
+..+..+..
T Consensus 351 lkgls~l~k 359 (450)
T COG5095 351 LKGLSILSK 359 (450)
T ss_pred hhhhhhhch
Confidence 888876654
|
|
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.1e+02 Score=44.89 Aligned_cols=148 Identities=12% Similarity=0.059 Sum_probs=84.8
Q ss_pred hhhHHHHHH-HhcCCCHHHHHHHHHHHHHHHhh--hC--CCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh
Q 000050 1618 GLLLPEVKK-VLVDPIPEVRSVAARAIGSLIRG--MG--EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2622)
Q Consensus 1618 ~~ll~~L~~-~L~d~~~~vR~~a~~aL~~L~~~--~g--~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~ 1692 (2622)
+.++..+.. ...+..|.+|.++.+.+..++-. ++ +...+++-..+...+. +..-.+|..++.+++.+..+.-..
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~-D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLN-DDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHhccccc
Confidence 345555553 33456899999999998887652 22 2234455544545554 433458889999998877643222
Q ss_pred HHHhHhHHHHHhc--cCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000050 1693 YFEHILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1693 ~l~~llp~l~~~l--~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~ 1767 (2622)
............. ...+.....++...++.++-.++-.+--+++..+..+-....+. ..++.++-+++..+-..
T Consensus 1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrt 1679 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRT 1679 (1710)
T ss_pred cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHH
Confidence 1111111111111 12344556788999999999887655445555555444444443 55676666666555443
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.64 E-value=11 Score=50.37 Aligned_cols=167 Identities=17% Similarity=0.141 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~ 1416 (2622)
.+++.+...+...+....+.--..-+..+.+....+.+. ..+++.|....++. +...++.++..+..+++.+. .+
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~-~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~ 423 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVK-EKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VP 423 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHH-HHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HH
Confidence 445555555443333334444444455566666666664 37999999988887 78899999999999999887 23
Q ss_pred HHH-HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1417 YVI-QMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1417 ~v~-~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
.+. .++|.+.. ++...+..|+..+..|+..+++.+....+-..++.++......+.....+.+.+...++...+....
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~e 503 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVE 503 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccccee
Confidence 333 46777655 4567789999999999999999998888777777788888777788888877777776665444211
Q ss_pred hhhhhhHHHHhhhh
Q 000050 1495 QCLPKIVPKLTEVL 1508 (2622)
Q Consensus 1495 ~~L~~ivp~L~~~L 1508 (2622)
.....++|.+..+.
T Consensus 504 v~~~~VlPlli~ls 517 (700)
T KOG2137|consen 504 VMAENVLPLLIPLS 517 (700)
T ss_pred eehhhhhhhhhhhh
Confidence 11234455544444
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=90.58 E-value=8.4 Score=53.42 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=92.5
Q ss_pred HHHHHHHHHhh--cCchHHHHHHHHHHhh-cCCCCchhhHhHHHHHHHHHhh-CCccccC-ChhHHHHHHHHH----hhh
Q 000050 2411 AASILGIMSQC--MEDGQLADLLQELLNL-ASSPSWAARHGSVLVFATFLRH-NPSAISM-SPLFLSILDRLK----SSL 2481 (2622)
Q Consensus 2411 aa~~Lg~L~~~--~~~~~~~~~l~~ll~~-~~~~~~~~r~~~~~~L~~~l~~-~~~~i~~-~~~~~~i~~~l~----~~~ 2481 (2622)
++..+..+... .|..++.+.+.+++.. ...+....+.++.+++..++.. +-..-.. ....+++.+.+. +..
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 34444444333 3444444434344331 1122334556677777777642 2111000 112233444444 333
Q ss_pred ccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHH
Q 000050 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPA 2561 (2622)
Q Consensus 2482 ~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~ 2561 (2622)
...+...+...+.|+|.+-. | .....+.+++.+-...+..+|.+|+.+++.++..+|..+++.+- +
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~------~----~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~----~ 521 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGH------P----SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLL----P 521 (574)
T ss_pred hcCCchheeeHHHhhhccCC------h----hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHH----H
Confidence 44566677788999996421 1 12334444444444567899999999999999999988765332 2
Q ss_pred HHhhhcCCcchhhchhHHHHHHHhcccccchhHHHHHHHh
Q 000050 2562 LAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601 (2622)
Q Consensus 2562 l~~~~~~~~~~vk~aae~a~~~~~~~~~~~~~~~~~~~~l 2601 (2622)
+|... ..+..||.| |+..+++.......++.+.+.+
T Consensus 522 i~~n~-~e~~EvRia---A~~~lm~t~P~~~~l~~ia~~l 557 (574)
T smart00638 522 IYLNR-AEPPEVRMA---AVLVLMETKPSVALLQRIAELL 557 (574)
T ss_pred HHcCC-CCChHHHHH---HHHHHHhcCCCHHHHHHHHHHH
Confidence 33222 245558887 4555556533344555555555
|
|
| >KOG1837 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.48 E-value=56 Score=47.76 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=60.1
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcCCcchhhchhHH
Q 000050 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579 (2622)
Q Consensus 2514 l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~ 2579 (2622)
+.+++...+....+++...|..|+..+..+...-++.+.+++++++|.|-+.+.|.+..|...+-.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 677777888888889999999999999999999999999999999999999999999999877665
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=89.98 E-value=91 Score=42.51 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=90.9
Q ss_pred chhhHHHHHHHHccCCH-HHHHHHHHHHHHHHhhcChhhhhhhh-hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcC
Q 000050 2227 LQPLLPIFLQGLISGSA-ELREQAALGLGELIEVTSEQSLKEFV-IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~-~~r~~aa~~L~~l~~~~~~~~l~p~v-~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~ 2304 (2622)
+-.-+|.|++.+.+++. +.-..+..||..++ .++ +.-+..+ ...++.|.+++.+ .......++..+..++...+
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~-~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSP-EGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCc-HhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcc
Confidence 44578999999988776 88889999999999 333 3333333 2334556666554 33456666666666665544
Q ss_pred CCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCC-
Q 000050 2305 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS- 2383 (2622)
Q Consensus 2305 ~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~- 2383 (2622)
....+--++ .+..+++.+-..+.......+-.+++-|..++...+..
T Consensus 172 ~~~~~~~~~--------------------------------~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~ 219 (543)
T PF05536_consen 172 QKSWAEDSQ--------------------------------LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILP 219 (543)
T ss_pred hhhhhhhHH--------------------------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccc
Confidence 211100000 01112222222222222334455566666666555311
Q ss_pred ----CChHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhcCc
Q 000050 2384 ----VSSAVKIRVYSVLKDLVYHD-DDHVRVSAASILGIMSQCMED 2424 (2622)
Q Consensus 2384 ----~~~~~~~~i~~~L~~~l~~~-~~~vr~~aa~~Lg~L~~~~~~ 2424 (2622)
.++.....+...+...+.++ ...-|..+..+.+.+....+.
T Consensus 220 ~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 220 LESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred cccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 23456677777777777765 566777777777777766554
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.3 Score=47.27 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=85.8
Q ss_pred chhHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhccCCChhh
Q 000050 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~------------------D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
+.|++.+++|.++.-.. |.--.+|++|.+++..+.+..... .+..++..+..+|.+ +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 45677888898887543 223589999999999998865443 467789999999988 8899
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhc----CC--------CHHHHHHHHHHHHHHhhhc
Q 000050 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT----DT--------HPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~----D~--------~~~VR~aA~~aL~~l~~~~ 1530 (2622)
|.-+...+..++..+|..+...+..+++.+...|+ +. ..+...++.+++..+...+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999888774 21 2334445566666664444
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.77 E-value=13 Score=45.81 Aligned_cols=182 Identities=20% Similarity=0.168 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---C-chhhHHHH
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N-FPDLVSWL 1662 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~-~~~ll~~L 1662 (2622)
+.+.+.|..|.+-+..+++.+....++.++ . .+..+...+++.+..+|+.|+..+|+.+..-+.. . -...++.|
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~-g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISL-G-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhc-c-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 346788888888888888776554444433 2 3334444889999999999999999999865432 1 12367788
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHHhch--hHHHhH--hHHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHH
Q 000050 1663 LDALKSDNSNVERSGAAQGLSEVLAALGT--VYFEHI--LPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2622)
Q Consensus 1663 l~~L~~~~~~~~r~~a~~~L~~i~~~~g~--~~l~~l--lp~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~ 1736 (2622)
+..+.++.+..+|..+..+++.+++.... ..+-.+ ...+...+++ .+...+.-++.++..+...-..+-.-.-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 88888877777888999999888875432 222110 2233444444 45566677777777776543321110001
Q ss_pred hHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 000050 1737 QVLP-AILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2622)
Q Consensus 1737 ~ii~-~ll~~L~d~~~~VR~~al~al~~lv~~~~~ 1770 (2622)
..++ .+.....-.+.++++.++.+.-..+..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 1111 122222333456777777776665554433
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.8 Score=43.14 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhH
Q 000050 2113 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 2192 (2622)
Q Consensus 2113 ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l 2192 (2622)
.+...+..+.|+.+.+|..++..|..+.+... ......+.++..++..+.|+|+-|.-+|..+|..++...+...++.+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 34556667789999999999999999987654 23345688899999999999999999999999999998887776666
Q ss_pred HHH
Q 000050 2193 IKV 2195 (2622)
Q Consensus 2193 v~~ 2195 (2622)
++.
T Consensus 83 ~~~ 85 (92)
T PF10363_consen 83 LDE 85 (92)
T ss_pred HHH
Confidence 554
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.73 E-value=17 Score=46.67 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHH----hhChhh
Q 000050 1884 PVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKSQ 1958 (2622)
Q Consensus 1884 ~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~----~~~~~~ 1958 (2622)
+.+...+...+. +.++........+++..+..++..+-+.++..+.+++.++.+.+|..-+..+++++. ......
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~ 100 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKF 100 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHH
Confidence 344444444444 578888889999999888888677788999999999999999999999999999876 222233
Q ss_pred HHHhHHhHHHHHHHHhcCCcH
Q 000050 1959 LLSFMDELIPTIRTALCDSIL 1979 (2622)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~ 1979 (2622)
..++++.++..+.+....+.+
T Consensus 101 ~~~~~~~L~~~~~~~~~~p~~ 121 (339)
T PF12074_consen 101 AEPFLPKLLQSLKEASANPLQ 121 (339)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 344555555555555555433
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=88.69 E-value=7 Score=48.47 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=108.5
Q ss_pred HHHHHHHh-hcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCc----c--CchHHHHHHHHHHhC
Q 000050 2251 LGLGELIE-VTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL----K--PFLPQLQTTFIKCLQ 2323 (2622)
Q Consensus 2251 ~~L~~l~~-~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l----~--p~l~~L~~~llk~L~ 2323 (2622)
..+..++. ..+...+..+..-+++|++.++.|. +..+|...+.+|..++.+.+... + ...+.+.+.+.+++.
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLY 176 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhh
Confidence 34444444 6666778888899999999999885 88999999999999998876543 1 224556777777876
Q ss_pred --------CCCHHHHHHHHHHHHHHHhc------cc---ChhhHHHH-HHHhhh-cC---CHhHHHHHHHHHHHHHhhcC
Q 000050 2324 --------DSTRTVRSSAALALGKLSAL------ST---RVDPLVGD-LLSSLQ-VS---DAGIREAILTALKGVLKHAG 2381 (2622)
Q Consensus 2324 --------d~~~~vR~~Aa~aLg~L~~~------~~---~~~~ll~~-Ll~~l~-~~---d~~vr~~~l~AL~~vi~~~g 2381 (2622)
+.+..+=..|..|+-.|... .+ ..+.++.+ +++.+. .. ...++...++.+..++...|
T Consensus 177 ~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 177 YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 45667777888888887443 12 24445544 555542 22 37888999999999999888
Q ss_pred CCCChHHHHHHHHHHHHhhcCC
Q 000050 2382 KSVSSAVKIRVYSVLKDLVYHD 2403 (2622)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~ 2403 (2622)
... ..+.++++..+.+.+.++
T Consensus 257 i~~-~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 257 ISS-VKHLQRIIPVLSQILENP 277 (282)
T ss_pred cHH-HHHHHHHHHHHHHHhcCC
Confidence 754 578888888888777664
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=88.68 E-value=6.1 Score=50.29 Aligned_cols=115 Identities=21% Similarity=0.311 Sum_probs=80.8
Q ss_pred cCchhhHHHHHHHHccC-------CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhc-----C----CCCHhh
Q 000050 2225 KALQPLLPIFLQGLISG-------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG-----D----RFPWQV 2288 (2622)
Q Consensus 2225 ~~l~~ilp~ll~~L~~~-------~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~-----~----~~~~~v 2288 (2622)
.++.+++|-|.+.+.++ +...-...+.++..+...-. =.+.||+-+++++++.++- . ..+|.+
T Consensus 206 ~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 206 PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 35556666666554432 23333445566666666544 4678999999988886652 1 246899
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Q 000050 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 2340 (2622)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L 2340 (2622)
|..|...|+.++++.+.......|.+..++.+.|.|+ .....--|..+|+.+
T Consensus 285 Rd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 285 RDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999999999999999887777789999999999987 344456666666544
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=88.30 E-value=3.3 Score=41.37 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=66.2
Q ss_pred HHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHH
Q 000050 2350 LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD 2429 (2622)
Q Consensus 2350 ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~ 2429 (2622)
.+.+.+..+.++...+|...+.-|+.++.+.. ......+.++.++...+.|+|+-+.-+|..++..|+...|+..+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 35566777777778888888888888887655 2345678899999999999999999999999999999999755555
Q ss_pred HHHHHH
Q 000050 2430 LLQELL 2435 (2622)
Q Consensus 2430 ~l~~ll 2435 (2622)
+++.+.
T Consensus 82 L~~~y~ 87 (92)
T PF10363_consen 82 LLDEYA 87 (92)
T ss_pred HHHHHh
Confidence 555443
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.71 E-value=37 Score=46.15 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=99.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH-------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-------QMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~-------~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2622)
.++..-..+++..++...-+++.-++..+.-+.+. +..|+. ..+|.++.++..+++.|-.++..+++.+...
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 34444344555555788888888888888866553 444443 3568999999988888888888999988776
Q ss_pred hcHHhH--HhhHHHHHhhccC------CChhhHHHHHHHHHHHHhhCchhhhhhhh-hhHHHHhhhhcC-CCHHHHHHHH
Q 000050 1451 LSAQGV--KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTD-THPKVQSAGQ 1520 (2622)
Q Consensus 1451 l~~~~v--~~ilp~Ll~~L~~------~~w~~r~~a~~~L~~la~~~p~~l~~~L~-~ivp~L~~~L~D-~~~~VR~aA~ 1520 (2622)
.....+ +..+|.|++.|-+ -.|.+-...|..|..|....+..-...+. +-++.|..+... .++++-++|.
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs 676 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS 676 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence 655533 7788999988854 24788888888888887543332222221 233444444433 3567777777
Q ss_pred HHHHHHhh
Q 000050 1521 TALQQVGS 1528 (2622)
Q Consensus 1521 ~aL~~l~~ 1528 (2622)
.-|..+..
T Consensus 677 ~vL~~lW~ 684 (717)
T KOG1048|consen 677 SVLDVLWQ 684 (717)
T ss_pred HHHHHHHH
Confidence 77776653
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=87.49 E-value=4.9 Score=41.55 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=64.0
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000050 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2622)
Q Consensus 1378 ~i~~~L~~~l~~---~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2622)
.++..+.+.+.+ +++...|..++.+++.+.+..|..+.++..+++-.+...+..+ .+|+.|..+...++..+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 355555666655 5577888899999999999666655566666666666666555 89999999999999999988
Q ss_pred hHHhhHHHHHh
Q 000050 1455 GVKLVLPSLLK 1465 (2622)
Q Consensus 1455 ~v~~ilp~Ll~ 1465 (2622)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 77766665443
|
; GO: 0004674 protein serine/threonine kinase activity |
| >KOG3961 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.15 E-value=1.2 Score=49.67 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=76.9
Q ss_pred chhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHh---c
Q 000050 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK---G 2303 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~---~ 2303 (2622)
....+|.|.+||...+-.-|-.|-.++.++....+ +.+-|.+++++.||-+.+..+ +.++....|.+|..+... +
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~tr-d~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTR-DDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccc
Confidence 34689999999998887888889999999998887 788899999999999999875 888999999999887763 5
Q ss_pred CCCccCchHHHHHHH
Q 000050 2304 GIALKPFLPQLQTTF 2318 (2622)
Q Consensus 2304 ~~~l~p~l~~L~~~l 2318 (2622)
|..+-||..||.+.+
T Consensus 190 G~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVL 204 (262)
T ss_pred chhhhhHHHHhhhhh
Confidence 678889999988865
|
|
| >KOG1837 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.67 E-value=2e+02 Score=42.54 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=60.8
Q ss_pred cHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHH
Q 000050 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175 (2622)
Q Consensus 2109 ~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~ 2175 (2622)
.++++...++...+++++..|..|+..+..+....+..+...+++.+|.|-++++|.+.+|-..+..
T Consensus 1538 d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1538 DLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999999888655544
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.51 E-value=78 Score=45.76 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=51.5
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hhHHHHHHhhhcCCcchhhchhHHHHHHHhccc
Q 000050 2515 VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588 (2622)
Q Consensus 2515 ~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~~ 2588 (2622)
..+|+.+++.|++.+..|--.++-.|+.+.-++|.. ..+| ...+|.+.+.+..++--+-.-+-.|+--++.-+
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 357888899999999888888888888888888764 2333 447899999988887555444444444444433
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=86.51 E-value=11 Score=46.66 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=97.8
Q ss_pred CCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC---------chhhHHHHHHHhh---h----cCCh
Q 000050 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK---S----DNSN 1672 (2622)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~---------~~~ll~~Ll~~L~---~----~~~~ 1672 (2622)
+...+..+++-++|.+..+++|..+.+|..+..++..+...++... .+-+.+.+...+. + +++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 3356778899999999999999999999999999999999776543 2223333444443 1 1222
Q ss_pred HHHHHHHHHHHHHHHHhc---h----hHHHhHhHH-HHHhccC----CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1673 VERSGAAQGLSEVLAALG---T----VYFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1673 ~~r~~a~~~L~~i~~~~g---~----~~l~~llp~-l~~~l~~----~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
..-..+..++-.++.... . ..+.+++-. ++..+.. +.+.++...+..+..+...+|.....|+..+++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223344455555544321 1 123334333 5555443 248899999999999999999999999999999
Q ss_pred HHHhhcCCCC
Q 000050 1741 AILDGLADEN 1750 (2622)
Q Consensus 1741 ~ll~~L~d~~ 1750 (2622)
.+.+.+.+.+
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999887754
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=86.42 E-value=23 Score=46.43 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=133.9
Q ss_pred hHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHhhcC---c
Q 000050 2349 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH-VRVSAASILGIMSQCME---D 2424 (2622)
Q Consensus 2349 ~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~-vr~~aa~~Lg~L~~~~~---~ 2424 (2622)
.++..|+..+.++|+.-|..+...|..+..+....- .-.+..+...+.+.+.+.+.- --.-..+.+|.+...+. .
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r-~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLR-SFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTH-HHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 577788888888888888888888877776643321 334555566665555443211 11223445555554332 1
Q ss_pred hHHHHHHHH-HHhhcCCCCchhh-HhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000050 2425 GQLADLLQE-LLNLASSPSWAAR-HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2425 ~~~~~~l~~-ll~~~~~~~~~~r-~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
++...++.. ++.....+....- .....++...+...| .+...++..+..+|-..++.-....+.-+..++..
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp------~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP------SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G------GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Confidence 234445544 3444444443221 123345555555544 34567888888888777776666677777777776
Q ss_pred hhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhh----hhhHhhHHHHHHhhhcCC-cchhhchh
Q 000050 2503 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI----MVHVALFGPALAECLKDG-STPVRLAA 2577 (2622)
Q Consensus 2503 ~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v----~~~l~~l~p~l~~~~~~~-~~~vk~aa 2577 (2622)
..+. ++.+....+...+..++++.+..|-..|+...+.-.-. ..+ ...++.+.|+|++..+.. |..||..|
T Consensus 286 ~~~~--~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~--~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a 361 (409)
T PF01603_consen 286 LPPE--EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL--SLISQNSRVILPIIFPALYRNSKNHWNQTVRNLA 361 (409)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH--HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHH
T ss_pred cCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH--HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5432 12244566777888889999999988888765421100 112 223455666666655544 99999999
Q ss_pred HHHHHHHhcccc
Q 000050 2578 ERCAVHAFQLTR 2589 (2622)
Q Consensus 2578 e~a~~~~~~~~~ 2589 (2622)
..++--+.++-.
T Consensus 362 ~~vl~~l~~~d~ 373 (409)
T PF01603_consen 362 QNVLKILMEMDP 373 (409)
T ss_dssp HHHHHHHHTTSH
T ss_pred HHHHHHHHHhCH
Confidence 999888877654
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.02 E-value=25 Score=51.56 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh
Q 000050 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2622)
Q Consensus 1883 l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~ 1958 (2622)
++.-+..+++.+..+++.+|..|...+.+++...... ++|....+..+...|.+..+|...-..+..++..+. ..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~ 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KK 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HH
Confidence 3444566777788889999999999999999776544 344445555567779999999999999998887765 56
Q ss_pred HHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000050 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2622)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~ 1991 (2622)
+.+|++.++|...-...|.+..|-.+|...|..
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 789999999999999999988887777665543
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=85.86 E-value=9.5 Score=39.50 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHH
Q 000050 1897 SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2622)
Q Consensus 1897 ~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2622)
.+...|..+.++++++++..|+. +.|++.-.|...+..+ +.|..++.+-..++...+.+.+.+.+++++..+.+.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999944433 3566666666666544 899999999999999999988888888887777654
Q ss_pred h
Q 000050 1974 L 1974 (2622)
Q Consensus 1974 L 1974 (2622)
.
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 3
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=85.19 E-value=17 Score=47.70 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=68.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHH--HHHHhcCCCcc
Q 000050 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALK 2308 (2622)
Q Consensus 2231 lp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~ 2308 (2622)
+..++.....++..-...-..-+..+....+++.+.+....+..-+.+.+... +.+|-..|+..+. .+..-+ .
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li----~ 331 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLI----S 331 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHH----H
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHH----H
Confidence 33333333334443333456778888888888888888888877777887764 7778777877765 223322 2
Q ss_pred CchHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHhccc
Q 000050 2309 PFLPQLQTTFIKCLQD-----STRTVRSSAALALGKLSALST 2345 (2622)
Q Consensus 2309 p~l~~L~~~llk~L~d-----~~~~vR~~Aa~aLg~L~~~~~ 2345 (2622)
.+-..+.+.+...+.. -|..||..|..++..+..+++
T Consensus 332 ~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 332 QNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp CTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred hChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 3334455555555433 389999999999999887664
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=83.91 E-value=1.1e+02 Score=36.94 Aligned_cols=49 Identities=12% Similarity=-0.039 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHhhcc-CCCchHHHHHHHHHHHHHH
Q 000050 1754 RDAALGAGHVLVEHYATTSLPLLLPAVEDGI-FNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1754 R~~al~al~~lv~~~~~~~i~~llp~l~~~l-~d~~~rvR~~a~~ll~~ll 1803 (2622)
..+...+.+.++...+. ....+++.+...+ .+.+..++..+++.+..++
T Consensus 101 ~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 101 LISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 33444566666666555 4455777777777 6777778888888888886
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=83.70 E-value=19 Score=46.72 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=100.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC---CCHhhHHHHHHHHHHHHHhcCCC
Q 000050 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSAILSTLSIIIRKGGIA 2306 (2622)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~---~~~~vk~~al~~L~~L~~~~~~~ 2306 (2622)
.+.-+.+.++.+++..|..|+.+|.. ..|-..+-||+..++ -..+.-. .+-......+.....|++.-..+
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T---DsGL~~LlPyFv~fI---ae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET---DSGLQQLLPYFVTFI---AEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc---CccHHHHHHHHHHHH---hhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 45555666777888888888777654 444344555544332 2221111 13444555666666777776778
Q ss_pred ccCchHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHHhc-ccChh----hHHHHHHHhhhcC--CHhHHHHH
Q 000050 2307 LKPFLPQLQTTFIKCL----------QDSTRTVRSSAALALGKLSAL-STRVD----PLVGDLLSSLQVS--DAGIREAI 2369 (2622)
Q Consensus 2307 l~p~l~~L~~~llk~L----------~d~~~~vR~~Aa~aLg~L~~~-~~~~~----~ll~~Ll~~l~~~--d~~vr~~~ 2369 (2622)
+.||+.+|++.++.|+ .|.++.+|.-|+..++.++.- ....+ .++..+...+.+. .....+.+
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 9999999999998876 334688999999999988542 22222 2333444444443 46788888
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 000050 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403 (2622)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~ 2403 (2622)
+..|.++....-..+--+....++..+...+...
T Consensus 362 i~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~ 395 (576)
T KOG2549|consen 362 IAGLSELGHEVIRTVILPNLKEYNERLQSVLDVE 395 (576)
T ss_pred HHHHHHhhhhhhhheeccchHHHHHHhhhhcccc
Confidence 8888877654322221233344455554444443
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=83.59 E-value=1.9e+02 Score=39.54 Aligned_cols=189 Identities=20% Similarity=0.235 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCCh
Q 000050 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAW 1472 (2622)
Q Consensus 1394 ~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w 1472 (2622)
..+.-|+-.+.+++....-.-.+-+..-+|.++..+..... .+-+-|..++..++.. +.+-+
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~--------------- 134 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAK--------------- 134 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHH---------------
Confidence 44555666666666411111245566778888888765554 4444455555444311 11111
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChh
Q 000050 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDH 1552 (2622)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~ 1552 (2622)
.+.. .+.++.+.+.+.+ ++...+.|...|..+....+...+..
T Consensus 135 -------------------aLl~--~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~--------------- 177 (543)
T PF05536_consen 135 -------------------ALLE--SGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE--------------- 177 (543)
T ss_pred -------------------HHHh--cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh---------------
Confidence 1111 2345555555555 66778888888887766543111000
Q ss_pred HHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCC-C---CcccchHhhhHHHHHHHh
Q 000050 1553 TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-P---KDMIPYIGLLLPEVKKVL 1628 (2622)
Q Consensus 1553 ~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~---~~l~~~l~~ll~~L~~~L 1628 (2622)
....+..+++.+.+.+.......|-..+..++.+....+. + ..-....+.+...+...+
T Consensus 178 -----------------~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 178 -----------------DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred -----------------hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 0011112333333333333334555667777776654310 0 112235667778888887
Q ss_pred cC-CCHHHHHHHHHHHHHHHhhhCCC
Q 000050 1629 VD-PIPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1629 ~d-~~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
.+ ..+.-|..+....+.+....|.+
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 75 46788999999999999998865
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.82 E-value=18 Score=45.37 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=95.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhH
Q 000050 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSI 1924 (2622)
Q Consensus 1849 L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~l 1924 (2622)
++......+..||+.|+..+..+..+.|..+..++-.+++.+.....|.+..+|....+.+..++...... ..+-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 33445788999999999999999998888888788888899999999999999999999998877655443 34566
Q ss_pred HHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHH
Q 000050 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2622)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2622)
++.+..++....+++|..+...+.-++..+++........ +++.+...
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~-il~n~~d~ 190 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK-ILENFKDV 190 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH-HHHHHHHH
Confidence 7777778888899999999999998888776644433322 44444433
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.81 E-value=57 Score=39.48 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=55.6
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhcCC----hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000050 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
.+++++.+.+|.||.+|+.-+-.+... +- .+-...++.+.+.+.++.. .+.|..++.+..--..+....++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467789999999999999877766544 21 1224567777777776654 33333333321000001111222233
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhh
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~ 1605 (2622)
..+...+.+..+..-...|..+.|+.+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 444444455555555566677777655
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=82.52 E-value=12 Score=38.52 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=62.1
Q ss_pred cHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000050 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~---~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2622)
.++..+.+.+.|.+ +...|..++.+++.+.+..|.....+..++.-.+...+.. ++.|..|..+...+...+++.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHH
Confidence 35555555555543 5677889999999999988766666666666666666754 479999999999999999887
Q ss_pred hHHhhHHHH
Q 000050 1455 GVKLVLPSL 1463 (2622)
Q Consensus 1455 ~v~~ilp~L 1463 (2622)
.+..++...
T Consensus 89 ~l~~ll~~~ 97 (107)
T smart00802 89 ELGPLLDQI 97 (107)
T ss_pred HHHHHHHHH
Confidence 766555443
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.17 E-value=1.3e+02 Score=36.76 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=91.3
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHH
Q 000050 2393 YSVLKDLVYH-DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFL 2471 (2622)
Q Consensus 2393 ~~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~ 2471 (2622)
++.+.++++| .+.++|..+-.|+.-|....+.+.... .|...+..+
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs---------------------------------~IV~~gg~~ 331 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKS---------------------------------TIVEKGGLD 331 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHH---------------------------------HHHHhcChH
Confidence 3456667777 466778677666665554444322211 111122334
Q ss_pred HHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchh------hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000050 2472 SILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV------VVDILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2472 ~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~------l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~ 2545 (2622)
.++..+..+. ++|.+...+..++..+..-. |+.... ..-.++.+-..+ ....|.|.+.+++|.++.
T Consensus 332 ~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~----pdhsa~~ie~G~a~~avqAmkahP--~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 332 KIITLALRHS--DDPLVIQEVMAIISILCLRS----PDHSAKAIEAGAADLAVQAMKAHP--VAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHHHhcC----cchHHHHHhcchHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHH
Confidence 4444444332 45566666666666554432 221111 112233333332 245899999999999999
Q ss_pred hCchhhhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHH
Q 000050 2546 ANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHA 2584 (2622)
Q Consensus 2546 ~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~ 2584 (2622)
+..+.-.+.++.=++.|....+..+..++.+|-.|+-.+
T Consensus 404 rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 404 RSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 887776778888899999999999999998888887665
|
|
| >KOG1848 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.92 E-value=52 Score=47.25 Aligned_cols=217 Identities=17% Similarity=0.138 Sum_probs=124.8
Q ss_pred CCCCHHHHHHHHhhhHhhHhhhccch---HHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHhh----hCccchhhhcH
Q 000050 1310 NTPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKG----FGISSLKKYGI 1379 (2622)
Q Consensus 1310 ~~~~~~Vq~~a~~~L~~lv~~~~~~~---~~~i~~Ll~~L~~~~---~~~~r~~Aa~~L~~l~~~----lg~~~l~~~~i 1379 (2622)
..+--+|+....+|+-.++...++.. -..+-+++..+.+.. +...-+.+..+|..+... ++.+.+. .+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~--~l 929 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL--DL 929 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH--HH
Confidence 34445777777788877777666532 122334444444432 223334455555555432 2233332 67
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh-------H--------------------HHHHHHHHHHHcCCC
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP-------Y--------------------VIQMLPLLLVAFSDQ 1432 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~-------~--------------------v~~ilp~ll~~l~D~ 1432 (2622)
++.+..+...+.|-+.--.|+-.|-.+.+.+.+.+.. | -.-++..+.++..|.
T Consensus 930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 7777777766656666667777777776655432111 1 113455666777899
Q ss_pred CHHHHHHHHHHHHHHHH----hhcHHhH----HhhHHHHHhhcc---CCChhhHH-------HHHHHHHHHHhhCchhhh
Q 000050 1433 VVAVREAAECAARAMMS----QLSAQGV----KLVLPSLLKGLE---DKAWRTKQ-------SSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1433 ~~~VR~aa~~al~~i~~----~l~~~~v----~~ilp~Ll~~L~---~~~w~~r~-------~a~~~L~~la~~~p~~l~ 1494 (2622)
.+.||..|.+++-+++. .+++..+ -.++-+++++-. -++|..+. ..+..++.++...++++.
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999998877766 3444333 233333333221 13464433 367778888876666544
Q ss_pred hhh---------hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1495 QCL---------PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1495 ~~L---------~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
..+ ..++..+.....|.++++.-+|.++++.+..
T Consensus 1090 ~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1090 LLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 321 2233334445568889999999998887754
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=81.60 E-value=1.3e+02 Score=38.86 Aligned_cols=231 Identities=13% Similarity=0.101 Sum_probs=141.2
Q ss_pred hHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHH-----HHHHhhc--CCCHHHHHHHHHHHHHHHhh
Q 000050 2349 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYS-----VLKDLVY--HDDDHVRVSAASILGIMSQC 2421 (2622)
Q Consensus 2349 ~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~-----~L~~~l~--~~~~~vr~~aa~~Lg~L~~~ 2421 (2622)
.+.+.+...+-+.+.++|.+.++.++.++... .....+.. ++...+. ...+.-|..|.+.+..+...
T Consensus 25 ~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~------~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 25 FFGERIQCMLLSDSKEVRAAGYRILRYLISDE------ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI 98 (371)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH------HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh
Confidence 34455554443344889999999999988642 12222221 2222222 23566788999999888776
Q ss_pred c--CchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHH
Q 000050 2422 M--EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499 (2622)
Q Consensus 2422 ~--~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~l 2499 (2622)
. +.+--..+++.+..-....+...|..+..++..+.-.+|+.+...+....+.+.+.+ ....+.+..+.++-++
T Consensus 99 ~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~~~~~~~~l~~~lL~l 174 (371)
T PF14664_consen 99 KKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----GSFSISESLLDTLLYL 174 (371)
T ss_pred cCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----ccHhHHHHHHHHHHHH
Confidence 2 221122344444443344555567778889999999999888766665555555554 3334666666666666
Q ss_pred HhhhhhcC-CCCchhhHhHHHHHHhh----cCCCCH-HHHHHHHHHHHHHHhhCchhh---hhhHhhHHHHHHhhhcCCc
Q 000050 2500 LLHQIQSG-PANTTVVVDILASVVSA----LHDDSS-EVRRRALSALKSVAKANPSAI---MVHVALFGPALAECLKDGS 2570 (2622)
Q Consensus 2500 l~~~~~~~-~~~~~~l~~~l~~l~~~----l~d~s~-dvr~~a~~~l~~~a~~~~~~v---~~~l~~l~p~l~~~~~~~~ 2570 (2622)
+.....+. .-..-++..+++++... .++++. +--+.+..++.++-+.-|-.+ .+-. .-+..+...++.++
T Consensus 175 Ld~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~ 253 (371)
T PF14664_consen 175 LDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPN 253 (371)
T ss_pred hCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCC
Confidence 66643321 11113455666666665 333332 355666777777776544432 1111 34677888888999
Q ss_pred chhhchhHHHHHHHhccccc
Q 000050 2571 TPVRLAAERCAVHAFQLTRG 2590 (2622)
Q Consensus 2571 ~~vk~aae~a~~~~~~~~~~ 2590 (2622)
..+|.+...-+..+|++...
T Consensus 254 ~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 254 PEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred HHHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999884
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.47 E-value=13 Score=46.48 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=91.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccch---hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHh
Q 000050 1889 TLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2622)
Q Consensus 1889 ~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~---l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ 1965 (2622)
.++..+...+..+|..|...+.++........ +..+++-+.....|.+..+|.+....+..++-..+++.+.++..-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 34455688899999999999999987744332 345556666677899999999999888887777777778889999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000050 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2622)
Q Consensus 1966 ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~ 2001 (2622)
+++.+..++....+++|..+...+..+...+++...
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 999999999999999999999999998887766443
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.29 E-value=1.1e+02 Score=45.41 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=86.5
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHH----HHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccccc
Q 000050 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES----LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2622)
Q Consensus 2073 ~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~----ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~ 2148 (2622)
+.-+..+++.+...|+..+..+...+..++...+.+.... ......+...|.+..+|..+...+..+....+..++
T Consensus 40 dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 40 DSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556677778888899999989888887655443333 334455556799999999999999999888888999
Q ss_pred ccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 000050 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2622)
Q Consensus 2149 ~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~ 2182 (2622)
+|+..+++...-...|.+..|-.+|...+.....
T Consensus 120 p~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 9999999999988889998888888777776554
|
|
| >KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.31 E-value=1.7e+02 Score=36.78 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=133.3
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHH
Q 000050 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2622)
Q Consensus 2116 ~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~ 2195 (2622)
.+++..+. +...++.|.+.++.++++.+ ....+.+.+-+.+++|.|..||..|..-|-.+++. +.++.+...
T Consensus 29 ~il~~~k~-~~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~ 100 (460)
T KOG2213|consen 29 GILKAVKG-TSKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDV 100 (460)
T ss_pred HHHHHhhc-chHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHH
Confidence 34444443 34556778889999998654 23345666777788899999999888777777654 566666666
Q ss_pred HHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhh-hhhH
Q 000050 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI-PITG 2274 (2622)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~-~i~~ 2274 (2622)
+.|.++...-. -|+.....++..+|+.+..-|..=+.-.+.+-+..-+. .|+.
T Consensus 101 l~qLLnk~sl~--------------------------~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~ 154 (460)
T KOG2213|consen 101 LVQLLNKASLT--------------------------GLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVD 154 (460)
T ss_pred HHHHHHHHHHH--------------------------HHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHH
Confidence 66666532211 01111111345555555444433332233233322221 1112
Q ss_pred HHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHH---HH---HHH--hCCCCHHHHHHHHHHHHHHHhc---
Q 000050 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQT---TF---IKC--LQDSTRTVRSSAALALGKLSAL--- 2343 (2622)
Q Consensus 2275 ~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~---~l---lk~--L~d~~~~vR~~Aa~aLg~L~~~--- 2343 (2622)
-.-..+.|- +.+--..-+..|+.+-.-.+ ..+ -.+|++ .+ ... +.-++...-.+-..|+-.-+-+
T Consensus 155 eikkal~dV-tgeef~lfm~~L~~lk~~~~--k~~-~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFar 230 (460)
T KOG2213|consen 155 EIKKALEDV-TGEEFTLFMDILASLKSLQT--KAG-EARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFAR 230 (460)
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHhhhcccC--CCC-HHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhc
Confidence 222233332 22222222222222211000 001 011211 11 111 2223455555555555443211
Q ss_pred ccChhhHHHHHHHhh--hcCC---HhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHH
Q 000050 2344 STRVDPLVGDLLSSL--QVSD---AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILG 2416 (2622)
Q Consensus 2344 ~~~~~~ll~~Ll~~l--~~~d---~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg 2416 (2622)
+..-..++.-+...+ ...+ .+.+-..|++|+|+.............++|+++|.+.+--+ .+......++|+-
T Consensus 231 gapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvECll 310 (460)
T KOG2213|consen 231 GAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLL 310 (460)
T ss_pred CCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHH
Confidence 111123444444332 1122 56777899999999876533222456788888888776543 4556667788887
Q ss_pred HHHhhcC
Q 000050 2417 IMSQCME 2423 (2622)
Q Consensus 2417 ~L~~~~~ 2423 (2622)
.+.+.++
T Consensus 311 y~~h~Lg 317 (460)
T KOG2213|consen 311 YALHHLG 317 (460)
T ss_pred HHHHHHh
Confidence 7665443
|
|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.01 E-value=2.7e+02 Score=38.96 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=66.7
Q ss_pred HHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhhe-eeecC-CchHHHHHH--------HHHHHh-cCCCCCC
Q 000050 1062 ALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW-IAVHD-PEKSVAEAA--------EDIWDR-YGYDFGT 1130 (2622)
Q Consensus 1062 ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~la--------~~~w~~-~~~~~~~ 1130 (2622)
.++..+|+|+..++.||++|.+.... -.|...+. +.... .+-..|-.| .++|++ ++....+
T Consensus 9 ~~~~aqs~~p~s~k~AE~~Lrqwe~q--------~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 9 QLDLAQSPDPPSVKCAEERLRQWEKQ--------HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HHHhhcCCCCchHhhHHHHHHhhhcc--------ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 56888999999999999999875322 12332221 11111 222233332 368986 4433333
Q ss_pred C----h-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Q 000050 1131 D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSL 1175 (2622)
Q Consensus 1131 ~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~ 1175 (2622)
+ + ..++..+-+.+....-..|+|++.++. .+|+-|++++..|.+.
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~ 131 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSL 131 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhh
Confidence 3 3 667777766666676688999988886 5777777777777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2622 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-27 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-23 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-23 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 421 bits (1084), Expect = e-125
Identities = 100/472 (21%), Positives = 190/472 (40%), Gaps = 18/472 (3%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 1386
S ++ ++ L +L R A +A + G I L +G
Sbjct: 4 HHHSDSQQSIKVLEELFQKL-SVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446
+ D+ +A A+ A L EPY++Q++P + ++ ++ A +
Sbjct: 63 IKDKKTAANAMQAV-AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLIS 121
Query: 1447 MMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
+++ ++ +K +LP L + + W+ K + + AM A Q++ +P+++P L+
Sbjct: 122 IVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLS 181
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
E + DT +V++A A+ + + N +I +P+L+ + DP ++ +L TTF
Sbjct: 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTF 240
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
V V +L+++VP++ RGL ER K+K+A I+ NMC LV +P+ + P++G LLP +K
Sbjct: 241 VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300
Query: 1626 KVLVDP-IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684
PE R V RA+ +L R +G D + L A + S Q ++E
Sbjct: 301 SNFATIADPEAREVTLRALKTLRR-VGNVGEDDAIPELSHA-------GDVSTTLQVVNE 352
Query: 1685 VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK-----YLPRSLGVQFQNYLQQVL 1739
+L I+ + I R + Y+ L + +
Sbjct: 353 LLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEF 412
Query: 1740 PAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI 1791
+ D + ++ +L R
Sbjct: 413 RKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRY 464
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 9e-27
Identities = 65/404 (16%), Positives = 139/404 (34%), Gaps = 46/404 (11%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR 1709
+ ++ L L ++ R A ++ L + EH ++ + ++
Sbjct: 9 SQQSIKVLEELFQKLSVATAD-NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKK 67
Query: 1710 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769
+ +L + Y+ Q++PAI ++++ ++ A +V
Sbjct: 68 TAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127
Query: 1770 TTSLPLLLPAVEDGIFNDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828
++ LLP + + I N W+ + + + ++ + E
Sbjct: 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE------------ 175
Query: 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK---TIVANTPKTLKEIMPV 1885
+I VL +E + D V+ AA V N K+I
Sbjct: 176 ----LIPVL-----SETM-------WDTKKEVKAAATAAMTKATETVDN-----KDIER- 213
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1945
+ +LI +A + V V ++ L ++P+LSRGL + ++ +
Sbjct: 214 FIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV 273
Query: 1946 GLSEVMAS--AGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGMQAID 2002
+ + M + F+ +L+P +++ + E RE A TL + G D
Sbjct: 274 -IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR-VGNVGED 331
Query: 2003 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVH 2046
+ +P L HA + T + LK ++ + +
Sbjct: 332 DAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGA 375
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 7e-15
Identities = 37/256 (14%), Positives = 86/256 (33%), Gaps = 40/256 (15%)
Query: 1874 NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS--IIPILSRG 1931
+ + + ++ L L+ ++++ R + + L++G
Sbjct: 3 HHHHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1932 LKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990
+KD +A+ S + ++ +L+P I T + E++ A
Sbjct: 63 IKDKKTAANAMQAV--AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLI 120
Query: 1991 TLFKSAGMQAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAVLPHILPKLVHL 2047
++ + AI ++P L +A+ + Q L
Sbjct: 121 SIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILA------------------------ 156
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107
A A+ + A + + ++P L M D +V++ A A T +D
Sbjct: 157 --------AFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208
Query: 2108 EGVESLVSELLKGVGD 2123
+ +E + L++ + D
Sbjct: 209 KDIERFIPSLIQCIAD 224
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-10
Identities = 55/447 (12%), Positives = 139/447 (31%), Gaps = 82/447 (18%)
Query: 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTAL 2022
+++ + L + + R ++ ++ + L ++D +T+ A+
Sbjct: 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAM 73
Query: 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 2082
+ I + L E ++ ++PA+ +
Sbjct: 74 QAVAHIAN-----------------------QSNLSPSVEP-------YIVQLVPAICTN 103
Query: 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA-SIRRSSAYLIGYFYK 2141
G+ D ++QS+A E ++ ++ +++L+ L + + + +
Sbjct: 104 AGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163
Query: 2142 NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP-KEVQPSYIKVIRDAI 2200
+K + P +I L + D+ AAA A+++ +V K+++ +I + I
Sbjct: 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER-FIPSLIQCI 222
Query: 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT 2260
+ + G P L ++P+ +GL ++ ++A+
Sbjct: 223 ADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV--------- 273
Query: 2261 SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 2320
I + +++ D + PFL +L
Sbjct: 274 -----------IIDNMCKLVEDP---------------------QVIAPFLGKLLPGLKS 301
Query: 2321 CLQDSTR-TVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379
R AL L + + ++S AG L + +LK
Sbjct: 302 NFATIADPEAREVTLRALKTLRRVGNVGEDDAIP-----ELSHAGDVSTTLQVVNELLKD 356
Query: 2380 AGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ + + + + + +
Sbjct: 357 ETVAPRFKIVVEYIAAIGADLIDERII 383
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-10
Identities = 53/345 (15%), Positives = 117/345 (33%), Gaps = 21/345 (6%)
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1945
L+ + ++ + E + VA L +V + + +++P L+ + + + + + +
Sbjct: 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAIL 155
Query: 1946 GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 2005
M A K Q+ M ELIP + + D+ EV+ +A A + ++ + I+ +
Sbjct: 156 AAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI 215
Query: 2006 PTLLHALEDDQTSDTALDGLKQILSVR-----TTAVLPHILPKLVHLPLSAF-------- 2052
P+L+ + D + L V T +++ +L + ++ +
Sbjct: 216 PSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVII 275
Query: 2053 -NAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGV 2110
N L +V P LG +LP L S D + + + A + TL
Sbjct: 276 DNMCKLVEDPQVIAP----FLGKLLPGLKSNFATIADPEAREVTLRALK--TLRRVGNVG 329
Query: 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170
E L GD +++ + L +V+ + + LI
Sbjct: 330 EDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWF 389
Query: 2171 AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215
++ + + + ++ G
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE 434
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 3e-07
Identities = 32/219 (14%), Positives = 81/219 (36%), Gaps = 13/219 (5%)
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208
++ ++ L LS + + ++ + E + +DK+
Sbjct: 10 QQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKT 68
Query: 2209 RKKKGGPILIPGFC--LPKALQP----LLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
+ L +++P L+P + E++ A+ L ++ +
Sbjct: 69 AANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128
Query: 2263 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322
++K ++P L I + WQ K AIL+ S ++ + +P+L + +
Sbjct: 129 VAIK-ALLP---HLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM 184
Query: 2323 QDSTRTVRSSAALALGKLSALST--RVDPLVGDLLSSLQ 2359
D+ + V+++A A+ K + ++ + L+ +
Sbjct: 185 WDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-05
Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 35/240 (14%)
Query: 2342 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401
+ S + ++ +L L V+ A R I + + L G + V + L +
Sbjct: 7 SDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLN--GNIIEHDVPEHFFGELAKGI- 63
Query: 2402 HDDDHVRVSAASILGIMSQCMEDGQ-----LADLLQELLNLASSPSW----AARHGSVLV 2452
D +A + ++ + L+ + A + A + +
Sbjct: 64 -KDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI 122
Query: 2453 FATFLRHNPSAISMSPLFLSILDRLKSSLKDE-KFPLREASTKALGRLLLHQIQSGPANT 2511
NP AI +L L +++ + K+ + A A + + +
Sbjct: 123 VNAV---NPVAIKA------LLPHLTNAIVETNKWQEKIAILAAFSAM----VDAAKDQV 169
Query: 2512 TV-VVDILASVVSALHDDSSEVRRRALSALKSVAK--ANPSAIMVHVALFGPALAECLKD 2568
+ + +++ + + D EV+ A +A+ + N + F P+L +C+ D
Sbjct: 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-----IERFIPSLIQCIAD 224
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-04
Identities = 51/329 (15%), Positives = 118/329 (35%), Gaps = 44/329 (13%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLY--IRDIGLGGDNVDAGWL 1192
LF+ LS + + R A +A+ + G++ ++ G +
Sbjct: 19 LFQKLSVATADNRHEIASEVASF-------LNGNIIEHDVPEHFFGELAKGIKDKKTA-A 70
Query: 1193 GRQGIALALHSAADVLRTKDLPVIMTFL--ISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
A+A + L P I+ + I + + +++ I I++
Sbjct: 71 NAMQ-AVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA--KHLAKDDPKVHA-----VVD 1303
+ L P N + + +EK LA + A ++
Sbjct: 130 AIKALLPHLTNAIVETNKWQEK-----------IAILAAFSAMVDAAKDQVALRMPELIP 178
Query: 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGL 1362
L + + + V+ A ++ ++ +++ + + L+ + + E L
Sbjct: 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPE---TVHLL 235
Query: 1363 AGV--VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYV 1418
V ++L + L GL +R + +R+ A++ + +C+ + ++ P++
Sbjct: 236 GATTFVAEVTPATLSI--MVPLLSRGLNERETGIKRKSAVI-IDNMCKLVEDPQVIAPFL 292
Query: 1419 IQMLPLLLVAFSDQVVAVREAAECAARAM 1447
++LP L F+ +A EA E RA+
Sbjct: 293 GKLLPGLKSNFAT--IADPEAREVTLRAL 319
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 330 bits (847), Expect = 4e-93
Identities = 173/1167 (14%), Positives = 391/1167 (33%), Gaps = 121/1167 (10%)
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS 1349
+ DD VV +L +L + VQ CL PL+ +++ + L M S
Sbjct: 38 SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97
Query: 1350 DKYGERRGAAFGLAGVVK-------GFGISSLKKYGIAATLREGLADRNSAKRREGALLA 1402
DK R ++ GL V+ G +++ I L +A + + AL
Sbjct: 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157
Query: 1403 FECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462
+ + G L + +L LL + +AVR+ A ++ ++
Sbjct: 158 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH 217
Query: 1463 LLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
LL L ++ + T ++ +Q + A++ A ++ + L KI+P + + +++
Sbjct: 218 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277
Query: 1522 ALQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
A + P +++++ L LT DPN + + D +
Sbjct: 278 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 337
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
+ S + ++ AA+ + + S T + + + + P + + V++
Sbjct: 338 EYSDD---DDMSWKVRRAAAKCLDAVVS--TRHEMLPEFYKTVSPALISRFKEREENVKA 392
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
A SL++ ++ ++ + ++ +I
Sbjct: 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS-----------------QVPNI 435
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES--VRD 1755
+ + + + R + L L ++ ++P I+ L D++ S ++
Sbjct: 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKI 495
Query: 1756 AALGAGHVLVEHYATTSL----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
AL +V++ +++ L+P V + + ++I ++ + L+ +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI----- 550
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+ L + S D + I+ L D+ V++ A+ I
Sbjct: 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAA--------------DIDQEVKERAISCMGQI 596
Query: 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVA--GRALGELVRKLGERVLPSIIPILS 1929
+ N L +P + + L + + V G ++ VL +PIL+
Sbjct: 597 ICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA 656
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
L+ + + G L ++ + S + +D ++ + + +S + V + A
Sbjct: 657 SFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFL 716
Query: 1990 STLFK---SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL-SVRTTAVLPHILPKLV 2045
+TL K S+ + I+ L+ + AL + ++ T L+
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 2105
+ + + + + + + + A
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC-------------------------- 810
Query: 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165
+ ++V + ++ V +++++ L+ + L + S ++ S
Sbjct: 811 -PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL-SGQLELKSVILEAFSSP 868
Query: 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILI---PGFC 2222
+AA AL + E P + I++ ++ +I
Sbjct: 869 SEEVKSAASYALGSISVGNLPEYLP----FVLQEITSQPKRQYLLLHSLKEIISSASVVG 924
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282
L ++ + + L+ R A LG+L + E L +
Sbjct: 925 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISG------- 977
Query: 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL-- 2340
+S++++ + I + P L F+K L+D VR A +
Sbjct: 978 --SSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAH 1035
Query: 2341 ---SALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLK 2397
S + +D ++ L + +V IRE + G KH +V + IR +
Sbjct: 1036 NKPSLIRDLLDTVLPHLYNETKVRKELIREVEM----GPFKH---TVDDGLDIRKAAFEC 1088
Query: 2398 DLVYHDDDHVRVSAASILGIMSQCMED 2424
D R+ L + ++D
Sbjct: 1089 MYTLLDSCLDRLDIFEFLNHVEDGLKD 1115
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 271 bits (692), Expect = 9e-74
Identities = 170/1132 (15%), Positives = 371/1132 (32%), Gaps = 90/1132 (7%)
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
L+ + + + K+V + ++L D + +VQ+ L + S +K ++ ++V
Sbjct: 30 LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 89
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKKAAQ 1598
TL + + + I L+T A S + L V + + R SA K++
Sbjct: 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149
Query: 1599 IVGNMCSLVTE-----PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
+ ++ + ++ + +L + L P VR A+G L+ G
Sbjct: 150 VQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 209
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRA 1710
F DL+ LL L ++S Q ++ + G Y E I+P +++ C+
Sbjct: 210 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD 269
Query: 1711 SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVEHYA 1769
+R+ + F+ R + ++ ++ L L D N + D + +
Sbjct: 270 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 329
Query: 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829
+ +W++R+++ + L + T + L E A
Sbjct: 330 --DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV----VSTRHEMLPEFYKTVSPALISRF 383
Query: 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1889
V + +V A + L+ +P ++
Sbjct: 384 KEREENV-----KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA 438
Query: 1890 LISSLASSSSERRQVAGRALGELVRKLG---ERVLPSIIPILSRGLKDPSASR--RQGVC 1944
L + S + RQ L ELV L + +P ++P + L D S+S +
Sbjct: 439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL 498
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004
L ++ + + L+P + + D ++ A L L K
Sbjct: 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP------ 552
Query: 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064
D +S A +K + T + + + + +G +
Sbjct: 553 --------LDQPSSFDATPYIKDLF----TCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 2065 GPGLNFHLGTILPALLSAMGDDDMDVQSLA--KEAAETVTLVIDEEGVESLVSELLKGVG 2122
G L L L L + ++ + ++ A + + + V L +
Sbjct: 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660
Query: 2123 DNQASIRRSSAYLIGYFYKNSKLYLVDEA-PNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181
NQ +++ + + KN L ++ L L+S+SD A L+ +
Sbjct: 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720
Query: 2182 ASVPK-------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIF 2234
P + I ++R + +++ G + L +
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 2294
+A +Q+ + + + + KE + + + R ++ L
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL 840
Query: 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354
+L + + +L++ ++ + V+S+A+ ALG +S +
Sbjct: 841 SLGEVGHHIDL---SGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYL---PF 894
Query: 2355 LSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI 2414
+ S + +L +LK ++ A ++++L ++ R A
Sbjct: 895 VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 954
Query: 2415 LGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 2474
LG ++ + L L L S S AR V + +P I PL + +
Sbjct: 955 LGKLTLIDPETLLPRLKGYL----ISGSSYARSSVVTAVKFTISDHPQPI--DPLLKNCI 1008
Query: 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH-------- 2526
+L+D +R + ++ ++ +L + +
Sbjct: 1009 GDFLKTLEDPDLNVRRVALVTFNSAAHNK---PSLIRDLLDTVLPHLYNETKVRKELIRE 1065
Query: 2527 ----------DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD 2568
DD ++R+ A + ++ + + + F + + LKD
Sbjct: 1066 VEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL--DIFEFLNHVEDGLKD 1115
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 199 bits (506), Expect = 3e-51
Identities = 162/1210 (13%), Positives = 372/1210 (30%), Gaps = 151/1210 (12%)
Query: 1133 SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 1191
S L + ++ S+ + R A L T L + S + + ++ + V
Sbjct: 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV---- 64
Query: 1192 LGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN 1251
+ L ++ + I+ L + + +R +I + +
Sbjct: 65 --QNLAVKCLGPLVSKVKEYQVETIVDTLCT-NMLSDKEQLRDISSIGLKTVIGELPPAS 121
Query: 1252 V-----SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL 1306
+ + L + +E + E + I L++ +++ LL
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 181
Query: 1307 DVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGV 1365
L +P AV++ L L+ S + L+ LL +L K+D R +A +
Sbjct: 182 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241
Query: 1366 VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425
+ G + L + + + RE + AFE + + P+V ++ +
Sbjct: 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC 301
Query: 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 1485
L + + + AM + +D +W+ ++++ + L A+
Sbjct: 302 LKYLTYDPNYNYDDEDEDENAMDA-DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360
Query: 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-------------- 1531
+ L + + P L + V++ A + +
Sbjct: 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420
Query: 1532 --------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIV 1581
++ ++V L + + + T+ +L + + +LVP +
Sbjct: 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
Query: 1582 HRGLRERSAETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640
L ++S+ + K A + P+ P++ L+P V + DP ++ S A
Sbjct: 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEAL 540
Query: 1641 RAIGSL---IRGMGEENFPDLVSWL-------LDALKSDNSNVE-RSGAAQGLSEVLAAL 1689
L IR + + + D ++ + LK+ + + E + A + +++ L
Sbjct: 541 LVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 1690 GTVYFEHILP--DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747
G + I + L L + + L + +P + L
Sbjct: 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660
Query: 1748 DENESVRDAALGAGHVLVEHYATTSLP----LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803
+++ L A +L+++Y+ + +L + I + + Q ++ L L
Sbjct: 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720
Query: 1804 FKVAGTSGKAL---------LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM--- 1851
+ K L +G + A ++ N L
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 1852 ---VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE-RRQVAGR 1907
+L+ +Q+ + K + A T KE V+ + S S++ R +A
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL 840
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQG------------------------- 1942
+LGE+ + + ++ PS +
Sbjct: 841 SLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEIT 900
Query: 1943 --------VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994
+ L E+++SA L +++ + + + R L
Sbjct: 901 SQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL 960
Query: 1995 SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN- 2053
+ + L+ + + +K +S + P + + L
Sbjct: 961 IDPETLLPRLKGYLIS--GSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF-LKTLED 1017
Query: 2054 ---------AHALGALAEVAGPGLNFHLGTILPALLS------------AMG------DD 2086
+ A + L T+LP L + MG DD
Sbjct: 1018 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDD 1077
Query: 2087 DMDVQSLAKEAAET-VTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL 2145
+D++ A E T + +D + ++ + G+ D I+ + ++
Sbjct: 1078 GLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPS 1136
Query: 2146 YLVDEAPNMISTLIVLLS------------DSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
++ ++ L + + +A A++ ++ E P
Sbjct: 1137 AVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMS 1196
Query: 2194 KVIRDAISTS 2203
+ S
Sbjct: 1197 EFQSQISSNP 1206
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 157 bits (397), Expect = 2e-38
Identities = 150/898 (16%), Positives = 306/898 (34%), Gaps = 82/898 (9%)
Query: 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777
L L + + ++V+ IL L D+N V++ A+ LV + ++
Sbjct: 29 DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIV 88
Query: 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL 1837
+ + +D ++R S L ++ ++ S + L + I L
Sbjct: 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL----------AANVCKKITGRL 138
Query: 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897
+ +SV+ AL + +++ L P ++ L+ L S
Sbjct: 139 -----------TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP 187
Query: 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGK 1956
R+ ALG LV G V +I L L K+ S S + ++ + AG
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALE 2013
++ +++++IP + E+RE AF + + + + I+ L L
Sbjct: 248 -RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN-------AHALGALAEVAGP 2066
D + + + + + A L A+
Sbjct: 307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 366
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
L T+ PAL+S + + +V++ A ++ + ++
Sbjct: 367 MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186
L + PN++ L + + T + L+ +V +P
Sbjct: 427 -------------------MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467
Query: 2187 EVQPSYIKVIRDAISTSRDKE--RRKKKGGPILIPGFC-------LPKALQPLLPIFLQG 2237
+ ++ I + DK K + +Q L+P +
Sbjct: 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC 527
Query: 2238 LISGSAELREQAALGLGELIEV------TSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKS 2290
+ ++ +A L +L++V S ++ + I+ + Q VK
Sbjct: 528 VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKE 587
Query: 2291 AILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL 2350
+S + II G L LP F++ L++ + + AL L S L + P+
Sbjct: 588 RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPV 647
Query: 2351 VGD----LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+G+ L S L+ + ++ L+AL ++K+ S+++A+ V L L+ D H
Sbjct: 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707
Query: 2407 VRVSAASILGIMSQCMED---GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 2463
V A S L +++ +L EL+ L SP S ++ F +
Sbjct: 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAML--DFFQALVVT 765
Query: 2464 ISMSPLFLSILDRLKSSLKDEKFP-LREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
+ + ++ +L L + + + S ++ + + ++ P VV V
Sbjct: 766 GTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV 825
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
+ +R AL +L V + + + + E S V+ AA
Sbjct: 826 KN-SRSTDSIRLLALLSLGEVGHHIDLSGQLELK---SVILEAFSSPSEEVKSAASYA 879
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 6e-34
Identities = 150/1006 (14%), Positives = 308/1006 (30%), Gaps = 141/1006 (14%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA--VHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ + +DP + + ED
Sbjct: 261 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 320
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380
Query: 1178 RDIGLGGDNV----------------DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLI 1221
+NV A+ + +P I+ L
Sbjct: 381 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440
Query: 1222 SRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
+ + + + R N +++ ++ +L P LN K+S ++
Sbjct: 441 -KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN----LKI 495
Query: 1279 GVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQ-----------RAVSSCLS 1325
+ + + + P V A+V ++ + P + + +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
P L + + +L +D E + A G + +L
Sbjct: 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
+N R L P + + +P+L A++ A
Sbjct: 616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 1446 AMM----SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
++ L+A + VL L + + Q ++ L +A P LS+ I+
Sbjct: 676 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
+L L + A L +++ LL LT P
Sbjct: 736 NELIG-LVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP------------ 782
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
V + S AL ++S + K + C PK+ +G +
Sbjct: 783 -------VYSQSTAL--------THKQSYYSIAKCVAALTRAC-----PKEGPAVVGQFI 822
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
+VK +R +A ++G + + +L S +L+A S + V +S A+
Sbjct: 823 QDVKN--SRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYA 879
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
L + Y +L +I Q + +L + + + V + Y++ +
Sbjct: 880 LGSISVGNLPEYLPFVLQEITSQPKRQYLLLH----SLKEIISSASVVGLKPYVENIWAL 935
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
+L E R+ L T LP L + + R S V +
Sbjct: 936 LLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLIS----GSSYARSSVVTAVKF 991
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
+ H + I +L + D L+VR
Sbjct: 992 TISD-----------------------HPQPIDPLL-----KNCIGDFLKTLEDPDLNVR 1023
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS------------------ERRQ 1903
+ AL + + N P +++++ ++ L + + R+
Sbjct: 1024 RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRK 1083
Query: 1904 VAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQG--VCIGLSEVMASAGKSQLL 1960
A + L+ +R+ + + + GLKD + + + LS + SA +L
Sbjct: 1084 AAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLD 1143
Query: 1961 SFMDELIPTIRTALCDSIL--EVRESAGLAFSTLFKSAGMQAIDEI 2004
++ L T T + + + E + L S + A + I E
Sbjct: 1144 RLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 3e-22
Identities = 72/537 (13%), Positives = 162/537 (30%), Gaps = 80/537 (14%)
Query: 2075 ILPALLSAMGDDDMDVQSLA----KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR 2130
+ LL M D D + +A + ++ +D++ +V +LK + D ++
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP----- 2185
+ +G K + ++ TL + + L V+ +P
Sbjct: 67 LAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123
Query: 2186 ----KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQP----LLPIFLQG 2237
V + AI+ D + + + L +L L
Sbjct: 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 183
Query: 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS 2297
L S +R++ + LG L+ + + L+ + + ++
Sbjct: 184 LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIE----HLLSELSKNDSMSTTRTYIQCIA 239
Query: 2298 IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357
I R+ G + +L + ++ ++
Sbjct: 240 AISRQAGHRIGEYLEK------------------------------------IIPLVVKF 263
Query: 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGI 2417
V D +RE + A + ++ K V V + LK L Y + + +
Sbjct: 264 CNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323
Query: 2418 MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRL 2477
+ +D + + SW R + + + + ++ L
Sbjct: 324 DADGGDD--DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE--MLPEFYKTVSPAL 379
Query: 2478 KSSLKDEKFPLREASTKALGRLL--------------LHQIQSGPAN--TTVVVDILASV 2521
S K+ + ++ A LL + P + V +I+ ++
Sbjct: 380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKAL 439
Query: 2522 VSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAE 2578
+ + S + R+ + L + P A+ H+ + P + L D S+ L +
Sbjct: 440 HKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKID 496
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 74.0 bits (180), Expect = 6e-13
Identities = 43/233 (18%), Positives = 84/233 (36%), Gaps = 4/233 (1%)
Query: 2350 LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRV 2409
+ +LL + SD R L L+ + + +V ++ L+ + V+
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 2410 SAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469
A LG + +++ Q+ ++ L S R S + T + P A S S L
Sbjct: 67 LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 126
Query: 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GPANTTVVVDILASVVSALHD 2527
++ ++ L + S + ++ + S G IL ++ L
Sbjct: 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 186
Query: 2528 DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
VR+R + AL + + + + V L L+E K+ S +C
Sbjct: 187 PRLAVRKRTIIALGHLVMSCGNIVFVD--LIEHLLSELSKNDSMSTTRTYIQC 237
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 53.2 bits (126), Expect = 1e-06
Identities = 125/1048 (11%), Positives = 301/1048 (28%), Gaps = 86/1048 (8%)
Query: 267 ILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALE 326
++ +G L+ V + + L + ++ R ++ + + E
Sbjct: 68 AVKCLGPLVSKVKEYQVETIVDTLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSA 125
Query: 327 AMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATE--GKYLNSLSLTICKFLLSCYK 384
K + G +A + AL +++ G L + +I LL
Sbjct: 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT 185
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE--ALRRGHLRCLRVICTN 442
V+ + A+ +I+ DL+ S L + + + R +++C+ I
Sbjct: 186 SP-RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR- 243
Query: 443 TDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSL 502
Q +G ++ + K D + + ++ ++++
Sbjct: 244 -----QAGHRIGEYLEKIIPLVVKFCNVDDDE-----LREYCIQAFESFVRRCPKEVYPH 293
Query: 503 VSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP 562
VS + + L+ D + +
Sbjct: 294 VST-----IINICLKYLTYDPNYNYDDEDEDENAMDA---DGGDDDDQGSDDEYSDDDDM 345
Query: 563 SWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFL 622
SW +R+ A ++++ + F V +I ++
Sbjct: 346 SWKVRRAAAKCLDAVVSTRHEM-------LPEFYKTVSPALISRFKEREENVKADVFHAY 398
Query: 623 PSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKR---DAVWQRLHKCLRAV 679
S+ Q + + A + + S P+IV + + + C +
Sbjct: 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNML 458
Query: 680 GFNVIEI---VSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEK 736
V + ++ + L ++ SL S++ + A++ L ++ + +
Sbjct: 459 TELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQ 518
Query: 737 HLKDLPDCYVHDSLSENDIQVFYTPEGML----------SSEQGVYIAEIVAAKNTKQSK 786
L V D + + + ++ S + YI ++ +
Sbjct: 519 ALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
++ + +G ++ ++ + + + + + T K
Sbjct: 579 ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGS 638
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
+ +R + L+ L S L L+K L + ++ V
Sbjct: 639 PLKIDLRPVLGEGVPILASFLRKNQRALKLG---TLSALDILIKNYSDSLTAAMIDAVLD 695
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVH-VDSDLIPSVGEAAKNKESLCLFERI 965
E L L + M + A+ T L + + + ++ + ++
Sbjct: 696 E-LPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
+ + + + ++ + S H + K + L
Sbjct: 755 MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 814
Query: 1026 ISVLYHVLGVVPSYQA----------AIGSALNELCLGLQPNEVASALHGVYTKDVHVRM 1075
+V+ + V + ++ ++G + + L Q + L + V+
Sbjct: 815 PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKS 874
Query: 1076 ACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS-- 1133
A A + ++S +LPE + + + + + ++I Y
Sbjct: 875 A---ASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 931
Query: 1134 ---GLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
L K + R AE L P+++ L L + A
Sbjct: 932 IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGY---------LISGSSYAR 982
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+ + + I FL + L D + +VR L
Sbjct: 983 SSVVTAVKFTISDHPQPIDPLLKNCIGDFL--KTLEDPDLNVRRVALVTFNSAAHNKPSL 1040
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LL + + N+ +E L+RE
Sbjct: 1041 IRDLLDTVLPHLYNETKVRKE---LIRE 1065
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 283 bits (725), Expect = 2e-82
Identities = 120/672 (17%), Positives = 228/672 (33%), Gaps = 96/672 (14%)
Query: 1329 QSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ D++ ++ L+D+L +++ R + L+ + G+ + + L + +
Sbjct: 2 AADGDDSLYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSE-LLPFLTDTIY 59
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM 1448
D + +G YV +LP L + + VR+ A + RA+
Sbjct: 60 DEDEV--LLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAIS 115
Query: 1449 SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508
+ S ++ L+K L W T ++S G + C P+ S ++ +
Sbjct: 116 HEHSPSDLEAHFVPLVKRLAGGDWFTSRTSA--CGLFSVCYPRVSSAVKAELRQYFRNLC 173
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568
+D P V+ A + L + V++ + S
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKS------------------------------- 202
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628
++P+ + + A + N+ L+ + L++P +++
Sbjct: 203 -------EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEALVMPTLRQAA 251
Query: 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688
D VR + A L + +G E + L D R+ A+ + E
Sbjct: 252 EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311
Query: 1689 LG-----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743
L V ILP I S V+ ++ L LG N ++ +LP L
Sbjct: 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL 369
Query: 1744 DGLADENESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
L DE VR + + E L LLPA+ + + WR+R + +E + L
Sbjct: 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVR 1861
LG + +E L +L M D ++R
Sbjct: 430 -------------------------------AGQLGVEFFDEKLNSLCMAWLVDHVYAIR 458
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-ERV 1920
+AA K +V K + ++ +++ + R + L G +
Sbjct: 459 EAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
++P + R DP A+ R V L ++ S L E+ P + D ++
Sbjct: 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ---SEVKPILEKLTQDQDVD 573
Query: 1981 VRESAGLAFSTL 1992
V+ A A + L
Sbjct: 574 VKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 2e-41
Identities = 96/665 (14%), Positives = 204/665 (30%), Gaps = 95/665 (14%)
Query: 1888 NTLISSLASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIG 1946
LI L + + R + + L + LG ER ++P L+ + D +
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-ALAEQ 71
Query: 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
L G + + L+P + + VR+ A + + ++
Sbjct: 72 LGTFTTLVGGPEYV---HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 2066
L+ L + RT A G +
Sbjct: 129 PLVKRLAGGD-----------WFTSRT---------------------SACGLFSVCYPR 156
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES-LVSELLKGVGDNQ 2125
+ + + DD V+ A V++ + V+S ++ D Q
Sbjct: 157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 216
Query: 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
S+R + + L D ++ TL D + + + +V
Sbjct: 217 DSVRLLAVEACVNIAQ--LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG 274
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245
E+ + L+P F + AE+
Sbjct: 275 PEITKTD-------------------------------------LVPAFQNLMKDCEAEV 297
Query: 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305
R A+ + E E S + ++ P I+ + VKSA+ S + + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS---ALSTRVDPLVGDLLSSLQVSD 2362
+ L F+ L+D VR + L ++ + L+ ++ + +
Sbjct: 358 --DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG-IMSQC 2421
+R AI+ + + G ++ S+ + +R +A S L ++ +
Sbjct: 416 WRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 2422 MEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481
++ A ++ ++L ++ P++ R ++ +L +
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VCGQDITTKHMLPTVLRMA 528
Query: 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 2541
D +R K+L +I N+T+ ++ + D +V+ A AL
Sbjct: 529 GDPVANVRFNVAKSLQ-----KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 2542 SVAKA 2546
++ A
Sbjct: 584 VLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-37
Identities = 106/656 (16%), Positives = 218/656 (33%), Gaps = 93/656 (14%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716
++ L+D L++++ + R + + LS + ALG L + + + V
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1717 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776
+G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 126
Query: 1777 LPAVEDGIFNDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835
+ + +W R S+ L
Sbjct: 127 FVPLVKRLAGGDWFTSRTSACGLFS-------------------------------VCYP 155
Query: 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI--VANTPKTLKEIMPVLMNTLISS 1893
+ + E+ + SD + VR+AA V EI+P+ +
Sbjct: 156 RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFS----NL 211
Query: 1894 LASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952
+ R +A A + + L E + ++P L + +D S R V +E+
Sbjct: 212 ASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQK 271
Query: 1953 SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAIDEIVPT 2007
+ G +L+P + + D EVR +A ++ + +I+P
Sbjct: 272 AVGPEI---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328
Query: 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067
+ + D V++ A + L+ + G
Sbjct: 329 IKELVSDANQH------------VKSAL------------------ASVIMGLSPILGK- 357
Query: 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID-EEGVESLVSELLKGVGDNQA 2126
+ + +LP L+ + D+ +V+ + V VI + +SL+ +++ D +
Sbjct: 358 -DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW 416
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIV-LLSDSDSTTVAAAWEALSRVVASVP 2185
+R + + + V+ +++L + L D AA L ++V
Sbjct: 417 RVRLAIIEYMPLL---AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
KE + I A+S + R +L + +LP L+ A
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299
+R A L ++ + +L+ V PI L ++ D+ VK L+++
Sbjct: 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPI---LEKLTQDQ-DVDVKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 4e-37
Identities = 90/624 (14%), Positives = 202/624 (32%), Gaps = 64/624 (10%)
Query: 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDTALDGL 2025
I + L + +++R ++ ST+ + G++ E++P L + D+
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED--------- 62
Query: 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085
V A LG + G ++ +LP L S
Sbjct: 63 ----EVLLAL------------------AEQLGTFTTLVGG--PEYVHCLLPPLESLATV 98
Query: 2086 DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSK 2144
++ V+ A E+ ++ +E+ L+K G + + R S+ L Y
Sbjct: 99 EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158
Query: 2145 LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 2204
+ E + L SD AA L + + S I + +++
Sbjct: 159 SAVKAE---LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215
Query: 2205 DKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
R + + ++P Q S +R A EL +
Sbjct: 216 QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP 275
Query: 2263 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IALKPFLPQLQTTFIK 2320
+ K ++P ++ D +V++A + + Q+ +
Sbjct: 276 EITKTDLVPA---FQNLMKDCEA-EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331
Query: 2321 CLQDSTRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 2377
+ D+ + V+S+ A + LS + ++ L+ L+ L+ +R I++ L V
Sbjct: 332 LVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391
Query: 2378 KHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELL-N 2436
+ G + + + +L VR++ + +++ + + L L
Sbjct: 392 EVIG---IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA 448
Query: 2437 LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKAL 2496
+A R + + + + +I+ ++ + D + R + +
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEWAHA----TIIPKVLAMSGDPNYLHRMTTLFCI 504
Query: 2497 GRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 2556
L Q +L +V+ D + VR +L+ + ++ +
Sbjct: 505 NVLSEVCGQD-----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV 559
Query: 2557 LFGPALAECLKDGSTPVRLAAERC 2580
P L + +D V+ A+
Sbjct: 560 K--PILEKLTQDQDVDVKYFAQEA 581
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 73/434 (16%), Positives = 143/434 (32%), Gaps = 22/434 (5%)
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE-VQPSYIKVIRDAISTSRDKE 2207
D++ I+ LI L + D + + LS + ++ E + + + D I +
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 2208 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 2267
+ P+ + LLP +R++A L + S L+
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 2268 FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTR 2327
+P+ L + +++ S+ + A+K +L+ F D T
Sbjct: 126 HFVPLVKRLA----GGDWFTSRTSACGLFSVCYPRVSSAVK---AELRQYFRNLCSDDTP 178
Query: 2328 TVRSSAALALGKLSALSTR---VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 2384
VR +AA LG+ + + ++ + +R + A + + +
Sbjct: 179 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA-DLLQELLNLASSPSW 2443
A V L+ VR A + + + DL+ NL
Sbjct: 239 LEA---LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503
R + F + + + + IL +K + D ++ A + L
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 2563
+ + +L ++ L D+ EVR +S L V + + L PA+
Sbjct: 356 GKD-----NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL--PAIV 408
Query: 2564 ECLKDGSTPVRLAA 2577
E +D VRLA
Sbjct: 409 ELAEDAKWRVRLAI 422
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 7e-11
Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 17/235 (7%)
Query: 2354 LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAAS 2413
L+ L+ D +R + L + G + + L D + +D+D V ++ A
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALG---VERTRSELLPFLTDTI-YDEDEVLLALAE 70
Query: 2414 ILGIMSQCMEDGQLAD-LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472
LG + + + LL L +LA+ R +V + + + F+
Sbjct: 71 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-LEAHFVP 129
Query: 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEV 2532
++ RL + F R ++ + V ++ + DD+ V
Sbjct: 130 LVKRL---AGGDWFTSRTSACGLFSVCYPRVSSA------VKAELRQYFRNLCSDDTPMV 180
Query: 2533 RRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587
RR A S L AK + + P + D VRL A V+ QL
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEII--PMFSNLASDEQDSVRLLAVEACVNIAQL 233
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 4e-07
Identities = 78/548 (14%), Positives = 159/548 (29%), Gaps = 67/548 (12%)
Query: 859 VQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSR---- 914
V L+ L + + P + H LP L ++ +V D A E+L +S
Sbjct: 64 VLLALAEQLGTFTTL-VGGPEYVHCLLPPLESLAT--VEETVVRDKAVESLRAISHEHSP 120
Query: 915 ----------CTAMPLCNWALDIATALRLIVTEEVHVDS----DLIPSVGEAAKNKESLC 960
+ +W +A L V S +L + +
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRT--GLHDDVLQMLYKHMDPLL 1018
+ V S + P+ + + + L + + + +
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSE--IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 1019 PLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTK-----DVHV 1073
+ M ++ + + EL + P + L + + V
Sbjct: 239 LEALV-MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1074 RMACLNAVKCIPAVSTRSLPENI---EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
R A + VK + EN+ ++ + V D + V A + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1131 DYS------GLFKALSHSNYNVRLAAAEALAT-----ALDEYPDSIQGSLSTLFSLYIRD 1179
D + L VRL L + + S+ ++ L
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE----- 412
Query: 1180 IGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA 1239
DA W R I + A L + + L L D +R +
Sbjct: 413 --------DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 464
Query: 1240 GIMIIDKHGRDNV-SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV 1298
+++K G++ + + P + L R + L++ +D
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSG------DPNYLHRMTTLFCINVLSEVCGQDITTK 518
Query: 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRG 1357
H ++ +L + P V+ V+ L + + + + V +L++L + +
Sbjct: 519 H-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYF 577
Query: 1358 AAFGLAGV 1365
A L +
Sbjct: 578 AQEALTVL 585
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 4e-40
Identities = 37/214 (17%), Positives = 84/214 (39%), Gaps = 2/214 (0%)
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPK 1514
+ + LE+K W ++ S+++L + P+ + +V L +V+T D++
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574
+ + L + + ++ + L + K ++ L+ + SL
Sbjct: 73 LVAMAGKCLALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
+ L ++ K + A + + + LL + K L +P P
Sbjct: 132 EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPT 191
Query: 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
VR +A A+G+LI+ MG++ L++ + +
Sbjct: 192 VRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 3e-20
Identities = 35/215 (16%), Positives = 83/215 (38%), Gaps = 9/215 (4%)
Query: 1334 EAPTLVSRL---LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG-IAATLREGLAD 1389
+ ++S++ ++ K+ R+ + L ++ +YG + + L++ +
Sbjct: 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK 67
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
++ A L + L + F Y +P LL F ++ V A A A+ +
Sbjct: 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLS-QCLPKIVPKLTEV 1507
S + S+++ L +K K + + P L+ + L + L +
Sbjct: 128 STSLE---AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542
L + P V+ + AL + ++ + + L+ +
Sbjct: 185 LNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA---LGTVYFEHILPDIIRNCSH- 1707
+ + D L+ R + + L ++L L + ++ + + +
Sbjct: 10 VDILSKMPKDFYDKLEEKKWT-LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68
Query: 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767
+ L + L +F NY +P++L+ ++ +V A A +
Sbjct: 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREA---IDAI 125
Query: 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1807
YA+TSL ++ + + N N ++ + + L +
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 39/216 (18%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPI 1632
L+ + + L E+ +K++ +++ + + PK G L+ +KKV+ D
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH--PKLENGEYGALVSALKKVITKDSN 70
Query: 1633 PEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
+ ++A + + L +G+ + V LL+ K NV L E + A+
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNV-----VTALREAIDAI 125
Query: 1690 -GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ--FQNYLQQVLPAILDGL 1746
+ E I+ + S++ SV+ + L+ + +++ L
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ + +VRD++ A L++ ++ LL V+
Sbjct: 186 NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDP 221
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 29/240 (12%), Positives = 81/240 (33%), Gaps = 34/240 (14%)
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVR---KLGERVLPSIIPILSRGLKDPSA 1937
+I+ + L R+ + L +L+ KL +++ L + + S
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+ ++A + ++ +P++ + V + A ++ S
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
++ +++ +L + SV++ + L+ AL
Sbjct: 131 ---LEAQQESIVESLSNKNP------------SVKSETA------LFIARALTRTQPTAL 169
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
L + +L+ + + D V+ + EA T+ ++ ++ V L++++
Sbjct: 170 NK----------KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 10/195 (5%)
Query: 2311 LPQLQTTFIKCLQDSTRTVRSSAALALGKL-----SALSTRVDPLVGDLLSSLQ-VSDAG 2364
L ++ F L++ T+R + L KL + LV L + S+
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+ L + K K S+ L + +V + + +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASA-CVPSLLEKFKEKKPNVVTALREAIDAI---YAS 128
Query: 2425 GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE 2484
L + ++ S+ + + + + L A L L + L +L +
Sbjct: 129 TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEP 188
Query: 2485 KFPLREASTKALGRL 2499
+R++S +ALG L
Sbjct: 189 DPTVRDSSAEALGTL 203
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 13/207 (6%)
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVE---HYATTSLPLLLPAVEDGIFND-NWR 1790
L ++ D L ++ ++R +L L+ L+ A++ I D N
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1791 IRQSSVELLGDL-------LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + L L A +LLE + + A AI +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT--LKEIMPVLMNTLISSLASSSSER 1901
++ S+ + SV+ + T T K+++ +L +L+ +L
Sbjct: 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV 192
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPIL 1928
R + ALG L++ +G++ + ++ +
Sbjct: 193 RDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 27/211 (12%), Positives = 70/211 (33%), Gaps = 21/211 (9%)
Query: 2407 VRVSAASILGIMSQC---MEDGQLADLLQELLN-LASSPSWAARHGSVLVFATFLRHNPS 2462
+R + +L + +E+G+ L+ L + + + A +
Sbjct: 31 LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522
S + + L K++K + A +A+ + +T + S+V
Sbjct: 91 --RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI---------YASTSLEAQQESIV 139
Query: 2523 SALHDDSSEVRRRALSALKSVAKANPSAIMV--HVALFGPALAECLKDGSTPVRLAAERC 2580
+L + + V+ + + + L +L + L + VR ++
Sbjct: 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEA 199
Query: 2581 AVHAFQLTRGSEYIQGAQKFITGLDARRLSK 2611
+L G + + + +D +++K
Sbjct: 200 LGTLIKLM-GDKAV---TPLLADVDPLKMAK 226
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 20/235 (8%)
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY---IKVIRDAISTSR 2204
VD M L + T + E L +++ PK Y + ++ I+
Sbjct: 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS 69
Query: 2205 DKERRKKKGGPILIPGFCLPKALQP----LLPIFLQGLISGSAELREQAALGLGELIEVT 2260
+ G + + L K +P L+ + + + T
Sbjct: 70 NVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST 129
Query: 2261 SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA--LKPFLPQLQTTF 2318
S ++ +E ++ + ++ VKS ++ + + K L L T+
Sbjct: 130 SLEAQQE-------SIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL-QVSDAGIREAILTA 2372
+K L + TVR S+A ALG L L D V LL+ + + A I+E A
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMG--DKAVTPLLADVDPLKMAKIKECQEKA 234
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 40/206 (19%)
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSER 1901
+++ Y + ++R+ +L V + ++ + PK L++ L + S+
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 1902 RQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+AG+ L L + L +R + +P L K+ + + + + AS
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 1959 LL------------------------------------SFMDELIPTIRTALCDSILEVR 1982
+ L ++ L + VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTL 2008
+S+ A TL K G +A+ ++ +
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 12/202 (5%)
Query: 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ + D L+ +R+ L L+ +L K + V ++ K + +
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 2407 VRVSAASILGIMSQCMEDG---QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 2463
+ A L ++++ + + + LL
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 2464 ISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVS 2523
+ + + SL ++ ++ + + R L + Q N ++ + S+V
Sbjct: 133 --------AQQESIVESLSNKNPSVKSETALFIARAL-TRTQPTALNKKLLKLLTTSLVK 183
Query: 2524 ALHDDSSEVRRRALSALKSVAK 2545
L++ VR + AL ++ K
Sbjct: 184 TLNEPDPTVRDSSAEALGTLIK 205
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 5e-36
Identities = 136/970 (14%), Positives = 301/970 (31%), Gaps = 173/970 (17%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 65
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
++L K + + + D I
Sbjct: 66 SLSGLIL--------------------------------KNN--VKAHFQNFPNGVTDFI 91
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE 1674
E + D P +R+ I ++ +N+PDL+ L L S++ N
Sbjct: 92 ------KSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNT- 144
Query: 1675 RSGAAQGLSEVLAALGTVYFEH--------ILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726
GA L ++ + ++P ++ H +R + S
Sbjct: 145 CEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204
Query: 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---DG 1783
++ + + DE VR A +L+E LP + VE
Sbjct: 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR 264
Query: 1784 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + + E L A + + +G ++ +
Sbjct: 265 TQDQDENVALEACEFWLTL----AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1903
+V + ++R+ + + E++P ++ L L ++
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKE 377
Query: 1904 VAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
LG + + + LP +IP L + L D A R C LS
Sbjct: 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHALEDDQT 2017
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A Q
Sbjct: 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH 497
Query: 2018 SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN--FHLGTI 2075
+ L + A+G LA+ G LN ++ +
Sbjct: 498 KN-----LLILYD-------------------------AIGTLADSVGHHLNKPEYIQML 527
Query: 2076 LPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 2135
+P L+ + + L E ++ V S + V ++
Sbjct: 528 MPPLIQKWNMLKDEDKDLFP-LLECLSSVATALQ--SGFLPYCEPVYQRCVNL------- 577
Query: 2136 IGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195
+ + + D + A + LS + + ++
Sbjct: 578 ---------VQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV--- 625
Query: 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGE 2255
A +L + Q + E+R+ + LG+
Sbjct: 626 ------------------------------ARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 2256 LIEVTSEQSLKEFVIPITGPLIRIIG---DRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312
L + + + V P + I+G + V + + I + GI ++P++P
Sbjct: 656 LTK-----ACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP 710
Query: 2313 QLQTTFIKCLQDST--RTVRSSAALALGKL-----SALSTRVDPLVGDLLSSLQ-VSDAG 2364
+ ++ + +T+ + A+ +G+L ++ + + +SL+ + D
Sbjct: 711 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE 770
Query: 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+++ + ++ V +V + DD +R IL + D
Sbjct: 771 EKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDD--LRDMFCKILHGFKNQVGD 828
Query: 2425 GQLADLLQEL 2434
+
Sbjct: 829 ENWRRFSDQF 838
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 126 bits (316), Expect = 6e-29
Identities = 92/650 (14%), Positives = 201/650 (30%), Gaps = 73/650 (11%)
Query: 2003 EIVPTLLHALEDDQTSDT-----ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN---- 2053
+ L+ L ++ D + LK + + + L+
Sbjct: 45 DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSP 104
Query: 2054 ---AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA----AETVTLVID 2106
A + +A G + +LP L S + +D + A A E ++D
Sbjct: 105 LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD 164
Query: 2107 EEGVE----SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 2162
+ ++ ++ + L+ + IR + + F + L+ + I L L
Sbjct: 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA 224
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222
D + AL ++ + P ++ + ++D++
Sbjct: 225 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA 284
Query: 2223 ----LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------------- 2262
L LP + L++G L G++ +
Sbjct: 285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAA 344
Query: 2263 -----QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317
++ ++P PL++ + W VK + + L I + P+LP+L
Sbjct: 345 LDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404
Query: 2318 FIKCLQDSTRTVRSSAALALGKLS------ALSTRVDPLVGDLLSSLQVSDAGIREAILT 2371
I+CL D VRS L + + T + PL+ +LL + S+ ++EA +
Sbjct: 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464
Query: 2372 ALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 2431
A + + A + + + +++ + ++ + +I + + +
Sbjct: 465 AFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524
Query: 2432 QELLNL------ASSPSWAARHGSVLVFATFLRHNPSAIS--MSPLFLSILDRLKSSLKD 2483
Q L+ + ++ S P++ ++ ++ +L
Sbjct: 525 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQ 584
Query: 2484 EKFP-------------LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 2530
+ L L + +IL + + D
Sbjct: 585 AMLNNAQPDQYEAPDKDFMIVALDLLSG-LAEGLGGNIEQLVARSNILTLMYQCMQDKMP 643
Query: 2531 EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
EVR+ + + L + KA + +A F P L L V A
Sbjct: 644 EVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWA 693
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 9e-29
Identities = 109/749 (14%), Positives = 225/749 (30%), Gaps = 98/749 (13%)
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRK----LGERVLPSIIPILSRGLKDPSASR 1939
+ +++ L S R ++G L V+ V I + D S
Sbjct: 47 NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI 106
Query: 1940 RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-- 1997
R V I ++ + + +L+P + + L E A A + + +
Sbjct: 107 RATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162
Query: 1998 ------MQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSVRTTAVLPHI---LPKLVH 2046
+ ++ ++P L + + A+ + Q + RT A++ HI + L
Sbjct: 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA 222
Query: 2047 LPLS--------AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098
L AL L EV L H+ I+ +L D D +V A EA
Sbjct: 223 LAGDEEPEVRKNVCR--ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV---ALEAC 277
Query: 2099 ETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTL 2158
E + ++ + ++ L LI K +D
Sbjct: 278 EFWLTLAEQPICKDVLVRHLPK--------------LIPVLVNGMKYSDIDIILLKGDVE 323
Query: 2159 IVLLSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215
D SD + AL + E+ P + ++++ + E K+ G
Sbjct: 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGI 380
Query: 2216 ILI------PGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269
+++ + L L+P +Q L A +R L Q ++
Sbjct: 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL 440
Query: 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329
P+ L++ I D +V+ A S + + + L P+L + T +
Sbjct: 441 KPLMTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKN 499
Query: 2330 RSSAALALGKLSALSTR-------VDPLVGDLLSSLQVS--DAGIREAILTALKGVLKHA 2380
A+G L+ + L+ L+ + + +L L V
Sbjct: 500 LLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL 559
Query: 2381 GKSVSSAVK----------------IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+ + + D D + A +L +++ +
Sbjct: 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG 619
Query: 2425 G-----QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479
+++L + R S + + + P + L +
Sbjct: 620 NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV--KPCIADFMPILGT 677
Query: 2480 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH--DDSSEVRRRAL 2537
+L E + +T A+G + + G + +L +V ++ + +
Sbjct: 678 NLNPEFISVCNNATWAIGEISIQ---MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTA 734
Query: 2538 SALKSVAKANPSAIMVHVALFGPALAECL 2566
+ + P + + F L
Sbjct: 735 ITIGRLGYVCPQEVAPMLQQFIRPWCTSL 763
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 3e-22
Identities = 108/749 (14%), Positives = 233/749 (31%), Gaps = 76/749 (10%)
Query: 1105 AVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYP 1162
P+ ++ + ++ DF + L + R + L + +
Sbjct: 21 ESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80
Query: 1163 DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLIS 1222
+ ++ +I+ L D+ L R + + + + A ++ P ++ L S
Sbjct: 81 QNFPNGVTD----FIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWPDLLPKLCS 135
Query: 1223 RALADTNADVRGRMLNAGIMIID---KHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ G + D D + I + +R
Sbjct: 136 LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK--IRSH 193
Query: 1280 VVIFTGALAKHLAKDD-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
V + + + ++ L + V++ V L L++ D
Sbjct: 194 AVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ +++ +++ + + A +L + I + + G
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEF------WLTLAEQPICKDVLVRHLPKLIPVLVNG 307
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
+ + G + + +R+ + A + + + +
Sbjct: 308 MKYSDIDIILLKGDVEGGSGGDD--------TISDWNLRKCSAAALDVLANVYRDELLPH 359
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419
Query: 1519 GQTALQQ----VGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVD 1570
L + V S + + L+ LL + D N + + L + T
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE--ACTEL 477
Query: 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 1630
P LA ++ + + + +G + V + YI +L+P + +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 1631 ---------PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE------- 1674
P+ E S A A+ S E + V+ + L N
Sbjct: 538 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597
Query: 1675 ------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
SG A+GL + L V +IL + + + VR L
Sbjct: 598 PDKDFMIVALDLLSGLAEGLGGNIEQL--VARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-------YATTSLPL 1775
L ++ + + +P + L E SV + A A + Y L
Sbjct: 656 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQ 715
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804
L+ + + +++ +G L +
Sbjct: 716 LVEIINRPNTPKT--LLENTAITIGRLGY 742
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 96.4 bits (239), Expect = 7e-20
Identities = 39/272 (14%), Positives = 99/272 (36%), Gaps = 10/272 (3%)
Query: 2312 PQLQTTFIKCLQDST---RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368
Q ++ L++S T++ + L +L+ + + +L+ L+ D R
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEPTRSL 67
Query: 2369 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA 2428
LK +K ++ + V + S + + +R + ++ ++ E
Sbjct: 68 SGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP 127
Query: 2429 DLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---FLSILDRLKSSLKDEK 2485
DLL +L +L S + G+ + + L ++ + K
Sbjct: 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS 187
Query: 2486 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545
+R + + + ++ + Q+ + + + ++ + D+ EVR+ AL + +
Sbjct: 188 PKIRSHAVACVNQFIISRTQALMLH---IDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244
Query: 2546 ANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
++ H+ + + +D V L A
Sbjct: 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 9e-32
Identities = 121/850 (14%), Positives = 253/850 (29%), Gaps = 169/850 (19%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS- 1683
LV P + + AA+ I ++ + +P+L+ ++D ++ + + L
Sbjct: 102 TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161
Query: 1684 --EVLAALGTVYFEH---ILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQF--QNY 1734
E IL I++ + +VR L + +
Sbjct: 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE 221
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE----DGIFNDNWR 1790
++ + + E+ V+ AA G ++ Y T P + A+ + + N +
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 1791 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850
+ +VE ST I L +
Sbjct: 282 VASMTVEFW-------------------------STICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE---RRQVAGR 1907
S +K+++P L+N L + AG
Sbjct: 317 FALSS-----------------------IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967
L + G +L ++ + + + + R+ + +M K Q ++ + +
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413
Query: 1968 PTIRTALCDSILEVRESAGLAFSTLFKS-----AGMQAIDEIVPTLLHALEDDQ------ 2016
P+I + D L+V+E+ + S Q + +V L L+D
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNC 473
Query: 2017 --TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH--------ALGALAEVAGP 2066
T ++ L + P ++ L+ N AL + E A
Sbjct: 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533
Query: 2067 GLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125
+ +I ++ +G +D L E D + ++ L S +L +
Sbjct: 534 TVAETSASISTFVMDKLGQTMSVDENQLTLE---------DAQSLQELQSNILTVL---A 581
Query: 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA-AAWEALSRVVASV 2184
A IR+S + + A ++ LL DS + + A+S + AS+
Sbjct: 582 AVIRKSPSSVEPV------------ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL 629
Query: 2185 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 2244
K + L+ P L+ L +
Sbjct: 630 GKGFEK-----------------------------------YLETFSPYLLKALNQVDSP 654
Query: 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKG 2303
+ A+G I + E+ + + + L ++I + ++K A+LS I
Sbjct: 655 VS-ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363
G P+L + + D + +
Sbjct: 714 GADFIPYLNDIMALCVAAQNTKP------------------ENGTLEALDYQIKVLEAVL 755
Query: 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423
I+ L + V + + + V +D + +D +A ++G ++
Sbjct: 756 DAYVGIVAGLHDKPEALFPYVGTIFQF-IAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP 814
Query: 2424 DGQLADLLQE 2433
DG + +
Sbjct: 815 DGSIKQFYGQ 824
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 3e-21
Identities = 110/710 (15%), Positives = 234/710 (32%), Gaps = 92/710 (12%)
Query: 1140 SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199
+ NV+ A+ AL + Q +S+ ++ I + + + R
Sbjct: 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAV-RLAALN 203
Query: 1200 ALHSAADVLRTKD-----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
AL + ++ +M + A + +V+ I+ K+ +
Sbjct: 204 ALADSLIFIKNNMEREGERNYLMQVVCE-ATQAEDIEVQAAAFGCLCKIMSKY----YTF 258
Query: 1255 LFPIFENYLN--KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 1312
+ P E L A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF- 317
Query: 1313 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFG 1370
+ S++D P L++ L Q + + A L + G
Sbjct: 318 --------------ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAF 1429
L+ + + + + N + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEP--VLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSS----VQ 1480
+DQ + V+E + ++ Q + V+ + L GL+D + + +
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTIIN 479
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PE 1534
L+ +A P + P +V L + + A + ++++
Sbjct: 480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS-AFSALTTMVEYATDTVAET 538
Query: 1535 IASLVPTLLMGLTDPNDHTKYSLDIL-------LQTTFVNTVDA----------PSLALL 1577
AS+ ++ L + L + LQ+ + + A P +L
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598
Query: 1578 VPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
+ + R L ++ SA + + + + + + Y+ P + K L V
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1637 SVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGTV 1692
A I + + E+ +++ L + + N+ + ++ + +G
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA- 715
Query: 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES 1752
F L DI+ C + P + ++ +Y +VL A+LD
Sbjct: 716 DFIPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYV----G 760
Query: 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
+ L Y T + ED +++V L+GD+
Sbjct: 761 IVAGLHDKPEALFP-YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 92.6 bits (229), Expect = 1e-18
Identities = 107/890 (12%), Positives = 267/890 (30%), Gaps = 112/890 (12%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQS 1477
+ LL + +R +E + +LS + L E+ +
Sbjct: 5 EFAQLLENSILSPDQNIRLTSE----TQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60
Query: 1478 SVQLL-----GAMAYCAPQQLSQCLPKIVP--------KLTEVLTDTHPKVQSAGQTALQ 1524
+ L + Q + + ++ P L P++ +A +
Sbjct: 61 AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIA 120
Query: 1525 QVGSV-IKNPEIASLVPTLLMGLTDPNDHTKY--SLDILLQTTFVNTVDAPSL-----AL 1576
+ + + + L+ ++ SL L + +L +
Sbjct: 121 AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180
Query: 1577 LVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635
L+ IV E S + A + + + + L+ V + EV
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695
++ A + ++ P + L + + A+ + F
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVE----------FW 290
Query: 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755
+ + + +++ A L + + S+ N L +L + D++ +V
Sbjct: 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN-LLNLLTRQNEDPEDDDWNVSM 349
Query: 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
+A + ++ L +L VE I DNWR R+++V G ++
Sbjct: 350 SAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM------------ 397
Query: 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875
+G + + L +L + +D SL V++ I +
Sbjct: 398 ------DGPDKVQRTYYVHQAL-----PSILNLM----NDQSLQVKETTAWCIGRIADSV 442
Query: 1876 PKTL--KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-------LPSIIP 1926
+++ ++ +P ++ + L + + LV +L E P+++
Sbjct: 443 AESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVD 501
Query: 1927 ILSRGLKDPSASRR-QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
L + M + + + L ++
Sbjct: 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALED-DQTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + + + + + + + +D + ++L + +A +
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED----- 616
Query: 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV 2104
F +A+ ALA G G +L T P LL A+ D V A ++
Sbjct: 617 -----DVF--YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669
Query: 2105 IDEEG---VESLVSELLKGVGDNQA--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
++E+ +++++ L + + + A ++ + + G N + ++++ +
Sbjct: 670 LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729
Query: 2160 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219
+ Y + +A+ + P +
Sbjct: 730 AAQNTKPENGT----------------LEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269
+ + Q + + + A +G++ + + S+K+F
Sbjct: 774 PY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 5e-15
Identities = 61/447 (13%), Positives = 141/447 (31%), Gaps = 60/447 (13%)
Query: 2105 IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164
+ E + + L + + I ++A LI P ++ ++
Sbjct: 88 VSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADI--ELPHGAWPELMKIMVDNTGA 145
Query: 2165 SDSTTVA-AAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223
V A+ AL + S + Q L
Sbjct: 146 EQPENVKRASLLALGYMCESADPQSQA--------------------------------L 173
Query: 2224 PKALQPLLPIFLQGLIS--GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 2281
+ +L +QG S S +R A L + + +E ++
Sbjct: 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT 233
Query: 2282 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ----LQTTFIKCLQDSTRTVRSSAALAL 2337
+V++A L I+ K +KP++ Q L +K D + + +
Sbjct: 234 QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVAS------MTV 287
Query: 2338 GKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLK 2397
S + + + A ++ L + L V + + +
Sbjct: 288 EFWSTIC--------EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339
Query: 2398 DLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFL 2457
DD +V +SA + L + +Q + L +L+ + ++ +W R +V+ F + +
Sbjct: 340 PED--DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM 397
Query: 2458 RHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517
P + + L + + + D+ ++E + +GR+ + + +
Sbjct: 398 -DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS-VAESIDPQQHLPGV 455
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVA 2544
+ + + L D +V + ++
Sbjct: 456 VQACLIGL-QDHPKVATNCSWTIINLV 481
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 2e-12
Identities = 91/733 (12%), Positives = 206/733 (28%), Gaps = 94/733 (12%)
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPL 1020
+ IV G + S + + + + + I + +R G + ++Q++ +
Sbjct: 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239
Query: 1021 PRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNA 1080
+ L ++ ++ + + + L + + + + V +
Sbjct: 240 VQAAAFGCLCKIMSKYYTF---MKPYMEQALYALT-------IATMKSPNDKVASMTVEF 289
Query: 1081 VKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALS 1140
I E + S + + S+ + ++ +
Sbjct: 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED------- 342
Query: 1141 HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
++NV ++A L + I + I W R+ +A
Sbjct: 343 -DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA---------DNWRNREAAVMA 392
Query: 1201 LHSAAD----VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DNVSL 1254
S D V RT + + +++ + D + V+ I D D
Sbjct: 393 FGSIMDGPDKVQRTYYVHQALPSILN-LMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD-----PKVHAVVDKLLDVL 1309
L + + D K V L + LA+ A+VD L+
Sbjct: 452 LPGVVQA-CLIGLQDHPK---VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA 507
Query: 1310 NTPS----------EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDK-------- 1351
N A+ V + ++ + ++ +L + +
Sbjct: 508 NRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567
Query: 1352 -YGERRGAAFGLAGVVKGFGISSLKKYG--IAATLREGLADRNSAKRREGALLAFECLCE 1408
E + + V SS++ + L ++SA + A L
Sbjct: 568 SLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA 627
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL---VLPSLLK 1465
LG+ FE Y+ P LL A + V A + + L + ++ L +
Sbjct: 628 SLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ 687
Query: 1466 GLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
+ + R K + + + G +A L I+
Sbjct: 688 MISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQ 747
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
+V + ++ GL D + + + Q + +
Sbjct: 748 IKV-----LEAVLDAYVGIVAGLHDKPEALFPYVGTIFQ-------------FIAQVAED 789
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPI--PEVRSV 1638
T + A ++G++ ++ P I ++ +K+ + +
Sbjct: 790 PQLYSEDATSRAAVGLIGDIAAMF--PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDT 847
Query: 1639 AARAIGSLIRGMG 1651
A A R +
Sbjct: 848 ARWAREQQKRQLS 860
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 1e-09
Identities = 59/395 (14%), Positives = 128/395 (32%), Gaps = 59/395 (14%)
Query: 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 2294
L L+S + AA + + ++ ++ I ++ G P VK A L
Sbjct: 101 LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKI---MVDNTGAEQPENVKRASLL 157
Query: 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQ-----DSTRTVRSSAALALGKLSALSTR--- 2346
L + + + I +Q ++++ VR +A AL
Sbjct: 158 ALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217
Query: 2347 ----VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 2402
+ L+ + + Q D ++ A L ++ + ++ +Y++ +
Sbjct: 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277
Query: 2403 DDDHVRVSAASIL--------------------GIMSQCMEDGQLADLLQELLNLASSPS 2442
+D V + S + D++ LLNL + +
Sbjct: 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337
Query: 2443 -------WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 2495
W + F ++ + I +L+ ++ ++ + + REA+ A
Sbjct: 338 EDPEDDDWNVSMSAGACLQLFAQNCGNHI-----LEPVLEFVEQNITADNWRNREAAVMA 392
Query: 2496 LGRLLLHQIQSGPAN---TTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552
G I GP T V L S+++ ++D S +V+ + +A + +I
Sbjct: 393 FG-----SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447
Query: 2553 V--HVALFGPALAECLKDGSTPVRLAAERCAVHAF 2585
H+ A L+D + +
Sbjct: 448 PQQHLPGVVQACLIGLQDHPKVATNCS--WTIINL 480
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 124 bits (311), Expect = 2e-31
Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 14/266 (5%)
Query: 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ + + IR + A L + +++ LI LL D T V A +
Sbjct: 2 SMEEEEFDIREALANGEHL---EKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMV 58
Query: 2180 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 2239
+ + +P +K + + S ++ P+ ++ ++P+
Sbjct: 59 IAKTREDLYEPM-LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYR 117
Query: 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299
G + + + L E+ + + I + ++ + + K L+ + +
Sbjct: 118 IGDEKTKINVSYALEEIAKAN-----PMLMASIVRDFMSMLSSK-NREDKLTALNFIEAM 171
Query: 2300 IRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 2359
+ PFLP++ I L D VR+SA AL L+ L+ ++ +V L L
Sbjct: 172 GENSFKYVNPFLPRI----INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELN 227
Query: 2360 VSDAGIREAILTALKGVLKHAGKSVS 2385
+ + + + + + +L G S S
Sbjct: 228 DTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 4e-16
Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 46/271 (16%)
Query: 1828 AHGRAIIEVLGRDKRNE-VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1886
A+G + ++L K +E VL L + D +V + A+ + I + ++ L
Sbjct: 15 ANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKL 74
Query: 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIG 1946
+ L S + Q +A G++ ++ E V +IP+L + + V
Sbjct: 75 FSLLKK---SEAIPLTQEIAKAFGQMAKEKPELVKS-MIPVLFANYRIGDEKTKINVSYA 130
Query: 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
L E+ + M ++ + L E + +A + ++ + ++ +P
Sbjct: 131 LEEIAKANPML-----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNPFLP 184
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 2066
+++ L D VR +A AL LA
Sbjct: 185 RIINLLHDGDE------------IVRASA------------------VEALVHLAT---- 210
Query: 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097
LN L ++ L + D V KE
Sbjct: 211 -LNDKLRKVVIKRLEELNDTSSLVNKTVKEG 240
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 7e-16
Identities = 50/265 (18%), Positives = 100/265 (37%), Gaps = 15/265 (5%)
Query: 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486
++ ++ +REA + A+ + VL L++ L+D W ++++ ++ +A
Sbjct: 1 MSMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIA 60
Query: 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 1546
L K+ L + A Q+ K + S++P L
Sbjct: 61 KTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE-KPELVKSMIPVLFANY 116
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
++ TK ++ L+ + + +A +V L ++ E K A + M
Sbjct: 117 RIGDEKTKINVSYALEE--IAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE- 173
Query: 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666
K + P+ LP + +L D VR+ A A+ L + +V L+ L
Sbjct: 174 -NSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHL--ATLNDKLRKVVIKRLEEL 226
Query: 1667 KSDNSNVERSGAAQGLSEVLAALGT 1691
D S++ +G+S +L G
Sbjct: 227 N-DTSSLVNKTVKEGISRLLLLEGH 250
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 7e-16
Identities = 38/261 (14%), Positives = 85/261 (32%), Gaps = 25/261 (9%)
Query: 2322 LQDSTRTVRSSAALA--LGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379
+++ +R + A L K+ ++ + ++ L+ L + + ++ + + K
Sbjct: 3 MEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT 62
Query: 2380 AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS 2439
+K + L + + A G M++ + + ++ L
Sbjct: 63 REDLYEPMLK----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL-VKSMIPVLFANYR 117
Query: 2440 SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
+ + NP ++ SI+ S L + + + + +
Sbjct: 118 IGDEKTKINVSYALEEIAKANPMLMA------SIVRDFMSMLSSKNREDKLTALNFIEAM 171
Query: 2500 LLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFG 2559
G + V L +++ LHD VR A+ AL +A N V +
Sbjct: 172 -------GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI---- 220
Query: 2560 PALAECLKDGSTPVRLAAERC 2580
E L D S+ V +
Sbjct: 221 -KRLEELNDTSSLVNKTVKEG 240
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-15
Identities = 38/239 (15%), Positives = 94/239 (39%), Gaps = 26/239 (10%)
Query: 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDPLVGDLLSSLQVSDA-GI 2365
+ L +L I+ L D TV +A + ++ +P++ L S L+ S+A +
Sbjct: 31 ESVLKKL----IELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPL 86
Query: 2366 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG 2425
+ I A + K + V S + + L D+ +++ + L +++
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPV-----LFANYRIGDEKTKINVSYALEEIAKANPML 141
Query: 2426 QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK 2485
+A ++++ +++ SS + + ++ ++ ++ L R+ + L D
Sbjct: 142 -MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN------PFLPRIINLLHDGD 194
Query: 2486 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 2544
+R ++ +AL L + ++ + L+D SS V + + +
Sbjct: 195 EIVRASAVEALVHL--------ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 1e-13
Identities = 44/262 (16%), Positives = 96/262 (36%), Gaps = 24/262 (9%)
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303
++RE A G L ++ E V+ LI ++ D W V +S + +I +
Sbjct: 9 DIREALANGE-HLEKILIMAKYDESVLK---KLIELLDDDL-WTVVKNAISIIMVIAKTR 63
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRT-VRSSAALALGKLSALSTR-VDPLVGDLLSSLQVS 2361
+P L +L L+ S + A A G+++ V ++ L ++ ++
Sbjct: 64 EDLYEPMLKKL----FSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIG 119
Query: 2362 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421
D + + AL+ + K ++S V+ ++ + +++A + + M +
Sbjct: 120 DEKTKINVSYALEEIAKANPMLMASIVRD-----FMSMLSSKNREDKLTALNFIEAMGEN 174
Query: 2422 MEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481
+ L ++NL R +V N ++ + L
Sbjct: 175 SFK-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK-------VVIKRLEEL 226
Query: 2482 KDEKFPLREASTKALGRLLLHQ 2503
D + + + + RLLL +
Sbjct: 227 NDTSSLVNKTVKEGISRLLLLE 248
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 13/230 (5%)
Query: 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1793
Y + VL +++ L D+ +V A+ V+ + P+L ++ + Q
Sbjct: 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR------DKRNEVLA 1847
+ G + K K+++ + E + L ++
Sbjct: 89 EIAKAFG-QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR 147
Query: 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907
+ S + + AL+ + + N+ K + +P ++N L R A
Sbjct: 148 DFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL----LHDGDEIVRASAVE 203
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS 1957
AL L L +++ +I L L D S+ + V G+S ++ G S
Sbjct: 204 ALVHLA-TLNDKLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLLLEGHS 251
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 1e-10
Identities = 41/292 (14%), Positives = 102/292 (34%), Gaps = 53/292 (18%)
Query: 1745 GLADENESVRDAALGAGH----VLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+ +E +R+A H +++ Y + L L+ ++D D W + ++++ ++
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDD----DLWTVVKNAISIIM 57
Query: 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV 1860
+ + E +++ L +++ ++ +
Sbjct: 58 VI--------------------AKTREDLYEPMLKKL-----------FSLLKKSEAIPL 86
Query: 1861 RQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1920
Q + + P+ +K ++PVL + + + AL E+ + +
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPVLFA----NYRIGDEKTKINVSYALEEIAKANPMLM 142
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
I+ L + + + + ++ K +++ +P I L D
Sbjct: 143 AS-IVRDFMSMLSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGDEI 196
Query: 1981 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED--DQTSDTALDGLKQILS 2030
VR SA A L + + ++V L L D + T +G+ ++L
Sbjct: 197 VRASAVEALVHL--ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 4e-10
Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 16/240 (6%)
Query: 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILS 2030
++ + ++RE+ + + ++ L+ L+DD + A+ + I
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG---PGLNFHLGTILPALLSAMGDDD 2087
R P +L KL L + +A+ G + +++P L + D
Sbjct: 62 TREDLYEP-MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD 120
Query: 2088 MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 2147
+ A E + + + S+V + + + + ++ I +NS Y+
Sbjct: 121 EKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYV 179
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207
P +I LL D D A+A EAL + K KV+ + D
Sbjct: 180 NPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTS 230
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 18/236 (7%)
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
++ + L + K A I+ + T P + L +KK +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAK--TREDLYEPMLKKLFSLLKK---SEAIPLT 87
Query: 1637 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696
A+A G + + E ++ L + + + + L E+ A +
Sbjct: 88 QEIAKAFGQMAKEKPEL-VKSMIPVLFANYRIGDEKT-KINVSYALEEIAKANPML-MAS 144
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
I+ D + S + + L ++G Y+ LP I++ L D +E VR +
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFI----EAMGENSFKYVNPFLPRIINLLHDGDEIVRAS 200
Query: 1757 ALGA-GHV-LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810
A+ A H+ + + L + D + + ++ E + LL +S
Sbjct: 201 AVEALVHLATLNDKLRKVVIKRLEELND----TSSLVNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 9e-08
Identities = 38/239 (15%), Positives = 86/239 (35%), Gaps = 23/239 (9%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
L + L + V A + D + L LFSL + + +
Sbjct: 37 LIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS-----EAIPL----T 87
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
Q IA A A +I + + + A +++ + N L
Sbjct: 88 QEIAKAFGQMAKEKPELVKSMIPVLFA--NYRIGDEKTKINVSYA----LEEIAKANPML 141
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 1314
+ I ++++ +S + + + F A+ ++ K V+ + +++++L+ E
Sbjct: 142 MASIVRDFMSMLSSKNRE---DKLTALNFIEAMGENSFKY---VNPFLPRIINLLHDGDE 195
Query: 1315 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373
V+ + L L D+ +V + L++L + + G++ ++ G SS
Sbjct: 196 IVRASAVEALVHLATL-NDKLRKVVIKRLEELNDTSSL-VNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 29/276 (10%)
Query: 1224 ALADTNADVRGRMLNA----GIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ + D+R + N I+I+ K+ + L + + D+ V +
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLD--------DDLWT--VVKN 51
Query: 1280 VVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT-PSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ +AK ++ KL +L + + + ++ + + + ++
Sbjct: 52 AISIIMVIAKTREDL---YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSM 108
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ L D+ + ++ L + K + I L+ +N +
Sbjct: 109 IPVLFANYRIGDEK-TKINVSYALEEIAKANPMLMAS---IVRDFMSMLSSKNREDKLTA 164
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
E +G YV LP ++ D VR +A A ++ L+ + K+
Sbjct: 165 LNF-----IEAMGENSFKYVNPFLPRIINLLHDGDEIVRASA-VEALVHLATLNDKLRKV 218
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
V+ L+ L D + ++ + + + S
Sbjct: 219 VIK-RLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 93.8 bits (232), Expect = 6e-19
Identities = 107/661 (16%), Positives = 194/661 (29%), Gaps = 197/661 (29%)
Query: 1244 IDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 1303
+D + +FE+ ++ D+ + I + H+ V
Sbjct: 14 HQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGT-L 65
Query: 1304 KLLDVL-NTPSEAVQRAVSSCLSP----LMQSMQDE--APTLVSRL----LDQLMKS--- 1349
+L L + E VQ+ V L LM ++ E P++++R+ D+L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 1350 ---------DKYGERRGAAFGL---AGVV----KGFGISSLKKYGIAATLREGLADRNSA 1393
Y + R A L V+ G G + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLS-------- 173
Query: 1394 KRREGALLAFEC----LCEKLGRLFEP-YVIQMLPLLLVAF-------SDQVVAVR---E 1438
+ L L P V++ML LL SD ++
Sbjct: 174 ---YKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1439 AAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498
+ + R ++ + LVL + + A C
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL--------LNVQ-----NAKAWNAFNL-------SC-- 266
Query: 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA--SLVPTLLMGLTDPNDHTKYS 1556
KI+ LT T +QV + SL M LT
Sbjct: 267 KIL------LT-----------TRFKQVTDFLSAATTTHISLDH-HSMTLTPDE-----V 303
Query: 1557 LDILLQTTFVNTVDAPSLA-----LLVPIVHRGLRERSA-------ETKKKAAQIVGNMC 1604
+LL+ D P + I+ +R+ A K I+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESS 362
Query: 1605 SLVTEPKDMIP-YIGL-LLPE-VK---KVLV----DPIP-EVRSVAARAIG-SLIRGMGE 1652
V EP + + L + P +L D I +V V + SL+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1653 EN---FPDLVSWLLD-ALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIRN--C 1705
E+ P + L+ +K +N + RS + + T + ++P +
Sbjct: 423 ESTISIPSI---YLELKVKLENEYALHRS-----IVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 1706 S----HQRASVRDGYLTLFKYLPRSLGVQFQNY--LQQVL----------PAILDGLAD- 1748
S H + +TLF+ + F ++ L+Q + +IL+ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV-------FLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 1749 --------ENESVRDAALGA--------GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792
+N+ + + A L+ T L + L A ++ IF + +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 1793 Q 1793
Q
Sbjct: 588 Q 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 1e-16
Identities = 110/721 (15%), Positives = 205/721 (28%), Gaps = 240/721 (33%)
Query: 723 MSITPKDTYVAF-EKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
KD F + + + DC D+Q P+ +LS E+ I I+ +K+
Sbjct: 14 HQYQYKDILSVFEDAFVDNF-DCK--------DVQDM--PKSILSKEE---IDHIIMSKD 59
Query: 782 TKQSKGR-FRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD---IGKSTKKADKGKTA 837
R F + + E + V + + + K + +
Sbjct: 60 AVSGTLRLFWTLLSK------------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 838 K----EEARELLLNEEASIREKVQGVQRNLSLML---SALGEMAIANPVFAHSQL----P 886
E R+ L N+ K V R L L AL E+ A V L
Sbjct: 108 MTRMYIEQRDRLYNDNQVFA-KYN-VSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 887 SLVKFV--DPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSD 944
+ V +Q + + + + L C + L++ L + SD
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETV---LEMLQKLLYQIDPNWTSRSD 218
Query: 945 L---IPSVGEAAKNKESL---------CLF-------ERIVNGLTVSCKSGPLPVDSFTF 985
I + + + CL + N +SCK
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----------- 267
Query: 986 VFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGS 1045
ILL+ + + D + H+
Sbjct: 268 -------ILLTTRFKQVTDFLSAATTTHI------------------------------- 289
Query: 1046 ALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA 1105
+L+ + L P+EV S L + L+ + LP + + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLL-----------LKYLD-------CRPQDLPREVLTTNPRRLS 331
Query: 1106 VHDPEKSVAEAAED---IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAE--ALATALDE 1160
+ +AE+ D WD + + + L + S NV L AE + L
Sbjct: 332 I------IAESIRDGLATWDNWKH---VNCDKLTTIIESS-LNV-LEPAEYRKMFDRLSV 380
Query: 1161 YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFL 1220
+P S L + W + D+ V++ L
Sbjct: 381 FPPSAHIPTILLSLI---------------WFD--------------VIKSDVMVVVNKL 411
Query: 1221 ISRALADTNA------------DVRGRMLNAGIM---IIDKH----GRDNVSLLFPIFEN 1261
+L + +++ ++ N + I+D + D+ L+ P +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 1262 Y--------LNKKASDEEKYDLVR---------EGVVIFTGALA---------------- 1288
Y L K E+ L R E +
Sbjct: 472 YFYSHIGHHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 1289 -KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM 1347
++ +DPK +V+ +LD L E + + + L L ++ E + Q+
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIALMAEDEAIFEEAHKQVQ 588
Query: 1348 K 1348
+
Sbjct: 589 R 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 2e-13
Identities = 92/610 (15%), Positives = 183/610 (30%), Gaps = 154/610 (25%)
Query: 143 HIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKS 202
HI+M + + F+ L S+ ++ + + +E+ + SP ++ +
Sbjct: 53 HIIMSKD-AVSGT-LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQ 104
Query: 203 PSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKR 262
PS+ + +Y++ + ++ F ++SR + L ++ L+
Sbjct: 105 PSMMTR-------MYIEQR-----DRLYNDNQVFAKY--NVSRLQ-PYLKLRQALLELRP 149
Query: 263 NPEIILES---IGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKS 319
++++ G K+ + L V LS K L + +
Sbjct: 150 AKNVLIDGVLGSG---KTW---V------ALDVCLSYKVQCKMDFKIFWLNL-KNCNSPE 196
Query: 320 SNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK-YLNSL------- 371
+ + L+ + Y I + RI + EL + K Y N L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQ 254
Query: 372 -SLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDL-----LSFFASGLKEK 425
+ F LSC K IL + + K+ D + + L + L
Sbjct: 255 NAKAWNAFNLSC---------K--IL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 426 EALRRGHLRCLRVICTNTDA------VLQVSSLLGPL-IQLVKTGFTKAVQRLDGIYAFL 478
E L + + VL + P + ++ + D + +
Sbjct: 302 EVKS------LLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDN-WKHV 350
Query: 479 IVGKIAAADIKA-----EETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVV 533
K+ I++ E ++ L + +PT ++S + D + V ++V
Sbjct: 351 NCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 534 LLVEHS----HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITS--------- 580
L ++S T S + + L + H R I+
Sbjct: 410 KLHKYSLVEKQPKESTIS---IPSIYLELKVKL--ENEYALH---RSIVDHYNIPKTFDS 461
Query: 581 ---VP-------------HLSEALLLE----FSN-FLSL--VGEKIIISKT------SDT 611
+P HL E F FL + +KI T S
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 612 DDFVDSQV--PFL----PSVEVQVKTL---LVIASVALARGPSAS-ARVIFCSHHPSIVG 661
+ + P++ P E V + L L R+ + +I
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 662 TGKRDAVWQR 671
+ QR
Sbjct: 582 EAHKQV--QR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-10
Identities = 75/652 (11%), Positives = 176/652 (26%), Gaps = 172/652 (26%)
Query: 1964 DELIPTIRTALCDSILEV--RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD------ 2015
D + D I+ S L S + + + V L +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMS 96
Query: 2016 ----QTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LSAFNAHAL-GALAEV-AGPGL 2068
+ ++ I + K ++ L + L AL E+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPY--LKLRQALLELRPAKNV 153
Query: 2069 NFH--LG---TILPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVS 2115
LG T + + + +L + L E ++ L+
Sbjct: 154 LIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL----EMLQKLLY 207
Query: 2116 EL---LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD-SDSTTVA 2171
++ D+ ++I+ + + L+ P L+ L + ++
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPYENCLLV--LLNVQNAKA-- 258
Query: 2172 AAWEAL---SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228
W A +++ + + +V D +S + +
Sbjct: 259 --WNAFNLSCKIL------LTTRFKQVT-DFLSAATTTHISLDH----HSMTLTPDEVKS 305
Query: 2229 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP--- 2285
+ L+ L +L + + + +E S+++ L D +
Sbjct: 306 ----LLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDG-------LATW--DNWKHVN 351
Query: 2286 -WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC------------------LQDST 2326
++ + I S+L+ L+P + + F +
Sbjct: 352 CDKLTTIIESSLN--------VLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 2327 RTVRSSAALALGKLSALSTRVDPL---VGDLLSSLQVS---DAGIREAILTALKGVLKHA 2380
V L K S + + + + L+V + + +I+
Sbjct: 402 SDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 2381 GKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL-LNLAS 2439
+ + Y + +H + E + L + + L+
Sbjct: 461 SDDL-IPPYLDQY-FYSHIGHH---------------LKNI-EHPERMTLFRMVFLDF-- 500
Query: 2440 SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF-----PLREASTK 2494
+ + +RH+ +A + S L+ L +LK + + P E
Sbjct: 501 --RFLEQK---------IRHDSTAWNASGSILNTLQQLK---FYKPYICDNDPKYERLVN 546
Query: 2495 ALGRLLLHQIQSGPANTTVVVDILASVV-SALHDDSSEVRRRALSALKSVAK 2545
A+ L ++ ++ AL + + A K V +
Sbjct: 547 AILDFLPK------IEENLICSKYTDLLRIALMAEDEAI---FEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 2e-10
Identities = 119/771 (15%), Positives = 215/771 (27%), Gaps = 254/771 (32%)
Query: 1650 MGEEN--FPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
GE + D++S DA + +V+ +L+ +HI+
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-----PKSILS---KEEIDHII------- 55
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL----PAILDGLADENESVRDAALGAG 1761
G L LF L Q ++++VL ++ + E R ++
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSM--- 107
Query: 1762 HVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV---ELLGDLLFKVAGTSGKALLEGG 1818
+ Y D ++NDN + +V + L +ALLE
Sbjct: 108 --MTRMYIEQ---------RDRLYNDNQVFAKYNVSRLQPYLKLR--------QALLE-- 146
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV-WKTI-VANTP 1876
+ G VLG K +A V + + + W + N+P
Sbjct: 147 -LRPAKNVLIDG-----VLGSGK--TWVAL--DVCLSYKV-QCKMDFKIFWLNLKNCNSP 195
Query: 1877 KTLKEIMPVLMNTL---ISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933
+T+ E++ L+ + +S + SS + EL R L + L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NCL- 247
Query: 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTL 1992
+ L V ++ AF+
Sbjct: 248 -----------LVLLNV------------------------QNAKAWN-------AFN-- 263
Query: 1993 FKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052
LL T KQ+ + A HI L H ++
Sbjct: 264 LSC----------KILL------TTRF------KQVTDFLSAATTTHI--SLDHHSMTLT 299
Query: 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES 2112
L + Q L +E T + S
Sbjct: 300 PDEVKSLLLKYLD----------------------CRPQDLPREVLTTNPRRL------S 331
Query: 2113 LVSELLKG-----------VGDNQASIRRSS-AYLIGYFYKNSKLY-----LVDEAPNMI 2155
+++E ++ D +I SS L Y+ K++ A
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPT 389
Query: 2156 STLIVLLSDSDSTTVAAAWEALSR--VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKG 2213
L ++ D + V L + +V PKE I I + + E +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHR- 447
Query: 2214 GPILIPGFCLPKALQP--LLPIFLQGLISGSAELREQAALGLG-ELIEVTSEQSLKEFVI 2270
++ + +PK L+P +L +G L + + + F
Sbjct: 448 --SIVDHYNIPKTFDSDDLIPPYLDQYF----------YSHIGHHLKNIEHPERMTLF-- 493
Query: 2271 PITGPLI---------RIIGDRFPWQVKSAILSTLS-IIIRKGGI------------ALK 2308
++ +I D W +IL+TL + K I A+
Sbjct: 494 ----RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 2309 PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 2359
FLP+++ I T +R AL + + + +Q
Sbjct: 550 DFLPKIEENLICS--KYTDLLR----------IALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 3e-10
Identities = 96/677 (14%), Positives = 178/677 (26%), Gaps = 245/677 (36%)
Query: 32 DVTSLIRNTEMSPEIASFL--------VDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTF 83
DV + ++ EI + +F T + +K V++V+ F
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---F 93
Query: 84 MKT-FAAALVQAMEKQSKFQS---------------HVGCYRL-----LKWSCLL-LSKS 121
+ + Q + +V RL L+ LL L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLR-QALLELRPA 150
Query: 122 QFATV------SKNALCRVAAAQASLLHIVMQR--------SFRERRACK------QTFF 161
+ + K + A L + V + + + + + Q
Sbjct: 151 KNVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 162 HL----FSQSPDIYKTY---TDELKDA--RI----PYKHSPELICLLLEFLS--KSPSLF 206
+ ++ D ++ R+ PY++ CLL+ L ++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLLV--LLNVQNAKAW 259
Query: 207 E----KCRPIFL--DIYVKAVLNAK-------EKPMKGL----SESFLPLFTHMSREDFQ 249
C+ + V L+A + L +S L + +D
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-- 317
Query: 250 SIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGAL 309
LP +L NP L I ++ L +H + + T
Sbjct: 318 ---LPRE--VLTTNP-RRLSIIAESIRD-GLATWDN-----------WKHVNCDKLT--- 356
Query: 310 TIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLN 369
TII S P MF + +V FP ++
Sbjct: 357 TIIE-SSLNVLEPAEYRKMFDRL-SV---------FP-----------PSAHIPTI---- 390
Query: 370 SLSLTICKFLLSCYKDEGNEEV---KLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
+ L+ + + V KL S V K S I + L+ +
Sbjct: 391 ----LLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEY 443
Query: 427 ALRR---GHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDG-IYAFLIVGK 482
AL R H + ++ L P LD Y+ + G
Sbjct: 444 ALHRSIVDHYNIPKTFDSDD---------LIPP-------------YLDQYFYSHI--GH 479
Query: 483 -IAAADIKAEETVTKEKL-----WSLVSQNEPSLVPTAMISKLSVDD--CMACVELLVVL 534
+ + E + + + K+ D A +L L
Sbjct: 480 HLKNIE-HPERMTLFRMVFLDFRF--------------LEQKIRHDSTAWNASGSILNTL 524
Query: 535 LVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIIT-SVPHLSEALLLEFS 593
++ + I + P E L+
Sbjct: 525 Q-----------------------------QLKFY-----KPYICDNDPKY-ERLVNAIL 549
Query: 594 NFLSLVGEKIIISKTSD 610
+FL + E +I SK +D
Sbjct: 550 DFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 3e-10
Identities = 66/431 (15%), Positives = 128/431 (29%), Gaps = 115/431 (26%)
Query: 2244 ELREQAALGLGELIEVTSEQSLKEF----VIPITGPLIR------IIGDRFPWQVKSAIL 2293
E E +++ V + + F V + ++ II + S L
Sbjct: 10 ETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK---DAVSGTL 65
Query: 2294 STLSIIIRKGGIALKPFLPQ-LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVG 2352
++ K ++ F+ + L+ + K L +T + ++ + D L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSM---MTRMYIEQRDRLYN 121
Query: 2353 D--LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY-------SVLKDLVYHD 2403
D + + VS R L+ L + A + + + + V
Sbjct: 122 DNQVFAKYNVS----RLQPYLKLRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 2404 DDHVRVSAASILGI-MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462
I + + C + ++LQ+LL P+W +R + S
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRS-----------DHSS 221
Query: 2463 AISMSPLFLSILDRLKSSLKDEKFP-----LREAST----KALG---RLLLHQIQSGPAN 2510
I + SI L+ LK + + L A ++LL
Sbjct: 222 NIKLR--IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--------- 270
Query: 2511 TT---VVVDILAS----VVSALHDDSSEVRRRALSAL------------KSVAKANPSAI 2551
TT V D L++ +S H + S L + V NP +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 2552 MVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDA----- 2606
++ E ++DG + ++ + + + L+
Sbjct: 331 ----SIIA----ESIRDG--LATW--DN-----WKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 2607 --RRLSKFPEH 2615
RLS FP
Sbjct: 374 MFDRLSVFPPS 384
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 4e-10
Identities = 84/528 (15%), Positives = 160/528 (30%), Gaps = 156/528 (29%)
Query: 1011 YKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKD 1070
+ HMD Y ++ ++ A + C +V + +K+
Sbjct: 4 HHHMD-------FETGEHQYQYKDILSVFEDAFVDNFD--C-----KDVQDMPKSILSKE 49
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSL-WIAVHDPEKSVAEAAEDIWDRYGYDF- 1128
+ I + + + L W + E+ V + E++ R Y F
Sbjct: 50 E---------IDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFL 94
Query: 1129 --------------GTDYSGLFKALSHSN-----YNV-RLAAAEALATALDEYPDSIQGS 1168
Y L + N YNV RL L AL E +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKN- 152
Query: 1169 LSTLFSLYIRDIGLGGDNVDAG--WLGRQGIALALHSAADVLRTKDLPVIMTFLI---SR 1223
+ G+ G +G W+ A DV + + M F I +
Sbjct: 153 ----VLID----GVLG----SGKTWV-----------ALDVCLSYKVQCKMDFKIFWLNL 189
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
++ V ML + ID + I L + E L++ +
Sbjct: 190 KNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKP--Y 243
Query: 1284 TGALAKHLAKDD---PKVHAVVD---KLLDVLNTPSEAVQRAVSS------CLSPLMQSM 1331
L L + K + K+L L T + V +S+ L ++
Sbjct: 244 ENCL---LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 1332 -QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR 1390
DE +L+ + LD + L V + + IA ++R+GLA
Sbjct: 299 TPDEVKSLLLKYLD--CRPQD----------LPREVL--TTNPRRLSIIAESIRDGLATW 344
Query: 1391 NSAKRREGALLAFECLCEKLGRLFE-------PYVIQMLPLLLVAFSD------QVVAV- 1436
++ K C+KL + E P + + L F ++++
Sbjct: 345 DNWKHVN---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 1437 -REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1483
+ + ++++L SL++ + K+S++ +
Sbjct: 396 WFDVIKSDVMVVVNKLHKY-------SLVEK------QPKESTISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 3e-07
Identities = 80/552 (14%), Positives = 173/552 (31%), Gaps = 165/552 (29%)
Query: 1371 ISSLKKYGIAATLREGLADR------NSAKRREGALLAFECLCEKLGRLFEPYVIQML-- 1422
+ + + + L+ S G L F L K + + +V ++L
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1423 --PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
L+ E +MM+++ + D+ + Q
Sbjct: 90 NYKFLMSPI---------KTEQRQPSMMTRMYIEQR------------DRLYN----DNQ 124
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLT--DTHPKV-----QSAGQTALQQVGSVIKNP 1533
+ A +S+ + KL + L V +G+T + V +
Sbjct: 125 VF------AKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSY 174
Query: 1534 EIASLVPT----LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 1589
++ + L + N ++ ++ +LQ +D + + LR S
Sbjct: 175 KVQCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS 229
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ + + L+ PY LL VL + ++ A + I
Sbjct: 230 IQAELR---------RLLKSK----PYENCLL-----VL-LNVQNAKAWNAFNLSCKI-- 268
Query: 1650 MGEENFPDLV----SWLLDALKSDN-SNVERSGAAQGLSE-----VLA-ALGTVYFEHIL 1698
L+ + D L + +++ + L+ +L L + L
Sbjct: 269 --------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--L 318
Query: 1699 PDIIRNCSHQR-----ASVRDGYLTL--FKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
P + + +R S+RDG T +K++ + L ++ + L+ L + E
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVL-EPAE 370
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL-GDLLFKVAGTS 1810
R + + L +F + I + L+ D++
Sbjct: 371 -YR-----------KMF--DRL---------SVFPPSAHIPTILLSLIWFDVIK------ 401
Query: 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWK 1869
SD + H +++E + E ++ + ++ + + + ALH +
Sbjct: 402 --------SDVMVVVNKLHKYSLVE---KQ-PKESTISIPSIYLELKVKLENEYALH--R 447
Query: 1870 TIVA--NTPKTL 1879
+IV N PKT
Sbjct: 448 SIVDHYNIPKTF 459
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 91.8 bits (227), Expect = 2e-18
Identities = 112/807 (13%), Positives = 243/807 (30%), Gaps = 142/807 (17%)
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE-RSGAAQGLSEVL 1686
V P A + + EN P + L L + ++ R
Sbjct: 10 TVSPDRLELEAAQKFLERAA----VENLPTFLVELSRVLANPGNSQVARV---------A 56
Query: 1687 AALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
A L I+N + + ++ Y + + N ++V +L
Sbjct: 57 AGL-----------QIKNSLTSKDPDIKAQYQQRWLAID-------ANARREVKNYVLHT 98
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW--RIRQSSVELLGDLL 1803
L E A+ + P L+P + + N N +++S++E +G +
Sbjct: 99 LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158
Query: 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1863
D + + I+ + M + + S +V+ A
Sbjct: 159 ---------------QDIDPEQLQDKSNEILTAI----------IQGMRKEEPSNNVKLA 193
Query: 1864 ALHVWKTIVANTPKTLK--EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921
A + + T +M + + + R A + L +++ + +
Sbjct: 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253
Query: 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
+ P L + S V + E ++ ++ +L A
Sbjct: 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-----DLAIEASEAAEQGRPPE 308
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---------TALDGLKQILSVR 2032
S A A+ +VP L L +D A L + +
Sbjct: 309 HTSKFYA---------KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359
Query: 2033 TTAVLPHILPKLVHLPLSAFNAH------ALGALAEVAGPG-LNFHLGTILPALLSAMGD 2085
++PH+LP + + + A G + E P L + +P L+ M D
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 2086 DDMDVQS-----LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ-------------AS 2127
+ V+ + + I++ + L+ L++G+ A
Sbjct: 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE 479
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASV 2184
+A + + + L ++ L+ D + ++A+E+L +V +
Sbjct: 480 AAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539
Query: 2185 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 2244
K+ P+ K +++ L + LQ I +
Sbjct: 540 AKDCYPAVQKTT------------------LVIME--RLQQVLQMESHIQSTSDRIQFND 579
Query: 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKG 2303
L+ L ++ Q + + L+R+ V+ L +S ++
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRT-VRSSAALALGKLS-ALSTRVDPLVGDLLSSL--- 2358
G ++ + L++ V +A +G L AL + + P +++ L
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN 699
Query: 2359 ---QVSDAGIREAILTALKGVLKHAGK 2382
+ ++ IL+ + G
Sbjct: 700 LGNENVHRSVKPQILSVFGDIALAIGG 726
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 1e-15
Identities = 118/860 (13%), Positives = 242/860 (28%), Gaps = 120/860 (13%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L EAA+ + + + + + L L + L + + ++ +
Sbjct: 6 ILEKTVSPDRLELEAAQ----KFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 1483 ------------GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ ++ + L + SA Q + I
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEI 121
Query: 1531 KNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRGL 1585
+ L+P L+ +T+PN H K S + ++ + +G+
Sbjct: 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM 181
Query: 1586 R--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
R E S K A + N D ++ V + P VR A + +
Sbjct: 182 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
++ + + L + A QG+ D+
Sbjct: 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN------VCDEEMDLAI 295
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
S R T Y +L L Q L + D++ + AA +
Sbjct: 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPI-LTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE------- 1816
L +P +LP +++ I N +WR R ++V G +L + K L+
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 1817 GGSDDE-----GASTEAHGR---AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868
D + GR + E D L + V +
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAF 474
Query: 1869 KTIVANT--------------PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
++ L +++ L+ + + + A L+
Sbjct: 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534
Query: 1915 KLG----------ERVLPSIIP-----------ILSRGLKDPSASRRQGVCIGLSEVMAS 1953
+ ++ I+ I S + + +C L V+
Sbjct: 535 IVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSI--LEVRESAGLAFSTLFKSAG---MQAIDEIVPTL 2008
L D ++ ++ + V+E A +A STL + G ++ ++ P L
Sbjct: 595 VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL 654
Query: 2009 LHALEDDQTSDT-----ALDG---------LKQILSVRTTAVLPHILPKLVHLPLSAFNA 2054
L++ L G + +L ++ + VH +
Sbjct: 655 GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQIL 714
Query: 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV 2114
G +A G +L +L L A + + E
Sbjct: 715 SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RESCLEAY 769
Query: 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST--TVAA 2172
+ +++G+ +Q ++ + ++S + + D D T VA
Sbjct: 770 TGIVQGLKGDQENVHPDVMLVQPR------------VEFILSFIDHIAGDEDHTDGVVAC 817
Query: 2173 AWEALSRVVASVPKEVQPSY 2192
A + + + K+V
Sbjct: 818 AAGLIGDLCTAFGKDVLKLV 837
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 80.3 bits (197), Expect = 7e-15
Identities = 103/774 (13%), Positives = 232/774 (29%), Gaps = 107/774 (13%)
Query: 1391 NSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 1447
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 1448 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 1503 KLTEVLTDTH--------------------PKVQSAGQTALQQVGSVIKNPEIAS----- 1537
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 1538 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW- 380
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ AA + EP + P + +P + +++ DP VR AA +G + +
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 1652 E-----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS 1706
E L+ L++ L V + +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLS-AEPRVASNVCW-----------------AFSSLAEAAY 482
Query: 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766
D L + Q L D ++R +A + +V+
Sbjct: 483 EAADVADDQEEPATYCL-----SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537
Query: 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826
+ A P + + E L +L + + +D +
Sbjct: 538 NSAKDCYPAVQKTTLVIM------------ERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585
Query: 1827 EAHGRAIIEVLGRDKR---NEVLAALYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKE 1881
+ +V +D + V+A+L + S V++ AL T+V +
Sbjct: 586 ATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645
Query: 1882 IMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSA 1937
M L L + + A +G+L R L ++P ++ +L L + +
Sbjct: 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV 705
Query: 1938 SR--RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
R + + + +A A + +++ ++ T++ A + + + L
Sbjct: 706 HRSVKPQILSVFGD-IALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL--- 761
Query: 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH 2055
++ E ++ L+ DQ + L Q +L I +
Sbjct: 762 --RESCLEAYTGIVQGLKGDQENVHPDVMLVQPR---VEFILSFIDHIAGDEDHTDGVVA 816
Query: 2056 A----LGALAEVAGPGL--NFHLGTILPALLS-AMGDDDMDVQSLAKEAAETVT 2102
+G L G + ++ LL+ ++LA+ A + +
Sbjct: 817 CAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELR 870
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 1e-14
Identities = 116/863 (13%), Positives = 272/863 (31%), Gaps = 159/863 (18%)
Query: 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK-- 1265
++LP + L R LA+ R+ AG+ I +++++ P + +
Sbjct: 28 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGLQI-----KNSLTSKDPDIKAQYQQRW 80
Query: 1266 KASDEEKYDLVREGVV-----------IFTGALAKHLAKDDPKVH--AVVDKLLDVLNTP 1312
A D V+ V+ + +A + P ++ +L+ + P
Sbjct: 81 LAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP 140
Query: 1313 S--EAVQRAVSSCLSPLMQS-----MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGV 1365
+ E ++ + + + Q +QD++ +++ ++ + K + + AA
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200
Query: 1366 VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECL---CEKLGRLFEPYVIQML 1422
F ++ K + + + + + A + L + E Y+ L
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260
Query: 1423 PLLLVAF--SDQVVAVREAAEC------AARAMMSQLSAQGVKLVLPSLLKGL------- 1467
+ + SD + E + + S + P
Sbjct: 261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320
Query: 1468 -----------------EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 1510
+D W +++ L +A C +P ++P + E + +
Sbjct: 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKN 377
Query: 1511 THPKVQSAGQTALQQVGSVIK----NPEIASLVPTLLMGLTDPNDHTKYS----LDILLQ 1562
+ + A A + + P + +PTL+ + DP+ + + + + +
Sbjct: 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD---------- 1612
++ LA L+ + GL ++ E D
Sbjct: 438 LLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496
Query: 1613 --MIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEENFP----------- 1656
+ L++ ++ + P +RS A ++ +++ ++ +P
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 1657 ------DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR------N 1704
+ S + N +S L VL + I ++
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALG---- 1759
+ V++ L L LG +F Y++ P + GL + V AA+G
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1760 ---AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816
A + + + LLL + + + + ++ + + GD+ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHRS--VKPQILSVFGDIALAI---------- 724
Query: 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV---- 1872
G + + ++ L + + +V + Y + D +R++ L + IV
Sbjct: 725 ------GGEFKKYLEVVLNTLQQASQAQVDKSDYDMV-DYLNELRESCLEAYTGIVQGLK 777
Query: 1873 ---ANTPKTLKEIMPVLMN-----TLISSLASSSSERRQVAGRALGELVRKLGERVL--- 1921
N + + P + I+ + A +G+L G+ VL
Sbjct: 778 GDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837
Query: 1922 ---PSIIPILSRGLKDPSASRRQ 1941
P I +L+ G + + +
Sbjct: 838 EARPMIHELLTEGRRSKTNKAKT 860
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 8e-14
Identities = 97/704 (13%), Positives = 199/704 (28%), Gaps = 136/704 (19%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
+ +A + VR+AA + L + Y ++
Sbjct: 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYME---------------------------- 253
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
+ + + A+ +V +
Sbjct: 254 ----------------TYMGPALFAITIEAMKSDIDEVA---------------LQGIEF 282
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 1314
+ + ++ E + R L P + + K + +
Sbjct: 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 342
Query: 1315 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 1374
+A CL L +D+ V + + +K+ + R A +++G S L
Sbjct: 343 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402
Query: 1375 KKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF--EPYVIQMLPLLLVAFS 1430
K TL E + D + R+ A +CE L + Y+ +L L+
Sbjct: 403 KPLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL- 460
Query: 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
V C A SL + + + + A
Sbjct: 461 SAEPRVASNV-CWA---------------FSSLAEAAYE--------AADVADDQEEPAT 496
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PEIASLVPTLL- 1543
LS IV KL E + +A + + ++KN P + ++
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 1544 -MGLTDPNDHTKYSLD-----ILLQTTFVNTVDAPSLALLVPIVHR-------------G 1584
+ + S LQ+ T+ + +
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAI 1643
S ++ A V + ++ + + Y+ P + L + +V A +
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGG--EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLV 674
Query: 1644 GSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYFEHILP 1699
G L R + +++ LL+ L ++N + + ++ A+G F+ L
Sbjct: 675 GDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-EFKKYLE 733
Query: 1700 DIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758
++ +A V + YL + + + I+ GL + E+V +
Sbjct: 734 VVLNTLQQASQAQVDKSDYDMVDYL-----NELRESCLEAYTGIVQGLKGDQENVHPDVM 788
Query: 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LV+ L + D D + + L+GDL
Sbjct: 789 -----LVQPRVEFILSFIDHIAGDEDHTDG--VVACAAGLIGDL 825
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 6e-12
Identities = 80/555 (14%), Positives = 166/555 (29%), Gaps = 75/555 (13%)
Query: 1144 YNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203
+N AA L D I + +I++ W R +A
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN---------PDWRYRDAAVMAFGC 392
Query: 1204 AADVLRTKDLPVIMTFLIS---RALADTNADVRGRMLNAGIMIIDKHGRDNVS-----LL 1255
+ L ++ + + D + VR I + ++ L
Sbjct: 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452
Query: 1256 FPIFENYLNKKASDEEK--------YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 1307
L+ + + E + +V KLL+
Sbjct: 453 LQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPT---LVSRLLDQLMK----------SDKYGE 1354
+ P SS LM+ +++ A V + +M+ +
Sbjct: 513 TTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTS 572
Query: 1355 RRGAAFGLAGVVKGFGISSLKKYG-----------IAATLREGLADRNSAKRREGALLAF 1403
R L ++ + L+K +A+ LR + S +E AL+A
Sbjct: 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAV 632
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQV-VAVREAAECA----ARAMMSQLSAQGVKL 1458
L E LG F Y+ P L + + V AA RA+ S +
Sbjct: 633 STLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDE 691
Query: 1459 VLPSLLKGLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
V+ LL+ L ++ K + + G +A + + L ++ L + K
Sbjct: 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSD 751
Query: 1517 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576
L ++ ++ GL ++ + ++ L+
Sbjct: 752 YDMVDYLNELRE-----SCLEAYTGIVQGLKGDQENVHPDVMLVQP------RVEFILSF 800
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPIP 1633
+ I + + AA ++G++C+ KD++ + ++ + +
Sbjct: 801 IDHIAGD--EDHTDGVVACAAGLIGDLCTAF--GKDVLKLVEARPMIHELLTEGRRSKTN 856
Query: 1634 EVRSVAARAIGSLIR 1648
+ +++A A L +
Sbjct: 857 KAKTLARWATKELRK 871
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 104/733 (14%), Positives = 231/733 (31%), Gaps = 111/733 (15%)
Query: 1889 TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGL- 1947
T++ S + A + L + L + +L+ A R + +
Sbjct: 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVA--RVAAGLQIK 62
Query: 1948 ------SEVMASAGKSQLLSFMDELIPTIRT----ALCDSILEVRESAGLAFSTLFKSAG 1997
+ + + + L+ ++ L ++
Sbjct: 63 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIP 122
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
+ E++P L+ + + +++ + + + + P L
Sbjct: 123 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-------------- 168
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDM--DVQSLAKEA----AETVTLVIDEEGVE 2111
IL A++ M ++ +V+ A A E D+E
Sbjct: 169 -------------KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER 215
Query: 2112 SLVSELLKGVGDNQASIRRSSAY-----LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166
+ +++ + R +A ++ +Y+ + Y+ + T+ + SD D
Sbjct: 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI--TIEAMKSDID 273
Query: 2167 STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKA 2226
+ E + D + + + + P F A
Sbjct: 274 EVALQGI-------------EFWSNVCDEEMDLAIEASEAAEQGRP--PEHTSKFYAKGA 318
Query: 2227 LQPLLPIFLQGLISGSAE-------LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
LQ L+PI Q L + A + L L + ++P P I+
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IVPHVLPFIKE 373
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIA-LKPFLPQLQTTFIKCLQDSTRTVRSSAALALG 2338
W+ + A + I+ + LKP + Q T I+ ++D + VR +AA +G
Sbjct: 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433
Query: 2339 KLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 2398
++ +LL ++D + + ++G+ A V+S V +S L +
Sbjct: 434 RIC-----------ELLPEAAINDVYLAPLLQCLIEGL--SAEPRVASNV-CWAFSSLAE 479
Query: 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR 2458
Y D +S E + L E + R + ++
Sbjct: 480 AAYEAADVADDQEEPATYCLSSSFE--LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537
Query: 2459 HNPSAIS--MSPLFLSILDRLKSSLK--------DEKFPLREASTKALGRLLLHQIQSGP 2508
++ + L I++RL+ L+ ++ + + L +
Sbjct: 538 NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH 597
Query: 2509 ANTTVVVDILASVVSALH---DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAEC 2565
+ + D++ + + + S V+ AL A+ ++ + + ++ F P L
Sbjct: 598 QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG 657
Query: 2566 LKDGSTP-VRLAA 2577
LK+ + V LAA
Sbjct: 658 LKNYAEYQVCLAA 670
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 46/255 (18%)
Query: 2325 STRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 2384
S + A+ G + D + LL ++ R + L +
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDDELFRLLDD---HNSLKRISSARVL-QLRGGQ---- 53
Query: 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM--SQCMEDGQLADLLQELLNLASSPS 2442
+ + + R A ILG + + ED L LN S
Sbjct: 54 ------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKS 104
Query: 2443 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502
R ++ A + NP I+++ + + D+ +R A+ A+ +
Sbjct: 105 ACVRATAIESTAQRCKKNPIYS------PKIVEQSQITAFDKSTNVRRATAFAISVI--- 155
Query: 2503 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 2562
N + +L ++ L D + +VR A A+ N
Sbjct: 156 -------NDKATIPLL---INLLKDPNGDVRNWAAFAININKYDNSDIR--------DCF 197
Query: 2563 AECLKDGSTPVRLAA 2577
E L+D + VR+ A
Sbjct: 198 VEMLQDKNEEVRIEA 212
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 8e-15
Identities = 44/336 (13%), Positives = 86/336 (25%), Gaps = 69/336 (20%)
Query: 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305
+ +A+ G K+ L R++ D + + L
Sbjct: 7 KRKASKEYGLY------NQCKKLNDD---ELFRLLDDHN-SLKRISSARVL------QLR 50
Query: 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV-SDAG 2364
+ + I+ D R A LG++ D + L + A
Sbjct: 51 GGQDAVRLA----IEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSAC 106
Query: 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424
+R + + K V+ + + +VR + A + + D
Sbjct: 107 VRATAIESTAQRCKKNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAIS----VIND 157
Query: 2425 GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE 2484
LL LL P+ R+ + N D L+D+
Sbjct: 158 KATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIR----------DCFVEMLQDK 204
Query: 2485 KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 2544
+R + L V+ +L L + V + A +
Sbjct: 205 NEEVRIEAIIGLSYR----------KDKRVLSVL---CDELKKN--TVYDDIIEAAGEL- 248
Query: 2545 KANPSAIMVHVALFGPALAECLKDGSTP-VRLAAER 2579
+ + + P L L + +A
Sbjct: 249 -GDKTLL--------PVLDTMLYKFDDNEIITSAID 275
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 44/306 (14%), Positives = 83/306 (27%), Gaps = 66/306 (21%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + L D N R ++ L ++ L + D N+ R
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARV---LQLRGGQDAVRLAIEFCSD----KNYIRRDIG 74
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+LG + + + +L M +D
Sbjct: 75 AFILGQI---------------------KICKKCEDNVFNIL-----------NNMALND 102
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
S VR A+ P +I+ + S+ R+ A+ +
Sbjct: 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQS----QITAFDKSTNVRRATAFAISVIND- 157
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
+ IP+L LKDP+ R ++ ++ L
Sbjct: 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ 202
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA 2035
D EVR A + S ++ L L+ + D ++ ++
Sbjct: 203 DKNEEVRIEAIIGLSYR-------KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLP 255
Query: 2036 VLPHIL 2041
VL +L
Sbjct: 256 VLDTML 261
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 55/310 (17%), Positives = 99/310 (31%), Gaps = 48/310 (15%)
Query: 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
+QC +L +L D + + + LQ G V + +D N
Sbjct: 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNY 68
Query: 1552 HTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
+ IL Q + +L + L ++SA + A + C
Sbjct: 69 IRRDIGAFILGQIKICKKCEDNVFNILN---NMALNDKSACVRATAIESTAQRCKKNPIY 125
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
++ + + D VR A AI + N + L++ LK N
Sbjct: 126 SP------KIVEQSQITAFDKSTNVRRATAFAISVI-------NDKATIPLLINLLKDPN 172
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
+V R+ AA ++ + I + + VR + L
Sbjct: 173 GDV-RNWAAFAIN--INKYDN---SDIRDCFVEMLQDKNEEVRIEAI-------IGLS-Y 218
Query: 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1790
++ ++VL + D L V D + A E T LP+L + D+
Sbjct: 219 RKD--KRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDNE 268
Query: 1791 IRQSSVELLG 1800
I S+++ L
Sbjct: 269 IITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 47/323 (14%), Positives = 99/323 (30%), Gaps = 53/323 (16%)
Query: 2095 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154
++A++ L + + EL + + D+ + R SSA ++ +
Sbjct: 8 RKASKEYGLYNQCK--KLNDDELFRLLDDHNSLKRISSARVLQLR----------GGQDA 55
Query: 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGG 2214
+ I SD + L ++ + K+ + + ++ + + R
Sbjct: 56 VRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNILNNMALNDKSACVRATAIE 113
Query: 2215 PILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG 2274
P ++ S +R A + + + IP
Sbjct: 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI--------NDKATIP--- 162
Query: 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAA 2334
LI ++ D V++ ++ I + ++ ++ LQD VR A
Sbjct: 163 LLINLLKDP-NGDVRNWAAFAIN-INKYDNSDIRDCF-------VEMLQDKNEEVRIEAI 213
Query: 2335 LALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYS 2394
+ L + L +L + + I+ A G L +
Sbjct: 214 IGLSYRKDKRV-LSVLCDEL------KKNTVYDDIIEAA-GELGDK----------TLLP 255
Query: 2395 VLKDLVYHDDD-HVRVSAASILG 2416
VL ++Y DD + SA L
Sbjct: 256 VLDTMLYKFDDNEIITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 44/293 (15%)
Query: 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
L L +S +R + R L G + + D + RR L +
Sbjct: 28 LFRLLDDHNSLKRISSARVLQLR----GG---QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80
Query: 1950 VMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLL 2009
+ + AL D VR +A + + K + + +IV
Sbjct: 81 IKICKKCEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-PKIVEQSQ 134
Query: 2010 HALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 2067
D T+ + I T +L ++L K + + + A A+ + +
Sbjct: 135 ITAFDKSTNVRRATAFAISVINDKATIPLLINLL-KDPNGDVRNWAAFAIN-INKYDNS- 191
Query: 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
I + + D + +V+ EA ++ D+ + L EL + +
Sbjct: 192 ------DIRDCFVEMLQDKNEEVR---IEAIIGLSYRKDKRVLSVLCDEL------KKNT 236
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV-AAAWEALSR 2179
+ G ++ L +L D + +A + L R
Sbjct: 237 VYDDIIEAAGEL----------GDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 37/284 (13%), Positives = 82/284 (28%), Gaps = 66/284 (23%)
Query: 1897 SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956
S++ +++ A + G L + L R L D ++ +R L
Sbjct: 2 SNTYQKRKASKEYG-----LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG---- 52
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016
+ + D R+ + + D + L + +D+
Sbjct: 53 -------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE--DNVFNILNNMALNDK 103
Query: 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076
++ VR TA + + + I+
Sbjct: 104 SAC-----------VRATA------------------IESTAQRCKKNP----IYSPKIV 130
Query: 2077 PALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 2136
D +V+ + A ++++ D+ + L+ LLK D +R +A+ I
Sbjct: 131 EQSQITAFDKSTNVR---RATAFAISVINDKATIPLLI-NLLK---DPNGDVRNWAAFAI 183
Query: 2137 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRV 2180
++ ++ + +L D + A LS
Sbjct: 184 NINKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 67/335 (20%)
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
SN + A++ + L L D L R
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDD-ELFRLLD-------------DHNSLKR------- 40
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA--GIMIIDKHGRDNVSLLFPIF 1259
S+A VL+ + + I +D N R I I K + ++L +
Sbjct: 41 ISSARVLQLRGGQDAVRLAI-EFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99
Query: 1260 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRA 1319
N D+ VR + + A+ K+ +V++ S V+RA
Sbjct: 100 LN-------DKSAC--VRATAI---ESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRA 147
Query: 1320 VSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ +S + + L+ L+K R AAF + I+ I
Sbjct: 148 TAFAISVI------NDKATIPLLI-NLLKDPNGDVRNWAAFAI-------NINKYDNSDI 193
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
E L D+N R E A++ L + ++L +L V
Sbjct: 194 RDCFVEMLQDKNEEVRIE-AIIG-------LSYRKDK---RVLSVLCDELKKNTVYDD-- 240
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
A +L + + VL ++L +D T
Sbjct: 241 ---IIEAAG-ELGDKTLLPVLDTMLYKFDDNEIIT 271
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 40/287 (13%), Positives = 84/287 (29%), Gaps = 53/287 (18%)
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 2115
+ L G + + D + + A + + + E V
Sbjct: 43 SARVLQLRGGQ-------DAVRLAIEFCSDKNYIRRD---IGAFILGQIKICKKCEDNVF 92
Query: 2116 ELLKGV--GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+L + D A +R ++ K + +Y +P ++ + D + A
Sbjct: 93 NILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRAT 148
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 2233
A+S + + I ++ + + + + R I I + +
Sbjct: 149 AFAISVIND-------KATIPLLINLLK-DPNGDVRNWAAFAININKYDNSDIRDCFV-- 198
Query: 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAIL 2293
+ L + E+R +A +GL ++ L L + V I+
Sbjct: 199 --EMLQDKNEEVRIEAIIGLSYR---KDKRVLS--------VLCDELKKN---TVYDDII 242
Query: 2294 STLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGK 2339
G + K LP L L + +SA L +
Sbjct: 243 EAA------GELGDKTLLPVLD----TMLYKFDDNEIITSAIDKLKR 279
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 2e-15
Identities = 82/551 (14%), Positives = 157/551 (28%), Gaps = 97/551 (17%)
Query: 2076 LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V L+K+ A ++ + V ++V + N
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVE 72
Query: 2128 IRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
R +A + + L + I L+ +L + + A L ++
Sbjct: 73 TARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-- 128
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245
Q +R A GG L + L + +
Sbjct: 129 ---QEGAKMAVRLA-------------GG----------------LQKMVALLNKTNVKF 156
Query: 2246 REQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR- 2301
L L E L L+ I+ ++ L ++
Sbjct: 157 LAITTDCLQILAYGNQESKLIILASGGPQ---ALVNIMRTYTYEKLLWTTSRVLKVLSVC 213
Query: 2302 ---KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV---DPLVGDLL 2355
K I + L L D ++ + + L LS +T+ + L+G L+
Sbjct: 214 SSNKPAIVEAGGMQAL----GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 269
Query: 2356 SSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY--HDDDHVRVSAAS 2413
L D + L + + K+ ++ L V D + + A
Sbjct: 270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329
Query: 2414 ILGIMSQCMEDGQL-------ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 2466
L ++ ++ ++ L ++ L PS + + L P+ +
Sbjct: 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 389
Query: 2467 ------SPLFLSILDR------------LKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508
P + +L R E + E G LH +
Sbjct: 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG--ALHILARDV 447
Query: 2509 ANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECL 2566
N V+ + V L+ ++R A L +A+ +A + L E L
Sbjct: 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 507
Query: 2567 KDGSTPVRLAA 2577
+ V A
Sbjct: 508 HSRNEGVATYA 518
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 6e-08
Identities = 68/540 (12%), Positives = 160/540 (29%), Gaps = 82/540 (15%)
Query: 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ----AIDEIVPTLLHALEDDQTSDT-- 2020
IP + L D V A + L K + ++V ++ +++ +T
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 2021 ----ALDGLKQILSVRTTAVLPHILPKLVHL---PLSAFNAHALGALAEVAGPGLNFHLG 2073
L L +P LV + P+ + +A+ L + +
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 2074 TI----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGV 2121
L +++ + ++ LA E+ +++ G ++LV +++
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRT- 193
Query: 2122 GDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ +++ ++ ++K +V+ + L + L+D V L
Sbjct: 194 -YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLRN 250
Query: 2180 VVASVPKEVQPS-YIKVIRDAISTSRDKERRK--------KKGGPILIPGFCLPKALQPL 2230
+ + K+ + + + + C ++ L
Sbjct: 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310
Query: 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRIIGDRFPWQ 2287
+ L+ ++ E A L L E + + + + +++++ W
Sbjct: 311 VRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368
Query: 2288 VKSAILSTLSI----------IIRKGGIALKPFLPQLQTT---------------FIKCL 2322
+ A + + + +G I P L QL
Sbjct: 369 LIKATVGLIRNLALCPANHAPLREQGAI---PRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425
Query: 2323 QDSTRTVRSSAALALGKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGV 2376
+ AL L A ++ + L I+ L
Sbjct: 426 GVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL-CE 483
Query: 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLN 2436
L ++ + + L +L++ ++ V AA++L MS+ L EL +
Sbjct: 484 LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-05
Identities = 65/464 (14%), Positives = 130/464 (28%), Gaps = 84/464 (18%)
Query: 1284 TGALAKHLAKDDPKVHAV-----VDKLLDVLNTPSEAVQRAVSSCLS------------- 1325
L L + AV + K++ +LN + + CL
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 1326 -------PLMQ--------SMQDEAPTLVSRL------------------LDQLMKSDKY 1352
L+ + ++ L L +
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238
Query: 1353 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC----E 1408
+ + L + G+ TL + L + A L +
Sbjct: 239 RLVQNCLWTLRNLSDA-ATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYK 296
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPS 1462
+ + I+ L ++ D+ A +R ++++ V+L LP
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356
Query: 1463 LLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
++K L W +++V L+ +A C +P+L ++L H Q
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 1522 ALQQVGSV--IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579
Q V ++ EI L L + H + + ++ L V
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVI-----------RGLNTIPLFVQ 464
Query: 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639
+ L ++ AA ++ + E + I G + ++L V + A
Sbjct: 465 L----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYA 518
Query: 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683
A + + ++ L L +L A GL
Sbjct: 519 AAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLD 562
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 9e-05
Identities = 72/547 (13%), Positives = 162/547 (29%), Gaps = 101/547 (18%)
Query: 1886 LMNTLISSLASSSS-ERRQVAGRALGEL---------VRKLGERVLPSIIPILSRGLKDP 1935
+++ ++ ++ +++ E + L L + K G IP L + L P
Sbjct: 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG------GIPALVKMLGSP 110
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL-FK 1994
S L ++ +++ + + + L + ++ L +
Sbjct: 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170
Query: 1995 SAGMQAI---DEIVPTLLHALEDDQTSD------TALDGLKQILSVRTTAVLPHILPKLV 2045
+ + I L++ + L L S + V + L
Sbjct: 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 230
Query: 2046 HLPLSAFN----AHALGALAEVA-GPGLNFHLGTILPALLSAMGDDDMDVQ--------S 2092
L+ + + L L ++ + +L L+ +G DD++V +
Sbjct: 231 LH-LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 2093 LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF----YKNSKLYLV 2148
L + +V G+E+LV +L+ ++ I + + + +
Sbjct: 290 LTCNNYKNKMMVCQVGGIEALVRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNA 347
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA--------I 2200
+ ++ LL + A L R +A P+ +R+ +
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-----CPANHAPLREQGAIPRLVQL 402
Query: 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT 2260
++ +++ F ++ E+ E L L
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRME---------------EIVEGCTGALHILARDV 447
Query: 2261 SEQSL--KEFVIPITGPLIRIIGDRFPWQVKSA--ILSTLS-------IIIRKGGIALKP 2309
+ + IP ++++ + A +L L+ I +G A
Sbjct: 448 HNRIVIRGLNTIP---LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP-- 502
Query: 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA--LSTRVDPLVGDLLSSLQVSD-AGIR 2366
+ L V + AA L ++S L +L SSL ++
Sbjct: 503 --------LTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWN 554
Query: 2367 EAILTAL 2373
E L
Sbjct: 555 ETADLGL 561
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 3e-15
Identities = 94/622 (15%), Positives = 180/622 (28%), Gaps = 107/622 (17%)
Query: 2014 DDQTSDTALDGLKQILSVRTT---AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 2070
D Q + T ++ + T +P H A L +N+
Sbjct: 82 DGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINY 141
Query: 2071 HLGTI-----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSEL 2117
+P L + D+D V L+K+ A ++ + V ++V +
Sbjct: 142 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 201
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
N R ++ + + L + I L+ +L + + A
Sbjct: 202 QNT---NDVETARCTSGTLHNLSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAIT 256
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235
L ++ Q +R A GG L +
Sbjct: 257 TLHNLLLH-----QEGAKMAVRLA-------------GG----------------LQKMV 282
Query: 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK---SAI 2292
L + + L L E L L+ I+ ++ S +
Sbjct: 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342
Query: 2293 LSTLSI-------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345
L LS+ I+ GG+ L L D ++ + + L LS +T
Sbjct: 343 LKVLSVCSSNKPAIVEAGGM---QALGLH-------LTDPSQRLVQNCLWTLRNLSDAAT 392
Query: 2346 RV---DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY- 2401
+ + L+G L+ L D + L + + K+ ++ L V
Sbjct: 393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452
Query: 2402 -HDDDHVRVSAASILGIMSQCMEDGQLA-------DLLQELLNLASSPSWAARHGSVLVF 2453
D + + A L ++ +D ++A L ++ L PS + +
Sbjct: 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512
Query: 2454 ATFLRHNPSAISM------SPLFLSILDR----------LKSSLKDEKFPLREASTKALG 2497
L P+ + P + +L R + + + +R
Sbjct: 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572
Query: 2498 RLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 2555
LH + N V+ + V L+ ++R A L +A+ +A +
Sbjct: 573 TGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 632
Query: 2556 ALFGPALAECLKDGSTPVRLAA 2577
L E L + V A
Sbjct: 633 EGATAPLTELLHSRNEGVATYA 654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 5e-09
Identities = 42/287 (14%), Positives = 96/287 (33%), Gaps = 43/287 (14%)
Query: 2318 FIKCLQDSTRTVRSSAALALGKLSALSTR----------VDPLVGDLLSSLQVSDAGIRE 2367
K L D + V + AA+ + +LS V +V + ++ +D
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETAR 211
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYS-----VLKDLVYHDDDHVRVSAASILGIMSQCM 2422
L + S + ++ L +++ D V A + L +
Sbjct: 212 CTSGTLHNL------SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265
Query: 2423 EDGQL----ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS---AISMSPLFLSILD 2475
E ++ A LQ+++ L + + + N I S ++++
Sbjct: 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 325
Query: 2476 RLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVR 2533
+++ ++ L +++ L L + +N +V+ + ++ L D S +
Sbjct: 326 IMRTYTYEK---LLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 2534 RRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 2580
+ L L++++ A + L L + L V A
Sbjct: 378 QNCLWTLRNLSDAATKQEGMEGLL--GTLVQLLGSDDINVVTCAAGI 422
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 1e-07
Identities = 89/601 (14%), Positives = 178/601 (29%), Gaps = 124/601 (20%)
Query: 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI----DEIVPTLLHALEDDQTSDT-- 2020
IP + L D V A + L K + ++V ++ +++ +T
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 2021 ----ALDGLKQILSVRTTAVLPHILPKLVHL---PLSAFNAHALGALAEVAGPGLNFHLG 2073
L L +P LV++ P+ + HA+ L + +
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271
Query: 2074 TI----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGV 2121
L +++ + ++ LA E+ +++ G ++LV +++
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRT- 329
Query: 2122 GDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ +++ ++ ++K +V+ + L + L+D V L
Sbjct: 330 -YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLRN 386
Query: 2180 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 2239
+ + K+ ++ LL +Q L
Sbjct: 387 LSDAATKQE-------------------------------------GMEGLLGTLVQLLG 409
Query: 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITG--PLIRIIGDRFP-WQVKSAILSTL 2296
S + AA L L + K V + G L+R + + + L
Sbjct: 410 SDDINVVTCAAGILSNL--TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467
Query: 2297 SIIIRKGG--------IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR-- 2346
+ + + L LP + +K L + A + L + AL
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGLPVV----VKLLHPPSHWPLIKATVGLIRNLALCPANH 523
Query: 2347 --------VDPLVGDLLSS---------------LQVSDAGIREAILTALKGVLKHAGKS 2383
+ LV LL Q + E I+ A G L +
Sbjct: 524 APLREQGAIPRLV-QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582
Query: 2384 VSSAVKIR---VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL---ADLLQELLNL 2437
+ + + IR + L+Y ++++ AA +L ++Q E + L L
Sbjct: 583 IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 642
Query: 2438 ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL-KDEKFPLREASTKAL 2496
S + + V P + L SSL + E E L
Sbjct: 643 LHSRNEGVATYAAAVLFRMSEDKPQDYKK-----RLSVELTSSLFRTEPMTWNETGDLGL 697
Query: 2497 G 2497
Sbjct: 698 D 698
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 7e-04
Identities = 65/462 (14%), Positives = 138/462 (29%), Gaps = 82/462 (17%)
Query: 1284 TGALAKHLAKDDPK------VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
L +L + + K++ +LN + + CL L Q+
Sbjct: 255 ITTLH-NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313
Query: 1338 LVS----RLLDQLMKSDKYGERRGAAFGL----------------AGVVK---------- 1367
+++ + L +M++ Y + + AG ++
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 373
Query: 1368 -------GFGISSLKKYGIAATLREG-------LADRNSAKRREGALLAFECLC----EK 1409
+ + +L EG L + A L +
Sbjct: 374 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPSL 1463
+ + I+ L ++ D+ A +R ++++ V+L LP +
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493
Query: 1464 LKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ--SAGQ 1520
+K L W +++V L+ +A C +P+L ++L H Q ++
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553
Query: 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580
QQ ++ EI L L + H + + ++ L V +
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVI-----------RGLNTIPLFVQL 601
Query: 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640
L ++ AA ++ + E + I G + ++L V + AA
Sbjct: 602 ----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYAA 655
Query: 1641 RAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
+ + ++ L L +L GL
Sbjct: 656 AVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 9e-15
Identities = 80/553 (14%), Positives = 155/553 (28%), Gaps = 101/553 (18%)
Query: 2076 LPALLSAMGDDDMDVQS--------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V + L+K+ A ++ + V ++V + N
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVE 75
Query: 2128 IRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
R +A + + L + I L+ +L + + A L ++
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-- 131
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245
Q +R A GG L + L + +
Sbjct: 132 ---QEGAKMAVRLA-------------GG----------------LQKMVALLNKTNVKF 159
Query: 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR---- 2301
L L E L L+ I+ ++ L ++
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219
Query: 2302 KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR---VDPLVGDLLSSL 2358
K I + L L D ++ + + L LS +T+ ++ L+G L+ L
Sbjct: 220 KPAIVEAGGMQAL----GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 275
Query: 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH--VRVSAASILG 2416
D + L + + K+ ++ L V D + A L
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335
Query: 2417 IMSQCMEDGQL-------ADLLQELLNLASSPS--------WAA---------------R 2446
++ ++ ++ L ++ L PS
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 2447 HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS 2506
G++ L + ++ E+ + E T AL L
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE--IVEGCTGALHILARD---- 449
Query: 2507 GPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAE 2564
N V+ + V L+ ++R A L +A+ +A + L E
Sbjct: 450 -VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE 508
Query: 2565 CLKDGSTPVRLAA 2577
L + V A
Sbjct: 509 LLHSRNEGVATYA 521
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 5e-14
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 12/210 (5%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATL 1383
+ +Q L + + + A L + +S+ TL
Sbjct: 35 HISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL 94
Query: 1384 REGLADRNSAKRREGALL---AFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
R + N A + L E + + + + V +P LL+ + +R +
Sbjct: 95 R--FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+ + + P LL L+ K R + + ++ A + +
Sbjct: 153 RDIVNVLSDVVGPL---KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK-SLSV 208
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ + D V++A L
Sbjct: 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFE 238
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 33/221 (14%), Positives = 81/221 (36%), Gaps = 14/221 (6%)
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504
+SQL SL+ L K ++ +++ L +A +P+ L ++
Sbjct: 33 DEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWC 92
Query: 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKN-------PEIASLVPTLLMGLTDPNDHTKYSL 1557
T +T+P + + +I++ E+++ VP LL+ + D+ + S+
Sbjct: 93 TLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
+ D + P++ L+ ++A + + ++ +T
Sbjct: 153 ----RDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY---ITNAGISPLKS 205
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658
+ V + D VR+ A + + + G++ +
Sbjct: 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 5e-06
Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+ + + + Q + +P +L + +++R + +VL + + P
Sbjct: 114 IVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTP 170
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLL 1803
+ D + + N R R + ++ +
Sbjct: 171 MLLDALKSKNARQRSECLLVIEYYI 195
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 9e-05
Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 15/191 (7%)
Query: 1989 FSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPHILPKLVHL 2047
F FK + A+D L+ + S + D L + ++R P L K++
Sbjct: 56 FHKDFKQ-HLAALDS----LVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE- 109
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107
+ + + P + +P LL G+ ++++ ++ ++ V+
Sbjct: 110 ----LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-- 163
Query: 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS 2167
G + LL + A R +I Y+ N+ + + + T+ + D D
Sbjct: 164 -GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPFVGDKDV 221
Query: 2168 TTVAAAWEALS 2178
AA L
Sbjct: 222 NVRNAAINVLV 232
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 8/206 (3%)
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
D H ++ + LL+ E + K ++ + L
Sbjct: 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVEL 117
Query: 1607 VTEPKDMI--PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664
+ + + + + +P + + +R+ + L +G + LLD
Sbjct: 118 IRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLD 174
Query: 1665 ALKSDNSNVERSGAAQGLSEVLAALGT--VYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
ALKS N+ RS + + G + + + + +VR+ + +
Sbjct: 175 ALKSKNARQ-RSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLAD 1748
+ G Q ++ + +
Sbjct: 234 CFKFEGDQMWKAAGRMADKDKSLVEE 259
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 3e-04
Identities = 34/246 (13%), Positives = 77/246 (31%), Gaps = 25/246 (10%)
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSP 1326
+DE L +L L D K H A +D L+ + +T ++ L
Sbjct: 32 TDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKW 91
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA--TLR 1384
+ P + ++L+ + +++ ++ A L
Sbjct: 92 CTLRFFETNPAALIKVLELCK-------------VIVELIRDTETPMSQEEVSAFVPYLL 138
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444
+ R L + +G ++M P+LL A + R
Sbjct: 139 LKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVI 191
Query: 1445 RAMMSQ--LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
++ +S V ++ + DK + +++ +L A Q+ + ++
Sbjct: 192 EYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMAD 251
Query: 1503 KLTEVL 1508
K ++
Sbjct: 252 KDKSLV 257
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 1e-13
Identities = 63/385 (16%), Positives = 143/385 (37%), Gaps = 37/385 (9%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRA 1710
++ +++L L ++ S A+Q ++ + A + + ++P ++ N ++ +
Sbjct: 85 ANARREVKNYVLQTLGTETYR--PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS 142
Query: 1711 SV--RDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENES--VRDAALGAGHVLV 1765
+ ++ L Y+ + + Q Q+ ++L AI+ G+ E S V+ AA A +
Sbjct: 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202
Query: 1766 EHYATTSL-----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--------VAGTSGK 1812
E ++ V + + R+R ++++ L ++ +
Sbjct: 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262
Query: 1813 ALLEG-GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+E SD + + + IE E+ A+ + +
Sbjct: 263 ITIEAMKSDIDEVALQG-----IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK----- 312
Query: 1872 VANTPKTLKEIMPVLMNTLISSL---ASSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1928
L+ ++P+L TL + AG L L + ++P ++P +
Sbjct: 313 -FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
+K+P R + ++ SQL + + +PT+ + D + VR++A
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 1989 FSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + AI D + LL L
Sbjct: 432 VGRICELLPEAAINDVYLAPLLQCL 456
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 5e-12
Identities = 69/475 (14%), Positives = 147/475 (30%), Gaps = 38/475 (8%)
Query: 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRS 2131
L TIL +S D A++ E + + L L N R +
Sbjct: 3 LITILEKTVSP----DRLELEAAQKFLERAAVENLPTFLVELSRVLANP--GNSQVARVA 56
Query: 2132 SAYLI------------GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179
+ I + + + + + ++ L +A+
Sbjct: 57 AGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 116
Query: 2180 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL------IPGFCLPKALQPLLPI 2233
A +P P I + ++ E K+ + I L +L
Sbjct: 117 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176
Query: 2234 FLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291
+QG+ S ++ A L +E T KE ++ +V+ A
Sbjct: 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236
Query: 2292 ILSTLSIIIRKGGIALKPFLPQ-LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL 2350
L L I+ ++ ++ L I+ ++ V + +
Sbjct: 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296
Query: 2351 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 2410
+ + + + AL+ ++ + + + + DD + +
Sbjct: 297 ASEAAEQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDDDWNPCKA 347
Query: 2411 AASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLF 2470
A L +++ C ED + +L + +P W R +V+ F L P + PL
Sbjct: 348 AGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKPLV 406
Query: 2471 LSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL 2525
+ + L +KD +R+ + +GR + + N + +L ++ L
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGR-ICELLPEAAINDVYLAPLLQCLIEGL 460
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-07
Identities = 79/457 (17%), Positives = 140/457 (30%), Gaps = 74/457 (16%)
Query: 1958 QLLSFMDELIPTIRTALCDSI------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011
L E +PT L + R +AGL S + L
Sbjct: 24 FLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83
Query: 2012 LEDDQTS--DTALDGLKQILSVRTTAVL---------------PHILPKLVHLPLS---- 2050
+ + + L L ++A P ++P+LV +
Sbjct: 84 DANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST 143
Query: 2051 -AFNAHALGALA----EVAGPGLNFHLGTILPALLSAMGDDDM--DVQSLAKEA----AE 2099
L A+ ++ L IL A++ M ++ +V+ A A E
Sbjct: 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAY--LIGYFYKNSKLYLVDEAPNMIST 2157
D+E + +++ + R +A L+ + P + +
Sbjct: 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
I + E S V + AI S E+ + P
Sbjct: 264 TIEAMKSDIDEVALQGIEFWSNVCDEE-----------MDLAIEASEAAEQGRP---PEH 309
Query: 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQ-------AALGLGELIEVTSEQSLKEFVI 2270
F ALQ L+PI Q L + A + L L + ++
Sbjct: 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IV 364
Query: 2271 PITGPLI-RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329
P P I I + +A+++ I+ LKP + Q T I+ ++D + V
Sbjct: 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424
Query: 2330 RSSAALALGKLSAL-------STRVDPLVGDLLSSLQ 2359
R +AA +G++ L + PL+ L+ L
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 7e-07
Identities = 55/452 (12%), Positives = 126/452 (27%), Gaps = 95/452 (21%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLK------------EIMPVLMNTLISSLASSS 1898
+ S R AA K + + +K + N ++ +L + +
Sbjct: 44 LANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET 103
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS--RRQGVCIGLSEVMASAGK 1956
+ G ++ P +IP L + +P+++ ++ + +
Sbjct: 104 YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163
Query: 1957 SQLLSFMDELIPTIRTALCDS--ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL-- 2012
QL +E++ I + V+ +A A + E + +
Sbjct: 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223
Query: 2013 -----EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH-------ALGAL 2060
D + AL L +I+S+ + ++ P L + + A + +
Sbjct: 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283
Query: 2061 AEVAGPGL------------------------NFHLGTILPALLSAMGDDDMD------- 2089
+ V + L ++P L + D +
Sbjct: 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343
Query: 2090 VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN-SKLYLV 2148
A + +++ V ++ + + + + R ++ G + L
Sbjct: 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208
+ TLI L+ D A + R+ +P+
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN------------------ 445
Query: 2209 RKKKGGPILIPGFCLPKALQPLLPIFLQGLIS 2240
L PLL ++GL +
Sbjct: 446 ---------------DVYLAPLLQCLIEGLSA 462
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 60/490 (12%), Positives = 145/490 (29%), Gaps = 81/490 (16%)
Query: 1305 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364
+L+ +P A L ++ + PT + L L R AA
Sbjct: 6 ILEKTVSPDRLELEAAQKFLE---RAAVENLPTFLVELSRVLANPGNSQVARVAA----- 57
Query: 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 1424
++ L ++ + + ++ + ++
Sbjct: 58 ---------------GLQIKNSLTSKDPDIKAQYQ--------QRWLAIDANARREVKNY 94
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L + A++C A +++ ++P L+ + + K+S+++ +
Sbjct: 95 VLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154
Query: 1483 G-AMAYCAPQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIK-NPEIASL 1538
G P+QL +I+ + + + P V+ A AL K N + S
Sbjct: 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD------APSLALLV-PIVHRGLRERSAE 1591
++ + + + + V + + + I ++ E
Sbjct: 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIP---------------YIGLLLPEVKKVLVDPIPE-- 1634
+ + N+C + Y L + +L + +
Sbjct: 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334
Query: 1635 ---------VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
A + L ++ P ++ ++ + +K+ + R A +
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCI 393
Query: 1686 LAALGTVYFEH----ILPDIIRNCSHQRASVRDGYL----TLFKYLPRSLGVQFQNYLQQ 1737
L + +P +I VRD + + LP + YL
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA--AINDVYLAP 451
Query: 1738 VLPAILDGLA 1747
+L +++GL+
Sbjct: 452 LLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 43/322 (13%), Positives = 101/322 (31%), Gaps = 45/322 (13%)
Query: 1391 NSAKRREGALLAFECLCEKL-GRLFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 1447
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 1448 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 1503 KLTEVLTDT--------------------HPKVQSAGQTALQQVGSVIKNPEIAS----- 1537
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 1538 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ A G + P + P + +P + +++ DP VR AA +G + +
Sbjct: 382 YRDAAVMAFGCILEGPE-PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 1652 E-----ENFPDLVSWLLDALKS 1668
E L+ L++ L +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLSA 462
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 9e-04
Identities = 55/354 (15%), Positives = 128/354 (36%), Gaps = 45/354 (12%)
Query: 1135 LFKALSHSN--YNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 1191
L +++ N +++ + EA+ + P+ +Q + + + I+ + + +
Sbjct: 133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV-- 190
Query: 1192 LGRQGIALALHSAADVLRT-KDLPVIMTFL---ISRALADTNADVRGRMLNAGIMIIDKH 1247
+ AL ++ + + D F+ + A + VR L + I+ +
Sbjct: 191 --KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248
Query: 1248 GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 1307
+ + + P + A + ++ +G+ ++ V D+ +D
Sbjct: 249 YQYMETYMGPALFAITIE-AMKSDIDEVALQGIEFWS---------------NVCDEEMD 292
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE------RRGAAFG 1361
+ SEA ++ + + LV L L K D+ + + A
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQ 1420
L + + + ++E + + + R+ A++AF C+ E +P VIQ
Sbjct: 352 LMLLATCCEDDIVPH--VLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408
Query: 1421 MLPLLLVAFSDQVVAVREAAECAARAMMS------QLSAQGVKLVLPSLLKGLE 1468
+P L+ D V VR+ A + ++ + +L L++GL
Sbjct: 409 AMPTLIELMKDPSVVVRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 76.1 bits (186), Expect = 1e-13
Identities = 46/282 (16%), Positives = 86/282 (30%), Gaps = 35/282 (12%)
Query: 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAI 2369
F P + + L R + A L L V + S + + E
Sbjct: 59 FTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQF 118
Query: 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---Q 2426
A +R + L+ + + + A S I +++
Sbjct: 119 NVQ-------APSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIEN 171
Query: 2427 LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILD-RLKSSLKDEK 2485
+ D +++ + S W RHG+ L FA + + S L ++ L +K
Sbjct: 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDK 231
Query: 2486 F----------PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRR 2535
F P+R+A+ L R+ + DI+ +V L +V+
Sbjct: 232 FNDFVDDRTVAPVRDAAAYLLSRIYPLIGPN---------DIIEQLVGFLDSGDWQVQFS 282
Query: 2536 ALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
L AL + + L L ++L +
Sbjct: 283 GLIALGYLK-----EFVEDKDGLCRKLVSLLSSPDEDIKLLS 319
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 1e-05
Identities = 64/436 (14%), Positives = 125/436 (28%), Gaps = 69/436 (15%)
Query: 2093 LAKEAAETVTLVIDEEGVES--LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL--- 2147
L + + I E + ++ + + + + RR+ A ++ KL
Sbjct: 41 LKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFK 100
Query: 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207
++ + L + + + + + V+ +++ I + +
Sbjct: 101 IEYKESSSIYLSSTGEQFNVQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIK 160
Query: 2208 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 2267
R K PI + + L+S R A L + +
Sbjct: 161 RHKVDERPI--------ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ 212
Query: 2268 FVIP--ITGPLIRIIG-DRF----------PWQVKSAILSTLSIIIRKGGIALKPFLPQL 2314
+ + + I+ D+F P V+ A LS I I + QL
Sbjct: 213 IRVDSKLFSKIYEILVTDKFNDFVDDRTVAP--VRDAAAYLLSRIYPL--IGPNDIIEQL 268
Query: 2315 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALK 2374
L V+ S +ALG L D L L+S L D I+ L
Sbjct: 269 VGF----LDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLC 324
Query: 2375 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434
+ V + ++ + VS S L ++++ + + E
Sbjct: 325 HFP-------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENPELSIPPER 376
Query: 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS----------LKDE 2484
L + S L+++ L L +E
Sbjct: 377 LK---------------DIFPCFTSPVPEVRTS--ILNMVKNLSEESIDFLVAEVVLIEE 419
Query: 2485 KFPLREASTKALGRLL 2500
K +RE + K L +
Sbjct: 420 KDEIREMAIKLLKKRR 435
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 9e-05
Identities = 56/458 (12%), Positives = 127/458 (27%), Gaps = 89/458 (19%)
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTK 1554
P I+ + +L + + G L+ + K + + L+ +
Sbjct: 60 TPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQFN 119
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
+ + + A + + + + K ++ V +
Sbjct: 120 VQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIENVLD----- 174
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKS 1668
++ L+ R A A ++ + L S + + L +
Sbjct: 175 -----FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVT 229
Query: 1669 DNSN----------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 1718
D N V R AA LS + +G I+ ++ V+ L
Sbjct: 230 DKFNDFVDDRTVAPV-RDAAAYLLSRIYPLIGP---NDIIEQLVGFLDSGDWQVQFSGLI 285
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
YL +F + ++ L+ +E ++ + L T SL L+L
Sbjct: 286 ALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL---LCHFPITDSLDLVLE 337
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
W + + + S ++ + ++
Sbjct: 338 KC--------W-------KNIESE-----------------ELISVSKTSNLSLLTKIYR 365
Query: 1839 RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS- 1893
+ E L ++ + VR + L +K + ++ L++
Sbjct: 366 ENPELSIPPERLKDIFPCFTSPVPEVRTSIL-----------NMVKNLSEESIDFLVAEV 414
Query: 1894 -LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930
L E R++A + L + +L + I
Sbjct: 415 VLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGGS 452
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 9e-04
Identities = 39/250 (15%), Positives = 76/250 (30%), Gaps = 37/250 (14%)
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-----MQAIDEIVPT-LLH 2010
+L F +++ L R A LAF+ +F +D + + +
Sbjct: 170 ENVLDFFEQIS----DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYE 225
Query: 2011 ALEDDQTSDTALDGLKQILSVRTTA------VLPHILPKLVHLPLSAFNAH--------- 2055
L D+ +D D + VR A + P I P + L F
Sbjct: 226 ILVTDKFNDFVDDRT--VAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSG 283
Query: 2056 --ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
ALG L E + L+S + D D++ L+ E + + V
Sbjct: 284 LIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEK 338
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ ++ S S+ L+ Y+ + + P + + + +
Sbjct: 339 CWKNIESEELISVSK-TSNLSLLTKIYRENPELSIP--PERLKDIFPCFTSPVPEVRTSI 395
Query: 2174 WEALSRVVAS 2183
+ +
Sbjct: 396 LNMVKNLSEE 405
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 48/230 (20%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
IK LQD + VR +AA ALGK+ + V L+ +L+ DA +R A AL G +
Sbjct: 25 IKNLQDDSYYVRRAAAYALGKI-----GDERAVEPLIKALKDEDAWVRRAAADAL-GQIG 78
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
R L + +D VR SAA LG + D + + L + L
Sbjct: 79 DE----------RAVEPLIKALKDEDGWVRQSAAVALG----QIGDERAVEPLIKALK-- 122
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 2498
W R + + A+ + L +LKDE +R+++ ALG
Sbjct: 123 -DEDWFVRIAAAFALGEI--GDERAV----------EPLIKALKDEDGWVRQSAADALGE 169
Query: 2499 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548
+ G + A++ + R+ A++ L++ N
Sbjct: 170 I------GGER-------VRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 48/239 (20%), Positives = 78/239 (32%), Gaps = 54/239 (22%)
Query: 2342 ALSTRVDP-LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400
A R DP V + +LQ +R A AL G + R L +
Sbjct: 11 AAPLRADPEKVEMYIKNLQDDSYYVRRAAAYAL-GKIGDE----------RAVEPLIKAL 59
Query: 2401 YHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHN 2460
+D VR +AA LG + ++ L+ R + + +
Sbjct: 60 KDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWVRQSAAVALGQI--GD 110
Query: 2461 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILAS 2520
A+ + L +LKDE + +R A+ ALG + V+ L
Sbjct: 111 ERAV----------EPLIKALKDEDWFVRIAAAFALGEI----------GDERAVEPL-- 148
Query: 2521 VVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
+ AL D+ VR+ A AL + A+ + + G+ R A
Sbjct: 149 -IKALKDEDGWVRQSAADALGEIG--GERVR--------AAMEKLAETGTGFARKVAVN 196
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 54/232 (23%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + + + D VR AA L G + + L+K L+D+ ++++
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKDEDAWVRRAAA 71
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539
LG + + V L + L D V+ + AL Q+G V
Sbjct: 72 DALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAV 114
Query: 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKK 1594
L+ L D + + + A +L + V + + L++ ++
Sbjct: 115 EPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKALKDEDGWVRQ 161
Query: 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
AA +G + ++K+ R VA + +
Sbjct: 162 SAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 46/213 (21%)
Query: 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
P+ ++ + + L S +R AA LG++ E++++ PLI+ + D
Sbjct: 18 PEKVEMYI----KNLQDDSYYVRRAAAYALGKI---GDERAVE--------PLIKALKDE 62
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
W V+ A L G I + + L IK L+D VR SAA+ALG++
Sbjct: 63 DAW-VRRAAADAL------GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQI--- 108
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403
+ V L+ +L+ D +R A AL G + R L + +
Sbjct: 109 --GDERAVEPLIKALKDEDWFVRIAAAFAL-GEIGDE----------RAVEPLIKALKDE 155
Query: 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQELLN 2436
D VR SAA LG + ++ +++L
Sbjct: 156 DGWVRQSAADALG----EIGGERVRAAMEKLAE 184
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 48/231 (20%)
Query: 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRG 1357
V+ + L S V+RA + L + DE L+ L D + RR
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRA 69
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
AA L + L + L D + R+ A +A LG++ +
Sbjct: 70 AADALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE- 111
Query: 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS
Sbjct: 112 --RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQS 162
Query: 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528
+ LG + ++ + ++ + L+ S
Sbjct: 163 AADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAA 70
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+ LG + + A + L++ D++G ++ LG+ + L D
Sbjct: 71 ADALGQIGDERA---VEPLIKALKDEDGWVR----QSAAVALGQIGDERAVEPLIKALKD 123
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
VR AA L EI + LI +L RQ A ALG
Sbjct: 124 EDWFVRIAAAFA-----------LGEIGDERAVEPLIKALKDEDGWVRQSAADALG---- 168
Query: 1915 KLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
++G + + + + + R+ L
Sbjct: 169 EIGG---ERVRAAMEKLAETGTGFARKVAVNYLET 200
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 26/178 (14%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
++ + ++ L DE+ VR AA A L + ++ L+ A++D ++ +RQS+
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADA---LGQIGDERAVEPLIKALKD----EDGWVRQSA 101
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
LG + + A L+ +D A LG + L D
Sbjct: 102 AVALGQIGDERAVEPLIKALK--DEDWFVRIAA-----AFALGEIGDERAVEPLIKALKD 154
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGEL 1912
VRQ+A L EI + + + + R+VA L
Sbjct: 155 EDGWVRQSAA-----------DALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 38/226 (16%)
Query: 1914 RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973
R P + + + L+D S R+ L ++ + + + A
Sbjct: 10 AAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKA 58
Query: 1974 LCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSV 2031
L D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 59 LKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI--- 108
Query: 2032 RTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQ 2091
+ ++ L A AL E+ + L+ A+ D+D V+
Sbjct: 109 GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWVR 160
Query: 2092 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
A +A + E G E + + + K R+ + +
Sbjct: 161 QSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 199
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 33/134 (24%)
Query: 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503
A H A LR +P + + +L+D+ + +R A+ ALG++
Sbjct: 1 AWSHPQFEKAAAPLRADPEKV----------EMYIKNLQDDSYYVRRAAAYALGKI---- 46
Query: 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 2563
V+ L + AL D+ + VRR A AL + + A+ L
Sbjct: 47 ------GDERAVEPL---IKALKDEDAWVRRAAADALGQI--GDERAV--------EPLI 87
Query: 2564 ECLKDGSTPVRLAA 2577
+ LKD VR +A
Sbjct: 88 KALKDEDGWVRQSA 101
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 45/193 (23%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 70
Query: 1558 DILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612
A +L + V + + L++ ++ AA +G +
Sbjct: 71 -------------ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA---- 113
Query: 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 1672
+ + K L D VR AA A+G + V L+ ALK ++
Sbjct: 114 --------VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGW 158
Query: 1673 VERSGAAQGLSEV 1685
V R AA L E+
Sbjct: 159 V-RQSAADALGEI 170
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 30/187 (16%)
Query: 1996 AGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN 2053
A ++A E V + L+DD A L +I + ++ L +
Sbjct: 12 APLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI---GDERAVEPLIKALKD-EDAWVR 67
Query: 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
A AL ++ + L+ A+ D+D V+ + AA + + DE VE L
Sbjct: 68 RAAADALGQIGDE-------RAVEPLIKALKDEDGWVR---QSAAVALGQIGDERAVEPL 117
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ L D +R ++A+ +G + LI L D D +A
Sbjct: 118 IKAL----KDEDWFVRIAAAFALGEI----------GDERAVEPLIKALKDEDGWVRQSA 163
Query: 2174 WEALSRV 2180
+AL +
Sbjct: 164 ADALGEI 170
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 46/248 (18%), Positives = 78/248 (31%), Gaps = 60/248 (24%)
Query: 2333 AALALGKLSALSTRVDP-LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391
+ + DP V + +LQ +R A AL G + R
Sbjct: 3 GSHHHHHHT------DPEKVEMYIKNLQDDSYYVRRAAAYAL-GKIGDE----------R 45
Query: 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVL 2451
L + +D VR +AA LG + ++ L+ R + +
Sbjct: 46 AVEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWVRQSAAV 98
Query: 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 2511
+ A+ + L +LKDE + +R A+ ALG +
Sbjct: 99 ALGQI--GDERAV----------EPLIKALKDEDWFVRIAAAFALGEI----------GD 136
Query: 2512 TVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGST 2571
V+ L + AL D+ VR+ A AL + A+ + + G+
Sbjct: 137 ERAVEPL---IKALKDEDGWVRQSAADALGEI--GGERVR--------AAMEKLAETGTG 183
Query: 2572 PVRLAAER 2579
R A
Sbjct: 184 FARKVAVN 191
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 53/222 (23%), Positives = 85/222 (38%), Gaps = 48/222 (21%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
IK LQD + VR +AA ALGK+ + V L+ +L+ DA +R A AL G +
Sbjct: 20 IKNLQDDSYYVRRAAAYALGKI-----GDERAVEPLIKALKDEDAWVRRAAADAL-GQIG 73
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
R L + +D VR SAA LG + D + + L + L
Sbjct: 74 DE----------RAVEPLIKALKDEDGWVRQSAAVALGQIG----DERAVEPLIKALK-- 117
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 2498
W R + + A+ + L +LKDE +R+++ ALG
Sbjct: 118 -DEDWFVRIAAAFALGEI--GDERAV----------EPLIKALKDEDGWVRQSAADALGE 164
Query: 2499 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 2540
+ G + A++ + R+ A++ L
Sbjct: 165 I------GGER-------VRAAMEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 57/242 (23%)
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED 1469
+P + + + + D VR AA L G + + L+K L+D
Sbjct: 7 HHHHTDP---EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKD 56
Query: 1470 KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529
+ ++++ LG + + V L + L D V+ + AL Q+G
Sbjct: 57 EDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD- 105
Query: 1530 IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRG 1584
V L+ L D + + + A +L + V + +
Sbjct: 106 ------ERAVEPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKA 146
Query: 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644
L++ ++ AA +G + ++K+ R VA +
Sbjct: 147 LKDEDGWVRQSAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLE 194
Query: 1645 SL 1646
+
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 35/181 (19%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
IK L+D VR +AA ALG++ + V L+ +L+ D +R++ AL G +
Sbjct: 51 IKALKDEDAWVRRAAADALGQIGD-----ERAVEPLIKALKDEDGWVRQSAAVAL-GQIG 104
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438
R L + +D VR++AA LG + ++ L+
Sbjct: 105 DE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKAL 147
Query: 2439 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 2498
R + ++ + R+ + L
Sbjct: 148 KDEDGWVRQSAADALGEI--GGERVR----------AAMEKLAETGTGFARKVAVNYLET 195
Query: 2499 L 2499
Sbjct: 196 H 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 49/224 (21%)
Query: 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
P+ ++ + + L S +R AA LG++ E++++ PLI+ + D
Sbjct: 13 PEKVEMYI----KNLQDDSYYVRRAAAYALGKI---GDERAVE--------PLIKALKDE 57
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
W V+ A L G I + + L IK L+D VR SAA+ALG++
Sbjct: 58 DAW-VRRAAADAL------GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQI--- 103
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403
+ V L+ +L+ D +R A AL G + R L + +
Sbjct: 104 --GDERAVEPLIKALKDEDWFVRIAAAFAL-GEIGDE----------RAVEPLIKALKDE 150
Query: 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 2447
D VR SAA LG + ++ +++L + + AR
Sbjct: 151 DGWVRQSAADALG----EIGGERVRAAMEKLAE---TGTGFARK 187
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 48/231 (20%)
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRGAA 1359
V+ + L S V+RA + L + DE L+ L D + RR AA
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRAAA 66
Query: 1360 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419
L + L + L D + R+ A +A LG++ +
Sbjct: 67 DALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE--- 106
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS+
Sbjct: 107 RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQSAA 159
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
LG + ++ + ++ + L+ S+I
Sbjct: 160 DALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 33/214 (15%)
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1796
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAAA 66
Query: 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856
+ LG + + A L+ +D ++ LG+ + L D
Sbjct: 67 DALGQIGDERAVEPLIKALK--DEDGWVR-----QSAAVALGQIGDERAVEPLIKALKDE 119
Query: 1857 SLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
VR AA L EI + LI +L RQ A ALGE
Sbjct: 120 DWFVRIAAA-----------FALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE---- 164
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
+G + + + + + R+ L
Sbjct: 165 IGG---ERVRAAMEKLAETGTGFARKVAVNYLET 195
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 32/182 (17%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+ + K L D VR AA A+G + V L+ ALK ++ V R AA
Sbjct: 47 VEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWV-RQSAAV 98
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
ALG + E + +I+ + VR +LG + + ++ +
Sbjct: 99 -------ALGQIGDERAVEPLIKALKDEDWFVRIAAA-------FALG-EIGD--ERAVE 141
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L DE+ VR +A A L E + E R+ +V L
Sbjct: 142 PLIKALKDEDGWVRQSAADA---LGEIGGERVRAAMEKLAET----GTGFARKVAVNYLE 194
Query: 1801 DL 1802
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 54/289 (18%), Positives = 87/289 (30%), Gaps = 91/289 (31%)
Query: 2056 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 2115
P + + + DD V+ AA + + DE VE L+
Sbjct: 3 GSHHHHHHTDPE-------KVEMYIKNLQDDSYYVRR---AAAYALGKIGDERAVEPLIK 52
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
L D A +RR++A +G + LI L D D +A
Sbjct: 53 AL----KDEDAWVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAV 98
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235
AL + I D +A++PL+
Sbjct: 99 ALGQ----------------IGD-------------------------ERAVEPLIKA-- 115
Query: 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 2295
L +R AA LGE+ E++++ PLI+ + D V+ +
Sbjct: 116 --LKDEDWFVRIAAAFALGEI---GDERAVE--------PLIKALKDE-DGWVRQSAADA 161
Query: 2296 LSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 2344
L I GG ++ + K + T R A L +L
Sbjct: 162 LGEI---GGERVRAAM-------EKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 41/232 (17%)
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
+ H H + + + ++D D++ +R+++ LG + + A + L++
Sbjct: 1 MRGSHHHHHHTDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGDERAV---EPLIKA 53
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
D++ RA + LG+ + L D VRQ+A
Sbjct: 54 LKDEDAWVR----RAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA-----------V 98
Query: 1878 TLKEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936
L +I + LI +L R A ALGE+ G+ + L + LKD
Sbjct: 99 ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI----GD---ERAVEPLIKALKDED 151
Query: 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
RQ L E+ + + + R+ A
Sbjct: 152 GWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 38/227 (16%)
Query: 1913 VRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972
P + + + L+D S R+ L ++ + + +
Sbjct: 4 SHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIK 52
Query: 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILS 2030
AL D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 53 ALKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI-- 103
Query: 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDV 2090
+ ++ L A AL E+ + L+ A+ D+D V
Sbjct: 104 -GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWV 154
Query: 2091 QSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
+ A +A + E G E + + + K R+ + +
Sbjct: 155 RQSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 194
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 37/189 (19%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT-KYS 1556
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 65
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616
D L D ++ L+ + L++ ++ AA +G +
Sbjct: 66 ADAL-----GQIGDERAVEPLI----KALKDEDGWVRQSAAVALGQIGDERA-------- 108
Query: 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 1676
+ + K L D VR AA A+G + V L+ ALK ++ V R
Sbjct: 109 ----VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGWV-RQ 156
Query: 1677 GAAQGLSEV 1685
AA L E+
Sbjct: 157 SAADALGEI 165
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 1e-11
Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 20/223 (8%)
Query: 2331 SSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390
SS + G A T + + I K + A S
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGE 70
Query: 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSV 2450
+ + D VR+ A + G +S+ L+ ++ +W +
Sbjct: 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYLSK-----DKEILIFMRDEVSKDNNWRVQEVLA 125
Query: 2451 LVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPAN 2510
F F + + L + LK R A+T+ L N
Sbjct: 126 KAFDEFCKK--------IEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKEN 175
Query: 2511 TTVVVDILASVVSALHDDSSE-VRRRALSALKSVAKANPSAIM 2552
+ +A L +D SE VR+ +AL+ ++K P +
Sbjct: 176 PNEAIRRIA----DLKEDVSEYVRKSVGNALRDISKKFPDLVK 214
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 4e-11
Identities = 83/697 (11%), Positives = 227/697 (32%), Gaps = 85/697 (12%)
Query: 1633 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV--LAALG 1690
E+ + AI + I + + + + L+ + + ++ + + +
Sbjct: 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312
Query: 1691 TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI-LDGLADE 1749
E+ ++ H + F + ++ + G
Sbjct: 313 VALGENHSRALLDQVEHWQ--------------------SFLALVNMIMFCTGIPGHYPV 352
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
NE+ L + L + +L + R +L+ LL K
Sbjct: 353 NETTSSLTLTFWYTLQDD--------ILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFP 404
Query: 1810 SGKALLEGGSDDEGASTEAHGR------AIIEVLGRDKRNEVLA----ALYMVRSDVSLS 1859
S + SD++ + E+LG + + + L S
Sbjct: 405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQ 464
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
+A L+ +++I +++P L+ LI ++ S+ + +G L L +
Sbjct: 465 HTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH 523
Query: 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
++ S++P++ L +P S + + + K L + ++ + L
Sbjct: 524 PVMINSVLPLVLHALGNPELSVSSVSTL---KKICRECKYDLPPYAANIVAVSQDVLMKQ 580
Query: 1978 I------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE---DDQTSDTALDGLKQI 2028
I + + ++ G S L ++ + ++ + LE ++ + + + I
Sbjct: 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHI 640
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088
L + + + + + ++ +LS +D
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ 700
Query: 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148
V+++ ++V ++D+ +V +L + +G ++I ++
Sbjct: 701 VVEAVCAIFEKSVKTLLDD--FAPMVPQLCEMLGRMYSTIPQA----------------- 741
Query: 2149 DEAPNMISTLIVLLSDSDST--TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
A ++ L+ + + + + A + ++ V ++ ++ + ++ +
Sbjct: 742 -SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQA 800
Query: 2207 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSL 2265
+RK P L C ++ + + L A + + EL+ E +S+
Sbjct: 801 LKRK----PDLF--LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESV 854
Query: 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 2302
+ V L+ + + Q +++ + I+
Sbjct: 855 GKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFA 891
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 22/222 (9%), Positives = 75/222 (33%), Gaps = 14/222 (6%)
Query: 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---SQCLPKIVPKLTEVLT-DTHPKVQ 1516
+ + W+ + +++ ++L SQ ++ ++ D + +
Sbjct: 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV 78
Query: 1517 SAGQTALQQVGSVIKNPEIAS-----LVPTLLMGLTDPNDHTKYSLDILLQTTFVN---T 1568
+ +++ + +K P + + LL + ++ L T
Sbjct: 79 ALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKK 1626
+ ++ + ++ ++ + + + Q+ + + ++P V +
Sbjct: 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198
Query: 1627 VLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
++ D P +R++ + LI+ G F + L + +
Sbjct: 199 IVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 18/177 (10%)
Query: 1620 LLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNV 1673
LL ++ D + ++AA+++ + + F + + LLD K +V
Sbjct: 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSV 120
Query: 1674 ERSGAAQGLSEVL----AALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL----PR 1725
+ L + + E +L DI+ + H+ +R LF
Sbjct: 121 -IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ +V+P ++ + D ++R + + + +E
Sbjct: 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES---FAILIKIFGMNTFVKTLEH 233
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 14/195 (7%)
Query: 1343 LDQLMKSDKYGERRGA----AFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ + S K+ +R A + K +S + + + +
Sbjct: 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80
Query: 1399 ALLAFECLCEKLGR--LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 1456
A + E +C+KL + YV + LL ++ +V EA A +
Sbjct: 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS 140
Query: 1457 KL----VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----QCLPKIVPKLTEVL 1508
+L +L+ ++ K + + QL A S ++VP + +++
Sbjct: 141 SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200
Query: 1509 TDTHPKVQSAGQTAL 1523
DT P +++ G +
Sbjct: 201 NDTQPAIRTIGFESF 215
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 26/197 (13%), Positives = 59/197 (29%), Gaps = 11/197 (5%)
Query: 2424 DGQLADLLQELLN-LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLK 2482
++LL + + + A + + + L K
Sbjct: 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTK 114
Query: 2483 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS---- 2538
++K + EA KAL L + + A++ D+L ++ + + ++R
Sbjct: 115 EKKPSVIEAIRKAL--LTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172
Query: 2539 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQ 2598
++K + P + + + D +R ++ G
Sbjct: 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF-GMNTF---V 228
Query: 2599 KFITGLDARRLSKFPEH 2615
K + LD + K E
Sbjct: 229 KTLEHLDNLKRKKIEET 245
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 9/167 (5%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLISSLASSSSERRQVAGRA 1908
+++ D ++ A + I K+ + ++ L+ + +A
Sbjct: 68 IIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKA 127
Query: 1909 LGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLLS 1961
L + + ++ + +K + R + M +
Sbjct: 128 LLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187
Query: 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008
DE++P + + D+ +R +F+ L K GM + + L
Sbjct: 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 9e-11
Identities = 65/328 (19%), Positives = 111/328 (33%), Gaps = 28/328 (8%)
Query: 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASR----R 1940
+M + +SS + + LG + G + I+
Sbjct: 395 KVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454
Query: 1941 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF-KSAGMQ 1999
G +G+ G + + S E+ ++ L + E+A L + +
Sbjct: 455 HGASLGI-------GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE 507
Query: 2000 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL-PLSAFNAHALG 2058
AI ++ + T A+ GL I R I L L +
Sbjct: 508 AIHDMFTYSQETQHGNITRGLAV-GLALINYGRQELADDLITKMLASDESLLRYGGAFTI 566
Query: 2059 ALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118
ALA AG G N + L A+ D + DV+ A A V L+ D V +V L
Sbjct: 567 ALAY-AGTGNNSA---VKRLLHVAVSDSNDDVRRAAVIALGFV-LLRDYTTVPRIVQLLS 621
Query: 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
K + A +R +A+ +G L + I L L D AA ALS
Sbjct: 622 K---SHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALS 672
Query: 2179 RVVASVPKEVQPSYIKVIRDAISTSRDK 2206
++ +++ P + ++ +S +K
Sbjct: 673 MILIQQTEKLNPQVADINKNFLSVITNK 700
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-07
Identities = 70/424 (16%), Positives = 130/424 (30%), Gaps = 75/424 (17%)
Query: 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168
S + L +G Q + ++ +G +K + + E +++ + S
Sbjct: 355 TDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGN----LLEGKKVMAPYLPGSRASSRF 410
Query: 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF-CLPKAL 2227
+ L + A ++ +I + TS D++ G L G + A
Sbjct: 411 IKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN 470
Query: 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ 2287
+ + L + SA E AALG+G L + + + + +
Sbjct: 471 IEVYEALKEVLYNDSATSGEAAALGMG-LCMLGTGKP------EAIHDMFTYSQET---- 519
Query: 2288 VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSA-ALALGKLSALSTR 2346
R A LAL
Sbjct: 520 ------------------------------------QHGNITRGLAVGLALINYGR-QEL 542
Query: 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
D L+ +L ++ +R + L +AG +SAVK +L V +D
Sbjct: 543 ADDLITKML---ASDESLLRYGGAFTI--ALAYAGTGNNSAVK----RLLHVAVSDSNDD 593
Query: 2407 VRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 2466
VR +A LG + + + + L+ S + R G+
Sbjct: 594 VRRAAVIALGFVLLRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--- 646
Query: 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526
S +D L KD +R+A+ AL +L+ Q + + SV++ H
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701
Query: 2527 DDSS 2530
+
Sbjct: 702 QEGL 705
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-06
Identities = 53/374 (14%), Positives = 101/374 (27%), Gaps = 52/374 (13%)
Query: 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279
G ++ LP L + A LG + + + K P +
Sbjct: 353 GTTDNSFIKANLPW----LGKAQNWAKFTATASLGVIHKGNLLEGKKVMA-----PYLPG 403
Query: 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
+ ++ I G + + + A+L +G
Sbjct: 404 SRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG- 462
Query: 2340 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399
L+A+ + + L L A EA + G+ + + YS
Sbjct: 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGM-GLCMLGTGKPEAIHDMFTYSQETQ- 520
Query: 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRH 2459
+ R A + I E AD L + + +S R+G A
Sbjct: 521 ---HGNITRGLAVGLALINYGRQEL---ADDL--ITKMLASDESLLRYGGAFTIALAYAG 572
Query: 2460 NPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALG-----------RLLLHQIQSGP 2508
+ ++ L ++ D +R A+ ALG R++ +S
Sbjct: 573 TGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHN 625
Query: 2509 ANTTVVV--------------DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554
A+ + + D VR+ A+ AL + +
Sbjct: 626 AHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685
Query: 2555 VALFGPALAECLKD 2568
VA + +
Sbjct: 686 VADINKNFLSVITN 699
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 4e-10
Identities = 76/480 (15%), Positives = 160/480 (33%), Gaps = 99/480 (20%)
Query: 2092 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151
++ A+ + + GV + S++++ + + S+ +DE
Sbjct: 2 AMGFHEAQINNMEMAPGGV--ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEV 59
Query: 2152 ---PNMISTLIVLLSDSDSTTV--AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 2206
P +++ + L ++ T+ +AW L+ + + +++ A
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAW-VLTNIASG-----NSLQTRIVIQA------- 106
Query: 2207 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS-- 2264
+PIF++ L S +++EQA LG + ++
Sbjct: 107 ----------------------GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 2265 -LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG-----IALKPFLPQLQTTF 2318
L ++P PL+++ + + + LS + R + P L L
Sbjct: 145 VLDCNILP---PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVL---- 197
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
L S V + A AL LS +A++ A GV +
Sbjct: 198 SWLLFVSDTDVLADACWALSYLSD------------------GPNDKIQAVIDA--GVCR 237
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQEL 2434
L +L+ H+D V A +G + + LQ L
Sbjct: 238 R----------------LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281
Query: 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTK 2494
L+L SSP + + + + N + I + + +I L S L+ +F R+ +
Sbjct: 282 LHLLSSPKESIKKEACWTISNITAGNRAQI-QTVIDANIFPALISILQTAEFRTRKEAAW 340
Query: 2495 ALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554
A+ V + + + L S++ + AL+ L+++ + +
Sbjct: 341 AITNATSGGSAEQ-IKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN 399
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 3e-08
Identities = 65/422 (15%), Positives = 130/422 (30%), Gaps = 73/422 (17%)
Query: 2058 GALAEVAGPGLNF---HLGTILPALLSAMGDDDMDVQSLA---------KEAAETVTLVI 2105
GA+ N G I ++ + + Q A KE + VI
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 2106 DEEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLL 2162
G V V L + +++ SA+++ + + +V +A + I LL
Sbjct: 61 STPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELL 116
Query: 2163 SDSDSTTVAAAWEALSRVVASVPKEVQ-----------------PSYIKVIRDAIST--- 2202
S A AL + + + + R+A+
Sbjct: 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176
Query: 2203 -SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 2261
R K + + P L + L ++ A L L + +
Sbjct: 177 LCRGKSPPPEFA------------KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224
Query: 2262 EQSLKEFVI--PITGPLIRIIGDRFPWQVKSAILSTLSIII-----RKGGIALKPFLPQL 2314
++ + VI + L+ ++ +V S L + I+ + I L L
Sbjct: 225 DK--IQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281
Query: 2315 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGD------LLSSLQVSDAGIREA 2368
+ L +++ A + ++A + V D L+S LQ ++ R+
Sbjct: 282 ----LHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337
Query: 2369 ILTALKGVLKHAG-KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
A+ + + V++ L DL+ D + A + L + + E
Sbjct: 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397
Query: 2428 AD 2429
+
Sbjct: 398 RN 399
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-08
Identities = 68/464 (14%), Positives = 147/464 (31%), Gaps = 98/464 (21%)
Query: 2004 IVPTLLHALEDDQTSD--TALDGLKQILS------VRTTAVLPHILPKLVHLPLSAFNAH 2055
I ++ + +A +++LS + P ++ + V N
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 2056 ----ALGALAEVAGPGLNFHL----GTILPALLSAMGDDDMDVQ--------SLAKEAAE 2099
+ L +A +P + + + DVQ ++A ++
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMIST 2157
V+D + L+ K N+ ++ R++ + + K+ +P ++
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKSPPPEFAKVSP-CLNV 196
Query: 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217
L LL SD+ +A A ALS + + I+ + DA
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLS-----DGPNDKIQAVIDA------------------ 233
Query: 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITG 2274
+ ++ L+ ++ A +G ++ Q+ L +
Sbjct: 234 -----------GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ--- 279
Query: 2275 PLIRIIGDRFPWQVKSAILSTLSIII-----RKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329
L+ ++ K A T+S I + + P L I LQ +
Sbjct: 280 SLLHLLSSPKESIKKEACW-TISNITAGNRAQIQTVIDANIFPAL----ISILQTAEFRT 334
Query: 2330 RSSAALALGKLSALSTR-------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382
R AA A+ ++ + + L L V D+ I + L L+ +L+ +
Sbjct: 335 RKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394
Query: 2383 -SVSSAVKIRVYSV----------LKDLVYHDDDHVRVSAASIL 2415
+ + I Y ++ L H++ + A ++
Sbjct: 395 EAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 5e-06
Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 30/280 (10%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDP----------LVGDLLSSLQVSD-AGIRE 2367
I+ + + + SA KL LS +P +V + L+ + ++
Sbjct: 26 IEMIFSKSPEQQLSATQKFRKL--LSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQF 83
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
L + ++ + +L+ + + V+ A LG ++ +
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143
Query: 2428 ----ADLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPL--FLSILDRLKSS 2480
++L LL L S +V + R + + L++L L
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL--- 200
Query: 2481 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALS 2538
L + + AL L V+D + +V L + +V AL
Sbjct: 201 LFVSDTDVLADACWALSYLSDGP----NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256
Query: 2539 ALKSVAKANPSAIMVHVALFG-PALAECLKDGSTPVRLAA 2577
A+ ++ + V + +L L ++ A
Sbjct: 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-05
Identities = 69/397 (17%), Positives = 143/397 (36%), Gaps = 40/397 (10%)
Query: 1285 GALAKHLAKDD----PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT--- 1337
GA+ H A+ + + +++++ + S Q + + L+ S + P
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLL-SKEPNPPIDEV 59
Query: 1338 -----LVSRLLDQLMKSDKYGERRGAAFGLAGVVKG--FGISSLKKYGIAATLREGLADR 1390
+V+R ++ L + + + +A+ L + G + + G E L
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-LLSS 118
Query: 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---- 1443
+E A+ A + + YV+ + PLL + + + A A
Sbjct: 119 EFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177
Query: 1444 ARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVP 1502
R V L L L + L ++ ++ + +
Sbjct: 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-------ASLVPTLLMGLTDPNDHT-K 1554
+L E+L KV S AL+ VG+++ +I S + +LL L+ P + K
Sbjct: 238 RLVELLMHNDYKVVSP---ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294
Query: 1555 YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT-EPK 1611
+ + T N + A + P + L+ T+K+AA + N S + E
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
+ +G + P + +L ++ VA + +++R
Sbjct: 355 KYLVELGCIKP-LCDLLTVMDSKIVQVALNGLENILR 390
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 54/303 (17%), Positives = 100/303 (33%), Gaps = 29/303 (9%)
Query: 1483 GAMAYCAPQQLSQCLPK---IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL- 1538
GAM + Q + + I + E++ P+ Q + +++ S NP I +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 1539 -----VPTL--LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERS 1589
V + + S +L N++ + A VPI L
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ +++A +GN+ T +D + +L P ++ + A A+ +L RG
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-----------TVYFEHIL 1698
VS L+ L S + L++ AL V +
Sbjct: 181 KSPPPEFAKVSPCLNVL----SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ-VLPAILDGLADENESVRDAA 1757
++ H V L + +Q Q L L ++L L+ ES++ A
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
Query: 1758 LGA 1760
Sbjct: 297 CWT 299
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-04
Identities = 55/372 (14%), Positives = 108/372 (29%), Gaps = 35/372 (9%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV--LMNTLISSLASSSSERRQV-AGR 1907
M+ S A K + + E++ ++ + L + Q +
Sbjct: 28 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 87
Query: 1908 ALGELVRKLGERVLP----SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963
L + + +PI L ++ L + + +
Sbjct: 88 VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147
Query: 1964 DELIPTIRTALC-DSILEVRESAGLAFSTLFKS----AGMQAIDEIVPTLLHALE--DDQ 2016
++P + + L + +A A S L + + + L L D
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207
Query: 2017 TSDTALDGLKQILSV---RTTAVLPH-ILPKLVHL---PLSAFNAHALGALAE-VAGPGL 2068
A L + + AV+ + +LV L + AL A+ V G +
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267
Query: 2069 NFHLGT---ILPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSEL 2117
+ L +LL + ++ ++ + VID +L+S L
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177
+ + YLV+ I L LL+ DS V A L
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL--GCIKPLCDLLTVMDSKIVQVALNGL 385
Query: 2178 SRVVASVPKEVQ 2189
++ +E +
Sbjct: 386 ENILRLGEQEAK 397
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 8e-09
Identities = 53/408 (12%), Positives = 129/408 (31%), Gaps = 67/408 (16%)
Query: 2076 LPALLSAMGDDDMDVQS---------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
+ ++ + ++++ Q L++E + +I + VS L K + +
Sbjct: 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCS 115
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNM-ISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
I+ SA+ + + I I LL+ + A AL +
Sbjct: 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175
Query: 2186 K---------------------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224
++ +R+ T + R K P+
Sbjct: 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL-------- 227
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI--PITGPLIRIIGD 2282
A++ +LP ++ L E+ + + L + +E+ E V+ + L++++G
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER--IEMVVKKGVVPQLVKLLGA 285
Query: 2283 RFPWQVKSAILSTLSIII-----RKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
+ + L + I+ + + L L + ++ A +
Sbjct: 286 TEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF----PSLLTNPKTNIQKEATWTM 340
Query: 2338 GKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAG-KSVSSAVKI 2390
++A V + L+ L +D ++ A+ + + V
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400
Query: 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCME----DGQLADLLQEL 2434
+ L +L+ D + + + Q E +L+ +++E
Sbjct: 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 448
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-07
Identities = 53/380 (13%), Positives = 124/380 (32%), Gaps = 37/380 (9%)
Query: 2230 LLPIFLQGLI-SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 2288
L+P F+ L + + ++ ++A L + TSEQ+ I ++
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 2289 KSAI--LSTLSI-------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339
+ A+ L ++ ++ K G A+ P L L + L + L
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACG---YLRNLTWTLSN 216
Query: 2340 L------SALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY 2393
L + V+ ++ L+ L +D + A+ + + + VK V
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276
Query: 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASSPSWAARHGS 2449
L L+ + + A +G + ++ A L +L ++P + +
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336
Query: 2450 VLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 2509
+ I + ++ L L F ++ + A+
Sbjct: 337 TWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG---GTVE 392
Query: 2510 NTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKA-------NPSAIMVHVALFGP 2560
+V I+ +++ L +++ + L A+ ++ +A +IM+
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452
Query: 2561 ALAECLKDGSTPVRLAAERC 2580
+ + + V A+
Sbjct: 453 KIEALQRHENESVYKASLNL 472
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 1e-08
Identities = 61/403 (15%), Positives = 120/403 (29%), Gaps = 58/403 (14%)
Query: 2076 LPALLSAMGDDDMDVQS---------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 2126
LP + + DDM Q L++E + +VI V LV + + +
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---NQPE 145
Query: 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA--AAWEALSRVVASV 2184
++ +A+ + + L + L + S V A W AL V
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIW-ALGNVAGDS 204
Query: 2185 P----------------KEVQPSYIKVIRDAIST----SRDKERRKKKGGPILIPGFCLP 2224
+ +IR A T R K+ +
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD------------W 252
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284
+ LP + + S E A + L + E + I L+ ++
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 2285 PWQVKSAILSTLSIIIRKGGIALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
V++ L + I+ + + + + L ++ A + ++A
Sbjct: 313 T-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371
Query: 2344 STRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKS---VSSAVKIRVYS 2394
+T V D L+ L+V++ ++ A+ + + V
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431
Query: 2395 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437
L DL+ D+ + L + + E + A L N
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 474
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-08
Identities = 63/472 (13%), Positives = 149/472 (31%), Gaps = 106/472 (22%)
Query: 2000 AIDEIVPTLLHALEDDQTSD--TALDGLKQILSVRT-----TAVLPHILPKLVHLPLSAF 2052
+ + +P + L D + +A +QILS + ++P+LV
Sbjct: 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Query: 2053 NA----HALGALAEVAGPGLNFHLGTI-----LPALLSAMGDDDMDVQ--------SLAK 2095
A AL +A G + + +P + + ++V+ ++A
Sbjct: 144 PEMLQLEAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202
Query: 2096 EAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPN 2153
++ + V+ +E ++ N+ S+ R++ + + K + +
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ- 257
Query: 2154 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKG 2213
+ TL L+ D+ T+ A A+S + ++ +
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDG-------------------PQEAIQAVIDV 298
Query: 2214 GPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273
+ ++ L S ++ A +G ++ Q+ +
Sbjct: 299 R---------------IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 343
Query: 2274 GPLIRIIGDRFPWQVKSA--ILSTLS--------IIIRKGGIALKPFLPQLQTTFIKCLQ 2323
L ++ K A +S ++ +I I +K L+
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP----------LVKLLE 393
Query: 2324 DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS---------LQVSDAGIREAILTALK 2374
+ + A A+ S+ + ++ L+S L+++D I E L AL+
Sbjct: 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453
Query: 2375 GVLKHAGKSVSSAVKIRVYSV-----------LKDLVYHDDDHVRVSAASIL 2415
+LK + + + + +++D + A I+
Sbjct: 454 NILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 66/383 (17%), Positives = 143/383 (37%), Gaps = 32/383 (8%)
Query: 1293 KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT-------LVSRLLDQ 1345
+ ++ + ++ LN+ Q + + ++ S + P +V RL++
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL-SREHRPPIDVVIQAGVVPRLVEF 138
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
+ ++ + AA+ L + G + + L + + + A+ A
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ-AIWAL 197
Query: 1404 ECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---ARAMMSQLSAQGVK 1457
+ + YV+Q M P+L + S++ +R A R Q V
Sbjct: 198 GNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS 256
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
LP+L K + T + + ++ + +I +L E+L+ VQ
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316
Query: 1517 SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHT-KYSLDILLQTTFVNTV 1569
+ A+ + V N A ++P L + L+ P ++ K + + T NT
Sbjct: 317 TPALRAVGNI--VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 1570 DAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVK 1625
++ A L+P + + L +TKK+A + N S + D+I Y+ + +
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR 1648
+L + V A+ ++++
Sbjct: 435 DLLEIADNRIIEVTLDALENILK 457
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 27/266 (10%)
Query: 1284 TGALAKHLAKDDPKV------HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
AL +A D ++ +L + N+ ++ R + LS L + + +
Sbjct: 194 IWALGN-VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 1338 LVSR----LLDQLMKSDKYGERRGAAFGLAGVVKGF--GISSLKKYGIAATLREGLADRN 1391
V L +L+ S A + ++ + G I ++ I L E L
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSHE 311
Query: 1392 SAKRREGALLAFECLC----EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447
S + AL A + + + V+ L LLL + + + +EA +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNIT 369
Query: 1448 MS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL----PKI 1500
Q+ A ++P L+K LE ++TK+ + + + Q+
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQV 1526
+ L ++L ++ AL+ +
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENI 455
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 7e-04
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 2426 QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK 2485
QL L ++ +S + + + F L + ++ RL +++ +
Sbjct: 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Query: 2486 FP-LREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKS 2542
L+ + AL + A T VVVD + + L+ S EV+ +A+ AL +
Sbjct: 144 PEMLQLEAAWALTNIASGT----SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 2543 VAKANPS---AIMVHVALFGPALAECLKDGSTPVRLAA 2577
VA + ++ A+ + + A
Sbjct: 200 VAGDSTDYRDYVLQCNAM--EPILGLFNSNKPSLIRTA 235
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 55/354 (15%), Positives = 104/354 (29%), Gaps = 127/354 (35%)
Query: 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSS 2132
G+ LP + + DDM Q A S++L + ++ +
Sbjct: 11 GSELPQMTQQLNSDDMQEQ---LSATRKF-------------SQILSDGNEQIQAVIDAG 54
Query: 2133 AYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 2192
A + L+ LLS + + A ALS + + +++Q
Sbjct: 55 A---------------------LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ--- 90
Query: 2193 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALG 2252
+ DA G LP +Q L S + ++ ++A
Sbjct: 91 --AVIDA-------------GA----------------LPALVQLLSSPNEQILQEALWA 119
Query: 2253 LGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312
L + +EQ + +I G + P L
Sbjct: 120 LSNIASGGNEQ--------------------------------IQAVIDAGAL---PAL- 143
Query: 2313 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR----------VDPLVGDLLSSLQVSD 2362
++ L + A AL +++ + LV LLSS +
Sbjct: 144 ------VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSS---PN 193
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416
I + L AL + + + + L+ L H+++ ++ A L
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 36/235 (15%)
Query: 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQ 2287
LP Q L S + + A +++ +EQ + +P L++++
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALP---ALVQLLSSPNEQI 70
Query: 2288 VKSAI--LSTLSI--------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
++ A+ LS ++ +I G + ++ L + A AL
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPA----------LVQLLSSPNEQILQEALWAL 120
Query: 2338 GKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391
+++ V D L+ L + I + L AL + + + + +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180
Query: 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASSPS 2442
L L+ ++ + A L ++ + + A L++L L S +
Sbjct: 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 40/212 (18%)
Query: 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQ 2287
LP +Q L S + + A L ++ +EQ + +P L++++
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALP---ALVQLLSSPNEQI 70
Query: 2288 VKSAI--LSTLSI--------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 2337
++ A+ LS ++ +I G + ++ L + A AL
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPA----------LVQLLSSPNEQILQEALWAL 120
Query: 2338 GKLSALSTR----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387
+++ + LV LLSS + I + L AL + + +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALV-QLLSS---PNEQILQEALWALSNIASGGNEQKQAV 176
Query: 2388 VKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419
+ L+ L H+++ ++ A L +
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-06
Identities = 47/267 (17%), Positives = 81/267 (30%), Gaps = 33/267 (12%)
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRI 2279
+ + LQ ++ S LR A + L L K + + G L+
Sbjct: 194 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN--KATLCSMKGCMRALVAQ 251
Query: 2280 IGDRFPWQVKSAI-----LSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRT-VRSSA 2333
+ + LS + + K + + L ++C + + S
Sbjct: 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL----MECALEVKKESTLKSV 307
Query: 2334 ALALGKLSALSTR-----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382
AL LSA T + LVG L Q + I E+ L+ V
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367
Query: 2383 SVSSAVKIRVYSVLKDLV---YHDDDHVRVSAASILGIMSQCMEDGQLA----DLLQELL 2435
+ +R + L+ L+ + +A L +S Q A + L
Sbjct: 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427
Query: 2436 NLASSPSWAARHGSVLVFATFLRHNPS 2462
NL S GS + + P+
Sbjct: 428 NLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 4e-06
Identities = 87/762 (11%), Positives = 221/762 (29%), Gaps = 126/762 (16%)
Query: 1896 SSSSERRQVAGRALGELVRKLG--ERVLPS-IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952
++ ++R+ A L L ++ E + I ++ K + L +
Sbjct: 19 ATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALC 78
Query: 1953 SAGKSQLLSFMDEL-IPTIRTALCDSILEVRESAGLAFSTLFKS-AGMQAIDEIVPTLLH 2010
+ + EL +P L +A T+ + +G++ + P
Sbjct: 79 ENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKEL 138
Query: 2011 ALEDDQTSDTALDGLKQILSVRT----------TAVLPHILPKLVHLPLSAFNAHALGAL 2060
+++ DT L L ++ RT + ++ + L L
Sbjct: 139 CTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRL 198
Query: 2061 AEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120
+V ++ + + S+ + + + + + ++ + + L
Sbjct: 199 LDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLA 258
Query: 2121 VG--DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178
+A L G +++ + ++ ++ + + D A E L
Sbjct: 259 PDMESKVRVTVAITALLNGPLDVGNQVVARE---GILQMILAMATTDDELQQRVACECLI 315
Query: 2179 RVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL 2238
+ S K++ K L + +L
Sbjct: 316 ----------------------AASSKKDKAK-----------ALCEQGVDILKRLYH-- 340
Query: 2239 ISGSAELREQAALGLGEL---------IEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289
S + +R +A +GL +L I + + + LI+ D+ +
Sbjct: 341 -SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA 399
Query: 2290 SAILSTLSI--IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV 2347
+ L+ L++ ++ I K + L + + ++ L +
Sbjct: 400 ADGLAYLTLDAECKEKLIEDKASIHAL----MDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455
Query: 2348 DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHV 2407
+ L +++ + + I E + K ++ + + L L + +
Sbjct: 456 EMLP-EMIELAKFAKQHIPE---EHELDDVDFINKRITVLANEGITTALCALAKTESHNS 511
Query: 2408 RVSAASILGIMSQCMED-GQLADL--LQELLNLASSPSWAARHGSVLVFATFLRHNPSAI 2464
+ A +L + E G++ ++ LL +A + + + A +
Sbjct: 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571
Query: 2465 SMS--------PLFLSIL------------------------------------DRLKSS 2480
S S L++L +++
Sbjct: 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY 631
Query: 2481 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 2540
L ++ L A+ + L L++ + D + + D+ E AL
Sbjct: 632 LMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689
Query: 2541 KSVAKANPSA--IMVHVALFGPALAECLKDGSTPVRLAAERC 2580
+ + ++ +A + L + + S V+
Sbjct: 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 1626
N D L+ + +V R L +A + +AAQ++G V ++ + +G L ++
Sbjct: 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132
Query: 1627 VLVDPIPEVRSVAARAIGSLIRG--MGEENFPDL--VSWLLDALKSDNSNVERSGAAQGL 1682
+ D VR A AI L+R G F L S L+ A++ + + +A L
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL-KVKSAFLL 191
Query: 1683 SEVLA----ALGTVYFEHILPDIIRNCSHQRASVRD 1714
+L GT+ ++ ++ + + +
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 25/217 (11%)
Query: 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289
+ + + L +G+A LR +AA +G + + + + L+R++ V+
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142
Query: 2290 SAILSTLSIIIRKGGIALKPF-----LPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 2344
L +S ++R+ L F L ++ +Q + ++ +A L L
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVL----MRAMQQQVQKLKVKSAFLLQNLLVGH 198
Query: 2345 TRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 2398
+ L++ ++ + E +L AL ++ + V + + L++
Sbjct: 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEE 256
Query: 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELL 2435
L+ H +L + E+ + + L +
Sbjct: 257 LLRHRC--------QLLQQHEEYQEELEFCEKLLQTC 285
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-06
Identities = 47/268 (17%), Positives = 84/268 (31%), Gaps = 35/268 (13%)
Query: 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRI 2279
+ + LQ ++ S LR A + L L + + K + + G L+
Sbjct: 78 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQ 135
Query: 2280 IGDRFPWQVKSAILSTLSIIIR------KGGIALKPFLPQLQTTFIKCLQDSTR-TVRSS 2332
+ ++ I S L + K + + L ++C + + + S
Sbjct: 136 LKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL----MECALEVKKESTLKS 190
Query: 2333 AALALGKLSALSTR-----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381
AL LSA T + LVG L Q + I E+ L+ V
Sbjct: 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250
Query: 2382 KSVSSAVKIRVYSVLKDLV---YHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQEL 2434
+ +R + L+ L+ + +A L +S Q + L
Sbjct: 251 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310
Query: 2435 LNLASSPSWAARHGSVLVFATFLRHNPS 2462
NL S GS + + P+
Sbjct: 311 KNLIHSKHKMIAMGSAAALRNLMANRPA 338
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 32/150 (21%)
Query: 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
L P + + +R + L + + PL+ + +
Sbjct: 11 SSGLVPRG----SHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE 54
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343
W+++ A + G + + L IK L+D + VRS AA +L ++
Sbjct: 55 D-WRIRGAAAWII------GNFQDERAVEPL----IKLLEDDSGFVRSGAARSLEQIG-- 101
Query: 2344 STRVDPLVGDLLSSLQVSDAGIREAILTAL 2373
RV + L + R+ + L
Sbjct: 102 GERVRAAMEKLAET---GTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 16/98 (16%)
Query: 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 2378
++ L + +R +AA +G V+PL+ L+ +R +L +
Sbjct: 48 LESLSNEDWRIRGAAAWIIGNFQDERA-VEPLI----KLLEDDSGFVRSGAARSL-EQIG 101
Query: 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416
RV + ++ L R A + L
Sbjct: 102 GE----------RVRAAMEKLAETGTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 23/106 (21%)
Query: 2474 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVR 2533
+ L SL +E + +R A+ +G Q A V+ L + L DDS VR
Sbjct: 44 FEPLLESLSNEDWRIRGAAAWIIG-----NFQDERA-----VEPL---IKLLEDDSGFVR 90
Query: 2534 RRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579
A +L+ + A+ + + G+ R A
Sbjct: 91 SGAARSLEQI--GGERVR--------AAMEKLAETGTGFARKVAVN 126
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 64/180 (35%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
L + D VR + A+ MG+E F L+ ++L +++ + R AA
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSR----MGDEAFEPLL----ESLSNEDWRI-RGAAA- 63
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
++ ++ +
Sbjct: 64 ---WIIGNFQD--------------------------------------------ERAVE 76
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L D++ VR A + L + + E R+ +V L
Sbjct: 77 PLIKLLEDDSGFVRSGAARS---LEQIGGERVRAAMEKLAET----GTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 33/147 (22%)
Query: 2396 LKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFAT 2455
+ ++ VR ++ L M + + LL S+ W R + +
Sbjct: 17 RGSHMADENKWVRRDVSTALSRMGD--------EAFEPLLESLSNEDWRIRGAAAWIIGN 68
Query: 2456 FLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515
F + A+ + L L+D+ +R + ++L ++ V
Sbjct: 69 F--QDERAV----------EPLIKLLEDDSGFVRSGAARSLEQI----------GGERVR 106
Query: 2516 DILASVVSALHDDSSEVRRRALSALKS 2542
+ + R+ A++ L++
Sbjct: 107 AAM---EKLAETGTGFARKVAVNYLET 130
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 29/141 (20%)
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
+AD N RR+ A L R+ + LL + S++ +R AA
Sbjct: 17 RGSHMADENKWVRRD-VSTA-------LSRMGDEAF----EPLLESLSNEDWRIRGAA-- 62
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
A + + + L+K LED + + + + L + ++
Sbjct: 63 -AWI----IGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRA 107
Query: 1503 KLTEVLTDTHPKVQSAGQTAL 1523
+ ++ + L
Sbjct: 108 AMEKLAETGTGFARKVAVNYL 128
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 4e-05
Identities = 48/353 (13%), Positives = 114/353 (32%), Gaps = 42/353 (11%)
Query: 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142
+ VQ LA T+ + E L E+ K + + + +R+ +A + +
Sbjct: 116 LNHSTQFVQGLA---LCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172
Query: 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202
+ + LL++ + + + L+ + P ++ + K++ +
Sbjct: 173 VP----ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP-DMLAHFRKLVPQLVRI 227
Query: 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262
++ + G P +L L+ L + E L ++ T
Sbjct: 228 LKNLIMSGYS-PEHDVSGISDPFLQVRIL-RLLRILGRNDDDSSEAMNDILAQVATNTET 285
Query: 2263 QS------LKEFVIPITG------------PLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304
L E V+ I ++ ++ L++L ++
Sbjct: 286 SKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH 345
Query: 2305 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL--STRVDPLVGDLLSSLQVSD 2362
A++ ++T + CL+D +++ A+ AL + ++ +LL L +
Sbjct: 346 NAVQRH----RSTIVDCLKDLDVSIKR---RAMELSFALVNGNNIRGMMKELLYFLDSCE 398
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASIL 2415
+ + + A K S + ++ +VR A L
Sbjct: 399 PEFKADCASG---IFLAAEKYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNL 446
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-04
Identities = 42/251 (16%), Positives = 86/251 (34%), Gaps = 28/251 (11%)
Query: 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 2406
+ L + SS + D R + ALK + K V + VL+ D +
Sbjct: 23 IQKLCDRVASSTLLDD---RRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQT-DRSDSEI 78
Query: 2407 VRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 2466
+ + ++ I+S E+ + ++ +L F +
Sbjct: 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLG------------SQFTEIFIKQQENV-- 124
Query: 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526
L LS+L+ + F +R K L LL V ++ ++ L
Sbjct: 125 -TLLLSLLE-------EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176
Query: 2527 DDSSEVRRRALSALKSVAKANPS--AIMVHVALFGPALAECLKDGSTPVRLAAERCAVHA 2584
D +R + L+++ ++N + I+ F L ++G++ + E C +
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236
Query: 2585 FQLTRGSEYIQ 2595
L + + Q
Sbjct: 237 QNLLKNNNSNQ 247
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 38/254 (14%), Positives = 89/254 (35%), Gaps = 13/254 (5%)
Query: 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS---TRVDPLVGDLLSSLQ 2359
G I + L KCL+D VR +AA+ + KL ++ + L +
Sbjct: 111 GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA 170
Query: 2360 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419
S+ + + AL + + S + + + L + + ++ L +
Sbjct: 171 DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN 230
Query: 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479
+D + + + + S + A +V V FL P + L L
Sbjct: 231 P-KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV 289
Query: 2480 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSA 2539
+L + ++ + + + ++ + ++ V ++D V+ L
Sbjct: 290 TLLSGEPEVQYVALRNINLIVQKR--------PEILKQEIKVFFVKYNDPIYVKLEKLDI 341
Query: 2540 LKSVA-KANPSAIM 2552
+ +A +AN + ++
Sbjct: 342 MIRLASQANIAQVL 355
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-04
Identities = 47/250 (18%), Positives = 93/250 (37%), Gaps = 23/250 (9%)
Query: 2317 TFIKCLQDSTRTVRSSAALALGKLSALSTR--VDPLVGDLLSSLQVSDAGIR-EAILTAL 2373
+F+K +D +R ALA+ + + + L L L+ D +R A +
Sbjct: 90 SFVKDCEDPNPLIR---ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 146
Query: 2374 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL--- 2430
K + + V + L+DL+ + V +A + L +S+ + L DL
Sbjct: 147 K-LHDINAQMVEDQGFL---DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202
Query: 2431 -LQELLNLASSPS-WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPL 2488
+ +LL + + W G + + +NP SI +R+ L +
Sbjct: 203 NINKLLTALNECTEW----GQIFILDCLSNYNP---KDDREAQSICERVTPRLSHANSAV 255
Query: 2489 REASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548
++ K L L + +++ LA + L EV+ AL + + + P
Sbjct: 256 VLSAVKVL-MKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRP 314
Query: 2549 SAIMVHVALF 2558
+ + +F
Sbjct: 315 EILKQEIKVF 324
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2622 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.89 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.86 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.84 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.83 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.83 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.79 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.79 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.75 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.75 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.73 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.71 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.71 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.7 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.7 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.7 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.69 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.63 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.62 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.62 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.59 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.59 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.58 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.58 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.56 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.56 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.54 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.54 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.52 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.52 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.51 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.5 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.5 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.5 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.5 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.49 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.46 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.39 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.37 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.36 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.35 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.34 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.34 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.32 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.29 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.28 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.16 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.13 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.12 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 99.08 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.05 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.97 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.94 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.92 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.92 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.88 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.87 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.82 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.81 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.8 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.79 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.79 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.78 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.72 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.72 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.69 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.68 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.67 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.67 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.61 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.58 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.58 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.55 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.55 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.52 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.5 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.5 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.45 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.44 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.38 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.33 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.14 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.11 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.1 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.03 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.99 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.98 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.79 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.71 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.44 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.33 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.32 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 97.31 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.24 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.14 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 97.05 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.03 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 96.64 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.61 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 96.14 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 95.85 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 95.57 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 94.48 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 92.55 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 92.12 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 92.07 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 89.6 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 86.92 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 85.35 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 85.25 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 84.72 | |
| 3jxy_A | 232 | Alkylpurine DNA glycosylase ALKD; heat repeat, DNA | 82.87 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 82.77 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=592.18 Aligned_cols=1014 Identities=17% Similarity=0.186 Sum_probs=760.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~----l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
.-++.++..+.++++.+|..|...+...... +++...+.+++.+++.+.+++|.+|..|+.+|+.++...+. .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 3467788889999999999987776655431 22234578899999999999999999999999999987665 4
Q ss_pred hhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhh
Q 000050 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2622)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2622)
+++.+++.++..+.|+++.||.+|+.+|+.++..++.+.. +. ........
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~------------~~------------------~~~~~~~~ 132 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS------------GS------------------ALAANVCK 132 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----------------C------------------CTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc------------cc------------------chHHHHHH
Confidence 5688999999999999999999999999999877653210 00 00112345
Q ss_pred hHHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000050 1576 LLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2622)
Q Consensus 1576 ~i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~ 1654 (2622)
.++|.+.+.+.+ .++.+|..++.+++.++...+ +.+.||++.+++.+...+.++++.||..|+.+++.++...+++.
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~--~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 677888888874 778999999999999998654 47889999999999999999999999999999999999988888
Q ss_pred chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcch
Q 000050 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2622)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 1731 (2622)
++.+++.+++.+.++.....|..++++++.++...|.. +++.++|.+++.+.+.++.+|+.++.+++.++..+|..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 89999999999987654446778899999999988764 347889999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHhhcCCC-------------------------------------ChHHHHHHHHHHHHHHHHhhh---c
Q 000050 1732 QNYLQQVLPAILDGLADE-------------------------------------NESVRDAALGAGHVLVEHYAT---T 1771 (2622)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~-------------------------------------~~~VR~~al~al~~lv~~~~~---~ 1771 (2622)
.||++.++|.++..+.++ ...+|.+|..++..+....+. .
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 999999999999887521 013688888888887765543 2
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC-CCCcccHHHHHHHHHHHhChhhHHHHHHHHH
Q 000050 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS-DDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~-dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~ 1850 (2622)
.++.++|.+...+.|.++.+|..++..++.++...+...+ ...+.. -....+. ...+. ...+.+++.+.
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~-----~~l~~ll~~l~ 440 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQS--WLCDPDAMEQGETP---LTMLQ-----SQVPNIVKALH 440 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--------------CCCH---HHHHH-----HHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccc--cccCccccccccch---HHHHH-----HHhhHHHHHHH
Confidence 4556778888888888888999999998888766532110 000000 0000000 01111 12345666666
Q ss_pred HhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhccc----hhhhH
Q 000050 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS--ERRQVAGRALGELVRKLGER----VLPSI 1924 (2622)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~--~~R~~A~~~L~~lv~~~~~~----~l~~l 1924 (2622)
..+.|.++.+|..++..++.++...+..+.++++.+++.+...+.+++. .+|..++..++.++...|.. +++.+
T Consensus 441 ~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~l 520 (1230)
T 1u6g_C 441 KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 520 (1230)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHH
Confidence 6688999999999999999999988877888999999999999998764 89999999999998877665 56789
Q ss_pred HHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh------hhHHHhHHhHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHh
Q 000050 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKSA 1996 (2622)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~d~~VR~~A~~al~~l~~~~ 1996 (2622)
+|.+...+.|+++.+|..++.+++.++...+. ..+.+|++.++|.+...+ .|.++++|..|..+++.+....
T Consensus 521 lp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 521 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998877654 367789999999999999 7889999999999999999988
Q ss_pred Chhh---hhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHH-hCCChhhhH
Q 000050 1997 GMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGPGLNFHL 2072 (2622)
Q Consensus 1997 g~~~---~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~-~g~~l~~~l 2072 (2622)
|... +..++|.|.+.+.++..+..++.+ ++.++.. .+.++.+++
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~a--------------------------------l~~i~~~~~~~~~~~~~ 648 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKA--------------------------------LTLIAGSPLKIDLRPVL 648 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTSSSHHHHHHHH--------------------------------HHHHTTCSSCCCCHHHH
T ss_pred CchhhhhHHHHHHHHHHHhccchhHHHHHHH--------------------------------HHHHHhCccccchHHHH
Confidence 8643 344455555555544433333333 3333321 123578999
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh----hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccccc
Q 000050 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2622)
Q Consensus 2073 ~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~ 2148 (2622)
+.++|.+.+.+.++++.+|..+..+++.++...+. +.+.+++..++..+.++|+.++..+..++..+++..+..+.
T Consensus 649 ~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~ 728 (1230)
T 1u6g_C 649 GEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 728 (1230)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHH
Confidence 99999999999999999999999999999987753 34555555555667788899999999999999987777777
Q ss_pred ccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCch
Q 000050 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2622)
Q Consensus 2149 ~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~ 2228 (2622)
++.+.+++.++..+.++. +...+..++..+.+.. .. . + ++ +....
T Consensus 729 ~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l---------------~~-~---------~-----~~---~~~~~ 773 (1230)
T 1u6g_C 729 KISGSILNELIGLVRSPL--LQGGALSAMLDFFQAL---------------VV-T---------G-----TN---NLGYM 773 (1230)
T ss_dssp GTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHH---------------HT-T---------C-----CT---TCSHH
T ss_pred HhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHH---------------Hh-c---------C-----CC---CCCHH
Confidence 778888888888886543 1112222222222110 00 0 0 00 11223
Q ss_pred hhHHHHHHHHcc-----CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcC-CCCHhhHHHHHHHHHHHHHh
Q 000050 2229 PLLPIFLQGLIS-----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRK 2302 (2622)
Q Consensus 2229 ~ilp~ll~~L~~-----~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~~ 2302 (2622)
.+++.+.+.+.. .....+..++.+++.++..+++ .....+..+ +..+.+ ......+..++.+++.++..
T Consensus 774 ~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~g~~ 848 (1230)
T 1u6g_C 774 DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK-EGPAVVGQF----IQDVKNSRSTDSIRLLALLSLGEVGHH 848 (1230)
T ss_dssp HHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC-CSHHHHTTT----TTTTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcch-hhHHHHHHH----HHHhCCCCccHHHHHHHHHHHHHhccc
Confidence 333333322221 1234577889999999988873 233333332 333332 13566788888999988775
Q ss_pred cCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCC
Q 000050 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382 (2622)
Q Consensus 2303 ~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2622)
.+ +.+ .|++++++++++.|+++.||.+|+.+||.++. ++++.++|.+++.+.+. ++.|+.++++|++++...+.
T Consensus 849 ~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~--~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~ 922 (1230)
T 1u6g_C 849 ID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASV 922 (1230)
T ss_dssp SC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCS
T ss_pred CC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc--cCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCCh
Confidence 43 344 48899999999999999999999999999975 56778999999999754 67799999999999998776
Q ss_pred CCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCc
Q 000050 2383 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462 (2622)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~ 2462 (2622)
....++...|++.|...+.+.++++|..+++|+|.++...++ ++++.
T Consensus 923 ~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~----~l~p~----------------------------- 969 (1230)
T 1u6g_C 923 VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE----TLLPR----------------------------- 969 (1230)
T ss_dssp TTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG----GTHHH-----------------------------
T ss_pred hhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH----HHHHH-----------------------------
Confidence 666899999999999999888889999999999999977543 12222
Q ss_pred cccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000050 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKS 2542 (2622)
Q Consensus 2463 ~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~ 2542 (2622)
+.+.+.++++.+|..++.++++++..+. +....++..+++.++.+++|++.+||++|+.++++
T Consensus 970 --------------l~~~l~~~~~~~R~~~~~~l~~~~~~~~---~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~ 1032 (1230)
T 1u6g_C 970 --------------LKGYLISGSSYARSSVVTAVKFTISDHP---QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1032 (1230)
T ss_dssp --------------HTTTSSSSCHHHHHHHHHHTGGGCCSSC---CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHH
T ss_pred --------------HHHHhcCCCHHHHHHHHHHHHHHHccCc---hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2233344455566666666665554432 22234667788888899999999999999999999
Q ss_pred HHhhCchhhhhhHhhHHHHHHhhhcCC------------------cchhhchhHHHHHHHhcccccc-hhHHHHHHHhhc
Q 000050 2543 VAKANPSAIMVHVALFGPALAECLKDG------------------STPVRLAAERCAVHAFQLTRGS-EYIQGAQKFITG 2603 (2622)
Q Consensus 2543 ~a~~~~~~v~~~l~~l~p~l~~~~~~~------------------~~~vk~aae~a~~~~~~~~~~~-~~~~~~~~~l~~ 2603 (2622)
+++++|+.+.++++.++|.||+.++.+ +..+|.+|..|+..+++.+.+. +-.+.+..|+.|
T Consensus 1033 ~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~g 1112 (1230)
T 1u6g_C 1033 AAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDG 1112 (1230)
T ss_dssp HHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHT
T ss_pred HHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence 999999999999999999999998644 4489999999999999987543 235677789888
Q ss_pred hhh
Q 000050 2604 LDA 2606 (2622)
Q Consensus 2604 ~~~ 2606 (2622)
++-
T Consensus 1113 l~d 1115 (1230)
T 1u6g_C 1113 LKD 1115 (1230)
T ss_dssp TSS
T ss_pred cCc
Confidence 873
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-49 Score=589.33 Aligned_cols=1089 Identities=17% Similarity=0.181 Sum_probs=793.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccc--hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS--LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~--l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~ 1415 (2622)
.+..+++.+.+ .|...|..|...|....+...... .....+++.+.+.+.++ +|.+|.+|+.+++.+++.++.
T Consensus 7 ~l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 7 HISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH---
Confidence 45566666543 456778888777766554321111 11225778888888876 899999999999999987764
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---------hHHhhHHHHHhhcc-CCChhhHHHHHHHHHHH
Q 000050 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---------GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAM 1485 (2622)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---------~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~l 1485 (2622)
+++..+++.++..+.|+++.||.++..+++.++..+++. .+..++|.+++.+. +++|.+|.+++.+++.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999988765 47899999999998 58899999999999999
Q ss_pred HhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCC-hhHH-HHHHHHHhc
Q 000050 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK-YSLDILLQT 1563 (2622)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~-~~~r-~al~~L~~~ 1563 (2622)
+...+..+.++++.+++.++..+.|+++.||..|+.+++.++...++..+..++|.++..+.+++ ..+| .+++.+...
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 98888888888999999999999999999999999999999998876666777888877775432 2233 334433321
Q ss_pred -cccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-------------
Q 000050 1564 -TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV------------- 1629 (2622)
Q Consensus 1564 -~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~------------- 1629 (2622)
......-.+.+..++|.+...+.|.++++|..+..+++.++...+ +++.||++.++|.+...+.
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP--KEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh--HHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 111112235677899999999999999999999999999998654 4788999999999877663
Q ss_pred ------------------------CCCHHHHHHHHHHHHHHHhhhCC---CCchhhHHHHHHHhhhcCChHHHHHHHHHH
Q 000050 1630 ------------------------DPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682 (2622)
Q Consensus 1630 ------------------------d~~~~vR~~a~~aL~~L~~~~g~---~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L 1682 (2622)
|..|.+|..|+.+++.++...|+ .+++.++|.+...+.+. ...+|..++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l 398 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKER-EENVKADVFHAY 398 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCS-SSHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence 12467899999999999987664 25677788877776544 356898999999
Q ss_pred HHHHHHhch------------------h----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1683 SEVLAALGT------------------V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1683 ~~i~~~~g~------------------~----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
+.++...|. . .++.++|.+.+.+.+.++.+|.+++.+++.++..++..+.+|++.++|
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~ 478 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP 478 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHH
Confidence 888876642 1 234556666666899999999999999999999988888999999999
Q ss_pred HHHhhcCCCCh--HHHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000050 1741 AILDGLADENE--SVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1814 (2622)
Q Consensus 1741 ~ll~~L~d~~~--~VR~~al~al~~lv~~~~~~----~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~ 1814 (2622)
.++..+.|... .+|..++.++..++..++.+ .++.++|.+...+.|.+|++|..++..++.++..++....
T Consensus 479 ~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~--- 555 (1230)
T 1u6g_C 479 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ--- 555 (1230)
T ss_dssp HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS---
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc---
Confidence 99999999865 89999999998888766655 4667899999999999999999999999998866542100
Q ss_pred ccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHH
Q 000050 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2622)
Q Consensus 1815 ~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~ 1892 (2622)
...... ..+.+.+++.+...+ .|.+..+|..|+.+++.++...+..+.++++.+++.+..
T Consensus 556 ----~~~~~~--------------~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~ 617 (1230)
T 1u6g_C 556 ----PSSFDA--------------TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLE 617 (1230)
T ss_dssp ----CCCCCC--------------HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHH
T ss_pred ----ccccch--------------HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHH
Confidence 000000 023345666665555 788999999999999999999988888899999999998
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhc----cchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHH
Q 000050 1893 SLASSSSERRQVAGRALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968 (2622)
Q Consensus 1893 ~L~s~~~~~R~~A~~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~ 1968 (2622)
.+.+. ..|..+..+++.++...+ ..+.+.++|.+...+.++++.+|.+++.+++.++...+.....+++..++.
T Consensus 618 ~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~ 695 (1230)
T 1u6g_C 618 RLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD 695 (1230)
T ss_dssp HTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT
T ss_pred Hhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 88754 478889999998875432 235788999999999999999999999999999887764333334444444
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhh
Q 000050 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045 (2622)
Q Consensus 1969 ~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~ 2045 (2622)
.+...+.+.|.+++..+..++..+++..+.. ..+.++|.++..+++...++.+++++..++.
T Consensus 696 ~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~--------------- 760 (1230)
T 1u6g_C 696 ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ--------------- 760 (1230)
T ss_dssp TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHH---------------
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHH---------------
Confidence 4445567888999999999999887655432 2456677777666654433333333322221
Q ss_pred cCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC-----CCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhh
Q 000050 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2622)
Q Consensus 2046 ~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~-----~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~ 2120 (2622)
.+... +.. .+.+..+++.++..+.. .++..+..+..+++.++...++.. ..+++.+...
T Consensus 761 -------------~l~~~-~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~~~~ 824 (1230)
T 1u6g_C 761 -------------ALVVT-GTN-NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG-PAVVGQFIQD 824 (1230)
T ss_dssp -------------HHHTT-CCT-TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-HHHHTTTTTT
T ss_pred -------------HHHhc-CCC-CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh-HHHHHHHHHH
Confidence 11110 110 23556666666655432 234567778888888887665433 2677777777
Q ss_pred cCC--CChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHH
Q 000050 2121 VGD--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2622)
Q Consensus 2121 l~d--~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2622)
+++ .+...+..++.+++.+... .++.+ .+++.+.++..+.|+++.||.+|+.||+.++..
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~--~~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~--------------- 886 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHH--IDLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVG--------------- 886 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHH--SCCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH---------------
T ss_pred hCCCCccHHHHHHHHHHHHHhccc--CCCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhcc---------------
Confidence 765 4567788888888887653 23444 367889999999999999999999999998631
Q ss_pred HHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHH
Q 000050 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2622)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~ 2278 (2622)
++..++|.+++++.++ ++.|...+.+|..++...+.+.+.||+.+|++.|
T Consensus 887 ---------------------------~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L-- 936 (1230)
T 1u6g_C 887 ---------------------------NLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALL-- 936 (1230)
T ss_dssp ---------------------------THHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHH--
T ss_pred ---------------------------CHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHH--
Confidence 1234567777777654 5567777788888776554444555555444444
Q ss_pred hhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhh
Q 000050 2279 IIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL 2358 (2622)
Q Consensus 2279 ~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l 2358 (2622)
++.+.+.++.+|..++.|||.+....+ +.++|.+.+.+
T Consensus 937 ----------------------------------------~~~~~~~~~~~r~~~a~~lg~l~~~~~--~~l~p~l~~~l 974 (1230)
T 1u6g_C 937 ----------------------------------------LKHCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGYL 974 (1230)
T ss_dssp ----------------------------------------TTCCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTTS
T ss_pred ----------------------------------------HHHhcCcchhhHHHHHHHHhhhhccCh--HHHHHHHHHHh
Confidence 444444455677777777777765443 56777777777
Q ss_pred hcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---HHHHHHHHHH
Q 000050 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELL 2435 (2622)
Q Consensus 2359 ~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll 2435 (2622)
+++++.+|..++.+++.++...+... .++.+.++..+...+.|++..+|.++..+++.+++..|+. .+..+++.+.
T Consensus 975 ~~~~~~~R~~~~~~l~~~~~~~~~~~-~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 975 ISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp SSSCHHHHHHHHHHTGGGCCSSCCTH-HHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccCchhh-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 77777788888888877776666554 4567777777778889999999999999999999887752 2333333333
Q ss_pred hhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhH
Q 000050 2436 NLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515 (2622)
Q Consensus 2436 ~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~ 2515 (2622)
+.....+...| ....+ -++|..+++.++|++|+.|+++++.++.+. -.+.
T Consensus 1054 ~~~~~~~~~~~-----------------~v~~g--------p~k~~vd~~l~~rk~a~~~~~~ll~~~~~~-----i~~~ 1103 (1230)
T 1u6g_C 1054 NETKVRKELIR-----------------EVEMG--------PFKHTVDDGLDIRKAAFECMYTLLDSCLDR-----LDIF 1103 (1230)
T ss_dssp HTTSCCGGGEE-----------------EEEET--------TEEEEEETHHHHHHHHHHHHHHHHHSSCSS-----SCHH
T ss_pred HHhcccHHhhe-----------------eeccC--------CcccccCCcHHHHHHHHHHHHHHHHHHHHh-----CCHH
Confidence 32111111000 00010 135667788899999999999999997543 2478
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcC--Ccchh----------hchhHHHHHH
Q 000050 2516 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTPV----------RLAAERCAVH 2583 (2622)
Q Consensus 2516 ~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~--~~~~v----------k~aae~a~~~ 2583 (2622)
++++.++.++.|+ .|+|..+..+|..++..+|..+.++++.+++++.+.+.. +...| ++++.||+.+
T Consensus 1104 ~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~ 1182 (1230)
T 1u6g_C 1104 EFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAA 1182 (1230)
T ss_dssp HHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999995 899999999999999999999999999999999997533 34444 5566699999
Q ss_pred HhcccccchhHHHHHHHhhchhhhhhccCCCcc
Q 000050 2584 AFQLTRGSEYIQGAQKFITGLDARRLSKFPEHR 2616 (2622)
Q Consensus 2584 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 2616 (2622)
+.++++.+ ..+.|.+|+ +++.++|++.
T Consensus 1183 l~~~~~~~-~~~~~~~~~-----~~~~~~~~~~ 1209 (1230)
T 1u6g_C 1183 LLTIPEAE-KSPLMSEFQ-----SQISSNPELA 1209 (1230)
T ss_dssp TTSSCSCS-SSSSCCCCC-----HHHHHHHHHT
T ss_pred HHhCCCcc-cChHHHHHH-----HHHHhCHHHH
Confidence 99888754 334455555 4455555443
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=410.29 Aligned_cols=742 Identities=13% Similarity=0.152 Sum_probs=569.5
Q ss_pred hHhHHHHh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh---
Q 000050 1132 YSGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD--- 1206 (2622)
Q Consensus 1132 ~~~Ll~~l-~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~--- 1206 (2622)
+..++... .++|..+|+.|.+.|..+.+. .|+.+..++..+.+ . ..+.++|..++..|+....
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-------~-----~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID-------E-----NTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-------T-----TSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC-------C-----CCChHHHHHHHHHHHhhccCcC
Confidence 35667777 889999999999999886654 24444444333321 0 1245789998888887642
Q ss_pred ------------h-hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHhcCCCCChhh
Q 000050 1207 ------------V-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEK 1272 (2622)
Q Consensus 1207 ------------~-~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~-~~~~~llp~~~~~l~~~~~~~~~ 1272 (2622)
. ++++....+...++ .++.+.++.||..+..++..+....+. ..|+.++|.+.+.+... .
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-----~ 147 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-----Q 147 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-----S
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-----C
Confidence 1 44444445666665 567888999999999999888887655 48999999999888652 1
Q ss_pred hhhhhhHHHHHHHHHhhhhccC----CcchHHHHHHHHHHcCCC--CHHHHHHHHhhhHhhHhhhccch------HHHHH
Q 000050 1273 YDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA------PTLVS 1340 (2622)
Q Consensus 1273 ~~~vr~~~~~~~~~la~~l~~~----~~~v~~i~~~L~~~l~~~--~~~Vq~~a~~~L~~lv~~~~~~~------~~~i~ 1340 (2622)
+..+|+.++..++.+.+.+... .+....+++.+...+.++ +++||.++.+|+..++....... ..+++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 3467889999999998766433 456788999999999998 89999999999998765543221 22444
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchh-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-------
Q 000050 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------- 1411 (2622)
Q Consensus 1341 ~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~------- 1411 (2622)
.+.+ +..++++..|..+..+|..++...+..... .. .+++.+...+.+. +..+|..++..+..+++...
T Consensus 228 ~l~~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 228 VVCE-ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHH-HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4443 345667899999999999999877643221 11 5677777777776 78999999999999887632
Q ss_pred ----------ccchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhh
Q 000050 1412 ----------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1412 ----------~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
..+.+++..++|.++..+.+ .+..+|.++..++..++..+++..+..++|.+.+.+.+++|+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhH
Confidence 23456778899999999874 3458999999999999998887777889999999999999999
Q ss_pred HHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhH
Q 000050 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT 1553 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~ 1553 (2622)
|.+++.+++.++.++. +.+..+++.++|.+...+.|+++.||.++++++++++..++...
T Consensus 386 r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------------------- 446 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI------------------- 446 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS-------------------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc-------------------
Confidence 9999999999998764 77888899999999999999999999999999999987654200
Q ss_pred HHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCC--CCcccchHhhhHHHHHHHhcC-
Q 000050 1554 KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVD- 1630 (2622)
Q Consensus 1554 r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~d- 1630 (2622)
...+.+..++|.+...+.+. +++|..++.++++++...++ +..+.||++.+++.+...+.+
T Consensus 447 ---------------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 447 ---------------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp ---------------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred ---------------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 01123345666677777665 88999999999999987652 356889999999999999984
Q ss_pred -CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhc--------------CChHHHHHHHHHHHHHHHHhchh
Q 000050 1631 -PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV 1692 (2622)
Q Consensus 1631 -~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~--------------~~~~~r~~a~~~L~~i~~~~g~~ 1692 (2622)
.++.+|..++.+++.++...|++ ++..++|.+++.+... .....|..++.+++.++..+|..
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44899999999999999998865 4567777777776532 12235667888899999988874
Q ss_pred ---HHHhHhHHHHHhccCCCh-hhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000050 1693 ---YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2622)
Q Consensus 1693 ---~l~~llp~l~~~l~~~~~-~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~ 1768 (2622)
+.+.+++.++..+.+.++ .+|+.++.+++.++..+|..|.||++.++|.++..+.+++..+|..+..++..++...
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 457788888888887777 8999999999999999999999999999999999998877788888777776665544
Q ss_pred hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHH
Q 000050 1769 ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2622)
Q Consensus 1769 ~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~ 1848 (2622)
+.. +.| +.+.+++.
T Consensus 671 ~~~----~~~--------------------------------------------------------------~~~~l~~~ 684 (861)
T 2bpt_A 671 EED----FRR--------------------------------------------------------------YSDAMMNV 684 (861)
T ss_dssp GGG----GHH--------------------------------------------------------------HHHHHHHH
T ss_pred chh----ccc--------------------------------------------------------------hHHHHHHH
Confidence 321 000 11122223
Q ss_pred HHHhccCC--CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHH
Q 000050 1849 LYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRK 1915 (2622)
Q Consensus 1849 L~~~~~D~--~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~-----------~~~R~~A~~~L~~lv~~ 1915 (2622)
++..+.+. +..+|..++.+++.++...+..+.+|++.+++.+...+.... ..+|..+..+++.++..
T Consensus 685 l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 685 LAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 367999999999999999899999999999999999887432 45789999999999988
Q ss_pred hcc---c---hhhhHHHHHhhhcCCC----ChhhHHhHHHHHHHHHHhhChhhHHHhHH-hHHHHHHHHhc---CCcHHH
Q 000050 1916 LGE---R---VLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEV 1981 (2622)
Q Consensus 1916 ~~~---~---~l~~llp~L~~~L~d~----~~~vR~~a~~~L~~li~~~~~~~l~~~l~-~ll~~l~~~L~---d~d~~V 1981 (2622)
+|. . +.+.+++.+...+.|. +..+|..++.+++.++...++..+.+|++ .+++.+.+.+. +.+.++
T Consensus 765 l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 844 (861)
T 2bpt_A 765 LHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQAT 844 (861)
T ss_dssp TTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHH
Confidence 872 2 3566777777777664 88999999999999998884556777888 88888888765 567899
Q ss_pred HHHHHHHHHHHHH
Q 000050 1982 RESAGLAFSTLFK 1994 (2622)
Q Consensus 1982 R~~A~~al~~l~~ 1994 (2622)
++.|..+.+.+.+
T Consensus 845 ~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 845 KDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=400.97 Aligned_cols=727 Identities=15% Similarity=0.187 Sum_probs=557.2
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-h---
Q 000050 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-L--- 1208 (2622)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~--- 1208 (2622)
..++....++|..+|+.|.+.+..+ ...|+.+..+...+... . +.+..+|..++..|+..... +
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il~~~-----~------~~~~~vR~~a~~~Lkn~i~~~w~~~ 83 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLTKL-----K------SEDEPTRSLSGLILKNNVKAHFQNF 83 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTC-----T------TSCHHHHHHHHHHHHHHTTTSGGGC
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHhcc-----C------CCChHHHHHHHHHHHHHHHHccCCC
Confidence 4455555689999999999998654 44555444443333210 1 23458999999999877642 2
Q ss_pred CCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHh
Q 000050 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2622)
Q Consensus 1209 ~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la 1288 (2622)
+++....+.+.++ .+++|+++.||..+..++..+++..+.+.|++++|.+.+.+... +..+|++++..++.+.
T Consensus 84 ~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~------~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 84 PNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE------DYNTCEGAFGALQKIC 156 (852)
T ss_dssp CHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS------SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHH
Confidence 2222334555554 67899999999999999999988878889999999999988752 2467889998888888
Q ss_pred hhhccC------CcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc----chHHHHHHHHHHHhcCCChHHHHHH
Q 000050 1289 KHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD----EAPTLVSRLLDQLMKSDKYGERRGA 1358 (2622)
Q Consensus 1289 ~~l~~~------~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~----~~~~~i~~Ll~~L~~~~~~~~r~~A 1358 (2622)
+..... ...+..+++.+++.+++++++||..+.+++..++..... ..+.+++.++..+. +++..+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a 235 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-DEEPEVRKNV 235 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 654321 234778899999999999999999999999887754332 23456666666543 4567899999
Q ss_pred HHHHHHHHhhhCccchh-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHc------
Q 000050 1359 AFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF------ 1429 (2622)
Q Consensus 1359 a~~L~~l~~~lg~~~l~-~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~--~~~~~~~~v~~ilp~ll~~l------ 1429 (2622)
+.+|..++...+..... -..+++.+.+.+.+. ++.+|..|+..+..+++. ..+.+.||+..++|.++..+
T Consensus 236 ~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d 314 (852)
T 4fdd_A 236 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 314 (852)
T ss_dssp HHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhH
Confidence 99999999865422111 125788888888876 789999999988888763 23446789999999999988
Q ss_pred -----CC-----------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh
Q 000050 1430 -----SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2622)
Q Consensus 1430 -----~D-----------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2622)
+| .+..||.++..+++.++...++..+..++|.+.+.+.+++|+.|.+++.+++.++.++++.+
T Consensus 315 ~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp HHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 45 33468999999999999988877778899999999999999999999999999999998888
Q ss_pred hhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhh
Q 000050 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2622)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~ 1573 (2622)
..+++.++|.+...++|+++.||.+|+++++.+++.++.. ...+.
T Consensus 395 ~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------------------------------~~~~~ 439 (852)
T 4fdd_A 395 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ-----------------------------------PPDTY 439 (852)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS-----------------------------------CTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc-----------------------------------hHHHH
Confidence 8999999999999999999999999999999998754310 01123
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000050 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1574 l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
+..+++.+.+.+.|.++.+|..|+.+++++++..+. .+.||++.+++.+...+.+........+..+++.++...|+.
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~--~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH--hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 345677777788888899999999999999987653 689999999999999999887788888999999999888754
Q ss_pred -----CchhhHHHHHHH---hhhcCChHHHHHHHHHHHHHHHHhchhH---HHhHhHHHHHhcc----------------
Q 000050 1654 -----NFPDLVSWLLDA---LKSDNSNVERSGAAQGLSEVLAALGTVY---FEHILPDIIRNCS---------------- 1706 (2622)
Q Consensus 1654 -----~~~~ll~~Ll~~---L~~~~~~~~r~~a~~~L~~i~~~~g~~~---l~~llp~l~~~l~---------------- 1706 (2622)
+++.++|.+++. +.++... .+ .+..+++.++..+|... ++.+++.++..+.
T Consensus 518 ~~~~~~~~~l~p~l~~~~~~l~d~~~~-~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 518 LNKPEYIQMLMPPLIQKWNMLKDEDKD-LF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp GCCHHHHHHHHHHHHHHHHHSCTTCTT-HH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hccHHHHHHHHHHHHHHHHhcccccHH-HH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 566777777743 3333333 33 67888999999888753 3455554443321
Q ss_pred -CCChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc---hhhhhHHHH
Q 000050 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAV 1780 (2622)
Q Consensus 1707 -~~~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~---~i~~llp~l 1780 (2622)
.++..++..++.+++.++..+|.+|.+|+ +.+++.++.++.|+..+||..+..+++.+...++.. .++.++|.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12567889999999999999999999998 789999999999999999999999999999877754 456789999
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc--CCCH
Q 000050 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSL 1858 (2622)
Q Consensus 1781 ~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~--D~~~ 1858 (2622)
.+.+.+++..+|..++..+|.+...++.. + .++...+++.++..+. +...
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~~-----------------------~-----~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGIE-----------------------M-----QPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGGG-----------------------G-----GGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhHh-----------------------H-----HHHHHHHHHHHHHHhCCCCCCc
Confidence 99998888899999999999987654210 0 0123345555555443 3466
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhh--cCCC
Q 000050 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILSRG--LKDP 1935 (2622)
Q Consensus 1859 ~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s-~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~--L~d~ 1935 (2622)
.+++.|+.+++.+....|..+.++++.+++..+..+.. .+.+.|..+.++++.++..-+....+.+..++... ..++
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~ 807 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 807 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999998899999999999999974 56678999999999999987776666665443332 3345
Q ss_pred ChhhHHhHHHHH
Q 000050 1936 SASRRQGVCIGL 1947 (2622)
Q Consensus 1936 ~~~vR~~a~~~L 1947 (2622)
.++.+......|
T Consensus 808 ~~~l~~~~~~~l 819 (852)
T 4fdd_A 808 KDDLRDMFCKIL 819 (852)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555444433
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=388.87 Aligned_cols=751 Identities=12% Similarity=0.121 Sum_probs=562.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCC--ChhHHH-HHHHHHhccc--------------ccc-CC
Q 000050 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQTTF--------------VNT-VD 1570 (2622)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~--~~~~r~-al~~L~~~~~--------------~~~-~~ 1570 (2622)
.++++.+|..|.+.|..+.+. ....+.+.+...+.+. +..+|. |...+-. .+ ... +.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~-~i~~~w~~~~~~~~~~~~~~l~ 89 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTLKN-ELVSKDSVKTQQFAQRWITQVS 89 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHT-TTCCSSHHHHHHHHHHHHHHSC
T ss_pred cCcCHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHh-hccCcChHHHHHHHHhHhhhCC
Confidence 567889999999999887542 1234555666666543 456673 3333322 11 111 45
Q ss_pred hhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh
Q 000050 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1571 ~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~-~~~vR~~a~~aL~~L~~~ 1649 (2622)
+.....+.+.+...+.+.+..+|..++.+++.++.... + ...++.+++.+.+.+.++ ++.+|..+..+++.+.+.
T Consensus 90 ~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~-p---~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~ 165 (861)
T 2bpt_A 90 PEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL-P---HGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCES 165 (861)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-G---GTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC-c---ccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 55566777888888989899999999999999887521 1 114678999999999988 999999999999999997
Q ss_pred hCCC------CchhhHHHHHHHhhhcC-ChHHHHHHHHHHHHHHHHhchh-----HHHhHhHHHHHhccCCChhhHHHHH
Q 000050 1650 MGEE------NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYL 1717 (2622)
Q Consensus 1650 ~g~~------~~~~ll~~Ll~~L~~~~-~~~~r~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~al 1717 (2622)
++++ +.+.+++.+...+.+.+ +..+|..++.+++.++..++.. ....+++.+.+.+.+.++.+|..++
T Consensus 166 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~ 245 (861)
T 2bpt_A 166 ADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAF 245 (861)
T ss_dssp SSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7654 45567777777776652 5668888888888765433321 1245677777778889999999999
Q ss_pred HHHHHhhhhhCcchhhhHH-hHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh--------------------hchhhhh
Q 000050 1718 TLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYA--------------------TTSLPLL 1776 (2622)
Q Consensus 1718 ~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~--------------------~~~i~~l 1776 (2622)
.++..++...+..|.+|+. .+++.+...+.|.++.+|..++..+..++.... ...+..+
T Consensus 246 ~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 325 (861)
T 2bpt_A 246 GCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDV 325 (861)
T ss_dssp HHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999988876531 1123446
Q ss_pred HHHHhhccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHH
Q 000050 1777 LPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2622)
Q Consensus 1777 lp~l~~~l~-------d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L 1849 (2622)
+|.+...+. |++|.+|..+.+.++.+... +|.+....+++.+
T Consensus 326 l~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-------------------------------~~~~~~~~l~~~l 374 (861)
T 2bpt_A 326 VPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-------------------------------CGNHILEPVLEFV 374 (861)
T ss_dssp HHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-------------------------------HGGGGHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-------------------------------ccHhHHHHHHHHH
Confidence 666655543 34577777777777766433 2222334455555
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-----chhhh
Q 000050 1850 YMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-----RVLPS 1923 (2622)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~l~~~~p-~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~-----~~l~~ 1923 (2622)
...+.+.++.+|++|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..++.+++.++...+. ..++.
T Consensus 375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 556678899999999999999998764 778889999999999999999999999999999999998764 35788
Q ss_pred HHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC---hhhHHHhHHhHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCh
Q 000050 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAG---KSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~---~~~l~~~l~~ll~~l~~~L~--d~d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
++|.+...+.++ +.+|..+|.+++.++..++ +..+.+|++.+++.+...+. |.++.+|..+..+++.+....|.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 999999999886 9999999999999988765 35677899999999999997 44588999999999999988775
Q ss_pred h---hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhh
Q 000050 1999 Q---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTI 2075 (2622)
Q Consensus 1999 ~---~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~i 2075 (2622)
. .+..++|.+++.+.+... .. ..++..- ..-....+......+++.+....|..+.+|++.+
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~-------------~~-~~i~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l 598 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMS-------------VD-ENQLTLE-DAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTT-------------SC-GGGCCHH-HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHh-------------hh-cccCChh-hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3 234555655555432100 00 0000000 0000000112345677888888888899999999
Q ss_pred HHHHHHhcCCCCH-HHHHHHHHHHHHhhhccCh---hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH
Q 000050 2076 LPALLSAMGDDDM-DVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2622)
Q Consensus 2076 l~~Ll~~l~~~~~-~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~ 2151 (2622)
++.++..+.+.+. .+|+.+..+++.++...+. .++..+++.+...++++++.+|..++.+++.+++..+..+.+|+
T Consensus 599 ~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 678 (861)
T 2bpt_A 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS 678 (861)
T ss_dssp HHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH
T ss_pred HHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH
Confidence 9999999977766 8999999999988877654 45788999999999888899999999999999998888899999
Q ss_pred HHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccc---hhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcC
Q 000050 2152 PNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKA 2226 (2622)
Q Consensus 2152 ~~il~~L~~~l~d~d--~~V~~~a~~aL~~l~~~~~~~~---l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~ 2226 (2622)
+.+++.++..+++++ .++|..+..+++.++...+... ++.+++.+.+.+.... +. +
T Consensus 679 ~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---------------~~----~ 739 (861)
T 2bpt_A 679 DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---------------EN----G 739 (861)
T ss_dssp HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---------------SS----S
T ss_pred HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC---------------CC----C
Confidence 999999999998764 8899999999999988765533 2333333333221100 00 0
Q ss_pred chhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcC--hhhhhhhhhhhhHHHHHhhcCC--C-CHhhHHHHHHHHHHHHH
Q 000050 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIGDR--F-PWQVKSAILSTLSIIIR 2301 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~--~~~l~p~v~~i~~~Li~~l~~~--~-~~~vk~~al~~L~~L~~ 2301 (2622)
..-.. .....+|..++.+++.++...+ +..+.+|+..++..+.+.+.+. . ++.+|.+++.+++.++.
T Consensus 740 -d~d~~-------~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 740 -TLEAL-------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp -SHHHH-------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred -ChHHH-------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 00000 0013578899999999998876 3579999999999998888663 1 78899999999999999
Q ss_pred hc-CCCccCchH-HHHHHHHHHhCC---CCHHHHHHHHHHHHHHHh
Q 000050 2302 KG-GIALKPFLP-QLQTTFIKCLQD---STRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2302 ~~-~~~l~p~l~-~L~~~llk~L~d---~~~~vR~~Aa~aLg~L~~ 2342 (2622)
.. |..+.+|++ ++.+.+++.+.. .+..++..|.+|+|.+..
T Consensus 812 ~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 812 MFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 99 889999999 999999998873 478899999999998753
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=390.66 Aligned_cols=707 Identities=15% Similarity=0.175 Sum_probs=538.5
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhc---cccccCChhhhhhHHHHHHhh
Q 000050 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~---~~~~~~~~~~l~~i~p~L~~~ 1584 (2622)
..++++.+|+.|.+.|.++.. +|.+...+-.++..+.+.+..+|...-.+.+. .....+++.....+.+.+.++
T Consensus 22 ~~s~d~~~r~~Ae~~L~~~~~---~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~ 98 (852)
T 4fdd_A 22 SQSPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN 98 (852)
T ss_dssp HTCSCHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT
T ss_pred HhCcCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 346799999999999988743 46655555555555456667788432222221 222345666777888999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--------Cch
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--------NFP 1656 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~--------~~~ 1656 (2622)
+.+.++.+|..++.+++.++..- . ...++.+++.+.+.+.++++.+|..+..+++.+++..++. .+.
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~-~----~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKG-E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT-T----TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-C----ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 99999999999999999998852 2 2356789999999999999999999999999999987643 256
Q ss_pred hhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhh
Q 000050 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p 1733 (2622)
.++|.+++.+.+ .+..+|..++.+++.++...+.. .++.+++.+.+.++++++.+|..++.+|+.++...+..+.|
T Consensus 174 ~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 678888777764 45668999999988776544433 24678888888889999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH-----hhhchhhhhHHHHhhccC-----------C-----------
Q 000050 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVEDGIF-----------N----------- 1786 (2622)
Q Consensus 1734 ~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~-----~~~~~i~~llp~l~~~l~-----------d----------- 1786 (2622)
|++.+++.++..+.|.++.||..|++++..+.+. +-...+..++|.+...+. |
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 9999999999999999999999999988876532 122344556777765552 2
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHH
Q 000050 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866 (2622)
Q Consensus 1787 ~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~ 1866 (2622)
.+|.+|..+...++.+.. .+|.+....+++.+...+.|.++.+|.+|+.
T Consensus 333 ~~~~vr~~a~~~L~~la~-------------------------------~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~ 381 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLAN-------------------------------VYRDELLPHILPLLKELLFHHEWVVKESGIL 381 (852)
T ss_dssp CCCCHHHHHHHHHHHHHH-------------------------------HHGGGGHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH-------------------------------hccHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456666666666666543 2333334455555555667889999999999
Q ss_pred HHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHhhhcCCCChhhHHh
Q 000050 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQG 1942 (2622)
Q Consensus 1867 ~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vR~~ 1942 (2622)
+++.++.+.+..+.++++.+++.++..+.++++.+|..++.+++.+....+. ...+.+++.+.+.+.|+++.+|..
T Consensus 382 alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 382 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999988888899999999999999999999999999999999987654 256788899999999999999999
Q ss_pred HHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHH
Q 000050 1943 VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTAL 2022 (2622)
Q Consensus 1943 a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL 2022 (2622)
++.+++.++...+.. +.+|++.+++.+...+.+.+......+..+++.+....|....
T Consensus 462 a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~--------------------- 519 (852)
T 4fdd_A 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN--------------------- 519 (852)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGC---------------------
T ss_pred HHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhc---------------------
Confidence 999999998877654 7889999999999888766555555555566655544332110
Q ss_pred HHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHH---hcCCCCHHHHHHHHHHHH
Q 000050 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLS---AMGDDDMDVQSLAKEAAE 2099 (2622)
Q Consensus 2023 ~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~---~l~~~~~~vr~~a~~al~ 2099 (2622)
-.+|++.++|.+++ .+.+.+++++ .+.++++
T Consensus 520 ---------------------------------------------~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~ 553 (852)
T 4fdd_A 520 ---------------------------------------------KPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLS 553 (852)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHH
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHH
Confidence 02244455555552 3344455554 4566666
Q ss_pred HhhhccCh---hcHHHHHHHHHhhc-----------------CCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHH
Q 000050 2100 TVTLVIDE---EGVESLVSELLKGV-----------------GDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST 2157 (2622)
Q Consensus 2100 ~l~~~~~~---~~l~~ll~~Ll~~l-----------------~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~ 2157 (2622)
.++..++. +++..+++.++..+ ..++...|..++.+++.+++..+..+.+|+ +.+++.
T Consensus 554 ~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 554 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence 66665543 22333333222222 233677899999999999998888888887 789999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHH
Q 000050 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQG 2237 (2622)
Q Consensus 2158 L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~ 2237 (2622)
++..++|++..||..+..+++.++...+... .+++..++|.+.+.
T Consensus 634 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~l~~~lp~l~~~ 678 (852)
T 4fdd_A 634 MYQCMQDKMPEVRQSSFALLGDLTKACFQHV-----------------------------------KPCIADFMPILGTN 678 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT-----------------------------------GGGHHHHHHHHHHT
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHHHhhHHH-----------------------------------HHHHHHHHHHHHHH
Confidence 9999999999999999999999986543221 13556688888888
Q ss_pred HccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC-CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHH
Q 000050 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQT 2316 (2622)
Q Consensus 2238 L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~ 2316 (2622)
+..+..++|..|+.++|.++...+ ..+.||+..++++|++++++. .+..++..+..++|.++...+..+.||++++++
T Consensus 679 l~~~~~~v~~~a~~alg~i~~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~ 757 (852)
T 4fdd_A 679 LNPEFISVCNNATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIR 757 (852)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHG-GGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHH
Confidence 877788999999999999999998 579999999999999999764 245799999999999999988889999999999
Q ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHhcccC-hhhHHHHHHHhh
Q 000050 2317 TFIKCLQD-STRTVRSSAALALGKLSALSTR-VDPLVGDLLSSL 2358 (2622)
Q Consensus 2317 ~llk~L~d-~~~~vR~~Aa~aLg~L~~~~~~-~~~ll~~Ll~~l 2358 (2622)
.+++.|.+ .+.+.|..|..+|..++..+|. +.+.+..++..+
T Consensus 758 ~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~ 801 (852)
T 4fdd_A 758 PWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAV 801 (852)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 99999987 4677899999999999876654 344444444444
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=395.44 Aligned_cols=749 Identities=15% Similarity=0.154 Sum_probs=552.2
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCC--ChhHHH-HH---HHHHhc----------ccccc
Q 000050 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SL---DILLQT----------TFVNT 1568 (2622)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~--~~~~r~-al---~~L~~~----------~~~~~ 1568 (2622)
+..+.++++.+|..|...|..+... ....+.+.|+..+.++ +..+|. |. +..+.. .....
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 3345577899999999999887642 2345666666666553 456673 22 222210 01123
Q ss_pred CChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000050 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSL 1646 (2622)
Q Consensus 1569 ~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~vR~~a~~aL~~L 1646 (2622)
+.+.....+.+.+.+.+.+.+..+ ..++++++.++.... ...+++.+++.+...+.++ ++.+|..+..+++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~----~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC----cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 455566677777888888877778 889999999887531 1245788999999999998 999999999999999
Q ss_pred HhhhCC----CCchhhHHHHHHHhhhcC-ChHHHHHHHHHHHHHHHHhchhH----H-HhHhHHHHHhccCCChhhHHHH
Q 000050 1647 IRGMGE----ENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVY----F-EHILPDIIRNCSHQRASVRDGY 1716 (2622)
Q Consensus 1647 ~~~~g~----~~~~~ll~~Ll~~L~~~~-~~~~r~~a~~~L~~i~~~~g~~~----l-~~llp~l~~~l~~~~~~vR~~a 1716 (2622)
+..+++ .+.+.+++.+...+.+++ +..+|..++.+++.++..++... . ..+++.+.+.+.+.++.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 987643 356778888888887663 46688889999988776544321 1 2467777777788899999999
Q ss_pred HHHHHHhhhhhCcchhhhHH-hHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh------------------------c
Q 000050 1717 LTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYAT------------------------T 1771 (2622)
Q Consensus 1717 l~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~------------------------~ 1771 (2622)
+.++..++...+..|.||+. .+++.++..+.+.++.+|..++..+..+.+.... .
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHH
Confidence 99999999999999999999 9999999999999999999999988877654210 0
Q ss_pred hhhhhHHHHhhccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHH
Q 000050 1772 SLPLLLPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~-------d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~ 1844 (2622)
.+..++|.+.+.+. |++|++|.++..+++.+.... |.+..+.
T Consensus 318 ~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~-------------------------------~~~~~~~ 366 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-------------------------------EDDIVPH 366 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-------------------------------GGGGHHH
T ss_pred HHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC-------------------------------cHhhHHH
Confidence 12345555544432 456777777777777664332 2223345
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-----
Q 000050 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----- 1918 (2622)
Q Consensus 1845 il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p-~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~----- 1918 (2622)
+++.+...+.|.++.+|.+|+.+++.++.+.+ ..+.++++.+++.++..+.++++.+|..|+.+++.+++..+.
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 56656566788999999999999999998765 667789999999999999999999999999999999998764
Q ss_pred chhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC-------------hhhHHHhHHhHHHHHHHHhcCC---cHHHH
Q 000050 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-------------KSQLLSFMDELIPTIRTALCDS---ILEVR 1982 (2622)
Q Consensus 1919 ~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~-------------~~~l~~~l~~ll~~l~~~L~d~---d~~VR 1982 (2622)
..++.+++.+...+.++ +.+|..++.+++.++...+ .+.+.+|++.+++.+...+.+. +..+|
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 35778889888888885 8999999999999987654 1346789999999999998765 45789
Q ss_pred HHHHHHHHHHHHHhChhh---hhhhHHHHHHhcccC---------CchhHHHHHHHHHHhhhccccccchhhhhhcCCCc
Q 000050 1983 ESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDD---------QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2622)
Q Consensus 1983 ~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~---------~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~ 2050 (2622)
..+.++++.+....|... ...++|.+++.+... +...... +. +.
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~-------------------~~-----~~ 581 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQF-------------------ND-----LQ 581 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHH-------------------HH-----HH
T ss_pred HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHH-------------------HH-----HH
Confidence 999999999998877532 234455555444320 0000000 00 01
Q ss_pred hHHHHHHHHHHHHhC-CChhhhHhhhHHHHHHhcCCCC--HHHHHHHHHHHHHhhhccCh---hcHHHHHHHHHhhcCCC
Q 000050 2051 AFNAHALGALAEVAG-PGLNFHLGTILPALLSAMGDDD--MDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDN 2124 (2622)
Q Consensus 2051 ~~~~~aL~sLa~~~g-~~l~~~l~~il~~Ll~~l~~~~--~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~d~ 2124 (2622)
.....+++.+....| ..+.+|++.++|.++..+.+.. +.+|+.+..+++.++...+. +++..+++.+...+.+.
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 123456777777778 8899999999999999997664 47899999999998876543 45788999999988876
Q ss_pred -ChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCccc---hhhHHHHHHH
Q 000050 2125 -QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV---QPSYIKVIRD 2198 (2622)
Q Consensus 2125 -~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d--~d~~V~~~a~~aL~~l~~~~~~~~---l~~lv~~l~~ 2198 (2622)
++.+|..++.+++.++...+..+.++.+.+++.++..+.+ .+.+++..+..+++.++...+.+. ++.+++.+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 8999999999999999888888999999999999999986 467899999999999987655432 3333333322
Q ss_pred HHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCh---------hhhhhhh
Q 000050 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------QSLKEFV 2269 (2622)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~---------~~l~p~v 2269 (2622)
.+.... + +.. .-...+ ...+|..+..+++.++...+. ..+.||+
T Consensus 742 ~~~~~~---------------~---~~d--~~~~~~-------~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 794 (876)
T 1qgr_A 742 ASQAQV---------------D---KSD--YDMVDY-------LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRV 794 (876)
T ss_dssp HHTCCC---------------C---TTC--HHHHHH-------HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGH
T ss_pred HHhccC---------------C---CCC--hHHHHH-------HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHH
Confidence 221000 0 000 000000 126788888889888877653 4688999
Q ss_pred hhhhHHHHHhhcCCC-CHhhHHHHHHHHHHHHHhcCC-CccCc-hHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhccc
Q 000050 2270 IPITGPLIRIIGDRF-PWQVKSAILSTLSIIIRKGGI-ALKPF-LPQLQTTFIK-CLQDSTRTVRSSAALALGKLSALST 2345 (2622)
Q Consensus 2270 ~~i~~~Li~~l~~~~-~~~vk~~al~~L~~L~~~~~~-~l~p~-l~~L~~~llk-~L~d~~~~vR~~Aa~aLg~L~~~~~ 2345 (2622)
..+++.+.....+.. +..+|..++.+|+.++...|. .+.+| .+++++.+++ ++.|+++.+|..|+.++|.+..+.+
T Consensus 795 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 795 EFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhc
Confidence 999877766666543 678999999999999999988 78888 5678888888 9999999999999999999976543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=390.51 Aligned_cols=734 Identities=16% Similarity=0.187 Sum_probs=559.8
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh-----------
Q 000050 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGM----------- 1650 (2622)
Q Consensus 1584 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~----------- 1650 (2622)
.+.+.+.++|+.|.+.+..+... ..+.+.+.+...+.+ ..+.+|..|+..|...+...
T Consensus 9 ~~~s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 9 KTVSPDRLELEAAQKFLERAAVE---------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 34566789999999999876541 134456666666655 46899999999999876321
Q ss_pred ----CCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch-hHHHhHhHHHHHhccCC--ChhhHHHHHHHHHHh
Q 000050 1651 ----GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYL 1723 (2622)
Q Consensus 1651 ----g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~-~~l~~llp~l~~~l~~~--~~~vR~~al~~l~~L 1723 (2622)
.++....+.+.+++.+.++.+. . ..++++++.++...+. ..+++++|.+.+.+.++ ++.+|.+++.+++.+
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~-~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSS-S-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHH-H-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 1112234455577777765544 4 7788899998887654 67889999999999888 899999999999999
Q ss_pred hhhh-CcchhhhHHhHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHhhhch-----hhhhHHHHhhccCCCchHHHHHH
Q 000050 1724 PRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSS 1795 (2622)
Q Consensus 1724 ~~~~-g~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~lv~~~~~~~-----i~~llp~l~~~l~d~~~rvR~~a 1795 (2622)
+..+ +..|.+|++.+++.+...+.++ +..+|..+++++..++..++... .+.+++.+.+.+.+.++++|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9876 4567889999999999999987 68899999999988765433221 12467777777888899999999
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC
Q 000050 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2622)
Q Consensus 1796 ~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~ 1875 (2622)
++.++.++...+.. +...+. ..+++.+.....|.+..||..|++.|..++...
T Consensus 238 ~~~l~~l~~~~~~~-----------------------~~~~~~----~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~ 290 (876)
T 1qgr_A 238 LQNLVKIMSLYYQY-----------------------METYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (876)
T ss_dssp HHHHHHHHHHSGGG-----------------------CHHHHT----TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH-----------------------HHHHHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 99999987543210 111111 134555555567888999999999999998642
Q ss_pred h---------------------hhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHH
Q 000050 1876 P---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2622)
Q Consensus 1876 p---------------------~~l~~~l~~ll~~L~~~L~-------s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~ 1927 (2622)
. ...+++++.+++.++..+. +.++..|..|..+++.++...|+.+.+.++|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~ 370 (876)
T 1qgr_A 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPF 370 (876)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHH
Confidence 1 1233456778888888775 34678999999999999999998888999999
Q ss_pred HhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-----hhhh
Q 000050 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAID 2002 (2622)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~-----~~~~ 2002 (2622)
+...+.++++.+|.+++.+++.+....+++.+.++++.++|.+...+.|+++.||..|+.+++.+....+. ..++
T Consensus 371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (876)
T 1qgr_A 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence 99999999999999999999998776665667789999999999999999999999999999999887654 3456
Q ss_pred hhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhC--------------CCh
Q 000050 2003 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG--------------PGL 2068 (2622)
Q Consensus 2003 ~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g--------------~~l 2068 (2622)
.++|.++..|.++ .. +....+.+++.+...++ ..+
T Consensus 451 ~~l~~l~~~l~~~-~~------------------------------v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l 499 (876)
T 1qgr_A 451 PLLQCLIEGLSAE-PR------------------------------VASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499 (876)
T ss_dssp HHHHHHHHHTTSC-HH------------------------------HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS
T ss_pred HHHHHHHHHHcCC-HH------------------------------HHHHHHHHHHHHHHHhhhccccccccccccchhh
Confidence 6777777777553 10 01123345555555443 458
Q ss_pred hhhHhhhHHHHHHhcCCC---CHHHHHHHHHHHHHhhhccCh---hcHHHHHHHHHhhcC-----------CCC----hh
Q 000050 2069 NFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVG-----------DNQ----AS 2127 (2622)
Q Consensus 2069 ~~~l~~il~~Ll~~l~~~---~~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~-----------d~~----~~ 2127 (2622)
.||++.++|.|+..+.+. +..+|..+.++++.++...+. ..+..+++.++..+. +++ +.
T Consensus 500 ~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~ 579 (876)
T 1qgr_A 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND 579 (876)
T ss_dssp TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 899999999999998654 467899999999999987764 335667776665543 222 45
Q ss_pred HHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhch
Q 000050 2128 IRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 2204 (2622)
Q Consensus 2128 vR~~A~~~L~~l~~~~~-~~l~~~~~~il~~L~~~l~d~d--~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~ 2204 (2622)
+|..++.+++.++...+ .++.+|.+.+++.++..+++.. ..++..+..+++.++...+...
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~---------------- 643 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF---------------- 643 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGG----------------
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhH----------------
Confidence 78899999999999888 8899999999999999998764 4788888888888765432111
Q ss_pred hhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC
Q 000050 2205 DKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283 (2622)
Q Consensus 2205 ~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~ 2283 (2622)
..++..++|.+...+.+. ++++|..++.+++.++...+ ..+.||+..+++.++..+.+.
T Consensus 644 -------------------~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~ 703 (876)
T 1qgr_A 644 -------------------LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLGNE 703 (876)
T ss_dssp -------------------GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTCT
T ss_pred -------------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhCCc
Confidence 134456778888888876 78999999999999999888 689999999999999999762
Q ss_pred -CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHhc-c------
Q 000050 2284 -FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-----------RTVRSSAALALGKLSAL-S------ 2344 (2622)
Q Consensus 2284 -~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~-----------~~vR~~Aa~aLg~L~~~-~------ 2344 (2622)
.+.++|..++.+++.++...|..+.+|+|.+.+.+.+.+.+.. ..+|..+..+++.++.. +
T Consensus 704 ~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~ 783 (876)
T 1qgr_A 704 NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783 (876)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred cccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 3578999999999999999999999999999999999887642 28999999999877432 1
Q ss_pred ----cChhhHHHHHHHhh----hcC--CHhHHHHHHHHHHHHHhhcCC-CCChHH-HHHHHHHHHH-hhcCCCHHHHHHH
Q 000050 2345 ----TRVDPLVGDLLSSL----QVS--DAGIREAILTALKGVLKHAGK-SVSSAV-KIRVYSVLKD-LVYHDDDHVRVSA 2411 (2622)
Q Consensus 2345 ----~~~~~ll~~Ll~~l----~~~--d~~vr~~~l~AL~~vi~~~g~-~~~~~~-~~~i~~~L~~-~l~~~~~~vr~~a 2411 (2622)
..+.++++.++..+ .++ +..+|..++.+|..++...|. .+ .++ .+.++..+.. .+.++++.+|.+|
T Consensus 784 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~i~~ll~~~l~~~~~~~r~~a 862 (876)
T 1qgr_A 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL-KLVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp CGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH-HHHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHH-HHHHhcHHHHHHHHHHhhcCCHhHHHHH
Confidence 24566777766554 444 678999999999999998877 44 334 4455555555 8889999999999
Q ss_pred HHHHHHHHhhcC
Q 000050 2412 ASILGIMSQCME 2423 (2622)
Q Consensus 2412 a~~Lg~L~~~~~ 2423 (2622)
+.++|.+++..+
T Consensus 863 ~~a~~~~~~~~~ 874 (876)
T 1qgr_A 863 RWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 999999986543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=371.83 Aligned_cols=566 Identities=18% Similarity=0.215 Sum_probs=450.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~ 1416 (2622)
..+..+++.+.+ +++..|..|+..++.++..+|+.... ..+++.+.+.+ ++ ++.+|..+..+++.+....+. ..
T Consensus 10 ~~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~-~~l~~~L~~~~-d~-~~~vr~~~~~~L~~~~~~~~~--~~ 83 (588)
T 1b3u_A 10 YPIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTI-YD-EDEVLLALAEQLGTFTTLVGG--PE 83 (588)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTC-CC-CHHHHHHHHHHHTTCSGGGTS--GG
T ss_pred CcHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHhc-CC-cHHHHHHHHHHHHHHHhccCc--HH
Confidence 346677777654 45789999999999988877765442 36888888776 44 688999888888776655442 24
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
+...++|.+...+.|+++.||+.|..++..++..+++..+ ..++|.+.+...+++|..|..++.+++.++...+..
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 5667888888888999999999999999999998887765 455666656666778899999999999988766543
Q ss_pred hhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhh
Q 000050 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2622)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2622)
..+.++|.+..+++|+++.||.+|+.+|+.+++.++.+.. ..
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--------------------------------------~~ 202 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------KS 202 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--------------------------------------HH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--------------------------------------HH
Confidence 3567889999999999999999999999999987653211 12
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-C
Q 000050 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-N 1654 (2622)
Q Consensus 1576 ~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-~ 1654 (2622)
.++|.+...++|.++.+|..|..+++.++...+. ..+.+.++|.+...+.|++|.+|..++.+++.++...|++ +
T Consensus 203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~ 278 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT 278 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccc
Confidence 3455555556666777888888888887775432 1245567888888888888999999999999988877755 3
Q ss_pred chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh-----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc
Q 000050 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2622)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 1729 (2622)
.+.++|.+...+.++ ...+|..++.+++.++..+|.+ .++.++|.+...++++++.+|..++.+++.++..+|.
T Consensus 279 ~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~ 357 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357 (588)
T ss_dssp HHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH
T ss_pred hhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 456778777777644 4568888888888888887754 4678889898889999999999999999999999987
Q ss_pred chhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcC
Q 000050 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1808 (2622)
Q Consensus 1730 ~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~-~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~ 1808 (2622)
.. +.+.++|.+...+.|++++||..+..++..+...++.. ..+.++|.+.+.+.|.+|++|..+++.++.+...++
T Consensus 358 ~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~- 434 (588)
T 1b3u_A 358 DN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG- 434 (588)
T ss_dssp HH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC-
T ss_pred hH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC-
Confidence 43 45678899999999999999999999999998877654 346789999999999999999999999998764432
Q ss_pred CcccccccCCCCCCcccHHHHHHHHHHHhChhh-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 000050 1809 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887 (2622)
Q Consensus 1809 ~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~-~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll 1887 (2622)
.+. .+.+++.+...+.|.+..||..|+.+++.++...+.. .+++.++
T Consensus 435 ------------------------------~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~ll 482 (588)
T 1b3u_A 435 ------------------------------VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATII 482 (588)
T ss_dssp ------------------------------GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTH
T ss_pred ------------------------------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHH
Confidence 111 1245566666788999999999999999999876543 3467788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhH
Q 000050 1888 NTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2622)
Q Consensus 1888 ~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~l 1966 (2622)
|.+...+.++++.+|..++.+++.++..+|.. +.+.++|.+...++|+++++|..++.+++.+....+.... .+.+
T Consensus 483 p~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~ 559 (588)
T 1b3u_A 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEV 559 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHH
Confidence 88888888999999999999999999988765 5788999999999999999999999999999877765432 2577
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000050 1967 IPTIRTALCDSILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1967 l~~l~~~L~d~d~~VR~~A~~al~~l 1992 (2622)
+|.+...+.|.|++||..|+.+++.+
T Consensus 560 ~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 560 KPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 88888888999999999999998865
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-29 Score=347.23 Aligned_cols=566 Identities=18% Similarity=0.220 Sum_probs=447.6
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh-hHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000050 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2622)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2622)
+..++..+.++++.+|..|.++++.++..++.. .... ++|
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~---------------------------------------l~~ 52 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSE---------------------------------------LLP 52 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHT---------------------------------------HHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHH---------------------------------------HHH
Confidence 456777889999999999999999887654321 1222 444
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhh
Q 000050 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDL 1658 (2622)
Q Consensus 1580 ~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~-~~l 1658 (2622)
.+.... +.++++|..+...++.++..++. ..|...+++.+...+.|+++.||..|..+++.++...+++.+ +.+
T Consensus 53 ~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~----~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l 127 (588)
T 1b3u_A 53 FLTDTI-YDEDEVLLALAEQLGTFTTLVGG----PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127 (588)
T ss_dssp HHHHTC-CCCHHHHHHHHHHHTTCSGGGTS----GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTH
T ss_pred HHHHhc-CCcHHHHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 444444 45678888888888877765543 236677888888888899999999999999999987765432 345
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhH
Q 000050 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2622)
Q Consensus 1659 l~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~i 1738 (2622)
+|.+.... .++....|..++..++.+....+....+.++|.+.+.+.++++.+|..++.+++.++..+|.. .+.+.+
T Consensus 128 ~~~l~~l~-~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l 204 (588)
T 1b3u_A 128 VPLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEI 204 (588)
T ss_dssp HHHHHHHH-TCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTH
T ss_pred HHHHHHHh-cCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHH
Confidence 55554443 344566788888888888887777667888898889899999999999999999999988863 466789
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC
Q 000050 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2622)
Q Consensus 1739 i~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~-~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~ 1817 (2622)
+|.+...+.|+++.||..|..++..+....+.+ ..+.++|.+...+.|++|++|..+++.++.+....+
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---------- 274 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---------- 274 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC----------
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC----------
Confidence 999999999999999999999999988877654 345688888888999999999999999998864321
Q ss_pred CCCCCcccHHHHHHHHHHHhChh-hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHH--HHHHHHHHHHHHHh
Q 000050 1818 GSDDEGASTEAHGRAIIEVLGRD-KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EIMPVLMNTLISSL 1894 (2622)
Q Consensus 1818 ~~dde~~~~~~~~~~l~~~Lg~e-~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~--~~l~~ll~~L~~~L 1894 (2622)
.+ ..+.+++.+...+.|.++.||..|...++.++...+.... .+++.+++.+...+
T Consensus 275 ---------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l 333 (588)
T 1b3u_A 275 ---------------------PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333 (588)
T ss_dssp ---------------------HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH
T ss_pred ---------------------cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh
Confidence 11 1223555566667899999999999999999987765432 57888889999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHH
Q 000050 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2622)
Q Consensus 1895 ~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2622)
.++++.+|..++.+++.++..+|.. ..+.++|.+...++|+++++|..++.+++.++...+.+. +.+.++|.+...
T Consensus 334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~ 410 (588)
T 1b3u_A 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVEL 410 (588)
T ss_dssp TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHH
Confidence 9999999999999999999988876 467899999999999999999999999999887766543 346788888888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhhh-hhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchH
Q 000050 1974 LCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052 (2622)
Q Consensus 1974 L~d~d~~VR~~A~~al~~l~~~~g~~~~-~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~ 2052 (2622)
+.|++..+|..++.+++.+....|...+ +.++|.++..|.++... +...
T Consensus 411 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~------------------------------Vr~~ 460 (588)
T 1b3u_A 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYA------------------------------IREA 460 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHH------------------------------HHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHH------------------------------HHHH
Confidence 9999999999999999999988887543 45678777777665421 1112
Q ss_pred HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh-hcHHHHHHHHHhhcCCCChhHHHH
Q 000050 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRS 2131 (2622)
Q Consensus 2053 ~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l~d~~~~vR~~ 2131 (2622)
+..+++.+....|.. .+++.++|.+...+.+++..+|..+..+++.+...++. .....+++.+...++|+++.+|..
T Consensus 461 a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHH
Confidence 345566666666653 34688999999888889999999999999999887654 346789999999999999999999
Q ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000050 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2622)
Q Consensus 2132 A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~ 2181 (2622)
++.+++.++...+.++. .+.+++.+..+++|+|.+||..|..|++.+.
T Consensus 539 a~~~l~~l~~~~~~~~~--~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 539 VAKSLQKIGPILDNSTL--QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHGGGSCHHHH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhchhhh--HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99999999987654432 2567777777889999999999999998763
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=269.65 Aligned_cols=310 Identities=26% Similarity=0.476 Sum_probs=280.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--ccch
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFE 1415 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~--~~~~ 1415 (2622)
.++.+++.+..++ ...++.++..++.++.+-+........+++.+.+.+.+++++ ++|+.++..+++..+ ..++
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcc
Confidence 4445666665544 567899999999998865433332347899999999988655 999999999997665 4689
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCC-ChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
||+..++|.++..++|....||++|..++..++..++++.++.++|.+++.|.+. .|+.|.+|+.+++.++..+|+++.
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999754 799999999999999999999999
Q ss_pred hhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhh
Q 000050 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2622)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2622)
.++|+++|.+.+++.|.+++|+.+|..++..++..+.|+++.+++|.|++++.+| +.+.+|++.|..|+|+..+++|.+
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~~l 249 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPATL 249 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHHHH
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecchhH
Confidence 9999999999999999999999999999999999999999999999999999999 458899999999999999999999
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCC
Q 000050 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
+.++|.|.++|.+++..++++++.+++|||+++.+|.+..||++.++|.+.+.... .+|++|+.+.+|+..+.+..+.
T Consensus 250 ~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 250 SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999998763 5899999999999999887554
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-18 Score=244.91 Aligned_cols=645 Identities=12% Similarity=0.115 Sum_probs=400.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcC--C
Q 000050 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG--Y 1126 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~--~ 1126 (2622)
+++.++|.+++|||+.+| |+++|++.. +.|.....+..+.. ..+.+..+|.+|. ..|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-----~~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLE-----TQDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHH-----TSTTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhh-----cCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 478899999999999999 999998763 11333333333322 2334566777763 4675321 1
Q ss_pred CCCCC----h-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000050 1127 DFGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2622)
Q Consensus 1127 ~~~~~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2622)
.++++ + ..+++.+.+++..+|+.++++++.++. .||+.|++++..+.+.. .. .+...+.++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s------~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SN------DDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CS------SCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CC------CCHHHHHHHHHH
Confidence 23332 3 667888877779999999999999975 57888888888887542 11 123578899999
Q ss_pred HHHhhhhhCC--C--Ch-hH-----------HHHHHH--hhhcCCCCH---HHH--HHHHHHHHHHHHHh-----c---c
Q 000050 1201 LHSAADVLRT--K--DL-PV-----------IMTFLI--SRALADTNA---DVR--GRMLNAGIMIIDKH-----G---R 1249 (2622)
Q Consensus 1201 l~~~~~~~~~--~--~~-~~-----------i~~~li--~~~l~d~~~---~VR--~~a~~a~~~~i~~~-----g---~ 1249 (2622)
+.++++.+.. . +. .. +++.+. ..++.+... .+| ..++.++..++... . .
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999886542 1 11 11 112111 123444322 244 12222222222211 1 1
Q ss_pred chhhhhHHHHHHHhcCCCC----C--h---hhhhhhhhHHHHHHHHHhh-hhccCCcchHHHHHHHHHHcC-----CCCH
Q 000050 1250 DNVSLLFPIFENYLNKKAS----D--E---EKYDLVREGVVIFTGALAK-HLAKDDPKVHAVVDKLLDVLN-----TPSE 1314 (2622)
Q Consensus 1250 ~~~~~llp~~~~~l~~~~~----~--~---~~~~~vr~~~~~~~~~la~-~l~~~~~~v~~i~~~L~~~l~-----~~~~ 1314 (2622)
++....++.|.+++....+ + + ...+.+|..++..+..+.. |.+.-.+.++.+++.+...+. ...+
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 2345567777777754211 0 0 0113456666666665553 221123456666666666553 3356
Q ss_pred HHHHHHHhhhHhhHhhhc--cch--HHHHHHHH-----HHHh----------------------cCCChHHHHHHHHHHH
Q 000050 1315 AVQRAVSSCLSPLMQSMQ--DEA--PTLVSRLL-----DQLM----------------------KSDKYGERRGAAFGLA 1363 (2622)
Q Consensus 1315 ~Vq~~a~~~L~~lv~~~~--~~~--~~~i~~Ll-----~~L~----------------------~~~~~~~r~~Aa~~L~ 1363 (2622)
.++..+.+.+..++.... ... ...++.++ ..+. .++.+..|+.|...|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 777777766665542211 111 12333333 2221 1223467899999999
Q ss_pred HHHhhhCccchhhhcHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHh-----c-c------cchhHHHHHHHHHH
Q 000050 1364 GVVKGFGISSLKKYGIAATLREGLAD-----RNSAKRREGALLAFECLCEKL-----G-R------LFEPYVIQMLPLLL 1426 (2622)
Q Consensus 1364 ~l~~~lg~~~l~~~~i~~~L~~~l~~-----~~~~~~R~~al~al~~La~~~-----~-~------~~~~~v~~ilp~ll 1426 (2622)
.++...|...+. .+++++.+.+.. ..+|+.|++|+++++.++++. | . .+.+++. ..++
T Consensus 387 ~l~~~~~~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~---~~v~ 461 (960)
T 1wa5_C 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT---KEIA 461 (960)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH---HHTH
T ss_pred HHHHHcchhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH---HHhH
Confidence 999988844443 577887777761 337999999999999998752 1 1 2333322 3344
Q ss_pred HHcCCC---CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhh-----------Cchh
Q 000050 1427 VAFSDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQQ 1492 (2622)
Q Consensus 1427 ~~l~D~---~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~-----------~p~~ 1492 (2622)
..+.|+ ++.||.+|+.+++.+.+.+++.....++|.++..|.+++.+++..|+.+|..+++. .+..
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 455666 89999999999999999888777899999999999988899999999999998873 2456
Q ss_pred hhhhhhhhHHHHhhhhcCCC---HH--HHHHHHHHHHHHhhhcCC---hhHHhHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 000050 1493 LSQCLPKIVPKLTEVLTDTH---PK--VQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2622)
Q Consensus 1493 l~~~L~~ivp~L~~~L~D~~---~~--VR~aA~~aL~~l~~~~~~---~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2622)
+.++++.+++.++.+++... +. ....+..+|+.++...++ |++..+++.|...+
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l------------------ 603 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV------------------ 603 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH------------------
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------
Confidence 88999999999999987641 12 446778888888776653 33333443333322
Q ss_pred ccccCChhhhhhHHHHHHhhhc-CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1565 FVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
....+ ..+...+..++++++.++.. ..++.+.++.+.++|.+...+.....+....+...+
T Consensus 604 -----------------~~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 604 -----------------TIMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp -----------------HHHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred -----------------HHHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 11111 23456667788889888876 344667888999999999999877778888899999
Q ss_pred HHHHhhhC--CCCchhhHHHHH--HHhhhcCChHHHHHHHHHHHHHHHHhchhHH--HhHhHHHHHhccCCChhhHHHHH
Q 000050 1644 GSLIRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGYL 1717 (2622)
Q Consensus 1644 ~~L~~~~g--~~~~~~ll~~Ll--~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~~~~~~vR~~al 1717 (2622)
+.+..... .+++..++|.+. ..+.... ........+...+...+.... +.++..+.+.+.+.. .++.++
T Consensus 666 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a~ 740 (960)
T 1wa5_C 666 AFVVEQSATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGF 740 (960)
T ss_dssp HHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchHH
Confidence 99887652 125667777776 5444332 112333334444433322211 222222222233333 358899
Q ss_pred HHHHHhhhhhCcc-hhhhHHhHHHHHHhhcCCC-ChHHHHHHHHHHHHHH
Q 000050 1718 TLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLV 1765 (2622)
Q Consensus 1718 ~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~-~~~VR~~al~al~~lv 1765 (2622)
.+++.++..+|.. |.||++.+++.++..+... .+..+...+..+..++
T Consensus 741 ~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 741 DLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 9999999999988 9999999999999998765 3555544444444443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-16 Score=234.24 Aligned_cols=726 Identities=14% Similarity=0.157 Sum_probs=437.7
Q ss_pred hHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcCC
Q 000050 1056 PNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2622)
Q Consensus 1056 ~~~~~~ll~~-~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~ 1126 (2622)
.+++.++|++ ..++|+..|++|++.|++.... |....+...+. ..+.+..+|-+|. ..|.....
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQLL--QPDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 3567788888 4579999999999999875311 22222332322 2355666676654 35765432
Q ss_pred CCCCCh-HhHHHHhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHH
Q 000050 1127 DFGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201 (2622)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~---~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al 1201 (2622)
+-.+.+ ..+++.+.+ ....+|++.+.+++.++. .||+.|++++..+.+...... +. ..+...+..+...|
T Consensus 96 ~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~----~~-~~~~~~~~~~l~iL 170 (963)
T 2x19_B 96 DQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAED----SP-VDGQGRCLALLELL 170 (963)
T ss_dssp GGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhc----cC-CCcHHHHHHHHHHH
Confidence 222224 566766654 368999999999999875 688888888888876541100 00 00223566677777
Q ss_pred HHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHH
Q 000050 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVV 1281 (2622)
Q Consensus 1202 ~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~ 1281 (2622)
..+++.+.+... ...-|... +..=....+.+++.+..++..... .+.++..+.
T Consensus 171 ~~l~ee~~~~~~---------------~~~~r~~~--------~~~l~~~~~~i~~ll~~~l~~~~~----~~~~~~~~l 223 (963)
T 2x19_B 171 TVLPEEFQTSRL---------------PQYRKGLV--------RTSLAVECGAVFPLLEQLLQQPSS----PSCVRQKVL 223 (963)
T ss_dssp HHHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTC----CHHHHHHHH
T ss_pred HhCHHHHhcccC---------------cHHHHHHH--------HHHHHHHHHHHHHHHHHHHhCCCC----chHHHHHHH
Confidence 776653221110 00001000 000012345667777777754221 112444444
Q ss_pred HHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhc-cchHHHHHHHHHHHh----------cCC
Q 000050 1282 IFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLM----------KSD 1350 (2622)
Q Consensus 1282 ~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~-~~~~~~i~~Ll~~L~----------~~~ 1350 (2622)
.++..... +.........+++.++..+. +++++..+.+|+..++.... ......+..++..+. ..+
T Consensus 224 ~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (963)
T 2x19_B 224 KCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNG 300 (963)
T ss_dssp HHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCC
Confidence 44432222 11111112567777777774 45788889999988875421 112223333322221 122
Q ss_pred ChHHHHHHHHHHHHHHhhhC---------ccchhhhcHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHh-------
Q 000050 1351 KYGERRGAAFGLAGVVKGFG---------ISSLKKYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL------- 1410 (2622)
Q Consensus 1351 ~~~~r~~Aa~~L~~l~~~lg---------~~~l~~~~i~~~L~~~l~~----~~~~~~R~~al~al~~La~~~------- 1410 (2622)
|.......+..+..+..... ...+ ..+++.+.++..+ ..+..+...++..+..+++..
T Consensus 301 d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~ 378 (963)
T 2x19_B 301 DMETSHGICRIAVALGENHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK 378 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence 33344444455554443211 1111 1455666666554 124455666666666666522
Q ss_pred ----cccchhHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhc----
Q 000050 1411 ----GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL---- 1467 (2622)
Q Consensus 1411 ----~~~~~~~v~~ilp~ll~~l~D~~~---------------~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L---- 1467 (2622)
...+.+++.++++.++..+..++. ..|.++.+++..+....+...+..+++.+.+.+
T Consensus 379 ~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~ 458 (963)
T 2x19_B 379 QAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE 458 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC
Confidence 234568888888888887753221 236677788888877777666666666666666
Q ss_pred cCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcC
Q 000050 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLT 1547 (2622)
Q Consensus 1468 ~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~ 1547 (2622)
.+.+|+.+.+++.+++.++++........++.+++.+..+ .++++.||..++++++++++.+...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~-------------- 523 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADH-------------- 523 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHC--------------
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 6789999999999999999987765556677888855544 4468999999999999998765310
Q ss_pred CCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHH
Q 000050 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627 (2622)
Q Consensus 1548 d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~ 1627 (2622)
...+..+++.+..++.+ +.++..|+.++.++++... +.+.||++.++..+...
T Consensus 524 -----------------------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~ 576 (963)
T 2x19_B 524 -----------------------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDV 576 (963)
T ss_dssp -----------------------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHH
Confidence 01223344555555544 5788889999999997543 56899999999999998
Q ss_pred hcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhh----cCChHHHH---HHHHHHHHHHHHhch---
Q 000050 1628 LVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKS----DNSNVERS---GAAQGLSEVLAALGT--- 1691 (2622)
Q Consensus 1628 L~d--~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~----~~~~~~r~---~a~~~L~~i~~~~g~--- 1691 (2622)
+.. .....|..+.+++|.++...+++ ++..+++.+...+.. ..+...+. ....+++.++..++.
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~ 656 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH 656 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 885 36789999999999999877622 455666655554432 21222222 455667788877652
Q ss_pred ------------------h----HHHhHhHHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcC
Q 000050 1692 ------------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1692 ------------------~----~l~~llp~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2622)
+ ..+.++|.+.+.+.. .+..+.+.++.++..++..+|+.|.||++.+++.++....
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 736 (963)
T 2x19_B 657 EDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYS 736 (963)
T ss_dssp C---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHH
Confidence 1 235556665554432 4678999999999999999999999999999998877654
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhc----c---CCCchHHHHHHHHHHHHHHHHhcCCcccccc
Q 000050 1748 DENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDG----I---FNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2622)
Q Consensus 1748 d~~~~VR~~al~al~~lv~~~~~~-----~i~~llp~l~~~----l---~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~ 1815 (2622)
.... ...+..+..++..++.. .+..++..+... + .+++..+|.+...+++.++..++...
T Consensus 737 ~~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~----- 808 (963)
T 2x19_B 737 TIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF----- 808 (963)
T ss_dssp HSCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG-----
T ss_pred cCCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH-----
Confidence 3211 12445556666644332 222222222221 1 22346688999999999887654221
Q ss_pred cCCCCCCcccHHHHHHHHHHHhChhh-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhCh--hh----HHHHHHHHHH
Q 000050 1816 EGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP--KT----LKEIMPVLMN 1888 (2622)
Q Consensus 1816 ~~~~dde~~~~~~~~~~l~~~Lg~e~-~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p--~~----l~~~l~~ll~ 1888 (2622)
+.... +..++..+..++...+..+..+++..|..++...+ .. +.++.+.++.
T Consensus 809 ---------------------~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 867 (963)
T 2x19_B 809 ---------------------LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLI 867 (963)
T ss_dssp ---------------------GCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHH
T ss_pred ---------------------cCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 00111 34455555556677888999999999999987543 22 2345666666
Q ss_pred HHHHHhcC
Q 000050 1889 TLISSLAS 1896 (2622)
Q Consensus 1889 ~L~~~L~s 1896 (2622)
.++..+.+
T Consensus 868 ~l~~~l~~ 875 (963)
T 2x19_B 868 AVLEAIGG 875 (963)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 66666654
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-17 Score=241.22 Aligned_cols=717 Identities=13% Similarity=0.123 Sum_probs=414.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcCCCC
Q 000050 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~~~ 1128 (2622)
+++.++|+.+.+||+..|++|++.|++.... |....+...+. ..+.+..+|-+|. ..|.....+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~-----p~~w~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS-----PQAWQFSWQLM--QLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS-----THHHHHHHHHT--CTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 4577788889999999999999999886411 22222333322 3355666676654 3465533222
Q ss_pred CCCh-HhHHHHhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000050 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2622)
Q Consensus 1129 ~~~~-~~Ll~~l~~---~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~ 1203 (2622)
.+.+ ..+++.+.+ ....+|++.+.+++.++. .|| .|++.+..+.+....... +.. ++...+..+...|..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~---~~~-~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRM---PNV-SADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcccc---ccC-CCHHHHHHHHHHHHH
Confidence 2224 566666543 368999999999999875 577 788877777765432100 000 112356677777776
Q ss_pred hhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCC--ChhhhhhhhhHHH
Q 000050 1204 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 1281 (2622)
Q Consensus 1204 ~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~--~~~~~~~vr~~~~ 1281 (2622)
+++.+... . -.++...++..+ . ...+.+++++.+++..... .......++..+.
T Consensus 155 l~EEi~~~-----------~-~~~~r~~~~~~l--------~----~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEAQVI-----------H-TSVKRVVLRAEI--------A----KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHHHHC-----------C-CSSCHHHHHHHH--------H----TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHhcc-----------C-cHHHHHHHHHHH--------H----HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 66421100 0 001111111111 1 2345556666666643211 1111224566666
Q ss_pred HHHHHHhh--hhccCCcchHHHHHHHHHHc----------------CCCCHHHHHHHHhhhHhhHhhhc-cc----hHHH
Q 000050 1282 IFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APTL 1338 (2622)
Q Consensus 1282 ~~~~~la~--~l~~~~~~v~~i~~~L~~~l----------------~~~~~~Vq~~a~~~L~~lv~~~~-~~----~~~~ 1338 (2622)
.+++.... .++.. ....+++.+.. + .+++++++.++.+|+..++.... .+ ...+
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 66655444 23222 34556666665 4 12457899999999998886422 11 1223
Q ss_pred HHHHHHHH---h---cCCCh---HHHHHHHHHHHHHHhhhCc--------------cchhhhcHHHHHHHHHhC----CC
Q 000050 1339 VSRLLDQL---M---KSDKY---GERRGAAFGLAGVVKGFGI--------------SSLKKYGIAATLREGLAD----RN 1391 (2622)
Q Consensus 1339 i~~Ll~~L---~---~~~~~---~~r~~Aa~~L~~l~~~lg~--------------~~l~~~~i~~~L~~~l~~----~~ 1391 (2622)
++.++... . ..+|. ......+..+..+...... ..+ ..+++.+.++... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~ 365 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPV 365 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTT
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCc
Confidence 33333211 1 12232 3444455555554422110 111 1455555555533 22
Q ss_pred CHHHHHHHHHHHHHHHHHh------------cccchhHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHH
Q 000050 1392 SAKRREGALLAFECLCEKL------------GRLFEPYVIQMLPLLLVAFSDQV---------------VAVREAAECAA 1444 (2622)
Q Consensus 1392 ~~~~R~~al~al~~La~~~------------~~~~~~~v~~ilp~ll~~l~D~~---------------~~VR~aa~~al 1444 (2622)
+..++..++..+..+++.. ...+.+++.++++.++..+.-++ ...|.++.+++
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l 445 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTF 445 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHH
Confidence 5667777887777776622 12346788888888888773111 14678888888
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhccC-----CChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhh-cCCCHHHHHH
Q 000050 1445 RAMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSA 1518 (2622)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L-~D~~~~VR~a 1518 (2622)
..++..++...+..+++.+-+.+.+ .+|+.+.+++.+++.+++++.......++.+++.+..+. .|.++.||..
T Consensus 446 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 446 MYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHH
Confidence 8888877756666667666666654 789999999999999999877766677888888444443 2679999999
Q ss_pred HHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHH
Q 000050 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2622)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~ 1598 (2622)
++++++++++.+... + ..+..++|.+..++ + +.++..|+.
T Consensus 526 a~~~l~~~~~~l~~~---------------~----------------------~~l~~vl~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 526 ALETMGSYCNWLMEN---------------P----------------------AYIPPAINLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp HHHHHHHTHHHHC-----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHH
T ss_pred HHHHHHHHHHHHhcC---------------H----------------------HHHHHHHHHHHHHh-C--hHHHHHHHH
Confidence 999999999876421 0 11223445555555 2 467888999
Q ss_pred HHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhh----h
Q 000050 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----S 1668 (2622)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~----~ 1668 (2622)
++.++++..+ ..+.||++.++..+.+.+.. .....+..+.++++.++...+++ ++..+++.++..+. .
T Consensus 566 al~~l~~~~~--~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 566 GLKELCRDCQ--LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997643 46889999999999999987 45789999999999999877633 45555555555443 2
Q ss_pred cC-ChHHHH---HHHHHHHHHHHHhchh----------------HHHhHhHHHHHhccC--CChhhHHHHHHHHHHhhhh
Q 000050 1669 DN-SNVERS---GAAQGLSEVLAALGTV----------------YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRS 1726 (2622)
Q Consensus 1669 ~~-~~~~r~---~a~~~L~~i~~~~g~~----------------~l~~llp~l~~~l~~--~~~~vR~~al~~l~~L~~~ 1726 (2622)
.. +...+. .....++.++..++.. ..+.++|.+...+.. .+..+.+.++.+++.++..
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 21 222233 3334455555555421 235567766665543 3668999999999999999
Q ss_pred hCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHh
Q 000050 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2622)
Q Consensus 1727 ~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~ 1806 (2622)
+|..|.||++.+++.++..+..... ..++..+..++..++.+. .++....+++..+.
T Consensus 724 ~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~-----------------~~~~~l~~~~~~~~--- 780 (971)
T 2x1g_F 724 LRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE-----------------GCKPLMQQLLREFI--- 780 (971)
T ss_dssp HHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC----------------------HHHHHHHHHHH---
T ss_pred hhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc-----------------chHHHHHHHHHHHH---
Confidence 9999999999999999988875332 224444445444443310 00000000111110
Q ss_pred cCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHhhChhhHH--H
Q 000050 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV---RSDVSLSVRQAALHVWKTIVANTPKTLK--E 1881 (2622)
Q Consensus 1807 ~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~---~~D~~~~VR~aA~~~l~~l~~~~p~~l~--~ 1881 (2622)
..++..+..+ ..+..+++++.....+..+..+.|..+. +
T Consensus 781 ------------------------------------~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~ 824 (971)
T 2x1g_F 781 ------------------------------------QHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKT 824 (971)
T ss_dssp ------------------------------------HHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTT
T ss_pred ------------------------------------HHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCc
Confidence 0011111000 0122567999999999999999887765 6
Q ss_pred H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000050 1882 I-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2622)
Q Consensus 1882 ~-l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~ 1915 (2622)
. ++.+++..+..+..++......+..++..++..
T Consensus 825 ~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 825 LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 6 788888888888766666667778888877665
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-16 Score=226.40 Aligned_cols=709 Identities=10% Similarity=0.101 Sum_probs=423.9
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-hC--
Q 000050 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR-- 1209 (2622)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~~-- 1209 (2622)
..++....++|..+| |.+.+..+ +..|+.+..++..+.+. ..+-++|..++..|+..... +.
T Consensus 8 ~~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~~------------~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 8 AKFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAST------------NLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHCT------------TSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhcC------------CCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 345555567788888 66666544 67787776665555311 12347899999999887642 22
Q ss_pred -------CCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHH
Q 000050 1210 -------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2622)
Q Consensus 1210 -------~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~ 1282 (2622)
+++...+.+.++ .++.+....||..+..++..+++....+.|++++|.+.+.+...+ ...++++..
T Consensus 73 ~~~~~l~~~~k~~ik~~ll-~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~------~~~~~~aL~ 145 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIV-PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD------MVTNKGVLT 145 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSC------TTHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 122233445554 444444589999999999888887666889999999998886532 234677777
Q ss_pred HHHHHhhhhcc--CC----cc----hHHHHHHH-------HHHcCCCCH---HHH------HHHHhhhHhhHhhh-c---
Q 000050 1283 FTGALAKHLAK--DD----PK----VHAVVDKL-------LDVLNTPSE---AVQ------RAVSSCLSPLMQSM-Q--- 1332 (2622)
Q Consensus 1283 ~~~~la~~l~~--~~----~~----v~~i~~~L-------~~~l~~~~~---~Vq------~~a~~~L~~lv~~~-~--- 1332 (2622)
.+..+.+.... .. +. +...++.+ ...+.++.. .++ ..+.+++..+.... .
T Consensus 146 ~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 146 VAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp HHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 77777765421 11 11 12222222 223554422 232 33444444332110 1
Q ss_pred -cchHHHHHHHHHHHhcC--------C--C----hHHHHHHHHHHHHHHhhhCccchhh--hcHHHHHHHHHhC----CC
Q 000050 1333 -DEAPTLVSRLLDQLMKS--------D--K----YGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLAD----RN 1391 (2622)
Q Consensus 1333 -~~~~~~i~~Ll~~L~~~--------~--~----~~~r~~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~l~~----~~ 1391 (2622)
+....+++.++..+... + + +..|+.+..++..++...+.. +.. ..+++.+.+.+.+ ..
T Consensus 226 ~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~-f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 226 EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDV-FGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcC
Confidence 12234444444444221 0 0 345777888888877654421 111 1344444444431 22
Q ss_pred CHHHHHHHHHHHHHHHHHh--cccch--hHHHHHH-HHHHHHcC----C-------------------CCHHHHHHHHHH
Q 000050 1392 SAKRREGALLAFECLCEKL--GRLFE--PYVIQML-PLLLVAFS----D-------------------QVVAVREAAECA 1443 (2622)
Q Consensus 1392 ~~~~R~~al~al~~La~~~--~~~~~--~~v~~il-p~ll~~l~----D-------------------~~~~VR~aa~~a 1443 (2622)
+...+..++..+..+++.- ...|. +++.+++ +.++..+. | ....+|.+|..+
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~ 384 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDF 384 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHH
Confidence 4566667777666665422 23454 7888888 67776552 1 112578899999
Q ss_pred HHHHHHhhcHHhHHhhHHHHHhhcc------CCChhhHHHHHHHHHHHHhhC--ch-hhhh-----hhhhh-HHHHhhhh
Q 000050 1444 ARAMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEVL 1508 (2622)
Q Consensus 1444 l~~i~~~l~~~~v~~ilp~Ll~~L~------~~~w~~r~~a~~~L~~la~~~--p~-~l~~-----~L~~i-vp~L~~~L 1508 (2622)
+..++...++..+..+++.+.+.+. +.+|+.|.+|+.++++++... +. .... .+..+ ...+...+
T Consensus 385 L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l 464 (960)
T 1wa5_C 385 LKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (960)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh
Confidence 9999988876666777777766665 678999999999999998632 11 1111 12222 23345556
Q ss_pred cCC---CHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhh
Q 000050 1509 TDT---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585 (2622)
Q Consensus 1509 ~D~---~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l 1585 (2622)
.|+ ++.||..|+++++++++.+....+.. +++.+.+++
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~---------------------------------------~l~~l~~~L 505 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE---------------------------------------LMPILATFL 505 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH---------------------------------------HHHHHHHHT
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCCHHHHHH---------------------------------------HHHHHHHHh
Confidence 777 99999999999999998653222233 445555556
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcC---------CCCcccchHhhhHHHHHHHhcCCC---H--HHHHHHHHHHHHHHhhhC
Q 000050 1586 RERSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---P--EVRSVAARAIGSLIRGMG 1651 (2622)
Q Consensus 1586 ~d~~~~vr~~a~~~l~~l~~~~~---------~~~~l~~~l~~ll~~L~~~L~d~~---~--~vR~~a~~aL~~L~~~~g 1651 (2622)
.+.+..+|..|+.++.+++.... ....+.||++.+++.+..++.... + .....+..+++.++...+
T Consensus 506 ~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~ 585 (960)
T 1wa5_C 506 QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE 585 (960)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence 66667889999999999887432 124588999999999999988741 1 144688999999999888
Q ss_pred CC---CchhhHHHHHHHhhh----cCChHHHHHHHHHHHHHHHHhchh----HHHhHhHHHHHhccCCChhhHHHHHHHH
Q 000050 1652 EE---NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2622)
Q Consensus 1652 ~~---~~~~ll~~Ll~~L~~----~~~~~~r~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~al~~l 1720 (2622)
++ +++.+++.+...+.. .+....+.....+++.++...+.+ ..+.++|.+...+........+.++..+
T Consensus 586 ~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 586 DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 76 455666666665543 233345556788888888875544 2356777777777666667888888888
Q ss_pred HHhhhhhCcchhhhHHhHHHHHH--hhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHH
Q 000050 1721 KYLPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2622)
Q Consensus 1721 ~~L~~~~g~~f~p~l~~ii~~ll--~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~l 1798 (2622)
..+.... ..|.+|+..++|.++ ..+.... .+ ....+.+..++...++. ++ . +.
T Consensus 666 ~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~----~~--------~--~~-------- 720 (960)
T 1wa5_C 666 AFVVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI----FP--------D--LV-------- 720 (960)
T ss_dssp HHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG----CS--------C--SH--------
T ss_pred HHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH----HH--------H--HH--------
Confidence 8888766 778888888998888 6665432 22 12233333322221110 00 0 00
Q ss_pred HHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhh
Q 000050 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2622)
Q Consensus 1799 l~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~ 1878 (2622)
.++..+.....+.. ....|..+++.++.+.|..
T Consensus 721 ---------------------------------------------~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~ 753 (960)
T 1wa5_C 721 ---------------------------------------------PVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMN 753 (960)
T ss_dssp ---------------------------------------------HHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHH
T ss_pred ---------------------------------------------HHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHH
Confidence 00000001111221 2367888999999988877
Q ss_pred -HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhccch-h--------hhHHH----HHhhhcCC-CChhhHHh
Q 000050 1879 -LKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERV-L--------PSIIP----ILSRGLKD-PSASRRQG 1942 (2622)
Q Consensus 1879 -l~~~l~~ll~~L~~~L~s~-~~~~R~~A~~~L~~lv~~~~~~~-l--------~~llp----~L~~~L~d-~~~~vR~~ 1942 (2622)
+.+|++.+++.++..+... ....+......++.++-..++.. . ..+.. .+...+.. .+...|.-
T Consensus 754 ~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~ 833 (960)
T 1wa5_C 754 RLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKI 833 (960)
T ss_dssp HHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHH
Confidence 9999999999999998755 45555455555555544444321 1 11122 22222222 34566777
Q ss_pred HHHHHHHHHHhhC--hhhHHHhHHhHHHHHHHHhc
Q 000050 1943 VCIGLSEVMASAG--KSQLLSFMDELIPTIRTALC 1975 (2622)
Q Consensus 1943 a~~~L~~li~~~~--~~~l~~~l~~ll~~l~~~L~ 1975 (2622)
++.++..++.... +....+.+..++..+...+.
T Consensus 834 ~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~ 868 (960)
T 1wa5_C 834 ALIGVLNMVINGQFFQSKYPTLISSTMNSIIETAS 868 (960)
T ss_dssp HHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHh
Confidence 8888888776430 22233445555555555443
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-17 Score=220.20 Aligned_cols=391 Identities=16% Similarity=0.237 Sum_probs=297.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh-----------
Q 000050 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG----------- 1649 (2622)
Q Consensus 1583 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~----------- 1649 (2622)
..+.+.+..+|+.|.+.+..+... + .+..+..+...+.+ ..+.+|..|+..|..++..
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~-----~----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVE-----N----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh-----C----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 344566789999999999886541 0 12344455555544 3689999999999998743
Q ss_pred ----hCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh-HHHhHhHHHHHhccCC--ChhhHHHHHHHHHH
Q 000050 1650 ----MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKY 1722 (2622)
Q Consensus 1650 ----~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~-~l~~llp~l~~~l~~~--~~~vR~~al~~l~~ 1722 (2622)
++++....+...++..+.++.+. + ..++.+++.++...+.. .+++++|.+++.+.+. ++.+|++++.+++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 22223344666677777766544 4 67888899998877654 6789999999999888 89999999999999
Q ss_pred hhhhh-CcchhhhHHhHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHhhhc----h-hhhhHHHHhhccCCCchHHHHH
Q 000050 1723 LPRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQS 1794 (2622)
Q Consensus 1723 L~~~~-g~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~lv~~~~~~----~-i~~llp~l~~~l~d~~~rvR~~ 1794 (2622)
++... +..+.+|.+.+++.+..++.|+ +..||..|++++..++...... . .+.+++.+.+.+.+.++.+|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99877 6678899999999999999998 7899999999998765432211 1 1335777777788889999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Q 000050 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~-~il~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2622)
+++.++.+....+... + ++.. .+++.+.....|.+..||..|++.|..++.
T Consensus 237 ~~~~l~~l~~~~~~~~---------------------------~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYM---------------------------E-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHCGGGC---------------------------T-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------------------H-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999999875532110 0 1112 344444445578889999999999999986
Q ss_pred hC---------------------hhhHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhccchhhhHH
Q 000050 1874 NT---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSII 1925 (2622)
Q Consensus 1874 ~~---------------------p~~l~~~l~~ll~~L~~~L~s-------~~~~~R~~A~~~L~~lv~~~~~~~l~~ll 1925 (2622)
.. ...++++++.++|.+++.+.+ .++..|..|..+|+.++...|+.+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~ 368 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 123445678888888888853 34679999999999999999988889999
Q ss_pred HHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-----h
Q 000050 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----A 2000 (2622)
Q Consensus 1926 p~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~-----~ 2000 (2622)
|.+...++++++.+|.+++.+++.+.....++.+.++++.++|.+...+.|+++.||..|+.+++.+....+.. .
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 99999999999999999999999987755545566788999999999999999999999999999999887753 3
Q ss_pred hhhhHHHHHHhc
Q 000050 2001 IDEIVPTLLHAL 2012 (2622)
Q Consensus 2001 ~~~ilp~Ll~~L 2012 (2622)
+++++|.|+..|
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 445555555444
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-17 Score=218.72 Aligned_cols=395 Identities=13% Similarity=0.144 Sum_probs=296.4
Q ss_pred hHhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000050 1132 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2622)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~--- 1207 (2622)
+..++..+.++|..+|+.|.+.|..+... .|+.+..++..+.+ . ..+..+|..++..|+.....
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~-------~-----~~~~~vR~~a~~~Lk~~i~~~~~ 70 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-------P-----GNSQVARVAAGLQIKNSLTSKDP 70 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc-------C-----CCChHHHHHHHHHHHHhccccch
Confidence 34677778899999999999999886543 45555444444431 0 23568999999999987532
Q ss_pred ------------hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHhcCCCCChhhhh
Q 000050 1208 ------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 1274 (2622)
Q Consensus 1208 ------------~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~-~~~~~llp~~~~~l~~~~~~~~~~~ 1274 (2622)
++++....+...++ ..+.+.++.| ..+..++..+....+. ..|+.++|.+.+.+.... .+.
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~----~~~ 144 (462)
T 1ibr_B 71 DIKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN----STE 144 (462)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT----CCH
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC----CCH
Confidence 23333334555554 5677777788 7788888887777655 479999999988887521 034
Q ss_pred hhhhHHHHHHHHHhhhhcc--CCcchHHHHHHHHHHcCCC--CHHHHHHHHhhhHhhHhhhccch-----HH-HHHHHHH
Q 000050 1275 LVREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRLLD 1344 (2622)
Q Consensus 1275 ~vr~~~~~~~~~la~~l~~--~~~~v~~i~~~L~~~l~~~--~~~Vq~~a~~~L~~lv~~~~~~~-----~~-~i~~Ll~ 1344 (2622)
.+|+++...++.+.+.... ..+....+++.+...+.++ +++||..+++|+..++....+.. .. +++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~- 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC- 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-
Confidence 6789999999999875422 3566788999999999998 79999999999988765443211 12 233333
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhhCccchh-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh------------
Q 000050 1345 QLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL------------ 1410 (2622)
Q Consensus 1345 ~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~------------ 1410 (2622)
.+..+.+...|..++.+|..++...+..... .. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3445567789999999999999876532111 12 5778877778776 7899999999999988753
Q ss_pred ---------cccchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhh
Q 000050 1411 ---------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1411 ---------~~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
...+.+++..++|.++..+.+ .+..+|.+|..+++.++..++...+..++|.+.+.+.+.+|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHH
Confidence 123456778999999998853 2457999999999999998886667888899999999999999
Q ss_pred HHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-----hhHHhHHHHHHhhc
Q 000050 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 1546 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~ilp~Ll~~l 1546 (2622)
|.+++.+++.+++++. +.+..+++.++|.+...++|+++.||.+|+++|+.+++.+++ +++..++|.|++.+
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999998654 667788899999999999999999999999999999988764 45667777776654
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-15 Score=214.96 Aligned_cols=753 Identities=10% Similarity=0.082 Sum_probs=418.4
Q ss_pred HHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------H
Q 000050 1048 NELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------D 1119 (2622)
Q Consensus 1048 ~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~ 1119 (2622)
.++..-.+.+++.++|+++++|++..|++|++.|++.... |....+...+. ..+.+..+|-+|. .
T Consensus 7 ~~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~ 79 (1049)
T 3m1i_C 7 LDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITR 79 (1049)
T ss_dssp GCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHh
Confidence 3444445567899999999999999999999999876311 22233333332 2345666776654 3
Q ss_pred HHHhcCCCCCCCh-HhHHHHhcCC---------CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCC
Q 000050 1120 IWDRYGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVD 1188 (2622)
Q Consensus 1120 ~w~~~~~~~~~~~-~~Ll~~l~~~---------~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 1188 (2622)
.|.....+.+..+ ..++..+.+. +..+|++.+++++.++. .||+.|++++..+.+... .
T Consensus 80 ~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~----~------ 149 (1049)
T 3m1i_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S------ 149 (1049)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT----T------
T ss_pred hCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc----c------
Confidence 5754332222224 5666666532 47899999999999975 588888888888887641 1
Q ss_pred CCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCC
Q 000050 1189 AGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS 1268 (2622)
Q Consensus 1189 ~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~ 1268 (2622)
+-..+..+..+|..+++.+.+-.. .+....-|....+ .+. ...+.+++.+...+... .
T Consensus 150 -~~~~~~~~l~~L~~l~eev~~~~~------------~~~~~~r~~~lk~----~l~----~~~~~i~~~~~~~l~~~-~ 207 (1049)
T 3m1i_C 150 -SVNVCENNMIVLKLLSEEVFDFSA------------EQMTQAKALHLKN----SMS----KEFEQIFKLCFQVLEQG-S 207 (1049)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCT------------TTSCHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHC-C
T ss_pred -ChHHHHHHHHHHHHHHHHHHHhcc------------hhhhhHHHHHHHH----HHH----HHHHHHHHHHHHHHHhc-C
Confidence 113466777788877754322100 0011111111111 111 12455566666666532 1
Q ss_pred ChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhh-ccc-------hHHHHH
Q 000050 1269 DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVS 1340 (2622)
Q Consensus 1269 ~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~-~~~-------~~~~i~ 1340 (2622)
...++..+...++....+.+........+++.+.+.+. .+++++..+.+|+..++... .+. ...+++
T Consensus 208 ----~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~ 282 (1049)
T 3m1i_C 208 ----SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQ 282 (1049)
T ss_dssp ----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHH
Confidence 13455555555544433332100000113343442111 26889999999998887552 111 112223
Q ss_pred HHHHHHhc---------------C--CChHHHHHHHHHHHHHHhhhC-----ccchhh--hcHHHHHHHHHhCCCCHHHH
Q 000050 1341 RLLDQLMK---------------S--DKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRR 1396 (2622)
Q Consensus 1341 ~Ll~~L~~---------------~--~~~~~r~~Aa~~L~~l~~~lg-----~~~l~~--~~i~~~L~~~l~~~~~~~~R 1396 (2622)
.+++.+.. . .+.......+..+..+..... ...... ..+++.+....... +..++
T Consensus 283 ~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~ 361 (1049)
T 3m1i_C 283 NTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELF 361 (1049)
T ss_dssp HHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHH
T ss_pred HHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHH
Confidence 33332211 1 122233344444443332211 000110 13566666666665 67778
Q ss_pred HHHHHHHHHHHHHh------cccchhHHHHHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHH
Q 000050 1397 EGALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMM 1448 (2622)
Q Consensus 1397 ~~al~al~~La~~~------~~~~~~~v~~ilp~ll~~l~D~-------------------~---~~VR~aa~~al~~i~ 1448 (2622)
..++..+..+++.. ...+.+++.++++.++..+.-+ + ...|.++.+++..+.
T Consensus 362 ~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~ 441 (1049)
T 3m1i_C 362 KTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLT 441 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHH
Confidence 88887777877732 2456788899999988876311 0 145677788888887
Q ss_pred HhhcHHhHHhhHHHHHhhcc--CCChhhHHHHHHHHHHHHhhCchhhh-hhhhhhHHHHhhhhc-----CCCHHHHHHHH
Q 000050 1449 SQLSAQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQ 1520 (2622)
Q Consensus 1449 ~~l~~~~v~~ilp~Ll~~L~--~~~w~~r~~a~~~L~~la~~~p~~l~-~~L~~ivp~L~~~L~-----D~~~~VR~aA~ 1520 (2622)
...+...+..+++.+-+.+. +.+|+.+.+++.++|+++.+...... ..++.+++.+..+.. |+++.||..++
T Consensus 442 ~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~ 521 (1049)
T 3m1i_C 442 HLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIM 521 (1049)
T ss_dssp HHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Confidence 55554455666666656664 46899999999999999987655533 447888888777543 46788888899
Q ss_pred HHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHH
Q 000050 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2622)
Q Consensus 1521 ~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l 1600 (2622)
++++++++.+.+. ...+..+++.+..++.+.++.++..|+.++
T Consensus 522 ~~lgry~~~~~~~-------------------------------------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al 564 (1049)
T 3m1i_C 522 YVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACDTF 564 (1049)
T ss_dssp HHHHHCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH-------------------------------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999998765321 012233555566666777788889999999
Q ss_pred HHhhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC-CCchhhHHHHHHHhhhcCChH
Q 000050 1601 GNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNV 1673 (2622)
Q Consensus 1601 ~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~-~~~~~ll~~Ll~~L~~~~~~~ 1673 (2622)
.+++..... +.++.||++.++..+...+.+...+-+....++++.++...|+ +....++..++..+.
T Consensus 565 ~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~------ 638 (1049)
T 3m1i_C 565 IKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN------ 638 (1049)
T ss_dssp HHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHH------
T ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH------
Confidence 888875421 1233599999999999999887777788889999999987763 222223322222111
Q ss_pred HHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC-Chh-hHH--HHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCC
Q 000050 1674 ERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VRD--GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749 (2622)
Q Consensus 1674 ~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~-vR~--~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~ 1749 (2622)
+.+..+.. ...+..... +++ .+. ..+.++..++..+|..|.|++..+++.++..+..
T Consensus 639 ------~~~~~~~~------------~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~- 699 (1049)
T 3m1i_C 639 ------MAWDTIVE------------QSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA- 699 (1049)
T ss_dssp ------HHHHHHHH------------HHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH-
T ss_pred ------HHHHHHHH------------HHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-
Confidence 00111110 000000000 111 121 3356778888999999999988777765432211
Q ss_pred ChHHHHHHHHHHHHHHHHhhhc--------hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCC
Q 000050 1750 NESVRDAALGAGHVLVEHYATT--------SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDD 1821 (2622)
Q Consensus 1750 ~~~VR~~al~al~~lv~~~~~~--------~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dd 1821 (2622)
. ...+...+...+.. ....+.|.+ ..++..+....
T Consensus 700 ------~-~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l---------------~~ll~~~~~~~--------------- 742 (1049)
T 3m1i_C 700 ------V-SSMISAQVAAEGLIATKTPKVRGLRTIKKEI---------------LKLVETYISKA--------------- 742 (1049)
T ss_dssp ------H-HHHHHHHHHHHCGGGGGSHHHHHHHHHHHHH---------------HHHHHHHHHHC---------------
T ss_pred ------H-HHHHHHHHHccCchhhhhHHHHHHHHHHHHH---------------HHHHHHHHHhC---------------
Confidence 0 00011101000110 001111111 11222222110
Q ss_pred CcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHh----c-
Q 000050 1822 EGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISSL----A- 1895 (2622)
Q Consensus 1822 e~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR-~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L----~- 1895 (2622)
...+.. .. .+.+.++..+...........| ..++.+++.++...+..+.++++.+++.+..+. .
T Consensus 743 --~~l~~~---~~-----~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~ 812 (1049)
T 3m1i_C 743 --RNLDDV---VK-----VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK 812 (1049)
T ss_dssp --SCHHHH---HH-----HTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS
T ss_pred --CCHHHH---HH-----HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 000000 00 0111121111111000000000 246677777777666667777777777766653 2
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhh
Q 000050 1896 --SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2622)
Q Consensus 1896 --s~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~ 1954 (2622)
+.++++|......++.+++.....+ +..++.....++..+++.+...++..+.+++...
T Consensus 813 ~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 813 DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred chhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 4578999999999999998765443 2334444555677788888888888777776643
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-14 Score=192.87 Aligned_cols=675 Identities=12% Similarity=0.085 Sum_probs=423.5
Q ss_pred CChhhHHHHHHHHHHhhhh-hCcchhhhHHhHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhhchh---hh-hHHHHh
Q 000050 1708 QRASVRDGYLTLFKYLPRS-LGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSL---PL-LLPAVE 1781 (2622)
Q Consensus 1708 ~~~~vR~~al~~l~~L~~~-~g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~lv~~~~~~~i---~~-llp~l~ 1781 (2622)
.+.+-|+.|+.-+..|++. .|.+. =|-..-+..+.+.+.. .++++.-+|++.+..+++....... .. =.|.+.
T Consensus 20 ~~~~~~~~a~~nl~vl~re~aga~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~ 98 (810)
T 3now_A 20 TPIDKRRAAANNLVVLAKEQTGAEL-LYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFM 98 (810)
T ss_dssp CSSHHHHHHHHHHHHHSSCHHHHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred cCHHHHHHHHhhceeeeccccchHH-HHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHH
Confidence 4556677777777666643 22211 1112234556666666 6789999999999988876533321 11 245666
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc--CCCHH
Q 000050 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLS 1859 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~--D~~~~ 1859 (2622)
+.+..++..+-.+++.++..++..++|...+.. .-.|+ +++..- ....+.++..|..... -.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 99 RVLDQKHENCVSTAQFCLQTILNALSGLKNKPD----SKPDK--------ELCTRN-NREIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTT----CCCCH--------HHHHHT-HHHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhccccccc----cCCcH--------HHHhhh-hhHHHHHHHHHHHHhhccccChh
Confidence 777777888888888899998888765422111 00111 121111 1122344444444433 35788
Q ss_pred HHHHHHHHHHHHHhhCh-hhHHHHHH-HHHHHHHHHhc---CC--------CHHHHHHHHHHHHHHHHHhc-----cchh
Q 000050 1860 VRQAALHVWKTIVANTP-KTLKEIMP-VLMNTLISSLA---SS--------SSERRQVAGRALGELVRKLG-----ERVL 1921 (2622)
Q Consensus 1860 VR~aA~~~l~~l~~~~p-~~l~~~l~-~ll~~L~~~L~---s~--------~~~~R~~A~~~L~~lv~~~~-----~~~l 1921 (2622)
.|.++++.+-.-+.... +....++. .-+..++.... +. ..+.|..+.-++.++.+.++ +.+.
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~ 245 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFT 245 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 99999999877664331 11111111 11222222222 11 45799999999999998887 3344
Q ss_pred hhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh-HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh
Q 000050 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2622)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~-l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2622)
..+-..+...+...+.+.+..++.++..++.......-.-+ ....++.+..++..+++.++..|..+++.+... ...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~ 323 (810)
T 3now_A 246 DQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--KDK 323 (810)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHH
T ss_pred HHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHH
Confidence 44555555566677888888899999988653322111122 257889999999999999999999999886432 211
Q ss_pred h----hhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCC-----Chh-h
Q 000050 2001 I----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP-----GLN-F 2070 (2622)
Q Consensus 2001 ~----~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~-----~l~-~ 2070 (2622)
. +.-+|.|...+.+++.. ++.+++.+|..++...+. .+. .
T Consensus 324 R~~I~~~gv~~L~~Ll~s~~~~------------------------------vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 324 AKALCEQGVDILKRLYHSKNDG------------------------------IRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHTTHHHHHHHHHHHTTCSCHH------------------------------HHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHHHHHcCcHHHHHHHcCCCHH------------------------------HHHHHHHHHHHhccccccCccccchhhc
Confidence 1 11235555555433311 011222333333321121 111 1
Q ss_pred hHhhhHHHHHHhcCCC--CHHHHHHHHHHHHHhhhccCh-hc-H--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 000050 2071 HLGTILPALLSAMGDD--DMDVQSLAKEAAETVTLVIDE-EG-V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2622)
Q Consensus 2071 ~l~~il~~Ll~~l~~~--~~~vr~~a~~al~~l~~~~~~-~~-l--~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~ 2144 (2622)
-+..+++.+.+.|.++ +++++..+.+++..+....+. .. . ..+++.|++.+++++..++..++.+|+.++....
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 2467788888888766 789999999999988653321 11 2 3588888999888899999999999999987431
Q ss_pred c-----------cccc-------------cH---------HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhh
Q 000050 2145 L-----------YLVD-------------EA---------PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 2191 (2622)
Q Consensus 2145 ~-----------~l~~-------------~~---------~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~ 2191 (2622)
. .+.. +. ...++.|+.++..+++.++..|..+|..++... +
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~--~---- 527 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK--E---- 527 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH--H----
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--H----
Confidence 0 0100 11 146888999999999999999999999997431 1
Q ss_pred HHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhh--hhh
Q 000050 2192 YIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK--EFV 2269 (2622)
Q Consensus 2192 lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~--p~v 2269 (2622)
.++.+.. ...+|.|+..+.++++..|+.|+.+|+.++....++..- ..+
T Consensus 528 ----~r~~Vv~-------------------------~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 528 ----LRGKVVQ-------------------------EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp ----HHHHHHH-------------------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred ----HHHHHHH-------------------------CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 1121111 115778888888899999999999999999776543321 123
Q ss_pred hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccC-ch-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC-
Q 000050 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP-FL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR- 2346 (2622)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p-~l-~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~- 2346 (2622)
...++||+..+....+...+..++.+|..|+...+. .+. .+ ...++.+...+.++++.+|..|+.+++.|+.....
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 457899999997533334456789999988753211 110 00 12355677777888999999999999999653211
Q ss_pred ---h--hhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000050 2347 ---V--DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK--IRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2622)
Q Consensus 2347 ---~--~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~--~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2622)
+ ...++.|+..+...+..+|..+.+||..+........ .... ...++.|..++.+.+..++..++.+++.++
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 1 2467788888888889999999999999986321111 1222 246678888899999999999999999988
Q ss_pred hhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcc---CChhHHHhHHHHH
Q 000050 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD---EKFPLREASTKAL 2496 (2622)
Q Consensus 2420 ~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~---~~~~ir~~a~~al 2496 (2622)
... + +.. ..+.+ . .+++.|+..++. .+..+++.|..|+
T Consensus 737 ~~s-~-e~~---~~l~e------------------------------~----G~i~~L~~LL~~~d~~~~~i~e~Al~aL 777 (810)
T 3now_A 737 NAG-E-EIA---KKLFE------------------------------T----DIMELLSGLGQLPDDTRAKAREVATQCL 777 (810)
T ss_dssp TTC-H-HHH---HHHHT------------------------------S----THHHHHTTSCCCTTSTTHHHHHHHHHHH
T ss_pred hCC-H-HHH---HHHHH------------------------------C----CCHHHHHHHHhCcccCcHHHHHHHHHHH
Confidence 632 1 111 11110 1 123444444433 3688999999999
Q ss_pred HHHHhhhh
Q 000050 2497 GRLLLHQI 2504 (2622)
Q Consensus 2497 g~ll~~~~ 2504 (2622)
..++....
T Consensus 778 ~~ll~~g~ 785 (810)
T 3now_A 778 AAAERYRI 785 (810)
T ss_dssp HHHHHHHT
T ss_pred HHHHhCCC
Confidence 99988864
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-13 Score=194.11 Aligned_cols=696 Identities=11% Similarity=0.078 Sum_probs=406.8
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----h
Q 000050 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG----M 1650 (2622)
Q Consensus 1576 ~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~----~ 1650 (2622)
.+...+.....+.+++.|+.|.+.+..+-.. | + ..+.+..++. +.++.+|..|+..|...+.. +
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~---p-~-------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l 93 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVS---P-Q-------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI 93 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS---T-T-------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---H-H-------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence 3444444434456788999999999887552 1 1 2233334443 56789999999999998864 2
Q ss_pred CCCCchhhHHHHHHHhhhc--CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccC-----CChhhHHHHHHHHHHh
Q 000050 1651 GEENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFKYL 1723 (2622)
Q Consensus 1651 g~~~~~~ll~~Ll~~L~~~--~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-----~~~~vR~~al~~l~~L 1723 (2622)
.++....+-..+++.+... .+..+|...+.+++.++.....+.|+++++.+++.+++ +++..++.++.+|..+
T Consensus 94 ~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 94 PTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp CGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence 3333444555556655442 24668889999999999887666788899999988765 3566788999999888
Q ss_pred hhhh-------------CcchhhhHHhHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHHhhhchh--hhhHHHHhhccCC
Q 000050 1724 PRSL-------------GVQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGIFN 1786 (2622)
Q Consensus 1724 ~~~~-------------g~~f~p~l~~ii~~ll~~L~d~~~--~VR~~al~al~~lv~~~~~~~i--~~llp~l~~~l~d 1786 (2622)
+... ...+..+++.+++.+...+.+... .++..+++++...+. .+.... ..+++.+.+.+.
T Consensus 174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~- 251 (963)
T 2x19_B 174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ- 251 (963)
T ss_dssp HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT-
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC-
Confidence 8533 122344556666666666554322 245555554433322 111111 223333333331
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHH
Q 000050 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866 (2622)
Q Consensus 1787 ~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~ 1866 (2622)
+|..|..+++++..
T Consensus 252 -~~~~~~~a~~~l~~----------------------------------------------------------------- 265 (963)
T 2x19_B 252 -DSELFDSSVEAIVN----------------------------------------------------------------- 265 (963)
T ss_dssp -STTTHHHHHHHHHH-----------------------------------------------------------------
T ss_pred -CchHHHHHHHHHHH-----------------------------------------------------------------
Confidence 34444444444444
Q ss_pred HHHHHHhhC-hhhHHHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHHhc---------cchhhhHHHHHh
Q 000050 1867 VWKTIVANT-PKTLKEIMPVLMNTLIS-------SLASSSSERRQVAGRALGELVRKLG---------ERVLPSIIPILS 1929 (2622)
Q Consensus 1867 ~l~~l~~~~-p~~l~~~l~~ll~~L~~-------~L~s~~~~~R~~A~~~L~~lv~~~~---------~~~l~~llp~L~ 1929 (2622)
++... +....+++..+++.++. .+...+.+.....++.+..+.+... ...+..+++.+.
T Consensus 266 ----i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll 341 (963)
T 2x19_B 266 ----AISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIM 341 (963)
T ss_dssp ----HHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ----HHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHH
Confidence 44321 11111122222221111 1122233322233333333332111 112334555555
Q ss_pred hhcCC-----CChhhHHhHHHHHHHHHHhh----------ChhhHHHhHHhHHHHHHHHhcCCcH---------------
Q 000050 1930 RGLKD-----PSASRRQGVCIGLSEVMASA----------GKSQLLSFMDELIPTIRTALCDSIL--------------- 1979 (2622)
Q Consensus 1930 ~~L~d-----~~~~vR~~a~~~L~~li~~~----------~~~~l~~~l~~ll~~l~~~L~d~d~--------------- 1979 (2622)
..... .+.++...++.....++... ....+.+++..+++.+...+..++.
T Consensus 342 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~ 421 (963)
T 2x19_B 342 FCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421 (963)
T ss_dssp HHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHH
Confidence 54443 34556666665555544421 1233456777788877776642211
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCC--CchHHHHHH
Q 000050 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP--LSAFNAHAL 2057 (2622)
Q Consensus 1980 ~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~--~~~~~~~aL 2057 (2622)
+.|..+..++..+....|....+.+++.+-..+.... .... .......++
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------------------~~~~w~~~eaal~al 473 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE----------------------------EPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC----------------------------CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC----------------------------CCCchHHHHHHHHHH
Confidence 1234444555555544443333333333222221000 0000 011234567
Q ss_pred HHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccC--hhcHHHHHHHHHhhcCCCChhHHHHHHHH
Q 000050 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSSAYL 2135 (2622)
Q Consensus 2058 ~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~ 2135 (2622)
+++++.......++++.+++.+. .+.++++.+|..++++++.+...+. .+.+..+++.++..+.+ +.+|..|+.+
T Consensus 474 ~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~a 550 (963)
T 2x19_B 474 QSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVST 550 (963)
T ss_dssp HHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHH
T ss_pred HHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHH
Confidence 77776555555677788887544 4455678899999999998876543 35688889999988865 8999999999
Q ss_pred HHHHHhhccccccccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCcc----chhhHHHHHHHHHhhchhhhhh
Q 000050 2136 IGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKE----VQPSYIKVIRDAISTSRDKERR 2209 (2622)
Q Consensus 2136 L~~l~~~~~~~l~~~~~~il~~L~~~l~d--~d~~V~~~a~~aL~~l~~~~~~~----~l~~lv~~l~~~l~~~~~~~~~ 2209 (2622)
+..+++..+..+.+|+++++..+...++. .+...+..+.++++.++...+.+ ++..++.++.+.+...
T Consensus 551 l~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~------ 624 (963)
T 2x19_B 551 LKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL------ 624 (963)
T ss_dssp HHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999988888999999999999998874 45788999999999998766521 2222333332222211
Q ss_pred hhcCCccccccCCCCcCchhhHHHHHHHHccC-CHHHH---HHHHHHHHHHHhhcCh---------------------hh
Q 000050 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELR---EQAALGLGELIEVTSE---------------------QS 2264 (2622)
Q Consensus 2210 ~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~-~~~~r---~~aa~~L~~l~~~~~~---------------------~~ 2264 (2622)
..+. +++.+ .....+|+.++...+. ..
T Consensus 625 ----------------------------~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (963)
T 2x19_B 625 ----------------------------AEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNP 676 (963)
T ss_dssp ----------------------------HSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCH
T ss_pred ----------------------------HhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCc
Confidence 1111 22222 2455666666665441 12
Q ss_pred hhhhhhhhhHHHHHhhcCC-CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHh
Q 000050 2265 LKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2265 l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~ 2342 (2622)
+.++...+.+.+.+++... .+..+...++.+++.++...|..+.||+|.+.+.++...... ... ....++.++.
T Consensus 677 ~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~ 752 (963)
T 2x19_B 677 VVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVH 752 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccH----HHHHHHHHHH
Confidence 4556667777766666431 256789999999999999999999999999998888766542 222 2233343322
Q ss_pred ---ccc----ChhhHHHHHHHh----hh-c--CCHhHHHHHHHHHHHHHhhcCCCC-ChHH-HHHHHHHHHHhhcCCCHH
Q 000050 2343 ---LST----RVDPLVGDLLSS----LQ-V--SDAGIREAILTALKGVLKHAGKSV-SSAV-KIRVYSVLKDLVYHDDDH 2406 (2622)
Q Consensus 2343 ---~~~----~~~~ll~~Ll~~----l~-~--~d~~vr~~~l~AL~~vi~~~g~~~-~~~~-~~~i~~~L~~~l~~~~~~ 2406 (2622)
..+ .++.++..++.. ++ + .+++++...+..+..++..+...+ ..+. ...++..+...+.+.+..
T Consensus 753 ~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 832 (963)
T 2x19_B 753 IFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAP 832 (963)
T ss_dssp HHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHH
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHH
Confidence 122 233333333332 22 2 258999999999999998876543 2343 677888888888888888
Q ss_pred HHHHHHHHHHHHHhhcC
Q 000050 2407 VRVSAASILGIMSQCME 2423 (2622)
Q Consensus 2407 vr~~aa~~Lg~L~~~~~ 2423 (2622)
+...+...+..+....+
T Consensus 833 ~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 833 TVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 88888888888776543
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-13 Score=186.78 Aligned_cols=677 Identities=13% Similarity=0.057 Sum_probs=425.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccch---h-hhHHHHH
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERV---L-PSIIPIL 1928 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~-~ll~~L~~~L~s-~~~~~R~~A~~~L~~lv~~~~~~~---l-~~llp~L 1928 (2622)
..+.+-|+.|+.-+-.++..... -..++. ..+..+...+.+ .+++....|.++|+++|....... + .-=.|.+
T Consensus 19 ~~~~~~~~~a~~nl~vl~re~ag-a~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~ 97 (810)
T 3now_A 19 ATPIDKRRAAANNLVVLAKEQTG-AELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWF 97 (810)
T ss_dssp CCSSHHHHHHHHHHHHHSSCHHH-HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred ccCHHHHHHHHhhceeeeccccc-hHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHH
Confidence 44556788888877777653221 122222 224455555665 789999999999999997643332 1 1224566
Q ss_pred hhhcCCCChhhHHhHHHHHHHHHHhhChh--------------hHHHhHHhHHHHHHHHhcCC--cHHHHHHHHHHHHHH
Q 000050 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKS--------------QLLSFMDELIPTIRTALCDS--ILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1929 ~~~L~d~~~~vR~~a~~~L~~li~~~~~~--------------~l~~~l~~ll~~l~~~L~d~--d~~VR~~A~~al~~l 1992 (2622)
...+..++++.-.++|..+..++....+. .-...++.++..+...+.+. ....|+++...+-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~-- 175 (810)
T 3now_A 98 MRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELIT-- 175 (810)
T ss_dssp HHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH--
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHH--
Confidence 66777788888889998888877655321 11235677888888888776 5778888766554
Q ss_pred HHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCC-hhhh
Q 000050 1993 FKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LNFH 2071 (2622)
Q Consensus 1993 ~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~-l~~~ 2071 (2622)
++........ ...+.. ...+..+-.+.+.-.+...+.-+| .....+...+-++..+-+..+.+ -...
T Consensus 176 -~~~~~~~~~~-~~~~~~--------~~g~~~~l~v~~~~~~~~~~~~~~--~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 243 (810)
T 3now_A 176 -RNVHYTALEW-AERLVE--------IRGLCRLLDVCSELEDYKYESAMD--ITGSSSTIASVCLARIYENMYYDEAKAR 243 (810)
T ss_dssp -HHTTCTTTTH-HHHHHH--------TTHHHHHHHHHTCCSSSCCSSCCC--CCTTHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred -HhCCcccccc-ccchhh--------HhhHHHHHHHHhcCccccccccCC--CChhHHHHHHHHHHHHHHHhccchhHHH
Confidence 3333221110 001111 123444444443211111111111 01122223444555555544422 1233
Q ss_pred HhhhHHHHHHh-cCCCCHHHHHHHHHHHHHhhhccChhc-----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 000050 2072 LGTILPALLSA-MGDDDMDVQSLAKEAAETVTLVIDEEG-----VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL 2145 (2622)
Q Consensus 2072 l~~il~~Ll~~-l~~~~~~vr~~a~~al~~l~~~~~~~~-----l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~ 2145 (2622)
+...+..++.. +...+.+....+.+++..++....+.+ -...++.++..+.+++..++..|+++++..+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~-- 321 (810)
T 3now_A 244 FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-- 321 (810)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSH--
T ss_pred HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCc--
Confidence 44444444443 456666667778888888876443211 2357788888888999999999999999986542
Q ss_pred cccccH-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCC
Q 000050 2146 YLVDEA-PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224 (2622)
Q Consensus 2146 ~l~~~~-~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~ 2224 (2622)
+...++ ..-++.|..++.+.+..++..|..+|..+......+. ..+.|. .
T Consensus 322 ~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~----------------------------~~~~~~-~ 372 (810)
T 3now_A 322 DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDA----------------------------AIRPFG-D 372 (810)
T ss_dssp HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTT----------------------------SCCSST-T
T ss_pred HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCc----------------------------cccchh-h
Confidence 111111 1223788888888888888888888877753211000 011111 1
Q ss_pred cCchhhHHHHHHHHccC--CHHHHHHHHHHHHHHHhhcChhhhhhh-h--hhhhHHHHHhhcCCCCHhhHHHHHHHHHHH
Q 000050 2225 KALQPLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEF-V--IPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2622)
Q Consensus 2225 ~~l~~ilp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~-v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2622)
..+.+++|.|.+.|.++ +.+++..|+.+|+.++... ..+.. + ..++++|+..+... +..+...++.+|+.|
T Consensus 373 g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~---~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~NL 448 (810)
T 3now_A 373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA---ECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVNL 448 (810)
T ss_dssp THHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH---HHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc---HHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHHH
Confidence 23567889999999887 7899999999999998643 22222 2 35778899998864 678999999999999
Q ss_pred HHhcCCC------------ccC------------chH---------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC
Q 000050 2300 IRKGGIA------------LKP------------FLP---------QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR 2346 (2622)
Q Consensus 2300 ~~~~~~~------------l~p------------~l~---------~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~ 2346 (2622)
....+.. .+. +.. ...+.|+..+.++++.+|..|+.+|+.++.....
T Consensus 449 t~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~ 528 (810)
T 3now_A 449 CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKEL 528 (810)
T ss_dssp TTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHH
T ss_pred cCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 8743210 001 111 3577899999999999999999999999753222
Q ss_pred h-----hhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Q 000050 2347 V-----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHD-DDHVRVSAASILGIM 2418 (2622)
Q Consensus 2347 ~-----~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~-~~~vr~~aa~~Lg~L 2418 (2622)
. ...++.|+..+++++...|..+.+||..+........ .......+++.|..++.+. +...+..++.+|+.|
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NL 608 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 1 2357888999988888999999999999886533211 1111233677777888754 434455788899998
Q ss_pred HhhcCchHHHH-----HHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhH--HHHHHHHHhhhccCChhHHHh
Q 000050 2419 SQCMEDGQLAD-----LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLF--LSILDRLKSSLKDEKFPLREA 2491 (2622)
Q Consensus 2419 ~~~~~~~~~~~-----~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~--~~i~~~l~~~~~~~~~~ir~~ 2491 (2622)
+...+ +.... .++.+.+.+.+++...+..++.+++.+... ++.. ..+. ...++.|...+.+++..+|..
T Consensus 609 a~~~d-~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~--~~~v~~~g~l~~Lv~LL~s~d~~vq~~ 684 (810)
T 3now_A 609 ASMNE-SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVI--KMFEGNNDRVKFLALLCEDEDEETATA 684 (810)
T ss_dssp TTSCH-HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHH--HHHHSSSSHHHHHHHGGGCSSHHHHHH
T ss_pred hcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHH--HHHHhccCcHHHHHHHhcCCCHHHHHH
Confidence 86532 22111 122232322344445666667777766542 2211 0111 146778888899999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCchhh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hhHHHHHHhhh
Q 000050 2492 STKALGRLLLHQIQSGPANTTVV---VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECL 2566 (2622)
Q Consensus 2492 a~~alg~ll~~~~~~~~~~~~~l---~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~ 2566 (2622)
|..|++.+..+.... ...+ ...+++++..+.+++.++|..|+.+|..++...++. ..++ ...+|+|.+.+
T Consensus 685 Aa~ALanLt~~s~~~----~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~-~~~l~e~G~i~~L~~LL 759 (810)
T 3now_A 685 CAGALAIITSVSVKC----CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI-AKKLFETDIMELLSGLG 759 (810)
T ss_dssp HHHHHHHHHHHCHHH----HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH-HHHHHTSTHHHHHTTSC
T ss_pred HHHHHHHHhCCCHHH----HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHCCCHHHHHHHH
Confidence 999999998742211 0122 247889999999999999999999999999865543 3333 45899999998
Q ss_pred cCC---cchhhchhHHHHHHHhccccc
Q 000050 2567 KDG---STPVRLAAERCAVHAFQLTRG 2590 (2622)
Q Consensus 2567 ~~~---~~~vk~aae~a~~~~~~~~~~ 2590 (2622)
+.+ +..+...|..|+-.+++.-.-
T Consensus 760 ~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 760 QLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred hCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 755 678888888888888776554
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-13 Score=201.24 Aligned_cols=696 Identities=10% Similarity=0.057 Sum_probs=393.8
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHH
Q 000050 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWL 1662 (2622)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~----~g~~~~~~ll~~L 1662 (2622)
.+...|+.|.+.+..+-.. +...+.+..++. +.++.+|..|+..|...+.. +.++....+-..+
T Consensus 19 ~d~~~r~~A~~~L~~~~~~-----------p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEAS-----------PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp STTTC----CHHHHHTTTS-----------THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 3455677787777765331 122333444443 46789999999999988864 2333334445555
Q ss_pred HHHhhhc--CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC------ChhhHHHHHHHHHHhhhhhC-cc---
Q 000050 1663 LDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ------RASVRDGYLTLFKYLPRSLG-VQ--- 1730 (2622)
Q Consensus 1663 l~~L~~~--~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~------~~~vR~~al~~l~~L~~~~g-~~--- 1730 (2622)
++.+... .+..+|...+.+++.++..... .|.++++.+.+.+++. ++..++.++..|..++.... ..
T Consensus 88 l~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 88 LESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 5555442 2456888999999999888766 7888888888887654 56678888888887774321 10
Q ss_pred --------hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhh-ccCCCchHHHHHHHHHHHH
Q 000050 1731 --------FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGD 1801 (2622)
Q Consensus 1731 --------f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~-~l~d~~~rvR~~a~~ll~~ 1801 (2622)
+..+++.+++.+...+. .... ...+.+|.++..++++++.
T Consensus 167 ~r~~~~~~l~~~~~~vl~ll~~~l~-------------------------------~~~~~~~~~~~~~~~~~al~~l~~ 215 (971)
T 2x1g_F 167 KRVVLRAEIAKRVQLVIHTVERYLK-------------------------------LQMNRVWDAEAYSNMNRAVKCVGT 215 (971)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHH-------------------------------HHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------cccCCCCCccchhHHHHHHHHHHH
Confidence 01111111111111110 0000 0011135677777777777
Q ss_pred HHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHH---------------hccCCCHHHHHHHHH
Q 000050 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM---------------VRSDVSLSVRQAALH 1866 (2622)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~---------------~~~D~~~~VR~aA~~ 1866 (2622)
++.. .+.. .+ .. ..+++.++. +..+.+..+|+.|++
T Consensus 216 ~~~~-~~ip-----------~~-~~----------------~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 266 (971)
T 2x1g_F 216 WIKN-IGYT-----------IE-GC----------------VTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLK 266 (971)
T ss_dssp HHHH-SCCC-----------GG-GH----------------HHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHH
T ss_pred HHhh-CCcC-----------cc-cc----------------ccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHH
Confidence 6642 0000 00 00 112222221 012245689999999
Q ss_pred HHHHHHhhCh-----hhHHHHHHHHHHHHH---HHhcCCCH---HHHHHHHHHHHHHHHHh----c----------cchh
Q 000050 1867 VWKTIVANTP-----KTLKEIMPVLMNTLI---SSLASSSS---ERRQVAGRALGELVRKL----G----------ERVL 1921 (2622)
Q Consensus 1867 ~l~~l~~~~p-----~~l~~~l~~ll~~L~---~~L~s~~~---~~R~~A~~~L~~lv~~~----~----------~~~l 1921 (2622)
++..++...+ ..+..+++.++...- ....+.+. +.....++.+..+.+.. . ...+
T Consensus 267 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 346 (971)
T 2x1g_F 267 TMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV 346 (971)
T ss_dssp HHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH
Confidence 9999997432 123333333333221 12233342 55555566666555321 1 1123
Q ss_pred hhHHHHHhhhcC-----CCChhhHHhHHHHHHHHHHhh-----------ChhhHHHhHHhHHHHHHHHhcCC--------
Q 000050 1922 PSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASA-----------GKSQLLSFMDELIPTIRTALCDS-------- 1977 (2622)
Q Consensus 1922 ~~llp~L~~~L~-----d~~~~vR~~a~~~L~~li~~~-----------~~~~l~~~l~~ll~~l~~~L~d~-------- 1977 (2622)
..+++.+..... ..+.++...++..+..+.... ....+.+++..+++.+...+.-+
T Consensus 347 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~ 426 (971)
T 2x1g_F 347 HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW 426 (971)
T ss_dssp HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS
T ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 345555555432 246778888887766654421 11344677788888877766311
Q ss_pred cH-------HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCc
Q 000050 1978 IL-------EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2622)
Q Consensus 1978 d~-------~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~ 2050 (2622)
++ ..|..+..++..++...|...++.+++.+-+.+.... .+ + .+....
T Consensus 427 d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------~~---~------~~w~~~ 481 (971)
T 2x1g_F 427 SSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQ----------------RH---P------THWTKL 481 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH----------------HC---T------TCCHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc----------------CC---C------CcHHHH
Confidence 11 3455566666665555553333333333332221100 00 0 000011
Q ss_pred hHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcC--CCCHHHHHHHHHHHHHhhhccC--hhcHHHHHHHHHhhcCCCCh
Q 000050 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMG--DDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQA 2126 (2622)
Q Consensus 2051 ~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~--~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~d~~~ 2126 (2622)
..+..+++++++.......++++.+++ ++..+. +.++.+|..++++++.+...+. .+.+..+++.++..+ + +
T Consensus 482 eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~ 557 (971)
T 2x1g_F 482 EACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--S 557 (971)
T ss_dssp HHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--S
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--h
Confidence 123455666666544444577888888 444444 4589999999999999887654 367899999999988 4 8
Q ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCccc----hhhHHHHHHHHH
Q 000050 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV----QPSYIKVIRDAI 2200 (2622)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d--~d~~V~~~a~~aL~~l~~~~~~~~----l~~lv~~l~~~l 2200 (2622)
.++..|+.++..+++..+..+.+|++.++..+...++. .+...+..+.++++.++...+.+. +..++.++.+.+
T Consensus 558 ~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l 637 (971)
T 2x1g_F 558 SMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEEL 637 (971)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988888999999999999999986 467889999999999988765322 222333333322
Q ss_pred hhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccC--CHHHHHH---HHHHHHHHHhhcC------------hh
Q 000050 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELREQ---AALGLGELIEVTS------------EQ 2263 (2622)
Q Consensus 2201 ~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~--~~~~r~~---aa~~L~~l~~~~~------------~~ 2263 (2622)
... +.+. +++.+.. +..+|+.++...+ .+
T Consensus 638 ~~~----------------------------------~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~ 683 (971)
T 2x1g_F 638 QAI----------------------------------CQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQ 683 (971)
T ss_dssp HHH----------------------------------HTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHH----------------------------------HhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCC
Confidence 211 1111 1222222 2333333333222 23
Q ss_pred hhhhhhhhhhHHHHHhhcCC-CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 000050 2264 SLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2264 ~l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2622)
.+.++...+.+.+..++... .+..+...++.+++.++...|..+.||+|++.+.++..++.... ..+...++.++.
T Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~ 760 (971)
T 2x1g_F 684 PVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIV 760 (971)
T ss_dssp CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHH
Confidence 56778888888877777543 25689999999999999999999999999999999998877422 235566666643
Q ss_pred -ccc------ChhhHHHHHHH----hhhc-------CCHhHHHHHHHHHHHHHhhcCCCCC-hHH-HHHHHHHHHHhhcC
Q 000050 2343 -LST------RVDPLVGDLLS----SLQV-------SDAGIREAILTALKGVLKHAGKSVS-SAV-KIRVYSVLKDLVYH 2402 (2622)
Q Consensus 2343 -~~~------~~~~ll~~Ll~----~l~~-------~d~~vr~~~l~AL~~vi~~~g~~~~-~~~-~~~i~~~L~~~l~~ 2402 (2622)
++. .+..++..+.. .+.. .+++++...+.-+..++.++...+. .+. ...++......+..
T Consensus 761 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~ 840 (971)
T 2x1g_F 761 MFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTL 840 (971)
T ss_dssp TCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTS
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC
Confidence 221 23344443333 2222 2578899999888888887665432 244 67777777777766
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 000050 2403 DDDHVRVSAASILGIMSQC 2421 (2622)
Q Consensus 2403 ~~~~vr~~aa~~Lg~L~~~ 2421 (2622)
++....+++..++..+...
T Consensus 841 ~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 841 PESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6555666677777666544
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-14 Score=192.48 Aligned_cols=508 Identities=15% Similarity=0.144 Sum_probs=346.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHH
Q 000050 1889 TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968 (2622)
Q Consensus 1889 ~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~ 1968 (2622)
.+.+.+.+++...|..+..-+-.+ ...|.++ +.+.+.+.+.+.+++..+|+.+..++..+... .+ +...-+++
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~----e~~~l~~n 89 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QP----DMAIMAVN 89 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SH----HHHHTTHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-Cc----hHHHHHHH
Confidence 345556777766665544433322 2345543 34455555677888888888887777765442 11 22344566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCC
Q 000050 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2622)
Q Consensus 1969 ~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~ 2048 (2622)
.+.+.+.|+++.+|..|..+++.+. .+
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i~---~~-------------------------------------------------- 116 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCIR---VD-------------------------------------------------- 116 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTCC---SG--------------------------------------------------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC---hH--------------------------------------------------
Confidence 7777788888888887766665431 11
Q ss_pred CchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHH--HHHHHHHhhcCCCCh
Q 000050 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVE--SLVSELLKGVGDNQA 2126 (2622)
Q Consensus 2049 ~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~--~ll~~Ll~~l~d~~~ 2126 (2622)
...+.++|.+.+.+.++++.+|..|..|+..+.... ++.+. .+++.+...+.|+++
T Consensus 117 ---------------------~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~ 174 (591)
T 2vgl_B 117 ---------------------KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNP 174 (591)
T ss_dssp ---------------------GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCH
T ss_pred ---------------------HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCCh
Confidence 112334566777788899999999999999998743 34444 688999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccc-ccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchh
Q 000050 2127 SIRRSSAYLIGYFYKNSKLY-LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRD 2205 (2622)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~~~-l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~ 2205 (2622)
.+|.+|+.+++.++...+.. +....+..+..|+..+.+.++-.+.....+++.+.. .+
T Consensus 175 ~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~---~~------------------ 233 (591)
T 2vgl_B 175 MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP---KD------------------ 233 (591)
T ss_dssp HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC---CS------------------
T ss_pred hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC---CC------------------
Confidence 99999999999998876533 344556777888887777666555544444433321 10
Q ss_pred hhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhc--ChhhhhhhhhhhhHHHHHhhcCC
Q 000050 2206 KERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT--SEQSLKEFVIPITGPLIRIIGDR 2283 (2622)
Q Consensus 2206 ~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~--~~~~l~p~v~~i~~~Li~~l~~~ 2283 (2622)
+.....+++.+...+.+.++.++..|+.++..+.... +++.++..+..+.++|+..+.
T Consensus 234 ------------------~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-- 293 (591)
T 2vgl_B 234 ------------------DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-- 293 (591)
T ss_dssp ------------------HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT--
T ss_pred ------------------hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc--
Confidence 0112235555555667778899999999999887543 334566666778888887664
Q ss_pred CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCH
Q 000050 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363 (2622)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~ 2363 (2622)
.+.++|..++.+|+.+....+..+.+++..+ + ++.+.+..+|..|...++.++. ..+++.++++|...+++.|.
T Consensus 294 ~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d~ 367 (591)
T 2vgl_B 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKLDIMIRLAS-QANIAQVLAELKEYATEVDV 367 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSCH
T ss_pred CCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCCH
Confidence 3789999999999999998887776655432 2 3334349999999999998754 34688899999999988899
Q ss_pred hHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCC-CC
Q 000050 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS-PS 2442 (2622)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~-~~ 2442 (2622)
++|..+++++..+..+. ++....+++.|.+.+.+..+.++..+...++.+....|+.. ...+..+...+.+ .+
T Consensus 368 ~~r~~~v~aI~~la~~~-----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~-~~~v~~L~~~l~~~~~ 441 (591)
T 2vgl_B 368 DFVRKAVRAIGRCAIKV-----EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY-ESIIATLCENLDSLDE 441 (591)
T ss_dssp HHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC-CTTHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHhC-----hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchH-HHHHHHHHHHHHhccC
Confidence 99999999999988763 34567788888899999999999888899999988777521 1222333333322 22
Q ss_pred chhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHH
Q 000050 2443 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522 (2622)
Q Consensus 2443 ~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~ 2522 (2622)
...+. +...++.+.+..+.. ..++++.+.+...+.++.+|..++.|+.++..... + ...+.+..++
T Consensus 442 ~~~~~----~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p----~---~~~~~i~~ll 507 (591)
T 2vgl_B 442 PDARA----AMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKP----S---ETQELVQQVL 507 (591)
T ss_dssp HHHHH----HHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCC----S---TTHHHHHHHH
T ss_pred HHHHH----HHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc----h---HHHHHHHHHH
Confidence 22232 333445554444422 35677778887888889999999999999987642 1 1234455555
Q ss_pred hh-cCC-CCHHHHHHHHHHHHHHHh
Q 000050 2523 SA-LHD-DSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2523 ~~-l~d-~s~dvr~~a~~~l~~~a~ 2545 (2622)
.. ..| .+.|||..|...++-+..
T Consensus 508 ~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 508 SLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHhhhcCCChHHHHHHHHHHHHHCc
Confidence 44 344 788999999988877654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-14 Score=196.27 Aligned_cols=470 Identities=13% Similarity=0.130 Sum_probs=301.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000050 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2622)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2622)
..+.+++.++ +...|+.+..++..+++..+ ....-+++.+.+.+.|+++.+|..|..++..+ ..+.-...++
T Consensus 52 ~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~~~~~~~l~ 123 (591)
T 2vgl_B 52 PDVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYLC 123 (591)
T ss_dssp HHHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---CSGGGHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---ChHHHHHHHH
Confidence 3344566665 68888887777777766432 22334556777778888888887776665544 2444556777
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh----hHH
Q 000050 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIA 1536 (2622)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~ 1536 (2622)
|.+.+.+.++++.+|+.|+.+++.+....|+.+.. +.+++.+.++++|+++.|+.+|+.+|+.++..-++. ...
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~ 201 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNP 201 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccH
Confidence 88888888888888888889888888776664432 467888899999999999999999999998754322 113
Q ss_pred hHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhc-CCCCccc
Q 000050 1537 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKDMI 1614 (2622)
Q Consensus 1537 ~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~l~ 1614 (2622)
..++.|++.+.+.++..+ ..++.+.. +. ..+.+....+++.+...+++.++.++..|+.++..+...+ .+++.+.
T Consensus 202 ~~~~~Ll~~l~~~~~~~q~~il~~l~~--l~-~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~ 278 (591)
T 2vgl_B 202 QNINKLLTALNECTEWGQIFILDCLSN--YN-PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN 278 (591)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHT--SC-CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 445666666655555444 34444432 22 1233445678888888899999999999999999887543 1223344
Q ss_pred chHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH
Q 000050 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2622)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l 1694 (2622)
...+.+.+.+..++ ++++++|..+..+++.++...++ .+...+..++ .+.+++ ..+|..+...+..++ ..+..
T Consensus 279 ~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~---~~~nv 351 (591)
T 2vgl_B 279 MLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLA---SQANI 351 (591)
T ss_dssp HHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTC---CSSTH
T ss_pred HHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHC---ChhhH
Confidence 44566777777655 47899999999999999886443 2222221111 222333 567777776655543 23345
Q ss_pred HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhh
Q 000050 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774 (2622)
Q Consensus 1695 ~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~ 1774 (2622)
+.+++.+...+.+.++++|..++..++.++..++ +....+++.+++.+.+..+.++..+..++..++..++.. ..
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~~ 426 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-YE 426 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-CC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-HH
Confidence 6778888888888899999999999988887654 344557777888888888888887777776666554321 01
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc
Q 000050 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2622)
Q Consensus 1775 ~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~ 1854 (2622)
..++.+.+.+. .
T Consensus 427 ~~v~~L~~~l~--------------------------------------------------------------------~ 438 (591)
T 2vgl_B 427 SIIATLCENLD--------------------------------------------------------------------S 438 (591)
T ss_dssp TTHHHHHHTTT--------------------------------------------------------------------T
T ss_pred HHHHHHHHHHH--------------------------------------------------------------------h
Confidence 11222222111 1
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCC
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD 1934 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d 1934 (2622)
+....+|..++-++|.+....+. .+.++..+.+.+.+.+..+|..+..++.++....++...+.+...+.....|
T Consensus 439 ~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d 513 (591)
T 2vgl_B 439 LDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQD 513 (591)
T ss_dssp CCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhc
Confidence 23344555555555555443322 2334444455555666777777777777776654433323333344444444
Q ss_pred -CChhhHHhHHHHHH
Q 000050 1935 -PSASRRQGVCIGLS 1948 (2622)
Q Consensus 1935 -~~~~vR~~a~~~L~ 1948 (2622)
.++++|..|+..+.
T Consensus 514 ~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 514 SDNPDLRDRGYIYWR 528 (591)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHH
Confidence 67888888876554
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-12 Score=186.79 Aligned_cols=784 Identities=11% Similarity=0.087 Sum_probs=425.6
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------
Q 000050 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2622)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------- 1118 (2622)
+.++.+.++-+.++++++.+.+|++..|.+|++.|++.... |....+...+. ..+.+..+|-+|.
T Consensus 6 ~l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~ 78 (1023)
T 4hat_C 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLIT 78 (1023)
T ss_dssp GGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 44556667778999999999999999999999999875421 22222222322 2344556666553
Q ss_pred HHHHhcCCCCCCCh-HhHHHHhc----CC-----CHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000050 1119 DIWDRYGYDFGTDY-SGLFKALS----HS-----NYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2622)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~----~~-----~~~vR~~aa~~la~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2622)
..|.....+-...+ ..+++.+. ++ ...+|++.+++++.++ ..||+.|+..+..+.+...
T Consensus 79 ~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~---------- 148 (1023)
T 4hat_C 79 RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS---------- 148 (1023)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----------
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----------
Confidence 46865432222223 45555443 22 4678999999999986 4689999988888876531
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCC
Q 000050 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2622)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~ 1267 (2622)
.+-..+......|..+++.+.+ + .-.+-...-|....++.. ...+.+++.+...+....
T Consensus 149 -~~~~~~~~~L~iL~~L~EEV~~--------~----~~~~l~~~r~~~lk~~l~--------~~~~~I~~ll~~iL~~~~ 207 (1023)
T 4hat_C 149 -SSVNVCENNMIVLKLLSEEVFD--------F----SAEQMTQAKALHLKNSMS--------KEFEQIFKLCFQVLEQGA 207 (1023)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHT--------S----CTTTSCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCS
T ss_pred -CCHHHHHHHHHHHHHHHHHHHH--------h----hhccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCCC
Confidence 1112345555555555543211 0 000111122222222221 124556666666665421
Q ss_pred CChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHH-HHcCCCCHHHHHHHHhhhHhhHhhh--cc--chHH----H
Q 000050 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQSM--QD--EAPT----L 1338 (2622)
Q Consensus 1268 ~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~-~~l~~~~~~Vq~~a~~~L~~lv~~~--~~--~~~~----~ 1338 (2622)
...+...+...++.....++-..-.-..+++.++ ..+. +++.+.++++|+..++..- ++ ...+ +
T Consensus 208 -----~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 208 -----SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp -----SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 1223334444444444333211000012556666 5553 5689999999999988632 22 1222 2
Q ss_pred HHHHHHHH---------------hcCC--ChHHHHHHHHHHHHHHhhhCccch--hh-hcHHH----HHHHHHhCCCCHH
Q 000050 1339 VSRLLDQL---------------MKSD--KYGERRGAAFGLAGVVKGFGISSL--KK-YGIAA----TLREGLADRNSAK 1394 (2622)
Q Consensus 1339 i~~Ll~~L---------------~~~~--~~~~r~~Aa~~L~~l~~~lg~~~l--~~-~~i~~----~L~~~l~~~~~~~ 1394 (2622)
++..++.+ ..++ |.....+-+..+..+......-.. .. .+++. .+..+.... +..
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d~e 359 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERE 359 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-CHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-cHH
Confidence 22333222 1111 122222333333333332211000 00 12332 444444443 454
Q ss_pred HHHHHHHHHHHHHHHh------cccchhHHHHHHHHHHHHcCCCC---------------------HHHH-HHHHHHHHH
Q 000050 1395 RREGALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQV---------------------VAVR-EAAECAARA 1446 (2622)
Q Consensus 1395 ~R~~al~al~~La~~~------~~~~~~~v~~ilp~ll~~l~D~~---------------------~~VR-~aa~~al~~ 1446 (2622)
.=..++.....+++.+ ...+.|++.++++.++..+.-|. .... +..-+++..
T Consensus 360 i~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~ 439 (1023)
T 4hat_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHH
Confidence 4334444444455532 23578889999999998775332 0000 111255555
Q ss_pred HHHhhcHHhHHhhHHHHHhhccC--CChhhHHHHHHHHHHHHhhCch-hhhhhhhhhHHHHhhhhc-----CCCHHHHHH
Q 000050 1447 MMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSA 1518 (2622)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L~-----D~~~~VR~a 1518 (2622)
+....+++.+..+++.+-+.+.+ .+|+.+.+++.++|+++.+... .....++.++|.|+.++. |.+..||..
T Consensus 440 l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t 519 (1023)
T 4hat_C 440 LTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASD 519 (1023)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHH
Confidence 55445555566677777666654 6899999999999999987554 477889999999999886 467788999
Q ss_pred HHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHH
Q 000050 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2622)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~ 1598 (2622)
+++++|++++.+... ...+..++..+.+++.+.++++...|+.
T Consensus 520 ~~~~lGry~~wl~~~-------------------------------------~~~L~~vl~~L~~~l~~~~~~v~~~A~~ 562 (1023)
T 4hat_C 520 IMYVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACD 562 (1023)
T ss_dssp HHHHHHTCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-------------------------------------HHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999998876310 1122334555566666666778888888
Q ss_pred HHHHhhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHHhhhcCC
Q 000050 1599 IVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNS 1671 (2622)
Q Consensus 1599 ~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~-~~~ll~~Ll~~L~~~~~ 1671 (2622)
++..+|+.... +.+..||++.++..+.....+-.+.-+..+..++|.++...+.+. .+.++..|+..+..
T Consensus 563 al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~--- 639 (1023)
T 4hat_C 563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM--- 639 (1023)
T ss_dssp HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH---
T ss_pred HHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH---
Confidence 88888875331 234468999999999998888788889999999999999887542 33333333322211
Q ss_pred hHHHHHHHHHHHHHHHH--hchhHHH--hHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcC
Q 000050 1672 NVERSGAAQGLSEVLAA--LGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1672 ~~~r~~a~~~L~~i~~~--~g~~~l~--~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2622)
.+..+... -+...+. +-...+ -..+.++..++..+|..|.||+..+.+.+++..+
T Consensus 640 ---------~~~~l~~~~~~~~~~~~d~~~~~~l------------~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~ 698 (1023)
T 4hat_C 640 ---------AWDTIVEQSTANPTLLLDSETVKII------------ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1023)
T ss_dssp ---------HHHHHHHHHHHCTTGGGCHHHHHHH------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCchhhcCHHHHHHH------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 11111110 0111110 000111 1235577788899999999999999998876543
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHH
Q 000050 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2622)
Q Consensus 1748 d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~ 1827 (2622)
-.... +...+..-|....+. | ..+++ -.+|.+.++++...+.+.. + .+
T Consensus 699 ~~s~~--------i~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~~-------------~----~~ 746 (1023)
T 4hat_C 699 AVSSM--------ISAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKAR-------------N----LD 746 (1023)
T ss_dssp HHHHH--------HHHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHCS-------------C----HH
T ss_pred HHHHH--------HHHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcCC-------------C----HH
Confidence 21111 111111111110000 0 00000 1145566666666654321 0 01
Q ss_pred HHHHHHHHHhChhhHHHHHHHHH---Hhc--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC---CCH
Q 000050 1828 AHGRAIIEVLGRDKRNEVLAALY---MVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS---SSS 1899 (2622)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~il~~L~---~~~--~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s---~~~ 1899 (2622)
.....++ +.++..+. ... .-..++|-.....++..+.......+..++..++..-+++++. ..+
T Consensus 747 ~~~~~~~--------~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~P 818 (1023)
T 4hat_C 747 DVVKVLV--------EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYP 818 (1023)
T ss_dssp HHHHHTH--------HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred HHHHHhH--------HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccCh
Confidence 1111111 11111111 111 0112344333333343333333333444444444445556653 678
Q ss_pred HHHHHHHHHHHHHHHHhccc-------hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChh--------hHHHhHH
Q 000050 1900 ERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS--------QLLSFMD 1964 (2622)
Q Consensus 1900 ~~R~~A~~~L~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~--------~l~~~l~ 1964 (2622)
+.|..-.+.+..+...+... ....++..+.-+++.+..++-..++..+.+++.+.... -...|+.
T Consensus 819 e~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~ 898 (1023)
T 4hat_C 819 EHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFF 898 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999988876543 23445555666788888888888887777777654321 1123444
Q ss_pred hHHHHHHHHhcCC
Q 000050 1965 ELIPTIRTALCDS 1977 (2622)
Q Consensus 1965 ~ll~~l~~~L~d~ 1977 (2622)
.++..+...+.|.
T Consensus 899 ~~~~~~~~v~td~ 911 (1023)
T 4hat_C 899 IFVSETFFVLTDS 911 (1023)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCc
Confidence 4444445555554
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-12 Score=183.64 Aligned_cols=757 Identities=11% Similarity=0.098 Sum_probs=414.4
Q ss_pred hHHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCC--chHHHHHHHHHHHhcCCCCCCC
Q 000050 1056 PNEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDP--EKSVAEAAEDIWDRYGYDFGTD 1131 (2622)
Q Consensus 1056 ~~~~~~ll~~~~s~--~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~w~~~~~~~~~~ 1131 (2622)
.+++.+.++.+++| |+..|.+|.+.|++.... |....+...+. ..+. +..++-.|....+..=..++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEIF--SEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT--TCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHHH--hCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 35666777666777 688999999998876421 11122222222 1222 5666666654433210023322
Q ss_pred --------h-HhHHHHhc-----CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000050 1132 --------Y-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2622)
Q Consensus 1132 --------~-~~Ll~~l~-----~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2622)
+ ..++..+. .....+|.+.+.+++.++. .||+.|+..+..+.+..... +.-..-..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~~~~~~~~ 148 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------SQSEFSNF 148 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------CCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------ChhHHHHH
Confidence 2 44555443 2457899999999999864 68888888888887765321 01011122
Q ss_pred HHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHhcCCCCChhhhhh
Q 000050 1197 IALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2622)
Q Consensus 1197 ~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~-~~~~~llp~~~~~l~~~~~~~~~~~~ 1275 (2622)
....+..+.+.+.+.... . +....-|..- ....+....- ...+..+.++..+... ..+.
T Consensus 149 ~LriL~~i~EEv~~~~~~----------~-~~~~~~r~~~---lkd~m~~~~~~~i~~~~~~iL~~~~~~------~~~~ 208 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVL----------K-TDVQIQKDNL---VKDAIRANDMSDIVSFVYEMMLAYSNA------KNYG 208 (980)
T ss_dssp HHHHHHHHHHHHCCCCSC----------C-CHHHHHHHHH---HHHHHHHHTHHHHHHHHHHHHHHHHHT------TCHH
T ss_pred HHHHHHHhHHHHHhcccc----------c-CHHHHhhhHH---HHHHHHhccHHHHHHHHHHHHHHHhcc------CCHH
Confidence 233333333333221100 0 0000112111 0111111100 0122223333333321 1223
Q ss_pred hhhHHHHHHHHHhhhhccCCcch---HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccch--HHHHHHH--HHHH--
Q 000050 1276 VREGVVIFTGALAKHLAKDDPKV---HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRL--LDQL-- 1346 (2622)
Q Consensus 1276 vr~~~~~~~~~la~~l~~~~~~v---~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~--~~~i~~L--l~~L-- 1346 (2622)
++..+ +..+..++.-.+... ..+++.+...+.+ +++|.++++||..++....+.. ..++..+ .+.+
T Consensus 209 l~~~~---L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~ 283 (980)
T 3ibv_A 209 TVGLC---LQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK 283 (980)
T ss_dssp HHHHH---HHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHH---HHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence 34344 444444443222211 4677888888876 7999999999998886643311 1222221 1111
Q ss_pred -hc-CCChHHHHHHHHHHHHHHhh---h--Ccc--------c--hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000050 1347 -MK-SDKYGERRGAAFGLAGVVKG---F--GIS--------S--LKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2622)
Q Consensus 1347 -~~-~~~~~~r~~Aa~~L~~l~~~---l--g~~--------~--l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~ 1409 (2622)
.. .+|.+.+++-+..+..+... + .+. . -.-..+++.+..+..++ +..+-..++..+..+.+.
T Consensus 284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~-~deVs~~t~~Fw~~~l~~ 362 (980)
T 3ibv_A 284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD-YDETSTAVFPFLSDLLVS 362 (980)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS-SHHHHHTTHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHH
Confidence 11 34444444333333222211 0 110 0 00125677777777776 455544444444444332
Q ss_pred h---------cccchhHHHHHHHHHHHHcCCC-----------C-----HHHHHHHHHHHHHHHHhhcHHhH-H----hh
Q 000050 1410 L---------GRLFEPYVIQMLPLLLVAFSDQ-----------V-----VAVREAAECAARAMMSQLSAQGV-K----LV 1459 (2622)
Q Consensus 1410 ~---------~~~~~~~v~~ilp~ll~~l~D~-----------~-----~~VR~aa~~al~~i~~~l~~~~v-~----~i 1459 (2622)
. ...+.+++.++++.++..+.-+ + ...|+... .+..++..+.+..+ . .+
T Consensus 363 ~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i 441 (980)
T 3ibv_A 363 LRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAI 441 (980)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHH
Confidence 1 2345678888888888876421 1 13566555 55555555555543 3 33
Q ss_pred HHHHHhhcc---CCChhhHHHHHHHHHHHHhhCchhh------hhhhhhhHHHHhhhhc-----CCCHHHHHHHHHHHHH
Q 000050 1460 LPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQ 1525 (2622)
Q Consensus 1460 lp~Ll~~L~---~~~w~~r~~a~~~L~~la~~~p~~l------~~~L~~ivp~L~~~L~-----D~~~~VR~aA~~aL~~ 1525 (2622)
.+.+-+.+. +.+|+.+.+++.+|+.++++++... ..++|.+++.+..+++ ++|+.||..+++++++
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 343434453 4579999999999999999876522 2567888888888866 8999999999999999
Q ss_pred HhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh--hhcCCCHHHHHHHHHHHHHh
Q 000050 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSAETKKKAAQIVGNM 1603 (2622)
Q Consensus 1526 l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~--~l~d~~~~vr~~a~~~l~~l 1603 (2622)
.++.+... | ..+..+++.+.. ++.+.+.++|..|+.++.++
T Consensus 522 ys~~~~~~---------------~----------------------~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 522 YASFFDYE---------------S----------------------AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp TGGGGGTC---------------C----------------------TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred HHHHHhcC---------------c----------------------hhHHHHHHHHhccccccCCChhHHHHHHHHHHHH
Confidence 99887521 0 112233444444 66666778899999999999
Q ss_pred hhhcCCCCcccchHhhhHHHHHHHhcC---C------------------CHHHHHHHHHHHHHHHhhhCC--C----Cch
Q 000050 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGE--E----NFP 1656 (2622)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d---~------------------~~~vR~~a~~aL~~L~~~~g~--~----~~~ 1656 (2622)
|+... ..+.||++.++..+..++.- + ..+-+-...+++|.++...+. + ++.
T Consensus 565 ~~~~~--~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~ 642 (980)
T 3ibv_A 565 VKSIK--KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD 642 (980)
T ss_dssp HHHTT--TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHhh--HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 98753 46889999999988887762 1 012466789999999987663 1 455
Q ss_pred hhHHHHHHHhh----hcCCh-HHH---HHHHHHHHHHHHHhch---------hHHHhHhHHHHHhcc--CCChhhHHHHH
Q 000050 1657 DLVSWLLDALK----SDNSN-VER---SGAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--HQRASVRDGYL 1717 (2622)
Q Consensus 1657 ~ll~~Ll~~L~----~~~~~-~~r---~~a~~~L~~i~~~~g~---------~~l~~llp~l~~~l~--~~~~~vR~~al 1717 (2622)
.+++.+++.+. ..... ..+ .....+++.+.+++.. ..+.+.++.++..+. ..+..+|+.+.
T Consensus 643 ~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~ 722 (980)
T 3ibv_A 643 SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVR 722 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 66655554443 22111 111 1345567888776631 234566666666665 46789999999
Q ss_pred HHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhch---hhhhHHHHhh----ccCCC---
Q 000050 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS---LPLLLPAVED----GIFND--- 1787 (2622)
Q Consensus 1718 ~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~---i~~llp~l~~----~l~d~--- 1787 (2622)
.+|..+..++|.++.|+++.++..++...+-.. . ...+..+..++..|+.+. ++.+++.+.. .+...
T Consensus 723 ~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e--~-~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~ 799 (980)
T 3ibv_A 723 FTSGRIINVVGPDMLPKVPQLISILLNSIDMNE--L-VDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQG 799 (980)
T ss_dssp HHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT--H-HHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999996544221 1 235677778888887662 2233333322 11110
Q ss_pred --c----hHHHHHHHHHHHHHHHH-hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccC-CCHH
Q 000050 1788 --N----WRIRQSSVELLGDLLFK-VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD-VSLS 1859 (2622)
Q Consensus 1788 --~----~rvR~~a~~ll~~ll~~-~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D-~~~~ 1859 (2622)
. ..++.+-+..+..++.. +++ . +...-+...++.++..++.+-.+ .+..
T Consensus 800 td~~r~~~~l~r~~~~fl~~i~~~~~~~----v-------------------~~s~~n~~~l~~~l~~l~~~a~~~~d~~ 856 (980)
T 3ibv_A 800 TDDAVKQNDLRKSYISFILQLLNKGFGS----I-------------------LFTEENQVYFDPLINSILHFANLVGEPA 856 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCTG----G-------------------GGSHHHHTTHHHHHHHHHHHC-----CH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCchh----h-------------------hcCCcchHHHHHHHHHHHHHhccCCChH
Confidence 0 01233333333333321 000 0 00000112445667767655433 4567
Q ss_pred HHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHHHHhcCCCHHHHH--------HHHHHHHHHHHHhccch
Q 000050 1860 VRQAALHVWKTIVANTP-----KTLKEIMPVLMNTLISSLASSSSERRQ--------VAGRALGELVRKLGERV 1920 (2622)
Q Consensus 1860 VR~aA~~~l~~l~~~~p-----~~l~~~l~~ll~~L~~~L~s~~~~~R~--------~A~~~L~~lv~~~~~~~ 1920 (2622)
+++.|+.++..++...+ ..|.+++=.++|.......+++.+.+- ..+.++..+..+.|+.+
T Consensus 857 ~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~ 930 (980)
T 3ibv_A 857 TQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIY 930 (980)
T ss_dssp HHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 89999999999988542 125554433777777776665544332 23334444445555543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.4e-14 Score=195.90 Aligned_cols=540 Identities=12% Similarity=0.072 Sum_probs=327.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhH
Q 000050 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2622)
Q Consensus 1887 l~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~l 1966 (2622)
++.++..|.+++...|..+.+.+...-+ ..+....+|.|...+.++++.+|..++.+|+.+.............+.+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~---~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhH---HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5567777888888888888877764422 1233566777777778889999999999999986532211111112467
Q ss_pred HHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCh-h--hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhh
Q 000050 1967 IPTIRTALCD-SILEVRESAGLAFSTLFKSAGM-Q--AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042 (2622)
Q Consensus 1967 l~~l~~~L~d-~d~~VR~~A~~al~~l~~~~g~-~--~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip 2042 (2622)
++.+...|.+ .++++|..|+.+|..+...... . .-...+|.|++.|++++..
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~------------------------ 249 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDS------------------------ 249 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHH------------------------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHH------------------------
Confidence 8888888864 4899999999999887532111 0 1124566777766654321
Q ss_pred hhhcCCCchHHHHHHHHHHHHhCCChhhh-HhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChh--c--HHHHHHHH
Q 000050 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFH-LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE--G--VESLVSEL 2117 (2622)
Q Consensus 2043 ~L~~~~~~~~~~~aL~sLa~~~g~~l~~~-l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~--~--l~~ll~~L 2117 (2622)
+...++.+|..|+......-... -..++|.|+..+.+.+..++..+..++..+.....+. . -...++.|
T Consensus 250 ------v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~L 323 (780)
T 2z6g_A 250 ------VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 323 (780)
T ss_dssp ------HHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred ------HHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence 01123344444443222111111 1467899999998888889988888887665321110 0 01235566
Q ss_pred HhhcCCCChh-HHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHH
Q 000050 2118 LKGVGDNQAS-IRRSSAYLIGYFYKNSKLYLVDE-APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2622)
Q Consensus 2118 l~~l~d~~~~-vR~~A~~~L~~l~~~~~~~l~~~-~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~ 2195 (2622)
+..+++.+.. .+..++.++..++.... ..... -...++.|+.++.+.+..++..+..+|..++....+.
T Consensus 324 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-------- 394 (780)
T 2z6g_A 324 VNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-------- 394 (780)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTSTT-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--------
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcChH-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--------
Confidence 6666665544 45577888888875321 11111 1245788899999989999999999988887543210
Q ss_pred HHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh-hhhhH
Q 000050 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV-IPITG 2274 (2622)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v-~~i~~ 2274 (2622)
.....++|.+++.+.+.++++|..|+.+|+.++.... +.....+ ...++
T Consensus 395 -----------------------------~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~-~~~~~i~~~g~i~ 444 (780)
T 2z6g_A 395 -----------------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIE 444 (780)
T ss_dssp -----------------------------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTHHH
T ss_pred -----------------------------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHH
Confidence 1234578888888888999999999999999986532 2222221 34567
Q ss_pred HHHHhhcCCC-CHhhHHHHHHHHHHHHHhcCCC--ccCc--hHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhcccCh-
Q 000050 2275 PLIRIIGDRF-PWQVKSAILSTLSIIIRKGGIA--LKPF--LPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRV- 2347 (2622)
Q Consensus 2275 ~Li~~l~~~~-~~~vk~~al~~L~~L~~~~~~~--l~p~--l~~L~~~llk~L~d~~-~~vR~~Aa~aLg~L~~~~~~~- 2347 (2622)
+|++.+.+.. ..+++..++.+|+.|....+.. .+.. .....+.+++.|.+++ +.+|..|+.+|+.++......
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 524 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 524 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH
Confidence 8888886532 3489999999999885422210 0000 0123566778888875 599999999999996522111
Q ss_pred ----hhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhc
Q 000050 2348 ----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCM 2422 (2622)
Q Consensus 2348 ----~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~Lg~L~~~~ 2422 (2622)
...++.|+..+.+.+..+|..+.+++.. + .... ...+.++..++.+|+.++..
T Consensus 525 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n--q-------------------~~~~~~~~~~v~~~a~~aL~~La~~- 582 (780)
T 2z6g_A 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ--Q-------------------QFVEGVRMEEIVEACTGALHILARD- 582 (780)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHTTC---------------------------CCSTTCCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHCCCHHHHHHHHHhcchhHHHHHhhcccc--c-------------------hhhcccChHHHHHHHHHHHHHHhcC-
Confidence 1345666666655444444443333222 0 0011 12356777888888887631
Q ss_pred CchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000050 2423 EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2423 ~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
. .. +. .+... .+++.|++.+.+.++.++.+|..+++.+...
T Consensus 583 -~-~~------------------~~--------~l~~~-----------~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 583 -I-HN------------------RI--------VIRGL-----------NTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp -H-HH------------------HH--------HHHHT-----------CCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred -h-hh------------------HH--------HHHHC-----------CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 1 10 00 00000 1244566677788899999999999988643
Q ss_pred hhhcCCCCchhhHh--HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhh-HHHHHHh
Q 000050 2503 QIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL-FGPALAE 2564 (2622)
Q Consensus 2503 ~~~~~~~~~~~l~~--~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~-l~p~l~~ 2564 (2622)
.. ....+.+ .++.+...+++++.+||+.|+.+|..+++..|..++..+.. +++.+|.
T Consensus 624 ~~-----~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~ 683 (780)
T 2z6g_A 624 KE-----AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683 (780)
T ss_dssp HH-----HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC--
T ss_pred HH-----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHh
Confidence 21 1112222 57788888899999999999999999999998777665522 4454443
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-11 Score=180.27 Aligned_cols=702 Identities=11% Similarity=0.087 Sum_probs=406.4
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh----CCCCchhhHHHHH
Q 000050 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM----GEENFPDLVSWLL 1663 (2622)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~----g~~~~~~ll~~Ll 1663 (2622)
.+...|+.|.+.+..+-.. + + ++..+...+.. +.++.+|..|+..|...+... +++....+-..++
T Consensus 28 p~~~~r~~Ae~~L~~~~~~---p-~---~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 28 GSGVQQKQAQEILTKFQDN---P-D---AWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHS---T-T---GGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC---c-h---HHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 3456888999999877542 1 2 22223333222 567899999999999988642 2222333444455
Q ss_pred HHhhhcC--------ChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhC-------
Q 000050 1664 DALKSDN--------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG------- 1728 (2622)
Q Consensus 1664 ~~L~~~~--------~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g------- 1728 (2622)
..+.+.. ...+|...++.++.++.....+.|+++++.+++.++ .++..++.++.++..++....
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~ 176 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQM 176 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 5544321 245788888999999888767778899999998886 566678888888888885443
Q ss_pred ---------cchhhhHHhHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhhch--hhhhHHHHhhccCCCchHHHHHHH
Q 000050 1729 ---------VQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS--LPLLLPAVEDGIFNDNWRIRQSSV 1796 (2622)
Q Consensus 1729 ---------~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~lv~~~~~~~--i~~llp~l~~~l~d~~~rvR~~a~ 1796 (2622)
..|..+++.+++.+...+.+ .+..++..+++++..++...+... .+.+++.+.+.+. .+..+|..++
T Consensus 177 ~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~ 255 (1049)
T 3m1i_C 177 TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITL 255 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHH
Confidence 23556677777777777754 346788888888877654332111 0123333331111 1455667777
Q ss_pred HHHHHHHHHhcCCc-----cc---------------c---------cccCCCCCCcccHHHHHHHHH-------HHhC--
Q 000050 1797 ELLGDLLFKVAGTS-----GK---------------A---------LLEGGSDDEGASTEAHGRAII-------EVLG-- 1838 (2622)
Q Consensus 1797 ~ll~~ll~~~~~~~-----~~---------------~---------~~~~~~dde~~~~~~~~~~l~-------~~Lg-- 1838 (2622)
+++..++..-.+.. .+ . .....++++.+-.....+.+. +.+.
T Consensus 256 ~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~ 335 (1049)
T 3m1i_C 256 KCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESD 335 (1049)
T ss_dssp HHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77666654310000 00 0 000011111111111111111 1110
Q ss_pred ---hhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh------ChhhHHHHHHHHHHHHHHHhcCC------------
Q 000050 1839 ---RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN------TPKTLKEIMPVLMNTLISSLASS------------ 1897 (2622)
Q Consensus 1839 ---~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~------~p~~l~~~l~~ll~~L~~~L~s~------------ 1897 (2622)
.+....++..+..+....+..|+..+++.|..++.. ....+.++++.+++.++..+.-+
T Consensus 336 ~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e 415 (1049)
T 3m1i_C 336 ESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGE 415 (1049)
T ss_dssp GGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSC
T ss_pred hhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCc
Confidence 112233455555544555889999999999999872 23456788999999988877421
Q ss_pred -------C---HHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC--CCChhhHHhHHHHHHHHHHhhChhhHHHhHHh
Q 000050 1898 -------S---SERRQVAGRALGELVRKLGERVLPSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2622)
Q Consensus 1898 -------~---~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~--d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ 1965 (2622)
+ +..|..+..+|..++...+..+++.+.+.+.+.+. ..+|..|.+++.++|.+...+....-.++++.
T Consensus 416 ~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~ 495 (1049)
T 3m1i_C 416 IVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT 495 (1049)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred chHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHH
Confidence 0 13366777888888877666678888888887775 36789999999999987665544333345777
Q ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhC--hhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhcccccc
Q 000050 1966 LIPTIRTALC-----DSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038 (2622)
Q Consensus 1966 ll~~l~~~L~-----d~d~~VR~~A~~al~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp 2038 (2622)
+++.+..... |+.+.+|..++.+++++.+.+. +..+..+++.+++.+.++..
T Consensus 496 v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~--------------------- 554 (1049)
T 3m1i_C 496 VIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHE--------------------- 554 (1049)
T ss_dssp HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCH---------------------
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH---------------------
Confidence 7777766432 3566777778888887765433 23455566666665544321
Q ss_pred chhhhhhcCCCchHHHHHHHHHHHHhCCChh--------hhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh-h-
Q 000050 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLN--------FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-E- 2108 (2622)
Q Consensus 2039 ~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~--------~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~-~- 2108 (2622)
++...++.++..+++.++..+. ||++.++..+...+..-+.+......++++.++...+. +
T Consensus 555 ---------~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~ 625 (1049)
T 3m1i_C 555 ---------GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAE 625 (1049)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 1222355566666665555443 99999999988888766666677788899998877652 2
Q ss_pred ---cHHHHHHHHHhhcC--------C----CChh-HHH--HHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHH
Q 000050 2109 ---GVESLVSELLKGVG--------D----NQAS-IRR--SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2622)
Q Consensus 2109 ---~l~~ll~~Ll~~l~--------d----~~~~-vR~--~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~ 2170 (2622)
.+..+++.+...+. + .++. .+. ..+.++..++...+..+.++.+.++..++..+.... ...
T Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~-~~~ 704 (1049)
T 3m1i_C 626 RNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS-SMI 704 (1049)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 24444444332221 0 0222 222 334566677777777888888777766654442110 001
Q ss_pred HHHHHHHHHHHhhcC-ccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHH-HH
Q 000050 2171 AAAWEALSRVVASVP-KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR-EQ 2248 (2622)
Q Consensus 2171 ~~a~~aL~~l~~~~~-~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r-~~ 2248 (2622)
+.+..+-+......+ ...+..+.+.+.+.+...... .. .+... ....+.+++..++..+.+.....| ..
T Consensus 705 ~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~------~~--~l~~~-~~~~~~~~l~~ll~~~~~~~~~~~~~~ 775 (1049)
T 3m1i_C 705 SAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISK------AR--NLDDV-VKVLVEPLLNAVLEDYMNNVPDARDAE 775 (1049)
T ss_dssp HHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHH------CS--CHHHH-HHHTHHHHHHHHHHHHHHSCGGGCCTH
T ss_pred HHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHh------CC--CHHHH-HHHHHHHHHHHHHHHHHhCCcccccHH
Confidence 111100000000000 011222222222222222111 00 00000 001122233333333322212111 34
Q ss_pred HHHHHHHHHhhcChhhhhhhhhhhhHHHHHh----hcC--CCCHhhHHHHHHHHHHHHHhcCCCccCc----hHHHHHHH
Q 000050 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRI----IGD--RFPWQVKSAILSTLSIIIRKGGIALKPF----LPQLQTTF 2318 (2622)
Q Consensus 2249 aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~----l~~--~~~~~vk~~al~~L~~L~~~~~~~l~p~----l~~L~~~l 2318 (2622)
++.+++.++...| +.+.|++..+...+... +.+ ...++++...+..++.++.+++..+.+. +..+....
T Consensus 776 ~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~ 854 (1049)
T 3m1i_C 776 VLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854 (1049)
T ss_dssp HHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHH
Confidence 7788999998887 67888888887666654 322 3468899999999999999887655331 34455566
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHh
Q 000050 2319 IKCLQDSTRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2319 lk~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2622)
+.++..+++.+...+...+-.+..
T Consensus 855 ~~al~~~~~~~~~~~l~~l~~l~~ 878 (1049)
T 3m1i_C 855 CWAFKHNNRDVEVNGLQIALDLVK 878 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHH
Confidence 678888888988888888887744
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=183.47 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=266.8
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHH
Q 000050 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2622)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2622)
+|.+++.++++++.+|..|+.+|..+.....++.+..++ . -..++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 677888888999999999999999886532222211100 0 0035667
Q ss_pred HHhhhcCC-CHHHHHHHHHHHHHhhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--C--
Q 000050 1581 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--N-- 1654 (2622)
Q Consensus 1581 L~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~--~-- 1654 (2622)
+.+.+.+. ++.+|..++.++.+++.. .++....+ -..++|.+.+++.++++.+|..|+.+|+.++....+. .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777776 788999999999998762 21111111 2458999999999999999999999999998743211 1
Q ss_pred chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhc----hhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcc
Q 000050 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2622)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g----~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 1730 (2622)
-...+|.++..+.++.+..+|..++.+++.++...+ .......+|.+++.+.+.++.+|..++.++..++......
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 135788888888865567788899999999886431 2234678899999999999999999999999887643221
Q ss_pred hhhhH-HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000050 1731 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2622)
Q Consensus 1731 f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~ 1809 (2622)
..... ..++|.++..+.+.++.+|..++.++..+....+.
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------------------------------------- 267 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI--------------------------------------- 267 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH---------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH---------------------------------------
Confidence 11111 22555555555555555555555544443211000
Q ss_pred cccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHH-HHHHH
Q 000050 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1888 (2622)
Q Consensus 1810 ~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l-~~ll~ 1888 (2622)
..+.+.+ ..+++.+...+.+.+..+|..|+.+++.++.+.+.....++ ..+++
T Consensus 268 -------------------~~~~~~~-------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 268 -------------------QTQVILN-------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp -------------------HHHHHHT-------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -------------------HHHHHHH-------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000110 01344444456677889999999999999876665555444 36778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-----hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh-----
Q 000050 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1958 (2622)
Q Consensus 1889 ~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-----~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~----- 1958 (2622)
.++..+.+.++.+|..|+.+|+.++....+. .-..++|.|...+.++++++|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 8888888889999999999999998763322 124688899999999999999999999999876433211
Q ss_pred -HHHhHHhH-----HHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000050 1959 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1993 (2622)
Q Consensus 1959 -l~~~l~~l-----l~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2622)
..+|...+ ++.+...+.+++.++++.|..++..+.
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12333333 566777777788889998888777664
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-13 Score=180.61 Aligned_cols=344 Identities=13% Similarity=0.076 Sum_probs=253.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcccchhHHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHHh
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEK-LGRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQG 1455 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~-~~~~~~~~v~--~ilp~ll~~l~D~-~~~VR~aa~~al~~i~~~l~~~~ 1455 (2622)
++.+.+.+++. ++..|..|+.++..+... ........+. .++|.++..+.++ ++.+|..+..++..++..-+...
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 55566677766 789999999999887652 2222334444 5899999999988 89999999999998876432221
Q ss_pred ---H-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcC-CCHHHHHHHHHHHHHHhhh
Q 000050 1456 ---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1456 ---v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~ 1529 (2622)
+ ...+|.+++.+.++++.+|..++.+|+.++...+......+ ..++|.+..++.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 1 46899999999999999999999999999987654322222 4688999999985 7899999999999999965
Q ss_pred c-CC---hhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccc--cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 000050 1530 I-KN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2622)
Q Consensus 1530 ~-~~---~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~--~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~ 1602 (2622)
. +. ..+..++|.|.+.+.+++..++ .++..+....... ....-....++|.+...+.+.++++|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 21 2347889999999988887776 4555554311100 00001113478889999999999999999999999
Q ss_pred hhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---Cc-hhhHHHHHHHhhhcCChHHHHH
Q 000050 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 1677 (2622)
Q Consensus 1603 l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~~-~~ll~~Ll~~L~~~~~~~~r~~ 1677 (2622)
++.. .+....... ..+++.+..++.++++.+|..|+.+|+.++....+. .. ..++|.++..+.+.. ..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHH
Confidence 9863 211111112 258899999999999999999999999998632211 11 367888888887654 568889
Q ss_pred HHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhh
Q 000050 1678 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2622)
Q Consensus 1678 a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~ 1727 (2622)
++.+++.++.....+.. ..++|.+++.+.+.++.+|..++.++..++...
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999876433322 357899999999999999999999999988754
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-11 Score=167.03 Aligned_cols=761 Identities=9% Similarity=0.069 Sum_probs=400.8
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------
Q 000050 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2622)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------- 1118 (2622)
+.++.+.++-+.+++++..+.+|++..|.+|++.|.+.... |........+ -..+.+..+|-+|.
T Consensus 18 ~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~i--L~~s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 18 LLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTI--LEFSQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp CCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred hhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHH
Confidence 44555566678899999999999999999999999876421 2222222222 23344566666553
Q ss_pred HHHHhcCCCCCCCh-HhHHHHhc----C-----CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000050 1119 DIWDRYGYDFGTDY-SGLFKALS----H-----SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2622)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~----~-----~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2622)
..|.....+-...+ ..+++.+. + +++.++.+.+++++.++. .||+.|+..+..+.+....
T Consensus 91 ~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--------- 161 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--------- 161 (1073)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---------
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---------
Confidence 45765332222223 55555443 1 367899999999999975 5888888888888775421
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCC
Q 000050 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2622)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~ 1267 (2622)
+-..+......|..+++.+.+-. ..-+ ...-|....++. . ...+.+++.+..++...
T Consensus 162 --~~~~~~~~L~IL~~L~EEV~d~~---------~~~l---~~~r~~~lk~~L----~----~~~~~Il~ll~~iL~~~- 218 (1073)
T 3gjx_A 162 --SESLCQNNMVILKLLSEEVFDFS---------SGQI---TQVKAKHLKDSM----C----NEFSQIFQLCQFVMENS- 218 (1073)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTSH---------HHHB---CHHHHHHHHHHH----H----HTCHHHHHHHHHHHHHC-
T ss_pred --CHHHHHHHHHHHHHHHHHHHhcc---------cccc---cHHHHHHHHHHH----H----HHHHHHHHHHHHHhccc-
Confidence 11345556666666665432110 0001 011122222221 1 13667777777777642
Q ss_pred CChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHH-HHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHH
Q 000050 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL 1346 (2622)
Q Consensus 1268 ~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L-~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L 1346 (2622)
. ...+...+...++....+++-+.-.-..+++.+ ...+ +++++|.++++||..++..-.+...+.+..+++.+
T Consensus 219 ~----~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 219 Q----NAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp C----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 123334444555555554422100002245555 4555 35789999999999888653222223333333221
Q ss_pred h--------cCCChHH--------HHHHHHHHHHHHhhhCccch---------hh--hcHHHHHHHHHhCCCCHHHHHHH
Q 000050 1347 M--------KSDKYGE--------RRGAAFGLAGVVKGFGISSL---------KK--YGIAATLREGLADRNSAKRREGA 1399 (2622)
Q Consensus 1347 ~--------~~~~~~~--------r~~Aa~~L~~l~~~lg~~~l---------~~--~~i~~~L~~~l~~~~~~~~R~~a 1399 (2622)
. ...+... -..-..+++.+....|.... .. ...+..+..+.... +...-.-.
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~kit 371 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIFKIC 371 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 1 0101100 01223334443333221111 00 01233344444443 34333333
Q ss_pred HHHHHHHHHHhc-------------------------ccchhHHHHHHHHHHHHcCCCCH--------------------
Q 000050 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQVV-------------------- 1434 (2622)
Q Consensus 1400 l~al~~La~~~~-------------------------~~~~~~v~~ilp~ll~~l~D~~~-------------------- 1434 (2622)
+.....+.+.+- ..+.|++.++...++..+.-|++
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 333333333211 12566777777777776653211
Q ss_pred --HHHHHHHHHHHHHHHhhcH-HhHHhhHHHHHhhccC--CChhhHHHHHHHHHHHHhhCch-hhhhhhhhhHHHHhhhh
Q 000050 1435 --AVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVL 1508 (2622)
Q Consensus 1435 --~VR~aa~~al~~i~~~l~~-~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L 1508 (2622)
.+++..-+++..+. ++.+ +....+++.+-+.++. .+|....+.|.++|+|+.+... .-...+|.+++.|+.+.
T Consensus 452 ~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 13333334443332 3333 3345555655555443 4699999999999999876553 45678999999999888
Q ss_pred cCC-----CHHHHHHHHHHHHHHhhhcCC-h-hHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHH
Q 000050 1509 TDT-----HPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2622)
Q Consensus 1509 ~D~-----~~~VR~aA~~aL~~l~~~~~~-~-~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2622)
..+ .+.|+...+..+|+..+.+.+ + .+..++. .+
T Consensus 531 e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~---------------------------------------~L 571 (1073)
T 3gjx_A 531 EQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN---------------------------------------KL 571 (1073)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH---------------------------------------HH
T ss_pred ccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH---------------------------------------HH
Confidence 654 456777778899998877642 1 2233333 34
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-
Q 000050 1582 HRGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2622)
Q Consensus 1582 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~- 1654 (2622)
.+.+.+.++.++.+|+.++..+|..... +.+..||++.++..+.....+=.++-...-..++|.++...|.+.
T Consensus 572 ~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~ 651 (1073)
T 3gjx_A 572 FEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV 651 (1073)
T ss_dssp HHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence 4445555567777788888777765432 123568999999988888887778888899999999999887642
Q ss_pred chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHh--chhHHHhHhHHHHHhccCCChhhHH--HHHHHHHHhhhhhCcc
Q 000050 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEHILPDIIRNCSHQRASVRD--GYLTLFKYLPRSLGVQ 1730 (2622)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~--g~~~l~~llp~l~~~l~~~~~~vR~--~al~~l~~L~~~~g~~ 1730 (2622)
.+.++..++..... .+..+.... +.+.+ .+++ .++. ..+.+...++..+|..
T Consensus 652 ~~~~i~~Lm~~~~~------------~w~~l~~~~~~~~~~~-----------~d~~-~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 652 QEHLIEKYMLLPNQ------------VWDSIIQQATKNVDIL-----------KDPE-TVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp HHHHHHHHTHHHHH------------HHHHHHHHHHHCGGGG-----------GCHH-HHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHhhcCchhc-----------cChH-HHHHHHHHHhhhHHHHhhcchh
Confidence 23333333322110 111121110 11110 0100 0111 2345677888999999
Q ss_pred hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCc
Q 000050 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810 (2622)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~ 1810 (2622)
|.|++..+.+-++..-+ ..-..+...+..-|....+. ...+++ -.+|.+.+.++...+.+
T Consensus 708 f~~~~~~i~~~~l~~y~--------~~s~~i~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~----- 767 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLNVYK--------CLSENISAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR----- 767 (1073)
T ss_dssp GHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc-----
Confidence 99999998887664321 11111111111111110000 000110 01455555666555421
Q ss_pred ccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHh-c-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 000050 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-R-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2622)
Q Consensus 1811 ~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~-~-~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~ 1888 (2622)
.+| .+. +.+.+-+.-.+.++.. |.. . .-..++|-.....++..+....+..+..++..++.
T Consensus 768 --------~~~----~~~----v~~~~i~pl~~~vl~d-Y~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~ 830 (1073)
T 3gjx_A 768 --------SND----PQM----VAENFVPPLLDAVLID-YQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 830 (1073)
T ss_dssp --------CSC----HHH----HHHHTSHHHHHHTHHH-HHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHH
T ss_pred --------CCC----HHH----HHHHhHHHHHHHHHHH-HhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 011 111 1111111111111111 111 0 01233444444444444444444444555555555
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhh
Q 000050 1889 TLISSLA---SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2622)
Q Consensus 1889 ~L~~~L~---s~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~ 1954 (2622)
.-+++++ +..++.|..-.+.+..+...+.... ...++..+.-+++++.+++-..+...+.+++.+.
T Consensus 831 ~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~ 906 (1073)
T 3gjx_A 831 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 906 (1073)
T ss_dssp HHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHh
Confidence 5566665 4689999999999999998865542 2345555566677777777766666666666543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-10 Score=158.49 Aligned_cols=810 Identities=12% Similarity=0.097 Sum_probs=429.6
Q ss_pred HHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCC
Q 000050 1577 LVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1577 i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
+...+...+.. .++..|+.|.+.+..+-+. . .........+.++ ++.+|-.|+..|...+..+++
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-p----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~ 76 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSS-S----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNN 76 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-T----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-h----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCh
Confidence 34444333332 3688999999999887652 1 1334444555543 689999999999988886666
Q ss_pred C----CchhhHHHHHHHhhh----cCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCCh-hhHHHHHHHHHHh
Q 000050 1653 E----NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRA-SVRDGYLTLFKYL 1723 (2622)
Q Consensus 1653 ~----~~~~ll~~Ll~~L~~----~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~-~vR~~al~~l~~L 1723 (2622)
+ ....+-..++..+.. ..+..+|...+..++.++....++.|+.+++.+++.++..+. ..-...+..+..+
T Consensus 77 e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i 156 (980)
T 3ibv_A 77 ESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSI 156 (980)
T ss_dssp TTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 5 445555556555543 234557888888888888877777777777777776543322 1111122222222
Q ss_pred hhhhCcchhhhHHhHHHHHHhhcCCCCh-HHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000050 1724 PRSLGVQFQNYLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1724 ~~~~g~~f~p~l~~ii~~ll~~L~d~~~-~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
...+... .+....+ .-|...+ +.. +|... +..+
T Consensus 157 ~EEv~~~--------------~~~~~~~~~~r~~~l---kd~--------------------------m~~~~---~~~i 190 (980)
T 3ibv_A 157 GDEIADS--------------LVLKTDVQIQKDNLV---KDA--------------------------IRAND---MSDI 190 (980)
T ss_dssp HHHHCCC--------------CSCCCHHHHHHHHHH---HHH--------------------------HHHHT---HHHH
T ss_pred HHHHHhc--------------ccccCHHHHhhhHHH---HHH--------------------------HHhcc---HHHH
Confidence 1111110 0000000 0000000 000 00000 0000
Q ss_pred HHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHH
Q 000050 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI 1882 (2622)
Q Consensus 1803 l~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~ 1882 (2622)
. +.++..+..+....+..++..++++++..+.-.|-.+--
T Consensus 191 -------------------------------~--------~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~- 230 (980)
T 3ibv_A 191 -------------------------------V--------SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIV- 230 (980)
T ss_dssp -------------------------------H--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHH-
T ss_pred -------------------------------H--------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhh-
Confidence 0 001111111112245678889999999888754432211
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhH------HHHHhhhcC-CCChhhHHhHHHHHHHHHHh-
Q 000050 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSI------IPILSRGLK-DPSASRRQGVCIGLSEVMAS- 1953 (2622)
Q Consensus 1883 l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~l------lp~L~~~L~-d~~~~vR~~a~~~L~~li~~- 1953 (2622)
-+.+++.+.+.+.+ +..|..|+.||.+++.+.... ..-.+ .+.+..... +.|.+...+.|..+.++...
T Consensus 231 ~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l 308 (980)
T 3ibv_A 231 NEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVEL 308 (980)
T ss_dssp CHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 15677888888865 789999999999999875331 11111 122222222 45677665555443322211
Q ss_pred --h--Ch--------hhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---C-----hhhhhhhHHHHHHhc-
Q 000050 1954 --A--GK--------SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA---G-----MQAIDEIVPTLLHAL- 2012 (2622)
Q Consensus 1954 --~--~~--------~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~---g-----~~~~~~ilp~Ll~~L- 2012 (2622)
. .+ ....+++..+++.+..++.+++.+|-..+...+..+.... . .....++++.|++.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li 388 (980)
T 3ibv_A 309 VAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAII 388 (980)
T ss_dssp HHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH
Confidence 1 11 1233667889999999999988888877776666554321 1 122334444444333
Q ss_pred ---ccCC----------chhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCC-hhhhHh-hhHH
Q 000050 2013 ---EDDQ----------TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LNFHLG-TILP 2077 (2622)
Q Consensus 2013 ---~~~~----------~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~-l~~~l~-~il~ 2077 (2622)
+-++ +.+.....++.-+ ..+-....+.|.+ +..++- .+.+
T Consensus 389 ~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l-------------------------~~l~d~~~~l~~~~~l~~~~~~i~~ 443 (980)
T 3ibv_A 389 KKMKYDESQEWDDDPDSEEEAEFQEMRKKL-------------------------KIFQDTINSIDSSLFSSYMYSAITS 443 (980)
T ss_dssp HTTSCCTTCCCCCCSSSSTHHHHHHHHHHH-------------------------HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHccCCCccccccccchhHHHHHHHHHHHH-------------------------HHHHHHHHhcChHHHHHHHHHHHHH
Confidence 2111 1111111121111 1121122222322 223222 3333
Q ss_pred HHHHhcC---CCCHHHHHHHHHHHHHhhhccCh---------hcHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHHH
Q 000050 2078 ALLSAMG---DDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELLKGVG-----DNQASIRRSSAYLIGYFY 2140 (2622)
Q Consensus 2078 ~Ll~~l~---~~~~~vr~~a~~al~~l~~~~~~---------~~l~~ll~~Ll~~l~-----d~~~~vR~~A~~~L~~l~ 2140 (2622)
.+-+.+. +.++..++.++.++..+...+.. +.++.+++.+...+. ++.+.+|..++.+++.+.
T Consensus 444 ~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys 523 (980)
T 3ibv_A 444 SLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYA 523 (980)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTG
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3334442 24578899999999988876532 234455555555543 677999999999999887
Q ss_pred hhccccccccHHHHHHHHHH--HhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCcccc
Q 000050 2141 KNSKLYLVDEAPNMISTLIV--LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILI 2218 (2622)
Q Consensus 2141 ~~~~~~l~~~~~~il~~L~~--~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l 2218 (2622)
+-... -..+++.+++.++. .+.+++..|+.+|+.++.++++.+++...+ +++.+.+.+...-.. . ..
T Consensus 524 ~~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~-~~~~il~~l~~lL~~------~---~~ 592 (980)
T 3ibv_A 524 SFFDY-ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN-YTESSLAMLGDLLNI------S---VS 592 (980)
T ss_dssp GGGGT-CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS-SHHHHHHHTTGGGCC------C---CC
T ss_pred HHHhc-CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh-HHHHHHHHHHHhhcC------c---CC
Confidence 64422 23678888888888 777889999999999999999988765433 333333333221000 0 00
Q ss_pred ccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcC--hhhhhhhhhhhhHHHHHhhc----CCCCH-hhHH-
Q 000050 2219 PGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIG----DRFPW-QVKS- 2290 (2622)
Q Consensus 2219 ~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~--~~~l~p~v~~i~~~Li~~l~----~~~~~-~vk~- 2290 (2622)
+.- .+++....+..+ ..++..+.+....+++|.++...+ ++.-..++..+.+|++..+. ..... +-+.
T Consensus 593 ~~~-~~~~~~~~~~~~---~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~ 668 (980)
T 3ibv_A 593 PVT-DMDAPVPTLNSS---IRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIIS 668 (980)
T ss_dssp CCC-C--CSSCCHHHH---HHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHH
T ss_pred CCC-cccccccchhhh---cccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHH
Confidence 000 000111111111 112234566778899999997754 45567788888888776543 21111 1111
Q ss_pred --HHHHHHHHHHHhcCCC---ccC---chHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHh-cccChhhHHHHHHHhhh
Q 000050 2291 --AILSTLSIIIRKGGIA---LKP---FLPQLQTTFIKCLQD--STRTVRSSAALALGKLSA-LSTRVDPLVGDLLSSLQ 2359 (2622)
Q Consensus 2291 --~al~~L~~L~~~~~~~---l~p---~l~~L~~~llk~L~d--~~~~vR~~Aa~aLg~L~~-~~~~~~~ll~~Ll~~l~ 2359 (2622)
..+.+++.+++..+.. ..| .+.+..+.++..+.. .+..||.++..++.+++. +++.+.|++|.+++.+-
T Consensus 669 i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 669 VYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence 4566677777765321 122 233566677777763 489999999999999954 46667778887777663
Q ss_pred c-CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH----HHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHH
Q 000050 2360 V-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVL----KDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2622)
Q Consensus 2360 ~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L----~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2622)
. -+..--...+..+..++...|..+ .+....++..+ ...+..+.. +.+.+.. ...
T Consensus 749 ~~~~~~e~~~fL~l~~qli~~f~~~~-~~~l~~ll~~l~~~if~~l~~~~~-----------------~td~~r~--~~~ 808 (980)
T 3ibv_A 749 NSIDMNELVDVLSFISQLIHIYKDNM-MEITNRMLPTLLMRIFSSLSAAPQ-----------------GTDDAVK--QND 808 (980)
T ss_dssp HHCCTTTHHHHHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTC---------------------CCHHHH--HHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCC-----------------CcHHHHH--HHH
Confidence 2 233335567899999999998875 33333333332 223322210 0011110 000
Q ss_pred HhhcCCCCchhhHhHHHHHHHHHhhCCcccc-C---ChhHHHHHHHHHhhhcc-CChhHHHhHHHHHHHHHhhhhh-c-C
Q 000050 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAIS-M---SPLFLSILDRLKSSLKD-EKFPLREASTKALGRLLLHQIQ-S-G 2507 (2622)
Q Consensus 2435 l~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~-~---~~~~~~i~~~l~~~~~~-~~~~ir~~a~~alg~ll~~~~~-~-~ 2507 (2622)
.++.....+..+++..-..++ . .+..+.++..+.....+ .++..++.|+..+.+++...+. . .
T Consensus 809 ----------l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~ 878 (980)
T 3ibv_A 809 ----------LRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGI 878 (980)
T ss_dssp ----------HHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------
T ss_pred ----------HHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcc
Confidence 122233334445543322332 1 23466777777755444 6789999999999999888643 2 3
Q ss_pred CCCchhhHhHHHHHHhhcCCCCHHHHHH--------HHHHHHHHHhhCchhhhhhH
Q 000050 2508 PANTTVVVDILASVVSALHDDSSEVRRR--------ALSALKSVAKANPSAIMVHV 2555 (2622)
Q Consensus 2508 ~~~~~~l~~~l~~l~~~l~d~s~dvr~~--------a~~~l~~~a~~~~~~v~~~l 2555 (2622)
|++...+-++++.+...+.+++-|.+-+ ....++.+-.+.++....||
T Consensus 879 ~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l 934 (980)
T 3ibv_A 879 AGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYL 934 (980)
T ss_dssp CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5566666557777777766666655443 33444444444444444444
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-12 Score=182.29 Aligned_cols=506 Identities=11% Similarity=0.057 Sum_probs=324.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchh-hhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPK 1499 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ 1499 (2622)
-+|.++..+.+++..+|.++...++..-.. .-....+|.++..|.+.+..+|..|+.+|+.++...+.. .....+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 367788888888889998887777644211 112567888888888889999999999999998743322 1112357
Q ss_pred hHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000050 1500 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1500 ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
+++.|++.|.+ .++.+|..|+.+|..++..-. .. .. +. -...+
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~---~~---~~------------------i~------------~~g~I 236 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE---GL---LA------------------IF------------KSGGI 236 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH---HH---HH------------------HH------------HTTHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch---hH---HH------------------HH------------HcCCH
Confidence 88999988875 489999999999999875311 00 00 00 01256
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---- 1653 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---- 1653 (2622)
|.|.+.+.+.+..+|..|+.+|.+++..... ....+. ...++.+..++.++++.++..+..++..++....+.
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 7777788888889999999999999875211 111121 468899999999999999999999999887521110
Q ss_pred CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch-hHH--HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcc
Q 000050 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2622)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~-~~l--~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 1730 (2622)
.-...++.|+..+++......+..++..+..++..-.. ..+ ...++.++..+.+.+..++..++.++..++...+..
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh
Confidence 11256778888887665543333445555555431111 111 346788888888888999999999999998765431
Q ss_pred hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc--h-h-hhhHHHHhhccCC-Cch-HHHHHHHHHHHHHHH
Q 000050 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--S-L-PLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLF 1804 (2622)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~--~-i-~~llp~l~~~l~d-~~~-rvR~~a~~ll~~ll~ 1804 (2622)
.....++|.+.+.+.+.+..+|..|..++..+....... . + ...+|.+.+.+.+ .++ .+|..++.+++.+..
T Consensus 395 --~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 395 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp --SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 123568999999999999999999999998875422110 0 0 1245555555544 233 788888888887621
Q ss_pred HhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHhhChhhHHHHH
Q 000050 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM 1883 (2622)
Q Consensus 1805 ~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~p~~l~~~l 1883 (2622)
...+ .+.....+... ..++.+...+.+.+ +.+|..|+.+++.++.+... ...+.
T Consensus 473 --------------~~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~ 527 (780)
T 2z6g_A 473 --------------RHQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLR 527 (780)
T ss_dssp --------------SSTT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHH
T ss_pred --------------cCch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 0001 01011112111 12344444444444 58999999999999863322 12222
Q ss_pred -HHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCCh
Q 000050 1884 -PVLMNTLISSLASSS----------------------SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSA 1937 (2622)
Q Consensus 1884 -~~ll~~L~~~L~s~~----------------------~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~ 1937 (2622)
..+++.++..+.+.+ .+++..++.+|+.++...... .-...+|.|...+.++++
T Consensus 528 ~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred HCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCH
Confidence 124455555544322 346667778887765311100 124568888899999999
Q ss_pred hhHHhHHHHHHHHHHhhChhhHHHhH--HhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 000050 1938 SRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2622)
Q Consensus 1938 ~vR~~a~~~L~~li~~~~~~~l~~~l--~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g 1997 (2622)
+++..++.+|+.+... + .....+ ...++.+..++.+++++||..|..++..+....+
T Consensus 608 ~v~~~a~~aL~~L~~~--~-~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcC--H-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999987532 2 222223 2368888899999999999999999999876544
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-12 Score=176.36 Aligned_cols=387 Identities=14% Similarity=0.107 Sum_probs=278.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCc---cchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000050 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2622)
Q Consensus 1339 i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~---~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~ 1415 (2622)
++.+++.|. +++...|..|+..|..++.+... ..+....+++.|.+++.+..++..|..|+.+++.++.+.+....
T Consensus 76 l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 556666664 44678888899998888765431 12223467888889998874599999999999999875332122
Q ss_pred hHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhc-cCCChhhHHHHHHHHHHHHhhC
Q 000050 1416 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCA 1489 (2622)
Q Consensus 1416 ~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L-~~~~w~~r~~a~~~L~~la~~~ 1489 (2622)
..+. ..+|.++..+.++++.||..|..++..++..-+.. .+ ...+|.++..+ .+.++.++..++.+|+.++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 2222 58999999999999999999999999997643322 11 35789999999 6788999999999999999875
Q ss_pred chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccC
Q 000050 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569 (2622)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~ 1569 (2622)
|.........++|.|..++.+.++.|+..|+++|+.++.... ...+. +.
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~----------------------~~-------- 283 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQA----------------------VI-------- 283 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHH----------------------HH--------
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHH----------------------HH--------
Confidence 544344457889999999999999999999999999985321 10010 00
Q ss_pred ChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH-hhhHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Q 000050 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1570 ~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~-~~~vR~~a~~aL~~L~ 1647 (2622)
-..++|.|...+.+.++.++..|+.++++++.. .+......+ ..+++.|..++.++ ++.+|..|+.+|+.++
T Consensus 284 ----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 284 ----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp ----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred ----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 012466777777777889999999999999863 211111111 35788899999988 9999999999999998
Q ss_pred hhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHHHHHH
Q 000050 1648 RGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLT 1718 (2622)
Q Consensus 1648 ~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~al~ 1718 (2622)
....+. .-..++|.|+..+.+. ...+|..++.+|+.++.....+.. ...++.++..+.+.++.++..++.
T Consensus 358 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~ 436 (528)
T 4b8j_A 358 AGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLE 436 (528)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 632211 1236788888888776 456888999999998876434322 356889999999999999999999
Q ss_pred HHHHhhhhhCc-------chhhh---HHh--HHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000050 1719 LFKYLPRSLGV-------QFQNY---LQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2622)
Q Consensus 1719 ~l~~L~~~~g~-------~f~p~---l~~--ii~~ll~~L~d~~~~VR~~al~al~~l 1764 (2622)
++..+....+. ...+| +.. .++.+.....+++++++..|...+..+
T Consensus 437 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 437 GLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999875433 11223 222 355666667777778877776666543
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-13 Score=180.59 Aligned_cols=383 Identities=13% Similarity=0.093 Sum_probs=283.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhccCC-ChhhHHHHHHHHHHHHhhCch
Q 000050 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQ 1491 (2622)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~ 1491 (2622)
....+|.++..+.++++.+|..|..+++.++..-.. ..+ ..++|.+++.|.++ ++.++..++.+|+.++...+.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 334578888888988999999999999888654211 111 46899999999987 899999999999999986554
Q ss_pred hhhhh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-h-h-H-HhHHHHHHhhcCCCChhHH-HHHHHHHhcc-
Q 000050 1492 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-E-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTT- 1564 (2622)
Q Consensus 1492 ~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~-i-~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~- 1564 (2622)
..... -..++|.|+.++.++++.||..|+++|+.++..-.. . . + ...+|.|+..+.+++..++ .++.++....
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 43222 157889999999999999999999999999864211 1 1 1 4678999999988777666 4555554321
Q ss_pred cc-ccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHH
Q 000050 1565 FV-NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARA 1642 (2622)
Q Consensus 1565 ~~-~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~a 1642 (2622)
.. ..........++|.|...+.+.++.++..++.++++++.. .+....... ..+++.+..++.++++.+|..|+.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 11 2223344567889999999999999999999999999863 211122222 2678999999999999999999999
Q ss_pred HHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HH-HhHhHHHHHhccCCChhhHH
Q 000050 1643 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRD 1714 (2622)
Q Consensus 1643 L~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~ 1714 (2622)
|+.++...+.. .-..++|.++..+.+. ...+|..++.+|+.++...... .+ ..++|.++..+.++++.+|.
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 401 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 99998643211 1136788888888766 4668889999999887532211 11 45788899888889999999
Q ss_pred HHHHHHHHhhhhhCc--chhhhHHh--HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc----------hhh-----h
Q 000050 1715 GYLTLFKYLPRSLGV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----L 1775 (2622)
Q Consensus 1715 ~al~~l~~L~~~~g~--~f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~----------~i~-----~ 1775 (2622)
.++.+++.++...+. ....++.. ++|.+...+.+.++.+|..++.++..++...... ... .
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence 999999999886544 44444433 8999999999999999999999999888654321 111 1
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000050 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1776 llp~l~~~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
.++.+.....+.+..++..+...+..++
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 3566777778888889888888887763
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=164.96 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=170.0
Q ss_pred cCCChHHHHHHHHHHHH-HHhhhCcc---chhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccch-hHHHHH
Q 000050 1348 KSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQM 1421 (2622)
Q Consensus 1348 ~~~~~~~r~~Aa~~L~~-l~~~lg~~---~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~-~~~~-~~v~~i 1421 (2622)
.+.+|.+|+.|...|.. ++.+.+.- ......+++.+.+.+.++.|..+|..|+.+++.++++++ ..|. +|...+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 57789999999999999 88663321 112236888999999433489999999999999999999 8899 999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc---hhhh
Q 000050 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2622)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p---~~l~ 1494 (2622)
+|.++..++|..+.||+++..++..++..+++.. ...+++.++..+.+++|++|.+++.+|+.++...+ ..+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 9999999999999999999999999999885432 45899999999999999999999999999998766 6788
Q ss_pred hhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHH
Q 000050 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2622)
Q Consensus 1495 ~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~L 1542 (2622)
.++ +.++|.+.++++|+++.||.+|..+++.++..+++..+.++++.|
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899 999999999999999999999999999999999987777776665
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-12 Score=176.60 Aligned_cols=389 Identities=14% Similarity=0.112 Sum_probs=284.6
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc-hHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCCC
Q 000050 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1576 ~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~-~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
..+|.+...+.+.++.+|..|+..+..++..-..+ .... .-..++|.|.+.+.++ ++.+|..|+.+|+.++....+.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~-~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRP-PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSC-SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35677788888888999999999999887642121 1111 1235889999999987 8999999999999998632211
Q ss_pred --C--chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhc--hhH-H-HhHhHHHHHhccCCChhhHHHHHHHHHHhhh
Q 000050 1654 --N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG--TVY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2622)
Q Consensus 1654 --~--~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g--~~~-l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~ 1725 (2622)
. -...+|.|+..+.+. +..+|..++.+|+.++.... .+. . ...+|.++..+.+.++.+|..++.++..++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 1 146788888888765 45688889999998875321 111 1 4578899999998999999999999999997
Q ss_pred hh-CcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh---chh-hhhHHHHhhccCCCchHHHHHHHHHHH
Q 000050 1726 SL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSL-PLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2622)
Q Consensus 1726 ~~-g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~---~~i-~~llp~l~~~l~d~~~rvR~~a~~ll~ 1800 (2622)
.. +..-..+...++|.++..+.+.++.+|..++.++..+....+. ..+ ..++|.+...+.+.+|.+|..++..++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 54 2222345677999999999999999999999999888743221 111 247788888889999999999999999
Q ss_pred HHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHH
Q 000050 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2622)
Q Consensus 1801 ~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~ 1880 (2622)
.+... + + .....+.+ ..+++.+...+.+.++.+|..|+.+++.++...+....
T Consensus 325 ~l~~~---------------~-~----~~~~~~~~-------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 325 NIVTG---------------N-D----LQTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp HHTTS---------------C-H----HHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHcC---------------C-H----HHHHHHHH-------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 87411 0 0 11111111 12555666667788999999999999999987665554
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--c-----hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000050 1881 EIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--R-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1881 ~~l-~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~--~-----~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~ 1952 (2622)
.++ ..+++.++..+.+.++.+|..|+.+|+.++...+. . ....++|.|...+.++++.+|..++.+|..++.
T Consensus 378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444 35677888888888999999999999999886443 2 123578888888999999999999999999876
Q ss_pred hhChh---------hHHHhH--HhHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000050 1953 SAGKS---------QLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2622)
Q Consensus 1953 ~~~~~---------~l~~~l--~~ll~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2622)
..... .....+ ...++.+..++.++++++++.|..++..+.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 458 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 54321 111112 234677777888999999999888877664
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=163.69 Aligned_cols=194 Identities=18% Similarity=0.230 Sum_probs=166.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhhCc-cchhhhcHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcccchhHHH
Q 000050 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2622)
Q Consensus 1342 Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~~l~-~~~~~~~R~~al~al~~La~~~~~~~~~~v~ 1419 (2622)
+++.+ ++.+|..|++|+.+|..++.+.+. .......+++.+...+. +. +..+|.+|+.+++.++..+|..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444 567899999999999999987432 11112378899999995 66 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhC-ch-hhhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~-~l~~~L 1497 (2622)
.++|.++..++|+++.||+++..++..++...+ +..++|.+...+.+++|++|..++..|+.++... |+ ....++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999988764 5788999999999999999999999999977654 55 357789
Q ss_pred hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHH
Q 000050 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2622)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp 1540 (2622)
+.++|.+..+++|++++||.+|..+++.++..+++..+..+++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999999999988654554443
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-12 Score=171.19 Aligned_cols=384 Identities=15% Similarity=0.128 Sum_probs=281.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhHH-HHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHHh-
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYV-IQMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQG- 1455 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~-~~~~~~v-~~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~~- 1455 (2622)
++.+.+.+.+. ++..|..|+.++..++...+ ......+ ..++|.++.++.+++ +.+|..|..++..++...+...
T Consensus 76 l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 55666677766 79999999999988876543 2122222 257999999999886 9999999999999987433321
Q ss_pred -H--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhc
Q 000050 1456 -V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1456 -v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
+ ...+|.++..|.+++..++..++.+|+.++...+......+ ..++|.|+.++ .+.++.|+..|+++|..++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 1 35899999999999999999999999999976554221111 35788899999 6789999999999999998643
Q ss_pred CChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCC
Q 000050 1531 KNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2622)
Q Consensus 1531 ~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 1610 (2622)
+++.. .....++|.|...+.+.+++++..++.++++++.. ..
T Consensus 235 ~~~~~------------------------------------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~ 276 (528)
T 4b8j_A 235 PQPSF------------------------------------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TN 276 (528)
T ss_dssp SCCCH------------------------------------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CH
T ss_pred CCCcH------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CH
Confidence 22110 01123566667777777888999999999988753 21
Q ss_pred Ccccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHH
Q 000050 1611 KDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2622)
Q Consensus 1611 ~~l~~~-l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i 1685 (2622)
...... -..+++.+..++.++++.+|..|+.+|+.++...... .-..++|.|...+.+.....+|..++.+|+.+
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 111111 2357899999999999999999999999998632211 12457888888887663566888999999998
Q ss_pred HHHhchh--H-H-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHH
Q 000050 1686 LAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALG 1759 (2622)
Q Consensus 1686 ~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~ 1759 (2622)
+...... . . ..++|.++..+.+.++.+|..++.+++.++.........|+ ..+++.+...+.+.++.++..++.
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~ 436 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLE 436 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 7632211 1 1 36788999998888999999999999999987555555665 358999999999999999999999
Q ss_pred HHHHHHHHhhhc-------------hhh--hhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000050 1760 AGHVLVEHYATT-------------SLP--LLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1760 al~~lv~~~~~~-------------~i~--~llp~l~~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
++..++...... .+. ..++.+.....+.+..++..+..++..+
T Consensus 437 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 437 GLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999988654321 111 1345566666777888888888877765
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-11 Score=172.28 Aligned_cols=460 Identities=11% Similarity=0.073 Sum_probs=314.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc-----hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-ccch
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSL 1374 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~-----~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg-~~~l 1374 (2622)
.++.|+..++++++.||..++.+|..+....... ....++.++..|..+++...|..|+..|..+..... ...+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 4677788888999999999999998887543221 235788888888876678899999999987765321 1112
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000050 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2622)
Q Consensus 1375 ~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2622)
.....++.|.+++++. ++..|..|+.++..++.........++ ...+|.++..+.++++.++..+..++..++..-+.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 2236788899999887 789999999999999976543222332 36899999999999999999888888888653222
Q ss_pred H--h--HHhhHHHHHhhccCCC-hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1454 Q--G--VKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1454 ~--~--v~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
. . -...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.+..++..++++|..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1 1 1356778888777654 455677888888887643221111113578999999999999999999999999976
Q ss_pred hcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcC
Q 000050 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2622)
Q Consensus 1529 ~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2622)
...+.. ....++|.|.+.+.+.++++|..++.++++++..
T Consensus 254 ~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-- 293 (644)
T 2z6h_A 254 AATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 293 (644)
T ss_dssp GCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred cchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 432100 0113566667777777888899999999888763
Q ss_pred CCCcccc-hHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhhhcCChHHHHHH
Q 000050 1609 EPKDMIP-YIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2622)
Q Consensus 1609 ~~~~l~~-~l~~ll~~L~~~L~d~--~~~vR~~a~~aL~~L~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~r~~a 1678 (2622)
.+..... .-...++.|..++.+. .+.+|..|+.+|+.++...++. .....+|.|.+.|.+.....++..+
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 1111000 1123677777777652 3799999999999997543321 0135688888888876555678888
Q ss_pred HHHHHHHHHHhchh-HH--HhHhHHHHHhccCC----------------------ChhhHHHHHHHHHHhhhhhCcchhh
Q 000050 1679 AQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2622)
Q Consensus 1679 ~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~----------------------~~~vR~~al~~l~~L~~~~g~~f~p 1733 (2622)
+..++.+...-... .+ ...+|.+++.+.+. +..+++.++.++..++..... ..
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~--~~ 451 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RI 451 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHH--HH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHH--HH
Confidence 88888876422111 11 34566666655443 245666777777777653321 22
Q ss_pred hH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh-hchh--hhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000050 1734 YL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1734 ~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~-~~~i--~~llp~l~~~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
.+ ...+|.+...+.+.+++++..+..++..+...-. ...+ ...++.+.+.+.+++..+|..+...++.+.
T Consensus 452 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 22 3478999999999999999999988877653200 0111 124667778888999999999999998873
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-09 Score=147.69 Aligned_cols=771 Identities=11% Similarity=0.076 Sum_probs=407.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhh----Cchhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC----APQQLSQC 1496 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~----~p~~l~~~ 1496 (2622)
.+..++..+.+++...|+.|..-+..+-.. +..+.... .++. .+.+..+|..|+..|...... .|..-...
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~aw~~~~-~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKAD-QILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TTGGGGHH-HHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--ccHHHHHH-HHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 344444445455556888888888777443 23333322 2332 234568899888888766542 22222222
Q ss_pred h-hhhHHHHhhhhcCC-----CHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCC
Q 000050 1497 L-PKIVPKLTEVLTDT-----HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2622)
Q Consensus 1497 L-~~ivp~L~~~L~D~-----~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~ 1570 (2622)
+ ..++..+.....++ .+.|+...+.++..++...-...+..+++.+...+..........+..+..
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~-------- 163 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKL-------- 163 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHHH--------
Confidence 2 33445544444332 466778888889888876533445677888887775432222112221110
Q ss_pred hhhhhhHHHHHHhhhcCC-CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHh
Q 000050 1571 APSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1571 ~~~l~~i~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~ 1648 (2622)
+...+...-.+. ...-|...-+.+ . ...+.+++.+...+. ...+.+...+.+++++...
T Consensus 164 ------L~EEV~~~~~~~l~~~r~~~lk~~l---~----------~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~ 224 (1023)
T 4hat_C 164 ------LSEEVFDFSAEQMTQAKALHLKNSM---S----------KEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLH 224 (1023)
T ss_dssp ------HHHHHHTSCTTTSCHHHHHHHHHHH---H----------HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHhhhccchHHHHHHHHHHH---H----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 000111000000 111111111111 1 112334444444443 2345666667777777665
Q ss_pred hhCCCC--chhhHHHHH-HHhhhcCChHHHHHHHHHHHHHHH-Hh-ch-----hHHHhHhHHHHHhc-------------
Q 000050 1649 GMGEEN--FPDLVSWLL-DALKSDNSNVERSGAAQGLSEVLA-AL-GT-----VYFEHILPDIIRNC------------- 1705 (2622)
Q Consensus 1649 ~~g~~~--~~~ll~~Ll-~~L~~~~~~~~r~~a~~~L~~i~~-~~-g~-----~~l~~llp~l~~~l------------- 1705 (2622)
-+.-.+ -..+++.++ ..+.+ ...|..++.++.+++. .. +. +.+..+++.++..+
T Consensus 225 WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~ 301 (1023)
T 4hat_C 225 WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKA 301 (1023)
T ss_dssp TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHH
T ss_pred hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence 443221 235666666 44432 2356667777777664 11 11 11111112221111
Q ss_pred -----cCCChhhHHHHHHHHHHhhhhhC------cchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhh
Q 000050 1706 -----SHQRASVRDGYLTLFKYLPRSLG------VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774 (2622)
Q Consensus 1706 -----~~~~~~vR~~al~~l~~L~~~~g------~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~ 1774 (2622)
.+.+.+.-++...+|..+..... +.+.+.+...+..++.+-..++.++-..++..+..+.+..-.+
T Consensus 302 ~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e--- 378 (1023)
T 4hat_C 302 TYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE--- 378 (1023)
T ss_dssp HHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS---
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc---
Confidence 11223333444444444443322 2334444445556777766777777777777776665432111
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCC-------CcccHHH---HHHHH---HHHhChhh
Q 000050 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDD-------EGASTEA---HGRAI---IEVLGRDK 1841 (2622)
Q Consensus 1775 ~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dd-------e~~~~~~---~~~~l---~~~Lg~e~ 1841 (2622)
| ......+-...+++..++.++.-...-...++++++ +.+..+. .+..| ....+.+.
T Consensus 379 ---~-------~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~ 448 (1023)
T 4hat_C 379 ---P-------LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDT 448 (1023)
T ss_dssp ---T-------TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---h-------HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHH
Confidence 0 000012222334555555554322110001111000 1111111 11111 11122222
Q ss_pred HHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHH
Q 000050 1842 RNEVLAALYMVRS--DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-----SSSERRQVAGRALGELV 1913 (2622)
Q Consensus 1842 ~~~il~~L~~~~~--D~~~~VR~aA~~~l~~l~~~~p~-~l~~~l~~ll~~L~~~L~s-----~~~~~R~~A~~~L~~lv 1913 (2622)
...+++.+..... +.+|..|++++-++|+++.+... ...++++.+++.++..+.+ +...+|..++.++|+..
T Consensus 449 ~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 449 EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp HHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 2223333322222 36899999999999999986543 4678999999999988752 34456777889999887
Q ss_pred HHhcc--chhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhH-------HHhHHhHHHHHHHHhcCCcHHHHHH
Q 000050 1914 RKLGE--RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRES 1984 (2622)
Q Consensus 1914 ~~~~~--~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l-------~~~l~~ll~~l~~~L~d~d~~VR~~ 1984 (2622)
+.+.. ..++.+++.+.+++.++++.+...||.++..++..++.... .+|++.++..+.....+-++.-+..
T Consensus 529 ~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 76643 36888888888999888999999999999999988765432 4688999998888887778888888
Q ss_pred HHHHHHHHHHHhChhh-hhhhHHHHHHhcccCCchhHHHHHHHHHHhh--hcccccc--chhhhhhcCCCchHHHHHHHH
Q 000050 1985 AGLAFSTLFKSAGMQA-IDEIVPTLLHALEDDQTSDTALDGLKQILSV--RTTAVLP--HILPKLVHLPLSAFNAHALGA 2059 (2622)
Q Consensus 1985 A~~al~~l~~~~g~~~-~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~--~~~~ilp--~Lip~L~~~~~~~~~~~aL~s 2059 (2622)
+.++++.+.+..+... ..+++..|+..+ ...+.+++.. ....++. .-+..+ ....+++++
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~---------~~~~~~l~~~~~~~~~~~~d~~~~~~l------~~il~~~~~ 673 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLP---------NMAWDTIVEQSTANPTLLLDSETVKII------ANIIKTNVA 673 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHH---------HHHHHHHHHHHHHCTTGGGCHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhH---------HHHHHHHHHHHhcCchhhcCHHHHHHH------HHHHHHHHH
Confidence 9999999988876432 333443333222 1112222211 0000000 000000 012346667
Q ss_pred HHHHhCCChhhhHhhhHHHHHHhcCC-----------------CCHHH------HHHHHHHHHHhhhccCh------hcH
Q 000050 2060 LAEVAGPGLNFHLGTILPALLSAMGD-----------------DDMDV------QSLAKEAAETVTLVIDE------EGV 2110 (2622)
Q Consensus 2060 La~~~g~~l~~~l~~il~~Ll~~l~~-----------------~~~~v------r~~a~~al~~l~~~~~~------~~l 2110 (2622)
++...|..+.|++..+++.+++..+. +.+.+ |...+.-+...+....+ .-+
T Consensus 674 v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~ 753 (1023)
T 4hat_C 674 VCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLV 753 (1023)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhH
Confidence 77778999999999999888865321 11222 22233333333333221 124
Q ss_pred HHHHHHHHhhcCCCChhHHH-HHHHHHHHHHhhccccccccHHHHHHHHHH----HhcC---CChhHHHHHHHHHHHHHh
Q 000050 2111 ESLVSELLKGVGDNQASIRR-SSAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLSD---SDSTTVAAAWEALSRVVA 2182 (2622)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~-~A~~~L~~l~~~~~~~l~~~~~~il~~L~~----~l~d---~d~~V~~~a~~aL~~l~~ 2182 (2622)
++++..++.-.....+..|- ..+.+...++...+..+.+.++.++..++. ++++ ..++.|..-..-+.++..
T Consensus 754 ~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~ 833 (1023)
T 4hat_C 754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINE 833 (1023)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 55555555555444455554 345555666776666677777777777654 3443 457778777777777766
Q ss_pred hcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCh
Q 000050 2183 SVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262 (2622)
Q Consensus 2183 ~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~ 2262 (2622)
+++...+. +| +.....++..++-++.....++-..+...+.++......
T Consensus 834 ~~f~~~~~---------------------------~~----~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~ 882 (1023)
T 4hat_C 834 KSFAAFLE---------------------------LP----PAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER 882 (1023)
T ss_dssp HCTHHHHT---------------------------SC----HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HChHHHHc---------------------------CC----HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 65432110 00 122344566666677777777777777777666654321
Q ss_pred --------hhhhhhhhhhhHHHHHhhcCCCC
Q 000050 2263 --------QSLKEFVIPITGPLIRIIGDRFP 2285 (2622)
Q Consensus 2263 --------~~l~p~v~~i~~~Li~~l~~~~~ 2285 (2622)
.-++.|...+..-++.++.|..+
T Consensus 883 ~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h 913 (1023)
T 4hat_C 883 MGNVPFANEFHKNYFFIFVSETFFVLTDSDH 913 (1023)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 11334445555555566666533
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-11 Score=167.85 Aligned_cols=466 Identities=14% Similarity=0.079 Sum_probs=315.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhH--HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhcHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY--VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQ 1454 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~--v~~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~l~~~ 1454 (2622)
..++.|.+.+.+. ++.+|..|+.++..++...... ... ...+++.++..+.+ +++.+|..|..++..+...-...
T Consensus 14 g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 14 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 5677788888876 7999999999999998754311 111 13678888888875 48899999999988765432211
Q ss_pred -hH--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhc
Q 000050 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
.+ ...+|.+++.+.+++..++..++.+|..++...+...... -..++|.|++++.+.+++++..++.+|..++...
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 11 3578999999999999999999999999998754332222 2578999999999999999999999999998531
Q ss_pred CC-h-hH--HhHHHHHHhhcCCCCh-hHH-HHHHHHHhccccccCChhh-hhhHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 000050 1531 KN-P-EI--ASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDAPS-LALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2622)
Q Consensus 1531 ~~-~-~i--~~ilp~Ll~~l~d~~~-~~r-~al~~L~~~~~~~~~~~~~-l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l 1603 (2622)
.. . .+ ...++.|.+.+.+++. ..+ .++..+............. -...+|.+.+.+.+.+..++..++.++.++
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11 1 11 3567888888876643 333 3444443222211111111 124688889999888999999999999999
Q ss_pred hhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcC-ChHHHHHH
Q 000050 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDN-SNVERSGA 1678 (2622)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~-~~~~r~~a 1678 (2622)
+..... . .....+++.|..++.++++++|..++.+|+.++..-.+. .-...++.|+..+.+.. ...++..+
T Consensus 252 ~~~~~~-~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 252 SDAATK-Q---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp GGGCTT-C---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcchh-h---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence 875322 1 223468999999999999999999999999997642111 11346788888887643 25678888
Q ss_pred HHHHHHHHHHhchh-----HH--HhHhHHHHHhccCCC-hhhHHHHHHHHHHhhhhhCcchhhhH-HhHHHHHHhhcCCC
Q 000050 1679 AQGLSEVLAALGTV-----YF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADE 1749 (2622)
Q Consensus 1679 ~~~L~~i~~~~g~~-----~l--~~llp~l~~~l~~~~-~~vR~~al~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~ 1749 (2622)
+.+|+.+....+.. .+ ...+|.+++.+.+.+ +.+|..++.+++.++..-... .... ..++|.+...+.+.
T Consensus 328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~ 406 (644)
T 2z6h_A 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA 406 (644)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhcc
Confidence 88888886432321 11 356888898888764 799999999999988643221 1111 23666666665542
Q ss_pred ----------------------ChHHHHHHHHHHHHHHHHhhh-chh--hhhHHHHhhccCCCchHHHHHHHHHHHHHHH
Q 000050 1750 ----------------------NESVRDAALGAGHVLVEHYAT-TSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2622)
Q Consensus 1750 ----------------------~~~VR~~al~al~~lv~~~~~-~~i--~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~ 1804 (2622)
++.++..+..++..+...... ..+ ...+|.+.+.+.+.+..++..++..+..+..
T Consensus 407 ~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 345666777777765432111 111 2367888888888899999998888887641
Q ss_pred HhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhh
Q 000050 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2622)
Q Consensus 1805 ~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~ 1878 (2622)
. .+....+ ...| .+..+.....+.+..||+.|..+++.+....+..
T Consensus 487 ~---------------------~~~~~~i-~~~g------~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~ 532 (644)
T 2z6h_A 487 D---------------------KEAAEAI-EAEG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532 (644)
T ss_dssp S---------------------HHHHHHH-HHTT------CHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHH
T ss_pred C---------------------HHHHHHH-HHcC------ChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHh
Confidence 0 0111122 2222 2334445568889999999999999998766543
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-12 Score=170.98 Aligned_cols=504 Identities=14% Similarity=0.085 Sum_probs=311.3
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHh
Q 000050 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2622)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2622)
-..|.+++...|..+. .+.+.-.+.++.+....+.+++.+.+++...|+-+...+..++...++. ..-++..+.
T Consensus 40 r~~l~~~~~~~k~~~l--~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~----~~l~in~l~ 113 (618)
T 1w63_A 40 RSSFREEDNTYRCRNV--AKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV----HLLMTNCIK 113 (618)
T ss_dssp HHHHTTTCTTTHHHHH--HHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHH--HHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH----HHHHHHHHH
Confidence 3344444444444432 2222223334445667777888888888888887777777776554432 234567777
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhh
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2622)
+-++|+++.||..|.++|+.++. ..-...++|.+.+.+.|++..+| .|+.++... .. ..+.....+++.+...
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l--~~-~~p~~v~~~~~~l~~l 187 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHV--IR-KVPELMEMFLPATKNL 187 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--HH-HCGGGGGGGGGGTTTS
T ss_pred HhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HH-HChHHHHHHHHHHHHH
Confidence 88899999999999999999873 12346778889999999999988 344444331 00 1122334567777888
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc---------------CCCHHHHHHHHHHHHHHHhh
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~---------------d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
+.|+++.++..|..++..++.. +++ ...++..++|.+...|. .+++-.+....++++.+...
T Consensus 188 L~D~d~~V~~~Al~~L~~i~~~--~~~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 188 LNEKNHGVLHTSVVLLTEMCER--SPD-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCS--HHH-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred hCCCCHhHHHHHHHHHHHHHHh--ChH-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 8999999999999999988753 211 12233344555544433 24688888889999887753
Q ss_pred hCC--CCchhhHHHHHHHhhhc--CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhh
Q 000050 1650 MGE--ENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2622)
Q Consensus 1650 ~g~--~~~~~ll~~Ll~~L~~~--~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~ 1725 (2622)
-.+ +.+.++++.+....... .+..+...++.++..+.. ........++.+...+.+.++.+|..++.+++.++.
T Consensus 265 ~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~ 342 (618)
T 1w63_A 265 DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQ 342 (618)
T ss_dssp CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 111 02223333333221111 112344455554443211 111123345666677788899999999999999998
Q ss_pred hhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH
Q 000050 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2622)
Q Consensus 1726 ~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~ 1805 (2622)
..+..|.+|. +.++.++.|++.+||..+++.+..++. ...++.+++++...+.+.+..+|..++..++.+...
T Consensus 343 ~~p~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 343 TDHNAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred hCHHHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 8776666654 456777889999999999888776643 333566777777777777888999999999988643
Q ss_pred hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 000050 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2622)
Q Consensus 1806 ~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ 1885 (2622)
.++ ..+.. +..+...+.+....++..++..+..++...|......++.
T Consensus 416 ~~~----------------~~~~~----------------v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~ 463 (618)
T 1w63_A 416 YAP----------------SKRWH----------------IDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQR 463 (618)
T ss_dssp SCC----------------CHHHH----------------HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHH
T ss_pred hCc----------------cHHHH----------------HHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 211 01111 1112112222223455556777777877777544444555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---------hh-hhHHHHHhhhcC--CCChhhHHhHHHHHHHHHHh
Q 000050 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGER---------VL-PSIIPILSRGLK--DPSASRRQGVCIGLSEVMAS 1953 (2622)
Q Consensus 1886 ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~---------~l-~~llp~L~~~L~--d~~~~vR~~a~~~L~~li~~ 1953 (2622)
+...+.... ........+++++|+....+... +. ..+++.+...++ ..++.+|..++.++..+...
T Consensus 464 L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 464 LYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 544443211 22333446899999998765321 11 223444444443 56889999999999888665
Q ss_pred hChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000050 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1954 ~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l 1992 (2622)
.+. ..+.+...+.....|.|.+||+.|...+.-+
T Consensus 542 ~~~-----~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 542 FTC-----TVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp CSS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred Ccc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 432 1234444555567788999999998866554
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-11 Score=168.24 Aligned_cols=458 Identities=12% Similarity=0.076 Sum_probs=305.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc-----hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-ccch
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSL 1374 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~-----~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg-~~~l 1374 (2622)
.++.++..++++++.+|..++.+|..+....... ....++.+++.|..++++..|..|+.+|..+..... ...+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 5778888888999999999999998876432211 135788888888777678899999999998765321 1112
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000050 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2622)
Q Consensus 1375 ~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2622)
...+.++.+.+.+.+. ++..|..|+.++..++...+.. ...+ ...+|.++..+.++++.+|..+..++..+...-+
T Consensus 98 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTH-HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcch-HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 2336788888999887 7899999999999998764432 2222 3689999999999999999999888887764221
Q ss_pred HH----hHHhhHHHHHhhccCCC-hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000050 1453 AQ----GVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1453 ~~----~v~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2622)
.. .-...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.++.++..++++|..++
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 11 11345777777776544 44555677788888764321111111467899999999999999999999999998
Q ss_pred hhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhc
Q 000050 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2622)
Q Consensus 1528 ~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~ 1607 (2622)
...+... ....++|.+.+.+.+.++++|..++.++++++..
T Consensus 256 ~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~- 296 (529)
T 1jdh_A 256 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 296 (529)
T ss_dssp TTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-
T ss_pred cCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 6432100 0123566677777777888899999999888752
Q ss_pred CCCCcccch-HhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhhhcCChHHHHH
Q 000050 1608 TEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2622)
Q Consensus 1608 ~~~~~l~~~-l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~r~~ 1677 (2622)
.++..... -...++.+.+.+.+ ..+.+|..+..+|+.++...++. .-...+|.+.+.+.++....+|..
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence 11111111 12356777777764 34899999999999997543221 012467888888887665567888
Q ss_pred HHHHHHHHHHHhchh-HH--HhHhHHHHHhccCCChhhHHHH----------------------HHHHHHhhhhhCcchh
Q 000050 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGY----------------------LTLFKYLPRSLGVQFQ 1732 (2622)
Q Consensus 1678 a~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~~~~vR~~a----------------------l~~l~~L~~~~g~~f~ 1732 (2622)
++..++.++..-... .+ ..++|.+++.+.+.++.+|..+ +.++..++... ...
T Consensus 376 a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~--~~~ 453 (529)
T 1jdh_A 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNR 453 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc--hHH
Confidence 888888876522111 11 3567777777766666666543 34444443321 101
Q ss_pred hhH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-hhchh--hhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000050 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY-ATTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1733 p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~-~~~~i--~~llp~l~~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
..+ ...++.+...+.+.+++++..+..++..+...- ....+ ...++.+.+.+.+.+..+|..+...+..+
T Consensus 454 ~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 111 236789999999999999999988887765210 00111 12457777778888888888887776543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-11 Score=164.87 Aligned_cols=466 Identities=12% Similarity=0.075 Sum_probs=289.0
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh-hhhhhhhHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
+|.+++.+.+++..+|..++.+|+.++...+... ....+..++.+++.+.+ +++.+|..|+.+|..++.. ++.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~~-- 93 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REG-- 93 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HHH--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---chh--
Confidence 4444444444444444445555555543222110 00124567788888864 4899999999999998653 110
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccch-
Q 000050 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY- 1616 (2622)
Q Consensus 1538 ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~- 1616 (2622)
+. .+. -...+|.+.+.+.+.++.++..++.++.+++..... .....
T Consensus 94 ----------------~~---~i~------------~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~ 140 (529)
T 1jdh_A 94 ----------------LL---AIF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVR 140 (529)
T ss_dssp ----------------HH---HHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT--HHHHHH
T ss_pred ----------------HH---HHH------------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 00 000 013567777778888889999999999999874211 11111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhc-h
Q 000050 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-T 1691 (2622)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g-~ 1691 (2622)
-...+|.+.+++.++++.+|..+..++..++....+. .-...++.++..+++......+..+...+..+...-. .
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 220 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccH
Confidence 2467899999999999999999999999887521110 1124677788888776655444444555555442111 1
Q ss_pred hHH--HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 000050 1692 VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2622)
Q Consensus 1692 ~~l--~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~ 1769 (2622)
..+ ...++.++..+.+.++.++..++.++..++...+.. .....++|.+.+.+.++++++|..+..++..+.....
T Consensus 221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 111 356888888888889999999999999998765431 2345789999999999999999999999888754311
Q ss_pred h--ch-h-hhhHHHHhhccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHH
Q 000050 1770 T--TS-L-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2622)
Q Consensus 1770 ~--~~-i-~~llp~l~~~l~d--~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~ 1843 (2622)
. .. . ...+|.+.+.+.+ +++.++..++..++.+... +.+ .+.....+.+.
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~--------------~~~---~~~~~~~i~~~------- 354 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQE---AEMAQNAVRLH------- 354 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STT---HHHHHHHHHHT-------
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--------------Cch---HHHHHHHHHHc-------
Confidence 1 00 1 1245555555543 4578999999999887311 001 11111122221
Q ss_pred HHHHHHHHhccCCC-HHHHHHHHHHHHHHHhhChhhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHH--------------
Q 000050 1844 EVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAGR-------------- 1907 (2622)
Q Consensus 1844 ~il~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~p~~l~~~l-~~ll~~L~~~L~s~~~~~R~~A~~-------------- 1907 (2622)
..++.+...+.+.+ +.+|..++.+++.++.+... ...+. ..+++.++..+.+.++++|..|+.
T Consensus 355 ~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~ 433 (529)
T 1jdh_A 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433 (529)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHH
T ss_pred CChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHH
Confidence 12444444555554 68999999999998864332 22222 245677777777666666654444
Q ss_pred --------HHHHHHHHhccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh-HHhHHHHHHHHhc
Q 000050 1908 --------ALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALC 1975 (2622)
Q Consensus 1908 --------~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~-l~~ll~~l~~~L~ 1975 (2622)
+|..++...... .-...+|.+...+.+++++++..++.+++.+... ++..... -...++.+..++.
T Consensus 434 ~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~ 511 (529)
T 1jdh_A 434 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLH 511 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhc
Confidence 333333211000 1235678888889999999999999999987532 1111111 1356788889999
Q ss_pred CCcHHHHHHHHHHHHHH
Q 000050 1976 DSILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1976 d~d~~VR~~A~~al~~l 1992 (2622)
+++++|+..|..++..+
T Consensus 512 ~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 512 SRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988765
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-10 Score=159.27 Aligned_cols=476 Identities=14% Similarity=0.107 Sum_probs=310.9
Q ss_pred ccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000050 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2622)
Q Consensus 1332 ~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~ 1411 (2622)
+.+........++.+. ++++..|+.+...+..++..- ++.. .-+++.+.+-++++ |+..|-.|+.+++.+..
T Consensus 65 G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~-~e~~--~l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~--- 136 (618)
T 1w63_A 65 GYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDER-QDVH--LLMTNCIKNDLNHS-TQFVQGLALCTLGCMGS--- 136 (618)
T ss_dssp TCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCC-HHHH--HHHHHHHHHHHSCS-SSHHHHHHHHHHHHHCC---
T ss_pred CCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCC-cHHH--HHHHHHHHHhcCCC-CHhHHHHHHHHHHhcCC---
Confidence 4333334444555444 667888888888777666432 1111 14667788888887 78999888888877652
Q ss_pred ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCch
Q 000050 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2622)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2622)
......++|.+..++.|+++.||++|..|+..+.... ++.++.+++.+.+.+.+++..++.+|+.+|+.++...|+
T Consensus 137 ---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 137 ---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 2345678899999999999999999999999998754 445677888888889999999999999999999876554
Q ss_pred hhhhhhhhhHHHHhhhhcC---------------CCHHHHHHHHHHHHHHhhhcCChhH-HhHHHHHHhhcC------CC
Q 000050 1492 QLSQCLPKIVPKLTEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLT------DP 1549 (2622)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L~D---------------~~~~VR~aA~~aL~~l~~~~~~~~i-~~ilp~Ll~~l~------d~ 1549 (2622)
. ...+..++|.+++.|.+ +++..+....++|+.++.. +|.. +.+.+.|...+. +.
T Consensus 213 ~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 213 M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccch
Confidence 2 22344556666555442 4788999999999988753 3332 333333333321 11
Q ss_pred ChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHh
Q 000050 1550 NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2622)
Q Consensus 1550 ~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L 1628 (2622)
+..+. +|+..+..... ........++.+.+.+.+.++++|..+...++.++.. .+..+.+| .+.+...+
T Consensus 290 ~~aV~~ea~~~i~~l~~----~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~~~~----~~~i~~~l 359 (618)
T 1w63_A 290 GNAILYETVLTIMDIKS----ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAVQRH----RSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHHGGG----HHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHHHHH----HHHHHHHc
Confidence 12233 56666654211 1222234667777888888889999999999999874 23334444 45666778
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC
Q 000050 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ 1708 (2622)
Q Consensus 1629 ~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~ 1708 (2622)
.|++..+|..|+..+..++. +.....+++.++..+.+.+ ...|..++.+++.++..+... ....++.+++.+.+.
T Consensus 360 ~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d-~e~r~~~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCE-PEFKADCASGIFLAAEKYAPS-KRWHIDTIMRVLTTA 434 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHHHT
T ss_pred cCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHhc
Confidence 89999999999999988865 4457788888888887654 558889999999998876433 355667777777766
Q ss_pred ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCC--CChHHHHHHHHHHHHHHHHhhhc----------hhhhh
Q 000050 1709 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATT----------SLPLL 1776 (2622)
Q Consensus 1709 ~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d--~~~~VR~~al~al~~lv~~~~~~----------~i~~l 1776 (2622)
...++..+...+..+....++. .. .+++.+...+.+ ..+.+...++..++.+....... ....+
T Consensus 435 ~~~v~~~~~~~l~~ii~~~p~l-~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~ 510 (618)
T 1w63_A 435 GSYVRDDAVPNLIQLITNSVEM-HA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEV 510 (618)
T ss_dssp GGGSCSSHHHHHHHHHHHSCST-HH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHH
T ss_pred cchhHHHHHHHHHHHHhcChhH-HH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHH
Confidence 6677777777777777655432 22 234444444442 23444456677776665443210 00123
Q ss_pred HHHHhhccC--CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc
Q 000050 1777 LPAVEDGIF--NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2622)
Q Consensus 1777 lp~l~~~l~--d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~ 1854 (2622)
.+.+...+. .++..+|..++..+..+..+.+ +. . ..+. .+ +-.+..
T Consensus 511 ~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~--------------~~--~----~~l~---------~~---L~~~~~ 558 (618)
T 1w63_A 511 LDILESVLISNMSTSVTRGYALTAIMKLSTRFT--------------CT--V----NRIK---------KV---VSIYGS 558 (618)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS--------------SC--H----HHHH---------HH---HHHHTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc--------------ch--H----HHHH---------HH---HHHhcC
Confidence 333333221 4567788888888877753321 00 0 1111 11 222357
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 000050 1855 DVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~ 1873 (2622)
|.+.+||+.|...|.-+..
T Consensus 559 ~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 559 SIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 8899999999999987664
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-11 Score=157.75 Aligned_cols=393 Identities=15% Similarity=0.157 Sum_probs=269.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
++.++..+...++.++-.|..+++.+.+.-.. +.+ ..++|.|++.|.. ++...+..|+.+|+.++.+.+++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56677788888899999998898888653221 122 4579999999975 45788999999999999877665433
Q ss_pred hh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH------HhHHHHHHhhcCCCChhHHHHHHHHHhcccccc
Q 000050 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2622)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2622)
.. ...+|.|+.+|.++++.||+.|+++|+.++... ++. ...++.|...+..++..
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~---------------- 200 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLS---------------- 200 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGG----------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccch----------------
Confidence 32 357899999999999999999999999998542 221 22344444444433211
Q ss_pred CChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000050 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1569 ~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~ 1648 (2622)
.......+.+...+.+++..- .+..-......++|.|..++.+++++++..++.+|+.++.
T Consensus 201 ------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 201 ------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp ------------------GSCHHHHHHHHHHHHHHHCCC-SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred ------------------hhhHHHHHHHHHHHHHHhhcc-cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 112345666778888887642 2222223456789999999999999999999999999876
Q ss_pred hhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH---H-HhHhHHHHHhccCCChhhHHHHHHHH
Q 000050 1649 GMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F-EHILPDIIRNCSHQRASVRDGYLTLF 1720 (2622)
Q Consensus 1649 ~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~---l-~~llp~l~~~l~~~~~~vR~~al~~l 1720 (2622)
...+. ....++|.|.+.+.+.. ..++..++.+++.++....... . ...++.+...+.++++.+|..++.++
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 32211 12457888888887654 5577788888888764322111 1 34566777778889999999999999
Q ss_pred HHhhhhhCcchhhhH-HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhh-----hhHHHHhhccCCCchHHHHH
Q 000050 1721 KYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIRQS 1794 (2622)
Q Consensus 1721 ~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~-----~llp~l~~~l~d~~~rvR~~ 1794 (2622)
+.++........... ..++|.++..+.+.+..+|..|..++..+......+.+. ..+|.|.+.+.+.+.+++..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 999865433222222 248899999999999999999999998877654333221 26788888888999999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Q 000050 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2622)
+++.+..++...... . ..+.. ..+++..| .+..+.....+.+..|++.|..++..++.
T Consensus 421 ~L~aL~nil~~~~~~---------~-----~~~~~-~~~iee~g------gl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 421 ILDAISNIFQAAEKL---------G-----ETEKL-SIMIEECG------GLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHTT---------T-----CHHHH-HHHHHHTT------HHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhHhc---------c-----chHHH-HHHHHHcC------cHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 999999887542110 0 01111 12233332 12223333567788999999999877654
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.1e-10 Score=151.78 Aligned_cols=525 Identities=13% Similarity=0.072 Sum_probs=315.9
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhH
Q 000050 1887 MNTLISSLAS---SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2622)
Q Consensus 1887 l~~L~~~L~s---~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l 1963 (2622)
+..+-+.+.+ .+...|..+..-+-.+ ...|.++. ...+.+.+.+.+++...|..+..++..+.... + +..
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d~s-~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~----e~~ 109 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHDID-FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-S----ELI 109 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCCCC-SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-H----HHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCCCc-hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-c----HHH
Confidence 3344444442 2444444444333222 22465543 34455555778889999988887777654321 1 233
Q ss_pred HhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhh
Q 000050 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043 (2622)
Q Consensus 1964 ~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~ 2043 (2622)
--+++.+.+-+.|+++.+|..|..+++.+.. + +
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~----e---------------------------------------- 142 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGS---R----E---------------------------------------- 142 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---H----H----------------------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---H----H----------------------------------------
Confidence 4567778888889999999888888776521 1 0
Q ss_pred hhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhc--CCCCHHHHHHHHHHHHHhhhccChhcHH--HHHHHHHh
Q 000050 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVE--SLVSELLK 2119 (2622)
Q Consensus 2044 L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l--~~~~~~vr~~a~~al~~l~~~~~~~~l~--~ll~~Ll~ 2119 (2622)
..+.++|.+.+.+ .+.++.||..|+-|+..+.... ++.++ .+++.+.+
T Consensus 143 ---------------------------~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~ 194 (621)
T 2vgl_A 143 ---------------------------MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVH 194 (621)
T ss_dssp ---------------------------HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHH
Confidence 1233455566667 7888999999999999888743 33333 67788888
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCC-------------ChhHHHHHHHHHHHHHhhcCc
Q 000050 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS-------------DSTTVAAAWEALSRVVASVPK 2186 (2622)
Q Consensus 2120 ~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~-------------d~~V~~~a~~aL~~l~~~~~~ 2186 (2622)
.+.|.++.++.+|+.++..++...+..+.++.+.+++.|..++.+. ++=.+-.....+..+......
T Consensus 195 lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~ 274 (621)
T 2vgl_A 195 LLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDP 274 (621)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSH
T ss_pred HhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCH
Confidence 8899999999999999999998776667777777777776665432 233333333333332211000
Q ss_pred cchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCC--HHHHHHHHHHHHHHHhhcChhh
Q 000050 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS--AELREQAALGLGELIEVTSEQS 2264 (2622)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~--~~~r~~aa~~L~~l~~~~~~~~ 2264 (2622)
+....+.+.+.+.+....+ . |+.- .+.+.+ ..+...++.++..+ .+
T Consensus 275 ~~~~~l~~~L~~il~~~~~------------~-----~ks~---------~l~~~n~~~aVl~ea~~~i~~l---~~--- 322 (621)
T 2vgl_A 275 AVRGRLTECLETILNKAQE------------P-----PKSK---------KVQHSNAKNAVLFEAISLIIHH---DS--- 322 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHS------------C-----CSCS---------SHHHHHHHHHHHHHHHHHHHHH---CC---
T ss_pred HHHHHHHHHHHHHHHhhcc------------C-----cccc---------cccccchHHHHHHHHHHHHHhc---CC---
Confidence 1111111111111111000 0 0000 001111 13333444444433 22
Q ss_pred hhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhc
Q 000050 2265 LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLSAL 2343 (2622)
Q Consensus 2265 l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~-d~~~~vR~~Aa~aLg~L~~~ 2343 (2622)
..++......+|.+.+.+. +.++|..++.+|..++...+. .+++......++.++. |++..+|..|...|..++.
T Consensus 323 ~~~~~~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~- 398 (621)
T 2vgl_A 323 EPNLLVRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD- 398 (621)
T ss_dssp CHHHHHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-
Confidence 2234455667777887654 789999999999999765431 1234455678889999 9999999999999988864
Q ss_pred ccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000050 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423 (2622)
Q Consensus 2344 ~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2622)
..+++.++.+|...+.+.|.+.|..++.+++.+..+..... .-+.+.++.++... .+.+...+...+..+....|
T Consensus 399 ~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~~~v~~Ll~ll~~~----~~~v~~ev~~~l~~ii~~~~ 473 (621)
T 2vgl_A 399 RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-TWYVDTILNLIRIA----GDYVSEEVWYRVIQIVINRD 473 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHH----GGGSCSHHHHHHHHHHGGGC
T ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHhh----cccchHHHHHHHHHHHhCCh
Confidence 34688999999999988899999999999999988776544 44555555554332 21222333444555555555
Q ss_pred chHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChh--HHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000050 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL--FLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2622)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~--~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2622)
+-. ...+..+...+.++.. +...+.....++.+.++.+...+. ..+++..+.+......+.+|..++.|+.++..
T Consensus 474 ~~~-~~~~~~l~~~l~~~~~--~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 474 DVQ-GYAAKTVFEALQAPAC--HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp SCH-HHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHcCccc--hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 322 1223333333333332 222332333555555544432211 13566777777888899999999999999876
Q ss_pred hhhhcCCCCchhhHhHHHHHHh-hcC--CCCHHHHHHHHHHHHHHHh
Q 000050 2502 HQIQSGPANTTVVVDILASVVS-ALH--DDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2502 ~~~~~~~~~~~~l~~~l~~l~~-~l~--d~s~dvr~~a~~~l~~~a~ 2545 (2622)
... ...+.+..++. ... |.+.|||+.|..-.+-+..
T Consensus 551 ~~p--------~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 551 LFP--------EVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HCG--------GGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred HCh--------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence 542 12344444443 334 8999999999998887754
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=155.14 Aligned_cols=394 Identities=15% Similarity=0.162 Sum_probs=270.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
.++.++..+..+++.++..|..+++.+.+.-.. +.+ ..++|.+++.|.. ++...+..|+.+|..++.+.+.+..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456777788888888988888888877643221 122 5689999999964 5578999999999999987766533
Q ss_pred hh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH------HhHHHHHHhhcCCCChhHHHHHHHHHhccccc
Q 000050 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2622)
Q Consensus 1495 ~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2622)
.. -...+|.|+.++.++++.||..|+++|+.++..- ++. ...++.|+..+.+++..
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~~g~i~~Ll~lL~~~~~~--------------- 219 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIKHGAIDPLLALLAVPDLS--------------- 219 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHTTCSSCGG---------------
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHcCCcHHHHHHHhccchh---------------
Confidence 22 2468899999999999999999999999998532 222 22345555554433211
Q ss_pred cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
.......+.++..+.+++..- .+..-......++|.|..++.+++++++..++.+|+.++
T Consensus 220 -------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 220 -------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 279 (529)
T ss_dssp -------------------GSCHHHHHHHHHHHHHHHCCC-TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred -------------------HhHHHHHHHHHHHHHHHHhcc-cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 012345666777888887642 222222345678999999999999999999999999988
Q ss_pred hhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh--H-H-HhHhHHHHHhccCCChhhHHHHHHH
Q 000050 1648 RGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTL 1719 (2622)
Q Consensus 1648 ~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~al~~ 1719 (2622)
....+. ....++|.|+..+.+.+ ..++..++.+++.++.+.... . . ...++.+...+.++++.+|..++.+
T Consensus 280 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 280 DGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 358 (529)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred hhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHH
Confidence 643211 12467888888887654 557778888888876432211 1 1 3567888888999999999999999
Q ss_pred HHHhhhhhCcchhhhH-HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhh-----hhHHHHhhccCCCchHHHH
Q 000050 1720 FKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIRQ 1793 (2622)
Q Consensus 1720 l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~-----~llp~l~~~l~d~~~rvR~ 1793 (2622)
++.++........... ..++|.++..+.+.+..+|..|..++..+......+.+. ..+|.|.+.+...+.+++.
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9999864433222222 248899999999999999999999998887654333221 2678888889999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Q 000050 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1794 ~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2622)
.+++.+..++...... . ..+.... +++..|. +..+.....+.+..|++.|..++..++.
T Consensus 439 ~~L~aL~nil~~~~~~-------------~-~~~~~~~-~iee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 439 VILDAISNIFQAAEKL-------------G-ETEKLSI-MIEECGG------LDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHHHHHHTT-------------T-CHHHHHH-HHHHTTC------HHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhHhc-------------c-ChHHHHH-HHHHCCc------HHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999887542110 0 0111212 2222221 2222233467789999999999877654
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-10 Score=153.85 Aligned_cols=479 Identities=13% Similarity=0.104 Sum_probs=302.0
Q ss_pred HHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
++.+....+.+++.+.+++...|+.+...+..++...++.+ --++..+.+-++|+++.+|..|.++|+.+..
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---- 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVGS---- 140 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----
Confidence 44556778888899999999999988888888887666543 3456677788899999999999999999853
Q ss_pred hh-HHhHHHHHHhhc--CCCChhHH-HHHHHHHhccccccCChhhhh--hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1533 PE-IASLVPTLLMGL--TDPNDHTK-YSLDILLQTTFVNTVDAPSLA--LLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1533 ~~-i~~ilp~Ll~~l--~d~~~~~r-~al~~L~~~~~~~~~~~~~l~--~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
++ .+.++|.+.+.+ .|++..+| .|+-++... .. ..+.... .+++.+.+.+.|+++.++..|...+..++..
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl--~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRL--YR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHH--HH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--HH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 44 478889999999 89999998 344433321 11 1122222 5788889999999999999999999998874
Q ss_pred cCCCCcccchHhhhHHHHHHHhcCC-------------CHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcC
Q 000050 1607 VTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2622)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d~-------------~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~ 1670 (2622)
+++.+.++.+.++..+.+++.+. +|-.+....+.++.+...-.++ .+.++++.++..+.+..
T Consensus 218 --~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 218 --NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp --CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred --ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 34456677777777777776432 4667777777776654311111 12233444443322111
Q ss_pred ----------ChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1671 ----------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1671 ----------~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
...+..+++.++-.+. ...+.....+..+...+.+.++++|-.++..+..++...+. .+++....+
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~ 371 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIE 371 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHH
Confidence 0012222222222211 11233455666777777888999999999999999876542 124455566
Q ss_pred HHHhhcC-CCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q 000050 1741 AILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2622)
Q Consensus 1741 ~ll~~L~-d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~ 1819 (2622)
.++.++. |++.+||..+++.+..++ .++.++.++.++.+.+.+.+...|..++..++.+....+..
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~---------- 438 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD---------- 438 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----------
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------
Confidence 7777888 999999998888776654 33456677788877777777778888888888876543211
Q ss_pred CCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCC-
Q 000050 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS- 1898 (2622)
Q Consensus 1820 dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~- 1898 (2622)
.+.....+.+.+. +....+...+...+..++...|.. +.+ .+..++..+.++.
T Consensus 439 ------~~~~v~~Ll~ll~----------------~~~~~v~~ev~~~l~~ii~~~~~~-~~~---~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 439 ------YTWYVDTILNLIR----------------IAGDYVSEEVWYRVIQIVINRDDV-QGY---AAKTVFEALQAPAC 492 (621)
T ss_dssp ------THHHHHHHHHHHH----------------HHGGGSCSHHHHHHHHHHGGGCSC-HHH---HHHHHHHHHTSSSC
T ss_pred ------HHHHHHHHHHHHH----------------hhcccchHHHHHHHHHHHhCChhH-HHH---HHHHHHHHHcCccc
Confidence 0111112222211 111113333444555555554432 221 2334455566543
Q ss_pred -HHHHHHHHHHHHHHHHHhccc--hhh-hHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHh
Q 000050 1899 -SERRQVAGRALGELVRKLGER--VLP-SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2622)
Q Consensus 1899 -~~~R~~A~~~L~~lv~~~~~~--~l~-~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2622)
...-..+++++|+........ ..| .++..+...+.+.++.+|..++.++..+....+ + . .+.+...+..+.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~---~~~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-V---KATIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-G---HHHHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-H---HHHHHHHHHHHh
Confidence 234445668999887765432 222 556667666778889999999999888765432 2 1 133333444445
Q ss_pred c--CCcHHHHHHHHHHHHHH
Q 000050 1975 C--DSILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1975 ~--d~d~~VR~~A~~al~~l 1992 (2622)
. |.|.+||+.|...+.-+
T Consensus 568 ~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHSCSSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 5 88999999998765443
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-10 Score=154.31 Aligned_cols=383 Identities=14% Similarity=0.135 Sum_probs=254.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---ccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000050 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2622)
Q Consensus 1340 ~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~ 1416 (2622)
+.+++.+ .++|...+..|...+..+...-. ...+...+++|.|.+++.+..++..+..|..++..++.+-...-..
T Consensus 60 ~~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3344444 34455666777777766654221 2223334788999999987667889999999999998654332222
Q ss_pred HHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h-H-HhhHHHHHhhccCCCh-----hhHHHHHHHHHHHH
Q 000050 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2622)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~-v-~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~la 1486 (2622)
.+. ..+|.++.++.++++.||+.|..++..++..-+.. . . ...++.++..+...+. ...+.++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 222 47999999999999999999999999997643322 1 1 4568888888876543 34567788888888
Q ss_pred hhC-chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccc
Q 000050 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2622)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2622)
... +.........++|.|.+++.+.+++|+..|+++|..++..-. +.. ..+.
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~--~~~---------------------~~i~---- 271 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMVV---- 271 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHH---------------------HHHH----
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh--hhH---------------------HHHH----
Confidence 653 222223346788999999999999999999999999975321 100 0000
Q ss_pred cccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc--hHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~--~l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
-..++|.|...+.+.+..++..++.++++++.. +. .... .-...++.|..++.++++.+|..|+.+|
T Consensus 272 --------~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~-~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 272 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CH-HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred --------hcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CH-HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 012456667777777888999999999988753 21 1111 1123566777788899999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHH
Q 000050 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2622)
Q Consensus 1644 ~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~ 1714 (2622)
+.++....+. .-..++|.++..+.+.+ ..+|..++.+|+.++.....+.. ...++.+++.+.++++.++.
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 9997632211 12357888888887664 56888999999998876544432 35688899999999999999
Q ss_pred HHHHHHHHhhhhhC---c--chhhhHHh--HHHHHHhhcCCCChHHHHHHHHHHH
Q 000050 1715 GYLTLFKYLPRSLG---V--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGH 1762 (2622)
Q Consensus 1715 ~al~~l~~L~~~~g---~--~f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~ 1762 (2622)
.++.++..+..... . .+..++.. .+..+-....+++++|++.|...+.
T Consensus 420 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999888765432 1 11111211 2334444444556666655544443
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=147.21 Aligned_cols=203 Identities=15% Similarity=0.205 Sum_probs=168.6
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhc
Q 000050 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2622)
Q Consensus 1774 ~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~ 1853 (2622)
..+-|.+.+.+.+.+|+.|.+++..+..++...++.. ... +.+++..+...+
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~----------~~~------------------~~~i~~~L~~~l 65 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE----------NGE------------------YGALVSALKKVI 65 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC----------CCC------------------CHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCC----------CCC------------------HHHHHHHHHHHh
Confidence 3455567788899999999999999999886532210 000 123444444556
Q ss_pred c-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc
Q 000050 1854 S-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2622)
Q Consensus 1854 ~-D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L 1932 (2622)
. |.+..||..|+.+++.++...+..+.+|++.+++.++..+.+++..+|..+..++..++...+ .+.++|.+...+
T Consensus 66 ~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l 142 (242)
T 2qk2_A 66 TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESL 142 (242)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 4 999999999999999999988888999999999999999999999999999999999987643 567889999999
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChh-hHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHH
Q 000050 1933 KDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2622)
Q Consensus 1933 ~d~~~~vR~~a~~~L~~li~~~~~~-~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2622)
+++++.+|..++.+|+.++..++++ ...++++.++|.+..++.|++++||..|..+++.+....|...+.++++.
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 9999999999999999988877654 35778999999999999999999999999999999999998666665543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-10 Score=151.24 Aligned_cols=383 Identities=14% Similarity=0.134 Sum_probs=254.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---ccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000050 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2622)
Q Consensus 1340 ~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~ 1416 (2622)
+.+++.+. +++...+..|...+..+...-. ...+...+++|.|.+++....++..+..|+.++..++.+.......
T Consensus 79 ~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444433 3445666666666665553221 1222234788999999976667889999999999998654322222
Q ss_pred HHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h-H-HhhHHHHHhhccCCCh-----hhHHHHHHHHHHHH
Q 000050 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2622)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~-v-~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~la 1486 (2622)
.+. ..+|.++.++.++++.||+.|..++..++..-+.. . + ...+|.++..+...+. ...+.++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 222 57999999999999999999999999987643222 1 1 4568888888876543 34567788888887
Q ss_pred hhC-chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccc
Q 000050 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2622)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2622)
... +.........++|.|..++.+.+++|+..|+++|..++..-. +.. ..+.
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~---------------------~~v~---- 290 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMVV---- 290 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHH---------------------HHHH----
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhH---------------------HHHH----
Confidence 653 222223346788999999999999999999999999985321 100 0000
Q ss_pred cccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc--hHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~--~l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
-..++|.|...+.+.++.++..++.++++++.. +. .... .-...++.|..++.++++.+|..|+.+|
T Consensus 291 --------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~-~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 291 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CH-HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred --------hccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--ch-HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 012456667777778888999999999998752 21 1111 1234677888899999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHH
Q 000050 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2622)
Q Consensus 1644 ~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~ 1714 (2622)
+.++...... .-..++|.++..+.+.. ..+|..++.+|+.++.....+.. ...++.+++.+.+.++.++.
T Consensus 360 ~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 360 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9998632211 12357888888887664 55888899999998876544432 34688999999999999999
Q ss_pred HHHHHHHHhhhhhCc--chhhh---HHh--HHHHHHhhcCCCChHHHHHHHHHHH
Q 000050 1715 GYLTLFKYLPRSLGV--QFQNY---LQQ--VLPAILDGLADENESVRDAALGAGH 1762 (2622)
Q Consensus 1715 ~al~~l~~L~~~~g~--~f~p~---l~~--ii~~ll~~L~d~~~~VR~~al~al~ 1762 (2622)
.++.++..+...... ...+| +.. .+..+-....+++++|++.|...+.
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999988887654321 11111 111 2334444444556666655544443
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-11 Score=144.26 Aligned_cols=200 Identities=10% Similarity=0.196 Sum_probs=163.1
Q ss_pred HHHhhccCCChhhHHHHHHHHHH-HHhhCchhh--hhhhhhhHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhcC-C----
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK-N---- 1532 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~-la~~~p~~l--~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~-~---- 1532 (2622)
.+.+.+.+++|..|+.+++.|.. +++++++.. ...+..++..+.+.+ +|+|..||..|+++|+.+++.++ .
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34567789999999999999999 987777655 455678899999999 89999999999999999999886 2
Q ss_pred hhHHhHHHHHHhhcCCCChhHHH----HHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcC
Q 000050 1533 PEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2622)
Q Consensus 1533 ~~i~~ilp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2622)
++...++|.++..+.|....+++ |++.+... .......+++..+++.+...+++.+|.+|..++.+++.++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 56678999999999998887763 44444431 11111112377899999999999999999999999999998654
Q ss_pred CC-CcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHH
Q 000050 1609 EP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2622)
Q Consensus 1609 ~~-~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~L 1662 (2622)
.. ..+.+|+ +.++|.+.+.+.|.++.||..|..+++.++..+|++.+..+++.|
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 32 4577899 999999999999999999999999999999999987666666544
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-06 Score=124.68 Aligned_cols=384 Identities=11% Similarity=0.121 Sum_probs=227.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHhcc--chhhhHHH
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSS-----SERRQVAGRALGELVRKLGE--RVLPSIIP 1926 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~-~l~~~l~~ll~~L~~~L~s~~-----~~~R~~A~~~L~~lv~~~~~--~~l~~llp 1926 (2622)
..+|..+++++=++++++..... .-++++|.+++.++.....+. ..++...+.++|+..+.+.. ..++.++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 45799999999999999765543 345889999999988775431 22344444577776665543 36778888
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHHhhChhh-------HHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-------LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~-------l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
.+.+++.++++.++..||.++..+...++..- ..+|+..++..+.....+-.++-...-.++++.+....+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 88888999999999999999999988876542 24578888888877777767776666777888888777653
Q ss_pred h-hhhhHHHHHHhcccCCchhHHHHHHHHHHhhh--ccccccc--hhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhh
Q 000050 2000 A-IDEIVPTLLHALEDDQTSDTALDGLKQILSVR--TTAVLPH--ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGT 2074 (2622)
Q Consensus 2000 ~-~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~--~~~ilp~--Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~ 2074 (2622)
. ...++..|+..+ ...+.+++... ...++.. .+..+. .-.+...+++...|..+.+++..
T Consensus 650 ~~~~~~i~~Lm~~~---------~~~w~~l~~~~~~~~~~~~d~~~i~~l~------~il~~n~~v~~~~g~~f~~~~~~ 714 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLP---------NQVWDSIIQQATKNVDILKDPETVKQLG------SILKTNVRACKAVGHPFVIQLGR 714 (1073)
T ss_dssp HHHHHHHHHHTHHH---------HHHHHHHHHHHHHCGGGGGCHHHHHHHH------HHHHHHHHHHHHHCGGGHHHHHH
T ss_pred chHHHHHHHHHHHH---------HHHHHHHHHHhhcCchhccChHHHHHHH------HHHhhhHHHHhhcchhHHHHHHH
Confidence 3 233333322211 11222222110 0000000 000000 11234556667789999999998
Q ss_pred hHHHHHHhcCC-----------------CCHH------HHHHHHHHHHHhhhccCh------hcHHHHHHHHHhhcCCCC
Q 000050 2075 ILPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVIDE------EGVESLVSELLKGVGDNQ 2125 (2622)
Q Consensus 2075 il~~Ll~~l~~-----------------~~~~------vr~~a~~al~~l~~~~~~------~~l~~ll~~Ll~~l~d~~ 2125 (2622)
+.+.+++..+. ..+. +|...+..+...+...++ .-+++++..++.-.....
T Consensus 715 i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~ 794 (1073)
T 3gjx_A 715 IYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNV 794 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 88877754211 1122 333444444444433321 113444544444444444
Q ss_pred hhHHH-HHHHHHHHHHhhccccccccHHHHHHHHHH----Hhc---CCChhHHHHHHHHHHHHHhhcCccchhhHHHHHH
Q 000050 2126 ASIRR-SSAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLS---DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197 (2622)
Q Consensus 2126 ~~vR~-~A~~~L~~l~~~~~~~l~~~~~~il~~L~~----~l~---d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~ 2197 (2622)
|..|- ..+.++..++...+..+.+.++.++..++. +++ +..++.|..-..-+.++..++....+
T Consensus 795 p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~-------- 866 (1073)
T 3gjx_A 795 PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFL-------- 866 (1073)
T ss_dssp GGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTT--------
T ss_pred cccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHH--------
Confidence 44454 455666677777777788888888887765 344 34567777777777776665433211
Q ss_pred HHHhhchhhhhhhhcCCccccccCCCC-cCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCh------hhhhhhhh
Q 000050 2198 DAISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE------QSLKEFVI 2270 (2622)
Q Consensus 2198 ~~l~~~~~~~~~~~~~~~~~l~g~~~~-~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~------~~l~p~v~ 2270 (2622)
.+| .....++..++-++.+...++-+.+...+-.+...... .-++.|.-
T Consensus 867 ------------------------~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~ 922 (1073)
T 3gjx_A 867 ------------------------AIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFC 922 (1073)
T ss_dssp ------------------------TSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 111 12344556666667677777767777776666654221 22445555
Q ss_pred hhhHHHHHhhcCCCC
Q 000050 2271 PITGPLIRIIGDRFP 2285 (2622)
Q Consensus 2271 ~i~~~Li~~l~~~~~ 2285 (2622)
.+..-++.++.|..+
T Consensus 923 ~~~~~i~~v~td~~h 937 (1073)
T 3gjx_A 923 DILQHIFSVVTDTSH 937 (1073)
T ss_dssp HHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhCchH
Confidence 555556666766543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-09 Score=132.81 Aligned_cols=244 Identities=17% Similarity=0.121 Sum_probs=162.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhh
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2622)
++.+.+.+.++ ++.+|..|+.+++.+. + ...++.++..+.|+++.||..|..++..+.. .+..+..+
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~---~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~l 91 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRG---G-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDNV 91 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHC---C-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccC---C-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchHH
Confidence 45566677766 7888888888777653 1 3567778888888889999888888876632 12234445
Q ss_pred HHHHHh-hccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhH
Q 000050 1460 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2622)
Q Consensus 1460 lp~Ll~-~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~i 1538 (2622)
++.+.+ .+.++++.+|..++.+|+.+....+. ..+.+++.+...++|+++.||..|+.+|+.++. ...
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~ 160 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KAT 160 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHH
Confidence 555543 35677888888888888888754432 234667788888888888999888888887764 235
Q ss_pred HHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH
Q 000050 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2622)
Q Consensus 1539 lp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2622)
+|.|...+.|++..+| .++..+.... . .-..++|.+...+.|.++.+|..++..++.+..
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~---~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------ 221 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININK---Y----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------ 221 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHT---C----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhc---c----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------
Confidence 6777777788877777 3555554311 0 012456777777777788888888888777641
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHH
Q 000050 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675 (2622)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r 1675 (2622)
+..++.+...+.|++ ||..++.+++.+.. +..+|.|.+.+.++.....+
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSCCHHH
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCCcHHH
Confidence 135666666776643 77777777777532 35677777777654433333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.13 E-value=3.4e-06 Score=114.55 Aligned_cols=306 Identities=15% Similarity=0.101 Sum_probs=185.8
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCC--------hhHHHHHHHHHHHHHhhcc
Q 000050 2076 LPALLSAMG---DDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ--------ASIRRSSAYLIGYFYKNSK 2144 (2622)
Q Consensus 2076 l~~Ll~~l~---~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~--------~~vR~~A~~~L~~l~~~~~ 2144 (2622)
+..|-+++. ..++.+|..++-+++.+......+ .+..|...+.+.+ +.+|..|+..||..+-.++
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 444444443 345666666666666654433322 2333333333222 4566666666666543332
Q ss_pred ccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCC
Q 000050 2145 LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224 (2622)
Q Consensus 2145 ~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~ 2224 (2622)
-++++..|...+.|++..++..|..+|+-+.-...
T Consensus 470 ------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg--------------------------------------- 504 (963)
T 4ady_A 470 ------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG--------------------------------------- 504 (963)
T ss_dssp ------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred ------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC---------------------------------------
Confidence 13455555665555555555555555554422111
Q ss_pred cCchhhHHHHHHHH-ccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhc
Q 000050 2225 KALQPLLPIFLQGL-ISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303 (2622)
Q Consensus 2225 ~~l~~ilp~ll~~L-~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~ 2303 (2622)
-..++..+++.+ .+.+..+|..++.+||-+.-... + ....+++.+....++-+|..+..+++.-....
T Consensus 505 --n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~-e--------~~~~li~~L~~~~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 505 --KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ-E--------LADDLITKMLASDESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp --CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG-G--------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS
T ss_pred --CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh-H--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC
Confidence 111222222222 23467889999999998864332 1 23445666665568889999988888554443
Q ss_pred CCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhh-hcCCHhHHHHHHHHHHHHHhhcCC
Q 000050 2304 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL-QVSDAGIREAILTALKGVLKHAGK 2382 (2622)
Q Consensus 2304 ~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l-~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2622)
|. ...++..+-.+..|++..||..|+.+||.+..-.+ ..++.++..+ ++.++.+|..+..||+.+....|.
T Consensus 574 Gn-----~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 574 GN-----NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp CC-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC
T ss_pred CC-----HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc
Confidence 33 12334444456678899999999999998744233 3577777765 557899999999999887643222
Q ss_pred CCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---HHHHHHHHHHhhcCC--CCchhhHhHHHHHHHH
Q 000050 2383 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELLNLASS--PSWAARHGSVLVFATF 2456 (2622)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll~~~~~--~~~~~r~~~~~~L~~~ 2456 (2622)
..+++.|.....|+++.||..|+..||.+..-..+. .+..+++.+.....+ .+...+.++..+.+-+
T Consensus 646 -------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 646 -------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp -------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 456777888889999999999999999998766655 577777776654432 3444555555555443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-09 Score=132.11 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=185.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
.++.++..+.|+++.||..|..++..+. -...+|.+++.+.++++.+|..++.+|+.+.... ...+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccchHH
Confidence 4677888999999999999999988773 2457888899999999999999999998875321 123455
Q ss_pred HHHHh-hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000050 1501 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1501 vp~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
++.+. .+++|+++.||..|+++|+.++...+ ......++.|...+.|++..+| .++..+.... . ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------~---~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------D---KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC------C---HHHH
Confidence 66665 35789999999999999999985432 2235678999999999999888 5666665321 1 2357
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~l 1658 (2622)
|.|...+.|.++.+|..++..++.+... -+..++.+...+.|+++.||..|+.+|+.+. -+..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYD----------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccC----------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhh
Confidence 8888889999999999999999887421 1357788889999999999999999998864 2467
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccC-CChhhHHHHHHH
Q 000050 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTL 1719 (2622)
Q Consensus 1659 l~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-~~~~vR~~al~~ 1719 (2622)
+|.|...+.+++ +|..++.+++.+ |. +..+|.+.+.+.+ .++.++..++..
T Consensus 225 ~~~L~~~l~d~~---vr~~a~~aL~~i----~~---~~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 225 LSVLCDELKKNT---VYDDIIEAAGEL----GD---KTLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHH----CC---GGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCcc---HHHHHHHHHHhc----Cc---hhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 788888876543 677777777765 33 3566777776654 455555444443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-09 Score=149.21 Aligned_cols=285 Identities=16% Similarity=0.273 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHHHhchhH-H-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc--chhhhHHhHHHHHHhhcCCC
Q 000050 1674 ERSGAAQGLSEVLAALGTVY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADE 1749 (2622)
Q Consensus 1674 ~r~~a~~~L~~i~~~~g~~~-l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~--~f~p~l~~ii~~ll~~L~d~ 1749 (2622)
.+..++..++.++..-+... . ..++..+.+.+.+.... ++++.++..++...+. .++||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 45666777777665332211 1 24566667776665444 9999999999988764 78999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCC-chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHH
Q 000050 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2622)
Q Consensus 1750 ~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~-~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~ 1828 (2622)
...||.+|..+...++..+++.++..++|.+...+.+. .|+.+.+++.+++.+....+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--------------------- 166 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--------------------- 166 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---------------------
Confidence 99999999999999999999999999999999999655 69999999999999874321
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000050 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2622)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p-~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~ 1907 (2622)
..+. ..+.++++.+..+..|+..+|..+|..++..++.... .++.+++|. +++++.+++.. -.
T Consensus 167 --~~~~-----~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~----~~~~~~~p~~~-----~~ 230 (986)
T 2iw3_A 167 --DQVA-----LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPS----LIQCIADPTEV-----PE 230 (986)
T ss_dssp --HHHH-----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHH----HHHHHHCTTHH-----HH
T ss_pred --HHHH-----HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHH----HHHHhcChhhh-----HH
Confidence 1111 1345788888889999999999999999999887433 445555555 55666777541 12
Q ss_pred HHHHHH-----HHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC-hhhHHHhHHhHHHHHHHHhc-CCcHH
Q 000050 1908 ALGELV-----RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALC-DSILE 1980 (2622)
Q Consensus 1908 ~L~~lv-----~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~-~~~l~~~l~~ll~~l~~~L~-d~d~~ 1980 (2622)
|+..+. ..+....+.-+.|.|.++|+++...+++.++..+.++.+-.. +....+|++.++|.+.+... -.+|+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 222221 112233577899999999999998888888888888776553 56778999999999998764 45999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000050 1981 VRESAGLAFSTLFKSAG 1997 (2622)
Q Consensus 1981 VR~~A~~al~~l~~~~g 1997 (2622)
+|+.|.+|+..+.+..+
T Consensus 311 ~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999977644
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-07 Score=139.67 Aligned_cols=534 Identities=13% Similarity=0.110 Sum_probs=292.5
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcCC
Q 000050 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~ 1126 (2622)
+++.++|..+++| |+++|++|++.|++.... |........+. ...+.+..+|.+|. ..|.....
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 3588889999998 778899999999876311 11111111111 12344566666654 35755332
Q ss_pred CCCCCh-HhHHHHhcC-------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHH
Q 000050 1127 DFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2622)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~-------~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2622)
+.++.+ ..++..+.+ +...+|++.+++++.++. .||+.|++++..+.+.... +...+.++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~~ 153 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTELV 153 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHHH
Confidence 222224 566766542 468999999999999874 6888888888888765421 12457788
Q ss_pred HHHHHHhhhhh-CCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCC----------
Q 000050 1198 ALALHSAADVL-RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK---------- 1266 (2622)
Q Consensus 1198 ~~al~~~~~~~-~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~---------- 1266 (2622)
..+|..+++.+ ..++ ... .|..-+. ..+. +..+.+++.+...+...
T Consensus 154 L~iL~~L~Eev~~~~~---------------~~~-~r~~~l~---~~l~----~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQT---------------LPP-QRRRDIQ---QTLT----QNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp HHHHHHHHHHHHTSCC---------------SCH-HHHHHHH---HHHH----HTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccccc---------------hHH-HHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888887632 2111 111 1111111 0011 11333333333333210
Q ss_pred CCC---hhhhhhhhhHHHHHHHHHhhhhccCCcc-h----HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc--c--
Q 000050 1267 ASD---EEKYDLVREGVVIFTGALAKHLAKDDPK-V----HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E-- 1334 (2622)
Q Consensus 1267 ~~~---~~~~~~vr~~~~~~~~~la~~l~~~~~~-v----~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~--~-- 1334 (2622)
..+ .+....++..+.. .+..++.-.+.. + ..+++.+...+.+ +++|.+|.+||..++..... .
T Consensus 211 ~~~~~~~~~~~~l~~~aL~---~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~ 285 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALN---TLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRK 285 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHH---HHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHG
T ss_pred ccchhhhhhhHHHHHHHHH---HHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHH
Confidence 000 0112223333333 333333221110 0 1356666666654 57899999999988864321 1
Q ss_pred -h-----HHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHHhhh-----------CccchhhhcHHHHHHHHHhCC
Q 000050 1335 -A-----PTLVSRLLDQLMK-------SDKYGERRGAAFGLAGVVKGF-----------GISSLKKYGIAATLREGLADR 1390 (2622)
Q Consensus 1335 -~-----~~~i~~Ll~~L~~-------~~~~~~r~~Aa~~L~~l~~~l-----------g~~~l~~~~i~~~L~~~l~~~ 1390 (2622)
. ...+..++..+.. .+++..++.-+..+..+...+ ....+ ..+++.+..+..+.
T Consensus 286 ~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 286 PLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYLESFLAFTTHP 363 (1204)
T ss_dssp GGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHHHHHHHHHTSS
T ss_pred HHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHHHHHHHHHhCc
Confidence 0 1123344544321 112344444444444333111 11122 26788888888776
Q ss_pred CCHHHHHHHHHHHHHHHHHh----cccchhHHHHHHHHH---HHHcCCCC------------------------HHHHHH
Q 000050 1391 NSAKRREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQV------------------------VAVREA 1439 (2622)
Q Consensus 1391 ~~~~~R~~al~al~~La~~~----~~~~~~~v~~ilp~l---l~~l~D~~------------------------~~VR~a 1439 (2622)
+..+-..++.....+.+.. ...+.+++.++++.+ +..+.-+. ...|+.
T Consensus 364 -~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~ 442 (1204)
T 3a6p_A 364 -SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQ 442 (1204)
T ss_dssp -CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred -cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHH
Confidence 4544444444444344332 134667888888887 44332111 134666
Q ss_pred HHHHHHHHHHhhcHHhHHhhHHHHHhhccC-------------------------CChhhHHHHHHHHHHHHhhCchhh-
Q 000050 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLED-------------------------KAWRTKQSSVQLLGAMAYCAPQQL- 1493 (2622)
Q Consensus 1440 a~~al~~i~~~l~~~~v~~ilp~Ll~~L~~-------------------------~~w~~r~~a~~~L~~la~~~p~~l- 1493 (2622)
..+.++.++...+..++..+.+.+.+.+.+ ..|....+....++++++......
T Consensus 443 ~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e 522 (1204)
T 3a6p_A 443 QGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLN 522 (1204)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777788887777666666666666443321 235555555666666665432211
Q ss_pred hhhhh-hhHHHHhhhh---cCCCHHHHHHHHHHHHHHhhhcCC-h-hHHhHHHHHHhhcCCCCh-hHHHHHHHHHhcccc
Q 000050 1494 SQCLP-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTFV 1566 (2622)
Q Consensus 1494 ~~~L~-~ivp~L~~~L---~D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~ilp~Ll~~l~d~~~-~~r~al~~L~~~~~~ 1566 (2622)
..+++ .++|.+++.+ +..+|.+|..++.+++.+...+.. | .+..+++.++..+.++.. ..+
T Consensus 523 ~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~------------ 590 (1204)
T 3a6p_A 523 REEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK------------ 590 (1204)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT------------
T ss_pred cccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc------------
Confidence 12333 2445555543 446899999999999999887652 3 345555555555433110 000
Q ss_pred ccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCC---HHHHHHHHHHH
Q 000050 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARAI 1643 (2622)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~---~~vR~~a~~aL 1643 (2622)
.. -.+.+.++|..|+..+..+|... ++.+.||++.+...+...+.... ..-+..-..++
T Consensus 591 ---~~-------------~~~~~k~vr~~a~~al~~L~~~~--~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal 652 (1204)
T 3a6p_A 591 ---AP-------------RTRAVRNVRRHACSSIIKMCRDY--PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEAL 652 (1204)
T ss_dssp ---SC-------------CCHHHHHHHHHHHHHHHHHHHHC--HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHH
T ss_pred ---cc-------------ccHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHH
Confidence 00 00012478999999999999865 35789999999999988886443 56667777888
Q ss_pred HHHHhhhCCC-----CchhhHHHHHHHhhh
Q 000050 1644 GSLIRGMGEE-----NFPDLVSWLLDALKS 1668 (2622)
Q Consensus 1644 ~~L~~~~g~~-----~~~~ll~~Ll~~L~~ 1668 (2622)
+.++..+++. ++..+++.+++.+.+
T Consensus 653 ~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 653 VLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 8886655543 355566666665543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-06 Score=111.09 Aligned_cols=261 Identities=14% Similarity=0.145 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCC
Q 000050 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPS 1936 (2622)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~ 1936 (2622)
..+|..|+-.+|.+..++.+ . .+.+.|...+.+.+...|..|+.+||.+.-..|.. +...++..+. .+.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~--e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~ 521 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN--I----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQH 521 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC--H----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSC
T ss_pred HHHHHHHHHHHHHHhcCCCC--H----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCc
Confidence 57888888899887655543 1 23444455556667778888888998775444432 4455555444 3557
Q ss_pred hhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccC
Q 000050 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2622)
Q Consensus 1937 ~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L-~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2622)
.++|..++.+||.+. .+.. ..++.+.+.| .+.++.+|..++-+++--+...|.. ..+..|+..+.++
T Consensus 522 e~vrR~aalgLGll~--~g~~-------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---~aIq~LL~~~~~d 589 (963)
T 4ady_A 522 GNITRGLAVGLALIN--YGRQ-------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---SAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHHHHHHHHT--TTCG-------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhh--CCCh-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccC
Confidence 789999999999763 2221 1223333333 4789999999888777554434431 2233333333221
Q ss_pred CchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHh-CCChhhhHhhhHHHHHHhc-CCCCHHHHHH
Q 000050 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHLGTILPALLSAM-GDDDMDVQSL 2093 (2622)
Q Consensus 2016 ~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~-g~~l~~~l~~il~~Ll~~l-~~~~~~vr~~ 2093 (2622)
.. ...+..|+-+|+.+. |. +..++.++..+ .+.++.+|..
T Consensus 590 ~~--------------------------------d~VRraAViaLGlI~~g~------~e~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 590 SN--------------------------------DDVRRAAVIALGFVLLRD------YTTVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp SC--------------------------------HHHHHHHHHHHHHHTSSS------CSSHHHHTTTGGGCSCHHHHHH
T ss_pred Cc--------------------------------HHHHHHHHHHHHhhccCC------HHHHHHHHHHHHhcCCHHHHHH
Confidence 11 011223444444432 33 23456666655 5678999999
Q ss_pred HHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcC--CChhHHH
Q 000050 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVA 2171 (2622)
Q Consensus 2094 a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d--~d~~V~~ 2171 (2622)
+..+++.+....+ ...++..|.....|.+..||+.|+.++|.+...+.....+.+.++++.|.....| .|..++-
T Consensus 632 AalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~f 708 (963)
T 4ady_A 632 TAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKF 708 (963)
T ss_dssp HHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHH
Confidence 9999988754332 3456666777778999999999999999998877777778889999999988865 4566777
Q ss_pred HHHHHHHHH
Q 000050 2172 AAWEALSRV 2180 (2622)
Q Consensus 2172 ~a~~aL~~l 2180 (2622)
.+.-|.+-+
T Consensus 709 ga~iAqGll 717 (963)
T 4ady_A 709 GACVAQGIM 717 (963)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=118.49 Aligned_cols=189 Identities=19% Similarity=0.205 Sum_probs=153.7
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2622)
+.++.....+.++..+.|+++.||..|..++..+. ....+|.+++.+.++++.+|..++..|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIG-------DERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcC-------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 34455678899999999999999999999988762 23568889999999999999999999988742
Q ss_pred hhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChh
Q 000050 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2622)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~ 1572 (2622)
+..++.+...++|+++.||..|+++|+.++. ...++.|.+.+.|++..+| .++..+.... .
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------D- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT------C-
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC------C-
Confidence 3567888889999999999999999999864 2467888888899998888 5666665321 1
Q ss_pred hhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1573 ~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
...++.|...+.|.++.+|..+..+++.+.. +..++.+...+.|+++.||..|..+|+.+-
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2467888889999999999999999998732 347788888889999999999999998753
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-08 Score=117.94 Aligned_cols=185 Identities=19% Similarity=0.214 Sum_probs=127.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2622)
..++.++..+.|+++.+|..+..++..+. ....+|.+++.+.++++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~-------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIG-------DERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 45777888889999999999888887662 24567888888888889999999998887642 45
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000050 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
.++.+.+.++|+++.||..|+.+|+.++. ...++.|.+.+.|++..+| .++..+.... . ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~---~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------D---ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------C---GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------C---HHHH
Confidence 66778888899999999999999988864 2355667777777776666 4455544311 0 1245
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
+.|...++|.++.+|..+...++.+.. +..++.+...+.|+++.||..|..+|+.+...
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 566666666677777777777666522 23556666666666777777777777665543
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.3e-06 Score=110.62 Aligned_cols=474 Identities=13% Similarity=0.099 Sum_probs=286.7
Q ss_pred HHhcCCCCCCChHhHHHHhc--CCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHH
Q 000050 1121 WDRYGYDFGTDYSGLFKALS--HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2622)
Q Consensus 1121 w~~~~~~~~~~~~~Ll~~l~--~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2622)
....++.+++ +.-|+.++. .....+|..+--+++...+.+++.+...+....+........ +..-.--..+.
T Consensus 160 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~-----~~~~~~~~~~~ 233 (778)
T 3opb_A 160 LNKFKYNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEI-----DVGNDPLSIIV 233 (778)
T ss_dssp HHHSCCCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCSSCHHHHHH
T ss_pred HHHcCccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhcc-----CCCCccHHHHH
Confidence 3445566654 556666664 578899999999998888888877777666666543211100 00011122333
Q ss_pred HHHHHhhhh--------hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccc-h----hhhhHHHHHHHhcC
Q 000050 1199 LALHSAADV--------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-N----VSLLFPIFENYLNK 1265 (2622)
Q Consensus 1199 ~al~~~~~~--------~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~-~----~~~llp~~~~~l~~ 1265 (2622)
.++..+.+. |-.+. +.+.+....-..++..+..++++.+... +..+ . .+..+|.+++.+..
T Consensus 234 ~~l~~lfPi~p~~~s~lfl~e~---~~~~l~~~~~~~~~~~~~~a~L~lLsaA---Ci~~~cR~~I~~~~~~~L~~~l~~ 307 (778)
T 3opb_A 234 KTLSELYPSLTTLCSEIFLTKG---LSKLFKKRVFEEQDLQFTKELLRLLSSA---CIDETMRTYITENYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHTTTTHHHHHHHHSTTT---HHHHHHHHHHSSCCHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCHHHHHHHHcccc---HHHHHHHHHhcccchHHHHHHHHHHHHH---hCCcHHHHHHHHhHHHHHHHHhcc
Confidence 333333332 22222 2222322222346666766666665432 1111 2 23344555555432
Q ss_pred CCCChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhh--hccc---hHHHHH
Q 000050 1266 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--MQDE---APTLVS 1340 (2622)
Q Consensus 1266 ~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~--~~~~---~~~~i~ 1340 (2622)
+.+|..+...+..+...-...+..+..+.+.+...+.++..+.|..+.+.|.-+... +++. .+..+.
T Consensus 308 --------~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~ 379 (778)
T 3opb_A 308 --------EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTE 379 (778)
T ss_dssp --------GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHH
Confidence 355665555555555433334556788999999999998766677788887655321 1111 245567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhCcc----------------------------------------chhhhcHH
Q 000050 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS----------------------------------------SLKKYGIA 1380 (2622)
Q Consensus 1341 ~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~----------------------------------------~l~~~~i~ 1380 (2622)
.|++.+....+...-.++...|+.+....... .+...+++
T Consensus 380 ~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvI 459 (778)
T 3opb_A 380 ILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELI 459 (778)
T ss_dssp HHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCH
Confidence 77777764344455666666666666532210 00112567
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHhhcHHh
Q 000050 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVA---VREAAECAARAMMSQLSAQG 1455 (2622)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~---VR~aa~~al~~i~~~l~~~~ 1455 (2622)
+.|...+.+. ++..|+.++.++..++... .....+. ..++.++..+.+.... +|..|..++..+.....+..
T Consensus 460 p~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~--~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 460 SFLKREMHNL-SPNCKQQVVRIIYNITRSK--NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 7777777776 7899999999999998542 2233332 5788999998876544 89999999988876554332
Q ss_pred ------HHhhHHHHHhhccC-CCh-------------hhHHHHHHHHHHHHhhCc---hhhhh-hhh--hhHHHHhhhhc
Q 000050 1456 ------VKLVLPSLLKGLED-KAW-------------RTKQSSVQLLGAMAYCAP---QQLSQ-CLP--KIVPKLTEVLT 1509 (2622)
Q Consensus 1456 ------v~~ilp~Ll~~L~~-~~w-------------~~r~~a~~~L~~la~~~p---~~l~~-~L~--~ivp~L~~~L~ 1509 (2622)
....+|+|++.|.. +.- ..+..|+.+|.+++.... +.... -+. ..+|.+.+++.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 13678999988872 221 227789999999998652 22222 232 48899999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCChhH--HhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcC
Q 000050 1510 DTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2622)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~i--~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d 1587 (2622)
+.+..||.+|++++.+++.. ++. +.+ ....+ +.-..-++.+...++.
T Consensus 617 s~n~~VrrAA~elI~NL~~~---~e~i~~k~-------~~~~~---------------------~~~~~rL~lLV~Ll~s 665 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSH---PLTIAAKF-------FNLEN---------------------PQSLRNFNILVKLLQL 665 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTS---GGGTGGGT-------SCCSS---------------------HHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHHhCC---cHHHHHHH-------HhhcC---------------------chhhccHHHHHHHHcC
Confidence 99999999999999999852 221 111 00000 1101124566677777
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCcccchH--hhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh
Q 000050 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGM 1650 (2622)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~ 1650 (2622)
.+.++|+.|+.++.++... .+......+ +..++.+...+.+ +++++|..++.++..++...
T Consensus 666 ~D~~~r~AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 666 SDVESQRAVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 8899999999999988642 111111111 2467777777777 89999999999999999743
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-09 Score=146.13 Aligned_cols=220 Identities=14% Similarity=0.047 Sum_probs=118.0
Q ss_pred hhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000050 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2622)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~ 2001 (2622)
..++|++.. |++++++.|..||.+|++++.......+.-+...+.+.+..++.|++.+||.+|+.+|..++...|....
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 467777765 8899999999999999999864322222222234455667789999999999999999999887777655
Q ss_pred hh-----hHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhH-hhh
Q 000050 2002 DE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL-GTI 2075 (2622)
Q Consensus 2002 ~~-----ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l-~~i 2075 (2622)
+. ++|.|+..|+.......................++.+.+ ....++.+|++.....+.... ...
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~lL~~L~e~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITG---------SLLVLIGLLALARDEIHEAVATKQT 183 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHhccc
Confidence 43 677777666431110000000000000000000000000 112344444443222222111 345
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHHhhhccC-------hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHH-Hhhcc
Q 000050 2076 LPALLSAMG---DDDMDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYF-YKNSK 2144 (2622)
Q Consensus 2076 l~~Ll~~l~---~~~~~vr~~a~~al~~l~~~~~-------~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l-~~~~~ 2144 (2622)
+|.++..+. ....+++..+..|+..+...-. .++...++..++...++.++. |..++..+..+ +....
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni~~~~~~ 262 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNVFTSLQW 262 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhHhhhhhh
Confidence 666666652 2346789999999887765321 122223445555544454444 45555555544 44444
Q ss_pred ccccccHH
Q 000050 2145 LYLVDEAP 2152 (2622)
Q Consensus 2145 ~~l~~~~~ 2152 (2622)
.+++.+..
T Consensus 263 ~d~s~~~~ 270 (684)
T 4gmo_A 263 MDHSPGKD 270 (684)
T ss_dssp BTTBCCGG
T ss_pred hhcchhhH
Confidence 55555443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=99.65 Aligned_cols=215 Identities=18% Similarity=0.291 Sum_probs=165.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCccch
Q 000050 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2622)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~-d~d~~V~~~a~~aL~~l~~~~~~~~l 2189 (2622)
.+++..+...+.|+-|.||..|+..+..+.+..+ .....++..|+.++. +..-...+....+++.+....
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~----- 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK----- 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence 4677888888989999999999999999887543 344566777777755 444455555566666654322
Q ss_pred hhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh
Q 000050 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2622)
Q Consensus 2190 ~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2622)
|+.+.+++|++.....-|++..|.+...+|+.+....+ ..+..
T Consensus 102 ----------------------------------Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l~~~-- 144 (253)
T 2db0_A 102 ----------------------------------PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-MLMAS-- 144 (253)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HHHHH--
T ss_pred ----------------------------------HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HHHHH--
Confidence 34456788889888888999999999999999997765 33333
Q ss_pred hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhh
Q 000050 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP 2349 (2622)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ 2349 (2622)
+..-+...+.+. +..-|.+++..++.++......+.||+|.|. ..|.|.|+-||.+|..+|++++...|.+.+
T Consensus 145 --v~rdi~smltsk-d~~Dkl~aLnFi~alGen~~~yv~PfLprL~----aLL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 145 --IVRDFMSMLSSK-NREDKLTALNFIEAMGENSFKYVNPFLPRII----NLLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp --HHHHHHHHTSCS-SHHHHHHHHHHHHTCCTTTHHHHGGGHHHHH----GGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred --HHHHHHHHhcCC-ChHHHHHHHHHHHHHhccCccccCcchHHHH----HHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 333345556654 6778999999999888776667778888765 478899999999999999999999998999
Q ss_pred HHHHHHHhhhcCCHhHHHHHHHHHHHHHh
Q 000050 2350 LVGDLLSSLQVSDAGIREAILTALKGVLK 2378 (2622)
Q Consensus 2350 ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~ 2378 (2622)
.+...++.+++++..++..+-.+|..+.-
T Consensus 218 ii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 218 VVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888877653
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-05 Score=103.82 Aligned_cols=554 Identities=13% Similarity=0.099 Sum_probs=293.9
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV- 1456 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v- 1456 (2622)
.++..++..+...++. ...--+-++-.+...++-.|.. +.-++..+ ++.-..++||..+.-+.....+..+...-
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 5666666666533344 3334444555555555544433 22222222 23456778998887776666555543322
Q ss_pred --HhhHHHHH-hhccCCChhhHHHHHHHHHHHHhhCchhhhhhh--hhhHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhc
Q 000050 1457 --KLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1457 --~~ilp~Ll-~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L--~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
..++..++ +.=.+..-..-..++.++.++.-..|.....-+ ....+.+.+.+ ......+..++.+.|...+..-
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 23333222 110111122233334444444333443322211 23455555555 3345666677766666655322
Q ss_pred CChh--HHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhc
Q 000050 1531 KNPE--IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2622)
Q Consensus 1531 ~~~~--i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~ 1607 (2622)
..++ .+..++.|...+.+ ..+| .|+-.|.+..........+...+.+.+.+.+.+...+.+..|.+.+..+.-.
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~- 364 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK- 364 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-
Confidence 1122 26677888877765 3445 3444444422222222345566888899999887766788888888877431
Q ss_pred CCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHh-hhcCChHHHHHHHH
Q 000050 1608 TEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDAL-KSDNSNVERSGAAQ 1680 (2622)
Q Consensus 1608 ~~~~~l~~~l~~ll~~L~~~L~d-~~~~vR~~a~~aL~~L~~~~g~~-----~~~~ll~~Ll~~L-~~~~~~~~r~~a~~ 1680 (2622)
.+.++....-+.+++.|.+.+.+ .+..+-..+...|+.+....... .+..+.+..-... ..+...... ....
T Consensus 365 ~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~~~~ 443 (778)
T 3opb_A 365 ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-AAKE 443 (778)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-HHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-cchH
Confidence 11111111224567778888874 56677788888888887754321 1112211111100 000000000 0001
Q ss_pred HHHH-HHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhh-H-HhHHHHHHhhcCCCChH---HH
Q 000050 1681 GLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-L-QQVLPAILDGLADENES---VR 1754 (2622)
Q Consensus 1681 ~L~~-i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~-l-~~ii~~ll~~L~d~~~~---VR 1754 (2622)
.+.+ ....+-. ...+|.+...+.+.++.+|+.+..++..++..- ..... + ...+++++..+....+. +|
T Consensus 444 ~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~--~~R~~lvqqGal~~LL~lL~s~~~~~~~~k 518 (778)
T 3opb_A 444 DILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSK--NFIPQLAQQGAVKIILEYLANKQDIGEPIR 518 (778)
T ss_dssp HHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG--GGHHHHHHTTHHHHHHHHTTCC---CCHHH
T ss_pred HHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCCcchHHH
Confidence 1111 1111111 357888889898999999999999999998542 22222 2 23788888888876543 78
Q ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHH
Q 000050 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834 (2622)
Q Consensus 1755 ~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~ 1834 (2622)
..|..++..+.....+.. +++ . .. +...++.++.-+.... +.+.. .
T Consensus 519 ~~AA~ALArLlis~np~~---~f~--------~-~~----~~~aI~pLv~LL~~~~-------~~~~~-~---------- 564 (778)
T 3opb_A 519 ILGCRALTRMLIFTNPGL---IFK--------K-YS----ALNAIPFLFELLPRST-------PVDDN-P---------- 564 (778)
T ss_dssp HHHHHHHHHHHHTSCHHH---HSS--------S-SC----STTHHHHHHHTSCCSS-------SCSSC-C----------
T ss_pred HHHHHHHHHHHhcCCHHH---HcC--------C-Cc----cccchHHHHHHcCCCC-------Ccccc-c----------
Confidence 888888887764322110 000 0 00 0012222221111000 00000 0
Q ss_pred HHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhCh---hhH-HHHHH--HHHHHHHHHhcCCCHHHHHHHHHH
Q 000050 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSERRQVAGRA 1908 (2622)
Q Consensus 1835 ~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p---~~l-~~~l~--~ll~~L~~~L~s~~~~~R~~A~~~ 1908 (2622)
++ .+......-+..|+.+|..++.... +.. ..++. ..++.+...+.+.+..+|..|+.+
T Consensus 565 --------------l~-~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~el 629 (778)
T 3opb_A 565 --------------LH-NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLEL 629 (778)
T ss_dssp ------------------CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred --------------cc-ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 00 0000111235567777777877541 222 33454 478889999999999999999999
Q ss_pred HHHHHHHhcc---chh----hh---HHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhH--HhHHHHHHHHhcC
Q 000050 1909 LGELVRKLGE---RVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCD 1976 (2622)
Q Consensus 1909 L~~lv~~~~~---~~l----~~---llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l--~~ll~~l~~~L~d 1976 (2622)
++.++..-.. .+. +. =++.|...+...+.++|.+++.+|+.+.... +......+ ...++.+...+.+
T Consensus 630 I~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 630 ISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-PLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHccccHHHHHHHHhc
Confidence 9999863321 221 12 2678888888899999999999998864322 22112222 3466777777777
Q ss_pred --CcHHHHHHHHHHHHHHHH
Q 000050 1977 --SILEVRESAGLAFSTLFK 1994 (2622)
Q Consensus 1977 --~d~~VR~~A~~al~~l~~ 1994 (2622)
.++++|..++.++..|.+
T Consensus 709 ~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 709 QIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999976
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-07 Score=112.12 Aligned_cols=237 Identities=19% Similarity=0.125 Sum_probs=175.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh--
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-- 1455 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-- 1455 (2622)
.++.+.+.+.+. ++..|..|+.++..++...+......+. ..+|.++..+.++++.+|..+..++..+...-+...
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 466777888877 6899999999999988654422222222 589999999999999999999999998875422221
Q ss_pred -H-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1456 -V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1456 -v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
+ ...+|.++..+.+++..++..++.+|+.++...+...... -...+|.+.+++.++++.||..|+++|+.++..-
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-- 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--
Confidence 1 3578999999999999999999999999997555432211 2468899999999999999999999999998532
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc
Q 000050 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2622)
Q Consensus 1533 ~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2622)
+... ..+. -..++|.+...+.+.++.+|..++.++++++.. .+..
T Consensus 160 ~~~~---------------------~~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 204 (252)
T 4hxt_A 160 DEAI---------------------KAIV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSA 204 (252)
T ss_dssp HHHH---------------------HHHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHH
T ss_pred HHHH---------------------HHHH------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHH
Confidence 1110 0000 013567777777788889999999999998862 2111
Q ss_pred ccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000050 1613 MIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1613 l~~~-l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
.... -...++.+.+.+.++++.+|..|..+|+.+....+..
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1111 2357899999999999999999999999999865544
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.5e-06 Score=115.07 Aligned_cols=764 Identities=13% Similarity=0.107 Sum_probs=382.8
Q ss_pred ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhcc----CCChhhHHHHHHHHH--HH
Q 000050 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLG--AM 1485 (2622)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~--~l 1485 (2622)
+.+.+.-..++..++......-..||..|+.++..++..++. ....++|.+++.|+ +.+...-+||+.+|. .+
T Consensus 125 r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g-s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~ 203 (997)
T 1vsy_5 125 RKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVG-SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKI 203 (997)
T ss_dssp BCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHH
T ss_pred cCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhh
Confidence 346666778888888888888999999999999999988743 45677888887764 456677788888774 44
Q ss_pred HhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH-----HhHHHHHHhhcCCCChhHHHHHHHH
Q 000050 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2622)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~ilp~Ll~~l~d~~~~~r~al~~L 1560 (2622)
..... .--..++.+++.++++....+|.|+..+..+...+...+..|.. ..++ ..+..|++.+..+++..
T Consensus 204 ~~~~~-~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~d~~i~~~~~~~ 278 (997)
T 1vsy_5 204 HRKLM-TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPPDGTINLQVEAV 278 (997)
T ss_dssp HHHGG-GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCSCSSTTSHHHHH
T ss_pred hhHHh-cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCCcHHHHHHHHHH
Confidence 33222 12244678899999988878899988888777777765543321 1111 22222222111111110
Q ss_pred Hhc--cccccCChhhhhhHHHHHHhhh-cCCC--HHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHH
Q 000050 1561 LQT--TFVNTVDAPSLALLVPIVHRGL-RERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2622)
Q Consensus 1561 ~~~--~~~~~~~~~~l~~i~p~L~~~l-~d~~--~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~v 1635 (2622)
-.. .-... -...+..+...+.... ++.. |+....++..+-++.... -.|+-+.++..+.+.+.+++|.+
T Consensus 279 ~~~~~~~r~~-~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~-----d~~~~~~~v~~~~~~l~~dhp~~ 352 (997)
T 1vsy_5 279 KLAKKKKREY-YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNL-----ESKPDKRAVFSIISQISTKHPEI 352 (997)
T ss_dssp HHHTTHHHHH-HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCS-----SCCCCHHHHHHHHGGGGGCCHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHhhcCCCHHH
Confidence 000 00000 0011122332333333 3345 888888777755554332 13456789999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCC-----CchhhHHH--HHHHhh----hcCChHHHHHHHHHHHHHHHHhch-h-HHH-h-----
Q 000050 1636 RSVAARAIGSLIRGMGEE-----NFPDLVSW--LLDALK----SDNSNVERSGAAQGLSEVLAALGT-V-YFE-H----- 1696 (2622)
Q Consensus 1636 R~~a~~aL~~L~~~~g~~-----~~~~ll~~--Ll~~L~----~~~~~~~r~~a~~~L~~i~~~~g~-~-~l~-~----- 1696 (2622)
|..|..++..+....... ....+... .-..+. .+...... ...++ ..... . +++ .
T Consensus 353 R~~a~~~l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~-----~~~~~-~~~~~~~yfid~~~~~Gw 426 (997)
T 1vsy_5 353 IHLVVKSLLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKT-----FTEEM-NNFDNPKYFIDLRAYVGW 426 (997)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHH-----HHHHH-SCCSSCCCBCCSCCCSBT
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHH-----HHHHH-hcccCCccceeCCCCCeE
Confidence 999999998888863210 00000000 000000 00000000 00000 00000 0 000 0
Q ss_pred Hh-HHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHH----HHhh
Q 000050 1697 IL-PDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV----EHYA 1769 (2622)
Q Consensus 1697 ll-p~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv----~~~~ 1769 (2622)
+. |.-+..... +.-+..+.--.++..+..... ..++.+++..+.+- ++..+.-+..-...+..++ .+++
T Consensus 427 l~Wp~~~~vy~p~~~~l~~~~~e~~i~~~f~~~~~---~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~ 502 (997)
T 1vsy_5 427 LCWGRLMYVMSPKALKLNLRENELEVLKTAGHLLT---REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFC 502 (997)
T ss_dssp TBCCSEEEEECTTCCCCCCCHHHHHHHHHHHTTCC---HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTC
T ss_pred eeeCCceeEeCCCCCCCCCCHHHHHHHHHHHhhcC---HHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccc
Confidence 00 000000000 000011111111222222122 23455555554322 1111111223333334444 3456
Q ss_pred hchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHH
Q 000050 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2622)
Q Consensus 1770 ~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L 1849 (2622)
...++.+.|.++....|++-.-...+++.++.++.... .+
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK-----~w----------------------------------- 542 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSK-----FM----------------------------------- 542 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCS-----SC-----------------------------------
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccC-----CC-----------------------------------
Confidence 66666777777665555443344455555555532100 00
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHH
Q 000050 1850 YMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1928 (2622)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L 1928 (2622)
..........-+.|.+-+.+. +-.++....-..|+.-+....+++-.+.++..+
T Consensus 543 -------------------------~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l 597 (997)
T 1vsy_5 543 -------------------------SVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHF 597 (997)
T ss_dssp -------------------------CTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHH
Confidence 011122233334444555555 344444444444555555555555556666655
Q ss_pred hh--h-c--CCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhh
Q 000050 1929 SR--G-L--KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003 (2622)
Q Consensus 1929 ~~--~-L--~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ 2003 (2622)
.. . + .+...-....-...|..++...+-. ... ...++..+. +..+...||++....+..+....-......
T Consensus 598 ~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr-~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~ 673 (997)
T 1vsy_5 598 INADGMFDRESDAATHQTSKIYMLRSILMSMEFR-APD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISD 673 (997)
T ss_dssp TCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTS-SCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSC
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccc-ccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 32 1 1 1111111111222333333333211 111 233333333 777889999999988888865532111111
Q ss_pred hHHHHHHhcccC---------CchhHHHHHHHHHHhhh---ccccccchhhhhhcCCCchH----HHHHHHHHHHHhCCC
Q 000050 2004 IVPTLLHALEDD---------QTSDTALDGLKQILSVR---TTAVLPHILPKLVHLPLSAF----NAHALGALAEVAGPG 2067 (2622)
Q Consensus 2004 ilp~Ll~~L~~~---------~~~~~aL~~L~~il~~~---~~~ilp~Lip~L~~~~~~~~----~~~aL~sLa~~~g~~ 2067 (2622)
+..+++.-... .........+..++..- ...+- ...|. ...... ....+..|...++..
T Consensus 674 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~-~~~~~---~~~~s~y~~~~kTvl~wl~~~l~~~ 748 (997)
T 1vsy_5 674 -PTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVV-GLNPQ---QFIKTDYFYRTSTIFYWIKEMARGP 748 (997)
T ss_dssp -HHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTS-SCCST---TTTTSHHHHHHHHHHHHHHHHSSGG
T ss_pred -HHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhccc-ccCcc---ccchHHHHHHHHHHHHHHHHHhcCC
Confidence 12233221111 00122222233322110 00000 00000 000011 123444555555554
Q ss_pred ----hhhhHhh-hHHHHHHhcCCCCH-HHHHH-HHHHHHHhhhc-cChhcHHHHHHHHHhhcC-CCChhHHHHHHHHHHH
Q 000050 2068 ----LNFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLV-IDEEGVESLVSELLKGVG-DNQASIRRSSAYLIGY 2138 (2622)
Q Consensus 2068 ----l~~~l~~-il~~Ll~~l~~~~~-~vr~~-a~~al~~l~~~-~~~~~l~~ll~~Ll~~l~-d~~~~vR~~A~~~L~~ 2138 (2622)
+.++++. ++|.++.....++. ++... +..++..+... +..+.++.++..+.+..+ +.+| +|.+++..+..
T Consensus 749 ~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~ 827 (997)
T 1vsy_5 749 NKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQH 827 (997)
T ss_dssp GHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHH
T ss_pred CccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHH
Confidence 7788887 88888777665544 55444 44455555332 244567778888877666 6789 99999999877
Q ss_pred H-HhhccccccccHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc-CccchhhHHHHHHHHHhhchhhhhhhhcCCc
Q 000050 2139 F-YKNSKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215 (2622)
Q Consensus 2139 l-~~~~~~~l~~~~~~il~~L~~~l~d~d-~~V~~~a~~aL~~l~~~~-~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~ 2215 (2622)
+ +.+.-.--......++..++.+|.|+. .+||+.|..+|+.++... +......++..++..
T Consensus 828 ~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~---------------- 891 (997)
T 1vsy_5 828 FLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKG---------------- 891 (997)
T ss_dssp HHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTS----------------
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH----------------
Confidence 7 444322122334577888888999999 999999999999998765 322221222111110
Q ss_pred cccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHH
Q 000050 2216 ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 2295 (2622)
Q Consensus 2216 ~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~ 2295 (2622)
+.-.+.. ...+.. .. . +...|-++...
T Consensus 892 -----~~~~~~~---------------~~~~~~-----------~~-~---------------------~~~~rH~aVLg 918 (997)
T 1vsy_5 892 -----LDVNKYT---------------SKERQK-----------LS-K---------------------TDIKIHGNVLG 918 (997)
T ss_dssp -----STTTSSC---------------HHHHHH-----------HH-H---------------------HCHHHHHHHHH
T ss_pred -----Hhhcccc---------------cccccc-----------cc-h---------------------HHHHHHHHHHH
Confidence 0000000 000000 00 0 00245677777
Q ss_pred HHHHHHhcCCCc--cCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 000050 2296 LSIIIRKGGIAL--KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2296 L~~L~~~~~~~l--~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2622)
|+.++...|..+ -+++|++...+.+...|+.+ ++..+-++|+..-+
T Consensus 919 L~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 919 LGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 888888888776 67999999888888888654 99999999998855
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=115.11 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=168.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh--
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-- 1455 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-- 1455 (2622)
.++.+.+.+.+. ++..|..|+.++..+...........+ ...+|.++..+.++++.+|..|..++..+...-+...
T Consensus 13 ~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456677777776 688899999999655543222122222 2578999999999999999999999998876332221
Q ss_pred H--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchh-hhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1456 v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
+ ...+|.+++.+.++++.++..++.+|+.++...+.. ..-.-..++|.+.+++.++++.||..|+++|+.++..-
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-- 169 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-- 169 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--
Confidence 1 357899999999999999999999999999876654 22223468899999999999999999999999998532
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc
Q 000050 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2622)
Q Consensus 1533 ~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2622)
+... ..+. -..++|.|.+.+.+.++.++..++.++++++.. .+..
T Consensus 170 ~~~~---------------------~~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 214 (252)
T 4db8_A 170 NEQI---------------------QAVI------------DAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQ 214 (252)
T ss_dssp HHHH---------------------HHHH------------HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS--CHHH
T ss_pred hHHH---------------------HHHH------------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC--CHHH
Confidence 1100 0000 012466777777777889999999999999852 2211
Q ss_pred ccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1613 MIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1613 l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
...+. ...++.+..++.++++.+|..|..+|+.++
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 11222 247888999999999999999999998765
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=110.68 Aligned_cols=184 Identities=22% Similarity=0.194 Sum_probs=148.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2622)
...+.+.+.+.+. ++.+|..|+.+++.+.. ...++.++..+.|+++.||..+..++..+. -.
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------~~ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------DE 75 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CG
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------CH
Confidence 4567778888887 89999999998876432 245678888999999999999999887762 23
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
..+|.+.+.+.++++.+|..++.+|+.+.. +..++.+..+++|+++.||..|+++|+.++. ..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 138 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 138 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HH
Confidence 567888899999999999999999998743 3567888889999999999999999999964 35
Q ss_pred HHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhh
Q 000050 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2622)
Q Consensus 1538 ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 1605 (2622)
.++.|...+.|++..+| .++.++... . -...++.|...+++.++.+|..|...++.+..
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~------~---~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEI------G---GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH------C---SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh------C---chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 67888899999998888 566666542 1 13467888888889999999999999987654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.4e-08 Score=112.12 Aligned_cols=185 Identities=22% Similarity=0.194 Sum_probs=147.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2622)
..++.+.+.+.+. ++.+|..|+.+++.+.. ...+|.++..+.|+++.||..+..++..+. ..
T Consensus 19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------~~ 80 (211)
T 3ltm_A 19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------DE 80 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------CG
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------CH
Confidence 4567778888876 89999999988776432 245788888999999999999999988772 24
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
..+|.+++.+.++++.+|..++..|+.+.. +..++.|.++++|+++.||..|+.+|+.++. ..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 143 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 143 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------HH
Confidence 577888899999999999999999998743 3567888899999999999999999999864 24
Q ss_pred HHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1538 ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
.++.|...+.|++..+| .++.+|.... -...++.|...+++.++.+|..|...++.+...
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEIG---------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 67888888999999888 5666665321 135678888888899999999999999887653
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-07 Score=121.88 Aligned_cols=339 Identities=14% Similarity=0.131 Sum_probs=221.4
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCch-hhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh-cCCh-hH
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV-IKNP-EI 1535 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~-~~~~-~i 1535 (2622)
.+|.++..|.++++..+..|+.+|..++...+. ...-.-...+|.|+++|.++++.++..|+++|..++.. -.+. .+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 367788888888888899999999988865443 11222356789999999999999999999999999874 1111 12
Q ss_pred --HhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhh--------cC--------CCHHHHHH
Q 000050 1536 --ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETKKK 1595 (2622)
Q Consensus 1536 --~~ilp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l--------~d--------~~~~vr~~ 1595 (2622)
...+|.|.+.+. +++..++ .+..+|.................+|.|.+.+ .+ .+..+.+.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 356899999998 6666666 4555554422222222222236778888877 22 23566679
Q ss_pred HHHHHHHhhhhcCCCCcccchH--hhhHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhh-----------------
Q 000050 1596 AAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGM----------------- 1650 (2622)
Q Consensus 1596 a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d------~~~~vR~~a~~aL~~L~~~~----------------- 1650 (2622)
|+.++.+++.. ++...... +..++.|..++.+ ++..+.+.+..++..+....
T Consensus 163 a~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 163 ATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 99999999863 21111111 2466666666653 34456666666666553110
Q ss_pred -----------------------------------CCC--CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch--
Q 000050 1651 -----------------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-- 1691 (2622)
Q Consensus 1651 -----------------------------------g~~--~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~-- 1691 (2622)
|-+ .....++.+...|.+......+..++.+|+.++.+-+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 000 12345777778887766666777788889888764332
Q ss_pred -----hHH--HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH-HhHHHHHHhhcCCCC------hHHHHHH
Q 000050 1692 -----VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADEN------ESVRDAA 1757 (2622)
Q Consensus 1692 -----~~l--~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~------~~VR~~a 1757 (2622)
..+ ...+|.+++.+.+++..+|..++.++..++.. ......+ ...+|++.+.|...+ +++...+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 112 35689999999999999999999999999863 2222222 458999999998753 3566677
Q ss_pred HHHHHHHHHHhhhc--hh--hhhHHHHhhccCCC-chHHHHHHHHHHHHH
Q 000050 1758 LGAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1758 l~al~~lv~~~~~~--~i--~~llp~l~~~l~d~-~~rvR~~a~~ll~~l 1802 (2622)
+.++..++..-+.. .+ ...+|.+.+.+.+. +.+++..|..++..+
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 77777766432211 11 12567777777777 788888888777654
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-06 Score=111.72 Aligned_cols=351 Identities=16% Similarity=0.087 Sum_probs=223.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc---h--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---Ccc
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE---A--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GIS 1372 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~---~--~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~l---g~~ 1372 (2622)
-++.|+..|.++++++|..++.+|..+.....+. . ...++.|++.|. +.+...+..|+.+|..++.+- ...
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-CCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3567888889999999999999987765322111 1 235677777665 456789999999999998641 222
Q ss_pred chhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHc------------------CCCCH
Q 000050 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQVV 1434 (2622)
Q Consensus 1373 ~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l------------------~D~~~ 1434 (2622)
.+.....++.|.+.+.+..+...++.+..++..|+.. ...-...+...+|.|+..+ ..+++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 3334467888888888644677888888888888762 2111122344567766654 11257
Q ss_pred HHHHHHHHHHHHHHHhhcH--HhH---HhhHHHHHhhccC------CChhhHHHHHHHHHHHHhhCchhhh---------
Q 000050 1435 AVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLS--------- 1494 (2622)
Q Consensus 1435 ~VR~aa~~al~~i~~~l~~--~~v---~~ilp~Ll~~L~~------~~w~~r~~a~~~L~~la~~~p~~l~--------- 1494 (2622)
.|++.|..+++.+...-.. ..+ ..+++.|+..+.+ .+......++.+|.++++.......
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999988653222 111 3455666666542 4556778899999888875321110
Q ss_pred ---------------h--hhhhhHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHH
Q 000050 1495 ---------------Q--CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556 (2622)
Q Consensus 1495 ---------------~--~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~a 1556 (2622)
. .-+.+++.++.++.+ .++.++++|+.||..++..-. +.-.. .+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~-~~~~~---------------~~-- 348 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW-TYGRY---------------IR-- 348 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS-HHHHH---------------HH--
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc-cccHH---------------HH--
Confidence 0 123566778888853 578999999999999975211 10000 00
Q ss_pred HHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC-----
Q 000050 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP----- 1631 (2622)
Q Consensus 1557 l~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~----- 1631 (2622)
..+ .....+|.|.+.+...+.+++..|+.++.+++... ..+. ..-...+|.|.++|.+.
T Consensus 349 --~~v-----------~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~--~I~~g~ip~LV~LL~~~~~~~~ 412 (584)
T 3l6x_A 349 --SAL-----------RQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNKE--LIGKHAIPNLVKNLPGGQQNSS 412 (584)
T ss_dssp --HHH-----------TSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-SCHH--HHHHHHHHHHHHTSSSSSCSGG
T ss_pred --HHH-----------HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-hHHH--HHHhCCHHHHHHHhcCCccccc
Confidence 000 00235778888888888999999999999998742 2122 22456889999998865
Q ss_pred ---CHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhc-CChHHHHHHHHHHHHHHH
Q 000050 1632 ---IPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLA 1687 (2622)
Q Consensus 1632 ---~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~-~~~~~r~~a~~~L~~i~~ 1687 (2622)
..+++..|..+|+.++..-.+. .-...+|.|...+.+. .+..++..++..|..+..
T Consensus 413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 4577888888888877432111 1234667777777653 244455566666666543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-06 Score=114.93 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=220.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2622)
++.+..++.+. ++..+..|+.++..++..-.. ....+ ...+|.++.++.++++.++..|..++..+...-++. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566677776 688899999999888743221 22122 257999999999999999999999999997642222 1
Q ss_pred H--HhhHHHHHhhcc-CCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhh--------cCC--------CHHHH
Q 000050 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TDT--------HPKVQ 1516 (2622)
Q Consensus 1456 v--~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L--------~D~--------~~~VR 1516 (2622)
+ ...+|.+++.|. +++...+..++.+|..++.+..... .-....+|.|++++ .++ ++.|.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~-~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH-HHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 456899999998 7788999999999999998722211 11237888899888 322 45666
Q ss_pred HHHHHHHHHHhhhcCCh-hH---HhHHHHHHhhcCC------CChh-HHHHHHHHHhcccc-------------------
Q 000050 1517 SAGQTALQQVGSVIKNP-EI---ASLVPTLLMGLTD------PNDH-TKYSLDILLQTTFV------------------- 1566 (2622)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~-~i---~~ilp~Ll~~l~d------~~~~-~r~al~~L~~~~~~------------------- 1566 (2622)
..|+++|.+++..-.+. .+ ...+|.|...+.+ ++.. +..|+..+....+.
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999998751111 12 1567777776642 3322 22333322211000
Q ss_pred -----------c----------------------cCChhhhhhHHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCC-C
Q 000050 1567 -----------N----------------------TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEP-K 1611 (2622)
Q Consensus 1567 -----------~----------------------~~~~~~l~~i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~-~ 1611 (2622)
. ....-....+++.+...+.+ .++.++..|+.++.+++..-... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0 00000012345666666654 46899999999999998631110 0
Q ss_pred cc-cchH--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--CchhhHHHHHHHhhhcCC-----hHHHHHHHHH
Q 000050 1612 DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGAAQG 1681 (2622)
Q Consensus 1612 ~l-~~~l--~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~--~~~~ll~~Ll~~L~~~~~-----~~~r~~a~~~ 1681 (2622)
.+ .... ...+|.|.+++.+++.++|..|+.+|+.++..-.-. .-...+|.|.+.|...++ ..+...++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 11 1112 357899999999999999999999999998732111 124577888888876533 1234455666
Q ss_pred HHHHHHHhchh--HH--HhHhHHHHHhccCC-ChhhHHHHHHHHHHhh
Q 000050 1682 LSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2622)
Q Consensus 1682 L~~i~~~~g~~--~l--~~llp~l~~~l~~~-~~~vR~~al~~l~~L~ 1724 (2622)
++.++..-... .+ ...++.+.+.+.+. +..+++.+...+..+.
T Consensus 401 l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77766433221 12 35678888888888 8889998888887654
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.6e-07 Score=107.49 Aligned_cols=234 Identities=14% Similarity=0.151 Sum_probs=163.1
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH-HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhh
Q 000050 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776 (2622)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~l 1776 (2622)
+|.+++.+.++++.+|..++.++..++...+....... ..+++.+++.+.++++.+|..+..++..+......
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~------ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE------ 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH------
Confidence 56777888888888888888888888765432222222 24788888888888888888777776654321000
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCC
Q 000050 1777 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2622)
Q Consensus 1777 lp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~ 1856 (2622)
.+ ..+.+ ...++.+...+.+.
T Consensus 78 --------------~~--------------------------------------~~~~~-------~~~i~~l~~ll~~~ 98 (252)
T 4hxt_A 78 --------------AI--------------------------------------KAIVD-------AGGVEVLVKLLTST 98 (252)
T ss_dssp --------------HH--------------------------------------HHHHH-------TTHHHHHHHHTTCS
T ss_pred --------------HH--------------------------------------HHHHH-------CCCHHHHHHHHcCC
Confidence 00 00000 01233334445677
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhh
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRG 1931 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~-~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~ 1931 (2622)
+..+|..|+.+++.++...+.....+.. ..++.+++.+.+.++.+|..++.+|+.++...... .....+|.+...
T Consensus 99 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 178 (252)
T 4hxt_A 99 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH
Confidence 7889999999999998655543333332 46888889999999999999999999997643221 235688889999
Q ss_pred cCCCChhhHHhHHHHHHHHHHhhChhhHHHh-HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 000050 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2622)
Q Consensus 1932 L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~-l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g 1997 (2622)
+.++++.+|..++.+|+.+... .+...... -..+++.+...+.++++++|..|..+++.+....+
T Consensus 179 l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 179 LTSTDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998652 22222222 25688999999999999999999999999976543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-06 Score=113.36 Aligned_cols=343 Identities=13% Similarity=0.089 Sum_probs=210.2
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh-hhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh--cCCh-h
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP-E 1534 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~~-~ 1534 (2622)
-+|.+++.|.+++...+..|+..|..++...+..- .-.-...+|.|+++|.+.++.||..|+++|..++.. -.+. .
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 34455555555555555555555555554322211 111235679999999999999999999999999863 2222 1
Q ss_pred H--HhHHHHHHhhcCC-CChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhh------------------cCCCHHH
Q 000050 1535 I--ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAET 1592 (2622)
Q Consensus 1535 i--~~ilp~Ll~~l~d-~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l------------------~d~~~~v 1592 (2622)
+ ...+|.|++.+.. ++..++ .+..+|.................+|.|.+.+ ...+.++
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 2 3578888888875 455554 3443443321111111112223355555543 1124689
Q ss_pred HHHHHHHHHHhhhhcCC-CCcccchHhhhHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCCC------------
Q 000050 1593 KKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMGEE------------ 1653 (2622)
Q Consensus 1593 r~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~------d~~~~vR~~a~~aL~~L~~~~g~~------------ 1653 (2622)
+..|+.+|.+++..-.+ .+.+.. .+.+++.|...+. +++....+.|+.+|..|......+
T Consensus 209 ~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 209 LTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 99999999999863111 011111 1234445555543 355678888888888877543100
Q ss_pred -----------------CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch------hHH--HhHhHHHHHhccCC
Q 000050 1654 -----------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT------VYF--EHILPDIIRNCSHQ 1708 (2622)
Q Consensus 1654 -----------------~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~------~~l--~~llp~l~~~l~~~ 1708 (2622)
.-+..++.|+..+.......++..++.+|..++.+-+. ..+ +..+|.+++.+.++
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~ 367 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence 11245677788887655566777888888888753221 122 45689999999999
Q ss_pred ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCC--------ChHHHHHHHHHHHHHHHHhhh--ch-hh-hh
Q 000050 1709 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYAT--TS-LP-LL 1776 (2622)
Q Consensus 1709 ~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~--------~~~VR~~al~al~~lv~~~~~--~~-i~-~l 1776 (2622)
+..+++.+..++..|+...... ...-...+|.+...|.+. .+++...++.++..++..-.. .. ++ ..
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~ 446 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 9999999999999999764421 122345899999999875 356778888888776632111 11 11 26
Q ss_pred HHHHhhccCCC--chHHHHHHHHHHHHHH
Q 000050 1777 LPAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1777 lp~l~~~l~d~--~~rvR~~a~~ll~~ll 1803 (2622)
+|.+...+.+. ..+++..|..++..+.
T Consensus 447 I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 447 IEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 77777777664 6677888888887764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-07 Score=114.72 Aligned_cols=225 Identities=18% Similarity=0.178 Sum_probs=168.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccch-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--ccch
Q 000050 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISSL 1374 (2622)
Q Consensus 1302 ~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~-----~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg--~~~l 1374 (2622)
++.+...+.++++++|..++.++..++....+.. ...++.+++.|... +...|..|+.+|..++.+.. ...+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4566777778888999999999976654422111 23566677666544 47899999999999886322 1122
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000050 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2622)
Q Consensus 1375 ~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2622)
.....++.+.+.+.+. ++..|..|+.+++.++..........+ ...+|.++..+.++++.||..+..++..+...-+.
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 2336788899999887 799999999999999765432212222 25899999999999999999999999988764322
Q ss_pred Hh----HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1454 QG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1454 ~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
.. -...+|.+++.+.+++..++..++.+|+.++...+....... ..+++.+.+++.+.++.||..|+++|.+++.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 21 156789999999999999999999999999976665433322 3588999999999999999999999998864
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-05 Score=111.47 Aligned_cols=545 Identities=11% Similarity=0.068 Sum_probs=271.8
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHHH
Q 000050 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWLL 1663 (2622)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L-~d~~~~vR~~a~~aL~~L~~~----~g~~~~~~ll~~Ll 1663 (2622)
+...|+.|.+.+..+-... + +...+ ...+. .+.++.+|..|+..|...+.. +.++....+-..++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p-~------~~~~~---~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC-P------ICVPC---GLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC-T------THHHH---HHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc-h------HHHHH---HHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 5677888888887765421 1 11111 12222 355788999888888887754 22222334444555
Q ss_pred HHhhhc------CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc--c-----
Q 000050 1664 DALKSD------NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--Q----- 1730 (2622)
Q Consensus 1664 ~~L~~~------~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~--~----- 1730 (2622)
+.+.+. .+..+|...++.++.++.....+.|+++++.+++.++. ++..++.++.+|..++..... .
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r 174 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQR 174 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHH
Confidence 555432 34567888888899988877667788888888887765 556688888888888754211 0
Q ss_pred -------hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhcc--CCCchHHHHHHHHHHHH
Q 000050 1731 -------FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI--FNDNWRIRQSSVELLGD 1801 (2622)
Q Consensus 1731 -------f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l--~d~~~rvR~~a~~ll~~ 1801 (2622)
+..+++.+++.+...+.+ .+..+... -+.. ... ...+-.++..+++++..
T Consensus 175 ~~~l~~~l~~~~~~I~~~~~~iL~~---------------~~~~~~~~-----~~~~-~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 175 RRDIQQTLTQNMERIFSFLLNTLQE---------------NVNKYQQV-----KTDT-SQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHH---------------HHHHHHHH-----TTCS-TTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcc-----cccc-cchhhhhhhHHHHHHHHHHHHH
Confidence 111111122222111110 00000000 0000 000 01123355555555554
Q ss_pred HHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC--hhhH
Q 000050 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT--PKTL 1879 (2622)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~--p~~l 1879 (2622)
++.-++ . ..+.+ ..+.++..++....+ ..+|.+|++++..++... +...
T Consensus 234 ~l~Wi~------------------~----~~i~~-----~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~ 284 (1204)
T 3a6p_A 234 YIDWVS------------------M----SHITA-----ENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDR 284 (1204)
T ss_dssp TTTTSC------------------H----HHHHT-----TTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHH
T ss_pred HHhccC------------------H----HHHHh-----ccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhH
Confidence 321100 0 00000 001244444444443 468999999999998744 3332
Q ss_pred HHHHH----HHHHHHHHHhc--C------CCHHHHHHHHHHHHHHHHHh-----------ccchhhhHHHHHhhhcCCCC
Q 000050 1880 KEIMP----VLMNTLISSLA--S------SSSERRQVAGRALGELVRKL-----------GERVLPSIIPILSRGLKDPS 1936 (2622)
Q Consensus 1880 ~~~l~----~ll~~L~~~L~--s------~~~~~R~~A~~~L~~lv~~~-----------~~~~l~~llp~L~~~L~d~~ 1936 (2622)
.+++. ..+..++.... + .+.+.+...++.+..+.... ....+..+++.+.....+++
T Consensus 285 ~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~ 364 (1204)
T 3a6p_A 285 KPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPS 364 (1204)
T ss_dssp GGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCcc
Confidence 22222 22333444431 1 11222222232222222110 11235678888888888887
Q ss_pred hhhHHhHHHHHHHHHHhh---ChhhHHHhHHhHHHHHHH---HhcCC-----------------cH-------HHHHHHH
Q 000050 1937 ASRRQGVCIGLSEVMASA---GKSQLLSFMDELIPTIRT---ALCDS-----------------IL-------EVRESAG 1986 (2622)
Q Consensus 1937 ~~vR~~a~~~L~~li~~~---~~~~l~~~l~~ll~~l~~---~L~d~-----------------d~-------~VR~~A~ 1986 (2622)
..+-..++.....+++.. ....+.+++..+++.+.. .+.-+ ++ +.|....
T Consensus 365 ~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~ 444 (1204)
T 3a6p_A 365 QFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQG 444 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHH
Confidence 777777775555454432 224466788888888733 22111 00 1233333
Q ss_pred HHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhh-ccc-cccchhhhhhcCCCchHHHHHHHHHHHHh
Q 000050 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVR-TTA-VLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2622)
Q Consensus 1987 ~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~-~~~-ilp~Lip~L~~~~~~~~~~~aL~sLa~~~ 2064 (2622)
..+..++...+...++.+.+.+...+.+.-.....-..+ ... ++. .....-+.... ......++.++.+..
T Consensus 445 d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~----~~~~~~~~~~~~~s~~~~~---~ea~~~~leav~~~~ 517 (1204)
T 3a6p_A 445 EVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCS----AVGTGEGSLCSVFSPSFVQ---WEAMTLFLESVITQM 517 (1204)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTCC---------------------CCSCSSSHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccccccc----ccccccccccCcCCHHHHH---HHHHHHHHHHHHHHH
Confidence 333333332222233333344433332210000000000 000 000 00000000000 000112333333321
Q ss_pred -CCChhhhHh-hhHHHHHHhc---CCCCHHHHHHHHHHHHHhhhccC--hhcHHHHHHHHHhhcCC------------CC
Q 000050 2065 -GPGLNFHLG-TILPALLSAM---GDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGD------------NQ 2125 (2622)
Q Consensus 2065 -g~~l~~~l~-~il~~Ll~~l---~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~d------------~~ 2125 (2622)
...-.++++ .+++.++..+ ..+++.+|...+.+++.+...+. ++.+..+++.++..+.+ .+
T Consensus 518 ~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 518 FRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred hcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 000012222 3455555553 34688899999999988876553 45688888888877654 23
Q ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCC---hhHHHHHHHHHHHHHhhcCc-----cchhhHHHHHH
Q 000050 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASVPK-----EVQPSYIKVIR 2197 (2622)
Q Consensus 2126 ~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d---~~V~~~a~~aL~~l~~~~~~-----~~l~~lv~~l~ 2197 (2622)
.++|.+|+.++..+++..+..+.+|++++...+-..+.... ..-+..-.+++..+....+. .++..++.++.
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999998888776333 44455566777766544332 22455666665
Q ss_pred HHHh
Q 000050 2198 DAIS 2201 (2622)
Q Consensus 2198 ~~l~ 2201 (2622)
+.+.
T Consensus 678 ~~w~ 681 (1204)
T 3a6p_A 678 SIWL 681 (1204)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 5544
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.2e-07 Score=111.23 Aligned_cols=249 Identities=15% Similarity=0.209 Sum_probs=163.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhH
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~ 1417 (2622)
+.+.|+..|.+. +|+.|.||+.||..+++..|...-+. +..|. ..|+..+..++- +.|.+|
T Consensus 175 fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~------------~~~N~---DLAvRLLCVLAL---DRFGDY 235 (800)
T 3oc3_A 175 FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQ------------IRVDS---KLFSKIYEILVT---DKFNDF 235 (800)
T ss_dssp TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CC------------CCCCT---THHHHHHHHHHH---BCCBBC
T ss_pred HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCcee------------ccccH---HHHHHHHHHHHh---cccccc
Confidence 556666776654 59999999999999998876533221 11111 344444444432 234454
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000050 1418 VIQMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2622)
Q Consensus 1418 v~~ilp~ll~~l~D~-~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2622)
+ +|. ..-||++|+++++.+ ..+++. -.++-.++..+..+.|.+|+|++..|..+ ..+...
T Consensus 236 V-----------SDqVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~ 296 (800)
T 3oc3_A 236 V-----------DDRTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED 296 (800)
T ss_dssp S-----------SSSCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC
T ss_pred c-----------cCeeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH
Confidence 3 343 357999999999999 888877 46666777777889999999999999877 222222
Q ss_pred hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhh
Q 000050 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~ 1576 (2622)
++.+++.+...|+|.+.+||..|+.+|..++ ....+..++..+.+.+.+-++- .++...
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDL------------------SASTgS 355 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELI------------------SVSKTS 355 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSC------------------CTTHHH
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhccc------------------chhhHH
Confidence 8999999999999999999999999999998 3356777888877776543210 011111
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000050 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2622)
Q Consensus 1577 i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~ 1656 (2622)
++ +.++.++..-.. .... +.++|.|...+.++...||.++.+++.++. ..
T Consensus 356 VM-------------------dLLAkL~s~p~~-a~~d---p~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~~ 405 (800)
T 3oc3_A 356 NL-------------------SLLTKIYRENPE-LSIP---PERLKDIFPCFTSPVPEVRTSILNMVKNLS-------EE 405 (800)
T ss_dssp HH-------------------HHHHHHHHHCTT-CCCC---SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------CH
T ss_pred HH-------------------HHHHHHHcCCcc-cccC---hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------hh
Confidence 22 223333332111 0111 268888888999999999999999887665 23
Q ss_pred hhHHHHHHHhhhcCChHHH
Q 000050 1657 DLVSWLLDALKSDNSNVER 1675 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r 1675 (2622)
.++..+++.+-=+....++
T Consensus 406 ~~LRLIFQNILLE~neeIl 424 (800)
T 3oc3_A 406 SIDFLVAEVVLIEEKDEIR 424 (800)
T ss_dssp HHHHHHHHHHHHCSCHHHH
T ss_pred hHHHHHHHHHHhCCcHHHH
Confidence 4555555555444434333
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.7e-06 Score=113.93 Aligned_cols=692 Identities=11% Similarity=0.063 Sum_probs=351.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHHhccc--hhh
Q 000050 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG--ELVRKLGER--VLP 1922 (2622)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~--~lv~~~~~~--~l~ 1922 (2622)
..+...-...-..||..|-.++.......+.....++|.+++.+-..+.+.+.+.-..|..+|. .+...+..+ ..+
T Consensus 136 ~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~~~ 215 (997)
T 1vsy_5 136 VDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKDIG 215 (997)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHHHH
Confidence 3333333445678999999999999998888888888888888877666656555555666554 444444333 567
Q ss_pred hHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh-------------------------------------hhHHHhHHh
Q 000050 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-------------------------------------SQLLSFMDE 1965 (2622)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~-------------------------------------~~l~~~l~~ 1965 (2622)
.+++.+.++...+.+++..-+-.....++..... ......+..
T Consensus 216 ~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~~~ 295 (997)
T 1vsy_5 216 RLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLLVD 295 (997)
T ss_dssp HHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888876655666554333222333321110 001111123
Q ss_pred HHHHHHHHh-cCCc--HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCc--hhHHHHHHHHHHhh-h--c----
Q 000050 1966 LIPTIRTAL-CDSI--LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSV-R--T---- 2033 (2622)
Q Consensus 1966 ll~~l~~~L-~d~d--~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~~L~~il~~-~--~---- 2033 (2622)
+...+.... .+.+ ......++..+-.+........-.+++..+++.+.++.. +..++.++..++.. + +
T Consensus 296 L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~~~~~ 375 (997)
T 1vsy_5 296 LQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLSDYEY 375 (997)
T ss_dssp HHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 333333333 1223 444444444433333222222234556666666665543 35566555554432 0 0
Q ss_pred --cccccc-hhh-hhh--cCCCchHHHHHHHHHHHHhCCC-hh--h-hHhhhH-HHHHHhcC------CCCHHHHHHHHH
Q 000050 2034 --TAVLPH-ILP-KLV--HLPLSAFNAHALGALAEVAGPG-LN--F-HLGTIL-PALLSAMG------DDDMDVQSLAKE 2096 (2622)
Q Consensus 2034 --~~ilp~-Lip-~L~--~~~~~~~~~~aL~sLa~~~g~~-l~--~-~l~~il-~~Ll~~l~------~~~~~vr~~a~~ 2096 (2622)
+.+... ..| .+. ..+...+...-...+...-.+. +. + |.+-.. |.-+.... +-++..+.
T Consensus 376 d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~---- 451 (997)
T 1vsy_5 376 DITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKLNLRENELE---- 451 (997)
T ss_dssp CGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCCCCCHHHHH----
T ss_pred cHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCCCCCHHHHH----
Confidence 000000 000 000 0000011111111111100000 00 0 100000 00000000 11222211
Q ss_pred HHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh----hccccccccHHHHHHHHHHHhcCCChhHHHH
Q 000050 2097 AAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK----NSKLYLVDEAPNMISTLIVLLSDSDSTTVAA 2172 (2622)
Q Consensus 2097 al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~----~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~ 2172 (2622)
++..+...++.+.+..++..+.+- ++++..-+..-+..+..+++ +.+.. .++.+.+.+-.++.|.|..-...
T Consensus 452 i~~~f~~~~~~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~~~---~l~~l~~~~e~L~~~~dk~~qr~ 527 (997)
T 1vsy_5 452 VLKTAGHLLTREFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFCEL---NMSDLFELCESYYNKDDKASMIM 527 (997)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTCCC---CGGGHHHHHHHTCCSSCHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccchh---hHHHHHHHHHHHhccccHHHHHH
Confidence 223333334566677777766543 22222224445555555553 33332 34556666666778888888999
Q ss_pred HHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHc-cCCHHHHHHHHH
Q 000050 2173 AWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI-SGSAELREQAAL 2251 (2622)
Q Consensus 2173 a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~-~~~~~~r~~aa~ 2251 (2622)
|.+.++.++.....-..... .+.-.-+.|.+...+. +-+++....-..
T Consensus 528 aaEi~aGll~gsK~w~~~~~-------------------------------~~~w~~l~p~l~~~l~~~lt~et~~~W~~ 576 (997)
T 1vsy_5 528 SVEIVAGLVCGSKFMSVSDL-------------------------------DKRDTFIENFLAKCLDYELNHDAFEIWST 576 (997)
T ss_dssp HHHHHHHHSSCCSSCCTTTH-------------------------------HHHHHHHHHHHHHHHSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHH-------------------------------HHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 99999998765432110000 0111235666667777 356776666677
Q ss_pred HHHHHHhhcChhhhhhhhhhhhHHHHHh-hc-CCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHH
Q 000050 2252 GLGELIEVTSEQSLKEFVIPITGPLIRI-IG-DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329 (2622)
Q Consensus 2252 ~L~~l~~~~~~~~l~p~v~~i~~~Li~~-l~-~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~v 2329 (2622)
|+..+.....+..+.+.++-++. ++. +. ...+.-....-+..|..++...+-.+.. ...+...++ ++++...|
T Consensus 577 ~i~~~~~~~DprR~~~L~e~l~~--~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~V 651 (997)
T 1vsy_5 577 LAWWLPAVVDLRRSKTFFCHFIN--ADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQV 651 (997)
T ss_dssp HHHHHHHHSCGGGCHHHHHHHTC--CCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHH
T ss_pred HHHHHhcCCChhhhHHHHHHHHH--hhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHH
Confidence 77777777665444433332200 000 00 0001111122344444444444433332 344555454 78889999
Q ss_pred HHHHHHHHHHHHhcc--c---ChhhH-------------------------HHHHHHhhhc---------CCH----h--
Q 000050 2330 RSSAALALGKLSALS--T---RVDPL-------------------------VGDLLSSLQV---------SDA----G-- 2364 (2622)
Q Consensus 2330 R~~Aa~aLg~L~~~~--~---~~~~l-------------------------l~~Ll~~l~~---------~d~----~-- 2364 (2622)
|...+..|..+.... | .++.+ +..+.+.+.. +.. .
T Consensus 652 Re~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~ 731 (997)
T 1vsy_5 652 RQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYF 731 (997)
T ss_dssp HHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHH
Confidence 999999998885433 2 11111 2222222210 000 0
Q ss_pred -HHHHHHHHHHHHHhhcCCCCChHHHHH-HHHHHHHhhcCCCH-HHHHH-HHHHHHHHHhh-cCchHHHHHHHHHHhhcC
Q 000050 2365 -IREAILTALKGVLKHAGKSVSSAVKIR-VYSVLKDLVYHDDD-HVRVS-AASILGIMSQC-MEDGQLADLLQELLNLAS 2439 (2622)
Q Consensus 2365 -vr~~~l~AL~~vi~~~g~~~~~~~~~~-i~~~L~~~l~~~~~-~vr~~-aa~~Lg~L~~~-~~~~~~~~~l~~ll~~~~ 2439 (2622)
.-.+++.-|...+.........++... +++.+..+.+..++ +.... +..++..++.. .+++.+..++..+.....
T Consensus 732 ~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~ 811 (997)
T 1vsy_5 732 YRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNV 811 (997)
T ss_dssp HHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTT
T ss_pred HHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 011222222222211100001233333 44444444444443 45555 56677777544 344455556665544333
Q ss_pred -CCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCC-hhHHHhHHHHHHHHHhhhhhcCCCCchhhHhH
Q 000050 2440 -SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517 (2622)
Q Consensus 2440 -~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~ 2517 (2622)
+++| .|......+..+.-.+- -++...-...+.+.+.+.+.|.. .+||+.|..+++.++...... ....++
T Consensus 812 ~s~sW-~R~~~L~~lq~~~f~n~-f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~-----~~~~~l 884 (997)
T 1vsy_5 812 ALSSN-QTKLQLAFIQHFLSAEL-LQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE-----QPLLSL 884 (997)
T ss_dssp TSCSS-SHHHHHHHHHHHHHHHT-TTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH-----HHHHHH
T ss_pred cCCcH-HHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch-----hhHHHH
Confidence 5789 78644333333333222 12233344678899999999999 999999999999988653110 123355
Q ss_pred HHHHHhhcCC------------CCHHHHHHHHHHHHHHHhhCchhh--hhhHhhHHHHHHhhhcCCcchhhchhHHHHHH
Q 000050 2518 LASVVSALHD------------DSSEVRRRALSALKSVAKANPSAI--MVHVALFGPALAECLKDGSTPVRLAAERCAVH 2583 (2622)
Q Consensus 2518 l~~l~~~l~d------------~s~dvr~~a~~~l~~~a~~~~~~v--~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~ 2583 (2622)
+..+...... .+.-.|-.|+.+|+.+..-.|..+ .++++.++..|-.-..+ ..||+..+.+|+..
T Consensus 885 i~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~-~~~i~~tvk~tlse 963 (997)
T 1vsy_5 885 IERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART-SGMTGNAAKNTISE 963 (997)
T ss_dssp HHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS-CSSHHHHTHHHHHH
T ss_pred HHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC-CCchHHHHHHHHHH
Confidence 5555554421 111467788899999999999887 67999999888777778 56799999999999
Q ss_pred Hhccccc
Q 000050 2584 AFQLTRG 2590 (2622)
Q Consensus 2584 ~~~~~~~ 2590 (2622)
--+.+++
T Consensus 964 FkrTH~D 970 (997)
T 1vsy_5 964 FKKVRAD 970 (997)
T ss_dssp HHHHTST
T ss_pred HHhccch
Confidence 8888874
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.5e-06 Score=107.07 Aligned_cols=339 Identities=12% Similarity=0.067 Sum_probs=205.8
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCC------------CHHHHHHHHHHHHHHh
Q 000050 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT------------HPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~------------~~~VR~aA~~aL~~l~ 1527 (2622)
+|.++..+.+.+.. ..+..|.++...+|.-....=...+|.|+++|++. ++++|..|.+||.+++
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 34444555443332 23445555655555311111256788888888753 2799999999999999
Q ss_pred hhcCChh--------------HHhHHHHHHhhcCCCC--hh-----HH--------HHHHHHHhccccccCChh-hhhhH
Q 000050 1528 SVIKNPE--------------IASLVPTLLMGLTDPN--DH-----TK--------YSLDILLQTTFVNTVDAP-SLALL 1577 (2622)
Q Consensus 1528 ~~~~~~~--------------i~~ilp~Ll~~l~d~~--~~-----~r--------~al~~L~~~~~~~~~~~~-~l~~i 1577 (2622)
..-++.. +....+.+++.+..+. .. ++ .|+.+|.+..+....... .-...
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~ 190 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG 190 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 7654321 1222355555454331 00 21 355555543222111000 01234
Q ss_pred HHHHHhhhc-----------CCCHHHHHHHHHHHHHhhhhcCCCCcccch---HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1578 VPIVHRGLR-----------ERSAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1578 ~p~L~~~l~-----------d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~---l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
++.|.+.+. ..+..++..|+.+|.+++.. +. ..... ....+|.|..+|.+++++++..|+.+|
T Consensus 191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~--~~-~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG--DV-ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT--CH-HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC--Cc-ccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555555552 12467899999999999863 21 11212 245689999999999999999999999
Q ss_pred HHHHhhhCCC---C--chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhc---hhHH--HhHhHHHHHhccCCCh---
Q 000050 1644 GSLIRGMGEE---N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG---TVYF--EHILPDIIRNCSHQRA--- 1710 (2622)
Q Consensus 1644 ~~L~~~~g~~---~--~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g---~~~l--~~llp~l~~~l~~~~~--- 1710 (2622)
+.++..-+++ . -...+|.|++.|....+...+..++.++..+..... .... ...+|.+++.+.+.+.
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~ 347 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence 9997531111 1 135678888876554445567777777777765321 1121 4578888888876544
Q ss_pred -hhHHHHHHHHHHhhhh--hCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh--ch-hh-hhHHHHh
Q 000050 1711 -SVRDGYLTLFKYLPRS--LGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT--TS-LP-LLLPAVE 1781 (2622)
Q Consensus 1711 -~vR~~al~~l~~L~~~--~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~--~~-i~-~llp~l~ 1781 (2622)
.+++.+..++..++.. .+......+ ...+|.++..|.+.+..+++.|..++..+...-.. .. ++ -.+|.|.
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 4888888899888863 122222222 23789999999999999999999999887632111 11 12 2688899
Q ss_pred hccCCCchHHHHHHHHHHHHHHH
Q 000050 1782 DGIFNDNWRIRQSSVELLGDLLF 1804 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~ll~ 1804 (2622)
+.+.+.+.++|..++..+..++.
T Consensus 428 ~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 428 NLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHc
Confidence 99988999999999999988863
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-06 Score=100.44 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=132.3
Q ss_pred CCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhcc---cchhH-HHH
Q 000050 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGR---LFEPY-VIQ 1420 (2622)
Q Consensus 1349 ~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l----~~~~~~~~R~~al~al~~La~~~~~---~~~~~-v~~ 1420 (2622)
+.|+..|..|...|...+...+...+ ..++.+.+++ .++ |+.+-..++..+..+...+++ .+.+| ...
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 44788888888777776654322222 2233344443 355 888888899988888776653 36666 478
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
++|.++..+||+++.||+.+..++..+....++ ..+++.+.+++.+++|++|.+++..++.+.....-.. ...
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~ 205 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKS 205 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGG
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccc
Confidence 999999999999999999999999888765544 4577888899999999999999999999886422221 335
Q ss_pred H---HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh
Q 000050 1501 V---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2622)
Q Consensus 1501 v---p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2622)
+ |.+.+++.|++..||++|..|+..+-...++.
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 6 88899999999999999999999988877653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.7e-07 Score=108.14 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=143.9
Q ss_pred HhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHH
Q 000050 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2622)
Q Consensus 1780 l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~ 1859 (2622)
+.+.+.+++|+.|..+++-+..++...+... .+++ ....+ ......+.....|.|..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~----------~~~~~-----~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDD----------NIQIY-----WRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------CCT-----TSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchh----------HHHHH-----HHHHHHHHHHhccchHH
Confidence 6678899999999999998888775422110 0000 00001 11222333456899999
Q ss_pred HHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc
Q 000050 1860 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2622)
Q Consensus 1860 VR~aA~~~l~~l~~~~p------~~l~~~l~~ll~~L~~~-L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L 1932 (2622)
|...+++++..++...+ ..+..++..+++.++.. +.+....+|..+..++..++...+. ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999987543 23445677888888875 7899999999999999888865432 345677788889
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChhh--HHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 000050 1933 KDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1933 ~d~~~~vR~~a~~~L~~li~~~~~~~--l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
.+.+|.+|.+++.+|..++..+|... ..+.++.+++.+..++.|.|+.||++|..++..++..+|.
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999877543 3456778888889999999999999999999999998885
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.3e-06 Score=109.07 Aligned_cols=309 Identities=11% Similarity=0.054 Sum_probs=199.2
Q ss_pred HhhHHHHHhhccCC------------ChhhHHHHHHHHHHHHhhCchhhhhh--------h---hhhHHHHhhhhcCCC-
Q 000050 1457 KLVLPSLLKGLEDK------------AWRTKQSSVQLLGAMAYCAPQQLSQC--------L---PKIVPKLTEVLTDTH- 1512 (2622)
Q Consensus 1457 ~~ilp~Ll~~L~~~------------~w~~r~~a~~~L~~la~~~p~~l~~~--------L---~~ivp~L~~~L~D~~- 1512 (2622)
...+|.+++.|... +...+..|.++|.+++.+.|++.... | +...+.+++++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 46788888877643 25788899999999999877654321 1 122244444444321
Q ss_pred -H-----HHHH-------HHHHHHHHHhhhcCChh-H--HhHHHHHHhhcC----------CC-ChhH-HHHHHHHHhcc
Q 000050 1513 -P-----KVQS-------AGQTALQQVGSVIKNPE-I--ASLVPTLLMGLT----------DP-NDHT-KYSLDILLQTT 1564 (2622)
Q Consensus 1513 -~-----~VR~-------aA~~aL~~l~~~~~~~~-i--~~ilp~Ll~~l~----------d~-~~~~-r~al~~L~~~~ 1564 (2622)
. .|++ .|+++|+.++..-.+.. + ...++.|...+. +. +..+ +.|..+|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 1 1666 88999998875422221 1 345666666662 11 1222 34555554322
Q ss_pred ccccCChhh---hhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccch--HhhhHHHHHHH-hcCCCHHHHHH
Q 000050 1565 FVNTVDAPS---LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKV-LVDPIPEVRSV 1638 (2622)
Q Consensus 1565 ~~~~~~~~~---l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~-L~d~~~~vR~~ 1638 (2622)
+........ ....+|.|.+.+.+.+.+++..|+.+|.+++.. .+ ...... -...+|.|.++ +...++.+++.
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~-~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-AD-VNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CC-HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CC-HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 221101111 234689999999999999999999999998752 11 111111 12467888886 45678899999
Q ss_pred HHHHHHHHHhhhCC---CC--chhhHHHHHHHhhhcCCh---HHHHHHHHHHHHHHHH--hchh---HH--HhHhHHHHH
Q 000050 1639 AARAIGSLIRGMGE---EN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA--LGTV---YF--EHILPDIIR 1703 (2622)
Q Consensus 1639 a~~aL~~L~~~~g~---~~--~~~ll~~Ll~~L~~~~~~---~~r~~a~~~L~~i~~~--~g~~---~l--~~llp~l~~ 1703 (2622)
++.+|+.++....+ .. ....+|.|.+.|.+.... ..+..++.+|..+... .+.+ .+ ...+|.+++
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 99999999873321 11 356788888888765432 3566677777777652 1222 11 356899999
Q ss_pred hccCCChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000050 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2622)
Q Consensus 1704 ~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~ 1768 (2622)
.+.+.+..+++.++.++..++.... +...++ ...+|++...+...++.+++.|..++..+..+-
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSSCH-HHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCChHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999974322 222333 247999999999999999999999999887543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-06 Score=100.51 Aligned_cols=192 Identities=16% Similarity=0.141 Sum_probs=143.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
...|.+..++.++++.+|..|..++..++..-+.. .+ ...+|.+++.|.++++.++..++.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 44567788889999999999999999987533222 11 367899999999999999999999999999765543222
Q ss_pred hh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhh
Q 000050 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2622)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2622)
.. ...+|.++.+++++++.||..|+++|+.++..- +... ..+. -
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~---------------------~~~~------------~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI---------------------QAVI------------D 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH---------------------HHHH------------H
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHH---------------------HHHH------------H
Confidence 22 468899999999999999999999999998532 1110 0000 0
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc-hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000050 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~ 1648 (2622)
...+|.|.+.+.+.+.+++..++.++++++.. .+..... .-...++.+.+++.++++.+|..|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 13567777778878889999999999999863 1111111 123578999999999999999999999998753
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-06 Score=105.39 Aligned_cols=211 Identities=15% Similarity=0.148 Sum_probs=159.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc-------chHHHHHHHHHHHhcC-------C--ChHHHHHHHHHHHH
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-------EAPTLVSRLLDQLMKS-------D--KYGERRGAAFGLAG 1364 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~-------~~~~~i~~Ll~~L~~~-------~--~~~~r~~Aa~~L~~ 1364 (2622)
+++.|..-|-++..++|..|+-+|..+++..+. ...++.-.++..+.-+ + -..+|..++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 889999999999999999999999999877642 1124455555555421 1 23789999999999
Q ss_pred HHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000050 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2622)
Q Consensus 1365 l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2622)
+ ..++.+ ..++..+...+... .|.+|++++.++.++.+.+ .. +..++|.++.+++|.+++||..|+.++
T Consensus 255 L-~hLp~e----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL~DLL----~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP----NDIIEQLVGFLDSG-DWQVQFSGLIALGYLKEFV----ED-KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHTGGGC----CC-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh----HHHHHHHHhhcCCC-CeeehhhhHHHHHHHHHHH----HH-HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 777766 24555555555555 7999999999999982222 22 788899999999999999999999998
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhccC-CChhhHHH-HHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHH
Q 000050 1445 RAMMSQLSAQGVKLVLPSLLKGLED-KAWRTKQS-SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2622)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-~~w~~r~~-a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~a 1522 (2622)
.-++ .+..+..++..+++.|.+ ++-..-.+ .+.+|..+....+. ....|.++|.|+..+.++-+.||.++.++
T Consensus 324 iPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 324 CHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp TTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred hhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 8776 455678888888887764 33333344 45567777765432 22346899999999999999999999999
Q ss_pred HHHHh
Q 000050 1523 LQQVG 1527 (2622)
Q Consensus 1523 L~~l~ 1527 (2622)
|..+.
T Consensus 399 L~tfL 403 (800)
T 3oc3_A 399 VKNLS 403 (800)
T ss_dssp TTTCC
T ss_pred HHHHH
Confidence 98776
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=100.84 Aligned_cols=186 Identities=19% Similarity=0.157 Sum_probs=139.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhhCc--cchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH-
Q 000050 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV- 1418 (2622)
Q Consensus 1342 Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v- 1418 (2622)
.+..|..+++...|..|+.+|..++.+-.. ..+...+.++.+.+.+.+. ++..|..|+.+++.++...+......+
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 344444566678888888888888753221 1222336788899999887 799999999999998753332111111
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
...+|.++..+.++++.+|..|..++..+...-+... -...+|.+++.+.+++..++..++.+|+.++...+....
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 174 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 2478999999999999999999999999875433221 145789999999999999999999999999986554432
Q ss_pred hh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1495 ~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
.. -...++.|.+++.+.++.||+.|+++|..+++
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22 24688999999999999999999999999874
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=9.8e-06 Score=95.20 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=143.5
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCC
Q 000050 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857 (2622)
Q Consensus 1778 p~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~ 1857 (2622)
+.+...+++.+|+.|..+++.+...+...+ ..+...+ +-++.-+.....|.+
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-----------------------~~~~~~l-----Dll~kw~~lr~~d~N 100 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-----------------------RSLLSNS-----DLLLKWCTLRFFETN 100 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-----------------------HHHHHTH-----HHHHHHHHHHTTSCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-----------------------HHHHHHH-----HHHHHHHHHHHhCCC
Confidence 455667788999999999988887653210 1122211 223333333457899
Q ss_pred HHHHHHHHHHHHHHHhhChh---hHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC
Q 000050 1858 LSVRQAALHVWKTIVANTPK---TLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933 (2622)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~p~---~l~~~-l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~ 1933 (2622)
..|-..+++++..++....+ .+.++ ...++|.++..++++...+|..+...+..+....++ ..+++.+.++++
T Consensus 101 ~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~k 177 (266)
T 2of3_A 101 PAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALK 177 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHc
Confidence 99999999999998764432 13333 578899999999999999999999998877765433 347777888999
Q ss_pred CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHH---HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000050 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI---PTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll---~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2622)
+.++.+|.+++..++.++..+|... ...+ +.+..++.|+|..||++|..++..++...|.....
T Consensus 178 sKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 178 SKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999988651 3356 88899999999999999999999999999986443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.1e-06 Score=102.53 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=137.2
Q ss_pred HHhhccCCChhhHHHHHHHHHHHHhhCchh-----hhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-----
Q 000050 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 1532 (2622)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-----l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----- 1532 (2622)
+-+.|.+++|..|..+++-+..+....+.. ....+..+.+.+.+.+.|+|..|...++.++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567899999999999999998877654432 2223556667778889999999999999999999876542
Q ss_pred ----hhHHhHHHHHHhh-cCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1533 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1533 ----~~i~~ilp~Ll~~-l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
..+..++|.|+.. +.|+...++ .+++.+.. ++.... ....+++.+..++...++.+|..+..++..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~--~~~~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILS--LCGLDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH--HHHTSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH--HHHhcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2346678888765 788887776 34554432 111111 2234678888899999999999999999998877
Q ss_pred cCCC-CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000050 1607 VTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1607 ~~~~-~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
++.. -...+.++.+++.+..++.|.++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 6542 1234567778888999999999999999999999999999864
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00012 Score=77.18 Aligned_cols=215 Identities=20% Similarity=0.175 Sum_probs=156.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhc
Q 000050 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2622)
Q Consensus 1299 ~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~ 1378 (2622)
+.+++.++..|.|.-+.||..+...+..+.....+-...++..++-.+.+++...--...+.+++.++...+ +.+. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-e~v~--~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-ELVK--S 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-HHHH--H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-HHHH--h
Confidence 457888999999999999999988888887777776677788888777777655555667777777775433 3333 5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2622)
++|.+.....-. +++.|...-.+++.++..-|.. ...++.-++..+.+++..=|-++..-+..+..+ ....+..
T Consensus 108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHHHGG
T ss_pred hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-CccccCc
Confidence 677777666555 7888888888888888776643 344555566677788866666665555444332 2234577
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2622)
.+|.++..|.+++--+|..+++.|+.++...|+ +..++...++-++|+...|......+|+.+.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 888888888888888888899999988887665 3555666667788888888888888888775
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00015 Score=80.37 Aligned_cols=219 Identities=12% Similarity=0.064 Sum_probs=161.3
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000050 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2622)
Q Consensus 1737 ~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~----~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~ 1812 (2622)
..+..+...+.|+++.++..++.++..+++.. ....++.++|.+.+.+.+++.|+...|+++++.++...+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp----- 107 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP----- 107 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-----
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-----
Confidence 36677888889999999999999999999874 334677899999999999999999999999999984322
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHH
Q 000050 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2622)
Q Consensus 1813 ~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~ 1892 (2622)
++++.+..+..++.....+.+...+..|.+.++.+ . + ....+.++..+..
T Consensus 108 ------------------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k--v---~~~~~~V~~~l~s 157 (265)
T 3b2a_A 108 ------------------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q--P---LEDSKLVRTYINE 157 (265)
T ss_dssp ------------------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C--B---SCCCHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C--c---ccchHHHHHHHHH
Confidence 11122334444554455688889999999999988 2 1 1234567777888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHH
Q 000050 1893 SLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2622)
Q Consensus 1893 ~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2622)
.+.|.+..++.++.+++.++....++. .+..++.-+...++++|+.++.-++..+.+++..--.+...+-+..+...+.
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~ 237 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD 237 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH
Confidence 889999999999999999998877654 5667777777788889999999999999887654322333333344444444
Q ss_pred HHh-cCCcHHHHHHHHHHHH
Q 000050 1972 TAL-CDSILEVRESAGLAFS 1990 (2622)
Q Consensus 1972 ~~L-~d~d~~VR~~A~~al~ 1990 (2622)
... -...|.+|..|...-.
T Consensus 238 ~l~~~~~~~~~~~ka~~v~~ 257 (265)
T 3b2a_A 238 GLVYREGAPIIRLKAKKVSD 257 (265)
T ss_dssp HGGGCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHHHH
Confidence 443 4567888887755433
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.8e-05 Score=90.42 Aligned_cols=177 Identities=17% Similarity=0.134 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhc
Q 000050 1394 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGL 1467 (2622)
Q Consensus 1394 ~~R~~al~al~~La~~~~~~~~~~v-~~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L 1467 (2622)
..|..|+..|..+++.... -..++ ...+|.++. ++.++++.||..|..+++.++..-+.. .+ ...+|.|+..|
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 4677777777777764431 11122 256889999 999999999999999999998754332 12 36789999988
Q ss_pred cC-CChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhh
Q 000050 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2622)
Q Consensus 1468 ~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~ 1545 (2622)
.+ ++-.++..|+.+|+.++.+.+....... ...+|.|..+|++.++.||..|+++|..++..- ++.. ..+.+
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~---~~vv~- 207 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHK---GTLCS- 207 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGH---HHHHH-
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHH---HHHHH-
Confidence 85 4678899999999999987665433222 368899999999999999999999999998652 2110 00000
Q ss_pred cCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1546 LTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1546 l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
..++|.|...+.+.+..++..++.+++++...
T Consensus 208 -----------------------------~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 -----------------------------MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp -----------------------------TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred -----------------------------cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 12445555566666667777777777777653
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0001 Score=92.52 Aligned_cols=257 Identities=11% Similarity=0.036 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhh--hhhHHHHhhhhc-----------CCCHHHHHHHHHHHHHHhhhcCChhHHhHH
Q 000050 1473 RTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLT-----------DTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2622)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L--~~ivp~L~~~L~-----------D~~~~VR~aA~~aL~~l~~~~~~~~i~~il 1539 (2622)
.....|+.+|+.++.. + .....+ ...++.|..++. ..++.+|..|+++|..++..- +..
T Consensus 47 ~~~~~A~~aL~nls~d-~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~--~~~---- 118 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-E-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VAN---- 118 (354)
T ss_dssp GTHHHHHHHHHHHHTS-H-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC--HHH----
T ss_pred HHHHHHHHHHHHHcCC-H-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC--HHH----
Confidence 3455678888888875 2 222221 245666776663 124789999999999997531 110
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccch--H
Q 000050 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--I 1617 (2622)
Q Consensus 1540 p~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~--l 1617 (2622)
+..+. ....++|.|.+.+.+.+.+++..|+.++.+++.. .+ .+.... -
T Consensus 119 --------------k~~i~--------------~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~-~~~k~~i~~ 168 (354)
T 3nmw_A 119 --------------KATLC--------------SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-AD-VNSKKTLRE 168 (354)
T ss_dssp --------------HHHHH--------------HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CC-HHHHHHHHH
T ss_pred --------------HHHHH--------------HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CC-HHHHHHHHH
Confidence 10000 0112467777777777888999999999998753 11 111111 1
Q ss_pred hhhHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhhCC---CC--chhhHHHHHHHhhhcCCh---HHHHHHHHHHHHHHHH
Q 000050 1618 GLLLPEVKKV-LVDPIPEVRSVAARAIGSLIRGMGE---EN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1618 ~~ll~~L~~~-L~d~~~~vR~~a~~aL~~L~~~~g~---~~--~~~ll~~Ll~~L~~~~~~---~~r~~a~~~L~~i~~~ 1688 (2622)
...+|.|.++ +...++.+++.|+.+|..++....+ .. ....+|.|.+.+.+..+. ..+..++.+|..+...
T Consensus 169 ~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 169 VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 2467888886 4567889999999999999873221 11 356788898888765432 3566677777776642
Q ss_pred --hchh---HH--HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHH
Q 000050 1689 --LGTV---YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALG 1759 (2622)
Q Consensus 1689 --~g~~---~l--~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~ 1759 (2622)
.+.+ .+ ...+|.+++.+.+.+..+++.+..++..++..... -...+ ...+|++...+...++.+|+.|..
T Consensus 249 ~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~ 327 (354)
T 3nmw_A 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327 (354)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 1222 12 34689999999999999999999999999743222 22233 237999999999999999999999
Q ss_pred HHHHHHHHh
Q 000050 1760 AGHVLVEHY 1768 (2622)
Q Consensus 1760 al~~lv~~~ 1768 (2622)
++..+...-
T Consensus 328 aL~nL~~~~ 336 (354)
T 3nmw_A 328 ALRNLMANR 336 (354)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999887653
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.03 E-value=9.6e-05 Score=92.68 Aligned_cols=218 Identities=16% Similarity=0.111 Sum_probs=155.2
Q ss_pred CHHHHHHHHhhhHhhHhhhc---cc---hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---ccchhhhcHHHHH
Q 000050 1313 SEAVQRAVSSCLSPLMQSMQ---DE---APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATL 1383 (2622)
Q Consensus 1313 ~~~Vq~~a~~~L~~lv~~~~---~~---~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L 1383 (2622)
++++|..++.+|..+...-. .. ....++.|+..|. +.+...+..|+.+|..++.+-. ...+.....++.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 46789999999887763221 11 1345777777765 4556889999999999986411 1222234677888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHhh--cHHh
Q 000050 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQL--SAQG 1455 (2622)
Q Consensus 1384 ~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~----~VR~aa~~al~~i~~~l--~~~~ 1455 (2622)
.+.+....+...++.|+.++..++......-...+ ...+|.+...+.++++ .+++.|..++..+...+ .+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88653333688888899999998864322112222 3689999999986654 58888888888887521 2221
Q ss_pred ---H--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1456 ---v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
+ ...+|.+++.|.+.+..++..|+.+|..++...+++...-. ...+|.|.+++.+.++.+|+.|+++|..+...
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1 34689999999999999999999999999976555432222 46789999999999999999999999999976
Q ss_pred cC
Q 000050 1530 IK 1531 (2622)
Q Consensus 1530 ~~ 1531 (2622)
-+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 43
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0025 Score=70.86 Aligned_cols=218 Identities=11% Similarity=0.078 Sum_probs=158.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--hcHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE-PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ--LSAQ 1454 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~-~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~--l~~~ 1454 (2622)
+.+..+...+.++ |+.++..++++++.+....+..+. ..+..++|.++..+.+++..|--.|..|++.+... +++.
T Consensus 33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4566677778776 899999999999999998764443 45778999999999999999999999999999985 5667
Q ss_pred hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChh
Q 000050 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2622)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2622)
++..+...+.+.+.+++--.+..+.+.+|.+ .+ ....+.++..+..++...+++|+.+|..++..++..-.+++
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 8899999998888888877788888888887 11 22246778888888888899999999999999987655443
Q ss_pred H-HhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcc
Q 000050 1535 I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2622)
Q Consensus 1535 i-~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2622)
+ ..++..+ ...++..++.++..|.+.+..+.+. .-++.+
T Consensus 186 i~~~I~~eI---------------------------------------~elL~~eD~~l~e~aLd~Le~ils~-pi~~~~ 225 (265)
T 3b2a_A 186 HLTLILDEI---------------------------------------PSLLQNDNEFIVELALDVLEKALSF-PLLENV 225 (265)
T ss_dssp CGGGTTTTH---------------------------------------HHHHTCSCHHHHHHHHHHHHHHTTS-CCCSCC
T ss_pred HHHHHHHHH---------------------------------------HHHHcCCCHHHHHHHHHHHHHHHcC-cccHhH
Confidence 2 2222222 2234445667777777777777654 222344
Q ss_pred cchHhhhHHHHHHHh-cCCCHHHHHHHHHH
Q 000050 1614 IPYIGLLLPEVKKVL-VDPIPEVRSVAARA 1642 (2622)
Q Consensus 1614 ~~~l~~ll~~L~~~L-~d~~~~vR~~a~~a 1642 (2622)
.+-+..+......+. -...|.+|..|-..
T Consensus 226 ~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 226 KIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 344444444444444 45667777776443
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=7.4e-05 Score=91.08 Aligned_cols=174 Identities=18% Similarity=0.140 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhhhCcc-chhhhcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHc
Q 000050 1354 ERRGAAFGLAGVVKGFGIS-SLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAF 1429 (2622)
Q Consensus 1354 ~r~~Aa~~L~~l~~~lg~~-~l~~~~i~~~L~~-~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l 1429 (2622)
.|..|...|..++...... .+.....++.+.. ++.+. ++..|..|+.+++.++..-+. ....+. ..+|.|+.++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHH
Confidence 4555555555555433211 1112245666667 78776 799999999999999865332 223333 5889999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHH
Q 000050 1430 S-DQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPK 1503 (2622)
Q Consensus 1430 ~-D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~ 1503 (2622)
. +++..+|..|..++..++...++. .+ ...+|.++..|.+++..++..++.+|+.++.+.++...... ..++|.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 7 568999999999999987654432 22 35789999999999999999999999999987665433222 468899
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1504 LTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
|+.+|.++++.||+.|+.+|+.++..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999875
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00016 Score=89.35 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh
Q 000050 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2622)
Q Consensus 1883 l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~ 1962 (2622)
...++..+++.+.+++...|....-.+..+.+. .+.+. -+...+.+-++++++-+|..|+.+++.+.. + +.
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~----~m 136 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---S----TM 136 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---T----TT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---H----HH
Confidence 346677788899999999999988888776654 44454 677888888999999999999999998742 2 23
Q ss_pred HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCc--hhHHHHHHHHHHhhhccccccch
Q 000050 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHI 2040 (2622)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~~L~~il~~~~~~ilp~L 2040 (2622)
++.+.+.+.+++.|.++-||..|+-+...++.. .++.+..+++.+-+.+.+.+. ..+++..+.++... ....+..+
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kL 214 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKM 214 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHH
Confidence 467788899999999999999999988887643 344556677777777776553 24566666666532 23355667
Q ss_pred hhhhhcCCCc-hH-HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHH
Q 000050 2041 LPKLVHLPLS-AF-NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118 (2622)
Q Consensus 2041 ip~L~~~~~~-~~-~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll 2118 (2622)
++.+....+. .+ ....+..++.....+-...-..+++.+...++..++.|.-.+..++-.+-. .+...+......+.
T Consensus 215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~ 293 (355)
T 3tjz_B 215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQ 293 (355)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHH
T ss_pred HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHH
Confidence 7777654331 22 222333222221111112235566777777788888887666666544322 22222333344455
Q ss_pred hhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000050 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2622)
Q Consensus 2119 ~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL 2177 (2622)
..+.++++.+|..|+..+..+....+.-+..+ -..+..++.|+|..+..-|..+|
T Consensus 294 ~fLss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 294 LFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 55667889999999999998887655444433 34456677888888766555443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0012 Score=81.40 Aligned_cols=269 Identities=12% Similarity=0.114 Sum_probs=145.0
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 000050 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2622)
Q Consensus 1346 L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~l 1425 (2622)
+..++|...|+-....+..+.+. ....+ -+...+.+-++++ |+-.|-.|+.+++.+. . ...+..+.+.+
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~-~~e~i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~---~---~~m~~~l~~~l 144 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCI-AEDVI---IVTSSLTKDMTGK-EDSYRGPAVRALCQIT---D---STMLQAIERYM 144 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTT-SSCGG---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHC---C---TTTHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCC-HHHHH---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCC---C---HHHHHHHHHHH
Confidence 44567888999888888777765 33333 4677788888887 7999988877666654 2 23466788889
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHh
Q 000050 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2622)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2622)
-+++.|.++.||.+|.-+...+... .++.++.+++.+-+.+.+.+..+...|+.+|..+....+.. +..+++.+.
T Consensus 145 k~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a----~~kLv~~l~ 219 (355)
T 3tjz_B 145 KQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA----VSKMISKFT 219 (355)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH----HHHHHHHHh
Confidence 9999999999999998887777654 45567888999989999999888888888888887654322 334444433
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCC--h-hHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHH
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN--P-EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~--~-~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2622)
+. .-.++-.+- .-+..+....+. + .-..+++.+...+...+..+- +|+.++... .+ .....+...+..+
T Consensus 220 ~~-~l~~~~~q~---~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l--~~-~~~~~~~~a~~~L 292 (355)
T 3tjz_B 220 RH-GLKSPFAYC---MMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNL--PG-CSAKELAPAVSVL 292 (355)
T ss_dssp SS-CCSCHHHHH---HHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------CCCTH
T ss_pred cC-CCcChHHHH---HHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc--cC-CCHHHHHHHHHHH
Confidence 31 111233332 233333333322 2 236778888888887777766 677777642 11 1222233344556
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1582 HRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1582 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
...+.++++++|..|...+..+... .|..+.. .-..+..++.|++..++..|+..|
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~--~P~~v~~----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMK--HPSAVTA----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHH--CcHHHHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 6667777889999998888777663 3334333 334456677788877666555443
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.44 E-value=1.4e-05 Score=85.36 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=87.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2622)
...+.+...++++ ++.+|..|+.+++.+ +. + . ++.++..+.|+++.||..+..+++.+. -.
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~-------~~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRM----GD---E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQ-------DE 72 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSC----SS---T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGC-------SH
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcC-------CH
Confidence 4456677778776 788898887766543 22 1 1 478888999999999999988887662 24
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2622)
..+|.++..+.+++|.+|..++.+|+.+.. +..++.|.+.++|+++.||..|.++|+.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 567888888889999999999999998752 4567888889999999999999999865
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.054 Score=70.72 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=46.7
Q ss_pred hHHHHHHHHccC--CHHHHHHHHHHHHHHHhhcChhhhhhhhh-----------hhhHHHHHhhcCCCCHhhHHHHHHHH
Q 000050 2230 LLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVI-----------PITGPLIRIIGDRFPWQVKSAILSTL 2296 (2622)
Q Consensus 2230 ilp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v~-----------~i~~~Li~~l~~~~~~~vk~~al~~L 2296 (2622)
+++.+++.+... ...+|..|..++++++...+ ..+.++. .++..|+..+.+....++|.+++.++
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455566655544 67889999999999986543 2232222 23333445566667889999999999
Q ss_pred HHHHH
Q 000050 2297 SIIIR 2301 (2622)
Q Consensus 2297 ~~L~~ 2301 (2622)
..++.
T Consensus 390 ~ay~~ 394 (651)
T 3grl_A 390 QCFLY 394 (651)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87764
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.32 Score=63.65 Aligned_cols=211 Identities=17% Similarity=0.137 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcc-
Q 000050 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD-RNSAKRREGALLAFECLCEKLGR- 1412 (2622)
Q Consensus 1335 ~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~-~~~~~~R~~al~al~~La~~~~~- 1412 (2622)
..+.++.|.+.+.++.-.+.||.|..+|..+++........ .-++.+...+++ ..|...-..++..+..+...-+.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 45678888888888777788999999999988766543322 224444444433 23444444454444333221110
Q ss_pred ---------------cchhHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh---H---HhhHHHHHhhcc
Q 000050 1413 ---------------LFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V---KLVLPSLLKGLE 1468 (2622)
Q Consensus 1413 ---------------~~~~~v---~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~---v---~~ilp~Ll~~L~ 1468 (2622)
.+...+ .+-++.++.++...+..+|..+..++..+...-+... + ..-+|.+++.|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 011111 1468889999999999999999999999987655432 2 256788999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCchhh-hhhhhhhHHHHhhhhcCCCH----HHHHHHHHHHHHHhhhcC-C-hhH--HhHH
Q 000050 1469 DKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVIK-N-PEI--ASLV 1539 (2622)
Q Consensus 1469 ~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~~~-~-~~i--~~il 1539 (2622)
++.-..|..++.+|.+++.+.++-. .-.+...++.++..+..... .|-.-|...|..+.+.-. | ..+ ...+
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 9888899999999999998766532 22345677888887765433 677778888888876521 1 122 2345
Q ss_pred HHHHhhcC
Q 000050 1540 PTLLMGLT 1547 (2622)
Q Consensus 1540 p~Ll~~l~ 1547 (2622)
|.|...+.
T Consensus 257 ~~L~~LL~ 264 (651)
T 3grl_A 257 QRMKPWFE 264 (651)
T ss_dssp GGGGGGGC
T ss_pred HHHHHHhC
Confidence 55555543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.51 Score=64.89 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=59.2
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhH-HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH-
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI- 1535 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~iv-p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i- 1535 (2622)
.++| +++.|.+++...|.+||.+|..++......-.-.-..++ +.+..++.|++..||.+|..+|++++..-+....
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4555 556788888999999999999998642221111123344 5567789999999999999999999865332111
Q ss_pred ----HhHHHHHHhhc
Q 000050 1536 ----ASLVPTLLMGL 1546 (2622)
Q Consensus 1536 ----~~ilp~Ll~~l 1546 (2622)
..+++.|...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 34566665554
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.24 E-value=5.9e-05 Score=80.41 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhh
Q 000050 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2622)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~ 1498 (2622)
..-.+.+...+.|+++.||..|..++..+. .. . +|.+++.+.+++|.+|..++.+|+.+.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG----DE---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD----------E 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS----ST---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------H
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------H
Confidence 345677788889999999988877765441 11 1 4888888888999999999998887642 3
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH
Q 000050 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2622)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r 1554 (2622)
..++.|...++|+++.||..|+++|+.++. ...+|.|.+.+.|++..+|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr 121 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFAR 121 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHH
Confidence 457778888889999999999999998863 2456667777767666666
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.14 E-value=5.5e-05 Score=88.70 Aligned_cols=184 Identities=19% Similarity=0.188 Sum_probs=101.3
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 000050 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2622)
Q Consensus 1346 L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~l 1425 (2622)
+..++++.+|..++..+ ++. .+..+++|+ ++.+|..+... ++. +.+
T Consensus 58 ll~d~~~~VR~~AA~~l-------~~~---------~l~~L~~D~-~~~VR~~aA~~-------L~~----------~~L 103 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYS-------PVE---------ALTPLIRDS-DEVVRRAVAYR-------LPR----------EQL 103 (244)
T ss_dssp GTTCSSHHHHHHHHTTS-------CGG---------GGGGGTTCS-SHHHHHHHHTT-------SCS----------GGG
T ss_pred HhcCCCHHHHHHHHHhC-------CHH---------HHHHHccCc-CHHHHHHHHHH-------CCH----------HHH
Confidence 33455667777766642 111 133445555 67777766542 221 234
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHh
Q 000050 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2622)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2622)
...++|++..||.++...+ +.. .+...+.+++|.+|..+..-+ + + +.+.
T Consensus 104 ~~ll~D~d~~VR~~aA~~l-------~~~-------~L~~L~~D~d~~VR~~aA~~l-------~-------~---~~l~ 152 (244)
T 1lrv_A 104 SALMFDEDREVRITVADRL-------PLE-------QLEQMAADRDYLVRAYVVQRI-------P-------P---GRLF 152 (244)
T ss_dssp GGTTTCSCHHHHHHHHHHS-------CTG-------GGGGGTTCSSHHHHHHHHHHS-------C-------G---GGGG
T ss_pred HHHHcCCCHHHHHHHHHhC-------CHH-------HHHHHHcCCCHHHHHHHHHhc-------C-------H---HHHH
Confidence 4556777777777665532 211 122335667777777665521 1 1 1234
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHH-HHHHHhccccccCChhhhhhHHHHHHhh
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2622)
.+++|+++.||..+...+ +. +.+...+.|++..+|.+ +..+ . .+.+...
T Consensus 153 ~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l---------~-------~~~L~~L 202 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRL---------R-------GDDLLEL 202 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHC---------C-------GGGGGGG
T ss_pred HHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhC---------C-------HHHHHHH
Confidence 567788888887777641 11 23335567777777732 2221 0 1234556
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~ 1644 (2622)
+.|.+|.||..+...++ .+.+..+ .|++|.||..+...||
T Consensus 203 l~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 203 LHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 67788888887766532 1334444 7888888888776654
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.33 Score=60.42 Aligned_cols=297 Identities=12% Similarity=0.099 Sum_probs=187.0
Q ss_pred cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000050 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2622)
Q Consensus 2240 ~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~ll 2319 (2622)
.|+...+.-|+..|....+..+ .....-+..++....|. +.++|..|+..|..++.. .+++.+..++.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP-----~l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP-----ELADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG-----GGHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 4578889999999999987765 22233445567777765 888999999999888753 56899999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHH
Q 000050 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKD 2398 (2622)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~ 2398 (2622)
+.|+..+..-+...-.+|-.+...+| ...+..+...+..++..+|+.++..|++-+...+... ..+.-.-|...+..
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK 184 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKK 184 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHH
Confidence 99998888888899999988877654 3456667777766789999999999999888776554 45555667888888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCch---HHHHHHHHHHhh---cCCCCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000050 2399 LVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELLNL---ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2622)
Q Consensus 2399 ~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll~~---~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~ 2472 (2622)
.+.|-...--.....+|+.+-..-... ++.+++.+.... ....+...-...+.++..++......+-...+..=
T Consensus 185 ~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 185 VLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY 264 (507)
T ss_dssp HTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 888876655566667776654333322 233444433221 11122222233455666555444433333333333
Q ss_pred HHHHHHhhhccCC-----hhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCC-----------------H
Q 000050 2473 ILDRLKSSLKDEK-----FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDS-----------------S 2530 (2622)
Q Consensus 2473 i~~~l~~~~~~~~-----~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s-----------------~ 2530 (2622)
+...+...+..=. ...+-.-+.++..+..+++... .....+..+...|..-+.-.. .
T Consensus 265 ~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e-~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~f 343 (507)
T 3u0r_A 265 FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDME-KLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQF 343 (507)
T ss_dssp HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHTTSCCCC--------------CCCH
T ss_pred HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccc-hHHHHHHHHHHHHHHHCCCCcccccccccccccCcccch
Confidence 3333333333211 1256667777777777765321 011223333344443322111 1
Q ss_pred HHHHHHHHHHHHHHhhCchhh
Q 000050 2531 EVRRRALSALKSVAKANPSAI 2551 (2622)
Q Consensus 2531 dvr~~a~~~l~~~a~~~~~~v 2551 (2622)
.--...++++.+++++.|+.+
T Consensus 344 S~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 344 SYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHHHHTTCTHHH
T ss_pred hHHHHHHHHHHHHhhhChhhh
Confidence 223678899999999999765
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0002 Score=83.87 Aligned_cols=185 Identities=17% Similarity=0.099 Sum_probs=122.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHH-HHHHHhccccccCChhhhhhHHHHHHhh
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2622)
.+++|+++.||..+...+. ...+...+.|++..+|.+ ...+ .. +.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------------~~~l~~L~~D~~~~VR~~aA~~L---------~~-------~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------------VEALTPLIRDSDEVVRRAVAYRL---------PR-------EQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------------GGGGGGGTTCSSHHHHHHHHTTS---------CS-------GGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------------HHHHHHHccCcCHHHHHHHHHHC---------CH-------HHHHHH
Confidence 4679999999999998541 123556678999999843 3221 11 245667
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~ 1664 (2622)
++|.++.||..+...+ .. . .+..++.|+++.||..++..+ +.+ ++.
T Consensus 107 l~D~d~~VR~~aA~~l-------~~--~----------~L~~L~~D~d~~VR~~aA~~l-------~~~--------~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL--E----------QLEQMAADRDYLVRAYVVQRI-------PPG--------RLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT--G----------GGGGGTTCSSHHHHHHHHHHS-------CGG--------GGG
T ss_pred HcCCCHHHHHHHHHhC-------CH--H----------HHHHHHcCCCHHHHHHHHHhc-------CHH--------HHH
Confidence 8899999999887632 11 1 234557899999999998732 221 223
Q ss_pred HhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHh
Q 000050 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2622)
Q Consensus 1665 ~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~ 1744 (2622)
.+.++.+..+|..++.. ++.+ .+...+.++++.||..+...+ +. +.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~~----------~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------RG----------DDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------CG----------GGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHH
Confidence 44556667788877654 2222 233456889999998887642 11 35666
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHH
Q 000050 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2622)
Q Consensus 1745 ~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~ 1800 (2622)
.+.|++..||..+...+. .+.+... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 789999999998877643 2344444 8999999998775543
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=68.32 Aligned_cols=192 Identities=15% Similarity=0.092 Sum_probs=116.4
Q ss_pred HhhHHHHHhhccCCCh--hhHHHHHHHHHHHHhhCchhhh-hhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhc-CC
Q 000050 1457 KLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KN 1532 (2622)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w--~~r~~a~~~L~~la~~~p~~l~-~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~-~~ 1532 (2622)
...+|.+++.|.+++. ..+..++..+..+++..+..-. -.-...+|.|+++|...+++||..|+++|..++..- .+
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3457888888888777 7777888888888876543211 112356799999999999999999999999998632 12
Q ss_pred h-hH--HhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhh-------c---------CCCHH
Q 000050 1533 P-EI--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL-------R---------ERSAE 1591 (2622)
Q Consensus 1533 ~-~i--~~ilp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l-------~---------d~~~~ 1591 (2622)
. .+ ...+|.|.+.+. .++..++ .+..+|......+..........+|.|...+ . ..+.+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 2 12 357889999886 4566666 3444443322222111222223345554422 1 12668
Q ss_pred HHHHHHHHHHHhhhhcCC-CCcccchHhhhHHHHHHHhc------CCCHHHHHHHHHHHHHHHhh
Q 000050 1592 TKKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1592 vr~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~------d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
++..|..++.+++..-.+ .+.+... +.+++.|..++. +.+...++.+..+|..|...
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999763101 1112211 224444444433 23456777787777776543
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.057 Score=61.22 Aligned_cols=185 Identities=16% Similarity=0.182 Sum_probs=123.6
Q ss_pred cChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000050 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2622)
Q Consensus 2345 ~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2622)
+.+..|+..+++.+..-+.+.+. ..++-.++....+ .+.++.+...+.+++.+.+|..|+..||.+ . +.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~gf~~-~~~~a~~~~~~~~-------~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~ 101 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHGFKE-EEQRALTDYKSND-------GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD 101 (240)
T ss_dssp -CHHHHHHHHHHHHTC-----CH-HHHHHHHHHHHSC-------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS
T ss_pred hHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHhCC-------HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc
Confidence 34667777777766443322222 1222233333211 456777777888888899999999999988 3 33
Q ss_pred hHHHHHHHHHHhh-cCCCCchhhHhHHHHHHHHHh-hCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000050 2425 GQLADLLQELLNL-ASSPSWAARHGSVLVFATFLR-HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2425 ~~~~~~l~~ll~~-~~~~~~~~r~~~~~~L~~~l~-~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
..+-+++. .+ ..++.|.++.-...++...+. ..|+. .++.+...+.|+++.+|..|+........
T Consensus 102 ~~~L~~ir---~~va~D~~WrVre~lA~a~~~~~~~~~pe~---------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~- 168 (240)
T 3l9t_A 102 KEILIFMR---DEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---------ALPIIDEWLKSSNLHTRRAATEGLRIWTN- 168 (240)
T ss_dssp HHHHHHHH---HTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---------THHHHHHHHHCSSHHHHHHHHHHTCSGGG-
T ss_pred HHHHHHHH---HHhCCCCCccHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHhcCCCHHHHHHHHHhhHHHhc-
Confidence 33334443 42 357789888877888888875 56653 23456677889999999999987643111
Q ss_pred hhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhh
Q 000050 2503 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2622)
Q Consensus 2503 ~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2622)
. |........+++.+-....|++.-||+...+.|+.+++.+|+.|+.++..
T Consensus 169 ---~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 169 ---R-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp ---S-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ---c-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 1 22223456677777777889999999999999999999999999887763
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.22 Score=57.79 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCCh--hHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHH
Q 000050 2155 ISTLIVLLSDSDS--TTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLP 2232 (2622)
Q Consensus 2155 l~~L~~~l~d~d~--~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp 2232 (2622)
++.++.++..+++ +++..|..++..++...+. .++.+.. ...+|
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~---------~r~~I~~-------------------------~G~Ip 55 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSE---------ARKRVNQ-------------------------LRGIL 55 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHH-------------------------TTHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcH---------HHHHHHH-------------------------cCCHH
Confidence 5677888887766 8888887888877643211 1111110 01468
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh--hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCc
Q 000050 2233 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV--IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310 (2622)
Q Consensus 2233 ~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~ 2310 (2622)
.|++.|.++++++++.|+.+|..++.... .-+..+ ...+++|++.|....+.+++..+..+|..|...- ..++.
T Consensus 56 ~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~--~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~--~~k~~ 131 (233)
T 3tt9_A 56 KLLQLLKVQNEDVQRAVCGALRNLVFEDN--DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND--KLKNL 131 (233)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG--GGHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCH--HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh--hhHHH
Confidence 89999999999999999999999986443 222222 3457889999974347889998888888775421 12211
Q ss_pred h-HHHHHHHHHHh-------C---------CCCHHHHHHHHHHHHHHHhccc-------ChhhHHHHHHHhhhc------
Q 000050 2311 L-PQLQTTFIKCL-------Q---------DSTRTVRSSAALALGKLSALST-------RVDPLVGDLLSSLQV------ 2360 (2622)
Q Consensus 2311 l-~~L~~~llk~L-------~---------d~~~~vR~~Aa~aLg~L~~~~~-------~~~~ll~~Ll~~l~~------ 2360 (2622)
+ ..-++.++..+ . ..+..++..|+.||..|+..++ .-+.+++.|+..++.
T Consensus 132 i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~ 211 (233)
T 3tt9_A 132 MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211 (233)
T ss_dssp HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTC
T ss_pred HHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhccc
Confidence 1 11122222211 1 1267999999999999954321 123455666655543
Q ss_pred CCHhHHHHHHHHHHHHH
Q 000050 2361 SDAGIREAILTALKGVL 2377 (2622)
Q Consensus 2361 ~d~~vr~~~l~AL~~vi 2377 (2622)
.+...++.++.+|+.+.
T Consensus 212 ~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 212 PDDKATENCVCILHNLS 228 (233)
T ss_dssp TTCHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHH
Confidence 13456677777776654
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.086 Score=59.80 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=108.8
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHh
Q 000050 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2622)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~ 1696 (2622)
.+.+++....+..++..+||..|+..||.+ . ...+.++.+...+..++...+|..++..+++++...+.+ .
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---K 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---T
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---H
Confidence 455788888888899999999999988876 2 246788877766777888889988888999988766655 3
Q ss_pred HhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 000050 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2622)
Q Consensus 1697 llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~ 1769 (2622)
.++.+..-+.+++..+|..+.....-.+.. ..|......++|.+-....|++.+||.+...+++.+.+..+
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 556677788899999999888765433322 23444556688888889999999999999888887665443
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=95.57 E-value=2.2 Score=53.25 Aligned_cols=262 Identities=16% Similarity=0.126 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCC
Q 000050 2087 DMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166 (2622)
Q Consensus 2087 ~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d 2166 (2622)
+...+..+...+......+. +..+..+..+++.+.|++..+|..|+..|..+|+. .+++.+...|.+++...+
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccc
Confidence 34555555555555554432 22345556666677788888888888888887764 456777777777777666
Q ss_pred hhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHH
Q 000050 2167 STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR 2246 (2622)
Q Consensus 2167 ~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r 2246 (2622)
..-+...-.+|-.+.+..++..+ ..+...+.++++.+|
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~tl------------------------------------------~~lf~~i~~~~e~~R 151 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKGTL------------------------------------------GGLFSQILQGEDIVR 151 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHH------------------------------------------HHHHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcChHHHH------------------------------------------HHHHHHHcccchHHH
Confidence 66666666666666554433322 222333334556677
Q ss_pred HHHHHHHHHHHhhcChhhhhhhhhhh-hHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH--h-
Q 000050 2247 EQAALGLGELIEVTSEQSLKEFVIPI-TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC--L- 2322 (2622)
Q Consensus 2247 ~~aa~~L~~l~~~~~~~~l~p~v~~i-~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~--L- 2322 (2622)
+.+...|..-+...+.+.+.+-+... +.-+..++.+- +.+--...+..|+.+ ++.... +...+|...+..- |
T Consensus 152 er~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV-T~~EF~L~m~lL~~l--kl~~t~-~g~qeLv~ii~eQa~L~ 227 (507)
T 3u0r_A 152 ERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV-TGEEFVLFMKILSGL--KSLQTV-SGRQQLVELVAEQADLE 227 (507)
T ss_dssp HHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHTS--GGGSSH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhc--ccccCc-hHHHHHHHHHHHHHhcc
Confidence 76666666655555544443333222 22233444432 222212222222111 111111 1123344444332 1
Q ss_pred ---CCCCHHHHHHHHHHHHHHHhc---ccChhhHHHHHHHh----hhcC-C----HhHHHHHHHHHHHHHhhcC-CCCCh
Q 000050 2323 ---QDSTRTVRSSAALALGKLSAL---STRVDPLVGDLLSS----LQVS-D----AGIREAILTALKGVLKHAG-KSVSS 2386 (2622)
Q Consensus 2323 ---~d~~~~vR~~Aa~aLg~L~~~---~~~~~~ll~~Ll~~----l~~~-d----~~vr~~~l~AL~~vi~~~g-~~~~~ 2386 (2622)
.-.+.+.-.+...|+-.-.-+ +.+-.+++.-++.. +..- + .+.|...|++++++...+| .....
T Consensus 228 ~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~ 307 (507)
T 3u0r_A 228 QTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLE 307 (507)
T ss_dssp SCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHH
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHH
Confidence 112444444455555443221 22233444444433 3321 1 2378899999999999988 44435
Q ss_pred HHHHHHHHHHHHhhc
Q 000050 2387 AVKIRVYSVLKDLVY 2401 (2622)
Q Consensus 2387 ~~~~~i~~~L~~~l~ 2401 (2622)
.....|+..|...+=
T Consensus 308 ~~l~~iy~~L~~ymP 322 (507)
T 3u0r_A 308 TNLRKLFDKLLEYMP 322 (507)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCC
Confidence 677888888876654
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=3.5 Score=51.05 Aligned_cols=237 Identities=11% Similarity=0.086 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCc
Q 000050 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 2443 (2622)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~ 2443 (2622)
+.|-..|.-+.|++-+-... ..+.+++.+.+...+++..+|+-+++.|+..+....+ .+...++.+...+.+++.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e-l~~~~l~~L~~LL~d~d~ 114 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE-LLLKLIANLNMLLRDENV 114 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCH
Confidence 34555666666654432222 2344444444555566666777777777766654332 333333333222233333
Q ss_pred hhhHhHHHHHHHHHh-------hCCcc-ccCChhHHH---HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhc--CC--
Q 000050 2444 AARHGSVLVFATFLR-------HNPSA-ISMSPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GP-- 2508 (2622)
Q Consensus 2444 ~~r~~~~~~L~~~l~-------~~~~~-i~~~~~~~~---i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~--~~-- 2508 (2622)
.....++.+...+.. .++.. ......|+. +-..+...+.+++..+|-.++.-+-.++..+... ++
T Consensus 115 ~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~ 194 (386)
T 3o2t_A 115 NVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEI 194 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCccc
Confidence 333334443333321 11110 000123433 3456667788888999999999888877655321 11
Q ss_pred --------------CCc---------hhhHhHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHH
Q 000050 2509 --------------ANT---------TVVVDILASVVSALHD--DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 2563 (2622)
Q Consensus 2509 --------------~~~---------~~l~~~l~~l~~~l~d--~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~ 2563 (2622)
.++ .....++..++..+.+ -++-.-.+++..|..+++..|.. ...++|.+.
T Consensus 195 p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~----~~rIl~aL~ 270 (386)
T 3o2t_A 195 PRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMF----MSEVIQAYE 270 (386)
T ss_dssp CGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGG----HHHHHHHHH
T ss_pred ccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHH----HHHHHHHHH
Confidence 111 1123355666666553 23445567888899999998775 344555554
Q ss_pred hhh--------cCCcchhhchhHHHHHHHhcccccchhHHHHHHHhhchhhhhh
Q 000050 2564 ECL--------KDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRL 2609 (2622)
Q Consensus 2564 ~~~--------~~~~~~vk~aae~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 2609 (2622)
.-. +-..-.|+...-..++++++-+...+..+.+..+|..|-+++.
T Consensus 271 ~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~s~~ 324 (386)
T 3o2t_A 271 TLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQA 324 (386)
T ss_dssp HHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTCCHH
T ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHcccHH
Confidence 321 1112235666778899999988888888899999877765543
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=15 Score=45.43 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhH
Q 000050 2090 VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT 2169 (2622)
Q Consensus 2090 vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V 2169 (2622)
.+-..+.-...++..-+..-++.+++.+++...+.+..+|...+..+...|.. -..+++.++..|..+++|.|..|
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V 116 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNV 116 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHH
Confidence 34444445555544435566888999999998898999999999999888864 23456888889999999999999
Q ss_pred HHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHH
Q 000050 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQA 2249 (2622)
Q Consensus 2170 ~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~a 2249 (2622)
.+.+..+.+.+.+. .+..+. ............+ ..+..+-..++..+.+++..+|..+
T Consensus 117 ~K~~I~~~tslYpl--------~f~~i~---~~~~~~~~~e~~W-----------~~m~~lK~~Il~~~ds~n~GVrl~a 174 (386)
T 3o2t_A 117 VKKAILTMTQLYKV--------ALQWMV---KSRVISELQEACW-----------DMVSAMAGDIILLLDSDNDGIRTHA 174 (386)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHH---HC-CCCHHHHHHH-----------HHHHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------HHHHHh---cCCCcchhHHHHH-----------HHHHHHHHHHHHHhccCCcchHHHH
Confidence 99988888876532 111111 1100000000000 0122233344555677788899999
Q ss_pred HHHHHHHHhh
Q 000050 2250 ALGLGELIEV 2259 (2622)
Q Consensus 2250 a~~L~~l~~~ 2259 (2622)
.+.+..++..
T Consensus 175 iKFle~VIl~ 184 (386)
T 3o2t_A 175 IKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888843
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.12 E-value=18 Score=42.28 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChh
Q 000050 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168 (2622)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~ 2168 (2622)
+.+-..+.-...++..-++..++.+++.++....+.+..+|...+..+...|..- ..+.+.+++.|..+++|.|+.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHH
Confidence 4555555555555444455678999999999888888999999999998888542 356788999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchh-h--hhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHH
Q 000050 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRD-K--ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245 (2622)
Q Consensus 2169 V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~-~--~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~ 2245 (2622)
|.+.+..+.+.+.+.. + +.+..... . ....| ..+..+-..++..+.+++..+
T Consensus 106 V~K~~I~~~~~iY~~~--------l----~~i~~~~~~~~~~~~~W-------------~~m~~lK~~Il~~~~s~n~gv 160 (257)
T 3gs3_A 106 VIKRVIQACGSIYKNG--------L----QYLCSLMEPGDSAEQAW-------------NILSLIKAQILDMIDNENDGI 160 (257)
T ss_dssp HHHHHHHHHHHHHHHH--------H----HHHTTSSSCCHHHHHHH-------------HHHHHHHHHHHHGGGSSCHHH
T ss_pred HHHHHHHHHHHHHHHH--------H----HHHhcCCCCcchHHHHH-------------HHHHHHHHHHHHHHccCCcch
Confidence 9999988888775432 1 11110000 0 00000 011223333445566778889
Q ss_pred HHHHHHHHHHHHh
Q 000050 2246 REQAALGLGELIE 2258 (2622)
Q Consensus 2246 r~~aa~~L~~l~~ 2258 (2622)
|..+.+.+..++.
T Consensus 161 kl~~iKF~e~vIl 173 (257)
T 3gs3_A 161 RTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888874
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=92.07 E-value=3.4 Score=59.45 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHHHHhh-------cHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHH
Q 000050 1432 QVVAVREAAECAARAMMSQL-------SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2622)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l-------~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L 1504 (2622)
.++.+|+.+.-+++.++... +...++.+...+.+.+...+...+..++.+||++.. |..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 35678888877777766532 222345555556666666676777888899998864 3344555
Q ss_pred hhhhc-------CCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCC--ChhHH-HHHHHHHhccccccCChhhh
Q 000050 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2622)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~--~~~~r-~al~~L~~~~~~~~~~~~~l 1574 (2622)
.+++. +...+||.+|++||..++... | ..+-+.++....|. +..+| .|+..+..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55543 224689999999999998532 2 22334455555333 34566 455555431 1233
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
..+.......-.+.+..|+......|.++++.
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 22333333333556778887777777777653
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=89.60 E-value=2.4 Score=47.10 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=88.2
Q ss_pred cCchhhHHHHHHHHccC------CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC--CCHhhHHHHHHHH
Q 000050 2225 KALQPLLPIFLQGLISG------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR--FPWQVKSAILSTL 2296 (2622)
Q Consensus 2225 ~~l~~ilp~ll~~L~~~------~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~--~~~~vk~~al~~L 2296 (2622)
.++++++|-|.+-+.++ +...-......+..+...-. =.+.||+-+++++++..+-.+ .+..+|..|...|
T Consensus 36 ~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL 114 (196)
T 4atg_A 36 SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIV 114 (196)
T ss_dssp SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 46778888887655432 44555566777777776654 468999999999988875332 1237999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHH
Q 000050 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLS 2341 (2622)
Q Consensus 2297 ~~L~~~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~ 2341 (2622)
+.++++.+......-|.+..++.+.+.|+ +....--|..+|..+.
T Consensus 115 ~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 115 KYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 99999999877777789999999999997 6777777777777663
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=86.92 E-value=28 Score=38.56 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHH
Q 000050 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLD 1664 (2622)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~vR~~a~~aL~~L~~~~g~~~---~~~ll~~Ll~ 1664 (2622)
..-......+..+... ..-.+.||+..++|.+...+-.. ...+|+.|+..++.+++..|..+ .+.+...+.+
T Consensus 61 ~~L~~lm~~~~ALl~N--~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k 138 (196)
T 4atg_A 61 EVLKTCIALYFSLIKN--KHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG 138 (196)
T ss_dssp HHHHHHHHHHHHHHHC--TTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence 3333444455555542 22457899999999999987532 22799999999999999998753 2344444444
Q ss_pred Hhhhc-CChHHHHHHHHHHHHHHHHhchhHHHhHh-HHH
Q 000050 1665 ALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHIL-PDI 1701 (2622)
Q Consensus 1665 ~L~~~-~~~~~r~~a~~~L~~i~~~~g~~~l~~ll-p~l 1701 (2622)
.+.+. .+....-|+..++.. +|.+..+.++ |.+
T Consensus 139 ~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l 173 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHA 173 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCH
Confidence 44433 344566677777665 4666554433 554
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=85.35 E-value=62 Score=37.70 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=106.4
Q ss_pred HHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHH
Q 000050 2354 LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433 (2622)
Q Consensus 2354 Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ 2433 (2622)
|++..+....+.+-..|.-.++++-... +.+.+++++.+.....+++..+|+-.++.++..+...++ .+...++.
T Consensus 20 lln~A~~~~~~~kl~~L~qa~el~~~~d----p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-l~~~~l~~ 94 (257)
T 3gs3_A 20 WCNELVIASPSTKCELLAKVQETVLGSC----AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-LLPHVINV 94 (257)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTTTT----GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHH
T ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHccC----HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3443333222466666677777554422 234556666666666667777888888888777765542 44445554
Q ss_pred HHhhcCCCCchhhHhHHHHHHHHHh-------hCCcc-ccCChhHHH---HHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000050 2434 LLNLASSPSWAARHGSVLVFATFLR-------HNPSA-ISMSPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2434 ll~~~~~~~~~~r~~~~~~L~~~l~-------~~~~~-i~~~~~~~~---i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
+...+.+++......++.+...+.. .+|.. -.....|+. +-..+...+.+.+..+|-.++.-+-.++..
T Consensus 95 L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 95 VSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 4333444444444445554444432 12110 000123444 345677778888999999999988887765
Q ss_pred hhhc---------------CCCCch---------hhHhHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCchh
Q 000050 2503 QIQS---------------GPANTT---------VVVDILASVVSALHDD--SSEVRRRALSALKSVAKANPSA 2550 (2622)
Q Consensus 2503 ~~~~---------------~~~~~~---------~l~~~l~~l~~~l~d~--s~dvr~~a~~~l~~~a~~~~~~ 2550 (2622)
+... -|.+++ ....++..++..+.+. +.-.-.+++..|..+++..|..
T Consensus 175 qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~ 248 (257)
T 3gs3_A 175 QSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIF 248 (257)
T ss_dssp TSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred hcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHH
Confidence 4321 111111 1123444444443332 4445668888899999988774
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=85.25 E-value=34 Score=46.97 Aligned_cols=265 Identities=11% Similarity=0.084 Sum_probs=145.6
Q ss_pred chhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcC---hhhhhhhhhhhhHHHHHhhcC--CCCHhhHHHHHHHHHHHHH
Q 000050 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTS---EQSLKEFVIPITGPLIRIIGD--RFPWQVKSAILSTLSIIIR 2301 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~---~~~l~p~v~~i~~~Li~~l~~--~~~~~vk~~al~~L~~L~~ 2301 (2622)
+..++|....|+-+.+..+...+..++..++.-.+ .-.+.+.+..+ ...|.. -.+..-..+++.+|..+++
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~----y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDL----YDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHH----HHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHH----HHHhccccccchhHHHHHHHHHHHHHH
Confidence 45578888899999999988999999999997554 22222222333 333433 2345556678888887776
Q ss_pred hc--CCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC---------------------------------
Q 000050 2302 KG--GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR--------------------------------- 2346 (2622)
Q Consensus 2302 ~~--~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~--------------------------------- 2346 (2622)
-+ +..+++++..+...++..+.-++..--..+...+..++..-|-
T Consensus 413 ~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (799)
T 1vsy_4 413 FIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESS 492 (799)
T ss_dssp HHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCS
T ss_pred HHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcccccc
Confidence 43 2346778888888888888767777777777777776442111
Q ss_pred ------------------------hhhHHHHHHHhhhc-CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 000050 2347 ------------------------VDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2622)
Q Consensus 2347 ------------------------~~~ll~~Ll~~l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2622)
+..++..++..++. .+..+-...-.++.-++.++ +++..+.++.-+.+...
T Consensus 493 ~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~l----S~~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 493 KTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESM----DDKIFNYFASLLNRNFW 568 (799)
T ss_dssp SSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTB----CHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHH
Confidence 01122223333321 12222233333333333333 33333444443333333
Q ss_pred CC-CHHHHHHHHHH----HHHHHhhcCchHHHHHHHHHHhh-------c-----CC----CCchhhHhHHHHHHHHHhhC
Q 000050 2402 HD-DDHVRVSAASI----LGIMSQCMEDGQLADLLQELLNL-------A-----SS----PSWAARHGSVLVFATFLRHN 2460 (2622)
Q Consensus 2402 ~~-~~~vr~~aa~~----Lg~L~~~~~~~~~~~~l~~ll~~-------~-----~~----~~~~~r~~~~~~L~~~l~~~ 2460 (2622)
+. .......++.. ++.+++..|+ .+..+++.+... . .. +......-....|+.++..+
T Consensus 569 ~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~ 647 (799)
T 1vsy_4 569 SNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNC 647 (799)
T ss_dssp SCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcC
Confidence 22 11122344444 6788888887 766666654311 1 01 01112223455777778888
Q ss_pred CccccCChhHHHHHHHHHhhh-ccCChhHHHhHHHHHHHHHhh
Q 000050 2461 PSAISMSPLFLSILDRLKSSL-KDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2461 ~~~i~~~~~~~~i~~~l~~~~-~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
+..++ ++.+++.+.+.... +..+..+-..+..-+..++..
T Consensus 648 g~~lL--~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 648 HESLL--EYSDELITFMKYLYDNVTNPPLDVITSIVIHSALAT 688 (799)
T ss_dssp GGGGG--TTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHH
T ss_pred cHHHH--ccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 77775 46777777666555 334555444444445554444
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=84.72 E-value=43 Score=46.00 Aligned_cols=277 Identities=13% Similarity=0.130 Sum_probs=139.6
Q ss_pred HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcC---CCHHHHHHHHHHHHHHhhhcCC
Q 000050 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D---~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
++.++|.++.++-+++-.+...+..++..+++..|......+|.++..+...|.. ..+.=-.+|.++|..++..+-.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 4667788888888888888888889999999988833333456666666666655 3444445667777777755432
Q ss_pred -hhHH-hHHHHHHhhcC--CCChhHH--HHHHHHHhccccccC-----Ch--hhh---hhHHHHHHhhh---c-------
Q 000050 1533 -PEIA-SLVPTLLMGLT--DPNDHTK--YSLDILLQTTFVNTV-----DA--PSL---ALLVPIVHRGL---R------- 1586 (2622)
Q Consensus 1533 -~~i~-~ilp~Ll~~l~--d~~~~~r--~al~~L~~~~~~~~~-----~~--~~l---~~i~p~L~~~l---~------- 1586 (2622)
+.+. .+.|.|...+. |+++-.+ .+++.+.. +...+ .. ..+ ....|.+..-+ +
T Consensus 417 ~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~--i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 494 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVS--IAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKT 494 (799)
T ss_dssp STTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHH--HHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSS
T ss_pred CcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH--HHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcccccccc
Confidence 2222 23333322221 4544322 23332221 11111 00 000 00011111110 0
Q ss_pred ---CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCCCchhhHHHH
Q 000050 1587 ---ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2622)
Q Consensus 1587 ---d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~L 1662 (2622)
|.+.+.+ .++.. + ..+..++..++..+..++.. .+..+-.....++..+...+.++.++.++..+
T Consensus 495 ~~~d~~~~~~--------~~~~s-T--~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~ 563 (799)
T 1vsy_4 495 FRVDDELLNN--------AFKAS-T--TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLL 563 (799)
T ss_dssp CCCCTTHHHH--------HHHHH-T--STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHH
T ss_pred ccccHHHHHH--------HHHHH-H--hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 0111100 11111 1 13445566666777777663 33444455566677777777777677777766
Q ss_pred HHHhhhcCChHHHHHHHHH----HHHHHHHhchhHHHhHhHHHHHhcc----CC------Chhh--HH----HHHHHHHH
Q 000050 1663 LDALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCS----HQ------RASV--RD----GYLTLFKY 1722 (2622)
Q Consensus 1663 l~~L~~~~~~~~r~~a~~~----L~~i~~~~g~~~l~~llp~l~~~l~----~~------~~~v--R~----~al~~l~~ 1722 (2622)
.+...+............- +..++..-+. .+..++|.+...+. +. ..++ ++ -.+.++..
T Consensus 564 ~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~ 642 (799)
T 1vsy_4 564 NRNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALND 642 (799)
T ss_dssp HHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHH
Confidence 6655443211100011111 2333344344 56666666553321 11 1111 22 34567777
Q ss_pred hhhhhCcchhhhHHhHHHHHHhhc
Q 000050 1723 LPRSLGVQFQNYLQQVLPAILDGL 1746 (2622)
Q Consensus 1723 L~~~~g~~f~p~l~~ii~~ll~~L 1746 (2622)
+....|..+.+|-.+++..+...+
T Consensus 643 ~v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 643 VLRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HHTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHhcCcHHHHccHHHHHHHHHHHH
Confidence 777788888899888777666555
|
| >3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* | Back alignment and structure |
|---|
Probab=82.87 E-value=9.6 Score=44.13 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=92.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhH-HHHHHHHHhhCCccccCChhHHH
Q 000050 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGS-VLVFATFLRHNPSAISMSPLFLS 2472 (2622)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~-~~~L~~~l~~~~~~i~~~~~~~~ 2472 (2622)
.++..+..+...+.|-.|...+....+...++.+ +.+..++. .-++|...-.. ...++.+++..|+..
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l-~~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p~~~-------- 132 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHI-PFLEELIV--TKSWWDSVDSIVPTFLGDIFLKHPELI-------- 132 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGH-HHHHHHHT--SSCCHHHHHHHTTTHHHHHHHHCGGGG--------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHc--cCCChHHHHHhhHHHHHHHHHHCHHHH--------
Confidence 3455566666667888887777765544444333 34455544 24566543322 234456666666533
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhh
Q 000050 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552 (2622)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~ 2552 (2622)
.+.+.+...|+++.+|..|+.++ +..... ......+..+...+.|++.=|+.+...+|+.+++++|+.+.
T Consensus 133 -~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~------~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 133 -SAYIPKWIASDNIWLQRAAILFQ---LKYKQK------MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp -GGTHHHHHHSSCHHHHHHHHHTT---TTCGGG------CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -HHHHHHHhcCCchHHHHHHHHHH---HHHHhC------CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 23456677889999999998764 222211 12334555556678899999999999999999999999999
Q ss_pred hhHhh
Q 000050 2553 VHVAL 2557 (2622)
Q Consensus 2553 ~~l~~ 2557 (2622)
+|+..
T Consensus 203 ~fl~~ 207 (232)
T 3jxy_A 203 EYVQN 207 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98863
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=82.77 E-value=53 Score=47.10 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcC----CChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2152 PNMISTLIVLLSD----SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2152 ~~il~~L~~~l~d----~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
++++..+..++.+ .++.++..++-+++.++...... ...|.++.+
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~-------------------------------~~~c~~~~v 438 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN-------------------------------TVSCPDELL 438 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT-------------------------------CSSCCGGGT
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc-------------------------------CCCCCHHHH
Confidence 5667777777654 45678889999999887642110 011223445
Q ss_pred hhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhc------CCCCHhhHHHHHHHHHHHHH
Q 000050 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG------DRFPWQVKSAILSTLSIIIR 2301 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~------~~~~~~vk~~al~~L~~L~~ 2301 (2622)
.++...+.+++..++.+.+..++.+||.+..- ..+ ..|.+.+. ...+..+|.+|+.+|..+..
T Consensus 439 ~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~~l--------~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 439 QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---NSI--------KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---GGH--------HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---hHH--------HHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 66777777788888888888899999988742 122 22233332 12245688889998876643
Q ss_pred hcCCCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhc-CCHhHHHHHHHHHHHHHh
Q 000050 2302 KGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLK 2378 (2622)
Q Consensus 2302 ~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~-~d~~vr~~~l~AL~~vi~ 2378 (2622)
. +-..+.+.+++.+.|. +.++|.+|...|= ...|. ...+..+...+.. ++..|+..+...|..+..
T Consensus 508 ~-------~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm---~t~P~-~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 508 R-------DPRKVQEIVLPIFLNVAIKSELRIRSCIVFF---ESKPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp T-------CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH---HTCCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred h-------chHHHHHHHHHHhcCCCCChHHHHHHHHHHH---HHCcC-HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 2 1135778888888664 8999999987763 32333 2356666666643 556676666666655554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2622 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 8e-76 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-67 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-40 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-24 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 5e-19 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 8e-38 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 7e-26 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-23 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 1e-15 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 4e-13 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-33 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 1e-17 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-13 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 9e-05 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 7e-31 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 4e-18 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 7e-04 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 5e-22 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-20 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 4e-20 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 4e-18 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 6e-18 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-17 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 5e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-09 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 8e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-05 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 9e-19 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 1e-16 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 9e-16 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-10 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-07 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 7e-16 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 3e-13 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 4e-10 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 3e-09 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 8e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 4e-11 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 6e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 8e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.002 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 6e-10 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 8e-09 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 1e-08 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 1e-04 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 0.001 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.001 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 4e-05 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 1e-04 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 0.002 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 275 bits (704), Expect = 8e-76
Identities = 154/1100 (14%), Positives = 362/1100 (32%), Gaps = 77/1100 (7%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+ +LL+ + + + L+ + + + K+V + ++L D + +VQ+
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
L + S +K ++ ++V TL + + + I L+T A S + L
Sbjct: 65 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 1579 PIVHRGL---------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
V + + ++ + +A I+ +M S + ++ + +L + L
Sbjct: 125 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS--RQGGLLVNFHPSILTCLLPQLT 182
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
P VR A+G L+ G F DL+ LL L ++S Q ++ +
Sbjct: 183 SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 242
Query: 1690 GTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746
G Y E I+P +++ C+ +R+ + F+ R + ++ ++ L L
Sbjct: 243 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 302
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806
+ D + + + +W++R+++ + L ++
Sbjct: 303 TYDPNYNYDDEDEDENAMDADGG-DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 361
Query: 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866
+ E + + +V A +
Sbjct: 362 HEMLPEFYKTVSPALISRFKERE---------ENVKADVFHAYLSLLKQTRPVQSWLCDP 412
Query: 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---S 1923
L+ +P ++ L + S + RQ L ELV L +
Sbjct: 413 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 472
Query: 1924 IIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
++P + L D S++ + L ++ + + L+P + + D ++
Sbjct: 473 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 532
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041
A L L K D +S A +K + T + +
Sbjct: 533 TSEALLVTQQLVKVIRPL--------------DQPSSFDATPYIKDLF----TCTIKRLK 574
Query: 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK--EAAE 2099
+ + +G + G L L L L + ++ + ++ A
Sbjct: 575 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAG 634
Query: 2100 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 2159
+ + + V L + NQ +++ + + KN L + + +
Sbjct: 635 SPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDEL 694
Query: 2160 VLLSDSDSTTVAAAW--------EALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK 2211
L V+ + ++ + + I ++R +
Sbjct: 695 PPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLD 754
Query: 2212 KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP 2271
+++ G + L + +A +Q+ + + + + KE
Sbjct: 755 FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAV 814
Query: 2272 ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRS 2331
+ + + R ++ L +L + + +L++ ++ + V+S
Sbjct: 815 VGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL---SGQLELKSVILEAFSSPSEEVKS 871
Query: 2332 SAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391
+A+ ALG +S + + + +L + S + +L +LK ++ A
Sbjct: 872 AASYALGSISVGN--LPEYLPFVLQEIT-SQPKRQYLLLHSLKEIISSASVVGLKPYVEN 928
Query: 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVL 2451
++++L ++ R A LG ++ LL L S S AR V
Sbjct: 929 IWALLLKHCECAEEGTRNVVAECLGKLTL----IDPETLLPRLKGYLISGSSYARSSVVT 984
Query: 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 2511
+ +P I PL + + +L+D +R + ++
Sbjct: 985 AVKFTISDHPQPI--DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK-------P 1035
Query: 2512 TVVVDILASVVSALHDDSSE 2531
+++ D+L +V+ L++++
Sbjct: 1036 SLIRDLLDTVLPHLYNETKV 1055
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 250 bits (638), Expect = 1e-67
Identities = 156/1107 (14%), Positives = 358/1107 (32%), Gaps = 92/1107 (8%)
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
L +K + +K D L K K DD VV +L +L + VQ
Sbjct: 8 LLEKMTSSDK-DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAV 66
Query: 1322 SCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK---- 1376
CL PL+ + + + T+V L M SDK R ++ GL V+ +S
Sbjct: 67 KCLGPLVSKVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 125
Query: 1377 ---YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQV 1433
I L +A + + AL + + G L + +L LL +
Sbjct: 126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR 185
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ 1492
+AVR+ A ++ ++ LL L ++ + T ++ +Q + A++ A +
Sbjct: 186 LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 245
Query: 1493 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTD- 1548
+ + L KI+P + + +++ A + P +++++ L LT
Sbjct: 246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 305
Query: 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608
PN + + D + + + S + ++ AA+ + + + T
Sbjct: 306 PNYNYDDEDEDENAMDADGGDDDDQGS---DDEYSDDDDMSWKVRRAAAKCLDAV--VST 360
Query: 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
+ + + + P + + V++ A SL++ ++ ++
Sbjct: 361 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 420
Query: 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728
+ ++ +I+ + + + R + L L
Sbjct: 421 PLTMLQS-----------------QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 463
Query: 1729 VQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATTSLPLLLP----AVED 1782
++ ++P I+ L D + +++ AL +V++ +++ + V
Sbjct: 464 GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 523
Query: 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842
+ + ++I ++ + L+ + + + + T
Sbjct: 524 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK------------ 571
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1902
+ +D+ V++ A+ I+ N L +P + + L + +
Sbjct: 572 -------RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 1903 QVA--GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
V G ++ VL +PIL+ L+ + + G L ++ + S
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQT 2017
+ +D ++ + + +S + V + A +TL K + I+ L+ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 2018 SDTALDGLKQIL-----SVRTTAVLPHILPKLVHLPLSAFNA-------HALGALAEVAG 2065
AL + + +L L S A +++
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 2066 PGLNFHLGTILPALLSAMGDDDMD--VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD 2123
++ + + + ++ LA + V ID G L S +L+
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 2124 NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183
++ +++Y +G + ++ S +L +++S
Sbjct: 865 PSEEVKSAASYALG--------SISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISS 916
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
Y++ I + + + G + LLP LISGS+
Sbjct: 917 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSS 976
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303
R + I + + + G ++ + D V+ L T +
Sbjct: 977 YARSSVVTAVKFTISDHPQ-PIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSAAHNK 1034
Query: 2304 GIALKPFLPQLQTTFIKCLQDSTRTVR 2330
++ L + + +R
Sbjct: 1035 PSLIRDLLDTVLPHLYNETKVRKELIR 1061
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 161 bits (407), Expect = 4e-40
Identities = 140/999 (14%), Positives = 305/999 (30%), Gaps = 103/999 (10%)
Query: 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679
++ + K+L D EV+++A + +G L+ + E +V L + SD + R ++
Sbjct: 46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQL-RDISS 104
Query: 1680 QGLSEVLAAL-----GTVYFEHILPDIIRNCSHQRA-----SVRDGYLTLFKYLPRSLGV 1729
GL V+ L G+ ++ I + A SV+ L + + G
Sbjct: 105 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-NDN 1788
N+ +L +L L +VR + A LV L+ + + ND+
Sbjct: 165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS 224
Query: 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848
++ ++ + + + G+ L +++
Sbjct: 225 MSTTRTYIQCIAAISRQAGHRIGEYL----------------------------EKIIPL 256
Query: 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1908
+ + +R+ + +++ V PK + + ++N + L +
Sbjct: 257 VVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDED 316
Query: 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968
+ G+ S RR + V L F + P
Sbjct: 317 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR--HEMLPEFYKTVSP 374
Query: 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028
+ + + V+ A+ +L K P + E T L+
Sbjct: 375 ALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT------MLQSQ 428
Query: 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088
+ A+ + K + + L L V L H+ ++P ++ ++ D
Sbjct: 429 VPNIVKALHKQMKEK--SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 2089 DVQSLAKEAAETVTLVIDEEG------VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142
+ ++ + V++LV ++ VGD I + + K
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV 546
Query: 2143 SKLYLVDEAPNMISTLIVLLS---------DSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193
+ + + + L + D D A + +++ ++ +
Sbjct: 547 IRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLP 606
Query: 2194 KVIRDAISTSRDKERRKKKGGPIL-IPGFCLPKALQPLLPIFLQGLI----SGSAELREQ 2248
++ + +++ R + I G L L+P+L + L L+
Sbjct: 607 NTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLG 666
Query: 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308
L LI+ S+ I + + V +S L+ + + +L
Sbjct: 667 TLSALDILIKNYSDSLTAAM-IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 2309 PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSL--------- 2358
+ I ++ + SA L + ++ + DLL L
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM 2418
++ +I + + + K + V + V D +R+ A LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNS---RSTDSIRLLALLSLGEV 842
Query: 2419 SQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK 2478
++ +L +L SSPS + + + N P L +
Sbjct: 843 GHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP--EYLPFVLQEIT--- 897
Query: 2479 SSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS 2538
+ + +L ++ G V +I A ++ R
Sbjct: 898 -----SQPKRQYLLLHSLKEIISSASVVGLKP--YVENIWALLLKHCECAEEGTRNVVAE 950
Query: 2539 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
L + +P ++ P L L GS+ R +
Sbjct: 951 CLGKLTLIDPETLL-------PRLKGYLISGSSYARSSV 982
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (274), Expect = 2e-24
Identities = 127/948 (13%), Positives = 281/948 (29%), Gaps = 91/948 (9%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ L +DP + + ED
Sbjct: 258 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 317
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 318 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 377
Query: 1178 RDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRML 1237
+NV A L + L ++ +
Sbjct: 378 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 437
Query: 1238 NAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297
+ +K + + E + + ++ + L
Sbjct: 438 K---QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP-------GIIFSLNDKSSS 487
Query: 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRG 1357
+ +D L + + + L+ + + ++ ++
Sbjct: 488 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV---ACVGDPFYKITSEALLVTQQLV 544
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
F + K T++ A + +E A+ + LG
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 1418 VIQMLPLLLVAFSD---QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
+ L + L + ++ V+ A + L + +P L L
Sbjct: 605 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR-PVLGEGVPILASFLRKNQRAL 663
Query: 1475 KQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
K ++ L + + + +P L ++ + T L +V
Sbjct: 664 KLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSS 723
Query: 1531 KNPEIASLVPTLLMGLTDP--NDHTKYSLDILLQTTFVNTVDAPSLALLVP-IVHRGLRE 1587
+ S++ L+ + P ++ Q V + L+ + +
Sbjct: 724 LSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQ 783
Query: 1588 RSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+A T K++ + + +T PK+ +G + +VK +R +A ++G
Sbjct: 784 STALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD--SIRLLALLSLGE 841
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
+ + +L S +L+A S + V +S A+ L + LP +++
Sbjct: 842 VGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYALGS----ISVGNLPEYLPFVLQEI 896
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
+ Q +L + + + V + Y++ + +L E R+ L
Sbjct: 897 TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT 956
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
T LP L + G + R S V + + D
Sbjct: 957 LIDPETLLPRLKGYLISG----SSYARSSVVTAVKFTI----------------SDHPQP 996
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
+ + I L L D L+VR+ AL + + N P +++++
Sbjct: 997 IDPLLKNCIGDF--------LKTL----EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1044
Query: 1886 LMNTLISSLASSSSERRQVA------GRALGELVRK-------------LGERVLPSIIP 1926
++ L + R+V G +RK L + +
Sbjct: 1045 VLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLN 1104
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974
+ GLKD + + L +++ S +L +D L+ +R
Sbjct: 1105 HVEDGLKDHYDIKMLT-FLMLVR-LSTLCPSAVLQRLDRLVEPLRATC 1150
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.5 bits (228), Expect = 5e-19
Identities = 162/1207 (13%), Positives = 327/1207 (27%), Gaps = 110/1207 (9%)
Query: 354 NALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSD 413
N L K + + K +L +D+ N EV+ + + + +
Sbjct: 25 NDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEYQVET 83
Query: 414 LLSFFASGLKE-KEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLD 472
++ + + KE LR L+ + S+L + + + T A+ + +
Sbjct: 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE 143
Query: 473 GIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCM--ACVEL 530
+ ++ A DI A+ + L+ PS++ + S + +
Sbjct: 144 DVSV-----QLEALDIMADML---SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195
Query: 531 LVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLL 590
L L++ + V L+ L+ + + S + I H L
Sbjct: 196 LGHLVMSCGNIVFV----DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251
Query: 591 EFSNF-LSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASAR 649
+ + + F V V T++ I L P+ +
Sbjct: 252 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 311
Query: 650 VIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANL 709
DA ++ + +S V L ++ +
Sbjct: 312 DEDED-------ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 364
Query: 710 LEQ--QAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSS 767
L + + +L + ++ L D E L+
Sbjct: 365 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 424
Query: 768 EQGV------YIAEIVAAKNTKQSKGRFRMYEE------QDGVDHVGSNHSAKRESANRE 815
Q + + + K+ K + F M E H+ S N +
Sbjct: 425 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK 484
Query: 816 VSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSL-MLSALGEMA 874
S + K S + + + + V ++ L ++
Sbjct: 485 SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 544
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++ L I A + ++ + ++ L
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 935 VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERIL 994
+ + + + L I TV + + P++
Sbjct: 605 LPNTLQIFLE---------------RLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEG- 648
Query: 995 LSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGL 1054
+L + L L L + +L S AA+ A+ + L
Sbjct: 649 ---------VPILASFLRKNQRALKLGTLSALDILIKNYS--DSLTAAMIDAVLDELPPL 697
Query: 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVA 1114
+ + +++ I L + S L
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVR-SPLLQGGALSAMLDFF 756
Query: 1115 EAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFS 1174
+A S S + ++A + + +
Sbjct: 757 QALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVG 816
Query: 1175 LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRG 1234
+I+D+ N + R L+L + + + ++ A + + +V+
Sbjct: 817 QFIQDV----KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVIL-EAFSSPSEEVKS 871
Query: 1235 RMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294
A I + + + + + + +Y L+ I + A L
Sbjct: 872 AASYALGSISVGNLPEYLPFVLQEITS------QPKRQYLLLHSLKEIISSASVVGL--- 922
Query: 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354
P V + LL E + V+ CL L + L + S
Sbjct: 923 KPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPR----LKGYLISGSSYA 978
Query: 1355 RRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412
R + + I L K I L+ L D + RR AL+ F
Sbjct: 979 RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKT-LEDPDLNVRR-VALVTFNSAAHNKPS 1036
Query: 1413 LFEPYVIQMLPLLL------------VAFS------DQVVAVREAA-ECAARAMMSQLSA 1453
L + +LP L V D + +R+AA EC + S L
Sbjct: 1037 LIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR 1096
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
+ L + GL+D + K + +L ++ P + Q L ++V L T T
Sbjct: 1097 LDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCT-TKV 1154
Query: 1514 KVQSAGQ 1520
K S Q
Sbjct: 1155 KANSVKQ 1161
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 152 bits (385), Expect = 8e-38
Identities = 117/915 (12%), Positives = 278/915 (30%), Gaps = 101/915 (11%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 63
Query: 1555 YSLDILLQTTFV---NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
++L+ + + + S + ++ + S K
Sbjct: 64 SLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIAS-----K 118
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD--------LVSWLL 1663
+ LLP++ +L A A+ + E D ++ L
Sbjct: 119 GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 178
Query: 1664 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEH---ILPDIIRNCSHQRASVRDGYLTLF 1720
K + + RS A +++ + + H ++ + VR
Sbjct: 179 QFFKHSSPKI-RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRAL 237
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPL 1775
L + ++ ++ +L D++E+V A L E LP
Sbjct: 238 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPK 297
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835
L+P + +G+ + I ++ D + + E +
Sbjct: 298 LIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDD 357
Query: 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1895
++ ++R+ + + L + L+ L+
Sbjct: 358 DDDEIDDDDT---------ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 408
Query: 1896 SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1955
E + A+ E + LP +IP L + L D A R C LS
Sbjct: 409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 468
Query: 1956 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHAL 2012
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A
Sbjct: 469 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 528
Query: 2013 EDDQTSD--TALDGLKQI-LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN 2069
Q + D + + SV P + L+ + +N +
Sbjct: 529 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE----------D 578
Query: 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD-NQASI 2128
L +L L S + + ++ + +++++ +
Sbjct: 579 KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF 638
Query: 2129 RRSSAYLIGYFYKNSKLYLVD--EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186
+ L+ + + N+++ + + D +++ L + + +
Sbjct: 639 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ 698
Query: 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR 2246
V+P + +PI L +
Sbjct: 699 HVKP-----------------------------------CIADFMPILGTNLNPEFISVC 723
Query: 2247 EQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKGGI 2305
A +GE+ + ++ ++ + L+ II P + T+ +
Sbjct: 724 NNATWAIGEISIQMGIE-MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 782
Query: 2306 ALKPFLPQLQTTFIKCLQDSTRTV-RSSAALALGKLSALSTRVDPLVGDLLSSLQV--SD 2362
+ P L Q + L++ + SA + + +S ++ D + S
Sbjct: 783 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTM--ISVNPSGVIQDFIFFCDAVASW 840
Query: 2363 AGIREAILTALKGVL 2377
++ + +L
Sbjct: 841 INPKDDLRDMFCKIL 855
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (285), Expect = 7e-26
Identities = 119/816 (14%), Positives = 246/816 (30%), Gaps = 78/816 (9%)
Query: 1292 AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQLM 1347
P + + +L L + E + L + Q+ + + +
Sbjct: 38 LNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNI 97
Query: 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 1407
R + + + + + L L EGA A + +C
Sbjct: 98 GDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDS-EDYNTCEGAFGALQKIC 154
Query: 1408 EKLGRLFEPYVIQ-----MLPLLLVAFSDQVVAVREAAECAARAM---MSQLSAQGVKLV 1459
E + + V+ M+P L F +R A +Q +
Sbjct: 155 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 214
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+L D+ +++ + L + +L + IV + + D V
Sbjct: 215 TENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 274
Query: 1520 QTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+ ++ +P L+ L + ++ + +L + S +
Sbjct: 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
P HR + +D I E+ +R
Sbjct: 335 PRFHR------------------SRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKC 376
Query: 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS--GAAQGLSEVLAALGTVYFEH 1696
+A A+ L +E P ++ L + L V+ S ++E Y
Sbjct: 377 SAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 436
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN-YLQQVLPAILDGLADENESVRD 1755
++P +I+ S ++A VR + Q + YL+ ++ +L + D N+ V++
Sbjct: 437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 496
Query: 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
AA A L E T +P L + D + + + ++ +L D + +A + G L
Sbjct: 497 AACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN 555
Query: 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875
+ + + +L L V + + V++ V
Sbjct: 556 KPEYIQMLMPPLIQ-KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLV 614
Query: 1876 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP-----SIIPILSR 1930
KTL + M + VA L L LG + +I+ ++ +
Sbjct: 615 QKTLAQAMLNNAQPDQYEAP--DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ 672
Query: 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990
++D RQ L + A + + + +P + T L + V +A A
Sbjct: 673 CMQDKMPEVRQ-SSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIG 731
Query: 1991 TLFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL 2047
+ G++ I ++ L+ + T T L+
Sbjct: 732 EISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENT---------------------- 769
Query: 2048 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 2083
A +G L V + L + +++
Sbjct: 770 ------AITIGRLGYVCPQEVAPMLQQFIRPWCTSL 799
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 2e-23
Identities = 109/780 (13%), Positives = 246/780 (31%), Gaps = 78/780 (10%)
Query: 1093 PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAA 1150
+ ++ L P+ ++ + ++ DF + L + R +
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLS 66
Query: 1151 AEALATALDEYPDSI-QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR 1209
L + + + G + S + +IG + R + + + + A
Sbjct: 67 GLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI------RATVGILITTIASKGE 120
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--------DNVSLLFPIFEN 1261
++ P ++ L S L + + A I + ++++ P F
Sbjct: 121 LQNWPDLLPKLCS-LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ 179
Query: 1262 YLNKKASD-------------EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-D 1307
+ + + + + FT L ++P+V V + L
Sbjct: 180 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM 239
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL-MKSDKYGERRGAAFGLAGVV 1366
+L + + + + + ++Q QD+ + + +++ + L ++
Sbjct: 240 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI 299
Query: 1367 KGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 1426
L+ + + + E + + + + I+
Sbjct: 300 PVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDD 359
Query: 1427 VAF----SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1482
+ +R+ + A + + + + +LP L + L W K+S + +L
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419
Query: 1483 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASL 1538
GA+A Q + LP+++P L + L+D V+S L + + + + L
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
+ LL + D N + + T T P LA ++ + + +
Sbjct: 480 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLIL 539
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL---------VDPIPEVRSVAARAIGSLI 1647
+G + V + YI +L+P + + + P+ E S A A+ S
Sbjct: 540 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 599
Query: 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSG------------AAQGLSEVLAALGT---- 1691
E + V+ + L N + A LS + LG
Sbjct: 600 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ 659
Query: 1692 -VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750
V +IL + + + VR L L ++ + + +P + L E
Sbjct: 660 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
Query: 1751 ESVRDAALGAGHVLVEH-------YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803
SV + A A + Y L L+ + + +++ +G L
Sbjct: 720 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKT--LLENTAITIGRLG 777
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/288 (14%), Positives = 102/288 (35%), Gaps = 8/288 (2%)
Query: 2311 LPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAIL 2370
L Q+ +K Q T++ + L +L+ + L+ +L+ L+ D R
Sbjct: 10 LQQI-LQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLI-FVLTKLKSEDEPTRSLSG 67
Query: 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL 2430
LK +K ++ + V + S + + +R + ++ ++ E DL
Sbjct: 68 LILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL 127
Query: 2431 LQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---FLSILDRLKSSLKDEKFP 2487
L +L +L S + G+ + + L ++ + K
Sbjct: 128 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 187
Query: 2488 LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 2547
+R + + + ++ + Q+ + + ++ + D+ EVR+ AL + +
Sbjct: 188 IRSHAVACVNQFIISRTQALMLH---IDSFTENLFALAGDEEPEVRKNVCRALVMLLEVR 244
Query: 2548 PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQ 2595
++ H+ + + +D V L A + + + +
Sbjct: 245 MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 292
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.8 bits (177), Expect = 4e-13
Identities = 109/796 (13%), Positives = 239/796 (30%), Gaps = 97/796 (12%)
Query: 1037 PSYQAAIGSALNELCLGLQPNEVASALHGVYTK----DVHVRMACLNAVKCIPAVSTRSL 1092
P +A +G + + + L + + D + A++ I S L
Sbjct: 102 PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 161
Query: 1093 PENI------EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYD--------FGTDYSGLFKA 1138
++ + + A +++ + LF
Sbjct: 162 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFAL 221
Query: 1139 LSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198
VR AL L+ D + + + ++ +NV A +
Sbjct: 222 AGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV-ALEACEFWLT 280
Query: 1199 LALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPI 1258
LA + + LP ++ L+ + ++ D+ +L G + D+ D+ + P
Sbjct: 281 LAEQPICKDVLVRHLPKLIPVLV-NGMKYSDIDI---ILLKGDVEEDETIPDSEQDIRPR 336
Query: 1259 FENYLNK---------KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL 1309
F + D++ ++ + + A D + D+LL +
Sbjct: 337 FHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHI 396
Query: 1310 ----------------NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
+ + C+ ++ + + P L+ Q + K
Sbjct: 397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI-----QCLSDKKAL 451
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAA--TLREGLADRNSAKRREGALLAFECLCEKLG 1411
R + L+ Y L + + D N + +E A AF L E+
Sbjct: 452 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFATLEEEAC 510
Query: 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471
PY+ +L L+ AFS A + + K +L +
Sbjct: 511 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 570
Query: 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD----------------THPKV 1515
W + + L + C + +P V P
Sbjct: 571 WNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ 630
Query: 1516 QSAGQTALQQV-------------GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
A V G++ + ++++ + + D + S LL
Sbjct: 631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG 690
Query: 1563 TTFVNTVD--APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620
P +A +PI+ L A +G + + +M PYI ++
Sbjct: 691 DLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS--IQMGIEMQPYIPMV 748
Query: 1621 LPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVER 1675
L ++ +++ P + A IG L +E + +L++ N E+
Sbjct: 749 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 808
Query: 1676 SGAAQGLSEVLAALGTVYFEHILP--DIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQ 1732
A +G+ +++ + + + D + + + + +RD + + +G ++
Sbjct: 809 DSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWR 868
Query: 1733 NYLQQVLPAILDGLAD 1748
+ Q + + LA
Sbjct: 869 RFSDQFPLPLKERLAA 884
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 139 bits (349), Expect = 2e-33
Identities = 126/962 (13%), Positives = 286/962 (29%), Gaps = 165/962 (17%)
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556
+ L + ++ +T L++ + N L D N +
Sbjct: 3 TAEFAQLLENSILSPDQNIRLTSETQLKK----LSNDNFLQFAGLSSQVLIDENTKLEGR 58
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616
+ L T N + + R + + S E K QI N +
Sbjct: 59 ILAAL--TLKNELVSKDSVKTQQFAQRWITQVSPEAK---NQIKTNALTA---------- 103
Query: 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVER 1675
LV P + + AA+ I ++ + +P+L+ ++D ++ +
Sbjct: 104 -----------LVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 1676 SGAAQGLSEVLAALGTVY------FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSL 1727
+ L + + +IL I++ S VR L +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212
Query: 1728 GVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---- 1781
+ + ++ + + E+ V+ AA G ++ Y T P + A+
Sbjct: 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTI 272
Query: 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841
+ + N ++ +VE + + + +
Sbjct: 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-------------------------- 306
Query: 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS---LASSS 1898
Q+ L + + ++K+++P L+N L
Sbjct: 307 ------------------FPQSPLQSYNFAL----SSIKDVVPNLLNLLTRQNEDPEDDD 344
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
AG L + G +L ++ + + + + R+ + +M K Q
Sbjct: 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ 404
Query: 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 2018
++ + +P+I + D L+V+E+ + D + ++
Sbjct: 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI--------ADSVAESIDPQQHLPGVV 456
Query: 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 2078
L GL+ V T I + + LAE + ++
Sbjct: 457 QACLIGLQDHPKVATNCSWTII--------------NLVEQLAEATPSPIYNFYPALVDG 502
Query: 2079 LLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGY 2138
L+ A D + + + +A + + E +++ + ++ +
Sbjct: 503 LIGAANRIDNEFNA--RASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560
Query: 2139 FYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198
L + N+++ L ++ S S+ A + + +++
Sbjct: 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM------------GLFFRLLEK 608
Query: 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIE 2258
S + + G K L+ P L+ L + + A+G I
Sbjct: 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS-ITAVGFIADIS 667
Query: 2259 VTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317
+ E+ + + + L ++I + ++K A+LS I G P+L +
Sbjct: 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMAL 727
Query: 2318 FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV- 2376
+ A K+ EA+L A G+
Sbjct: 728 CVAAQNTKPENGTLEALDYQIKV-------------------------LEAVLDAYVGIV 762
Query: 2377 --LKHAGKSVSSAVKI---RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 2431
L +++ V + V +D + +D +A ++G ++ DG +
Sbjct: 763 AGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822
Query: 2432 QE 2433
+
Sbjct: 823 GQ 824
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.6 bits (215), Expect = 1e-17
Identities = 91/786 (11%), Positives = 214/786 (27%), Gaps = 76/786 (9%)
Query: 1265 KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCL 1324
+ S+ + L + + F G ++ L ++ K+ + L + N
Sbjct: 22 RLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFA 81
Query: 1325 SPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 1384
+ + EA + + S + AA +A + + + +
Sbjct: 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIAD-IELPHGAWPELMKIMV 140
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL-----VAFSDQVVAVREA 1439
+ + +LLA +CE + V +L+ ++ AVR A
Sbjct: 141 DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLA 200
Query: 1440 AECAARAMMSQLSAQ-----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
A A + + ++ + + + + + ++ L + +
Sbjct: 201 ALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260
Query: 1495 QCLPKIVPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKN--------------------P 1533
+ + + LT + + KV S + +
Sbjct: 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS 320
Query: 1534 EIASLVPTLLMGLTDPN-----DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588
I +VP LL LT N D S+ + V
Sbjct: 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
++AA + + Y+ LP + ++ D +V+ A IG +
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440
Query: 1649 GMGE-----ENFPDLVSWLLDALKSDNSNVERSGA-----AQGLSEVLAALGTVYFEHIL 1698
+ E ++ P +V L L+ + L+E + ++ ++
Sbjct: 441 SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALV 500
Query: 1699 PDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
+I + R + + + ++D L +
Sbjct: 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560
Query: 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816
+ +L + I + + L+G + + +
Sbjct: 561 LT----LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED 616
Query: 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP 1876
A + G+ + L L + V V A+ I +
Sbjct: 617 DVFYAISALAASLGKGFEKYL-----ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671
Query: 1877 KTLKEIMPVLMNTLISSLASSSSER--RQVAGRALGELVRKLGE---RVLPSIIPILSRG 1931
+ + +MN L +++ ++ R + G++ +G L I+ +
Sbjct: 672 EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA 731
Query: 1932 LKDPSASR-----------RQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALCDSI 1978
+ + V ++A L ++ + I D
Sbjct: 732 QNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ 791
Query: 1979 LEVRES 1984
L ++
Sbjct: 792 LYSEDA 797
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.1 bits (180), Expect = 2e-13
Identities = 97/708 (13%), Positives = 218/708 (30%), Gaps = 77/708 (10%)
Query: 1135 LFKALSHSN-YNVRLAAAEALATALDEYP---DSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
+ NV+ A+ AL + ++ S + + ++ +
Sbjct: 139 MVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+A +L + + + + ++ A + +V+ I+ K+
Sbjct: 199 LAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
+ A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTI--ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
+++ V + L+ L + +D + D + A L + G
Sbjct: 317 FALSSIKDVVPNLLNLLTRQNEDP-------------EDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAF 1429
L+ E ++ + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEPVL---EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
+DQ + V+E + ++ Q + V+ + L GL+D S ++
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINL 480
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQVGSVIKN------- 1532
+ A S + ++ D +++ +AL + +
Sbjct: 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA 540
Query: 1533 -------PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL-------ALLV 1578
++ + LT + + L + T + L+
Sbjct: 541 SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMG 600
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
++ SA + + + + + K Y+ P + K L V
Sbjct: 601 LFFRLLEKKDSAFIEDDVFYAISALAASL--GKGFEKYLETFSPYLLKALNQVDSPVSIT 658
Query: 1639 AARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYF 1694
A I + + E+ +++ L + + N+ E + ++ + +G F
Sbjct: 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-F 717
Query: 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVR 1754
L DI+ C + P + ++ +Y +VL A+LD +
Sbjct: 718 IPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766
Query: 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
D + Y T + ED +++V L+GD+
Sbjct: 767 DK-----PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 9e-05
Identities = 83/688 (12%), Positives = 193/688 (28%), Gaps = 64/688 (9%)
Query: 883 SQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVD 942
Q +LV + +L + + G + E + L + + I + E +
Sbjct: 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM------EREGE 221
Query: 943 SDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF--TFVFPIIERIL--LSPK 998
+ + V A E + + L + + ++ + + + K
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 999 RTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNE 1058
+ + + + + S L + S + + + LN L + E
Sbjct: 282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341
Query: 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE 1118
+ A + V + A S+ + +
Sbjct: 342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401
Query: 1119 DIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIR 1178
+ Y ++ + V+ A + D +SI L +
Sbjct: 402 KVQRTYYVHQALPSI--LNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQHLPGVVQA 458
Query: 1179 DIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM----TFLISRALADTNADVRG 1234
+ D+ I + A+ + + + D + R
Sbjct: 459 CLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARA 518
Query: 1235 RMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDL------VREGVVIFTG 1285
+A +++ + + + L + S +E ++E
Sbjct: 519 SAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578
Query: 1286 ALAKHLAKDDPKVHAVVDKLLDV-----LNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVS 1340
LA + K V V D L+ + S ++ V +S L S+ +
Sbjct: 579 VLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638
Query: 1341 RLLDQLMKS--DKYGERRGAAFGLAGVVKGFGISSLKKY--GIAATLREGLADRNSAKR- 1395
L+K+ A G + ++Y + L + +++ N+ +
Sbjct: 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARREL 698
Query: 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455
+ L F + +G F PY+ ++ L + A + + A ++ +
Sbjct: 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVL-----EA 753
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPK 1514
V ++ GL DK P+ L + I + +V D
Sbjct: 754 VLDAYVGIVAGLHDK-------------------PEALFPYVGTIFQFIAQVAEDPQLYS 794
Query: 1515 VQSAGQTALQQVG---SVIKNPEIASLV 1539
+ + A+ +G ++ + I
Sbjct: 795 EDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 130 bits (327), Expect = 7e-31
Identities = 125/904 (13%), Positives = 272/904 (30%), Gaps = 107/904 (11%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 1165 IQGSLSTLFSL-------YIRDI---GLGGDNVDAGWLGRQGIALALHSAADV-LRTKDL 1213
I+ + +++ LG + + + A +
Sbjct: 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYR-----PSSASQCVAGIACAEIPVNQW 126
Query: 1214 PVIMTFLISRALA-DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272
P ++ L++ ++ ++ L A I + + + + EE
Sbjct: 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186
Query: 1273 YDLVREGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ V+ + + + H ++ + + P V+ A L +M
Sbjct: 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246
Query: 1330 SMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ L +++ K A G+ + + ++ +A E
Sbjct: 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGI----EFWSNVCDEEMDLAIEASEAAE 302
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV----AVREAAECAA 1444
E + + Y++ +L L + +AA
Sbjct: 303 Q----------GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPKIVPK 1503
+ + V VLP + + +++ WR + ++V G + P QL + + +P
Sbjct: 353 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412
Query: 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLD 1558
L E++ D V+ + ++ ++ I A L+ L+ GL+
Sbjct: 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCW 472
Query: 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618
A L +K + +
Sbjct: 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR--PDGHQNNLRSSAYE 530
Query: 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA 1678
L+ VK D P V+ + L + + S + N +S
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERL------QQVLQMESHIQSTSDRIQFNDLQSLL 584
Query: 1679 AQGLSEVLAALGTVYFEHILPDIIRNC------SHQRASVRDGYLTLFKYLPRSLGVQFQ 1732
L VL + I ++ + + V++ L L LG +F
Sbjct: 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL 644
Query: 1733 NYLQQVLPAILDGLADENES-VRDAALG-------AGHVLVEHYATTSLPLLLPAVEDGI 1784
Y++ P + GL + E V AA+G A + + + LLL + +
Sbjct: 645 KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN-- 702
Query: 1785 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844
N + ++ + + GD+ + G + + ++ L + + +
Sbjct: 703 ENVHRSVKPQILSVFGDIALAI----------------GGEFKKYLEVVLNTLQQASQAQ 746
Query: 1845 VLAALYMVRSDVSLSVRQAALHVWKTIV-------ANTPKTLKEIMPVLMN-----TLIS 1892
V + Y D +R++ L + IV N + + P + I+
Sbjct: 747 VDKSDY-DMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA 805
Query: 1893 SLASSSSERRQVAGRALGELVRKLGERVL------PSIIPILSRGLKDPSASRRQGVCIG 1946
+ A +G+L G+ VL P I +L+ G + + +
Sbjct: 806 GDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWA 865
Query: 1947 LSEV 1950
E+
Sbjct: 866 TKEL 869
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.4 bits (220), Expect = 4e-18
Identities = 103/830 (12%), Positives = 259/830 (31%), Gaps = 106/830 (12%)
Query: 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQL 1481
+L + A++C A +++ ++P L+ + + K+S+++
Sbjct: 94 YVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153
Query: 1482 LGAMA-YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--------N 1532
+G + P+QL +I+ + + + P A + + ++
Sbjct: 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA-ATNALLNSLEFTKANFDKE 212
Query: 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRGLRERS 1589
E ++ + P+ + + L + ++ L I ++
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
E + + N+C D + + E + P + A A+ L+
Sbjct: 273 DEVALQGIEFWSNVC-------DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV-- 323
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR 1709
++ + D+ N A L + H+LP I + +
Sbjct: 324 ---PILTQTLTKQDENDDDDDWNP-CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPD 379
Query: 1710 ASVRDGYLTLFK-YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768
RD + F L Q + + Q +P +++ + D + VRD A + E
Sbjct: 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 1769 ATTSLP-LLLPAVEDGIFN---DNWRIRQSSVELLGDLLFKV--AGTSGKALLEGGSDDE 1822
++ + L + + R+ + L A E +
Sbjct: 440 PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499
Query: 1823 GASTEAHGRAIIEVLGR--DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880
+S E + ++E R +N + ++ Y ++ + + + + L+
Sbjct: 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQ 559
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG--------ERVLPSIIPILSRGL 1932
+++ + + +S ++ + + L ++RK+ + V+ S++ +
Sbjct: 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFST 1991
+ + + + L +M+ P + L + + +V +A
Sbjct: 620 GSGGVQEDALMAVS---TLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1992 LFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048
L ++ DE++ LL L ++ SV+ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHR----------SVKPQIL------------ 714
Query: 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE 2108
G +A G +L +L L A + + E
Sbjct: 715 ------SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RE 763
Query: 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168
+ +++G+ +Q ++ + ++S + + D D T
Sbjct: 764 SCLEAYTGIVQGLKGDQENVHPDVMLVQPRV------------EFILSFIDHIAGDEDHT 811
Query: 2169 --TVAAAWEALSRVVASVPKEV------QPSYIKVIRDAISTSRDKERRK 2210
VA A + + + K+V +P +++ + S+ + +
Sbjct: 812 DGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRR-SKTNKAKT 860
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 7e-04
Identities = 42/354 (11%), Positives = 96/354 (27%), Gaps = 86/354 (24%)
Query: 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 2294
L+ +S E A ++ L+ + + L
Sbjct: 7 LEKTVSPDRLELEAA------------QKFLERAAV----------------ENLPTFLV 38
Query: 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK-LSALSTRVDPLVGD 2353
LS ++ G + R +A L + L++ +
Sbjct: 39 ELSRVLANPGNSQ--------------------VARVAAGLQIKNSLTSKDPDIKAQYQQ 78
Query: 2354 LLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAA 2412
++ + ++ +L L + + SA+
Sbjct: 79 RWLAIDANARREVKNYVLHTL----------------------------GTETYRPSSAS 110
Query: 2413 SILG-IMSQCMEDGQLADLLQELLNLASSP--SWAARHGSVLVFATFLRHNPSAISMSPL 2469
+ I + Q +L+ +L+ ++P + + ++ + +
Sbjct: 111 QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ-LQDK 169
Query: 2470 FLSILDRLKSSLKDE--KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHD 2527
IL + ++ E ++ A+T AL L ++ + I+ V A
Sbjct: 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLN-SLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 2528 DSSEVRRRALSALKSVAKANPSAIMVHV-ALFGPALAECLKDGSTPVRLAAERC 2580
+ VR AL L + + ++ E +K V L
Sbjct: 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (250), Expect = 5e-22
Identities = 97/665 (14%), Positives = 206/665 (30%), Gaps = 110/665 (16%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+ L+ L ++ + + +S++ L +A + + +++P LT+ + D V A
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTIYDEDE-VLLAL 68
Query: 1520 QTALQQVGSVIKNPEIA-SLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVDAPSL 1574
L +++ PE L+P L T + SL + + ++A
Sbjct: 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA--- 125
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
VP+V R ++ A + P+ L + + D P
Sbjct: 126 -HFVPLVKRLAGGDWFTSRTSACGLFSVCY-----PRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 1635 VRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
VR AA +G + + +N +++ + + +V ++
Sbjct: 180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL 239
Query: 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 1753
++P + + + S R Y+ K+ V + ++PA + + D V
Sbjct: 240 EALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1754 RDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSSVELLG-------- 1800
R AA E+ + + +LP +++ + + N ++ + ++
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1801 -DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
+ + + L + + + R +L A+ + D
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-E 1918
VR A + + + L + ++ L R+ A L +LV K G E
Sbjct: 418 VRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475
Query: 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978
+IIP + DP+ R ++ + G+
Sbjct: 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT------------------ 517
Query: 1979 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038
++PT+L D + +VR
Sbjct: 518 -----------------------KHMLPTVLRMAGD------------PVANVRFNV--- 539
Query: 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098
A +L + + + P L D D+DV+ A+EA
Sbjct: 540 ---------------AKSLQKIGPILDNST--LQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Query: 2099 ETVTL 2103
++L
Sbjct: 583 TVLSL 587
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.8 bits (239), Expect = 1e-20
Identities = 102/619 (16%), Positives = 201/619 (32%), Gaps = 53/619 (8%)
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
A L + L + + R ++ + LG E ++LP L D+ + A
Sbjct: 13 AVLIDELRNEDVQLRLN-SIKKLSTIALALG--VERTRSELLPFLTDTIYDEDEVLLALA 69
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPK 1499
E + V +LP L + + +V+ L A++ +P L
Sbjct: 70 EQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV- 128
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
P + + +++ + + A L +D + +
Sbjct: 129 --PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAAS 186
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L + ++P+ + + A + N+ L+ + L
Sbjct: 187 KLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEAL 242
Query: 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679
++P +++ D VR + A L + +G E + L D R+ A+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302
Query: 1680 QGLSEVLAALGTVYFEHILPDIIRNCSHQRA---SVRDGYLTLFKYLPRSLGVQFQNYLQ 1736
+ E L E+++ I C + + + S + N ++
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSS 1795
+LP L L DE VR + + E LLPA+ + + WR+R +
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RS 1854
+E + L LG + +E L +L M
Sbjct: 423 IEYMPLL-------------------------------AGQLGVEFFDEKLNSLCMAWLV 451
Query: 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
D ++R+AA K +V K + ++ +++ + R + L
Sbjct: 452 DHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509
Query: 1915 KLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973
G+ + ++P + R DP A+ R V L ++ S L E+ P +
Sbjct: 510 VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKL 566
Query: 1974 LCDSILEVRESAGLAFSTL 1992
D ++V+ A A + L
Sbjct: 567 TQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.9 bits (234), Expect = 4e-20
Identities = 101/665 (15%), Positives = 205/665 (30%), Gaps = 93/665 (13%)
Query: 1887 MNTLISSLASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCI 1945
+ LI L + + R + + L + LG ER ++P L+ + D V +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-----VLL 66
Query: 1946 GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 2005
L+E QL +F + G + + ++
Sbjct: 67 ALAE--------QLGTFTTLVG-----------------------------GPEYVHCLL 89
Query: 2006 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 2065
P L ++T VR AV +L A++
Sbjct: 90 PPLESLATVEETV------------VRDKAV------------------ESLRAISHEHS 119
Query: 2066 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125
P +P + G D ++ A + L D+
Sbjct: 120 PSDL--EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 177
Query: 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185
+RR++A +G F K +L V +I L SD + A EA + +P
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKS--EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 2186 KEVQPSYIKVIRDAISTSRDKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243
+E + + + + R L L+P F + A
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLSIIIRK 2302
E+R A+ + E E S + ++ P I+ + D + + +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD 2362
G L L +K R S + ++ + L+ ++ + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 2363 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCM 2422
+R AI+ + + G ++ S+ + +R +A S L + +
Sbjct: 416 WRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 2423 -EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481
++ A ++ ++L ++ P++ R ++ +L +
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VCGQDITTKHMLPTVLRMA 528
Query: 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 2541
D +R K+L +I N+T+ ++ + D +V+ A AL
Sbjct: 529 GDPVANVRFNVAKSLQ-----KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 2542 SVAKA 2546
++ A
Sbjct: 584 VLSLA 588
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 4e-18
Identities = 74/545 (13%), Positives = 155/545 (28%), Gaps = 21/545 (3%)
Query: 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113
L +A G +LP L + D+D + +LA++ TLV E V L
Sbjct: 31 IKKLSTIALALGVERT--RSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88
Query: 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 2173
+ L + +R + + ++ + + L T+ +A
Sbjct: 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSA 146
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK-KGGPILIPGFCLPKALQPLLP 2232
S V V+ + R+ S RR L ++P
Sbjct: 147 CGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIP 206
Query: 2233 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAI 2292
+F +R A + ++ ++ L+ V+P R + V
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266
Query: 2293 LSTLSIIIRKGGIALK-PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLV 2351
+ + P L ++ + L + + ++
Sbjct: 267 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326
Query: 2352 GDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSA 2411
+ + ++ ++ A+ + + G+ GK + + ++ + +S
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386
Query: 2412 ASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFL 2471
+ LL ++ LA W R + F
Sbjct: 387 LDC--VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF-----FD 439
Query: 2472 SILDRLKSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 2530
L+ L + D + +REA+T L +L+ I+ V++ D +
Sbjct: 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLV-----EKFGKEWAHATIIPKVLAMSGDPNY 494
Query: 2531 EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590
R L + +++ I L P + D VR + +
Sbjct: 495 LHRMTTLFCINVLSEVCGQDITTKHML--PTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552
Query: 2591 SEYIQ 2595
S
Sbjct: 553 STLQS 557
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (216), Expect = 6e-18
Identities = 94/632 (14%), Positives = 188/632 (29%), Gaps = 67/632 (10%)
Query: 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192
+ L L + + +RL + + L+T
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLST------------------------------------ 36
Query: 1193 GRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA-GIMIIDKHGRDN 1251
IALAL + R++ LP + + +V + G G +
Sbjct: 37 ----IALAL--GVERTRSELLPFLTDTI------YDEDEVLLALAEQLGTFTTLVGGPEY 84
Query: 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT 1311
V L P E+ + EE VR+ V A++ + D + H V + +
Sbjct: 85 VHCLLPPLESLA----TVEETV--VRDKAVESLRAISHEHSPSDLEAH-FVPLVKRLAGG 137
Query: 1312 PSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371
+ + S + + + L D RR AA L K +
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197
Query: 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS- 1430
++K I +D + R E V+ L S
Sbjct: 198 DNVKSE-IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256
Query: 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
V + +A+ +++ + +L+K + R S A
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSAD 315
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+ + + +I+P + E+++D + V+SA + + + ++ + L +
Sbjct: 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375
Query: 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
I + L+ + L E + + A + +
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSD 1669
+ L LVD + +R A + L+ G+E ++ +L
Sbjct: 436 EFFDEK---LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728
N R ++ + G +H+LP ++R A+VR + + L
Sbjct: 493 NYLH-RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551
Query: 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGA 1760
+V P + D++ V+ A A
Sbjct: 552 NS--TLQSEVKPILEKLTQDQDVDVKYFAQEA 581
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.8 bits (213), Expect = 2e-17
Identities = 89/624 (14%), Positives = 195/624 (31%), Gaps = 58/624 (9%)
Query: 1964 DELIP--TIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDT 2020
D L P + L + +++R ++ ST+ + G++ E++P L + D+
Sbjct: 7 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 66
Query: 2021 ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL 2080
AL A LG + G ++ +LP L
Sbjct: 67 AL-------------------------------AEQLGTFTTLVG--GPEYVHCLLPPLE 93
Query: 2081 SAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV-GDNQASIRRSSAYLIGYF 2139
S ++ V+ A E+ ++ +E+ L+K + G + + R S+ L
Sbjct: 94 SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVC 153
Query: 2140 YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 2199
Y + E + L SD AA L + + S I +
Sbjct: 154 YPRVSSAVKAE---LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN 210
Query: 2200 ISTSRDKERRKKKGGPILIPGFCLPKA--LQPLLPIFLQGLISGSAELREQAALGLGELI 2257
+++ R + LP+ ++P Q S +R A EL
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ 270
Query: 2258 EVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII-IRKGGIALKPFLPQLQT 2316
+ + K ++P ++ D +A + Q+
Sbjct: 271 KAVGPEITKTDLVPA---FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP 327
Query: 2317 TFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376
+ + D+ + V+S+ A + LS + + + + L L E L + +
Sbjct: 328 CIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNL 387
Query: 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLN 2436
+ + + +L VR++ + +++ + + L L
Sbjct: 388 DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCM 447
Query: 2437 -LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 2495
+A R + + + + +I+ ++ + D + R +
Sbjct: 448 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHA----TIIPKVLAMSGDPNYLHRMTTLFC 503
Query: 2496 LGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 2555
+ L +L +V+ D + VR +L+ + ++
Sbjct: 504 INVLS-----EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQ 556
Query: 2556 ALFGPALAECLKDGSTPVRLAAER 2579
+ P L + +D V+ A+
Sbjct: 557 SEVKPILEKLTQDQDVDVKYFAQE 580
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 2e-12
Identities = 83/574 (14%), Positives = 197/574 (34%), Gaps = 29/574 (5%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDG 1715
++ L+D L++++ + R + + LS + ALG +LP + + +
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775
L + G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA-----LLEGGSDDEGASTEAHG 1830
+ + +W ++S L + + ++ KA SDD A
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSL--SVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888
+ E + + V + + + S+++ L V + +++ ++M
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 1889 TLISSLASSSSERRQVAGRALGELVR-KLGERVLPSIIPILSRGLKDPSASRRQGVCIGL 1947
TL + S R + EL + E ++P +KD A R +
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 1948 SEVMASAGKSQLLSFM-DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
E + + + +++P I+ + D+ V+ + L G E +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN----------AHA 2056
L A D+ + L+ + + V + + L+ +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 2057 LGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DEEGVESLVS 2115
+ LA G F + ++ + D ++ A + + E +++
Sbjct: 426 MPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
++L GD R ++ + I + + +M+ T++ + D + +
Sbjct: 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT--TKHMLPTVLRMAGDPVANVRFNVAK 541
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209
+L ++ + S +K I + ++ +D + +
Sbjct: 542 SLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 3e-12
Identities = 86/550 (15%), Positives = 170/550 (30%), Gaps = 38/550 (6%)
Query: 1146 VRLAAAEALATALD-----EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
V LA AE L T EY + L +L ++ + R +
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV-------------RDKAVES 110
Query: 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFE 1260
L + + DL L+ R R + + + L F
Sbjct: 111 LRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1261 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAV 1320
N + VR G AK L + D ++ ++ + ++V+
Sbjct: 171 NLCSDDTPM------VRRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLA 223
Query: 1321 SSCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ Q + Q++ LV L Q + + R A + K G K +
Sbjct: 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV 283
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
A A+ R A + CE L V ++ +L + V +
Sbjct: 284 PAFQNL--MKDCEAEVRAAASHKVKEFCENLSADCRENV--IMSQILPCIKELVSDANQH 339
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY---CAPQQLSQC 1496
+ A +++ LS K L L + + V+L + Q
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY 1555
++P + E+ D +V+ A + + + + +L M D +
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIRE 459
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ L+ + A ++P V + + + ++++E
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC----INVLSEVCGQDI 515
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675
+LP V ++ DP+ VR A+++ + + V +L+ L D +
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
Query: 1676 SGAAQGLSEV 1685
A + L+ +
Sbjct: 576 YFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 5e-12
Identities = 93/591 (15%), Positives = 193/591 (32%), Gaps = 40/591 (6%)
Query: 1069 KDVHVRMACLNAVKCIPAVSTRSLPENI--EVSTSLWIAVHDPEKSVAEAAEDIWDRYGY 1126
+DV +R LN++K + ++ E E+ L ++D ++ + AE +
Sbjct: 22 EDVQLR---LNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL 78
Query: 1127 DFGTDYSG-----LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIG 1181
G +Y L + VR A E+L E+ S + L R
Sbjct: 79 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH--SPSDLEAHFVPLVKRLA- 135
Query: 1182 LGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGI 1241
W + A L S + + + +D VR +
Sbjct: 136 ------GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
DNV + ASDE+ + + L + V
Sbjct: 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLA---VEACVNIAQLLPQEDLEALV 243
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAF 1360
+ L S V+ V+ + L +++ E T + LMK + R A+
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASH 303
Query: 1361 GLAGVVKGFGISSLKKYGIAATL--REGLADRNSAKRREGALLAFECLCEKLGR--LFEP 1416
+ + + ++ L + L + + L LG+ E
Sbjct: 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 363
Query: 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
+ L L + + + +C + + Q + +LP++++ ED WR +
Sbjct: 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRL 420
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNPEI 1535
+ ++ + +A + K+ L D ++ A + L+++ K
Sbjct: 421 AIIEYMPLLAGQLGVEFFDE--KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH 478
Query: 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595
A+++P +L DPN + + + + ++P V R + A +
Sbjct: 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
A+ + + ++ + P ++K+ D +V+ A A+ L
Sbjct: 539 VAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 3e-09
Identities = 74/540 (13%), Positives = 149/540 (27%), Gaps = 31/540 (5%)
Query: 1004 DDVLQMLYKHMDPLLPL-----PRLRMISVLYHVLGV-VPSYQAAIGSALNELCLGLQPN 1057
D+VL L + + L ++ L + V + +L + P+
Sbjct: 62 DEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 1058 EVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENI-EVSTSLWIAVHDPEKSVA 1114
++ + + + + +A R E+ D V
Sbjct: 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVR 181
Query: 1115 EAAEDIWDRYGYDFGTDY------SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGS 1168
AA + D S +VRL A EA P
Sbjct: 182 RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---D 238
Query: 1169 LSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADT 1228
L L +R + + L ++ +T +P +
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298
Query: 1229 NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288
A + D +S + P + ++ + + L+
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA------LASVIMGLS 352
Query: 1289 KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK 1348
L KD+ H + L + + E +S+ + + + +L +
Sbjct: 353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412
Query: 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408
K+ R + + G+ + +L + RE A + L E
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN--SLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGL 1467
K G+ E ++P +L D R + K +LP++L+
Sbjct: 471 KFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA 528
Query: 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527
D + + + L + Q ++ P L ++ D V+ Q AL +
Sbjct: 529 GDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 8e-07
Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 10/192 (5%)
Query: 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKE 2207
D++ I+ LI L + D + + LS + ++ + + + + D I D+
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEV 64
Query: 2208 RRK-KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK 2266
+ P+ + LLP +R++A L + S L+
Sbjct: 65 LLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLE 124
Query: 2267 EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST 2326
+ PL++ + + +++ S+ + A+K L Q F D T
Sbjct: 125 AHFV----PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQY---FRNLCSDDT 177
Query: 2327 RTVRSSAALALG 2338
VR +AA LG
Sbjct: 178 PMVRRAAASKLG 189
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 7e-05
Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 12/190 (6%)
Query: 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVF 2453
+VL D + ++D +R+++ L ++ + + L L
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQL 72
Query: 2454 ATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV 2513
TF + L L L+S E+ +R+ + ++L + + +
Sbjct: 73 GTFTTLVGGPEYVHCL----LPPLESLATVEETVVRDKAVESLRAISHE------HSPSD 122
Query: 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPV 2573
+ +V L R + L + P A D + V
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGL--FSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 2574 RLAAERCAVH 2583
R AA
Sbjct: 181 RRAAASKLGE 190
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 9e-19
Identities = 60/414 (14%), Positives = 131/414 (31%), Gaps = 42/414 (10%)
Query: 1633 PEVRSVAARAIGSLIR---------------GMGEENFPDLVSWLLDALKSDNSNVERSG 1677
R A I + + + ++ +++L L ++ S
Sbjct: 50 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--RPSS 107
Query: 1678 AAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733
A+Q ++ + A V L + N + + Q Q+
Sbjct: 108 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 167
Query: 1734 YLQQVLPAILDGLADENES--VRDAALGAGHVLVEHYATTSLPLL-----LPAVEDGIFN 1786
++L AI+ G+ E S V+ AA A +E + V +
Sbjct: 168 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 227
Query: 1787 DNWRIRQSSVELLGD-------LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839
+ R+R ++++ L + G + A+ + G +
Sbjct: 228 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287
Query: 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899
++ + + + + + H K + L I+ + +
Sbjct: 288 EEMDLAI------EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 341
Query: 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959
+ AG L L + ++P ++P + +K+P R + ++ SQL
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401
Query: 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + +PT+ + D + VR++A + + AI D + LL L
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 1e-16
Identities = 61/461 (13%), Positives = 141/461 (30%), Gaps = 34/461 (7%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 11 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 70
Query: 1165 IQGSLSTLFS-------LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM 1217
I+ + +++ L + A + P ++
Sbjct: 71 IKAQYQQRWLAIDANARREVKNYVLQT-LGTETYRPSSASQCVAGIACAEIPVNQWPELI 129
Query: 1218 TFLISRALAD-TNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLV 1276
L++ + ++ L A I + + + + EE + V
Sbjct: 130 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 189
Query: 1277 REGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--- 1330
+ + + + H ++ + + P V+ A L +M
Sbjct: 190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249
Query: 1331 -MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
M+ + + + MKSD + V + +
Sbjct: 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-------------MDLAIEA 296
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
+A++ + + + P + Q L D +AA + +
Sbjct: 297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 356
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVL 1508
V VLP + + +++ WR + ++V G + P QL + + +P L E++
Sbjct: 357 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 416
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTD 1548
D V+ + ++ ++ I + LL L +
Sbjct: 417 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.2 bits (196), Expect = 9e-16
Identities = 63/452 (13%), Positives = 144/452 (31%), Gaps = 33/452 (7%)
Query: 2076 LPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 2135
L +L D A++ E + + L L N R ++
Sbjct: 2 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP--GNSQVARVAAGLQ 59
Query: 2136 IGYF-----------YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS- 2183
I Y+ L + A + ++ +++ ++A + ++ + +
Sbjct: 60 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 119
Query: 2184 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL------IPGFCLPKALQPLLPIFLQG 2237
+P P I + ++ E K+ + I L +L +QG
Sbjct: 120 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQG 179
Query: 2238 LIS--GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 2295
+ S ++ A L +E T KE ++ +V+ A L
Sbjct: 180 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 239
Query: 2296 LSIIIRKGGIALKPFLPQLQTT-FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354
L I+ ++ ++ I+ ++ V + + +
Sbjct: 240 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 299
Query: 2355 LSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI 2414
+ + + AL+ ++ + + + + DD + +A
Sbjct: 300 AEQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDDDWNPCKAAGVC 350
Query: 2415 LGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 2474
L +++ C ED + +L + +P W R +V+ F L P + PL + +
Sbjct: 351 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAM 409
Query: 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQS 2506
L +KD +R+ + +GR+ ++
Sbjct: 410 PTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 3e-10
Identities = 65/492 (13%), Positives = 133/492 (27%), Gaps = 53/492 (10%)
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRR 1940
E++ +L T+ S + A + L + L + +L+ A R
Sbjct: 1 ELITILEKTV-----SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVA--R 53
Query: 1941 QGVCIGLSEVMA---SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+ + + K+Q + R + + +L+ +
Sbjct: 54 VAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE--------TYRP 105
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057
A + + +Q + + + + P+ + L A
Sbjct: 106 SSASQCVAGIACAEIPVNQWPELIPQLVANVTN-------PNSTEHMKESTLEAIGYICQ 158
Query: 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117
E N L I+ + +++ + + + + +
Sbjct: 159 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 218
Query: 2118 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST----LIVLLSDSDSTTVAAA 2173
Q R + K LY M I +
Sbjct: 219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 278
Query: 2174 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 2233
E S V E ++ P F ALQ L+PI
Sbjct: 279 IEFWSNVCDEEMDLAI--------------EASEAAEQGRPPEHTSKFYAKGALQYLVPI 324
Query: 2234 FLQGLISGSAELREQ--AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291
Q L + + + ++ ++P P I+ W+ + A
Sbjct: 325 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA 384
Query: 2292 ILSTLSIIIRK-GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-------AL 2343
+ I+ LKP + Q T I+ ++D + VR +AA +G++
Sbjct: 385 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 444
Query: 2344 STRVDPLVGDLL 2355
+ PL+ L+
Sbjct: 445 DVYLAPLLQCLI 456
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 3e-07
Identities = 57/474 (12%), Positives = 130/474 (27%), Gaps = 60/474 (12%)
Query: 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267
++LP + L R LA+ R+ AG+ +N L K
Sbjct: 27 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGL----------------QIKNSLTSKD 68
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPL 1327
D + + D V + + S C++ +
Sbjct: 69 PDIK-------------AQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 115
Query: 1328 MQS------MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+ + P LV+ + + A + + + + A
Sbjct: 116 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 175
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
++ + S + A A E E ++ ++ A VR A
Sbjct: 176 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235
Query: 1440 AECAARAMMS----QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495
A +MS + + ++ ++ ++ + +
Sbjct: 236 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 295
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
+ + ALQ + P + + D + +
Sbjct: 296 ASEAAEQGRPPEH-----TSKFYAKGALQYL-----VPILTQTLTKQDENDDDDDWNPCK 345
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ + + + ++P + ++ + A G + EP + P
Sbjct: 346 AAG-VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKP 403
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD-----LVSWLLD 1664
+ +P + +++ DP VR AA +G + + E D L+ L++
Sbjct: 404 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (151), Expect = 6e-10
Identities = 98/806 (12%), Positives = 238/806 (29%), Gaps = 107/806 (13%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
+++ ++ AI S+ + +P L+S L L +D+ G +
Sbjct: 92 PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVT-NKGVLTVAHSI 150
Query: 1686 LAALGTVY---------------FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
++ F ++++ Q + + ++
Sbjct: 151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANEN---------NKASLNI 201
Query: 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1790
+ L ++ D + + + G + Y + S PLL E + +
Sbjct: 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIK 261
Query: 1791 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850
++ S EL+ + G + V +L
Sbjct: 262 VKSSIQELVQLYTTRYEDVFGPMI-------NEFIQITWNLLTSISNQPKYDILVSKSLS 314
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS------------SLASSS 1898
+ + + + + T + + + + + S +
Sbjct: 315 FLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDT 374
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIP----ILSRGLKDPSASRRQGVCIGLSEVMASA 1954
RR+ L EL K V + + + + DPS + + +
Sbjct: 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAI 434
Query: 1955 GKS-------------QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001
+ ++ F + I T+ + +R A T +
Sbjct: 435 NGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL 494
Query: 2002 DEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGA 2059
E++P L L+ D+ A +++IL++R + P + + ++
Sbjct: 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKNL 553
Query: 2060 LAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119
+A + G + L+ ++ V ++++ + + + + + +
Sbjct: 554 IALILKHGSSPEKLAENEFLMRSI----FRVLQTSEDSIQPLFPQL----LAQFIEIVTI 605
Query: 2120 GVGDNQASIRRSSAY-----LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAW 2174
+ + ++ Y + + LVD T+ V
Sbjct: 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665
Query: 2175 EALSRVVASVPKEVQPSYIKVIRDAISTSRDK-------ERRKKKGGPILIPGFCLPKAL 2227
+ A++P+ ++P ++ + + + K + P L
Sbjct: 666 AFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------L 719
Query: 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI-RIIGDRFPW 2286
P+L IF Q LI+ A L L ++ + L+ ++ I L+ R+ +
Sbjct: 720 VPVLGIF-QRLIASKAYEVHGFDL-LEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTER 777
Query: 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQ---------TTFIKCLQDSTRTV-RSSAALA 2336
VK + I + G L F+ ++Q I L + R A +
Sbjct: 778 YVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIG 837
Query: 2337 LGKL----SALSTRVDPLVGDLLSSL 2358
+ + ++ L+ ++S+
Sbjct: 838 VLNMVINGQFFQSKYPTLISSTMNSI 863
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (141), Expect = 8e-09
Identities = 83/838 (9%), Positives = 229/838 (27%), Gaps = 90/838 (10%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + I+ + +++ A + + P LL + + ND+ +
Sbjct: 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGV 143
Query: 1796 VELLGDLL----FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851
+ + + ++ D A + + E + ++ N+ +
Sbjct: 144 LTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILF 203
Query: 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGE 1911
V + + + + P+ ++ + V M L+ S+
Sbjct: 204 DVLLVLIKL------YYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHAS 257
Query: 1912 LVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-------SQLLSFMD 1964
++ K+ + + +R + + I + + + + + S+ LSF+
Sbjct: 258 VLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLT 317
Query: 1965 ELIPTIRT-------ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT 2017
+ + + ++I E + E + L + D
Sbjct: 318 AVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTR 377
Query: 2018 SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILP 2077
D LK++ V L + + +
Sbjct: 378 RRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWK--------------FKD 423
Query: 2078 ALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137
+ ++ + T L+ + ++ L +R + I
Sbjct: 424 LYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIY 483
Query: 2138 YFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197
F + ++ L L + A + +++ ++ + +
Sbjct: 484 TFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKIL-TIRESNTSPAFIFHK 539
Query: 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 2257
+ IS L+ L+ + L+ S + + +
Sbjct: 540 EDISN-------------------STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRV 580
Query: 2258 EVTSEQSLKEFVIPITGPLIRIIG----DRFPWQVKSAILSTLSIIIRKGGIALKP-FLP 2312
TSE S++ + I I+ + + ++ I+ P +
Sbjct: 581 LQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD 640
Query: 2313 QLQTTFIKCLQDSTRTVRSSAALALGKL----SALSTRVDPLVGDLLSSLQVSDAGIREA 2368
+ TF+ + + + + + + + PL LL+ G A
Sbjct: 641 SMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPA 700
Query: 2369 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA 2428
+ LK +K V + + + L+ V +L + ++ +L
Sbjct: 701 VTRLLKSFIKTDSSIFPDLVPV--LGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLR 756
Query: 2429 DLLQELL-----NLASSPSWAARHGSVLVFATF-LRHNPSAISM------SPLFLSILDR 2476
++++ L +S + + F + + LF I
Sbjct: 757 PYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGN 816
Query: 2477 LKSSLKDEKFP---LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSE 2531
+ R+ + + ++++ T++ + S++ S
Sbjct: 817 FIIT-TLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIA 873
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (140), Expect = 1e-08
Identities = 70/670 (10%), Positives = 174/670 (25%), Gaps = 81/670 (12%)
Query: 1854 SDVSLSVRQAALHVWKTIVAN-------TPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906
+++ LS R A +K + + ++ ++ + S + + G
Sbjct: 47 TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIG 106
Query: 1907 RALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966
A+ + P+++ L+ L + +GV + +
Sbjct: 107 EAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLE 166
Query: 1967 IPTIRTALCDSILEVRESA-GLAFSTLFKSAGMQAIDEIVPT---LLHALEDDQTSDTAL 2022
I + L + ++ + A + + +++ L + +
Sbjct: 167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226
Query: 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 2082
D ++ + + L L L +V + ++ +
Sbjct: 227 DNIQVGMGI-----FHKYLSYSNPLLEDPDETEHASVLIKVKS-----SIQELVQLYTTR 276
Query: 2083 MGDDDMD-VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141
D + + +T + ++ + LVS+ L + +
Sbjct: 277 YEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL-----------TAVTRIPKY 325
Query: 2142 NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201
N+ +I+ V +E + ++++ S R A +
Sbjct: 326 FEIFNNESAMNNITEQIILPNVTLREEDVEL-FEDDPIEY--IRRDLEGSDTDTRRRACT 382
Query: 2202 TSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE--LREQAALGLGELIEV 2259
+ + K + L + Q + S ++ L
Sbjct: 383 DFLKELKEKNEV-------LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN 435
Query: 2260 TSEQS-----------LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308
+ + + +F P + AI I K
Sbjct: 436 GNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK----YIYTFRNQLTK 491
Query: 2309 PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368
L +L LQ V + AA+ + K+ + + E
Sbjct: 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST---EI 548
Query: 2369 ILTALKGVLKHAGKSVSSA-VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 2427
+L L ++ G S + + ++ +D ++ +L Q
Sbjct: 549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL---------AQF 599
Query: 2428 ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMS------PLFLSILDRLKSSL 2481
+++ + S+P H + L + P FL++
Sbjct: 600 IEIVTIMAKNPSNPR--FTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF 657
Query: 2482 KDEKFPLREA 2491
F +
Sbjct: 658 IPYVFQIIAF 667
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (106), Expect = 1e-04
Identities = 53/506 (10%), Positives = 147/506 (29%), Gaps = 52/506 (10%)
Query: 1232 VRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHL 1291
R + + +K+ ++ + ++++ SD K ++ + ALA +
Sbjct: 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436
Query: 1292 AKDDPKVHAVVDKL-------------LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ V + + L L N P ++ + +
Sbjct: 437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE 496
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVK----------GFGISSLKKY------GIAAT 1382
+ +L +++D+Y AA + ++ F + + A
Sbjct: 497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF---------SDQV 1433
+ + + E + + + + +P Q+L +
Sbjct: 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFT 616
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493
E+ Q V ++P+ L + Q++ + +
Sbjct: 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIP 676
Query: 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQ--TALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
P P L + + + + + + + S I + L + + +
Sbjct: 677 ESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYE 736
Query: 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
+ L + P + + ++ + L+ E K + + S
Sbjct: 737 VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796
Query: 1612 DMIPYI-----GLLLPEVKKVLVDPIPEV-----RSVAARAIGSLIRGMGE--ENFPDLV 1659
+I +I GL ++ +P + R +A + +++ +P L+
Sbjct: 797 FLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLI 856
Query: 1660 SWLLDALKSDNSNVERSGAAQGLSEV 1685
S ++++ S+ + ++
Sbjct: 857 SSTMNSIIETASSQSIANLKNDYVDL 882
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 0.001
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 9/164 (5%)
Query: 2317 TFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKG 2375
T K L +S + ++ L +L L+ +++S + R A K
Sbjct: 6 TVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLL-HVIASTNL-PLSTRLAGALFFKN 63
Query: 2376 VLKHAGKS------VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD 2429
+K + + + + L+ ++++V + ++ +
Sbjct: 64 FIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPT 123
Query: 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSI 2473
LL +L + S+ G + V + + LFL I
Sbjct: 124 LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI 167
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (132), Expect = 6e-08
Identities = 69/540 (12%), Positives = 145/540 (26%), Gaps = 75/540 (13%)
Query: 2076 LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 2127
+P L + D+D V L+K+ A ++ + V ++V + N
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVE 75
Query: 2128 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187
R +A + + + L I L+ +L + + A L +
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL------- 128
Query: 2188 VQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELRE 2247
+ G + L L + L + +
Sbjct: 129 ---------------------------LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161
Query: 2248 QAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307
L L E L L+ I+ ++ L ++
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIRE 2367
L D ++ + + L LS +T+ + + G L + +Q+ +
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 281
Query: 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV------------YHDDDHVRVSAASIL 2415
+ A + + + + + ++ LV S
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341
Query: 2416 GIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR---HNPSAISMSPLFLS 2472
+L L ++ L PS + + L N + +
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401
Query: 2473 ILDRLKSSLKDEKF-------------PLREASTKALGRLLLHQIQSGPANTTVVV--DI 2517
++ L + +D + +R LH + N V+ +
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT 461
Query: 2518 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 2577
+ V L+ ++R A L +A+ +A + L E L + V A
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (97), Expect = 0.001
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 2477 LKSSLKDEKFPLREASTKALGRLLLHQ-IQSGPANTTVVVDILASVVSALHDDSSEVRRR 2535
L L DE + + + +L + + + +V + + + + E R
Sbjct: 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARC 79
Query: 2536 ALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586
L +++ + + + PAL + L V A +
Sbjct: 80 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (106), Expect = 4e-05
Identities = 33/271 (12%), Positives = 70/271 (25%), Gaps = 34/271 (12%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
L D R ++ AR L +G + + ++ DK + + +LG
Sbjct: 24 LFRLLDDHNSLKRISS---ARV----LQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 76
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544
+ + + L D V++ + Q +V +
Sbjct: 77 I-KICKKCEDNVFNILNNMA---LNDKSACVRATAIESTAQRCK-KNPIYSPKIVEQSQI 131
Query: 1545 GLTDPNDHTKYS-------------LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
D + + + + + +L+ D + A +++ +
Sbjct: 132 TAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD 191
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ Q + +L + L V A G L
Sbjct: 192 CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELGD--- 246
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
L+ L L + N + A L
Sbjct: 247 ----KTLLPVLDTMLYKFDDNEIITSAIDKL 273
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 44.1 bits (102), Expect = 1e-04
Identities = 51/311 (16%), Positives = 88/311 (28%), Gaps = 48/311 (15%)
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QC +L +L D + + + LQ G V + +D N
Sbjct: 11 GLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKN 63
Query: 1551 DHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ IL Q + +L + L ++SA + A + C
Sbjct: 64 YIRRDIGAFILGQIKICKKCEDNVFNIL---NNMALNDKSACVRATAIESTAQRCKKNPI 120
Query: 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669
I + D VR A A + N + L++ LK
Sbjct: 121 YSPKIVEQ------SQITAFDKSTNVRRATAFA-------ISVINDKATIPLLINLLKDP 167
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729
N +V I + N + V + ++
Sbjct: 168 NGDVRN----------------WAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIG 211
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1789
++VL + D L V D + A E T LP+L + D+
Sbjct: 212 LSYRKDKRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDN 263
Query: 1790 RIRQSSVELLG 1800
I S+++ L
Sbjct: 264 EIITSAIDKLK 274
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.002
Identities = 34/270 (12%), Positives = 77/270 (28%), Gaps = 29/270 (10%)
Query: 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175
EL + + D+ + R SSA ++ + + I SD +
Sbjct: 23 ELFRLLDDHNSLKRISSARVLQLR----------GGQDAVRLAIEFCSDKNYIRRDIGAF 72
Query: 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK---------KKGGPILIPG--FCLP 2224
L ++ + K+ + + ++ + + R K PI P
Sbjct: 73 ILGQIK--ICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQ 130
Query: 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284
+ + + ++A + L + ++ + D
Sbjct: 131 ITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIR 190
Query: 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 2344
V+ + I ++ + L+ + TV A G+L
Sbjct: 191 DCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELG--D 246
Query: 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALK 2374
+ P++ +L D I + + LK
Sbjct: 247 KTLLPVLDTMLYKFD--DNEIITSAIDKLK 274
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2622 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.97 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.96 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.96 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.94 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.94 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.6 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.6 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.45 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.34 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.3 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.23 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.19 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.96 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.92 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.77 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.72 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.69 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.52 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.84 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.83 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.82 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.31 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.89 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.68 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 96.22 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 94.07 | |
| d2b6ca1 | 213 | Hypothetical protein EF3068 {Enterococcus faecalis | 81.46 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-44 Score=534.25 Aligned_cols=1028 Identities=16% Similarity=0.203 Sum_probs=748.4
Q ss_pred hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHH----HHHHHHhccc----ccc
Q 000050 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTF----VNT 1568 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~----al~~L~~~~~----~~~ 1568 (2622)
...+++.++++|+|++++||..|++||+.++..++++.+..+++.|+..+.+++...|. ++..++..-. ...
T Consensus 43 ~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~ 122 (1207)
T d1u6gc_ 43 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 122 (1207)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccch
Confidence 45789999999999999999999999999999998888899999999988888777763 4444433111 112
Q ss_pred CChhhhhhHHHHHHhhhc-CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1569 VDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1569 ~~~~~l~~i~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
........+++.+..... ..++.+|..+.++++.+....+. .+.++.+.+++.+...+.++.+.||..|+.|++.++
T Consensus 123 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~--~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~ 200 (1207)
T d1u6gc_ 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV 200 (1207)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH--hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 223344555666666554 45789999999999999987653 688899999999999999999999999999999999
Q ss_pred hhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHhHhHHHHHhccCCChhhHHHHHHHHHHhh
Q 000050 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 1724 (2622)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~ 1724 (2622)
..++++.+..+++.+++.+..+.+...|..++++++.++...|.. +++.++|.+++.+++.++.+|+.++.++..+.
T Consensus 201 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~ 280 (1207)
T d1u6gc_ 201 MSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 280 (1207)
T ss_dssp TTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 999988899999999998887666667778899999999988765 34778999999999999999999999999999
Q ss_pred hhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHH
Q 000050 1725 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2622)
Q Consensus 1725 ~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~ 1804 (2622)
..++..+.||+..+++.++.++.++.................. .........+.......|..|++|..++++++.++.
T Consensus 281 ~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~ 359 (1207)
T d1u6gc_ 281 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD-GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 359 (1207)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC-------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhh-ccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHH
Confidence 9999999999999999999998865443333222222211111 111122234444455678899999999999998864
Q ss_pred HhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhCh--------
Q 000050 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-------- 1876 (2622)
Q Consensus 1805 ~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p-------- 1876 (2622)
..+. . +. +....+++.+.....|.+..||..+..++..+....+
T Consensus 360 ~~~~--------------~---------l~-----~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~ 411 (1207)
T d1u6gc_ 360 TRHE--------------M---------LP-----EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411 (1207)
T ss_dssp TCCT--------------T---------HH-----HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHH--------------H---------HH-----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhc
Confidence 3210 0 01 1223455666667788999999999999988875321
Q ss_pred -----------hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCC--ChhhH
Q 000050 1877 -----------KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP--SASRR 1940 (2622)
Q Consensus 1877 -----------~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~--~~~vR 1940 (2622)
..+..+++.+++.+.+.+.+.+..+|..+..++..++...+.. ..+.+++.+...+.+. ...+|
T Consensus 412 ~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~ 491 (1207)
T d1u6gc_ 412 PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLK 491 (1207)
T ss_dssp ------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHH
T ss_pred hHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHH
Confidence 2245677888888999999999999999999999999887754 3566677777777764 45678
Q ss_pred HhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh----------hhhhhhHHHHHH
Q 000050 1941 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM----------QAIDEIVPTLLH 2010 (2622)
Q Consensus 1941 ~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~----------~~~~~ilp~Ll~ 2010 (2622)
..++..++.++..+.+..+.+++..+.+.+...+.|+...++..|..+++.+....+. ..+..+++.++.
T Consensus 492 ~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 571 (1207)
T d1u6gc_ 492 IDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 571 (1207)
T ss_dssp HHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHH
Confidence 8899999999998888889999999999999999999999999999999988876543 234556666677
Q ss_pred hcccCCc----hhHHHHHHHHHHhhhcccc---ccchhhhh----hcCCCchHHHHHHHHHHHH-hCCChhhhHhhhHHH
Q 000050 2011 ALEDDQT----SDTALDGLKQILSVRTTAV---LPHILPKL----VHLPLSAFNAHALGALAEV-AGPGLNFHLGTILPA 2078 (2622)
Q Consensus 2011 ~L~~~~~----~~~aL~~L~~il~~~~~~i---lp~Lip~L----~~~~~~~~~~~aL~sLa~~-~g~~l~~~l~~il~~ 2078 (2622)
.+.+.+. ...++.++..++...++.. ++.+++.+ .+.........+++.++.. .+..+.++++.+++.
T Consensus 572 ~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~ 651 (1207)
T d1u6gc_ 572 RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPI 651 (1207)
T ss_dssp HHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 6654432 3456777777664433322 23333333 2222222334455544432 245678999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhhccCh----hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHH
Q 000050 2079 LLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2622)
Q Consensus 2079 Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~i 2154 (2622)
+...+.+.++.+|..+..++..++...+. .....+++.+...+.+.+..++..+..+++.+++..+.....+...+
T Consensus 652 l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~i 731 (1207)
T d1u6gc_ 652 LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSI 731 (1207)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTT
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHH
Confidence 99999999999999999999999887653 34667777777888899999999999999999988777777778888
Q ss_pred HHHHHHHhcCCCh--hHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHH
Q 000050 2155 ISTLIVLLSDSDS--TTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLP 2232 (2622)
Q Consensus 2155 l~~L~~~l~d~d~--~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp 2232 (2622)
++.++..+.++.. .........+..+........ ....+++
T Consensus 732 l~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~-------------------------------------~~~~l~~ 774 (1207)
T d1u6gc_ 732 LNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNL-------------------------------------GYMDLLR 774 (1207)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTC-------------------------------------SHHHHHH
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHHHHHhcccccc-------------------------------------chHHHHH
Confidence 8888888765432 111212222222211111100 0001111
Q ss_pred HHHHHHcc-----CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHh-hcCCCCHhhHHHHHHHHHHHHHhcCCC
Q 000050 2233 IFLQGLIS-----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLSIIIRKGGIA 2306 (2622)
Q Consensus 2233 ~ll~~L~~-----~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~-l~~~~~~~vk~~al~~L~~L~~~~~~~ 2306 (2622)
.+...+.+ .........+.+++.+....+ ....+.+..+ +.. ......+.++..++.+++.++...+.
T Consensus 775 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~l~~~----l~~~~~~~~~~~~~~~al~~Lge~~~~~~~- 848 (1207)
T d1u6gc_ 775 MLTGPVYSQSTALTHKQSYYSIAKCVAALTRACP-KEGPAVVGQF----IQDVKNSRSTDSIRLLALLSLGEVGHHIDL- 848 (1207)
T ss_dssp HHSTTTTTC----CCHHHHHHHHHHHHHHHHHSC-CCSHHHHTTT----TTTTTTTTCCHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHhhccccchhhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHH----HHHHhcccchHHHHHHHHHHHHHHHHhccc-
Confidence 11111111 123344556777888776665 3333333222 222 22334677899999999999988774
Q ss_pred ccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCCh
Q 000050 2307 LKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSS 2386 (2622)
Q Consensus 2307 l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~ 2386 (2622)
++.+.+...+++.+.|+++.||.+|+.+||.++. .+.+.++|.++..+.+ +...++..++++++++...+.....
T Consensus 849 --~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~--~~~~~~lp~il~~l~~-~~~~~~~ll~al~ei~~~~~~~~~~ 923 (1207)
T d1u6gc_ 849 --SGQLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVVGLK 923 (1207)
T ss_dssp --CSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHS-CGGGHHHHHHHHHHHHHSSCSTTTH
T ss_pred --cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--hhHHHHhHHHHHHHhc-CchHHHHHHHHHHHHHHhcchhhhH
Confidence 3456788899999999999999999999999876 4567889999988865 4567889999999999988877678
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchH---------------------------------HHHHHHH
Q 000050 2387 AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ---------------------------------LADLLQE 2433 (2622)
Q Consensus 2387 ~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~---------------------------------~~~~l~~ 2433 (2622)
++.+.+|..|...+.+.++.+|..+++|+|+++...|... +.++++.
T Consensus 924 ~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~ 1003 (1207)
T d1u6gc_ 924 PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN 1003 (1207)
T ss_dssp HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 8999999999999999999999999999999976655421 1222332
Q ss_pred ----HHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHh------------------hhccCChhHHHh
Q 000050 2434 ----LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS------------------SLKDEKFPLREA 2491 (2622)
Q Consensus 2434 ----ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~------------------~~~~~~~~ir~~ 2491 (2622)
++..+.+++...|..+..+|+.++...|..+. ++.+.+++.+.+ |..|++.++|++
T Consensus 1004 li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~--~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~ 1081 (1207)
T d1u6gc_ 1004 CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIR--DLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKA 1081 (1207)
T ss_dssp HSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTG--GGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHH--HHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHH
Confidence 34456677888888888899999988886664 567888888873 445678899999
Q ss_pred HHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcC--C
Q 000050 2492 STKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--G 2569 (2622)
Q Consensus 2492 a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~--~ 2569 (2622)
|+++++.++..+.+. ..+.++++.++.|+.| +.|+|.++..++..++..+|..+.++++.++|++-+.+.. +
T Consensus 1082 a~e~~~~~l~~~~~~-----~~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1155 (1207)
T d1u6gc_ 1082 AFECMYTLLDSCLDR-----LDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVK 1155 (1207)
T ss_dssp HHHHHHHHHHSSCSS-----SCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhhhh-----cCHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999887643 3568899999999998 5799999999999999999999999999999999998643 2
Q ss_pred c----------chhhchhHHHHHHHhcccccchhHHHHHHHhhchhhhhhccCCCccc
Q 000050 2570 S----------TPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHRY 2617 (2622)
Q Consensus 2570 ~----------~~vk~aae~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 2617 (2622)
. ...++++.||+.++.+++.. +..+.|.+++ .+|+++||+++
T Consensus 1156 ~~~~~q~~e~~~e~~~~~~~~~~~l~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~ 1207 (1207)
T d1u6gc_ 1156 ANSVKQEFEKQDELKRSAMRAVAALLTIPEA-EKSPLMSEFQ-----SQISSNPELAA 1207 (1207)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTSSCSC-SSSSSCCCCC-----HHHHHHHHHTC
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHcCCCc-ccChHHHHHH-----HHHHhChhccC
Confidence 2 34567778999999988764 4567788888 88888888764
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-37 Score=461.11 Aligned_cols=1114 Identities=17% Similarity=0.184 Sum_probs=759.6
Q ss_pred hhhhHHH-HHHHHHhhh-hccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc-hHHHHHHHHHHHhcCCC
Q 000050 1275 LVREGVV-IFTGALAKH-LAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDK 1351 (2622)
Q Consensus 1275 ~vr~~~~-~~~~~la~~-l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~-~~~~i~~Ll~~L~~~~~ 1351 (2622)
.+|-.+. .++..+... ...++...+.+++.++..|.|++++||..|.+|+++++...++. .+.+++.++..+... +
T Consensus 18 d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~-~ 96 (1207)
T d1u6gc_ 18 DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSD-K 96 (1207)
T ss_dssp HHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCS-S
T ss_pred hHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCC-c
Confidence 3564443 333344321 22234456789999999999999999999999999999887653 356777777776544 4
Q ss_pred hHHHHHHHHHHHHHHhhhCccch----h---hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Q 000050 1352 YGERRGAAFGLAGVVKGFGISSL----K---KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 1424 (2622)
Q Consensus 1352 ~~~r~~Aa~~L~~l~~~lg~~~l----~---~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ 1424 (2622)
...|..+..+|..++..++.... . ...+++.+...+.+.+++..|..++.+++.+...+|..+.++...+++.
T Consensus 97 ~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~ 176 (1207)
T d1u6gc_ 97 EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTC 176 (1207)
T ss_dssp SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Confidence 67899999999999987764321 1 1246666777777777899999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhcc-CCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHH
Q 000050 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2622)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~ 1503 (2622)
++..+.+++..||+.|..++..++..++...+..+++.+++.+. +..+..+++++.+++.++...|..+.++++.++|.
T Consensus 177 l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 256 (1207)
T d1u6gc_ 177 LLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPL 256 (1207)
T ss_dssp HGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHH
Confidence 99999999999999999999999998888878888898888775 45678888999999999999999999999999999
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhhcCC---hhHHhHHHHHHhhcC-CCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000050 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2622)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~ilp~Ll~~l~-d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2622)
+.+.+++.++++|+.+..++..+...+++ ++...+++.+.+.+. ||+............ .............+
T Consensus 257 l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 333 (1207)
T d1u6gc_ 257 VVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA---MDADGGDDDDQGSD 333 (1207)
T ss_dssp HHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------------------------
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhh---hhhhccchhhhhHH
Confidence 99999999999999999999999988765 456777777777764 443322211111110 00001111122233
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000050 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2622)
Q Consensus 1580 ~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll 1659 (2622)
.......+.+|++|..++++++.++.. .++.+.+++..+++.+...+.|.++.||..+..+++.+....+........
T Consensus 334 ~~~~~~~d~s~~vR~~a~~~L~~l~~~--~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~ 411 (1207)
T d1u6gc_ 334 DEYSDDDDMSWKVRRAAAKCLDAVVST--RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411 (1207)
T ss_dssp --------CTTHHHHHHHHHHHHHHTT--CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHhhhhhhhHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhc
Confidence 334445678999999999999999874 445778889999999999999999999999999999998876543211111
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHH
Q 000050 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2622)
Q Consensus 1660 ~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii 1739 (2622)
+.... ..... +. ........+++.+.+.+.+.++.+|..++.++..+....+..+.+|+..++
T Consensus 412 ~~~~~---~~~~~--~~------------~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~ 474 (1207)
T d1u6gc_ 412 PDAME---QGETP--LT------------MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 474 (1207)
T ss_dssp ---------CCCH--HH------------HHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred hHHHH---hhcch--HH------------HHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhH
Confidence 11111 01100 00 011223455666777788889999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--hHHHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccc
Q 000050 1740 PAILDGLADEN--ESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2622)
Q Consensus 1740 ~~ll~~L~d~~--~~VR~~al~al~~lv~~~~~~----~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~ 1813 (2622)
+.+...+.+.. ..+|..++.++..+...+..+ ....+.|.+...+.|.+++++..++..++.+...+.......
T Consensus 475 ~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~ 554 (1207)
T d1u6gc_ 475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPS 554 (1207)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccch
Confidence 99999998754 467888888888888766554 345577888888899999999999999999887654331100
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHH
Q 000050 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM--VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2622)
Q Consensus 1814 ~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~--~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~ 1891 (2622)
. .... . ....++..+.. ...|.+.++|..|+.+++.+....+..+.++++.+++.+.
T Consensus 555 ------~--~~~~-~------------~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~ 613 (1207)
T d1u6gc_ 555 ------S--FDAT-P------------YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613 (1207)
T ss_dssp ------C--CCCH-H------------HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHH
T ss_pred ------h--hhhH-H------------HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 0 0000 0 11122222222 2367788999999999999999888888888899999998
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHH
Q 000050 1892 SSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2622)
Q Consensus 1892 ~~L~s~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll 1967 (2622)
..+.+.. .|..+..+++.+...... ..++.+++.+...+.+.++.+|..++.++..++...++.........++
T Consensus 614 ~~l~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l 691 (1207)
T d1u6gc_ 614 ERLKNEI--TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 691 (1207)
T ss_dssp HHTTSSS--HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHhcchh--hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHH
Confidence 8887544 678888888877654332 2456778888888999999999999999999988876655555667777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh---hhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhh
Q 000050 1968 PTIRTALCDSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 2044 (2622)
Q Consensus 1968 ~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L 2044 (2622)
+.+...+.+.+..++..+...++.+.+..+. .....+++.++..+.++.....++..+..++..
T Consensus 692 ~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~------------- 758 (1207)
T d1u6gc_ 692 DELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQA------------- 758 (1207)
T ss_dssp TTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHH-------------
T ss_pred HhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH-------------
Confidence 7777888999999999999888888654432 234566777777666654444444433332210
Q ss_pred hcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCC-----CHHHHHHHHHHHHHhhhccChhcHHHHHHHHHh
Q 000050 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-----DMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119 (2622)
Q Consensus 2045 ~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~-----~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~ 2119 (2622)
+.. .+. -......+++.+.....+. ..........+++.+....+.. ....+..++.
T Consensus 759 ---------------l~~-~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~~~~l~~~l~ 820 (1207)
T d1u6gc_ 759 ---------------LVV-TGT-NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKE-GPAVVGQFIQ 820 (1207)
T ss_dssp ---------------HHT-TCC-TTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCC-SHHHHTTTTT
T ss_pred ---------------HHh-ccc-cccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHH
Confidence 000 000 0111122233333332211 1223333444555554444332 2333444444
Q ss_pred hcC--CCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHH
Q 000050 2120 GVG--DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197 (2622)
Q Consensus 2120 ~l~--d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~ 2197 (2622)
... +..+..|..++.++|.++...+... .+++...++..+++++++||.+|..+|+.+.......
T Consensus 821 ~~~~~~~~~~~~~~al~~Lge~~~~~~~~~---~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~---------- 887 (1207)
T d1u6gc_ 821 DVKNSRSTDSIRLLALLSLGEVGHHIDLSG---QLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE---------- 887 (1207)
T ss_dssp TTTTTTCCHHHHHHHHHHHHHHHHHSCCCS---CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHH----------
T ss_pred HHhcccchHHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHH----------
Confidence 333 2446788889999999887655433 2456677788899999999999999999886543222
Q ss_pred HHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHH
Q 000050 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277 (2622)
Q Consensus 2198 ~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li 2277 (2622)
.+|.+++.+.+. +..+.....++..++...+..
T Consensus 888 --------------------------------~lp~il~~l~~~-~~~~~~ll~al~ei~~~~~~~-------------- 920 (1207)
T d1u6gc_ 888 --------------------------------YLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVV-------------- 920 (1207)
T ss_dssp --------------------------------HHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCST--------------
T ss_pred --------------------------------HhHHHHHHHhcC-chHHHHHHHHHHHHHHhcchh--------------
Confidence 233333333222 223333444444444333322
Q ss_pred HhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHh
Q 000050 2278 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357 (2622)
Q Consensus 2278 ~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~ 2357 (2622)
.+.++.+++++.+++.+.++++.+|..++.|||.|+...| ..++|.|...
T Consensus 921 ----------------------------~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~--~~~lp~L~~~ 970 (1207)
T d1u6gc_ 921 ----------------------------GLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGY 970 (1207)
T ss_dssp ----------------------------TTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTT
T ss_pred ----------------------------hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHHH
Confidence 2334555666666666777788899999999999876443 5688888888
Q ss_pred hhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---HHHHHHHHH
Q 000050 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQEL 2434 (2622)
Q Consensus 2358 l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~l 2434 (2622)
+.++++.+|..++.+++.++...+... .++...++..+...+.|++..+|+.|..+++.+++..|.- .+..+++.+
T Consensus 971 l~~~~~~~r~~ai~~l~~~~~~~~~~~-~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l 1049 (1207)
T d1u6gc_ 971 LISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049 (1207)
T ss_dssp SSSSCHHHHHHHHHHTGGGCCSSCCTH-HHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 888899999999999999998777655 5677777877788999999999999999999999987742 244444444
Q ss_pred HhhcC------------------CCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHH
Q 000050 2435 LNLAS------------------SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKAL 2496 (2622)
Q Consensus 2435 l~~~~------------------~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~al 2496 (2622)
.+... ++.-..|..+..++..++..+.+.+. ..++.+.+..++.|+ .+|+.-+...+
T Consensus 1050 ~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~----~~~~~~~~~~gl~d~-~di~~~~~~~l 1124 (1207)
T d1u6gc_ 1050 YNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLD----IFEFLNHVEDGLKDH-YDIKMLTFLML 1124 (1207)
T ss_dssp HHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSC----HHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred HHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcC----HHHHHHHHHhcccch-HHHHHHHHHHH
Confidence 43211 12334677777888888877766542 235677778888875 58999999999
Q ss_pred HHHHhhhhhcCCCCchhhHhHHHHHHh----hcCCCC--------HHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHh
Q 000050 2497 GRLLLHQIQSGPANTTVVVDILASVVS----ALHDDS--------SEVRRRALSALKSVAKANPSAIMVHVALFGPALAE 2564 (2622)
Q Consensus 2497 g~ll~~~~~~~~~~~~~l~~~l~~l~~----~l~d~s--------~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~ 2564 (2622)
.+++..+... ....+..+++++-. .++++. .|.+|.++.++..+.+..+....|.+..++..+.+
T Consensus 1125 ~~l~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1201 (1207)
T d1u6gc_ 1125 VRLSTLCPSA---VLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISS 1201 (1207)
T ss_dssp HHHHHSCCHH---HHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCSCSSSSSCCCCCHHHHH
T ss_pred HHHHHhCcHH---HHHHHHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHHHHHHHcCCCcccChHHHHHHHHHHh
Confidence 9988876431 01234444444443 345544 67899999999998664333456666666555543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.6e-29 Score=343.63 Aligned_cols=566 Identities=19% Similarity=0.236 Sum_probs=435.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~ 1416 (2622)
..+..+++.|. +++...|..|+..|+.++..+|+.... ..++|++.+.++++ ..++.++...++.+....|. ..
T Consensus 10 ~~i~~l~~~l~-~~~~~~R~~a~~~l~~ia~~lg~~~~~-~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~~--~~ 83 (588)
T d1b3ua_ 10 YPIAVLIDELR-NEDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVGG--PE 83 (588)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGTS--GG
T ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHcCC--hh
Confidence 34556677765 456889999999999999999987654 37999999988765 34555544444443332221 23
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCCh-hhHHHHHHHHHHHHhhCchhhhh
Q 000050 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w-~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
++..++|.+...+.+++..||++|..++..+...+++..+...+.+++..|.+++| ..|..++.+++.+........
T Consensus 84 ~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~-- 161 (588)
T d1b3ua_ 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV-- 161 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH--
Confidence 56678899889999999999999999999999999988887766667777766565 567777777777765444332
Q ss_pred hhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhh
Q 000050 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2622)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2622)
...+.+.+.++++|.++.||.+|+.+++.+++.++.+... .
T Consensus 162 -~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~--------------------------------------~ 202 (588)
T d1b3ua_ 162 -KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK--------------------------------------S 202 (588)
T ss_dssp -HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHH--------------------------------------H
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHH--------------------------------------H
Confidence 3567788888999999999999999999999876533221 1
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-
Q 000050 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2622)
Q Consensus 1576 ~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~- 1654 (2622)
.++|.+...++|.++.+|..+..+++.++...+. ..+...++|.+...+.|++|.||..++.+++.++...+.+.
T Consensus 203 ~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~ 278 (588)
T d1b3ua_ 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT 278 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhh
Confidence 2445555555666677777777777777765432 22345577888888888888888888888888888777653
Q ss_pred chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh-----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc
Q 000050 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2622)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 1729 (2622)
...++|.+...+.+. ...+|..++..++.++..++.+ .++.++|.+...+.+.++.+|..+..++..++..+|.
T Consensus 279 ~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~ 357 (588)
T d1b3ua_ 279 KTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357 (588)
T ss_dssp HHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH
T ss_pred hhhhhHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch
Confidence 345677776666544 4557888888888888776643 3467888888888999999999999999888888876
Q ss_pred chhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcC
Q 000050 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1808 (2622)
Q Consensus 1730 ~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~-~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~ 1808 (2622)
..+.+.++|.+...+.|+++++|..+..++..+...++.. ..+.++|.+.+.+.|.+|++|..+++.++.+....
T Consensus 358 --~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~-- 433 (588)
T d1b3ua_ 358 --DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL-- 433 (588)
T ss_dssp --HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH--
T ss_pred --hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc--
Confidence 3566778999999999999999999999998888877654 35679999999999999999999999998876442
Q ss_pred CcccccccCCCCCCcccHHHHHHHHHHHhChhhH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 000050 1809 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR-NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887 (2622)
Q Consensus 1809 ~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~-~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll 1887 (2622)
|.+.+ +.+.+.+...+.|..+.||.+|+.+++.++...+.. ...+.++
T Consensus 434 -----------------------------~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~--~~~~~i~ 482 (588)
T d1b3ua_ 434 -----------------------------GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATII 482 (588)
T ss_dssp -----------------------------CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTH
T ss_pred -----------------------------ChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH--HHHHHHH
Confidence 22211 223344455678999999999999999999866542 3456678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhH
Q 000050 1888 NTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2622)
Q Consensus 1888 ~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~l 1966 (2622)
+.+...+.++++..|..++.+++.+...++.. +.+.++|.+.+.++|+.++||.+++.+++.+....+... +...+
T Consensus 483 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---~~~~i 559 (588)
T d1b3ua_ 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---LQSEV 559 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---HHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---HHHHH
Confidence 88888899999999999999999999887765 467899999999999999999999999999876665543 33567
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000050 1967 IPTIRTALCDSILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1967 l~~l~~~L~d~d~~VR~~A~~al~~l 1992 (2622)
.|.+..++.|+|.+||..|.+|++.+
T Consensus 560 ~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 560 KPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 88888888999999999999999865
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.8e-30 Score=374.30 Aligned_cols=748 Identities=15% Similarity=0.161 Sum_probs=506.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHH--------HHHHHhcCCCC
Q 000050 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYDF 1128 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la--------~~~w~~~~~~~ 1128 (2622)
+++.++|++++|||+++|++|+++|+..... |....++..+.....+.+..+|.+| ...|.....+.
T Consensus 11 ~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~-----p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~ 85 (888)
T d1qbkb_ 11 QQILQLLKESQSPDTTIQRTVQQKLEQLNQY-----PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 85 (888)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTSTTTSTTS-----TTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 4678889999999999999999999876311 2233445555554455566677775 35788766555
Q ss_pred CCCh-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh
Q 000050 1129 GTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2622)
Q Consensus 1129 ~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~ 1206 (2622)
.+.+ ..++..|.+++..+|+.++.+++.++.. +|+.|++++..|.+.. . ..++.+|.++..+|+++++
T Consensus 86 ~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l----~------s~~~~~~~~al~~L~~i~e 155 (888)
T d1qbkb_ 86 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLL----D------SEDYNTCEGAFGALQKICE 155 (888)
T ss_dssp CHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSS----T------GGGSSCSSSSSTTTHHHHG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHh----C------CCCHHHHHHHHHHHHHHHH
Confidence 5556 7788999999999999999999999753 3444555544444321 1 2345678888889988876
Q ss_pred hh----CCC----ChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccc---hhhhhHHHHHHHhcCCCCChhhhhh
Q 000050 1207 VL----RTK----DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDL 1275 (2622)
Q Consensus 1207 ~~----~~~----~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~---~~~~llp~~~~~l~~~~~~~~~~~~ 1275 (2622)
.. ..+ ..+.++..++ .++.+.++.||..++.++..++...+.. ..+.+++.+...... .+..
T Consensus 156 ~~~~~~~~~~~~~~~~~ll~~ll-~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~------~~~~ 228 (888)
T d1qbkb_ 156 DSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGD------EEPE 228 (888)
T ss_dssp GGHHHHHTC---CCSTTTTHHHH-TGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSC------CCSS
T ss_pred HhHHHhhHHHHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCC------cchH
Confidence 32 222 1233444443 6778888899999999887776544432 234444444333332 2346
Q ss_pred hhhHHHHHHHHHhhh-hccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhh------ccchHHHHHHH------
Q 000050 1276 VREGVVIFTGALAKH-LAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM------QDEAPTLVSRL------ 1342 (2622)
Q Consensus 1276 vr~~~~~~~~~la~~-l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~------~~~~~~~i~~L------ 1342 (2622)
+|..++..++.+... .+.-.+.+..+++.++..+.+++++|+..+.+.+..+.... ....+.+++.+
T Consensus 229 vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~ 308 (888)
T d1qbkb_ 229 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308 (888)
T ss_dssp STTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 788888777766643 23335667777888888889999999998887654332110 00000000000
Q ss_pred -----------------------------------------------HHHHhc------CCChHHHHHHHHHHHHHHhhh
Q 000050 1343 -----------------------------------------------LDQLMK------SDKYGERRGAAFGLAGVVKGF 1369 (2622)
Q Consensus 1343 -----------------------------------------------l~~L~~------~~~~~~r~~Aa~~L~~l~~~l 1369 (2622)
-..... ..+|..|+.++.+|..++...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~ 388 (888)
T d1qbkb_ 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY 388 (888)
T ss_dssp SSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC
T ss_pred chHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh
Confidence 000000 023678999999999888877
Q ss_pred CccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000050 1370 GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2622)
Q Consensus 1370 g~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~ 1449 (2622)
|...+. .+++.+.+.+.+. +|..|++|+++|+.+++++.+.+.+++.+++|.++..+.|+++.||.++..+++.++.
T Consensus 389 ~~~il~--~~l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 465 (888)
T d1qbkb_ 389 RDELLP--HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465 (888)
T ss_dssp CSSSHH--HHHHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHH--HHHHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 776664 6889999988887 7999999999999999998888999999999999999999999999998888776643
Q ss_pred hhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
... +.....++..+++.++..+.|+++.||.+|+.||..+.+.
T Consensus 466 ~~~-------------------------------------~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~ 508 (888)
T d1qbkb_ 466 WVV-------------------------------------SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 508 (888)
T ss_dssp HHH-------------------------------------SSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred Hhh-------------------------------------hhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 221 1122345678888899999999999999999999999876
Q ss_pred cCC---hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1530 IKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1530 ~~~---~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
.++ |++..+++.+...+ .+...+.+..+.++++.++..
T Consensus 509 ~~~~l~p~~~~il~~l~~~l---------------------------------------~~~~~~~~~~~~~al~~l~~~ 549 (888)
T d1qbkb_ 509 ACTELVPYLAYILDTLVFAF---------------------------------------SKYQHKNLLILYDAIGTLADS 549 (888)
T ss_dssp HTTSSGGGHHHHHHHHHHHT---------------------------------------TTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHH---------------------------------------hhhhHHHHHHHHHHHHHHHHh
Confidence 543 33444444444444 333445555556666666655
Q ss_pred cCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCCCch---hhHHHHHHHhhh-------------
Q 000050 1607 VTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKS------------- 1668 (2622)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~g~~~~~---~ll~~Ll~~L~~------------- 1668 (2622)
++..-.-.+|.+.+++.+.+.... .+...+.....+++.++...|+...+ .+++.++..+..
T Consensus 550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 629 (888)
T d1qbkb_ 550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 629 (888)
T ss_dssp HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 443222345777788887776542 22234456788999999888876322 223322222211
Q ss_pred ---cCChHHHHHHHHHHHHHHHHhchhH---H--HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1669 ---DNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1669 ---~~~~~~r~~a~~~L~~i~~~~g~~~---l--~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
.........+...++.++..+|... . ..+++.+...+.+.++.+|+.++.+++.++..++..+.||++.+++
T Consensus 630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~ 709 (888)
T d1qbkb_ 630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMP 709 (888)
T ss_dssp TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111223345556777877777642 2 2367778888899999999999999999999999999999999999
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCC
Q 000050 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820 (2622)
Q Consensus 1741 ~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~d 1820 (2622)
.+...+.++...++..+..+++.++..++.. +.|.+
T Consensus 710 ~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~----~~py~---------------------------------------- 745 (888)
T d1qbkb_ 710 ILGTNLNPEFISVCNNATWAIGEISIQMGIE----MQPYI---------------------------------------- 745 (888)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG----GGGGS----------------------------------------
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH----hhhhH----------------------------------------
Confidence 9999999888888888888887777665543 11110
Q ss_pred CCcccHHHHHHHHHHHhChhhHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC-C
Q 000050 1821 DEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-S 1897 (2622)
Q Consensus 1821 de~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s-~ 1897 (2622)
+.+++.+... ..+....|++.++.++|.++...|..+.++++.+++..+..+.. .
T Consensus 746 ----------------------~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~ 803 (888)
T d1qbkb_ 746 ----------------------PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR 803 (888)
T ss_dssp ----------------------HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSC
T ss_pred ----------------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCC
Confidence 1111111111 13345668888999999999999999999999999999888875 4
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc--CCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHH
Q 000050 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGL--KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2622)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L--~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2622)
+.+.+..|...++.+++..+..+.+.+..++.... .++.++++...+..|.......+++.+..++.++-|.++
T Consensus 804 d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~ 879 (888)
T d1qbkb_ 804 DNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLK 879 (888)
T ss_dssp CSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcCCHHHH
Confidence 56678889999999998877666665544443332 345677888887777776666665555555444433333
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-26 Score=316.86 Aligned_cols=562 Identities=17% Similarity=0.218 Sum_probs=441.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccch-hhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCC
Q 000050 1217 MTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN-VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD 1295 (2622)
Q Consensus 1217 ~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~-~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~ 1295 (2622)
+..|+ ..+.+.++.+|..+++.+..+....|.+. .++++|.+.+.+.. .++++..+..-++.+...+ .+.
T Consensus 12 i~~l~-~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~-------~~ev~~~~~~~l~~~~~~~-~~~ 82 (588)
T d1b3ua_ 12 IAVLI-DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD-------EDEVLLALAEQLGTFTTLV-GGP 82 (588)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCC-------CHHHHHHHHHHHTTCSGGG-TSG
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHc-CCh
Confidence 45554 67889999999999999888888888765 58899999888764 1345544444455444433 223
Q ss_pred cchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc-hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccch
Q 000050 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 1374 (2622)
Q Consensus 1296 ~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~-~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l 1374 (2622)
..+..+++.+...+.+++..||.++++++..+....... ....+..++..|.+++.+..|..|+..++.+....+....
T Consensus 83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~ 162 (588)
T d1b3ua_ 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK 162 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence 356667788888889999999999999999887665432 3444556777777776666777777777777665554433
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000050 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2622)
Q Consensus 1375 ~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2622)
. .+++.+.+.++|+ ++.+|..+..+++.+++..+. ......++|.+...+.|+++.||..+..++..+...++..
T Consensus 163 ~--~l~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~ 237 (588)
T d1b3ua_ 163 A--ELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp H--HHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred H--HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence 2 5788888888888 899999999999999988774 2223568889999999999999999999999999888776
Q ss_pred hH-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-
Q 000050 1455 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN- 1532 (2622)
Q Consensus 1455 ~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~- 1532 (2622)
.. ..++|.+.+.+.+++|++|..++..|+.++...+.... ...++|.+..+++|++++||..|+.+++.++..++.
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~ 315 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT--KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH--HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhh--hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 54 66888888889999999999999999999875444322 256889999999999999999999999999987653
Q ss_pred ----hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCC-hhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhc
Q 000050 1533 ----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2622)
Q Consensus 1533 ----~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~-~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~ 1607 (2622)
.....++|.+...+.|++..+|.++...+. .+....+ ......++|.+...+.|.++++|..+...++.+....
T Consensus 316 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~-~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~ 394 (588)
T d1b3ua_ 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIM-GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGG-GGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHh-hhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc
Confidence 235788999999999999998854432221 1111112 2345678899999999999999999999888887754
Q ss_pred CCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhhHHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 000050 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2622)
Q Consensus 1608 ~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~-~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~ 1686 (2622)
+ .....+.++|.+...+.|++|.+|..++.+++.++..+|.+.+ +.+.|.++..+. +....+|..++.+++.++
T Consensus 395 ~----~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-D~~~~VR~~A~~~L~~l~ 469 (588)
T d1b3ua_ 395 G----IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-DHVYAIREAATSNLKKLV 469 (588)
T ss_dssp C----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHH
T ss_pred c----hhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHHH
Confidence 3 2334677899999999999999999999999999999987754 556666666665 445779999999999999
Q ss_pred HHhchhHH-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000050 1687 AALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2622)
Q Consensus 1687 ~~~g~~~l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv 1765 (2622)
..+|.+.. ..++|.+.+...++++..|..++.+++.+...++..+ +.+.++|.+++.+.|+.++||.++.+++..+.
T Consensus 470 ~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~ 547 (588)
T d1b3ua_ 470 EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred HHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99998744 6788999999999999999999999999998887643 45679999999999999999999999999987
Q ss_pred HHhhhchh-hhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000050 1766 EHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1766 ~~~~~~~i-~~llp~l~~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
..++.... ..+.|.+.....|++..||..|.+.+..+
T Consensus 548 ~~~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHcCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 76665543 44778888888888888999888877654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-28 Score=355.11 Aligned_cols=754 Identities=14% Similarity=0.146 Sum_probs=534.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhc---cccccCChhhhhhHHHHHHhhhc
Q 000050 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRGLR 1586 (2622)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~---~~~~~~~~~~l~~i~p~L~~~l~ 1586 (2622)
+++..+|+.|.+.|..+.. .|++..++..++....+++..+|.....+.+. .....++......+.+.+.+++.
T Consensus 22 s~d~~~r~~A~~~L~~~~~---~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~Ik~~ll~~l~ 98 (888)
T d1qbkb_ 22 SPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG 98 (888)
T ss_dssp HHHHHHHHHHTTSTTTSTT---STTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHc
Confidence 3457899999998888753 35565556666665566666777432222221 12234556667788899999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC--------CCCchhh
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--------EENFPDL 1658 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g--------~~~~~~l 1658 (2622)
+.+..+|..++.+++.++... . ...++.++|.+.+.+.++++.+|..+..+|+.+++..+ ....+.+
T Consensus 99 ~~~~~vr~~~~~~i~~i~~~~-~----~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~l 173 (888)
T d1qbkb_ 99 DSSPLIRATVGILITTIASKG-E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 173 (888)
T ss_dssp CCCSSTTTTTTTTTHHHHTTT-S----SCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C----ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Confidence 999999999999999998642 2 23467788888888888888889999999999876432 1246778
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch---hHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH
Q 000050 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL 1735 (2622)
Q Consensus 1659 l~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~---~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l 1735 (2622)
+|.+++.+.+... .+|..++.++..++...+. ..++.+++.+.....++++.+|..++.+|..+....+..|.||+
T Consensus 174 l~~ll~~~~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l 252 (888)
T d1qbkb_ 174 IPKFLQFFKHSSP-KIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM 252 (888)
T ss_dssp THHHHTGGGSSSS-CSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTT
T ss_pred HHHHHHHhhCCCH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999888876553 4677777777776554432 24577888899988999999999999999999999999999999
Q ss_pred HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHH-----HHH
Q 000050 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL-----LFK 1805 (2622)
Q Consensus 1736 ~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~-----~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~l-----l~~ 1805 (2622)
..+++.++..+.|++++||..|.+.+..+.+.. -...++.++|.+...+....+.+........... ...
T Consensus 253 ~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (888)
T d1qbkb_ 253 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQD 332 (888)
T ss_dssp TTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGG
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHH
Confidence 999999999999999999988877665544321 1123455666666666555554332111000000 000
Q ss_pred hcCCcc--cc--------ccc-------CCCCCC---cccHHHHHHHH----HHHhChhhHHHHHHHHHHhccCCCHHHH
Q 000050 1806 VAGTSG--KA--------LLE-------GGSDDE---GASTEAHGRAI----IEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2622)
Q Consensus 1806 ~~~~~~--~~--------~~~-------~~~dde---~~~~~~~~~~l----~~~Lg~e~~~~il~~L~~~~~D~~~~VR 1861 (2622)
+.+... +. ... +.++++ +.......... ....|.+....+++.+...+.+.+|.+|
T Consensus 333 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~r 412 (888)
T d1qbkb_ 333 IRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 412 (888)
T ss_dssp CCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHH
Confidence 000000 00 000 000111 01111111111 2233445556677777777889999999
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCCh
Q 000050 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSA 1937 (2622)
Q Consensus 1862 ~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~ 1937 (2622)
++|+.+++.++.+.+..+.++++.+++.++..+.|+++.+|..++.++++++....+. ....+++.+...+.|+++
T Consensus 413 eaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~ 492 (888)
T d1qbkb_ 413 ESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 492 (888)
T ss_dssp HHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCH
T ss_pred HHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCH
Confidence 9999999999998888899999999999999999999999999999999998866543 467788888888999999
Q ss_pred hhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh-----hhhhHHHHHHhc
Q 000050 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-----IDEIVPTLLHAL 2012 (2622)
Q Consensus 1938 ~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~-----~~~ilp~Ll~~L 2012 (2622)
.++.++|.++..++...+ ..+.+|++.+++.+..++.+.+...+..+..+++.+....|... .+.++|.++...
T Consensus 493 ~V~~~a~~al~~l~~~~~-~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 571 (888)
T d1qbkb_ 493 RVQEAACSAFATLEEEAC-TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 571 (888)
T ss_dssp HHHHHHHHHHHHHHHHHT-TSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 999999999999987765 45678999999999999999888888888899999887776532 233444444433
Q ss_pred cc---CCc-hhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhc-----
Q 000050 2013 ED---DQT-SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM----- 2083 (2622)
Q Consensus 2013 ~~---~~~-~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l----- 2083 (2622)
.. ++. ....+ .+++.+....|..+.+|...+++.+++.+
T Consensus 572 ~~~~~~~~~~~~~l--------------------------------e~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 619 (888)
T d1qbkb_ 572 NMLKDEDKDLFPLL--------------------------------ECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLA 619 (888)
T ss_dssp TTSCTTCTTHHHHH--------------------------------HHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHH--------------------------------HHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 21 110 11222 33444444455555555544444333221
Q ss_pred ------------CCCCHHHHHHHHHHHHHhhhccChh---cH--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc
Q 000050 2084 ------------GDDDMDVQSLAKEAAETVTLVIDEE---GV--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146 (2622)
Q Consensus 2084 ------------~~~~~~vr~~a~~al~~l~~~~~~~---~l--~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~ 2146 (2622)
...+.+....+...+..++...+.. .+ ..+++.+...+.+.++.+|+.|..++|.++...+..
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~ 699 (888)
T d1qbkb_ 620 QAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 699 (888)
T ss_dssp HHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHH
Confidence 1234455555666666666554432 12 136778888889999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcC
Q 000050 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKA 2226 (2622)
Q Consensus 2147 l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~ 2226 (2622)
+.+|++.+++.+...+++++.+|+.++..+++.++...+.+.. .+
T Consensus 700 ~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~-----------------------------------py 744 (888)
T d1qbkb_ 700 VKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ-----------------------------------PY 744 (888)
T ss_dssp TGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGG-----------------------------------GG
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhh-----------------------------------hh
Confidence 9999999999999999999999999999999998766543321 24
Q ss_pred chhhHHHHHHHHccC--CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcC
Q 000050 2227 LQPLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~ 2304 (2622)
+..+++.++..+.++ ...++++++.++|.++...+ +.+.||++++++++++.+....+.+.|..++..++.+....+
T Consensus 745 ~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p-~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p 823 (888)
T d1qbkb_ 745 IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP-QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 823 (888)
T ss_dssp SHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCH-HHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCH-HHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc
Confidence 445666666666553 35688999999999998876 889999999999999999886677789999999999999888
Q ss_pred CCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 000050 2305 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2305 ~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2622)
..+.+.++.+...+.. ..++.++++......|+.+..
T Consensus 824 ~~~~~~l~~~~~~i~~-~~~~~~~~~~~~~~~l~~~~~ 860 (888)
T d1qbkb_ 824 SGVIQDFIFFCDAVAS-WINPKDDLRDMFCKILHGFKN 860 (888)
T ss_dssp GGTGGGHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHH
Confidence 7777777766665533 234578888888888776643
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-22 Score=291.34 Aligned_cols=735 Identities=15% Similarity=0.170 Sum_probs=508.4
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh---
Q 000050 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGM--- 1650 (2622)
Q Consensus 1576 ~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~--- 1650 (2622)
.+...|...+.+.++.+|+.|.+.+..+... + .+..+..+.+.+.+ ....+|..|+..|.......
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~ 75 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSND--N-------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--C-------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--C-------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccch
Confidence 3455566666677788888888888776542 1 23355566666654 34678888777666544321
Q ss_pred -------------CCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh-HHHhHhHHHHHhccCC-ChhhHHH
Q 000050 1651 -------------GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ-RASVRDG 1715 (2622)
Q Consensus 1651 -------------g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~-~l~~llp~l~~~l~~~-~~~vR~~ 1715 (2622)
.++....+...+++.+.+. +..+|..++.+++.++....++ .|++++|.+++.+.+. ...+|.+
T Consensus 76 ~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~ 154 (861)
T d2bpta1 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSI-EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRA 154 (861)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHH
T ss_pred hhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHH
Confidence 1112223344556666554 4568888889999888764443 5788999999888765 4678999
Q ss_pred HHHHHHHhhhhhCcchhh---hHHhHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhccC
Q 000050 1716 YLTLFKYLPRSLGVQFQN---YLQQVLPAILDGLA--DENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIF 1785 (2622)
Q Consensus 1716 al~~l~~L~~~~g~~f~p---~l~~ii~~ll~~L~--d~~~~VR~~al~al~~lv~~~~~~-----~i~~llp~l~~~l~ 1785 (2622)
++.+|+.++...+..+.+ .+..+++.+++.+. +.+..+|..++.++..++..+... ..+.+++.+...+.
T Consensus 155 al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (861)
T d2bpta1 155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ 234 (861)
T ss_dssp HHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhc
Confidence 999999999888765544 45556666676664 455789999999988876654332 23446677778888
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHH-HHhccCCCHHHHHHH
Q 000050 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL-YMVRSDVSLSVRQAA 1864 (2622)
Q Consensus 1786 d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L-~~~~~D~~~~VR~aA 1864 (2622)
+.++.+|..+++.+..++...+.. +.. +...++..+ .....+.+..+|..+
T Consensus 235 ~~~~~~~~~~~~~l~~i~~~~~~~-----------------------~~~-----~l~~~l~~l~~~~~~~~~~~v~~~~ 286 (861)
T d2bpta1 235 AEDIEVQAAAFGCLCKIMSKYYTF-----------------------MKP-----YMEQALYALTIATMKSPNDKVASMT 286 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGG-----------------------CHH-----HHHHTHHHHHHHHTTCSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-----------------------HHH-----HHHHHHHHHHHHHhcCccHHHHHHH
Confidence 999999999999998887543210 000 111222222 234577788999999
Q ss_pred HHHHHHHHhhCh-----------------hhHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhccch
Q 000050 1865 LHVWKTIVANTP-----------------KTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERV 1920 (2622)
Q Consensus 1865 ~~~l~~l~~~~p-----------------~~l~~~l~~ll~~L~~~L~s-------~~~~~R~~A~~~L~~lv~~~~~~~ 1920 (2622)
++.|..++.... .....+++.+++.+...+.. .++..|..+..+++.+....|..+
T Consensus 287 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 366 (861)
T d2bpta1 287 VEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI 366 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhh
Confidence 999988765321 12345566677777776653 245788899999999999999999
Q ss_pred hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh
Q 000050 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2622)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2622)
.+.+.+.+...+.+.++..|.+++.+++.+....+.....++++.+++.+...+.|+++.||..++.+++.+.+..+...
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T d2bpta1 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhh
Confidence 99999999998999999999999999999887777777888999999999999999999999999999999988776532
Q ss_pred h-----hhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHh----CCChhhh
Q 000050 2001 I-----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA----GPGLNFH 2071 (2622)
Q Consensus 2001 ~-----~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~----g~~l~~~ 2071 (2622)
. ..+++.+...+.++.. .....+.++..+.... ...+.++
T Consensus 447 ~~~~~~~~ll~~l~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~ 495 (861)
T d2bpta1 447 DPQQHLPGVVQACLIGLQDHPK-------------------------------VATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp CTTTTHHHHHHHHHHHHTSCHH-------------------------------HHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred hhHHhhhhhhHHHHhccccChH-------------------------------HHHHHHHHHHHHHHHhhhcccchhhHH
Confidence 2 2223333322222110 0001222333333332 2345666
Q ss_pred HhhhHHHHHHhcC--CCCHHHHHHHHHHHHHhhhccChh---cHHHHHHHHHhh----cCCC-----------ChhHHHH
Q 000050 2072 LGTILPALLSAMG--DDDMDVQSLAKEAAETVTLVIDEE---GVESLVSELLKG----VGDN-----------QASIRRS 2131 (2622)
Q Consensus 2072 l~~il~~Ll~~l~--~~~~~vr~~a~~al~~l~~~~~~~---~l~~ll~~Ll~~----l~d~-----------~~~vR~~ 2131 (2622)
+..++..++.... +.+..++..+..++..++...+.. ....+++.+... +... ....+..
T Consensus 496 ~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (861)
T d2bpta1 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 7777777777653 345678888888998888766542 233333333222 2111 1234556
Q ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhh
Q 000050 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS-DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210 (2622)
Q Consensus 2132 A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~-d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~ 2210 (2622)
++.+++.++...+.++.++.+.++..++..+.+. +..+++.++.+++.++...+...
T Consensus 576 ~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~---------------------- 633 (861)
T d2bpta1 576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF---------------------- 633 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG----------------------
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHH----------------------
Confidence 6677778888888889999999999999988744 56788889989888876543221
Q ss_pred hcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC-CCHhhH
Q 000050 2211 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVK 2289 (2622)
Q Consensus 2211 ~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~-~~~~vk 2289 (2622)
.+++..++|.+..++.+.++.+|..|+.+++.++...+ +.+.||++.+++.|++.+++. .+.++|
T Consensus 634 -------------~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~-~~~~~~~~~i~~~L~~~l~~~~~~~~~k 699 (861)
T d2bpta1 634 -------------EKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELK 699 (861)
T ss_dssp -------------HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred -------------HHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH-HHhHhhHHHHHHHHHHHhCCCCCCHHHH
Confidence 13456788999999999999999999999999998887 789999999999999999764 456899
Q ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHh-ccc---ChhhHHHHH
Q 000050 2290 SAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-----------RTVRSSAALALGKLSA-LST---RVDPLVGDL 2354 (2622)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~-----------~~vR~~Aa~aLg~L~~-~~~---~~~~ll~~L 2354 (2622)
..++.+++.++..+|..+.||++++++.+.+.++... ..+|..+..++..++. +.. .+.|+++.+
T Consensus 700 ~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i 779 (861)
T d2bpta1 700 PAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTI 779 (861)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999886641 3578888888877743 111 233445544
Q ss_pred HH----hhhc----CCHhHHHHHHHHHHHHHhhcCCCCChHHH--HHHHHHHHHhhcCC--CHHHHHHHHHHH
Q 000050 2355 LS----SLQV----SDAGIREAILTALKGVLKHAGKSVSSAVK--IRVYSVLKDLVYHD--DDHVRVSAASIL 2415 (2622)
Q Consensus 2355 l~----~l~~----~d~~vr~~~l~AL~~vi~~~g~~~~~~~~--~~i~~~L~~~l~~~--~~~vr~~aa~~L 2415 (2622)
++ .+.+ .+.+++..++..++.++..+|......+. +.+..++.+...+. +...|..|..+.
T Consensus 780 ~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 852 (861)
T d2bpta1 780 FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAR 852 (861)
T ss_dssp HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHHHhhHHHHHHHHHHHhCcchhHHHHHHHHHHH
Confidence 43 3333 24677888888899988888764322222 33444454544443 556666654443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.8e-21 Score=279.04 Aligned_cols=745 Identities=14% Similarity=0.148 Sum_probs=493.4
Q ss_pred hHhHH-HHhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000050 1132 YSGLF-KALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2622)
Q Consensus 1132 ~~~Ll-~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~--- 1207 (2622)
+..+| ..+.++|+.+|+.|.+.|-.+.++.+.. .+..+.+.. .+ ...+-.+|..++..|+.....
T Consensus 6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~---~~~~l~~il----~~----~~~~~~~r~~A~i~lkn~i~~~~~ 74 (861)
T d2bpta1 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQ---FAGLSSQVL----ID----ENTKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHH----TC----TTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchH---HHHHHHHHH----Hc----CCCCHHHHHHHHHHHHHHhhcccc
Confidence 33444 4578999999999999998877665322 222232222 11 023457888888888765421
Q ss_pred -------------hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhc-cchhhhhHHHHHHHhcCCCCChhhh
Q 000050 1208 -------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDNVSLLFPIFENYLNKKASDEEKY 1273 (2622)
Q Consensus 1208 -------------~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g-~~~~~~llp~~~~~l~~~~~~~~~~ 1273 (2622)
++++....+.+.++ .++.++++.||..+..++..+++... ...|++++|.+.+.+.... .
T Consensus 75 ~~~~~~~~~~~~~i~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~-----~ 148 (861)
T d2bpta1 75 VKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-----P 148 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-----C
T ss_pred hhhhhHHhhhHhcCCHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCC-----c
Confidence 22222233444443 67789999999999998888777644 3479999999887776422 2
Q ss_pred hhhhhHHHHHHHHHhhhhccC----CcchHHHHHHHHHHcC--CCCHHHHHHHHhhhHhhHhhhccch------HHHHHH
Q 000050 1274 DLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDEA------PTLVSR 1341 (2622)
Q Consensus 1274 ~~vr~~~~~~~~~la~~l~~~----~~~v~~i~~~L~~~l~--~~~~~Vq~~a~~~L~~lv~~~~~~~------~~~i~~ 1341 (2622)
..+|.++..+++.+...+... -+.+..++..++..+. +++..||..+..++..++....... ...++.
T Consensus 149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (861)
T d2bpta1 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHh
Confidence 456778888888887655432 2345666777777664 4568999999999988876654321 122333
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhh--hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-------
Q 000050 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKLGR------- 1412 (2622)
Q Consensus 1342 Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~------- 1412 (2622)
+. .....++...|..+..++..++...+...... ..+...+....++. ++..|..++..+..+++....
T Consensus 229 l~-~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~ 306 (861)
T d2bpta1 229 VC-EATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQ 306 (861)
T ss_dssp HH-HHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 33455678899999999999998766433211 11222233333444 788999998888877754221
Q ss_pred ----------cchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhH
Q 000050 1413 ----------LFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 1475 (2622)
Q Consensus 1413 ----------~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r 1475 (2622)
...+++..++|.++..+.+ ....+|..+..++..++...+...+..+++.+...+.+.+|+.|
T Consensus 307 ~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (861)
T d2bpta1 307 FPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNR 386 (861)
T ss_dssp CTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHH
Confidence 1234556778888887753 23478999999999999888877777788887888889999999
Q ss_pred HHHHHHHHHHHhhC-chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH
Q 000050 1476 QSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2622)
Q Consensus 1476 ~~a~~~L~~la~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r 1554 (2622)
.+++..++.++... +..+..+++.+++.+.+.+.|+++.||.+++++++.+++.++.... +
T Consensus 387 ~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------------~----- 448 (861)
T d2bpta1 387 EAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID-------------P----- 448 (861)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-------------T-----
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhh-------------h-----
Confidence 99999999999754 4556778899999999999999999999999999999876642100 0
Q ss_pred HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCC--CCcccchHhhhHHHHHHHhc--C
Q 000050 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLV--D 1630 (2622)
Q Consensus 1555 ~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~--d 1630 (2622)
...+..+++.+...+.+ ++.++..++..+..++....+ .....++...++..+..... +
T Consensus 449 ----------------~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 511 (861)
T d2bpta1 449 ----------------QQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID 511 (861)
T ss_dssp ----------------TTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC
T ss_pred ----------------HHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhh
Confidence 00111223333333322 355666666666666554332 13355666677777776654 4
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhh----c---CCh-------HHHHHHHHHHHHHHHHhchh-
Q 000050 1631 PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS----D---NSN-------VERSGAAQGLSEVLAALGTV- 1692 (2622)
Q Consensus 1631 ~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~----~---~~~-------~~r~~a~~~L~~i~~~~g~~- 1692 (2622)
....+|..+..+++.++...++. +...+.+.+...+.. . ... ..+......++.+....+..
T Consensus 512 ~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 591 (861)
T d2bpta1 512 NEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSV 591 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGT
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhH
Confidence 56789999999999999988765 233444444333321 1 011 11223334455555554433
Q ss_pred --HHHhHhHHHHHhccC-CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 000050 1693 --YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2622)
Q Consensus 1693 --~l~~llp~l~~~l~~-~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~ 1769 (2622)
+.+.+++.+++.+.. .+..+|+.++.+++.++..+|..|.||++.++|.++.++.+.++.+|..+...+..+....+
T Consensus 592 ~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~ 671 (861)
T d2bpta1 592 EPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp GGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH
Confidence 345666666666654 46779999999999999999999999999999999999999998999888887777665543
Q ss_pred hchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHH
Q 000050 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2622)
Q Consensus 1770 ~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L 1849 (2622)
... .|. .++++..+
T Consensus 672 ~~~----~~~--------------------------------------------------------------~~~i~~~L 685 (861)
T d2bpta1 672 EDF----RRY--------------------------------------------------------------SDAMMNVL 685 (861)
T ss_dssp GGG----HHH--------------------------------------------------------------HHHHHHHH
T ss_pred HHh----Hhh--------------------------------------------------------------HHHHHHHH
Confidence 321 110 01112222
Q ss_pred HHhc--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHHh
Q 000050 1850 YMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRKL 1916 (2622)
Q Consensus 1850 ~~~~--~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~-----------~~~R~~A~~~L~~lv~~~ 1916 (2622)
...+ .+.+..+|..++.+++.++.+.+..+.+|++.+++.+.+.+.... ...|..+..++..++...
T Consensus 686 ~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 765 (861)
T d2bpta1 686 AQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGL 765 (861)
T ss_dssp HHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 223457889999999999998888999999999999988876432 235778888888887765
Q ss_pred ccc------hhhhHHHHHhhhcCC----CChhhHHhHHHHHHHHHHhhChhhHHHhH--HhHHHHHHHHhc--CCcHHHH
Q 000050 1917 GER------VLPSIIPILSRGLKD----PSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALC--DSILEVR 1982 (2622)
Q Consensus 1917 ~~~------~l~~llp~L~~~L~d----~~~~vR~~a~~~L~~li~~~~~~~l~~~l--~~ll~~l~~~L~--d~d~~VR 1982 (2622)
... +.+.+++.+...+.+ .+.+++..++..+|.++..++.....+++ +.+...+..... +.+...|
T Consensus 766 ~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 845 (861)
T d2bpta1 766 HDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATK 845 (861)
T ss_dssp TTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHHHhhHHHHHHHHHHHhCcchhHHHH
Confidence 433 245555555555554 35677788888899988877654444433 233344555544 3467788
Q ss_pred HHHHHHHHHHHHHh
Q 000050 1983 ESAGLAFSTLFKSA 1996 (2622)
Q Consensus 1983 ~~A~~al~~l~~~~ 1996 (2622)
+.|..|...+.+..
T Consensus 846 ~~~~~~~~~~~~~~ 859 (861)
T d2bpta1 846 DTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 87777776665443
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.3e-22 Score=289.21 Aligned_cols=763 Identities=15% Similarity=0.177 Sum_probs=482.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH------------------
Q 000050 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE------------------ 1118 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~------------------ 1118 (2622)
||+.++|++++|||+++|++|+++|+.....+ .|.+...+..+. ...+.+...|.+|.
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---~~~f~~~L~~i~-~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~ 76 (876)
T d1qgra_ 1 MELITILEKTVSPDRLELEAAQKFLERAAVEN---LPTFLVELSRVL-ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CCHHHHHHHHhCcCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence 57899999999999999999999998754221 122222233322 22334556666653
Q ss_pred -HHHHhcCCCCCCCh-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000050 1119 -DIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194 (2622)
Q Consensus 1119 -~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~~-~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R 1194 (2622)
..|...+.+.++.+ ..+++.+.+++ .+|+.+|++++.++.. +| +.|+++++.+.+.... + +.+...|
T Consensus 77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~---~-----~~~~~~~ 147 (876)
T d1qgra_ 77 QQRWLAIDANARREVKNYVLHTLGTET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTN---P-----NSTEHMK 147 (876)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC---T-----TCCHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcC---C-----CCcHHHH
Confidence 23554443333335 67788888776 4677889999988642 33 2344444444433211 1 2345689
Q ss_pred hHHHHHHHHhhhhhCCCC----hhHHHHHHHhhhc--CCCCHHHHHHHHHHHHHHHHHhccc-----hhhhhHHHHHHHh
Q 000050 1195 QGIALALHSAADVLRTKD----LPVIMTFLISRAL--ADTNADVRGRMLNAGIMIIDKHGRD-----NVSLLFPIFENYL 1263 (2622)
Q Consensus 1195 ~~~~~al~~~~~~~~~~~----~~~i~~~li~~~l--~d~~~~VR~~a~~a~~~~i~~~g~~-----~~~~llp~~~~~l 1263 (2622)
.++..+|.++++.+.++. .+.++..++ .++ .+.+..+|..++.+....+...... ....+++.+...+
T Consensus 148 ~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~-~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 226 (876)
T d1qgra_ 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAII-QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHH-HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999987665433 234555554 344 3567889999988887665443321 1234555565555
Q ss_pred cCCCCChhhhhhhhhHHHHHHHHHhhhhcc-CCcch-HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhc---------
Q 000050 1264 NKKASDEEKYDLVREGVVIFTGALAKHLAK-DDPKV-HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ--------- 1332 (2622)
Q Consensus 1264 ~~~~~~~~~~~~vr~~~~~~~~~la~~l~~-~~~~v-~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~--------- 1332 (2622)
... +..++..++.++..+...... ..+++ +.+...+.....+..++++..+...+..+.....
T Consensus 227 ~~~------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 300 (876)
T d1qgra_ 227 QCP------DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (876)
T ss_dssp TCS------SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC------CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 532 235677888888887764322 22333 2345566777888888888777665544332110
Q ss_pred ------c-----c-----hHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCC
Q 000050 1333 ------D-----E-----APTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR 1390 (2622)
Q Consensus 1333 ------~-----~-----~~~~i~~Ll~~L~~------~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~ 1390 (2622)
. . ...+++.+.+.+.. .++|..|..|..++..+....+...+. .+++++.+.+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~i~~~l~~~ 378 (876)
T d1qgra_ 301 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP--HVLPFIKEHIKNP 378 (876)
T ss_dssp HHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHTTCS
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHhhccc
Confidence 0 0 12333334443332 235678999999999999888876664 6888999998887
Q ss_pred CCHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----hHHhhHHHHH
Q 000050 1391 NSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----GVKLVLPSLL 1464 (2622)
Q Consensus 1391 ~~~~~R~~al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-----~v~~ilp~Ll 1464 (2622)
+|..|++++.+++.+++++. ..+.+++.++++.+...+.|+++.||.++..+++.+++.++.. .+..+++.++
T Consensus 379 -~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (876)
T d1qgra_ 379 -DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (876)
T ss_dssp -SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHH
Confidence 79999999999999887765 4578899999999999999999999999999999998876543 2466777777
Q ss_pred hhccCCChhhHHHHHHHHHHHHhhC--------------chhhhhhhhhhHHHHhhhhcCC---CHHHHHHHHHHHHHHh
Q 000050 1465 KGLEDKAWRTKQSSVQLLGAMAYCA--------------PQQLSQCLPKIVPKLTEVLTDT---HPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1465 ~~L~~~~w~~r~~a~~~L~~la~~~--------------p~~l~~~L~~ivp~L~~~L~D~---~~~VR~aA~~aL~~l~ 1527 (2622)
..+++ +++++..++..+..+.... ...+..+++.+++.+...+.+. +..++..+..++..+.
T Consensus 458 ~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 536 (876)
T d1qgra_ 458 EGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIV 536 (876)
T ss_dssp HHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhh
Confidence 77754 5778888888887776532 1234566778888888887653 5678899999888887
Q ss_pred hhcCC---hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 000050 1528 SVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2622)
Q Consensus 1528 ~~~~~---~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~ 1604 (2622)
....+ +.+..+++.+...+. .... ........... . ...+.+...+..+..+.
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~-----------~~l~--~~~~~~~~~~~----~-------~~~~~~~~l~~~l~~~~ 592 (876)
T d1qgra_ 537 KNSAKDCYPAVQKTTLVIMERLQ-----------QVLQ--MESHIQSTSDR----I-------QFNDLQSLLCATLQNVL 592 (876)
T ss_dssp HTCCSTTHHHHHHHHHHHHHHHH-----------HHHT--TTTSCCSTTHH----H-------HHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH-----------HHHH--Hhhhhcchhhh----H-------HHHHHHHHHHHHHHHHH
Confidence 66543 233333333332211 0000 00000000000 0 00123334445555555
Q ss_pred hhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcCChHHHHHHH
Q 000050 1605 SLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAA 1679 (2622)
Q Consensus 1605 ~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~r~~a~ 1679 (2622)
...+. ....++.+.+++.+...+.. ++..++..+..+++.++...|+. +++.++|.+...+.+.....+|..++
T Consensus 593 ~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~ 671 (876)
T d1qgra_ 593 RKVQH-QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAV 671 (876)
T ss_dssp TTSCH-HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHcch-hhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 44322 34566788899999888763 56789999999999999998875 67889999999998877677888888
Q ss_pred HHHHHHHHHhchh---HHHhHhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHH
Q 000050 1680 QGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVR 1754 (2622)
Q Consensus 1680 ~~L~~i~~~~g~~---~l~~llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR 1754 (2622)
..++.+....+.. +.+.+++.+++.+++. ++.+|..++.+++.++..+|..|.||++.++|.+.+.+....+...
T Consensus 672 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~ 751 (876)
T d1qgra_ 672 GLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSD 751 (876)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccc
Confidence 8888888877654 4577888888888764 5789999999999999999999999999999998887663221100
Q ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHH
Q 000050 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834 (2622)
Q Consensus 1755 ~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~ 1834 (2622)
....+.... +|.+++++.+.++....+... ......
T Consensus 752 ~~~~~~~~~---------------------------l~~~~~~~~~~i~~~~~~~~~---------~~~~~~-------- 787 (876)
T d1qgra_ 752 YDMVDYLNE---------------------------LRESCLEAYTGIVQGLKGDQE---------NVHPDV-------- 787 (876)
T ss_dssp HHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHCSSS---------SCCGGG--------
T ss_pred hhHHHHHHH---------------------------HHHHHHHHHHHHHHHhccccc---------cchhhH--------
Confidence 111111100 122223333333322211100 000000
Q ss_pred HHhChhhHHHHHHHHH--HhccCCCHHHHHHHHHHHHHHHhhChhhHHHHH---HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1835 EVLGRDKRNEVLAALY--MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM---PVLMNTLISSLASSSSERRQVAGRAL 1909 (2622)
Q Consensus 1835 ~~Lg~e~~~~il~~L~--~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l---~~ll~~L~~~L~s~~~~~R~~A~~~L 1909 (2622)
..+ .++...++..+. ....+.+..++..|+.+++.++...|....+.+ |.+.+.+.....++++..|..|..+.
T Consensus 788 ~~~-~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~ 866 (876)
T d1qgra_ 788 MLV-QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp GGS-GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 000 011112222111 123566788999999999999987776554443 56666677777888888888877766
Q ss_pred HHHH
Q 000050 1910 GELV 1913 (2622)
Q Consensus 1910 ~~lv 1913 (2622)
..+-
T Consensus 867 ~~~~ 870 (876)
T d1qgra_ 867 KELR 870 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.1e-20 Score=268.47 Aligned_cols=737 Identities=15% Similarity=0.177 Sum_probs=487.5
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh-----
Q 000050 1133 SGLFKALSHSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD----- 1206 (2622)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~----- 1206 (2622)
..+|....++|..+|+.|.+.|..+.++. |+.+..+++.+.+ . ..+-++|..++..|+....
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~-------~-----~~~~~iR~~A~i~lKn~i~~~~~~ 71 (876)
T d1qgra_ 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-------P-----GNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc-------C-----CCCHHHHHHHHHHHHHHhhccccc
Confidence 45677777999999999999999887664 4444444333321 1 2245789999999987653
Q ss_pred ----------hhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHH-hccchhhhhHHHHHHHhcCCCCChhhhhh
Q 000050 1207 ----------VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2622)
Q Consensus 1207 ----------~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~-~g~~~~~~llp~~~~~l~~~~~~~~~~~~ 1275 (2622)
.++++....+.+.++ .++.+.+. +|..+..++..++.. .+.+.|++++|.+.+.+..++. ...
T Consensus 72 ~~~~~~~~~~~i~~~~k~~ik~~ll-~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~----~~~ 145 (876)
T d1qgra_ 72 IKAQYQQRWLAIDANARREVKNYVL-HTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TEH 145 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CHH
T ss_pred hhhhhhcccccCCHHHHHHHHHHHH-HHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCC----cHH
Confidence 122233334555554 55666554 454555666555554 4556799999999888875332 345
Q ss_pred hhhHHHHHHHHHhhhhccC--CcchHHHHHHHHHHcCC--CCHHHHHHHHhhhHhhHhhhccc-----hHHHHHHHHHHH
Q 000050 1276 VREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQL 1346 (2622)
Q Consensus 1276 vr~~~~~~~~~la~~l~~~--~~~v~~i~~~L~~~l~~--~~~~Vq~~a~~~L~~lv~~~~~~-----~~~~i~~Ll~~L 1346 (2622)
+|+++...++.+.+.+... .+....+++.++..+.+ ++.+++..+.+++...+...... ....+...+..+
T Consensus 146 ~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~ 225 (876)
T d1qgra_ 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 6788888888887654322 45667788888888864 46789999998887766544321 122344444445
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCccchh--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc------------
Q 000050 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR------------ 1412 (2622)
Q Consensus 1347 ~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~------------ 1412 (2622)
...+++..|..+..++..++...+..... ...+.+.+.....+. +...+..++..+..+++....
T Consensus 226 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 304 (876)
T d1qgra_ 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 55667889999999999999876543221 123555566666665 567777777777766653211
Q ss_pred ---------cchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHH
Q 000050 1413 ---------LFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2622)
Q Consensus 1413 ---------~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~ 1476 (2622)
....+...++|.+...+.+ ....+|.++..++..++...+...+..++|.+.+.+.+.+|+.|.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~ 384 (876)
T d1qgra_ 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHH
Confidence 0112334566666665532 234699999999999999888888888999999999999999999
Q ss_pred HHHHHHHHHHhh-CchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh-----hHHhHHHHHHhhcCCCC
Q 000050 1477 SSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----EIASLVPTLLMGLTDPN 1550 (2622)
Q Consensus 1477 ~a~~~L~~la~~-~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-----~i~~ilp~Ll~~l~d~~ 1550 (2622)
+++..++.++.. .+..+..+++.+++.+...+.|+++.||.+|+++++.+++.+++. .+..+++.+...+.+
T Consensus 385 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 462 (876)
T d1qgra_ 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-- 462 (876)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC--
Confidence 999999998875 456778889999999999999999999999999999999876532 234444444444332
Q ss_pred hhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcC------------CCCcccchHh
Q 000050 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT------------EPKDMIPYIG 1618 (2622)
Q Consensus 1551 ~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~------------~~~~l~~~l~ 1618 (2622)
++.++..++..+..++.... ....+.+|++
T Consensus 463 --------------------------------------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (876)
T d1qgra_ 463 --------------------------------------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE 504 (876)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH
T ss_pred --------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455555555554443210 1134678899
Q ss_pred hhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHH----HhhhcC---ChHHH-------HHH
Q 000050 1619 LLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLD----ALKSDN---SNVER-------SGA 1678 (2622)
Q Consensus 1619 ~ll~~L~~~L~d~---~~~vR~~a~~aL~~L~~~~g~~~---~~~ll~~Ll~----~L~~~~---~~~~r-------~~a 1678 (2622)
.+++.+...+.+. ...+|..+..++..+......+. +..+++.++. .+.... ....+ ...
T Consensus 505 ~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 584 (876)
T d1qgra_ 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHH
Confidence 9999999988743 56789999999999888776552 2233333333 332111 11111 122
Q ss_pred HHHHHHHHHHhchhHH----HhHhHHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCC-h
Q 000050 1679 AQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-E 1751 (2622)
Q Consensus 1679 ~~~L~~i~~~~g~~~l----~~llp~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~-~ 1751 (2622)
...+..+....+.... +.+++.+.+.+.. .+..+++.++.+++.++...|..|.||++.++|.++..+.+.. .
T Consensus 585 ~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~ 664 (876)
T d1qgra_ 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEY 664 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcH
Confidence 3344555555555433 4566666666543 4678999999999999999999999999999999999987654 4
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHH
Q 000050 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2622)
Q Consensus 1752 ~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~ 1831 (2622)
++|..+...+..+....+.. +.|
T Consensus 665 ~v~~~a~~~l~~l~~~~~~~----~~~----------------------------------------------------- 687 (876)
T d1qgra_ 665 QVCLAAVGLVGDLCRALQSN----IIP----------------------------------------------------- 687 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGG----GHH-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHh----hhh-----------------------------------------------------
Confidence 57777776666555443322 000
Q ss_pred HHHHHhChhhHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCC----CH------
Q 000050 1832 AIIEVLGRDKRNEVLAALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS----SS------ 1899 (2622)
Q Consensus 1832 ~l~~~Lg~e~~~~il~~L~~~~~D--~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~----~~------ 1899 (2622)
+.+.++..++..+.+ .+..+|..++.+++.++...+..+.+|++.+++.+.+.+... +.
T Consensus 688 ---------~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~ 758 (876)
T d1qgra_ 688 ---------FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYL 758 (876)
T ss_dssp ---------HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHH
T ss_pred ---------hHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHH
Confidence 111222223323222 245688889999999998888888999999999888776521 11
Q ss_pred -HHHHHHHHHHHHHHHHhccc----------hh---hhHHHHHhhhc--CCCChhhHHhHHHHHHHHHHhhChhhHHHhH
Q 000050 1900 -ERRQVAGRALGELVRKLGER----------VL---PSIIPILSRGL--KDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2622)
Q Consensus 1900 -~~R~~A~~~L~~lv~~~~~~----------~l---~~llp~L~~~L--~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l 1963 (2622)
..|..+..+++.++...... .. +.++..+.... .+.+..++..++..++.++...|......+.
T Consensus 759 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~ 838 (876)
T d1qgra_ 759 NELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE 838 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24566777777776554211 12 22333333222 3456788888999999998888875544333
Q ss_pred --HhHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000050 1964 --DELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2622)
Q Consensus 1964 --~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2622)
+.+.+.+.....++++..|..|..+...+.+
T Consensus 839 ~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~ 871 (876)
T d1qgra_ 839 ARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp TSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5566777778888999999999887766643
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2e-13 Score=178.53 Aligned_cols=382 Identities=13% Similarity=0.154 Sum_probs=266.3
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhhC--
Q 000050 1133 SGLFKALSHSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR-- 1209 (2622)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~~~-- 1209 (2622)
..+++.+.++|..+|+.|.+.+-.+.++. |+.+..++..+.+ . ..+-.+|..++..|+.......
T Consensus 3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~-------~-----~~~~~~R~~A~i~lk~~l~~~~~~ 70 (458)
T d1ibrb_ 3 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-------P-----GNSQVARVAAGLQIKNSLTSKDPD 70 (458)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-------C-----CCCHHHHHHHHHHHHHHhhccCch
Confidence 45778888999999999999999888754 3444444444321 1 2234689888888876653211
Q ss_pred -------------CCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHH-HHHhccchhhhhHHHHHHHhcCCCCChhhhhh
Q 000050 1210 -------------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMI-IDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2622)
Q Consensus 1210 -------------~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~-i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~ 1275 (2622)
.+....+...++ .++.+.++.+|..+ .++..+ ....+...|+.+++.+.+.+..... ...
T Consensus 71 ~~~~~~~~~~~l~~~~~~~i~~~ll-~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~ 144 (458)
T d1ibrb_ 71 IKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRPSSAS-QCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TEH 144 (458)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSSCSHH-HHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CHH
T ss_pred hhhHHhhhhccCCHHHHHHHHHHHH-hccCCCcHHHHHHH-HHHHHHHHHhCCcccCcchhHHHHHHHHhhcc----hHH
Confidence 111222333443 55666666555543 444343 3345667799999998888765322 234
Q ss_pred hhhHHHHHHHHHhhhhcc--CCcchHHHHHHHHHHcCC--CCHHHHHHHHhhhHhhHhhhccc-----hHHHHHHHHHHH
Q 000050 1276 VREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQL 1346 (2622)
Q Consensus 1276 vr~~~~~~~~~la~~l~~--~~~~v~~i~~~L~~~l~~--~~~~Vq~~a~~~L~~lv~~~~~~-----~~~~i~~Ll~~L 1346 (2622)
.++.+...++.+...... ..+....+++.+...+.+ ++.+|+..+.+++..++...... ....+...+..+
T Consensus 145 ~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (458)
T d1ibrb_ 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 224 (458)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHH
Confidence 566777777777654432 245567788888888865 56899999999998877544321 122333444445
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCccchh--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc------------
Q 000050 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR------------ 1412 (2622)
Q Consensus 1347 ~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~------------ 1412 (2622)
....++..|..+..++..++...+..... ...+.+.+.....+. +...|..++..+..+++....
T Consensus 225 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~ 303 (458)
T d1ibrb_ 225 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 303 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 55667889999999999998776532211 113445555555655 678888898888888764321
Q ss_pred ---------cchhHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHH
Q 000050 1413 ---------LFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2622)
Q Consensus 1413 ---------~~~~~v~~ilp~ll~~l~-------D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~ 1476 (2622)
........+.|.+...+. |.+..+|.++..++..++...++..+..++|.+.+.+.+++|+.|.
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~ 383 (458)
T d1ibrb_ 304 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 383 (458)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHH
Confidence 012334566677766654 2344699999999999999888888888999999999999999999
Q ss_pred HHHHHHHHHHhhC-chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh
Q 000050 1477 SSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2622)
Q Consensus 1477 ~a~~~L~~la~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2622)
+++.+|+.+++.+ ++.+..+++.++|.+...++|+++.||.+|+++|+++++.++++
T Consensus 384 aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 384 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441 (458)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999754 56678889999999999999999999999999999999888653
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.2e-12 Score=171.04 Aligned_cols=392 Identities=17% Similarity=0.240 Sum_probs=278.9
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhC---------
Q 000050 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMG--------- 1651 (2622)
Q Consensus 1583 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~g--------- 1651 (2622)
.++.+.+.++|..|.+.+..+... + .+..+..+...+.+ ....+|..|+..+........
T Consensus 7 ~~~~s~d~~~r~~A~~~L~~~~~~--~-------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 7 EKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhc--C-------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 344566889999999999887652 1 23345555555544 356899999888877665322
Q ss_pred ------CCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhc-hhHHHhHhHHHHHhccC--CChhhHHHHHHHHHH
Q 000050 1652 ------EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-TVYFEHILPDIIRNCSH--QRASVRDGYLTLFKY 1722 (2622)
Q Consensus 1652 ------~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g-~~~l~~llp~l~~~l~~--~~~~vR~~al~~l~~ 1722 (2622)
++....+.+.+++.+.++.. .+..++..++.++.... ...+.++++.+.+.+.+ .++..+.+++.+++.
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 155 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETY--RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 155 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCS--SSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 11233455556666655532 34456677777766543 44567888888887765 467789999999999
Q ss_pred hhhhhC-cchhhhHHhHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhccCCCchHHHHH
Q 000050 1723 LPRSLG-VQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQS 1794 (2622)
Q Consensus 1723 L~~~~g-~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~lv~~~~~~-----~i~~llp~l~~~l~d~~~rvR~~ 1794 (2622)
+..... ..+.++...+++.+...+.+. ...+|..++.++..++...... ....+.+.+...+.+.++.+|..
T Consensus 156 ~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (458)
T d1ibrb_ 156 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235 (458)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHH
Confidence 987765 456778899999999998754 4679999998888776433221 22346677777788999999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Q 000050 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN 1874 (2622)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~ 1874 (2622)
+++.++.++...+.... ..+. +.+...+.....+....++..|++.|..++..
T Consensus 236 ~~~~l~~i~~~~~~~~~-----------------------~~l~----~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~ 288 (458)
T d1ibrb_ 236 ALQNLVKIMSLYYQYME-----------------------TYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDE 288 (458)
T ss_dssp HHHHHHHHHHHCGGGCT-----------------------TTTT----TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH-----------------------HHHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 99999998765432100 0000 00111112234566778999999999888653
Q ss_pred Chh---------------------hHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHH
Q 000050 1875 TPK---------------------TLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2622)
Q Consensus 1875 ~p~---------------------~l~~~l~~ll~~L~~~L~-------s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp 1926 (2622)
... .....++.+.+.+...+. +.++..|..+..+++.++...|..+++.++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ 368 (458)
T d1ibrb_ 289 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP 368 (458)
T ss_dssp HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHH
Confidence 211 123456666777666654 2344689999999999999999889999999
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh-hhhhH
Q 000050 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-IDEIV 2005 (2622)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~-~~~il 2005 (2622)
.+.+.++++++.+|.+++.+|+.++..+.+..+.++++.++|.+...+.|+++.||.+|+.+++++.+..+... .+.++
T Consensus 369 ~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l 448 (458)
T d1ibrb_ 369 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 448 (458)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHH
Confidence 99999999999999999999999877666667788999999999999999999999999999999988776533 24456
Q ss_pred HHHHHhc
Q 000050 2006 PTLLHAL 2012 (2622)
Q Consensus 2006 p~Ll~~L 2012 (2622)
|.++..|
T Consensus 449 ~~ll~~l 455 (458)
T d1ibrb_ 449 APLLQCL 455 (458)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=4.2e-09 Score=151.06 Aligned_cols=255 Identities=11% Similarity=0.145 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhc------cCCChhhHHHHHHHHHHHHhhCc--h----------hhhhh
Q 000050 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL------EDKAWRTKQSSVQLLGAMAYCAP--Q----------QLSQC 1496 (2622)
Q Consensus 1435 ~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L------~~~~w~~r~~a~~~L~~la~~~p--~----------~l~~~ 1496 (2622)
..|.++...+..+....++.....+++.+.+.+ .+.+|+.+.+++.++++++.... . .+...
T Consensus 376 ~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 455 (959)
T d1wa5c_ 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (959)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHH
Confidence 467777888888877766665555555554433 24689999999999999875311 1 11222
Q ss_pred hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhh
Q 000050 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~ 1576 (2622)
+...+...+....+.++.+|..++++++.+.....++....+++.+...
T Consensus 456 l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~------------------------------- 504 (959)
T d1wa5c_ 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATF------------------------------- 504 (959)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-------------------------------
Confidence 2222222223335667889999999999998776544444455554444
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCC---------CCcccchHhhhHHHHHHHhcCCCHHH-----HHHHHHH
Q 000050 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE---------PKDMIPYIGLLLPEVKKVLVDPIPEV-----RSVAARA 1642 (2622)
Q Consensus 1577 i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~~l~~~l~~ll~~L~~~L~d~~~~v-----R~~a~~a 1642 (2622)
+.+.+..+|..|+.++..++..... .+.+.||++.++..+...+.+..... ......+
T Consensus 505 --------L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~ 576 (959)
T d1wa5c_ 505 --------LQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576 (959)
T ss_dssp --------TTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred --------hCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 4444556777777777777754322 13478999999999988886543322 3458889
Q ss_pred HHHHHhhhCCC---CchhhHHHHHHHhh----hcCChHHHHHHHHHHHHHHHHhchhHH----HhHhHHHHHhccCCChh
Q 000050 1643 IGSLIRGMGEE---NFPDLVSWLLDALK----SDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRAS 1711 (2622)
Q Consensus 1643 L~~L~~~~g~~---~~~~ll~~Ll~~L~----~~~~~~~r~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~~~~~ 1711 (2622)
++.++...++. +.+.+++.+...+. ++...........+++.++...+.+.. +.++|.+...++.....
T Consensus 577 l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~ 656 (959)
T d1wa5c_ 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQE 656 (959)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchh
Confidence 99999888865 34455555544432 222233444566777777776665533 44566666655555556
Q ss_pred hHHHHHHHHHHhhhhhC
Q 000050 1712 VRDGYLTLFKYLPRSLG 1728 (2622)
Q Consensus 1712 vR~~al~~l~~L~~~~g 1728 (2622)
..+.++..+..+....+
T Consensus 657 ~~~~~~~l~~~~~~~~~ 673 (959)
T d1wa5c_ 657 FIPYVFQIIAFVVEQSA 673 (959)
T ss_dssp THHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 66777777776665544
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.3e-10 Score=154.70 Aligned_cols=466 Identities=15% Similarity=0.130 Sum_probs=293.2
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhc----HHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhccc--
Q 000050 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG----VESLVSELLKGVGD-NQASIRRSSAYLIGYFYKNSKL-- 2145 (2622)
Q Consensus 2073 ~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~----l~~ll~~Ll~~l~d-~~~~vR~~A~~~L~~l~~~~~~-- 2145 (2622)
...+|.|++.+++++..+|..+..++..+...-.... -..+++.++..+.+ +++.++..|+.++..++.....
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence 4568999999999999999999999988864321111 13467777777754 5688999999999998754321
Q ss_pred cccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCc
Q 000050 2146 YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK 2225 (2622)
Q Consensus 2146 ~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~ 2225 (2622)
.+.. ...++.|+.++.+++++++..|..+|..++...+... +.+..
T Consensus 96 ~i~~--~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~---------~~~~~----------------------- 141 (529)
T d1jdha_ 96 AIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK---------MAVRL----------------------- 141 (529)
T ss_dssp HHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH---------HHHHH-----------------------
T ss_pred HHHH--CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh---------hHHHh-----------------------
Confidence 1111 2468999999999999999999999999876543211 11110
Q ss_pred CchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCC
Q 000050 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2622)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2622)
...+|.++..+.+++.+++..++.+++.++...........-....++|++.+.......++..+..++..+... +
T Consensus 142 --~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~- 217 (529)
T d1jdha_ 142 --AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-S- 217 (529)
T ss_dssp --HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-T-
T ss_pred --cCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-c-
Confidence 114677778888889999999999999998654322222222345678888887665677888888888877532 1
Q ss_pred CccC-ch-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc---cChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhc
Q 000050 2306 ALKP-FL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALS---TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHA 2380 (2622)
Q Consensus 2306 ~l~p-~l-~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~---~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~ 2380 (2622)
..++ +. ....+.+.+.+.+++..++..++.++..+.... ......++.|+..+++.+..++..++.+|..+....
T Consensus 218 ~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~ 297 (529)
T d1jdha_ 218 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred cccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccch
Confidence 1111 11 124567778888999999999999999885432 224578999999999889999999999999886431
Q ss_pred CCCCChHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhhcCchH-HHHH------HHHHHhhcCC-CCchhhHhHH
Q 000050 2381 GKSVSSAVKIRVYSVLKDLV--YHDDDHVRVSAASILGIMSQCMEDGQ-LADL------LQELLNLASS-PSWAARHGSV 2450 (2622)
Q Consensus 2381 g~~~~~~~~~~i~~~L~~~l--~~~~~~vr~~aa~~Lg~L~~~~~~~~-~~~~------l~~ll~~~~~-~~~~~r~~~~ 2450 (2622)
............+..+...+ ....+.++..++.+++.++...+... .... ++.++..+.. .++.......
T Consensus 298 ~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~ 377 (529)
T d1jdha_ 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred hHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHH
Confidence 11100001112233333333 24567788889999999886654432 1111 2223343333 3333333333
Q ss_pred HHHHHHHhhCCcc---ccCChhHHHHHHHHHhhhcc---------------C---ChhHHHhHHHHHHHHHhhhhhcCCC
Q 000050 2451 LVFATFLRHNPSA---ISMSPLFLSILDRLKSSLKD---------------E---KFPLREASTKALGRLLLHQIQSGPA 2509 (2622)
Q Consensus 2451 ~~L~~~l~~~~~~---i~~~~~~~~i~~~l~~~~~~---------------~---~~~ir~~a~~alg~ll~~~~~~~~~ 2509 (2622)
.++..+. .+++. +...+..+.+++.+.....+ + ...++..+..+++.+......+
T Consensus 378 ~~l~~l~-~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r--- 453 (529)
T d1jdha_ 378 GLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR--- 453 (529)
T ss_dssp HHHHHHT-TSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHH---
T ss_pred HHHhhcc-hhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHH---
Confidence 3444332 22221 22223333344443321110 0 1234454555554432221110
Q ss_pred Cchhh--HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hhHHHHHHhhhcCCcchhhchhHHHHHHH
Q 000050 2510 NTTVV--VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTPVRLAAERCAVHA 2584 (2622)
Q Consensus 2510 ~~~~l--~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~vk~aae~a~~~~ 2584 (2622)
..+ ...++.++..+.+++.++|+.++.++..++++ ++. ...+ ...+++|.+.+.+.|..|+.+|-.|+..+
T Consensus 454 --~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~-~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 454 --IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEA-AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp --HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHH-HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC-hhh-HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 111 23577888889899999999999999999865 222 2222 34789999999999999998877776554
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=1.5e-07 Score=134.58 Aligned_cols=682 Identities=11% Similarity=0.075 Sum_probs=353.4
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCC--CHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCC
Q 000050 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT--HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549 (2622)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~--~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~ 1549 (2622)
..+|+.|-.-|..+.. . |+....|+..+.++ +..||..|.-.|++..+..-++. ++
T Consensus 17 ~~~~k~Ae~~L~~~~~-~--------p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~-------------~~ 74 (959)
T d1wa5c_ 17 ASTAKTSERNLRQLET-Q--------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDE-------------NG 74 (959)
T ss_dssp GGGHHHHHHHHHHHHT-S--------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS-------------SS
T ss_pred hHHHHHHHHHHHHHHc-C--------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc-------------cc
Confidence 3456666666655432 1 34445555555443 35688888877777665321100 00
Q ss_pred ChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc
Q 000050 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629 (2622)
Q Consensus 1550 ~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~ 1629 (2622)
. +.+.+..-..+-..+...+.+.+..+|...+.+++.++.. .-| ..+|.+++.+.+.++
T Consensus 75 ~----------------~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~-d~p----~~Wp~ll~~l~~~l~ 133 (959)
T d1wa5c_ 75 N----------------HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS-DFP----DRWPTLLSDLASRLS 133 (959)
T ss_dssp C----------------BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-HST----TTCTTHHHHHHTTCC
T ss_pred c----------------CCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-hCc----cccHHHHHHHHHHhC
Confidence 0 0011111222333344444456678999999999998875 222 236789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCC------------chhhHHHHHHHhh-------hcCChHHHHH-HHHHH---HHHH
Q 000050 1630 DPIPEVRSVAARAIGSLIRGMGEEN------------FPDLVSWLLDALK-------SDNSNVERSG-AAQGL---SEVL 1686 (2622)
Q Consensus 1630 d~~~~vR~~a~~aL~~L~~~~g~~~------------~~~ll~~Ll~~L~-------~~~~~~~r~~-a~~~L---~~i~ 1686 (2622)
++++..+..+..++..+++...... .+.+.+.+...+. +......... ....+ ..+.
T Consensus 134 s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (959)
T d1wa5c_ 134 NDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLY 213 (959)
T ss_dssp SSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 9889999999999999987654221 1122232222221 1111101111 11111 1111
Q ss_pred HHh----chhHHHh----HhHHHHHhccCC---------------ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHH
Q 000050 1687 AAL----GTVYFEH----ILPDIIRNCSHQ---------------RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743 (2622)
Q Consensus 1687 ~~~----g~~~l~~----llp~l~~~l~~~---------------~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll 1743 (2622)
... -.+.+.+ ++..+...+... ...+|...+..+..+....+..|.||++.+++.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (959)
T d1wa5c_ 214 YDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITW 293 (959)
T ss_dssp HHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 111 0112222 222222222211 12466777888888888888889999988888777
Q ss_pred hhcC-----CCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCC
Q 000050 1744 DGLA-----DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818 (2622)
Q Consensus 1744 ~~L~-----d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~ 1818 (2622)
..+. ...+.+...++..+..++...... ....+. . ..-+.+..++...-.... . +
T Consensus 294 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~----------~~~~~~-~----~l~~i~~~li~~~~~~~~-~----d 353 (959)
T d1wa5c_ 294 NLLTSISNQPKYDILVSKSLSFLTAVTRIPKYF----------EIFNNE-S----AMNNITEQIILPNVTLRE-E----D 353 (959)
T ss_dssp HHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHH----------GGGCSH-H----HHHHHHHHTHHHHHSCCG-G----G
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHhhHHHH----------HHHhhh-h----HHHHHHHHHHHHHhcCCH-H----H
Confidence 6553 223444444444444433211100 000000 0 000112222211110000 0 0
Q ss_pred CCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHH-HHHHHHHHHHhc--
Q 000050 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLA-- 1895 (2622)
Q Consensus 1819 ~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l-~~ll~~L~~~L~-- 1895 (2622)
.+.-+.+.++. +.+.. ..+.....|.+|...+..++...+....+.+ +.+...+.....
T Consensus 354 ~e~~~~dp~~~---~~~~~---------------~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 415 (959)
T d1wa5c_ 354 VELFEDDPIEY---IRRDL---------------EGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP 415 (959)
T ss_dssp TTTTTTCHHHH---HHHHH---------------HC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcchHHH---HHHHh---------------hhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCC
Confidence 00000011110 00000 1222346789999999999988776543332 222222222222
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcc------------chhhhHHHHHhhhc---CCCChhhHHhHHHHHHHHHHhhChhhHH
Q 000050 1896 SSSSERRQVAGRALGELVRKLGE------------RVLPSIIPILSRGL---KDPSASRRQGVCIGLSEVMASAGKSQLL 1960 (2622)
Q Consensus 1896 s~~~~~R~~A~~~L~~lv~~~~~------------~~l~~llp~L~~~L---~d~~~~vR~~a~~~L~~li~~~~~~~l~ 1960 (2622)
+.++..|..+...++.+....+. .+.+.+.+.+...+ .++.+.+|..++..++....... .
T Consensus 416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~----~ 491 (959)
T d1wa5c_ 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----K 491 (959)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----H
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc----H
Confidence 35778888888888877643211 01122222222222 34567788888888887644332 4
Q ss_pred HhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh----------hhhhhhHHH----HHHhcccCCchhHHHHHHH
Q 000050 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM----------QAIDEIVPT----LLHALEDDQTSDTALDGLK 2026 (2622)
Q Consensus 1961 ~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~----------~~~~~ilp~----Ll~~L~~~~~~~~aL~~L~ 2026 (2622)
++...+++.+...+.|++..||..|+.++..+...... ..+.+.++. ++..+.........
T Consensus 492 ~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~----- 566 (959)
T d1wa5c_ 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK----- 566 (959)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhh-----
Confidence 56688899999999999999999999999988654321 112222222 22222111100000
Q ss_pred HHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhc----C-CCCHHHHHHHHHHHHHh
Q 000050 2027 QILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM----G-DDDMDVQSLAKEAAETV 2101 (2622)
Q Consensus 2027 ~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l----~-~~~~~vr~~a~~al~~l 2101 (2622)
.........++..+.+..+..+.|+.+.+++.+...+ . ..++.......+++..+
T Consensus 567 --------------------~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l 626 (959)
T d1wa5c_ 567 --------------------LAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (959)
T ss_dssp --------------------HTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 0001123456677777788899999999888887754 2 23466677778888888
Q ss_pred hhccChhc----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000050 2102 TLVIDEEG----VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2622)
Q Consensus 2102 ~~~~~~~~----l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL 2177 (2622)
+...+.+. ...++|.+...+..........+...+..+....+. +.+.+.++++.++....+........+...+
T Consensus 627 ~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 705 (959)
T d1wa5c_ 627 LNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSAT-IPESIKPLAQPLLAPNVWELKGNIPAVTRLL 705 (959)
T ss_dssp HHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSS-CCTTTGGGHHHHTSGGGGCCTTTHHHHHHHH
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHhhHHHHHHhhhHHHHHHHH
Confidence 77665443 344556555555554455566677777766655432 2222233333333222111111222222222
Q ss_pred HHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 000050 2178 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 2257 (2622)
Q Consensus 2178 ~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~ 2257 (2622)
..++...+ + .+ .+...++.++...+.... .+..++..++.++
T Consensus 706 ~~~~~~~~-------------------~-----------~~------~~~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii 747 (959)
T d1wa5c_ 706 KSFIKTDS-------------------S-----------IF------PDLVPVLGIFQRLIASKA--YEVHGFDLLEHIM 747 (959)
T ss_dssp HHHHHHHG-------------------G-----------GC------SCSHHHHHHHHHHHTCTT--THHHHHHHHHHHH
T ss_pred HHHHHhCH-------------------H-----------hh------cchHHHHHHHHHHHCCCc--chHHHHHHHHHHH
Confidence 22211100 0 01 123345666655554332 2356788899999
Q ss_pred hhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHh
Q 000050 2258 EVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 2302 (2622)
Q Consensus 2258 ~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~ 2302 (2622)
...+.+.+.++++.+...++..+.......+....+..++.++..
T Consensus 748 ~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 792 (959)
T d1wa5c_ 748 LLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNK 792 (959)
T ss_dssp HHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHCchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 999867789999999999998887665666666666677766544
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.3e-09 Score=144.74 Aligned_cols=460 Identities=11% Similarity=0.067 Sum_probs=292.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc-----chHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-ccch
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSL 1374 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~-----~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg-~~~l 1374 (2622)
.++.|++.+++.+.++|..++.++..+...... .....++.++..|...++...++.|+.+|..+...-. ...+
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 97 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence 467889999999999999999999887643221 1246788888888777777889999999988865322 1222
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000050 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2622)
Q Consensus 1375 ~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~-v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2622)
.....++.|...+.+. ++..+..|+.++..++...+..-... -...+|.++..+.++++.++..+..++..+...-..
T Consensus 98 ~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 176 (529)
T d1jdha_ 98 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhH
Confidence 2346688888888876 78999999999999887654211111 235789999999999999999999999888654222
Q ss_pred Hh----HHhhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1454 QG----VKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1454 ~~----v~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
.. -...++.++..+.+ +....+..++.++..++........-.-...++.+...+.+.+.+++..++.++..+..
T Consensus 177 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~ 256 (529)
T d1jdha_ 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccc
Confidence 21 13457777777754 44577888888888887543322111123577889999999999999999999988864
Q ss_pred hcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcC
Q 000050 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2622)
Q Consensus 1529 ~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2622)
...... .....++.+.+.+.+.+..++..++.++++++..
T Consensus 257 ~~~~~~--------------------------------------~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~-- 296 (529)
T d1jdha_ 257 AATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 296 (529)
T ss_dssp TCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--
T ss_pred cccchh--------------------------------------hhhhcchhhhhhcccccHHHHHHHHHHHHhhccc--
Confidence 332110 0012445555666666777888888888877642
Q ss_pred CCCcccc--hHhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhhhcCChHHHHH
Q 000050 1609 EPKDMIP--YIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2622)
Q Consensus 1609 ~~~~l~~--~l~~ll~~L~~~L~--d~~~~vR~~a~~aL~~L~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~r~~ 1677 (2622)
++ .... .-...++.+...+. .+.+.++..+..+++.++...... .....++.++..+..+.....+..
T Consensus 297 ~~-~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~ 375 (529)
T d1jdha_ 297 NY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp CH-HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred hh-HHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHH
Confidence 11 1110 11234555555542 456789999999999887532211 112346677777766555544555
Q ss_pred HHHHHHHHHHHhch-hHH--HhHhHHHHHhccCC----------------------ChhhHHHHHHHHHHhhhhhCcchh
Q 000050 1678 AAQGLSEVLAALGT-VYF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQ 1732 (2622)
Q Consensus 1678 a~~~L~~i~~~~g~-~~l--~~llp~l~~~l~~~----------------------~~~vR~~al~~l~~L~~~~g~~f~ 1732 (2622)
+...+..+...... ..+ ...++.+++.+.+. ...+.+.+..++..++........
T Consensus 376 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~ 455 (529)
T d1jdha_ 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHH
Confidence 55555554332111 111 22344444433221 134455555555555432211100
Q ss_pred hhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh-hchh--hhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000050 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1733 p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~-~~~i--~~llp~l~~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
---...++++.+.+.++++++|..+..++..+...-. .+.+ ...++.+.+.+.+.++.+|..+...+..+
T Consensus 456 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 0013478889999999999999999998877643211 1111 12567788888999999999888777653
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=1.9e-09 Score=139.13 Aligned_cols=393 Identities=15% Similarity=0.155 Sum_probs=260.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
+..+++.+..+++.++..|..+++.+.+.-.. +.+ ..++|.+++.|.+ +++.++..++.+|..++...++....
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~ 94 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 94 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhH
Confidence 44556778888999999999999887653332 122 3589999999965 45788999999999999776554322
Q ss_pred h-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC--hhH--HhHHHHHHhhcCCCChhHHHHHHHHHhccccccCC
Q 000050 1496 C-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2622)
Q Consensus 1496 ~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~ 1570 (2622)
. -..++|.+..++.++++.+++.|+++|+.++..-++ ..+ ...++.+...+..+....
T Consensus 95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~----------------- 157 (434)
T d1q1sc_ 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST----------------- 157 (434)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGG-----------------
T ss_pred hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhccccc-----------------
Confidence 2 246789999999999999999999999999753211 001 233444444443322110
Q ss_pred hhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000050 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2622)
Q Consensus 1571 ~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~ 1650 (2622)
........+...+.+++... .......+...+++.+...+.+++++++..++.+++.++...
T Consensus 158 -----------------~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~ 219 (434)
T d1q1sc_ 158 -----------------LACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 219 (434)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTCCC-TTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred -----------------chHHHHHHHHHHHHHHhhcc-cccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhh
Confidence 01223334455566666532 112222345678899999999999999999999999987542
Q ss_pred CCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh--H-H-HhHhHHHHHhccCCChhhHHHHHHHHHH
Q 000050 1651 GEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2622)
Q Consensus 1651 g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~al~~l~~ 1722 (2622)
.+. ....++|.+.+.+.++. ...+..++.+++.++...... . + ...++.+...+.++++.+|..++.++..
T Consensus 220 ~~~~~~~~~~~~~~~Lv~ll~~~~-~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~ 298 (434)
T d1q1sc_ 220 NERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 298 (434)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhHHHHhhcccchhcccccccch-hhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhh
Confidence 211 23467788888776654 456777777777765422111 1 1 3456778888889999999999999999
Q ss_pred hhhhhCcchhhhH-HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhh-----hHHHHhhccCCCchHHHHHHH
Q 000050 1723 LPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-----LLPAVEDGIFNDNWRIRQSSV 1796 (2622)
Q Consensus 1723 L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~-----llp~l~~~l~d~~~rvR~~a~ 1796 (2622)
++........... ..++|.++..+.+.+..+|..+..++..+......+.... +++.+.+.+.+.+++++..++
T Consensus 299 l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l 378 (434)
T d1q1sc_ 299 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 378 (434)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred hccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHH
Confidence 9865433222222 2388999999999999999999999988876654443222 578888888889999999999
Q ss_pred HHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000050 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871 (2622)
Q Consensus 1797 ~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l 1871 (2622)
..+..++...... . ..+.... ..+..| .+..+....++.+.+|++.|..++...
T Consensus 379 ~~l~~ll~~~~~~---------~-----~~~~~~~-~~~~~~------~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 379 DAISNIFQAAEKL---------G-----ETEKLSI-MIEECG------GLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp HHHHHHHHHHHTT---------T-----CHHHHHH-HHHHTT------SHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---------C-----CcHHHHH-HHHHcC------CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9998887543211 0 0111111 222222 111122224677899999998887543
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=2.9e-09 Score=137.39 Aligned_cols=390 Identities=15% Similarity=0.172 Sum_probs=249.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-----hhhhHHHHHhhhcCC-CChhhHHhHHHHHHHHHHhhChhhHH
Q 000050 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLL 1960 (2622)
Q Consensus 1887 l~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-----~l~~llp~L~~~L~d-~~~~vR~~a~~~L~~li~~~~~~~l~ 1960 (2622)
++.+++.+.+.+++.+..|+.++..+...-... ....++|.|.+.+++ +++++|..++.+|..+.... .+...
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~ 93 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTK 93 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhh
Confidence 444566788999999999999999887543321 124578888888864 46789999999999875432 22222
Q ss_pred H-hHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh--h--hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccc
Q 000050 1961 S-FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM--Q--AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA 2035 (2622)
Q Consensus 1961 ~-~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~--~--~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ 2035 (2622)
. .-...+|.+...+.++++++++.|..+++.+...... . .....++.++..+............+..
T Consensus 94 ~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~-------- 165 (434)
T d1q1sc_ 94 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN-------- 165 (434)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHH--------
T ss_pred HhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHH--------
Confidence 2 2256899999999999999999999999988632111 0 1123455555555443321100000000
Q ss_pred cccchhhhhhcCCCchHHHHHHHHHHHHhC-CChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChh--c--H
Q 000050 2036 VLPHILPKLVHLPLSAFNAHALGALAEVAG-PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE--G--V 2110 (2622)
Q Consensus 2036 ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g-~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~--~--l 2110 (2622)
.+.++..+..... .........++|.+...+.+++++++..+.+++..+....+.. . -
T Consensus 166 -----------------~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 228 (434)
T d1q1sc_ 166 -----------------LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 228 (434)
T ss_dssp -----------------HHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred -----------------HHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhh
Confidence 0111222211111 1122345678899999999999999999999998886532211 0 1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccccccc--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccc
Q 000050 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE--APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV 2188 (2622)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~--~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~ 2188 (2622)
..+++.+.+.++++++.++..++.+++.++..... ...+ -..+++.+..++.+++.+++..+..++..++..... .
T Consensus 229 ~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~ 306 (434)
T d1q1sc_ 229 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE-QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-Q 306 (434)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-H
T ss_pred cccchhcccccccchhhhhhchhhhhhhHHhhhhH-HHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccch-h
Confidence 23567788888899999999999999998764321 1111 134566788889999999999999999998753211 0
Q ss_pred hhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhh
Q 000050 2189 QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEF 2268 (2622)
Q Consensus 2189 l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~ 2268 (2622)
. ..+.. ..++|.+++.+.+++.++|..++.+++.++...+.+.....
T Consensus 307 ----~----~~i~~-------------------------~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l 353 (434)
T d1q1sc_ 307 ----I----QQVVN-------------------------HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 353 (434)
T ss_dssp ----H----HHHHH-------------------------TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ----H----HHHhh-------------------------hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0 00000 12578888888899999999999999999987664444333
Q ss_pred h-hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCC--ccCchHHH-----HHHHHHHhCCCCHHHHHHHHHHHH
Q 000050 2269 V-IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA--LKPFLPQL-----QTTFIKCLQDSTRTVRSSAALALG 2338 (2622)
Q Consensus 2269 v-~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~--l~p~l~~L-----~~~llk~L~d~~~~vR~~Aa~aLg 2338 (2622)
+ ..++++|++.+... +++++..++.+|..++...... ..++...+ .+.+-....++|++++..|.+.+-
T Consensus 354 ~~~~~i~~L~~ll~~~-d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~ 430 (434)
T d1q1sc_ 354 VHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430 (434)
T ss_dssp HHTTCHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 34578899988765 7889999999999887643211 01111111 122222223347777777766554
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=8e-08 Score=126.25 Aligned_cols=347 Identities=14% Similarity=0.125 Sum_probs=236.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhHH-HHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHh-
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYV-IQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG- 1455 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~-~~~~~~v-~~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~- 1455 (2622)
++.+.+.+.+. +...+..|+..+..+...-. ......+ ..++|.++..+. +.++.++..|..++..++...+...
T Consensus 78 l~~~~~~~~s~-~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~ 156 (503)
T d1wa5b_ 78 LPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 156 (503)
T ss_dssp HHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34455556555 66666667666555432111 1111122 246889999987 5577899999888888876443331
Q ss_pred ---HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000050 1456 ---VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2622)
Q Consensus 1456 ---v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2622)
-..++|.+...+.+++..++..++.+|+.++...+..-... -..+++.+..++.+.++.++..++++|..++....
T Consensus 157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~ 236 (503)
T d1wa5b_ 157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 236 (503)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCc
Confidence 14578889999999999999999999999997655422111 24578889999999999999999999999986432
Q ss_pred C-hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCC
Q 000050 1532 N-PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2622)
Q Consensus 1532 ~-~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 1610 (2622)
+ +.. .....++|.+...+.+.+++++..++.++..++.. ..
T Consensus 237 ~~~~~------------------------------------~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~--~~ 278 (503)
T d1wa5b_ 237 PQPDW------------------------------------SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQ 278 (503)
T ss_dssp SCCCH------------------------------------HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CH
T ss_pred cchHH------------------------------------HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC--Cc
Confidence 1 110 01122445555556666677777778888777652 21
Q ss_pred Ccccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHH
Q 000050 1611 KDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2622)
Q Consensus 1611 ~~l~~~-l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i 1685 (2622)
...... -..+++.+...+.++++.++..++.+++.++...+.. .-..+++.+...+.+. ....|..++.+++.+
T Consensus 279 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl 357 (503)
T d1wa5b_ 279 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNI 357 (503)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 111111 2357888999999999999999999999998643221 1235677777777655 455788888888887
Q ss_pred HHHhchh--H-H-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc--chhhhH--HhHHHHHHhhcCCCChHHHHHH
Q 000050 1686 LAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYL--QQVLPAILDGLADENESVRDAA 1757 (2622)
Q Consensus 1686 ~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~--~f~p~l--~~ii~~ll~~L~d~~~~VR~~a 1757 (2622)
+.+.... . . ..++|.+++.+.+.+..+|..++.++..++..... ....++ ..+++.+...|...+.++...+
T Consensus 358 ~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~ 437 (503)
T d1wa5b_ 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 437 (503)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred hhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHH
Confidence 6532211 1 1 45788889988889999999999999998865432 222333 2478889999988888888888
Q ss_pred HHHHHHHHH
Q 000050 1758 LGAGHVLVE 1766 (2622)
Q Consensus 1758 l~al~~lv~ 1766 (2622)
+.++..++.
T Consensus 438 L~~l~~ll~ 446 (503)
T d1wa5b_ 438 LDALENILK 446 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=1.4e-07 Score=123.99 Aligned_cols=346 Identities=16% Similarity=0.160 Sum_probs=240.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc-ch-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCc--cc
Q 000050 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SS 1373 (2622)
Q Consensus 1302 ~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~-~~-----~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~--~~ 1373 (2622)
++.+...+..++.+.|..+..++..++..-.. .. ...++.+++.+....+...+..|+++|..++.+... ..
T Consensus 78 l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~ 157 (503)
T d1wa5b_ 78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 157 (503)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46667777888888888887777665432211 11 124566777665555667889999999988764321 12
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000050 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2622)
Q Consensus 1374 l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2622)
+...++++.+...+.+. +...++.++.+++.++.... ....++. .+++.++..+.+.+..++..+..++..++..-
T Consensus 158 ~~~~g~i~~l~~lL~s~-~~~i~~~a~~~L~nia~~~~-~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~ 235 (503)
T d1wa5b_ 158 VVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDST-DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 235 (503)
T ss_dssp HHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHhCCChHHHHHHhcCC-ChhHHHHHHHHHHHHhhhhH-HHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence 22335778888888876 78899999999998885332 1222222 46788899999999999988888888887543
Q ss_pred cH----HhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000050 1452 SA----QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2622)
Q Consensus 1452 ~~----~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2622)
.+ .....++|.+...+.+.++..+..++.++..++...+......+ ..+++.+..++.+.++.++..|+.+++.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl 315 (503)
T d1wa5b_ 236 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 315 (503)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHH
Confidence 22 23568899999999999999999999999999887665433322 46788999999999999999999999998
Q ss_pred hhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1527 GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1527 ~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
+..- +... ..+.. ..+++.+...+.+.++.+|..++.++++++.
T Consensus 316 ~~~~--~~~~---~~~~~------------------------------~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~- 359 (503)
T d1wa5b_ 316 VTGN--DLQT---QVVIN------------------------------AGVLPALRLLLSSPKENIKKEACWTISNITA- 359 (503)
T ss_dssp TTSC--HHHH---HHHHH------------------------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-
T ss_pred HHHH--HHHH---Hhhhc------------------------------cchHHHHHHHhcCCCHHHHHHHHHHHHHHhh-
Confidence 7531 1110 01100 1245666677777788999999999999875
Q ss_pred cCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--C-----chhhHHHHHHHhhhcCChHHHHHH
Q 000050 1607 VTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--N-----FPDLVSWLLDALKSDNSNVERSGA 1678 (2622)
Q Consensus 1607 ~~~~~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~--~-----~~~ll~~Ll~~L~~~~~~~~r~~a 1678 (2622)
+.+....... ..+++.+...+.++++.++..++.+++.++...... . -..+++.+.+.|...+ ......+
T Consensus 360 -~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d-~~~~~~~ 437 (503)
T d1wa5b_ 360 -GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD-NRIIEVT 437 (503)
T ss_dssp -SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC-HHHHHHH
T ss_pred -ccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCC-HHHHHHH
Confidence 2322221222 457888899999899999999999999998754332 1 1346777888886654 3344455
Q ss_pred HHHHHHHHH
Q 000050 1679 AQGLSEVLA 1687 (2622)
Q Consensus 1679 ~~~L~~i~~ 1687 (2622)
..++..++.
T Consensus 438 L~~l~~ll~ 446 (503)
T d1wa5b_ 438 LDALENILK 446 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556655543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=4.3e-07 Score=108.34 Aligned_cols=251 Identities=17% Similarity=0.119 Sum_probs=160.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhh
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2622)
.+.|.+.++++ |+.+|..|+.+++.+. . ...+|.++..+.|+++.||..|..++..+.... ......
T Consensus 21 ~~~L~~~L~d~-~~~vR~~A~~~L~~~~----~------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~--~~~~~~ 87 (276)
T d1oyza_ 21 DDELFRLLDDH-NSLKRISSARVLQLRG----G------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KCEDNV 87 (276)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHC----C------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TTHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhhC----C------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccccch
Confidence 34566777777 7999999988776542 1 356788888899999999999888887663211 112333
Q ss_pred HHHHHh-hccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhH
Q 000050 1460 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2622)
Q Consensus 1460 lp~Ll~-~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~i 1538 (2622)
++.++. .+.+++|.+|..++..|+.+....+. ..+.+++.+...+.|.++.||..++.+++.+... ..
T Consensus 88 ~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~-------~~ 156 (276)
T d1oyza_ 88 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-------AT 156 (276)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchH-------HH
Confidence 444443 35678899999999999888765432 2356777888888899999998888887766532 23
Q ss_pred HHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH
Q 000050 1539 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2622)
Q Consensus 1539 lp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2622)
++.+...+.+.+..++. +...+..... ......+.+...+.+.++.++..+...++.+. .
T Consensus 157 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~-------- 217 (276)
T d1oyza_ 157 IPLLINLLKDPNGDVRNWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D-------- 217 (276)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C--------
T ss_pred HHHHHHhcccccchhhhhHHHHHHhhhc-------cccccchhhhhhhhhhhhhhhhhhccccchhh----h--------
Confidence 45555666666665552 2222211000 11234555666777788888888777776542 1
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHH
Q 000050 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682 (2622)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L 1682 (2622)
+..++.+.+.+.|+ .||..++.+||.+. + +..+|.|...+.++++..+|..++.+|
T Consensus 218 ~~~~~~L~~~l~d~--~vr~~a~~aL~~ig----~---~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 218 KRVLSVLCDELKKN--TVYDDIIEAAGELG----D---KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp GGGHHHHHHHHTSS--SCCHHHHHHHHHHC----C---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCh--HHHHHHHHHHHHcC----C---HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 22456666666653 57888888887653 2 356777777776655555677666654
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=7.1e-07 Score=106.40 Aligned_cols=195 Identities=19% Similarity=0.170 Sum_probs=136.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHH
Q 000050 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2622)
Q Consensus 1302 ~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2622)
.+.|++.|+|+++.||..++.+|+.+ +. +..++.++..+ ++.++.+|..|+.+|+.+....+. ...+.+
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~----~~--~~~~~~l~~~l-~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~ 89 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLR----GG--QDAVRLAIEFC-SDKNYIRRDIGAFILGQIKICKKC----EDNVFN 89 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CC--HHHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCTTT----HHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhh----CC--HhHHHHHHHHH-cCCCHHHHHHHHHHHHHhcccccc----ccchHH
Confidence 45788999999999999999998754 22 34566665554 456788999999998765322111 113344
Q ss_pred HHHH-HHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000050 1382 TLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2622)
Q Consensus 1382 ~L~~-~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2622)
.+.. .+.++ ++.+|..++.+++.++...+ .....+++.+...+.|+++.||..+..+++.+. -...+
T Consensus 90 ~l~~~~l~d~-~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-------~~~~~ 157 (276)
T d1oyza_ 90 ILNNMALNDK-SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN-------DKATI 157 (276)
T ss_dssp HHHHHHHHCS-CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CCH
T ss_pred HHHHHHhcCC-ChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-------hHHHH
Confidence 4444 44555 89999999999988876543 234577888888999999999988877765442 23456
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000050 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2622)
+.+...+.+.+|..+..+...++.+.... +...+.+...+.|.+..+|..+..+++.++
T Consensus 158 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 216 (276)
T d1oyza_ 158 PLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 216 (276)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccccchhhhhHHHHHHhhhccc--------cccchhhhhhhhhhhhhhhhhhccccchhh
Confidence 66777777888888877777666544322 344556677788889999999888887764
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.1e-05 Score=100.14 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh
Q 000050 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2622)
Q Consensus 1887 l~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~ 1962 (2622)
+|.+++.|.++++++|..|+.+|+.++..-.+. .....+|.|.+.++++++++|..++.+|+.+..... +.-...
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~-~~~~~i 82 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST-TNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-HHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHH
Confidence 677888899999999999999999998532221 234568889999999999999999999999863222 111111
Q ss_pred -HHhHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHH
Q 000050 1963 -MDELIPTIRTAL-CDSILEVRESAGLAFSTLFKS 1995 (2622)
Q Consensus 1963 -l~~ll~~l~~~L-~d~d~~VR~~A~~al~~l~~~ 1995 (2622)
-...++.+...+ .+.++++|..|..++..+...
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~ 117 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhh
Confidence 123466666655 456889999999999988654
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=9.9e-05 Score=93.63 Aligned_cols=398 Identities=12% Similarity=0.083 Sum_probs=200.4
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccch--HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-
Q 000050 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE- 1653 (2622)
Q Consensus 1577 i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~- 1653 (2622)
.+|.+.+.+++.+++++..|+.+++++|.. + ++.... -...+|.|.+++.++++++|..|+.+|+.++....+.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~--~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--D-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS--C-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcC--C-HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 478899999999999999999999999853 2 122222 2346899999999999999999999999998432211
Q ss_pred ---CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh--HHHhHhHHHHHhc----------------cCCChhh
Q 000050 1654 ---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNC----------------SHQRASV 1712 (2622)
Q Consensus 1654 ---~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~--~l~~llp~l~~~l----------------~~~~~~v 1712 (2622)
.-...++.++..+....+...|..++..+..+....... .....++.+...+ ...+..+
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 112357788888877666667878888888776543221 1122222222221 2236677
Q ss_pred HHHHHHHHHHhhhhhCcc-hhhhHHhHHHHHHhhcCCCC------hHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccC
Q 000050 1713 RDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADEN------ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785 (2622)
Q Consensus 1713 R~~al~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~------~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~ 1785 (2622)
+..++.++..++...... ..-....+++.+...+.... ......+...+......... .....+..+.....
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 238 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA-EVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHH-HSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHhhhh
Confidence 777777777665432110 00001123344433332110 01111111111110000000 00000011100000
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHH-HhccCCCHHHHHHH
Q 000050 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-MVRSDVSLSVRQAA 1864 (2622)
Q Consensus 1786 d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~-~~~~D~~~~VR~aA 1864 (2622)
+ ..........++......................... ..+ .....++.+. ......+..++..+
T Consensus 239 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~i~~l~~l~~~~~~~~~~~~~ 304 (457)
T d1xm9a1 239 N--AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS---------GWL---YHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp -----------------------------CCCCCSSCCGG---------GGG---GSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred h--hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHH---------HHH---HhhcHHHHHHHHHhcccchHHHHHH
Confidence 0 0000000001110000000000000000000000000 000 0011222221 12234456777888
Q ss_pred HHHHHHHHhhChhhHHHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc--hhhhHHHHHhhhcCC--
Q 000050 1865 LHVWKTIVANTPKTLKEIM------PVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPILSRGLKD-- 1934 (2622)
Q Consensus 1865 ~~~l~~l~~~~p~~l~~~l------~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~--~l~~llp~L~~~L~d-- 1934 (2622)
...+..+............ ...++.++..+.+.++.+|..++.+++.+....... +....+|.+...+.+
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~ 384 (457)
T d1xm9a1 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHT 384 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCC
T ss_pred HHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccc
Confidence 8887777654332111111 234678888999999999999999999987532211 223345555554432
Q ss_pred ----CChhhHHhHHHHHHHHHHhhChhhHHHhH-HhHHHHHHHHhcC-CcHHHHHHHHHHHHHHH
Q 000050 1935 ----PSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCD-SILEVRESAGLAFSTLF 1993 (2622)
Q Consensus 1935 ----~~~~vR~~a~~~L~~li~~~~~~~l~~~l-~~ll~~l~~~L~d-~d~~VR~~A~~al~~l~ 1993 (2622)
.+++++..+|.+|..+..... +...... ...++.+...+.+ .++.++++|+.++..|.
T Consensus 385 ~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 385 GNTSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred cCcCCcHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 345788999999998865332 2222222 3467778887755 46889999998888763
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00025 Score=83.08 Aligned_cols=179 Identities=15% Similarity=0.064 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHhhcHH-hH--HhhHHHHHh-hccCCChhhHHHHHHHHHHHHhhCchhh-hhhhhhhHHHHhhhh
Q 000050 1434 VAVREAAECAARAMMSQLSAQ-GV--KLVLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVL 1508 (2622)
Q Consensus 1434 ~~VR~aa~~al~~i~~~l~~~-~v--~~ilp~Ll~-~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L 1508 (2622)
..+|..|..++..+++..... .+ ..-++.++. .+.+++..+|..|+.+|+.++...|... .-.-...+|.++.++
T Consensus 31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL 110 (264)
T d1xqra1 31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 110 (264)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHh
Confidence 356667777777766543221 11 123455554 6778889999999999999998765432 222357889999988
Q ss_pred c-CCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcC
Q 000050 1509 T-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2622)
Q Consensus 1509 ~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d 1587 (2622)
. ++++.||..|+.+|..++...++. . ..+. ....++.+.+.+.+
T Consensus 111 ~~~~~~~v~~~a~~aL~~l~~~~~~~--~---------------------~~~~------------~~~gi~~L~~lL~~ 155 (264)
T d1xqra1 111 DRDACDTVRVKALFAISCLVREQEAG--L---------------------LQFL------------RLDGFSVLMRAMQQ 155 (264)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHH--H---------------------HHHH------------HTTHHHHHHHHHHS
T ss_pred hcCCCHHHHHHHHHHHHHHhccchhh--H---------------------HHHH------------HhhhhhHHHHHHhc
Confidence 5 678999999999999998643210 0 0000 01245666677777
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000050 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
.+..++..++.++.+++.. .+.....+. ...+|.+..++.++++.+|..+..+|+.++..
T Consensus 156 ~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 156 QVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHhc--cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 8889999999999998864 222222222 24789999999999999999999999999864
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=0.00021 Score=83.75 Aligned_cols=178 Identities=18% Similarity=0.138 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHHhhhCc-cchh-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHH
Q 000050 1352 YGERRGAAFGLAGVVKGFGI-SSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVA 1428 (2622)
Q Consensus 1352 ~~~r~~Aa~~L~~l~~~lg~-~~l~-~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v-~~ilp~ll~~ 1428 (2622)
...|..|...|..++..... ..+. ...+.+.+..++.+. ++..|..|+.+++.++..-+..-...+ ...+|.++..
T Consensus 31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~-~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l 109 (264)
T d1xqra1 31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109 (264)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 35566666666666643211 1111 112333344455655 799999999999999975442111111 3678999998
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhcHHh----HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHH
Q 000050 1429 FS-DQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2622)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp 1502 (2622)
+. +.++.+|..+..++..++...++.. ....++.+++.+.+.+-.++..++.+|+.++...+....... .+.+|
T Consensus 110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~ 189 (264)
T d1xqra1 110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189 (264)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence 85 7789999999999999887654432 145688889999999999999999999999987765433332 35789
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhc
Q 000050 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
.++.+++++++.+|..|+.+|+.++...
T Consensus 190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 190 QLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998643
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.82 E-value=1.5e-06 Score=87.26 Aligned_cols=107 Identities=20% Similarity=0.327 Sum_probs=81.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhh
Q 000050 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2622)
Q Consensus 1429 l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L 1508 (2622)
|+|+++.||..|..+++.+ ++ ..++.+++.+.+++|.+|..++.+|+.+.. +..+|.+.+++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l 62 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GD----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLL 62 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----CH----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhh
Confidence 5788889998887777644 22 346778889999999999999999886532 45678888899
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHH
Q 000050 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDIL 1560 (2622)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L 1560 (2622)
+|+++.||.+|+++|+.++. ...+|.|...+.|++..+| .|+.+|
T Consensus 63 ~d~~~~VR~~a~~aL~~i~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 63 EDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ccchhHHHHHHHHHHHHhCc-------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999998863 2456777777778877776 344443
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.31 E-value=0.00013 Score=72.74 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCC
Q 000050 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2622)
Q Consensus 1392 ~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~ 1471 (2622)
|+.+|..|+.+++.+ |. ..++.++..+.|+++.||..+..+++.+ .....+|.+.+.|.+++
T Consensus 5 ~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~~-------~~~~~~~~L~~~l~d~~ 66 (111)
T d1te4a_ 5 NKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGNF-------QDERAVEPLIKLLEDDS 66 (111)
T ss_dssp CCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGGG-------CSHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHhc-------chhhhHHHHHhhhccch
Confidence 677888777766542 22 2356677899999999999998887644 23456788889999999
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHH
Q 000050 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2622)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2622)
|.+|..++.+|+.+.. +..+|.|..+++|+++.||..|..+|.
T Consensus 67 ~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 67 GFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp THHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999998742 456788888999999999999999875
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.89 E-value=0.00015 Score=81.50 Aligned_cols=180 Identities=21% Similarity=0.207 Sum_probs=108.2
Q ss_pred hccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhh
Q 000050 1466 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2622)
Q Consensus 1466 ~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~ 1545 (2622)
.|.++.|.+|..|.. .++ +..|..+++|+++.||.+|.+.|+ . +.+...
T Consensus 50 ~l~~p~~e~Ra~Aa~-------~a~----------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~-------~~L~~L 98 (233)
T d1lrva_ 50 YLADPFWERRAIAVR-------YSP----------VEALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSAL 98 (233)
T ss_dssp GTTCSSHHHHHHHHT-------TSC----------GGGGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGGT
T ss_pred HhcCCcHHHHHHHHh-------cCC----------HHHHHHHhcCCCHHHHHHHHHHcC-------H-------HHHHHH
Confidence 466777877754431 222 234566889999999999876542 1 335556
Q ss_pred cCCCChhHHHHH-HHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHH
Q 000050 1546 LTDPNDHTKYSL-DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV 1624 (2622)
Q Consensus 1546 l~d~~~~~r~al-~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L 1624 (2622)
+.|++..+|.++ ..+ . .+.+...+.|.++.+|..+...+ .. +.+
T Consensus 99 ~~D~d~~VR~~aa~~l---------~-------~~~L~~Ll~D~d~~VR~~aa~~~-------~~------------~~L 143 (233)
T d1lrva_ 99 MFDEDREVRITVADRL---------P-------LEQLEQMAADRDYLVRAYVVQRI-------PP------------GRL 143 (233)
T ss_dssp TTCSCHHHHHHHHHHS---------C-------TGGGGGGTTCSSHHHHHHHHHHS-------CG------------GGG
T ss_pred hcCCChhHHHHHHhcc---------C-------HHHHHHHhcCCCHHHHHHHHhcc-------ch------------hHH
Confidence 778888888432 221 1 12344567888899998876421 10 122
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHh
Q 000050 1625 KKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN 1704 (2622)
Q Consensus 1625 ~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~ 1704 (2622)
..++.|+++.||..++.. .+.+ .+.. +.++....+|..++..+ |. +.+...
T Consensus 144 ~~L~~D~d~~VR~~aA~~-------~~~~-------~L~~-l~~D~d~~VR~~aa~~L-------~~-------~~L~~l 194 (233)
T d1lrva_ 144 FRFMRDEDRQVRKLVAKR-------LPEE-------SLGL-MTQDPEPEVRRIVASRL-------RG-------DDLLEL 194 (233)
T ss_dssp GGTTTCSCHHHHHHHHHH-------SCGG-------GGGG-STTCSSHHHHHHHHHHC-------CG-------GGGGGG
T ss_pred HHHhcCCCHHHHHHHHHh-------cCHH-------HHHH-HccCCCHHHHHHHHHhc-------Cc-------HHHHHH
Confidence 345678889999877653 2221 2222 23445566777666443 32 234556
Q ss_pred ccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHH
Q 000050 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2622)
Q Consensus 1705 l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al 1758 (2622)
++++++.||..+... +-+.++..|.|+++.||..+.
T Consensus 195 ~~D~d~~VR~aaae~------------------~~~~ll~~L~D~d~~VR~aA~ 230 (233)
T d1lrva_ 195 LHDPDWTVRLAAVEH------------------ASLEALRELDEPDPEVRLAIA 230 (233)
T ss_dssp GGCSSHHHHHHHHHH------------------SCHHHHHHCCCCCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHh------------------ccHHHHHHhCCCCHHHHHHHH
Confidence 678889998766421 123456678888888888765
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.68 E-value=0.00021 Score=80.36 Aligned_cols=160 Identities=20% Similarity=0.159 Sum_probs=106.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHH
Q 000050 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462 (2622)
Q Consensus 1383 L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~ 1462 (2622)
|..+++|. ++.+|.++.. .+|. +.+..++.|++..||.++...+ +. +.
T Consensus 71 L~~Ll~D~-d~~VR~~AA~-------~Lp~----------~~L~~L~~D~d~~VR~~aa~~l-------~~-------~~ 118 (233)
T d1lrva_ 71 LTPLIRDS-DEVVRRAVAY-------RLPR----------EQLSALMFDEDREVRITVADRL-------PL-------EQ 118 (233)
T ss_dssp GGGGTTCS-SHHHHHHHHT-------TSCS----------GGGGGTTTCSCHHHHHHHHHHS-------CT-------GG
T ss_pred HHHHhcCC-CHHHHHHHHH-------HcCH----------HHHHHHhcCCChhHHHHHHhcc-------CH-------HH
Confidence 44566777 8999988864 2342 2345567899999998775432 22 23
Q ss_pred HHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHH
Q 000050 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2622)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~L 1542 (2622)
+...+.+++|.+|..+...+ + .+.+..+++|+++.||.++...++ .+.+
T Consensus 119 L~~Ll~D~d~~VR~~aa~~~-------~----------~~~L~~L~~D~d~~VR~~aA~~~~--------------~~~L 167 (233)
T d1lrva_ 119 LEQMAADRDYLVRAYVVQRI-------P----------PGRLFRFMRDEDRQVRKLVAKRLP--------------EESL 167 (233)
T ss_dssp GGGGTTCSSHHHHHHHHHHS-------C----------GGGGGGTTTCSCHHHHHHHHHHSC--------------GGGG
T ss_pred HHHHhcCCCHHHHHHHHhcc-------c----------hhHHHHHhcCCCHHHHHHHHHhcC--------------HHHH
Confidence 44557789999998776431 1 123456789999999998775321 1446
Q ss_pred HhhcCCCChhHHH-HHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhH
Q 000050 1543 LMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2622)
Q Consensus 1543 l~~l~d~~~~~r~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll 1621 (2622)
...+.|++..+|. +...+. .|.|...++|.+|.||..+.+.+ -
T Consensus 168 ~~l~~D~d~~VR~~aa~~L~----------------~~~L~~l~~D~d~~VR~aaae~~--------------------~ 211 (233)
T d1lrva_ 168 GLMTQDPEPEVRRIVASRLR----------------GDDLLELLHDPDWTVRLAAVEHA--------------------S 211 (233)
T ss_dssp GGSTTCSSHHHHHHHHHHCC----------------GGGGGGGGGCSSHHHHHHHHHHS--------------------C
T ss_pred HHHccCCCHHHHHHHHHhcC----------------cHHHHHHHhCCCHHHHHHHHHhc--------------------c
Confidence 6777899888883 333321 13456678899999998876421 1
Q ss_pred HHHHHHhcCCCHHHHHHHHH
Q 000050 1622 PEVKKVLVDPIPEVRSVAAR 1641 (2622)
Q Consensus 1622 ~~L~~~L~d~~~~vR~~a~~ 1641 (2622)
+.+...|.|+++.||..+..
T Consensus 212 ~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 212 LEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHHHCCCCCHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 23456678999999998864
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=96.22 E-value=0.076 Score=62.80 Aligned_cols=201 Identities=14% Similarity=0.130 Sum_probs=111.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhhc-
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD----QVVAVREAAECAARAMMSQLS- 1452 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D----~~~~VR~aa~~al~~i~~~l~- 1452 (2622)
.-+.++.+.+.+++-. .-+ |..++..++.. .+.-..++..+ +..+.+ .++.+|..++-+++.++...-
T Consensus 88 ~a~~~i~~~I~~~~ls-~~e-a~~~l~~l~~~-~~Pt~~~l~~~----~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~ 160 (336)
T d1lsha1 88 EALLFLKRTLASEQLT-SAE-ATQIVASTLSN-QQATRESLSYA----RELLNTSFIRNRPILRKTAVLGYGSLVFRYCA 160 (336)
T ss_dssp HHHHHHHHHHHTTCSC-HHH-HHHHHHHHHHT-CCCCHHHHHHH----HHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCC-HHH-HHHHHHHHhcc-CCCCHHHHHHH----HHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence 3455677777665322 222 33344445432 22223333333 334443 467899999888888877432
Q ss_pred ------HHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcC-------CCHHHHHHH
Q 000050 1453 ------AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-------THPKVQSAG 1519 (2622)
Q Consensus 1453 ------~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D-------~~~~VR~aA 1519 (2622)
...++.+...+.+..+.++-..+..++.+||++.. |..++.+..++.+ ....||.+|
T Consensus 161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aA 230 (336)
T d1lsha1 161 NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEA 230 (336)
T ss_dssp TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHH
Confidence 11233444444455556666667778888888752 4555666666643 357899999
Q ss_pred HHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhh-cCCCHHHHHHHH
Q 000050 1520 QTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL-RERSAETKKKAA 1597 (2622)
Q Consensus 1520 ~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l-~d~~~~vr~~a~ 1597 (2622)
.+||..+....+......+++.+.+. +.+..+| .|+..+..+ .|... ++..+...+ .+++..|+....
T Consensus 231 i~Alr~~~~~~p~~v~~~l~~i~~n~--~e~~EvRiaA~~~lm~t-------~P~~~-~l~~i~~~l~~E~~~QV~sfv~ 300 (336)
T d1lsha1 231 IMALRNIAKRDPRKVQEIVLPIFLNV--AIKSELRIRSCIVFFES-------KPSVA-LVSMVAVRLRREPNLQVASFVY 300 (336)
T ss_dssp HHTTTTGGGTCHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHT-------CCCHH-HHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHhhhcCcHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhc-------CCCHH-HHHHHHHHHHhCcHHHHHHHHH
Confidence 99999987653211223344444432 2234566 456655432 12222 222333333 566777877777
Q ss_pred HHHHHhhh
Q 000050 1598 QIVGNMCS 1605 (2622)
Q Consensus 1598 ~~l~~l~~ 1605 (2622)
..+.+++.
T Consensus 301 S~l~~la~ 308 (336)
T d1lsha1 301 SQMRSLSR 308 (336)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 77777665
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=94.07 E-value=2 Score=49.94 Aligned_cols=142 Identities=17% Similarity=0.153 Sum_probs=80.8
Q ss_pred CchhhHhHHHHHHHHHhh-CCc-cccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHH
Q 000050 2442 SWAARHGSVLVFATFLRH-NPS-AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILA 2519 (2622)
Q Consensus 2442 ~~~~r~~~~~~L~~~l~~-~~~-~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~ 2519 (2622)
+...+..+.++++.++.. +.. ..+...+...+.+.+.+.....+.+-+..++.|+|..=. | ...+.+.
T Consensus 140 ~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------p----~~i~~l~ 209 (336)
T d1lsha1 140 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ------P----NSIKKIQ 209 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC------G----GGHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC------H----hHHHHHH
Confidence 334455667777766542 111 112234555667777777777777777778899997511 1 1123333
Q ss_pred HHHhhc----CCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHHhcccccchhHH
Q 000050 2520 SVVSAL----HDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQ 2595 (2622)
Q Consensus 2520 ~l~~~l----~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~~~~~~~~~ 2595 (2622)
+++.+- .+.+..+|.+|+++++.++.+.|..+++.+ + ++|.. +..+..||.||. ..+++-.......+
T Consensus 210 ~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~l---~-~i~~n-~~e~~EvRiaA~---~~lm~t~P~~~~l~ 281 (336)
T d1lsha1 210 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIV---L-PIFLN-VAIKSELRIRSC---IVFFESKPSVALVS 281 (336)
T ss_dssp TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHH---H-HHHHC-TTSCHHHHHHHH---HHHHHTCCCHHHHH
T ss_pred HHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHHH---H-HHHcC-CCCChHHHHHHH---HHHHhcCCCHHHHH
Confidence 333321 234689999999999999998877665422 2 34433 344566888854 44444422233444
Q ss_pred HHHHHh
Q 000050 2596 GAQKFI 2601 (2622)
Q Consensus 2596 ~~~~~l 2601 (2622)
.+.+++
T Consensus 282 ~i~~~l 287 (336)
T d1lsha1 282 MVAVRL 287 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: BC3264-like domain: Hypothetical protein EF3068 species: Enterococcus faecalis [TaxId: 1351]
Probab=81.46 E-value=2.6 Score=45.48 Aligned_cols=147 Identities=8% Similarity=0.033 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChh
Q 000050 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469 (2622)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~ 2469 (2622)
+.+...+..+.+++.-+.|-.+..+++.......++. .+++..++. ..+.|...-..+..+...+...+.
T Consensus 49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~~~-l~~~~~~~~--~~~~Wd~vD~~~~~i~~~~~~~~~------- 118 (213)
T d2b6ca1 49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE-VVAFKAYVP--QKAWWDSVDAWRKFFGSWVALHLT------- 118 (213)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH-HHHGGGGTT--TTCSHHHHHHHHHHHHHHHHHSGG-------
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCHHH-HHHHHHHHc--cCccHHHHHHHHHHHHHHHHHhhh-------
Confidence 3445555566667777788888888888876655422 233443332 234565433222222222222222
Q ss_pred HHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCch
Q 000050 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 2549 (2622)
Q Consensus 2470 ~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~ 2549 (2622)
++.+.+.+...|++..+|..|+.+.- ..-.. .+...++..+...+.|+..=|+.+...+|+.+++..|+
T Consensus 119 --~~~~~l~~w~~s~~~w~rR~aiv~~l---~~~~~------~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~p~ 187 (213)
T d2b6ca1 119 --ELPTIFALFYGAENFWNRRVALNLQL---MLKEK------TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 187 (213)
T ss_dssp --GHHHHHHHHTTCSSHHHHHHHHHTTT---TCGGG------CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHHH---HHHHc------ccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHCHH
Confidence 23456667788999999998765432 11111 12344556666778899999999999999999999999
Q ss_pred hhhhhHhh
Q 000050 2550 AIMVHVAL 2557 (2622)
Q Consensus 2550 ~v~~~l~~ 2557 (2622)
.|.+|+..
T Consensus 188 ~v~~fl~~ 195 (213)
T d2b6ca1 188 WVEELMKE 195 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988753
|