Citrus Sinensis ID: 000064
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2464 | 2.2.26 [Sep-21-2011] | |||||||
| Q8IDX6 | 3130 | Reticulocyte-binding prot | yes | no | 0.054 | 0.043 | 0.3 | 9e-05 | |
| P34554 | 411 | Uncharacterized protein T | yes | no | 0.044 | 0.267 | 0.291 | 0.0004 |
| >sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=3 SV=1 | Back alignment and function desciption |
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Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 35/170 (20%)
Query: 574 ELERVQKMQE---QERQRIIEEQERAL---ELARREEEERLR---VAREQEEQRRRLEEE 624
E ER+QK +E QE++R+ E++ L E +R+E+ERL+ + QE++R + EEE
Sbjct: 2743 EQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEE 2802
Query: 625 TR----EAVWRAEQEQL---EATRKAEEQRIAREE-----ERQRIIMEEERRKHAAKQKL 672
+ E + R +QEQL E ++ E++R+ +EE E++R+ EEE ++
Sbjct: 2803 LKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQE----- 2857
Query: 673 LELEERIAKRQAEAAKSDSN-----SSDIADEKSSGLAKERD-LPKMADV 716
+ER+ +++ E A+ + + SD+ L KE+D + K D+
Sbjct: 2858 ---QERLERKKIELAEREQHIKSKLESDMVKIIKDELTKEKDEIIKNKDI 2904
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Involved in reticulocyte adhesion. Plasmodium falciparum (isolate 3D7) (taxid: 36329) |
| >sp|P34554|YNP1_CAEEL Uncharacterized protein T05G5.1 OS=Caenorhabditis elegans GN=T05G5.1 PE=4 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2464 | ||||||
| 147852611 | 2530 | hypothetical protein VITISV_030961 [Viti | 0.982 | 0.956 | 0.608 | 0.0 | |
| 359480807 | 2394 | PREDICTED: uncharacterized protein LOC10 | 0.950 | 0.978 | 0.614 | 0.0 | |
| 255565158 | 2452 | hypothetical protein RCOM_1407450 [Ricin | 0.967 | 0.972 | 0.621 | 0.0 | |
| 449448508 | 2442 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.981 | 0.560 | 0.0 | |
| 296082428 | 2129 | unnamed protein product [Vitis vinifera] | 0.854 | 0.989 | 0.536 | 0.0 | |
| 449485561 | 2391 | PREDICTED: uncharacterized protein LOC10 | 0.952 | 0.982 | 0.555 | 0.0 | |
| 356565608 | 2360 | PREDICTED: uncharacterized protein LOC10 | 0.933 | 0.974 | 0.540 | 0.0 | |
| 356514250 | 2345 | PREDICTED: uncharacterized protein LOC10 | 0.931 | 0.978 | 0.540 | 0.0 | |
| 358349430 | 2364 | hypothetical protein MTR_142s1012 [Medic | 0.935 | 0.974 | 0.528 | 0.0 | |
| 224096768 | 1828 | predicted protein [Populus trichocarpa] | 0.719 | 0.970 | 0.564 | 0.0 |
| >gi|147852611|emb|CAN81687.1| hypothetical protein VITISV_030961 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2760 bits (7155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1565/2571 (60%), Positives = 1889/2571 (73%), Gaps = 151/2571 (5%)
Query: 1 MANPGVGNKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGG--GGGGMLVL 58
MAN GVG+KFVSVNLNKSYGQ H H YGSNR R TG GGGGM+VL
Sbjct: 1 MANHGVGSKFVSVNLNKSYGQPPHP---------PHQSSYGSNRTR-TGSHGGGGGMVVL 50
Query: 59 SRPRSSQKAAVPKLSVPPPLNLPSLRKEHERFDSSGSNGGPAGGGVSGAGQRPGSSGTGW 118
SR R+ QK PKLSVPPPLNLPSLRKEHERFDSSG G +GG SG G RP SSG GW
Sbjct: 51 SRSRNMQKIG-PKLSVPPPLNLPSLRKEHERFDSSGLGSGQSGGSGSGNGSRPTSSGMGW 109
Query: 119 TKPGTAV----------------GSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRS 162
TKPGT GS+ + VDQG HSVDG+++G+ GVY+PPS RS
Sbjct: 110 TKPGTVALQEKDGGGDHHLFGRSGSEAQAVXSVDQGLHSVDGVTRGS---GVYMPPSARS 166
Query: 163 GTVGPALSS----FAPAEKASVLRGEDFPSLQAALPAASGSEKKQKDGFSQKQKQGMSQE 218
GT+ P +S+ F EKA VLRGEDFPSLQAALP SG +K KDG +QKQK +S+E
Sbjct: 167 GTLVPPISAASRAFPSVEKAVVLRGEDFPSLQAALPTTSGPAQKPKDGQNQKQKHVLSEE 226
Query: 219 LGNNEQKDGCRFNAVNDGMSPRLQSGQDVVGSRLRENGGINHDTGSARRSEQVRKQEEYF 278
L +NEQ++ + + D M P++Q G+RL N H GS+ ++E RKQ++YF
Sbjct: 227 L-SNEQRESDHLSLLVD-MRPQVQPSHHNDGNRLNANRE-GHGLGSSCKTELTRKQDDYF 283
Query: 279 PGPLPLVRLKPRSDWADDERDTGHGITDRDRDHGFSKSEAYWEGDFDMPRPSVLPHKPAH 338
PGPLPLVRL PRSDWADDERDTGHG T+R RDHGFSK+EAYW+ DFDMPR VLPHKPAH
Sbjct: 284 PGPLPLVRLNPRSDWADDERDTGHGFTERARDHGFSKTEAYWDRDFDMPRSGVLPHKPAH 343
Query: 339 NVFERWGQRDSETGKVSSSEVARVDPFGRDIRAPSREGR---------EGNMWRASSSLQ 389
NVF+RWGQRD+E GKV SSEV ++DP+GRD+R PSR+G EGN WR SS L
Sbjct: 344 NVFDRWGQRDNEAGKVYSSEVPKLDPYGRDVRTPSRDGYVRTPSRDGYEGNSWRTSSPLP 403
Query: 390 KDGFGALDIGDNRNGICERPSSLNREANKET-KFMSSPFRDTVQDD-----------SGR 437
K GF + ++G++R G RPSS+NRE +KE K+ SP + +DD GR
Sbjct: 404 KGGFSSQEVGNDRGGFGVRPSSMNRETSKENNKYAPSPLLENSRDDFSVVSANRDSALGR 463
Query: 438 RDIDYGPGGRQPWNNSVHSFNSQRAERNPWEQYGSEQYNRFRGDAFQRSSASKSSFSSGG 497
RD+ YG GG+Q WN+++ SF+S+ AERN +++G+E NR+RGDAFQ SS SKSSFS GG
Sbjct: 464 RDMGYGQGGKQHWNHNMESFSSRGAERNMRDRHGNEHNNRYRGDAFQNSSISKSSFSLGG 523
Query: 498 RGFPHNDPMHNFSRDKRPLLKREEPYQDDPFMKDFGSSSFDGRDPFSAGLVGVVKKKKDV 557
+ NDP+ NF R+KR +K E+PY +DPF+KD+GS+ FDGRDPFS GLVG+VK+KK+V
Sbjct: 524 KSLHMNDPILNFGREKRSFVKNEKPYLEDPFLKDYGSTGFDGRDPFSGGLVGLVKRKKEV 583
Query: 558 LKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQ 617
K TDFHDPVRESFEAELERVQKMQE ERQ+IIEEQERA+ELARREEEER R+AREQEEQ
Sbjct: 584 AKPTDFHDPVRESFEAELERVQKMQEMERQKIIEEQERAMELARREEEERARLAREQEEQ 643
Query: 618 RRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEE 677
+R+LEEE R+A WRAEQ+++EA R+AEEQ+IAREEE++RI++EEERRK AAKQKL+ELE
Sbjct: 644 QRKLEEEARQAAWRAEQDRVEAVRRAEEQKIAREEEKRRILVEEERRKQAAKQKLMELEA 703
Query: 678 RIAKRQAEAAKSDSNSSDIADEKS-SGLAKERDLPKMADVGDWEDGERMVERITTSASSD 736
+IA+RQAE +K D+ S+ IADEK G+ + AD+GDW+DGER+VERITTSASSD
Sbjct: 704 KIARRQAEMSKEDNFSAAIADEKMLVGMKGTK-----ADLGDWDDGERLVERITTSASSD 758
Query: 737 SSGLHRSFDMSSRNQFARDNSSGFLDRGKPFNSWRRDAFESGNSSTFITQDAENGHYSPR 796
SS L RS+++ SR +R+ SS LDRGK NSWRRDA E+GNSS F+ QD ENGH SPR
Sbjct: 759 SSSLGRSYNVGSRPISSREISSPILDRGKSINSWRRDAVENGNSSAFLPQDQENGHQSPR 818
Query: 797 RDSAFGGRAVPRKEFYGGPGIMSSRNYYKAGILEPHMDEFTVSRGQRWNMSGDGDHYGRN 856
D++ GGR RKEF+GG G MSSR+YYK G+ + +D++T ++G RWN+SGDGDHYGR+
Sbjct: 819 PDASAGGRGYSRKEFFGGGGFMSSRSYYKGGMTDHQVDDYTHAKGHRWNLSGDGDHYGRD 878
Query: 857 IEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYPNPETDVISSFGRSRYSMRHPR 916
+E++S+FH+NI E++GDVGWGQG RG++HPPY +R+Y N ++D + SFGRSRYSMR PR
Sbjct: 879 VEIDSEFHDNIGEKFGDVGWGQGPSRGHLHPPYLERMYQNSDSDELYSFGRSRYSMRQPR 938
Query: 917 VLPPPTLTSMQKPSYRRENECPSPSTFQENEVEYNRLLRSESISLAGLDRS-EQHNLAQP 975
VLPPP+L SM K SYR ENE P PSTF ++E++Y+ R+E G D S Q Q
Sbjct: 939 VLPPPSLASMHKMSYRGENERPGPSTFPDSEMQYD--ARNEPTMQTGYDNSAHQEKHEQS 996
Query: 976 EIIDVQPESTENEEQNLERSTTSRCDSQSSLSVSSAPDSPVHLSHDDLDVSGDSPALSAA 1035
EIID+Q E E EEQ LER+ T RCDSQSSLSVSS P SP HLSHDDLD SGDS L +
Sbjct: 997 EIIDIQREKAETEEQKLERNATPRCDSQSSLSVSSPPTSPTHLSHDDLDESGDSSMLPST 1056
Query: 1036 EEDKDAVLSGPVNDTVVLPMDSGNGNMIAPASSISAGDDEEWAVENDERLHEQEEYDEDE 1095
E K+ LSG N+ VVL G NM+ +SSIS DDEEW+++N+E+L EQEEYDEDE
Sbjct: 1057 TEGKEIPLSG--NEQVVLSTKGGKENMMTASSSISTADDEEWSIDNNEQLQEQEEYDEDE 1114
Query: 1096 DGYQEEDVPEGDDENIELTQEFEGIHLEEKGSPHMMSNLVLGFNEGVEVPMPNDDFERSP 1155
+GY EED DE+I LT+E E +HL EKGSPHM+ NLVLG +EGVEV MP+D+FERS
Sbjct: 1115 EGYHEEDEVHEADEHINLTKELEDMHLGEKGSPHMVDNLVLGLDEGVEVRMPSDEFERSS 1174
Query: 1156 QNEDTT-LAPQISAGTVVEDQGSLDGLC-GNLASV-DIPSQLSIGSSSGILQETDKAIQD 1212
NE++T + P++S GTV E+QG+ G+ G + D Q+SI S ++ KAIQD
Sbjct: 1175 GNEESTFMLPKVSLGTV-EEQGAFGGIHEGQTPQLTDGSPQVSIDXSGRRGEDAGKAIQD 1233
Query: 1213 LVVQQDN-TQLSAASELMDHLNANSCSVVSTQHPIPTSVGMALQSSSDQSVMSTVTVGLS 1271
LV+Q N S AS++++ ++A+ S ++ HP P+SV +A+ SSS ++V STV+
Sbjct: 1234 LVIQPVNGPHTSVASDVLNSVDASISSSQTSLHPAPSSVNVAMHSSSGKAVTSTVSAAPG 1293
Query: 1272 QAETPVKLQFGLFSGPSLIPSPFPAIQIGSIQMPL-LHPQVGTSLAHMHPSQPPVFQFGQ 1330
QAE PVKLQFGLFSGPSLIPSP PAIQIGSIQMPL LHPQVG SL H+HPSQPP+FQFGQ
Sbjct: 1294 QAELPVKLQFGLFSGPSLIPSPVPAIQIGSIQMPLHLHPQVGPSLTHIHPSQPPLFQFGQ 1353
Query: 1331 LRYTSPVSQGVLPLAPHSVPYVQPNVPANFSLNQNAGVSQPIQHVQQTSTHKSDTFSLSG 1390
LRYTSP+SQG+LPLAP S+ +VQPNVPA+F+ NQN G S P+Q +Q T K D SL
Sbjct: 1354 LRYTSPISQGILPLAPQSMSFVQPNVPAHFTANQNPGGSIPVQAIQNT---KIDIVSLPM 1410
Query: 1391 DNHLGLVRRHLD--QGNALNEASSLPAIGSAQTTSMVQQDGAEISLIDDNKTRPDSVFEA 1448
D+ LGLV R+LD Q NA E SLP SA M A++S I +N +R + +
Sbjct: 1411 DSQLGLVPRNLDLPQDNASKEVKSLPLRVSADGNVMTSHAQADMSHIVENSSRYELGLQV 1470
Query: 1449 DEQGHHNLDMRNFKSL-NPKKSSGRLHTEASSFQSNSREKSLTGSKAQGLTSGSRGKRYV 1507
+QGHH +N+ SL N ++S G ++S QS SRE+ L+GSKAQG S +G++Y+
Sbjct: 1471 TDQGHHETVKKNYISLSNARESEGLPQNGSTSSQSFSRERDLSGSKAQGPISAGKGRKYM 1530
Query: 1508 VTARNNSFPKSSFVAAEPSRSDAVGFPRRPRR-QRTEFRVRENADKRQSTAMAPANHLGV 1566
T +N S P+SSF E SR+D+ GF R+PRR QRTEFRVREN D+RQS+ M +NH G+
Sbjct: 1531 FTVKN-SGPRSSFPVPESSRADSGGFQRKPRRIQRTEFRVRENPDRRQSSGMVSSNHSGL 1589
Query: 1567 DDNSNSSRRVTGISTRSGYRR-VVLSKSSKQINDSESSNSATMNLQERDPGSKVGKGVGN 1625
DD SN S R GIS+R+G ++ VL+K K +SE S + +E DP + KG+G
Sbjct: 1590 DDKSNISGRGAGISSRTGSKKGAVLNKPLKHTFESE--GSGPIISREVDPVGRAEKGIGK 1647
Query: 1626 ESLMKGQNISHTDEGNLKRT-IRSEDDVDASLQSGVVRVFEQPGIEAPSDEDDFIEVRSK 1684
E+L K Q+ S EGNLKR+ I + +DVDA LQSG+VRVFEQPGIEAPSDEDDFIEVRSK
Sbjct: 1648 EALTKNQSSSRAGEGNLKRSNICAGEDVDAPLQSGIVRVFEQPGIEAPSDEDDFIEVRSK 1707
Query: 1685 RQMLNDRREQKEKEIKAKSRVTKL--------------PKKHHSTSQNAIVLTSSNKISA 1730
RQMLNDRREQ+EKEIKAKSRV KL P+K STSQ+AIV T+SNKISA
Sbjct: 1708 RQMLNDRREQREKEIKAKSRVAKLILPNYVVLTILCQMPRKPRSTSQSAIVSTNSNKISA 1767
Query: 1731 STCGQGANNVRSDFAANEGRNLTNIEVSTGFNANKVSQPLAPIGTPAAKSDPQADLRSQT 1790
G+ NN+ SDFA EGR EVSTGF++N +SQPLAPIGTP +D QAD+RSQ
Sbjct: 1768 PLGGEATNNIHSDFAVAEGR--AKNEVSTGFSSNIISQPLAPIGTPTVNTDSQADIRSQP 1825
Query: 1791 NKSLKNSSIPVVSGCGKNLASGFIFDSENKIMDNVQTSMGSWGNSRLNQQ------TQLD 1844
KSL+ SS+PV+S GKN+ IFD++N ++DNV TS+GSWGN RLN+Q TQLD
Sbjct: 1826 IKSLQTSSLPVISSGGKNIGPSLIFDTKNTVLDNVPTSLGSWGNGRLNKQVMALTQTQLD 1885
Query: 1845 EAMNPGKFDSCV-SVKDHTSSVSEPNMPSSSILTKDKSFSSSASPINSLLAGEKIQFGAV 1903
EAM P +FD+ V S+ DHT+SVSEP+MPSSSILTKDK+FSS+ SPINSLLAGEKIQFGAV
Sbjct: 1886 EAMKPPRFDTHVTSIGDHTTSVSEPSMPSSSILTKDKTFSSAVSPINSLLAGEKIQFGAV 1945
Query: 1904 TSPTVLPPSTRAVSHGIGPPGPCRSDIQISHNLSTPENDCTIFFDKEKNTSESCVNLEDC 1963
TSPT+LPPS+ A+SHGIG PG CRSDIQISH+LS+ ENDC +FF KEK+T ESC++LEDC
Sbjct: 1946 TSPTILPPSSHAISHGIGAPGSCRSDIQISHDLSSAENDCGLFFKKEKHTDESCIHLEDC 2005
Query: 1964 EAEAEAAASAIAVAAISSDEVVGNGLGTGSVSASETKNFGGADTDGI------------- 2010
EAEAEAAASAIAVAAIS+DE+VGNGLG SVS +++K FG D DG
Sbjct: 2006 EAEAEAAASAIAVAAISNDEIVGNGLGACSVSVTDSKGFGVPDLDGTAGGGKHFLHPKLV 2065
Query: 2011 -----------------RAAGGDADQQSASQSRAEESLSVALPADLSVETPPISLWPPLP 2053
AG DQQ +S SRAEESLSVALPADLSV+TPPISLWP LP
Sbjct: 2066 NLAFSIFKMFNVLTMCYSVAGVAGDQQLSSXSRAEESLSVALPADLSVDTPPISLWPALP 2125
Query: 2054 SPP-SSNQMISHFPGGLPSHFPLYEMNPLLGGPIFTFGPHEESVPAQSQTQKTASTPGSS 2112
SP +S+QM+SHFPGG PS FP++EMNP++G PIF FGPH+ESV QSQTQK++++ GS
Sbjct: 2126 SPQNTSSQMLSHFPGGQPSPFPVFEMNPMMGSPIFAFGPHDESVGTQSQTQKSSAS-GSG 2184
Query: 2113 SLGTWQQCHSGVDSFYGPPAGYTGPFISPTGGIPGVQGPPHMVVYNHFAPVGQFGQVGLS 2172
LG W QCHSGVDSFYGPPAG+TGPFISP GGIPGVQGPPHMVVYNHFAPVGQFGQVGLS
Sbjct: 2185 PLGAWPQCHSGVDSFYGPPAGFTGPFISPPGGIPGVQGPPHMVVYNHFAPVGQFGQVGLS 2244
Query: 2173 FMGT-YIPSAKQPDWKRNPASSAMGGGEGDVNNLNMVAAQRNPTNLPAPIQHLAPGSPLL 2231
FMGT YIPS KQPDWK NP SSAMG G+GD+NNLNMV+A RNP N+PAPIQHLAPGSPLL
Sbjct: 2245 FMGTTYIPSGKQPDWKHNPTSSAMGIGDGDMNNLNMVSAMRNPPNMPAPIQHLAPGSPLL 2304
Query: 2232 PLASPLAMFDVSPFQPPSDMSVQARWSHVPAPPLQSVPMSMPLQRPTDGVLPSQFNHGTS 2291
P+ASPLAMFDVSPFQ DM +QARWSHVPA PL SVP+S+PLQ+ D LPSQFN +
Sbjct: 2305 PMASPLAMFDVSPFQSSPDMPMQARWSHVPASPLHSVPLSLPLQQQADAALPSQFNQVPT 2364
Query: 2292 ADQSSASNRFPESRNSTPSDSSQNFHAATDATVTQLPEELGLVHASSSTCAGASTQSSVV 2351
D S ++RFPESR STPSD + +F ATDATVTQLP+ELGLV S+STC GAST S
Sbjct: 2365 IDHSLTASRFPESRTSTPSDGAHSFPVATDATVTQLPDELGLVDPSTSTCGGASTPSIAT 2424
Query: 2352 KSLSVSTAADAGKTDTVQNGSSVGQNTSSTFKPQPSQQKNTSSQQYNNLSGYNYQRGSGV 2411
K ST AD KTD V+NGSS Q SS K Q SQQKN S QQYN+ +GYNYQRG V
Sbjct: 2425 K----STIADTVKTDAVKNGSS-SQTASSGLKSQSSQQKNLSGQQYNHSTGYNYQRGV-V 2478
Query: 2412 SQKNSSGGEWSHRRMGFHGRNQSFGAEKGFSPSKMKQIYVAKQTPSGTSTA 2462
SQKN SGGEWSHRRMGF GRNQ+ G +K F SKMKQIYVAKQ SGTST
Sbjct: 2479 SQKNGSGGEWSHRRMGFQGRNQTMGVDKNFPSSKMKQIYVAKQPTSGTSTG 2529
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480807|ref|XP_002277575.2| PREDICTED: uncharacterized protein LOC100266406 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255565158|ref|XP_002523571.1| hypothetical protein RCOM_1407450 [Ricinus communis] gi|223537133|gb|EEF38766.1| hypothetical protein RCOM_1407450 [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449448508|ref|XP_004142008.1| PREDICTED: uncharacterized protein LOC101218305 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|296082428|emb|CBI21433.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449485561|ref|XP_004157208.1| PREDICTED: uncharacterized protein LOC101228330 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356565608|ref|XP_003551031.1| PREDICTED: uncharacterized protein LOC100818172 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356514250|ref|XP_003525819.1| PREDICTED: uncharacterized protein LOC100811678 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|358349430|ref|XP_003638740.1| hypothetical protein MTR_142s1012 [Medicago truncatula] gi|355504675|gb|AES85878.1| hypothetical protein MTR_142s1012 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|224096768|ref|XP_002310728.1| predicted protein [Populus trichocarpa] gi|222853631|gb|EEE91178.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2464 | ||||||
| TAIR|locus:2074795 | 2156 | AT3G50370 "AT3G50370" [Arabido | 0.198 | 0.227 | 0.391 | 7.5e-218 | |
| FB|FBgn0038492 | 2112 | Mur89F "Mucin related 89F" [Dr | 0.187 | 0.218 | 0.191 | 7.6e-10 | |
| CGD|CAL0003874 | 1404 | PGA55 [Candida albicans (taxid | 0.278 | 0.487 | 0.181 | 1.8e-07 | |
| UNIPROTKB|Q59SG9 | 1404 | PGA55 "Flocculin-like protein" | 0.278 | 0.487 | 0.181 | 1.8e-07 | |
| FB|FBgn0036203 | 1514 | Muc68D "Mucin 68D" [Drosophila | 0.295 | 0.481 | 0.170 | 3e-07 | |
| UNIPROTKB|Q939N5 | 3072 | gspB "Platelet binding protein | 0.332 | 0.266 | 0.161 | 2e-06 | |
| UNIPROTKB|Q9NZW4 | 1301 | DSPP "Dentin sialophosphoprote | 0.208 | 0.395 | 0.188 | 2.6e-06 | |
| DICTYBASE|DDB_G0268640 | 784 | DDB_G0268640 "unknown" [Dictyo | 0.207 | 0.651 | 0.210 | 3.2e-05 | |
| DICTYBASE|DDB_G0287625 | 981 | DDB_G0287625 [Dictyostelium di | 0.196 | 0.493 | 0.201 | 3.8e-05 | |
| RGD|1561818 | 1366 | Nhs "Nance-Horan syndrome (con | 0.072 | 0.131 | 0.286 | 0.00011 |
| TAIR|locus:2074795 AT3G50370 "AT3G50370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 7.5e-218, Sum P(4) = 7.5e-218
Identities = 210/536 (39%), Positives = 275/536 (51%)
Query: 1761 FNANKVSQPLAPIGTPAAKSDPQADLRSQTNKSLKNSS-IPVVSGCGKNLASGFIFDSEN 1819
FN Q LAPIGTP+ K D D +S +NKS + SS +PV+ +N ASGF+F ++N
Sbjct: 1512 FNPVSNRQTLAPIGTPSPKIDSHVDEKSGSNKSTQESSALPVIPKNDQNPASGFVFSNKN 1571
Query: 1820 KIMDNVQTSMGSWGNSRLNQQTQLDEAMNPGKFDSCVSVKDHTXXXXXXXXXXXXILTKD 1879
K++DN T +G+WGN +L Q + A+ + D + H +++
Sbjct: 1572 KVLDNSHTPVGTWGN-QLTYQPVM--ALTQSQLDEAMKPVSHLSCVSVENGANR--ISES 1626
Query: 1880 KSFSSSASPINSLLAGEKIQFGAVTSPTVLPPSTRAVSHGIGPPGPCRSDIQISHNLSTP 1939
S S+S P N+ F + TSP ++ G G S I
Sbjct: 1627 NSTSTSVVPKNNT-------FSSSTSPI-----NSLLAEGKIQFGAVTSSTVIPPCGGRT 1674
Query: 1940 ENDCTIFFDKE-KNTSESCVNLEDCXXXXXXXXXXXXXXXXXXXXXXGNGLGTGSVSASE 1998
E D +++F+K+ K+ + S +E C GN L TGSV E
Sbjct: 1675 EKDSSLYFEKDNKHRNPSSTGIEICEAEAEAAASAIAVAAITNDETSGNALSTGSVLPVE 1734
Query: 1999 TKNFGGADTDGIXXXXXXXXXXXXXXXXXXXXLSVALPADLSVETXXXXXXXXXXXXXXX 2058
TK +GG + D L V+LPADLSV+T
Sbjct: 1735 TKIYGGTELDD--GAASGTVGGQTSRSKAEESLIVSLPADLSVDTPISLWPQLPSPHNS- 1791
Query: 2059 NQMISHFPGGLPSHFPLYEMNPLLGGPIFTFGPHEESVPAQSQTQKTASTPGSSSLGTWQ 2118
NQMI+HFP G P H+P Y++NP+L GPIF FGPH ++ QSQ+QK T S TWQ
Sbjct: 1792 NQMITHFPPG-PPHYPFYDVNPMLRGPIFAFGPHHDAGATQSQSQKGPVTV-SGPPTTWQ 1849
Query: 2119 QC-HSGVDSFYGPPAGYTGPFISPTGGIPGVQGPPHMVVYNHFAPVGQFGQVGLSFMGT- 2176
Q HSGVDSFY PPAG+TGPF++P G IPGVQGPPHM VYNHFAPVGQFG GLSFMGT
Sbjct: 1850 QQGHSGVDSFYAPPAGFTGPFLTPPGAIPGVQGPPHMFVYNHFAPVGQFG--GLSFMGTT 1907
Query: 2177 YIPSAKQPDWKRNP-ASSAMGGGEGDVNNLNMVAAQRNPTNLPAPIQHXXXXXXXXXXXX 2235
YIPS KQPDWK NP SS+ GG+GDVNN N+ + Q N +PA +QH
Sbjct: 1908 YIPSGKQPDWKHNPNVSSSPVGGDGDVNNPNVASMQCNI--VPASLQHLPMPMFDPSP-- 1963
Query: 2236 XXXMFDVSPFQPPSDMSVQARWSHVP--APPLQSVPMSMPLQRPTDGVLPS-QFNH 2288
F S +M ++ARW ++P PP ++ M + LPS QFN+
Sbjct: 1964 ----FQSSS----QEMPIRARWPYMPFSGPP--TMQMQKQQEGTDGSNLPSPQFNN 2009
|
|
| FB|FBgn0038492 Mur89F "Mucin related 89F" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0003874 PGA55 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q59SG9 PGA55 "Flocculin-like protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q939N5 gspB "Platelet binding protein GspB" [Streptococcus gordonii (taxid:1302)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0268640 DDB_G0268640 "unknown" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0287625 DDB_G0287625 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| RGD|1561818 Nhs "Nance-Horan syndrome (congenital cataracts and dental anomalies)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019481001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (2362 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2464 | |||
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-15 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-13 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-13 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 6e-13 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 9e-13 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-12 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-12 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-11 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-11 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 5e-11 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 3e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-10 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 5e-10 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 7e-10 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 2e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 2e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-08 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 2e-08 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 6e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-08 | |
| COG0711 | 161 | COG0711, AtpF, F0F1-type ATP synthase, subunit b [ | 1e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 1e-07 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 1e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-07 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 2e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-07 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 3e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-07 | |
| pfam07767 | 387 | pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | 4e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 7e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 9e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-06 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 2e-06 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 2e-06 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 2e-06 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 3e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-06 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 4e-06 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 4e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 6e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-06 | |
| pfam12474 | 142 | pfam12474, PKK, Polo kinase kinase | 6e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-06 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 9e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-05 | |
| COG3334 | 192 | COG3334, COG3334, Uncharacterized conserved protei | 1e-05 | |
| pfam00992 | 131 | pfam00992, Troponin, Troponin | 1e-05 | |
| COG1340 | 294 | COG1340, COG1340, Uncharacterized archaeal coiled- | 1e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-05 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 2e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-05 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 2e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 2e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-05 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 3e-05 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 3e-05 | |
| pfam05701 | 484 | pfam05701, DUF827, Plant protein of unknown functi | 3e-05 | |
| COG1579 | 239 | COG1579, COG1579, Zn-ribbon protein, possibly nucl | 3e-05 | |
| COG1390 | 194 | COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su | 3e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-05 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 4e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 4e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-05 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 5e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 6e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-05 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 6e-05 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 6e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 7e-05 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 7e-05 | |
| TIGR02499 | 166 | TIGR02499, HrpE_YscL_not, type III secretion appar | 7e-05 | |
| pfam03962 | 188 | pfam03962, Mnd1, Mnd1 family | 8e-05 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 9e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 1e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-04 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 1e-04 | |
| pfam00992 | 131 | pfam00992, Troponin, Troponin | 1e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 1e-04 | |
| pfam13863 | 126 | pfam13863, DUF4200, Domain of unknown function (DU | 1e-04 | |
| COG2811 | 108 | COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase su | 1e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 2e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 2e-04 | |
| pfam06098 | 288 | pfam06098, Radial_spoke_3, Radial spoke protein 3 | 2e-04 | |
| pfam12072 | 201 | pfam12072, DUF3552, Domain of unknown function (DU | 2e-04 | |
| COG4487 | 438 | COG4487, COG4487, Uncharacterized protein conserve | 2e-04 | |
| pfam12757 | 126 | pfam12757, DUF3812, Protein of unknown function (D | 2e-04 | |
| pfam05149 | 289 | pfam05149, Flagellar_rod, Paraflagellar rod protei | 2e-04 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 3e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 3e-04 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 3e-04 | |
| COG2811 | 108 | COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase su | 3e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-04 | |
| pfam05914 | 379 | pfam05914, RIB43A, RIB43A | 3e-04 | |
| pfam04502 | 321 | pfam04502, DUF572, Family of unknown function (DUF | 3e-04 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 3e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 3e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 3e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 4e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 4e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 4e-04 | |
| TIGR03825 | 255 | TIGR03825, FliH_bacil, flagellar assembly protein | 4e-04 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 4e-04 | |
| PRK14475 | 167 | PRK14475, PRK14475, F0F1 ATP synthase subunit B; P | 4e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 5e-04 | |
| COG5269 | 379 | COG5269, ZUO1, Ribosome-associated chaperone zuoti | 5e-04 | |
| TIGR01843 | 423 | TIGR01843, type_I_hlyD, type I secretion membrane | 5e-04 | |
| cd00176 | 213 | cd00176, SPEC, Spectrin repeats, found in several | 5e-04 | |
| PRK06669 | 281 | PRK06669, fliH, flagellar assembly protein H; Vali | 5e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 6e-04 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 6e-04 | |
| COG2811 | 108 | COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase su | 6e-04 | |
| pfam00261 | 237 | pfam00261, Tropomyosin, Tropomyosin | 6e-04 | |
| pfam00430 | 132 | pfam00430, ATP-synt_B, ATP synthase B/B' CF(0) | 6e-04 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 6e-04 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 6e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-04 | |
| PRK02292 | 188 | PRK02292, PRK02292, V-type ATP synthase subunit E; | 7e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 8e-04 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 8e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.001 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 0.001 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.001 | |
| COG4487 | 438 | COG4487, COG4487, Uncharacterized protein conserve | 0.001 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 0.001 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| PRK08404 | 103 | PRK08404, PRK08404, V-type ATP synthase subunit H; | 0.001 | |
| TIGR02473 | 141 | TIGR02473, flagell_FliJ, flagellar export protein | 0.001 | |
| TIGR02926 | 85 | TIGR02926, AhaH, ATP synthase archaeal, H subunit | 0.001 | |
| COG3599 | 212 | COG3599, DivIVA, Cell division initiation protein | 0.001 | |
| PRK09174 | 204 | PRK09174, PRK09174, F0F1 ATP synthase subunit B'; | 0.001 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 0.001 | |
| pfam12203 | 92 | pfam12203, HDAC4_Gln, Glutamine rich N terminal do | 0.001 | |
| pfam09321 | 241 | pfam09321, DUF1978, Domain of unknown function (DU | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| COG0711 | 161 | COG0711, AtpF, F0F1-type ATP synthase, subunit b [ | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.002 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.002 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.002 | |
| PRK08404 | 103 | PRK08404, PRK08404, V-type ATP synthase subunit H; | 0.002 | |
| PLN02316 | 1036 | PLN02316, PLN02316, synthase/transferase | 0.002 | |
| pfam05300 | 187 | pfam05300, DUF737, Protein of unknown function (DU | 0.002 | |
| PRK03963 | 198 | PRK03963, PRK03963, V-type ATP synthase subunit E; | 0.002 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 0.002 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 0.002 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 0.003 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.003 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.003 | |
| pfam13863 | 126 | pfam13863, DUF4200, Domain of unknown function (DU | 0.003 | |
| COG1293 | 564 | COG1293, COG1293, Predicted RNA-binding protein ho | 0.003 | |
| COG4717 | 984 | COG4717, COG4717, Uncharacterized conserved protei | 0.003 | |
| COG1842 | 225 | COG1842, PspA, Phage shock protein A (IM30), suppr | 0.003 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 0.004 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.004 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.004 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 0.004 | |
| TIGR03825 | 255 | TIGR03825, FliH_bacil, flagellar assembly protein | 0.004 | |
| pfam00430 | 132 | pfam00430, ATP-synt_B, ATP synthase B/B' CF(0) | 0.004 | |
| TIGR02926 | 85 | TIGR02926, AhaH, ATP synthase archaeal, H subunit | 0.004 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 0.004 | |
| pfam10147 | 217 | pfam10147, CR6_interact, Growth arrest and DNA-dam | 0.004 | |
| COG5281 | 833 | COG5281, COG5281, Phage-related minor tail protein | 0.004 | |
| pfam09805 | 134 | pfam09805, Nop25, Nucleolar protein 12 (25kDa) | 0.004 | |
| pfam13654 | 509 | pfam13654, AAA_32, AAA domain | 0.004 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-15
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 568 RESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQ-RRRLEEETR 626
E EAE ++ +E+E R+ +QE A + REE + LR QEE R+ ++E
Sbjct: 166 EEEREAERRERKEEKEREVARLRAQQEEAED--EREELDELRADLYQEEYERKERQKEKE 223
Query: 627 EAVWRAEQEQ-LEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAE 685
EA R Q+Q L+ R+ + + + +R E ER + KQ +E + + AE
Sbjct: 224 EAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQA---EDEELEQENAE 280
Query: 686 AAK 688
+
Sbjct: 281 KRR 283
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|201540 pfam00992, Troponin, Troponin | Back alignment and domain information |
|---|
| >gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) | Back alignment and domain information |
|---|
| >gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
| >gnl|CDD|233897 TIGR02499, HrpE_YscL_not, type III secretion apparatus protein, HrpE/YscL family | Back alignment and domain information |
|---|
| >gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|201540 pfam00992, Troponin, Troponin | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3 | Back alignment and domain information |
|---|
| >gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552) | Back alignment and domain information |
|---|
| >gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812) | Back alignment and domain information |
|---|
| >gnl|CDD|113902 pfam05149, Flagellar_rod, Paraflagellar rod protein | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|147845 pfam05914, RIB43A, RIB43A | Back alignment and domain information |
|---|
| >gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572) | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|184697 PRK14475, PRK14475, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here | Back alignment and domain information |
|---|
| >gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin | Back alignment and domain information |
|---|
| >gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0) | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ | Back alignment and domain information |
|---|
| >gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit | Back alignment and domain information |
|---|
| >gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|169692 PRK09174, PRK09174, F0F1 ATP synthase subunit B'; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone deacetylase 4 | Back alignment and domain information |
|---|
| >gnl|CDD|220178 pfam09321, DUF1978, Domain of unknown function (DUF1978) | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase | Back alignment and domain information |
|---|
| >gnl|CDD|218545 pfam05300, DUF737, Protein of unknown function (DUF737) | Back alignment and domain information |
|---|
| >gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH | Back alignment and domain information |
|---|
| >gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0) | Back alignment and domain information |
|---|
| >gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit | Back alignment and domain information |
|---|
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible proteins-interacting protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa) | Back alignment and domain information |
|---|
| >gnl|CDD|222290 pfam13654, AAA_32, AAA domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2464 | |||
| PTZ00121 | 2084 | MAEBL; Provisional | 98.74 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 98.73 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 98.61 | |
| PF07001 | 189 | BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This | 98.56 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.53 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 98.49 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 98.48 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 98.43 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.23 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 98.06 | |
| COG3064 | 387 | TolA Membrane protein involved in colicin uptake [ | 98.0 | |
| PRK09510 | 387 | tolA cell envelope integrity inner membrane protei | 97.78 | |
| COG3064 | 387 | TolA Membrane protein involved in colicin uptake [ | 97.67 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 97.67 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 97.62 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 97.62 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 97.51 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 97.5 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 97.46 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 97.24 | |
| PF12037 | 276 | DUF3523: Domain of unknown function (DUF3523); Int | 97.07 | |
| KOG2072 | 988 | consensus Translation initiation factor 3, subunit | 97.0 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 97.0 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 96.92 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 96.68 | |
| KOG2072 | 988 | consensus Translation initiation factor 3, subunit | 96.48 | |
| PF12037 | 276 | DUF3523: Domain of unknown function (DUF3523); Int | 96.17 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 96.04 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 95.74 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 95.59 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 95.24 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 94.97 | |
| KOG3654 | 708 | consensus Uncharacterized CH domain protein [Cytos | 94.33 | |
| PRK12705 | 508 | hypothetical protein; Provisional | 92.73 | |
| KOG4817 | 468 | consensus Unnamed protein [Function unknown] | 91.4 | |
| KOG3654 | 708 | consensus Uncharacterized CH domain protein [Cytos | 91.37 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 90.91 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 90.89 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 90.83 | |
| KOG1103 | 561 | consensus Predicted coiled-coil protein [Function | 90.64 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 90.63 | |
| KOG2689 | 290 | consensus Predicted ubiquitin regulatory protein [ | 90.5 | |
| PF02029 | 492 | Caldesmon: Caldesmon; InterPro: IPR006018 This gro | 89.42 | |
| PF10147 | 217 | CR6_interact: Growth arrest and DNA-damage-inducib | 88.04 | |
| PF05914 | 379 | RIB43A: RIB43A; InterPro: IPR008805 This family co | 87.39 | |
| PLN02316 | 1036 | synthase/transferase | 87.15 | |
| KOG2507 | 506 | consensus Ubiquitin regulatory protein UBXD2, cont | 87.04 | |
| PF06637 | 442 | PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th | 86.96 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 86.5 | |
| PTZ00491 | 850 | major vault protein; Provisional | 86.3 | |
| PTZ00491 | 850 | major vault protein; Provisional | 86.29 | |
| COG2268 | 548 | Uncharacterized protein conserved in bacteria [Fun | 86.23 | |
| KOG1103 | 561 | consensus Predicted coiled-coil protein [Function | 86.14 | |
| PF09731 | 582 | Mitofilin: Mitochondrial inner membrane protein; I | 85.84 | |
| KOG4722 | 672 | consensus Zn-finger protein [General function pred | 85.58 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 85.43 | |
| KOG3634 | 361 | consensus Troponin [Cytoskeleton] | 85.09 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 84.71 | |
| PLN02316 | 1036 | synthase/transferase | 84.67 | |
| KOG2507 | 506 | consensus Ubiquitin regulatory protein UBXD2, cont | 84.02 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 83.84 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 83.69 | |
| KOG0982 | 502 | consensus Centrosomal protein Nuf [Cell cycle cont | 83.1 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 82.21 | |
| KOG3634 | 361 | consensus Troponin [Cytoskeleton] | 81.99 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 81.61 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 81.51 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 81.18 | |
| PRK13428 | 445 | F0F1 ATP synthase subunit delta; Provisional | 81.08 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 81.01 | |
| PRK12472 | 508 | hypothetical protein; Provisional | 80.24 |
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=123.04 Aligned_cols=10 Identities=50% Similarity=0.610 Sum_probs=6.4
Q ss_pred cccccccccC
Q 000064 82 SLRKEHERFD 91 (2464)
Q Consensus 82 slrkehe~~d 91 (2464)
---+.-+|||
T Consensus 603 pq~~~m~rfd 612 (2084)
T PTZ00121 603 PQQKFMERFD 612 (2084)
T ss_pred cHHHHHHhcC
Confidence 3456677777
|
|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2 | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK12705 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG4817 consensus Unnamed protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
| >KOG1103 consensus Predicted coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein | Back alignment and domain information |
|---|
| >PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases | Back alignment and domain information |
|---|
| >PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins | Back alignment and domain information |
|---|
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
| >KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals | Back alignment and domain information |
|---|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PTZ00491 major vault protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00491 major vault protein; Provisional | Back alignment and domain information |
|---|
| >COG2268 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >KOG1103 consensus Predicted coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology | Back alignment and domain information |
|---|
| >KOG4722 consensus Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG3634 consensus Troponin [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
| >KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG3634 consensus Troponin [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13428 F0F1 ATP synthase subunit delta; Provisional | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK12472 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 4e-15
Identities = 90/694 (12%), Positives = 182/694 (26%), Gaps = 232/694 (33%)
Query: 419 ETKFMSSPFRDTVQD-------DSGRRDI-DYGPGGRQPWNNSV--HSFNS----QRAER 464
ET ++D + + +D+ D + + H S R
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP---KSILSKEEIDHIIMSKDAVSGTLR 66
Query: 465 NPW--EQYGSEQYNRFRGDAFQRS---------------SASKSSFSSGGRGFPHNDPMH 507
W E +F + + + S + D ++
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE------QRDRLY 120
Query: 508 NFSRDKRPLLK----REEPY----------QDDPF-----MKDFGSSSFDGRDPFSAGLV 548
N D + K R +PY + + G + +
Sbjct: 121 N---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----------VA 167
Query: 549 GVVKKKKDVLKQTDFHDPV-------RESFEAELERVQKMQEQERQRIIEEQERALELAR 601
V V + DF + S E LE +QK+ Q + + +
Sbjct: 168 LDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 602 REEEERLRVAREQEEQRRR-----LEEETREAVWRAEQEQLEA----------TRKAEEQ 646
R + + R + + L V A + A TR +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLN-----VQNA--KAWNAFNLSCKILLTTRFKQVT 278
Query: 647 RIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSSGL-- 704
I ++ ++ L + K D D+ E +
Sbjct: 279 DFLSAATTTHISLDHH-SMTLTPDEVKSL---LLK------YLDCRPQDLPREVLTTNPR 328
Query: 705 ------AKERDLPKMADVGDWE--DGERMVERITTSASSDSSGLHRS-FDMSSRNQFA-- 753
RD D +W+ + +++ I +S + +R FD + +
Sbjct: 329 RLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-----RLSVF 381
Query: 754 RDN---SSGFLDRGKPFNSW----RRDAFESGN---SSTFITQDAENGHYS--------- 794
+ + L W + D N + + + + S
Sbjct: 382 PPSAHIPTILLSL-----IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 795 -PRRDSAFGGRAVPRK--EFYGGPGIMSSRNYYKAGILEPHMDEFTVSRGQRWNMSGDGD 851
+ A+ R + Y P + + ++ P++D++ S
Sbjct: 437 VKLENEY----ALHRSIVDHYNIP-----KTFDSDDLIPPYLDQYFYS------------ 475
Query: 852 HYG---RNIEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYPNPETDVISSFGRS 908
H G +NIE + D + + + R H N ++
Sbjct: 476 HIGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIR---HDSTA----WNASGSIL------ 521
Query: 909 RYSMRHPRVLPPPTLTSMQKPSYRRENECPSPSTFQENEVEYNRLLRS-----ESISLAG 963
TL ++ Y+ +N+ +Y RL+ + I
Sbjct: 522 ------------NTLQQLKF--YKPY--------ICDNDPKYERLVNAILDFLPKIE-EN 558
Query: 964 LDRSEQHNLAQPEIIDVQPEST---ENEEQNLER 994
L S+ +L + I + E E + ++R
Sbjct: 559 LICSKYTDLLR---IALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M Length = 155 | Back alignment and structure |
|---|
| >2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M Length = 155 | Back alignment and structure |
|---|
| >2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M Length = 155 | Back alignment and structure |
|---|
| >2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M Length = 155 | Back alignment and structure |
|---|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 135 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis} Length = 169 | Back alignment and structure |
|---|
| >3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis} Length = 169 | Back alignment and structure |
|---|
| >3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis} Length = 169 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 | Back alignment and structure |
|---|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 154 | Back alignment and structure |
|---|
| >3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A Length = 120 | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Length = 147 | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Length = 147 | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 | Back alignment and structure |
|---|
| >2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332 | Back alignment and structure |
|---|
| >2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332 | Back alignment and structure |
|---|
| >2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332 | Back alignment and structure |
|---|
| >2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens} Length = 279 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1 Length = 438 | Back alignment and structure |
|---|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189 | Back alignment and structure |
|---|
| >2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H Length = 423 | Back alignment and structure |
|---|
| >3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens} Length = 273 | Back alignment and structure |
|---|
| >2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2464 | |||
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 93.97 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 93.8 | |
| 2zuo_A | 861 | MVP, major vault protein; repeat domains, protein- | 91.16 | |
| 2zuo_A | 861 | MVP, major vault protein; repeat domains, protein- | 91.1 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 89.97 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 89.52 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 89.02 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 87.5 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 87.42 | |
| 4f61_I | 240 | Stathmin-like domain R4; alpha-tubulin, beta-tubul | 87.11 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 82.16 |
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.35 Score=70.89 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhHHhhhhhhccccccC-----CcchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000064 548 VGVVKKKKDVLKQTDFH-----DPVRESFE--AELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRR 620 (2464)
Q Consensus 548 le~VKKKKEeaKq~E~E-----EklREEeE--aELERRqEeEEEEReReEEEQEREEEEaRKEEEEreReaREEEERRRR 620 (2464)
..++.+|+++......+ +++++..+ .++++..+.++.+.+++.++.++..++..+++++.++++++.++.+++
T Consensus 1905 ~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~ 1984 (3245)
T 3vkg_A 1905 VLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQ 1984 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Q 000064 621 LEEETREAVWRAEQEQLEATRKA-EEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADE 699 (2464)
Q Consensus 621 eEEEEREKEEREEKEReEAERRE-EEERKrrEEEErRrEEEEERRREEEEQRRqEEEERkKKrQaEeEKrrkqAEakakE 699 (2464)
.++++++.+++++..+++-++.+ .+-++++-++.++..++.+++..+.+++..+.+++.++.+++-++..+++++.+.+
T Consensus 1985 ~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 1985 LDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccchhh
Q 000064 700 KSSGLAK 706 (2464)
Q Consensus 700 Kaeq~kk 706 (2464)
......+
T Consensus 2065 ~~~~~~k 2071 (3245)
T 3vkg_A 2065 SSKVKNK 2071 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2464 | ||||
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 9e-12 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 8e-11 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-09 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 8e-09 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-11 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-11 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 1e-09 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 9e-09 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 1e-06 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 5e-04 | |
| d2ap3a1 | 185 | a.24.27.1 (A:12-196) Hypothetical protein MW0975 ( | 6e-05 | |
| d2ap3a1 | 185 | a.24.27.1 (A:12-196) Hypothetical protein MW0975 ( | 2e-04 |
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.3 bits (161), Expect = 9e-12
Identities = 14/116 (12%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 568 RESFEAELERVQKMQEQERQRIIEEQERALELARR---EEEERLRVAREQEEQRRRLEEE 624
+ES + + + ++ + I E+ +A E + + + E++ R +E
Sbjct: 185 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 244
Query: 625 TREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLE-LEERI 679
++ + E ++++ ++ E + +E+++++ E +++ + ++ L+ ++
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} Length = 185 | Back information, alignment and structure |
|---|
| >d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} Length = 185 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00