Citrus Sinensis ID: 000073

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------2070------2080------2090------2100------2110------2120------2130------2140------2150------2160------2170------2180------2190------2200------2210------2220------2230------2240------2250------2260------2270------2280------2290------2300------2310------2320------2330------2340------2350------2360------2370------2380------2390------2400------2410------2420-

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHccccccccHHcHHHHHHHHHHHHccccHHHHHHHHHcHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEEHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccc

cccccHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEccccccccccccHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHccccEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEHHHHHccccHHcccccHHHccccHHHccccccccccccccccccccccccccccccccccccHHHccccccccccHHHHHcccccccccccccccccccHcccccccccccHHcccccccccccccccHccccccccEEEEcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHccccccccccHcccHcccccccccccccccccccccHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccccHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHcccccccccccccccccccc

mlrlsstvPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLnlhgtglknpqlESVVASVFKYimdkpnfstvfSQSVKITEINEQLLENLSDVLnlslperigiglalsdsenldalmcgkNFCMAQIERlcanpvpmnsaEQIQNIIMFLQRSSDLSKHVDSLMQILSLLqskdhtqfvlnpvlpdelhdatslrdldlfhecrdddFDDILAEMEKEMSMGDVmnelgygcsadasQCKEILSLFTPLTEITLSRILGAIARThaglednqntfSTFTLALgcstmsdlpplsswnVDVLVKAIKQlapntnwiRVVENldyegfyiptEEAFSFFMSVYKYacqepfplhavcgsvwknteGQLSFLRYavasppevftfahsarqlpyvdavpglklqsgqanhAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHvnpnivlrgfvdaqnmepdCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVqfgrsqdfsaqpfhhsgaLLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLdstprlqngeaadsstsegyaDDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGnlfeeyrffpkypeRQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDAlrkpadskmfVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISsghlesdgasnpaahqhvssqatsgngevsgsgiTQLGQQLSSQIQLQqrsesvvddrhkvsaasssdmkpllssigqpssvaplgdtssaqKLHNavsapamlsissgfarpsrgvtstkfgsALNIETLVAAAERretpieapasevQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFtskilepcqsslayqppnpwTMAILGLLAEIysmpnlkmnLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgasqpqlvpevkpaivsplghvdlpldvasppnsggpthllsqyaaplrlssgtlmedeKLAALgisdqlpsaqglfqasqsqspfsvsqlstpipnigthvIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSlahvtckeplrgsiSSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRkhregvgssffdpniyaqgsmgvpealrpkpghlsvsqQRVYEdfvrlpwqnqssqgshamsagsltssgdaaqasayglaggqgnqgysssagstgfdavsrpsdvasgttestsagflSTSLVHigaadggilhnsesesvnaaftpAATElyaadstepvkepgassqslpstaaperigssilepslqtrdaLDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYenasnnlhFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLaakpgspesLQQLIEIVRnpaananassgattakddkarqskdkkayshttanredynipesvdpdpvgfpeQVSMLFAEWYQicelpgsndaACTRYVLQLHqngllkgddmTDRFFRRLTEVSVAHClssevinpgtlqspqqsqsLSFLAIDIYAKLMLSILKccpveqgsskiFLLSKILTVTVKFILKDAeekkasfnprpyFRLFINWLldmssldpvadgsnfQILSAFANAFHvlqplkvpaFSFAWLELVShrsfmpklligngqkgwPYIQRLLVNLLQFLEPFlrnaelgvpvrfLYKGTLRVLLVLLHdfpeflcdyhftfcdvippsciQMRNIILsafprnmrlpdpstpnlkidllpeirdpprifSEVDAALRAKQMRADVDdylktgqpgssfLSELKQklllppseaasagtrynvplINSLVLYVGMQAIHQLQTRtshaqstgnnsSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAAnqlrypnnhthYFSFVLLYLYAEANQEIIQEQITRVLFERLivnrphpwgLLITFIELiknprynfwnqsfiRCAPEIEKLFESVArscgglkpvddsmvsgwvpdnth

mlrlsstvpsQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKqlapntnwirVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVvldstprlqngeaadsstseGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSaasssdmkpllSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGvtstkfgsalNIETLVAAAERRETPieapasevqdkISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKnlgswlgkltigrnqvlrareidpkSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSgivqrsvsiatqttkelvlKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKepgassqslpstaaperigSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTswviysdeerkfnrdITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAananassgattakddkarqskdkkayshttanredynipesVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDaeekkasfnprpYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKidllpeirdppRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGglkpvddsmvsgwvpdnth

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWlcldlldvlcqlSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVsgsgitqlgqqlssqiqlqqRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPaananassgattaKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTlqspqqsqslsFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

***********IRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVL***************************ANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI***************************************************************************************************************************GSALNIETLVA***************VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIK******SLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT********************************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL********GSSFFDPNIYA***********************VYEDFVRLPW********************************************************************FLSTSLVHIGAADGGIL***********************************************************DALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLA*******************************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVIN************LSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN************IDLL********IF***********************************************GTRYNVPLINSLVLYVGMQAIHQLQT************SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPV**************

****SSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGT**KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQ************MQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECR***************SMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHA***********FTL*L**********LSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLP*************QANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVK***************************KIPVILKLLKAHI**********EIEKFQAVVLDSTPRLQN****************EAEANSYFHQMFSGQLTIEAMVQM*************SIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERA**********************************************************************************************************************************LNIETLVAAAE***********EVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKD*************************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRN**************AVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL***********FFDPNIYAQGSMGVP**************QRVYEDF**********************************************************************************************************************************************EPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAK*****************************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCL******************LSFLAIDIYAKLMLSILKCCP**QGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPST**********IRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPG**********************TRYNVPLINSLVLYVGMQAIH***********************SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVA***********************

********PSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQ***********GYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSG****************************GSGITQLG**********************************LSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLF**************STPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQN*******************AAQASAYGLAGGQ*******************************SAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADS********************ERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAAN****************************ANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQ************NNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

*LRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQ************LLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI****************************************************************************************************************************SALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR************************************************************************************************SPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPW************************************************************************************************************************QS**STAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAA***************************************SVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEV**********QSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRT**********SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGL*****************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		2421	2.2.26 [Sep-21-2011]
Q6ZQ08		2375	CCR4-NOT transcription co	yes	no	0.298	0.304	0.436	1e-173
A5YKK6		2376	CCR4-NOT transcription co	yes	no	0.298	0.304	0.437	1e-172
A0JP85		2388	CCR4-NOT transcription co	yes	no	0.285	0.289	0.447	1e-172
A1A5H6		2374	CCR4-NOT transcription co	yes	no	0.299	0.305	0.434	1e-171
P87112		2100	General negative regulato	yes	no	0.494	0.569	0.283	1e-134
P25655		2108	General negative regulato	yes	no	0.274	0.314	0.262	1e-73
Q8Y5X6		365	3-dehydroquinate synthase	yes	no	0.029	0.197	0.370	0.0001

>sp\|Q6ZQ08\|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2	Back alignment and function desciption

 Score =  610 bits (1572), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 343/786 (43%), Positives = 477/786 (60%), Gaps = 63/786 (8%)

Query: 1653 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNN---- 1707
            Q L A+    A   + Q + S +  ++L   SRD  AAL + QK  +GL +  S      
Sbjct: 1620 QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL 1679

Query: 1708 --LHFSAHLAILAAIRD-------VCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELL 1758
               +   HL +L A++D        C    K++T  +I   +E K+N +    LIR+ L+
Sbjct: 1680 LLRYRECHLLVLKALQDGRAYGSPWCN---KQITRCLIECRDEYKYNVEAVELLIRNHLV 1736

Query: 1759 NLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE---SRVVISELHNLVDALAKLAA- 1814
            N+ +Y++H+A+ ++ G N  A  FA+ L++ L+ DE   + +  ++L + ++ L ++ A 
Sbjct: 1737 NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAH 1796

Query: 1815 -KPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPE 1873
             +  +PE L QL+E+VR+             A  D+A    +   +S  +   E Y+   
Sbjct: 1797 SRGNAPEGLPQLMEVVRS----------NYEAMIDRAHGGPNFMMHSGISQASE-YD--- 1842

Query: 1874 SVDPDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFF 1930
                DP G  E+   L  EW   Y        +  A + +V Q+HQ G+LK DD+  RFF
Sbjct: 1843 ----DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFF 1898

Query: 1931 RRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK-CCPVEQGS 1986
            R  TE+ V       + +  NP    +P   ++  +  +D + +L+  ++K         
Sbjct: 1899 RLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV 1956

Query: 1987 SKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILS 2046
            +KI LL+K+L + V  +L+D + +++ F   PY R+FI  LL++++ + V +  NFQ L+
Sbjct: 1957 TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT 2016

Query: 2047 AFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGWPYIQRLLVNLLQFLEP 2105
            AF N FH+L+P K P F +AWLEL+SHR F+ ++L     QKGWP   +LL++L ++L P
Sbjct: 2017 AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP 2076

Query: 2106 FLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP 2165
            FLRN EL  P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFP
Sbjct: 2077 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP 2136

Query: 2166 RNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSE 2225
            RNMRLPDP TPNLK+D+L EI   PRI +     +   Q + D+D YLKT  P  +FLS+
Sbjct: 2137 RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDLDSYLKTRSP-VTFLSD 2194

Query: 2226 LKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLV 2285
            L+  L +    +   G RYN+ LIN+LVLYVG QAI       +H  + G+  S++    
Sbjct: 2195 LRSNLQV----SNEPGNRYNLQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITH 2243

Query: 2286 SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQI 2345
            SA +DIFQ L  DLDTEGRYLFLNA ANQLRYPN+HTHYFS  +LYL+AEAN E IQEQI
Sbjct: 2244 SAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI 2303

Query: 2346 TRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLK 2405
            TRVL ERLIVNRPHPWGLLITFIELIKNP + FWN  F+ CAPEIEKLF+SVA+ C G K
Sbjct: 2304 TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQK 2363

Query: 2406 PVDDSM 2411
                 M
Sbjct: 2364 QAQQVM 2369

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.
Mus musculus (taxid: 10090)

>sp\|A5YKK6\|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2	Back alignment and function description

>sp\|A0JP85\|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|A1A5H6\|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|P87112\|NOT1_SCHPO General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not1 PE=1 SV=1	Back alignment and function description

>sp\|P25655\|NOT1_YEAST General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3	Back alignment and function description

>sp\|Q8Y5X6\|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2421
255541160		2330	ccr4-not transcription complex, putative	0.961	0.999	0.741	0.0
449433000		2427	PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT	0.985	0.983	0.726	0.0
356523091		2424	PREDICTED: CCR4-NOT transcription comple	0.986	0.985	0.735	0.0
357512789		2410	CCR4-NOT transcription complex subunit [	0.978	0.982	0.700	0.0
356504613		2327	PREDICTED: CCR4-NOT transcription comple	0.953	0.992	0.710	0.0
357512787		2418	CCR4-NOT transcription complex subunit [	0.978	0.979	0.698	0.0
297734545		2452	unnamed protein product [Vitis vinifera]	0.984	0.971	0.690	0.0
359489261		2333	PREDICTED: CCR4-NOT transcription comple	0.960	0.996	0.671	0.0
297842912		2379	hypothetical protein ARALYDRAFT_887229 [	0.976	0.993	0.653	0.0
334182230		2377	CCR4-NOT transcription complex subunit 1	0.977	0.995	0.655	0.0

>gi\|255541160\|ref\|XP_002511644.1\| ccr4-not transcription complex, putative [Ricinus communis] gi\|223548824\|gb\|EEF50313.1\| ccr4-not transcription complex, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 3677 bits (9535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1797/2423 (74%), Positives = 2034/2423 (83%), Gaps = 95/2423 (3%)

Query: 1    MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGL 60
            M  LSST+ +Q+RFLL SLNE N DSVFRELC+F E G++ S ++LQTC++H+N   T L
Sbjct: 1    MPTLSSTISNQVRFLLHSLNEDNLDSVFRELCKFTENGLDESIVVLQTCLEHVNFQRTDL 60

Query: 61   KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLA 120
            KN QL+ V+ S+FK+++D+PNFSTV  QS++ +EI+E+ L+N S+VL+LSL E+I IGLA
Sbjct: 61   KNMQLQPVILSIFKFLLDRPNFSTVLCQSLRSSEISEEFLDNFSNVLHLSLSEKIAIGLA 120

Query: 121  LSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQI 180
            LSDSEN++  M  K FC+AQIE LC+NPV MNSA+QIQNI+MFLQ+S   +KHVD  +Q+
Sbjct: 121  LSDSENIETRMGAKKFCIAQIEELCSNPVSMNSAQQIQNIVMFLQQSEGHTKHVDPFLQM 180

Query: 181  LSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMN 240
            LSL+Q KD   F L P+L DE+ +A  LR++DLFHEC++++FD +LAEMEKEM+ G+++ 
Sbjct: 181  LSLVQPKDVFPFFLTPLLSDEMREANFLRNMDLFHECQENEFDALLAEMEKEMNAGEIVK 240

Query: 241  ELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCST 300
            ELGYGC+ D+S CKEILS F PLTE T+S+ILG IAR HAGLE+NQ+TFS F LALGCS 
Sbjct: 241  ELGYGCTFDSSHCKEILSNFLPLTESTISKILGTIARNHAGLEENQSTFSNFGLALGCSI 300

Query: 301  MSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQ 360
             +DLPPL SW++D+LVK IKQLAP TNWI+VVEN+DYEGFYIP EEAFSFFMSVY++A Q
Sbjct: 301  STDLPPLGSWDIDILVKTIKQLAPGTNWIKVVENMDYEGFYIPNEEAFSFFMSVYRHASQ 360

Query: 361  EPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQAN 420
            + FP+H +CGSVWKN  GQLS L+YAV +PPEVFTFAHS RQL Y DAV G KLQ G AN
Sbjct: 361  DLFPVHVLCGSVWKNALGQLSLLKYAVLAPPEVFTFAHSGRQLVYNDAVHGQKLQVGHAN 420

Query: 421  HAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFA 480
            HAWL LDLL+VLCQL+E GH+S  RS+LEYPLK CPE+LLLGM+HINTAY L+QYEVSF 
Sbjct: 421  HAWLSLDLLEVLCQLAERGHSSSVRSILEYPLKHCPEILLLGMSHINTAYKLLQYEVSFT 480

Query: 481  VFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEM 540
            VFPMIIKST S+GMIL++WH+NPN+V+RGFVDA N+EPDCTI+IL+ICQELKILSSVL+M
Sbjct: 481  VFPMIIKSTTSSGMILYLWHINPNVVVRGFVDAYNIEPDCTIKILDICQELKILSSVLDM 540

Query: 541  IPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPF 600
            IP    IRLAV+AS+KEL+DLEKWL+ NL  YKD FFEE               FS++PF
Sbjct: 541  IPYAIGIRLAVLASRKELIDLEKWLTTNLIAYKDFFFEE---------------FSSKPF 585

Query: 601  HHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSS 660
            HH+ +++N+YME   + LK+LKA  GLI S++LS+E+E+    + DS PRLQNG +ADSS
Sbjct: 586  HHASSVVNIYMEASSIFLKVLKAQTGLIISSQLSDEMERLHITITDSNPRLQNGGSADSS 645

Query: 661  TSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEY 720
            T E ++DD+EAEANSYFHQMFSGQLTIEAMVQMLARFKES V+RE  IFECMIGNLFEEY
Sbjct: 646  TPEPFSDDVEAEANSYFHQMFSGQLTIEAMVQMLARFKESPVRREQLIFECMIGNLFEEY 705

Query: 721  RFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE 780
            RFFPKYPERQL+IAAVLFGS+IKHQLVTHLTLGIALRGVLDALRKP DSKMF+FGTKAL+
Sbjct: 706  RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFIFGTKALD 765

Query: 781  QFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVS 840
            QFVDRLIEWPQYCNHILQISHLR+TH+E+V+FIER LARISSGHLESDG +  A+H H  
Sbjct: 766  QFVDRLIEWPQYCNHILQISHLRTTHSEIVSFIERQLARISSGHLESDGNNGSASHHHGL 825

Query: 841  SQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQP 900
            SQA+SGNGE+    I Q  QQLSS + +QQR ES +D+RHKV  ASS+D K +LSS GQ 
Sbjct: 826  SQASSGNGELISVNIPQSVQQLSSTLNVQQRHESPLDERHKVFLASSNDTKSVLSSGGQ- 884

Query: 901  SSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRE 960
            SSVAPL D S AQK  +A  A AMLS S GF RPSRGVTSTKFGSALNI TL AAAERRE
Sbjct: 885  SSVAPLSDNSIAQK--SAAGATAMLSSSHGFIRPSRGVTSTKFGSALNIGTLEAAAERRE 942

Query: 961  TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF 1020
            TPIEAPASE+QDKISFIINNISA N+EAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF
Sbjct: 943  TPIEAPASEIQDKISFIINNISAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF 1002

Query: 1021 HDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG 1080
            HDLYLKFLDKV+SKALN+EIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
Sbjct: 1003 HDLYLKFLDKVSSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG 1062

Query: 1081 RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLA 1140
            RN VLR REIDPKSLIIEAYEKGLMIAVIPFTSK                          
Sbjct: 1063 RNHVLRGREIDPKSLIIEAYEKGLMIAVIPFTSK-------------------------- 1096

Query: 1141 EIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQ 1200
                             VLFKNLGVDMKDI PTSLLKDRKRE+EGNPDFSNKDVG SQPQ
Sbjct: 1097 -----------------VLFKNLGVDMKDIAPTSLLKDRKREMEGNPDFSNKDVGVSQPQ 1139

Query: 1201 LVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGI 1260
            +VPEVKP I+SPL HVDLPL+VA+PPN+ G THLL QYAAP+ LS GTL EDEKLAALG+
Sbjct: 1140 IVPEVKPGIISPLNHVDLPLEVANPPNAVGHTHLLPQYAAPVNLSVGTLTEDEKLAALGM 1199

Query: 1261 SDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMD 1320
            SDQLP  QGLFQA+ +QSPFSVSQL T +PN GT VIINQK  + GLHLHFQR+VP+ MD
Sbjct: 1200 SDQLPPGQGLFQATPNQSPFSVSQLPTALPNFGTLVIINQKFNSWGLHLHFQRLVPLVMD 1259

Query: 1321 RAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK 1380
            RA+KEIVS IVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK
Sbjct: 1260 RAVKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK 1319

Query: 1381 EPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEI 1440
            EPLR SIS+QLRNSLQGL   S+LLE AVQL TNDNLDLGCA IEQAATDKAIQTID EI
Sbjct: 1320 EPLRNSISTQLRNSLQGLNSTSDLLEHAVQLATNDNLDLGCAAIEQAATDKAIQTIDAEI 1379

Query: 1441 AQQLSLRRKHREGVGSSFFDPNIYAQGSMGV-PEALRPKPGHLSVSQQRVYEDFVRLPWQ 1499
            AQQLSLRRKHR+GVG +FFD N+Y+QGSMGV PEALRPKPGHLSVSQQRVYEDFVRLPWQ
Sbjct: 1380 AQQLSLRRKHRDGVGPTFFDANLYSQGSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQ 1439

Query: 1500 NQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGT 1559
            NQS QGSH +  GS TS+   A A AYG   GQ N GYSS+ G+ GF+AVSR  D+ S  
Sbjct: 1440 NQSGQGSHTIPMGSSTSAVSTALAGAYGSGSGQLNPGYSSAPGNVGFEAVSRTLDMGSDA 1499

Query: 1560 TESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAA-TELYAADSTEPVKEPGASS 1618
            TES SA  LS+S +HIGA DG I  NSE+ + + +F+ AA    ++ D+++ VKE G SS
Sbjct: 1500 TESNSAAILSSSSIHIGATDGAIQPNSENSATSVSFSSAAPASEHSGDTSDTVKELGISS 1559

Query: 1619 QSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEI 1678
            Q + S+AA +R+ +S  EP+L TRDALDKY IVAQKL+AL+ +D RE E+QG+I+EVPEI
Sbjct: 1560 QPISSSAASDRLVTSASEPTLNTRDALDKYQIVAQKLEALVSSDGREVEIQGLITEVPEI 1619

Query: 1679 ILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYS 1738
            ILRC+SRDEAALAVAQKVFKGLYENASNN H +A LAILAAIRDVCKLVVKELTSWVIYS
Sbjct: 1620 ILRCVSRDEAALAVAQKVFKGLYENASNNFHVNACLAILAAIRDVCKLVVKELTSWVIYS 1679

Query: 1739 DEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV 1798
            DEERKFN+DIT+GLIRSELLNLAEYNVHMAKLIDGGRNK ATEF+ISL+Q LV +ES+V 
Sbjct: 1680 DEERKFNKDITVGLIRSELLNLAEYNVHMAKLIDGGRNKGATEFSISLIQALVVEESKV- 1738

Query: 1799 ISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKA 1858
            ISELHNLVDALAKLAAKPGS ESLQQLIEIVRNP AN+   SG T  K+DK+RQS+DKK 
Sbjct: 1739 ISELHNLVDALAKLAAKPGSSESLQQLIEIVRNPVANSAVISGFTVGKEDKSRQSRDKK- 1797

Query: 1859 YSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNG 1918
                                       VS+LFAEW++IC+LPG+NDAA T Y+LQLHQNG
Sbjct: 1798 ---------------------------VSLLFAEWFRICDLPGANDAASTHYILQLHQNG 1830

Query: 1919 LLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK 1978
            LLKGDDMTDRFFR +TE+SVAHCLSSEVIN G LQSPQQ Q+LSFLAIDIYAKL+ SILK
Sbjct: 1831 LLKGDDMTDRFFRIITELSVAHCLSSEVINSGALQSPQQGQNLSFLAIDIYAKLVFSILK 1890

Query: 1979 CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVAD 2038
               VEQGS++ FLLSKIL VTV+FI KD+EEKK SFNPRPYFRLF+NWLLD+ S DP+ D
Sbjct: 1891 ---VEQGSNRFFLLSKILAVTVRFIQKDSEEKKLSFNPRPYFRLFVNWLLDLVSPDPIID 1947

Query: 2039 GSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVN 2098
            G+N QIL+AFANAFH LQPLKVPAFSFAWLELVSHRSFMPKLL GN QKGWPY+QRLLV+
Sbjct: 1948 GTNLQILTAFANAFHNLQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYVQRLLVD 2007

Query: 2099 LLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRN 2158
            L QFLEPFLR+AELG+PV FLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRN
Sbjct: 2008 LFQFLEPFLRSAELGMPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRN 2067

Query: 2159 IILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQP 2218
            IILSAFPRNMRLPDPSTPNLKIDLLPEIR+ P I SEVDAAL+AKQM+ADVD+YLKT   
Sbjct: 2068 IILSAFPRNMRLPDPSTPNLKIDLLPEIREAPHILSEVDAALKAKQMKADVDEYLKTRHQ 2127

Query: 2219 GSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNS 2278
            GSSFLSELKQ+LLL PSEAASAGTRYNVPLINSLVLY GMQAI QLQ R  H+QS+GN +
Sbjct: 2128 GSSFLSELKQRLLLSPSEAASAGTRYNVPLINSLVLYAGMQAIQQLQARAPHSQSSGNTA 2187

Query: 2279 SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQ 2338
             L   LV AALDI+QTLI +LDTEGRYLFLNA ANQLRYPNNHTHYFSFVLLYL+AE+NQ
Sbjct: 2188 PLAVLLVDAALDIYQTLIVELDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAESNQ 2247

Query: 2339 EIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVA 2398
            EIIQEQITRVL ERLIVNRPHPWGLLITFIELIKNPRYNFWN+SFIRCAPEIEKLFESVA
Sbjct: 2248 EIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVA 2307

Query: 2399 RSCGGLKPVDDSMVSGWVPDNTH 2421
            RSCGGLKP+D+SMVSGWV + TH
Sbjct: 2308 RSCGGLKPMDESMVSGWVSEGTH 2330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449433000\|ref\|XP_004134286.1\| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356523091\|ref\|XP_003530175.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357512789\|ref\|XP_003626683.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520705\|gb\|AET01159.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356504613\|ref\|XP_003521090.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357512787\|ref\|XP_003626682.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520704\|gb\|AET01158.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297734545\|emb\|CBI16596.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359489261\|ref\|XP_003633901.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297842912\|ref\|XP_002889337.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata] gi\|297335179\|gb\|EFH65596.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334182230\|ref\|NP_001184889.1\| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana] gi\|332189257\|gb\|AEE27378.1\| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2421
ZFIN\|ZDB-GENE-040915-1		2375	cnot1 "CCR4-NOT transcription	0.303	0.309	0.423	2.3e-309
MGI\|MGI:2442402		2375	Cnot1 "CCR4-NOT transcription	0.214	0.218	0.514	6.9e-303
UNIPROTKB\|G3V7M0		2376	Cnot1 "RCG39079" [Rattus norve	0.214	0.218	0.514	6.9e-303
UNIPROTKB\|F1MHU9		2371	CNOT1 "Uncharacterized protein	0.214	0.218	0.514	1.1e-302
UNIPROTKB\|A5YKK6		2376	CNOT1 "CCR4-NOT transcription	0.214	0.218	0.514	1.1e-302
UNIPROTKB\|F1RFU3		2375	CNOT1 "Uncharacterized protein	0.214	0.218	0.514	1.4e-302
DICTYBASE\|DDB_G0276029		2526	DDB_G0276029 "putative CCR4-NO	0.165	0.158	0.585	1.6e-302
UNIPROTKB\|E1BXD4		2129	LOC100858397 "Uncharacterized	0.214	0.243	0.516	1.8e-296
FB\|FBgn0085436		2505	Not1 "Not1" [Drosophila melano	0.325	0.314	0.393	5.7e-271
WB\|WBGene00002845		2641	let-711 [Caenorhabditis elegan	0.268	0.245	0.365	4.5e-194

ZFIN\|ZDB-GENE-040915-1 cnot1 "CCR4-NOT transcription complex, subunit 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1400 (497.9 bits), Expect = 2.3e-309, Sum P(5) = 2.3e-309
 Identities = 327/773 (42%), Positives = 451/773 (58%)

Query:  1653 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASNNLHFS 1711
             Q L A+    A   + Q + S +  +++   SRD  AAL + QK  +GL +  S      
Sbjct:  1621 QHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSG----- 1675

Query:  1712 AHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLI 1771
             A   +L + R+   LV+K L     Y  +    N+ IT  LI  E  +  +YNV   +L+
Sbjct:  1676 ADPELLLSYRECHLLVLKALQDGRAYGPQW--CNKQITRCLI--ECRDEYKYNVEAVELL 1731

Query:  1772 DGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALA--KLAAKPGSPESLQQLIE-I 1828
                      ++ + L Q++    + + ++    LV  L   + +    +   L   IE +
Sbjct:  1732 IRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETL 1791

Query:  1829 VRNPXXXXXXXXXXXXXKDDKARQSKDKKAYSHTTA-NREDYN-IPESVD-PDPVGFPEQ 1885
             +R                 D  R + +     H    N   ++ I ++ +  DP G  E+
Sbjct:  1792 MRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREK 1851

Query:  1886 VSMLFAEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTE--VSVAH 1940
                L  EW   Y        +  A + +V Q+HQ G+LK DD+  RFFR  TE  V +++
Sbjct:  1852 AEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISY 1911

Query:  1941 CLSSEVINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIFLLSKILTVT 1999
                +E  +P T           +  +D + +L+  ++K       + +KI LL+K+L + 
Sbjct:  1912 RAQAEQQHPTTSPAIIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIV 1969

Query:  2000 VKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLK 2059
             V  +++D + ++  F   PY R+FI  LL++++ + V +  NFQ L+AF N FH+L+P K
Sbjct:  1970 VGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTK 2029

Query:  2060 VPAFSFAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRNAELGVPVRF 2118
              P F +AWLEL+SHR F+ ++L    Q KGWP   +LL++L ++L PFLRN EL  P++ 
Sbjct:  2030 APGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQI 2089

Query:  2119 LYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNL 2178
             LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMRLPDP TPNL
Sbjct:  2090 LYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNL 2149

Query:  2179 KIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAA 2238
             K+D+L EI   PRI +     + + Q + D+D YLKT  P  +FLSEL+  L +    + 
Sbjct:  2150 KVDMLSEINIAPRILTNFTGVMPS-QFKKDLDSYLKTRSP-VTFLSELRSNLQV----SN 2203

Query:  2239 SAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQD 2298
               G RYN+ LIN+LVLYVG QAI       +H  + G+  S++    SA +DIFQ L  D
Sbjct:  2204 EPGNRYNIQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHMDIFQNLAVD 2256

Query:  2299 LDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRP 2358
             LDTEGRYLFLNA ANQLRYPN+HTHYFS  +LYL+AEAN E IQEQITRVL ERLIVNRP
Sbjct:  2257 LDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRP 2316

Query:  2359 HPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 2411
             HPWGLLITFIELIKNP + FW+  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct:  2317 HPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2369

GO:0005575 "cellular_component" evidence=ND

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

MGI\|MGI:2442402 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V7M0 Cnot1 "RCG39079" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MHU9 CNOT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|A5YKK6 CNOT1 "CCR4-NOT transcription complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RFU3 CNOT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276029 DDB_G0276029 "putative CCR4-NOT complex subunit 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXD4 LOC100858397 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0085436 Not1 "Not1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00002845 let-711 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		2421
pfam04054		375	pfam04054, Not1, CCR4-Not complex component, Not1	1e-180
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	2e-87
pfam12842		147	pfam12842, DUF3819, Domain of unknown function (DU	1e-63
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	3e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	6e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	2e-34

>gnl\|CDD\|217865 pfam04054, Not1, CCR4-Not complex component, Not1	Back alignment and domain information

 Score =  554 bits (1429), Expect = e-180
 Identities = 201/385 (52%), Positives = 258/385 (67%), Gaps = 19/385 (4%)

Query: 2025 NWLLDMSSLDPVADGSNF-QILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIG 2083
            + L +++ LD +       Q   AFA   H LQP+K P F FAWLEL+SHR F+P++L  
Sbjct: 1    SLLYELNRLDSLESKELDSQFYLAFAEYLHSLQPIKYPGFVFAWLELISHRMFLPRMLRL 60

Query: 2084 NGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHF 2143
              QKGWP   +LL++LL+FL+ FL+NA L   V+ LYKGTLR+LLVLLHDFPEFL +YH+
Sbjct: 61   PNQKGWPLYVKLLIDLLKFLDEFLKNANLSDAVKVLYKGTLRILLVLLHDFPEFLIEYHY 120

Query: 2144 TFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAK 2203
              CD IPP+CIQ+RN+ILSAFP+NM+LPDP TP LK+D LPEI++ P+I  +  A L++ 
Sbjct: 121  QLCDAIPPNCIQLRNLILSAFPKNMKLPDPFTPGLKVDRLPEIKEAPKILYDPVADLQSA 180

Query: 2204 QMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLYVGMQ 2259
             ++  VD+YL+   P  S L  +   L L   E          + NV LIN+LVL+VG+Q
Sbjct: 181  GLKKPVDNYLRIR-PSESLLRTICNGLYLSEDEQTVGIGYDPVKVNVKLINALVLHVGIQ 239

Query: 2260 AIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPN 2319
            A+               N++      S  + +   L  +LD EGRY  LNA ANQLRYPN
Sbjct: 240  AV-------LEILKKSQNANF--NTKSPHMALLSNLANELDPEGRYYLLNAIANQLRYPN 290

Query: 2320 NHTHYFSFVLLYLY----AEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPR 2375
            +HTHYFS V+L+L+     E+ +E IQEQITRVL ERLIVN+PHPWGLLITFIELIKNP 
Sbjct: 291  SHTHYFSCVILHLFGSDEWESQKEDIQEQITRVLLERLIVNKPHPWGLLITFIELIKNPD 350

Query: 2376 YNFWNQSFIRCAPEIEKLFESVARS 2400
            Y FW   FI+ APEIEKLF+S+ARS
Sbjct: 351  YKFWELPFIKSAPEIEKLFDSLARS 375

The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID. Length = 375

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819)	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		2421
COG5103		2005	CDC39 Cell division control protein, negative regu	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	100.0
PF04054		379	Not1: CCR4-Not complex component, Not1; InterPro:	100.0
PF12842		147	DUF3819: Domain of unknown function (DUF3819); Int	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	96.95
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	91.76
KOG1467		556	consensus Translation initiation factor 2B, delta	82.09
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	80.26

>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.6e-296  Score=2698.96  Aligned_cols=1918  Identities=27%  Similarity=0.401  Sum_probs=1495.8

Q ss_pred             CCcHHHHHHHHHhhhhhchHHHHHHHHHHHH-hccchhhHHHHhhhcccccCC-CCCCCch---HHHHHHHHHHHhhcCC
Q 000073            6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHLNLHG-TGLKNPQ---LESVVASVFKYIMDKP   80 (2421)
Q Consensus         6 ~~~~~qi~~Lv~~l~k~n~~~~~~el~qlv~-~G~ea~~~~L~~~l~~~~~~~-~~~k~~~---~~~Ll~~~~~~ll~kp   80 (2421)
                      +.+-+||.+|++.|++.|||+.-+||.|+++ ...+-.++++|.++.--.++- +.+|...   --++|-+||+.++.|-
T Consensus        25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~tGK~~~~~a~~~~LL~Elks~~~Kr  104 (2005)
T COG5103          25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKKR  104 (2005)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhccCcccchhHHHHHHHHHHHhhhhhh
Confidence            4577999999999999999999999999997 999999999999996443311 2355444   4578889999999865


Q ss_pred             CccchhhhhccCc--ccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhcC----CC--CCC
Q 000073           81 NFSTVFSQSVKIT--EINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCAN----PV--PMN  152 (2421)
Q Consensus        81 nf~T~lc~A~~~~--~~~~~fl~~ls~~L~Ls~~qev~~gLAL~~s~n~e~~~~g~~f~~~~l~el~~~----~~--~~~  152 (2421)
                      .     ..|+.+.  ++=++|-=+++            +||.++             .+++....+. |    |.  +++
T Consensus       105 ~-----sD~Is~~dsevFed~~FQ~s------------iGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~qqS~  153 (2005)
T COG5103         105 F-----SDAISGSDSEVFEDFHFQFS------------IGLTTS-------------LLKNTFQSLL-NQLSDPTQQQSI  153 (2005)
T ss_pred             h-----hhHhhcchhhhhcchhhhhh------------hhhhHH-------------HHHHHHHHHH-hhccchHhhhhc
Confidence            4     6666654  22223311222            344433             2222222222 1    11  111


Q ss_pred             CHHHHHHHHHHHhcccchhh-hHHHHHHHHhhhcCCCCCCccccCCCCCccccccccccccccccCCCCchHHHHHHhhc
Q 000073          153 SAEQIQNIIMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEK  231 (2421)
Q Consensus       153 s~e~lh~il~~l~~~~gls~-~~~~f~~~l~~~~p~~~~~~~l~Pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (2421)
                      .-+-+    -.|++  |-.. ...-|.+.+...--+                   +.+... +.+.++.+- +.+..+  
T Consensus       154 d~NDl----d~lr~--~~Tdydr~~f~q~i~~~Le~-------------------s~~~~~-~~~p~e~~~-~~l~~~--  204 (2005)
T COG5103         154 DKNDL----DLLRE--GTTDYDRKIFRQEIKDVLEK-------------------SDPLTA-LFGPREVDR-SFLDDA--  204 (2005)
T ss_pred             ccchH----HHHhc--CCchHHHHHHHHHhHHHHHc-------------------CCchhh-hcCcchhhH-HHHHHH--
Confidence            00000    01111  1110 011122211111000                   001010 000011100 011111  


Q ss_pred             cCcHHHHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCC
Q 000073          232 EMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWN  311 (2421)
Q Consensus       232 ~~~l~~~i~e~G~~~t~s~~~c~~~L~~~~~l~e~~va~~l~~mart~sgl~~~~~~~~~~~~~~~~~~~~~~~~~~~wn  311 (2421)
                                           ..++|+-.+.-.+.|||+.+-.|+.-                          ++.+.||
T Consensus       205 ---------------------l~~Il~P~~~~~~~dvar~il~~~~~--------------------------~D~~~w~  237 (2005)
T COG5103         205 ---------------------LQRILRPRREVVPEDVARAILFMADF--------------------------PDRGEWN  237 (2005)
T ss_pred             ---------------------HHHHhCCCccCCcchHHHHHhhhhhc--------------------------ccccccc
Confidence                                 23445534468889999984444422                          2256799


Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCccccccccCcccCchh-hHHHHHHHhhC
Q 000073          312 VDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVAS  389 (2421)
Q Consensus       312 ~~vlv~alk~~~p~~nW~~V~~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~fpi~~l~~~~W~N~~~-Qlsfl~~~l~~  389 (2421)
                      .-..+.+++..+..+||.+|+.+||.+.|.|+....+..++.+|-. +.+.+||.+.+|. .|||... |+++.-|..+.
T Consensus       238 ~v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi~s~  316 (2005)
T COG5103         238 LVAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHIESD  316 (2005)
T ss_pred             hHHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheeeeec
Confidence            9999999999999999999999999999999977666666555554 4567899999994 9999999 55555666677


Q ss_pred             CCcccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc-
Q 000073          390 PPEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI-  466 (2421)
Q Consensus       390 p~~~f~f~~-~~r~~v~~d~~~~~~~~~-~~~~~~W~sldl~e~L~~Lae~~~~~~v~~l~e~p~~~~pe~lllgl~~i-  466 (2421)
                      +...|+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++|   +...||++.+||..+ 
T Consensus       317 ~~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~  392 (2005)
T COG5103         317 EKRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCAAGLGFVQ  392 (2005)
T ss_pred             ccchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHHHHHHHhh
Confidence            677788754 344555544433333222 24789999999999994 33332222233466   789999999999654 


Q ss_pred             ----CcchhHHHHHHHHhhhHHHHcC-CCchHHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhhhHHHHhhcC
Q 000073          467 ----NTAYNLIQYEVSFAVFPMIIKS-TMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMI  541 (2421)
Q Consensus       467 ----~~~~~~l~~ell~~lf~~fl~~-~~~~~vi~~lW~~~~~~~~~~~~d~y~~d~~~l~rIldvaqelk~L~~lL~~~  541 (2421)
                          +-.||+.+.+.....+-+++.| .++++|+..+...+|+++++...-...+|...++|++|+.-|+|.|+.+.|..
T Consensus       393 ~~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~l  472 (2005)
T COG5103         393 PKFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLL  472 (2005)
T ss_pred             hhhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcC
Confidence                4579999999888887777755 58899999999999999999998778999999999999999999999999999


Q ss_pred             CchhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHH
Q 000073          542 PSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPV  616 (2421)
Q Consensus       542 pf~f~idLA~lAsrre~l~LekWL~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~~tv~~  616 (2421)
                      |..|++|+++|++.|+.++|..|+..++....+ +    |+...++||+.|+.......+.+   ..+-+  ++..|+-.
T Consensus       473 P~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f~~~tvie  547 (2005)
T COG5103         473 PPEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--FPLNTVIE  547 (2005)
T ss_pred             CHHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--eehhhHHH
Confidence            999999999999999999999999999987665 3    99999999999997543211110   11223  34455555


Q ss_pred             HHHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCC-CCC-----CCCCCChhhHHHHHHHHHHHHhccCCCHHHH
Q 000073          617 ILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEA-ADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAM  690 (2421)
Q Consensus       617 lL~~L~~~~~~~~s~~l~e~l~~v~~~~i~~~PrL~n~~~-~d~-----~~~~~~~~dIE~Ean~yfqkmYs~eisI~~i  690 (2421)
                      +|..+.....     +-.+.++.++..|++.||||++.+- +|+     .+.++++.|||+||.+|||+||+++++|+++
T Consensus       548 il~t~~~~V~-----q~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~  622 (2005)
T COG5103         548 ILGTFTKAVE-----QYIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESS  622 (2005)
T ss_pred             HHHHhHHHHH-----HHHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHH
Confidence            5554433221     1156778888899999999999874 444     3567899999999999999999999999999


Q ss_pred             HHHHHHhhcCCccccchhHHhHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCc
Q 000073          691 VQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSK  770 (2421)
Q Consensus       691 v~~L~r~K~S~~~rdqdiFaCMih~LFdEYrFf~~YP~~eL~~TAvLFG~lI~~~Lv~~~~L~iALr~VLeAlr~p~~Sk  770 (2421)
                      |+.||+|++|++|||+|+|+|+.|.|||||+||++||+++|++|||||||||+++|+++.+|++|+|||..++++|++||
T Consensus       623 I~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~sk  702 (2005)
T COG5103         623 INQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSK  702 (2005)
T ss_pred             HHHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhccCCCCCCCCCCCcccccccccccCCCCCc
Q 000073          771 MFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEV  850 (2421)
Q Consensus       771 Mf~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~~~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~  850 (2421)
                      ||+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-++..    ..+.       .+               
T Consensus       703 mf~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~---------------  755 (2005)
T COG5103         703 MFSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV---------------  755 (2005)
T ss_pred             hHHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc---------------
Confidence            9999999999999999999999999999999965 8999998855542    1100       00               


Q ss_pred             cCCcccccccchhhhHHhhhhccccccccccccccCCCCCCCCcccCCCCCccCCCCCCchhhhhcccCCCccccccCCC
Q 000073          851 SGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSG  930 (2421)
Q Consensus       851 ~~~~~~~~~~q~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  930 (2421)
                                                 ++       ++++.|.   ++..                             .
T Consensus       756 ---------------------------Ek-------a~p~~pm---~pl~-----------------------------~  769 (2005)
T COG5103         756 ---------------------------EK-------ANPTHPM---LPLE-----------------------------D  769 (2005)
T ss_pred             ---------------------------cc-------cCCCCcc---cchh-----------------------------h
Confidence                                       00       0111111   1000                             0


Q ss_pred             ccCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHH
Q 000073          931 FARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMV 1010 (2421)
Q Consensus       931 ~~~p~~~~~~~~~~~~~nI~tL~~~~e~~~~~~e~Ppe~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV 1010 (2421)
                      |++-                     .-+-+...|--++|+..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||
T Consensus       770 fv~~---------------------~v~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~v  828 (2005)
T COG5103         770 FVRL---------------------IVKCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMV  828 (2005)
T ss_pred             hhee---------------------EeccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEE
Confidence            0000                     0000122344567788889999999999999999999999999999999999999


Q ss_pred             hhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCC
Q 000073         1011 MKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREI 1090 (2421)
Q Consensus      1011 ~kRasiEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~l 1090 (2421)
                      .+|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+...-  +.+|+++|||||+|||+|||||||||+|+++
T Consensus       829 tqR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~  906 (2005)
T COG5103         829 TQRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQF  906 (2005)
T ss_pred             EeeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCccccccc
Confidence            99999999999999999999999999999999999999999997644  8899999999999999999999999999999


Q ss_pred             ChhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCcccc
Q 000073         1091 DPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDI 1170 (2421)
Q Consensus      1091 d~K~LLlEaY~~g~Li~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~lL~Ely~~~~LKLnLKFEIEVL~K~L~ldl~di 1170 (2421)
                      |||++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++||+||||||+|+|+||++++.|
T Consensus       907 ~Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~i  986 (2005)
T COG5103         907 DFKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPI  986 (2005)
T ss_pred             cHHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccchhh---ccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCcC
Q 000073         1171 TPTSLLKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSG 1247 (2421)
Q Consensus      1171 eps~~L~~r~~~---~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 1247 (2421)
                      ||++.++++...   ++.               .+||.      -++ .+.|.+          ..+++||.... .++.
T Consensus       987 kPs~~~~n~~V~ks~LEk---------------e~~Ed------vL~-a~~~d~----------~~~~~qyi~~~-sSq~ 1033 (2005)
T COG5103         987 KPSKSLGNHLVLKSRLEK---------------ELPED------VLN-AKFPDG----------TDYLAQYIIED-SSQI 1033 (2005)
T ss_pred             ChhhhhCcHHHHHHHHhh---------------hchHH------HHh-hhcccc----------chHHHHHHHHh-hhcc
Confidence            999999876531   110               11110      000 001100          01233432100 0000


Q ss_pred             cchhHHHHhhccCCCCCCcccccccccCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhh
Q 000073         1248 TLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIV 1327 (2421)
Q Consensus      1248 ~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~rAIrEII 1327 (2421)
                       ..+|. ++.                                      +...|       -|.+|++.++|++.+||||+
T Consensus      1034 -TvtD~-va~--------------------------------------~~g~P-------~PaiK~~~Qlal~~SVrEI~ 1066 (2005)
T COG5103        1034 -TVTDL-VAR--------------------------------------HVGSP-------KPAIKNLTQLALDLSVREIC 1066 (2005)
T ss_pred             -hHHHH-HHH--------------------------------------HcCCC-------ChHHHHHHHHHHHHHHHHHH
Confidence             00110 111                                      01111       28999999999999999999


Q ss_pred             hhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 000073         1328 SGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQ 1407 (2421)
Q Consensus      1328 ~PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MVr~LAgSLAlVTckEPLr~si~~~Lr~ll~~~~~~~~~~E~ 1407 (2421)
                      +.|||||+.||++||+.|++||||||.|+.++..||++||++|||+||+|||+|||++.|.+++|++..++.+....+.+
T Consensus      1067 ~aVVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae 1146 (2005)
T COG5103        1067 GAVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAE 1146 (2005)
T ss_pred             HHHHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998887766677888


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcCcccccccccCCCCCCCCCCCCCChhH
Q 000073         1408 AVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQ 1486 (2421)
Q Consensus      1408 ~i~~~vnDNldLac~iIEKaA~EKAi~eIde~l~~~~~~RR~hre~-~~~~f~D~~~~~~~~~~lPe~LrlkpgGl~~~Q 1486 (2421)
                      ++..++++|++.||.+||+|+++|++++|+..|+.++..|||||++ ++.||+||+. +..+++||++|+++-||+||+|
T Consensus      1147 ~vd~~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqq 1225 (2005)
T COG5103        1147 KVDKIAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQ 1225 (2005)
T ss_pred             HHHHHHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHH
Confidence            8999999999999999999999999999999999999999999997 7899999996 5557899999999999999999


Q ss_pred             HHHhHhhhcCcCCcCCCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCcccccCCccccCCCcccCccc
Q 000073         1487 QRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAG 1566 (2421)
Q Consensus      1487 ~~VYEdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 1566 (2421)
                      +++||||.|+|-..-   .+|.+.++.-+          -...+++         ++++   +  |.++.      +..+
T Consensus      1226 f~lyE~fD~l~ls~i---~~h~~~~~~n~----------~~Td~ad---------stda---l--~~nl~------nt~e 1272 (2005)
T COG5103        1226 FSLYEDFDRLSLSTI---MGHIEKIAINA----------IDTDSAD---------STDA---L--NNNLN------NTVE 1272 (2005)
T ss_pred             hhhhhcccccccccc---ccccchhhhhh----------hcCChhh---------hhhh---h--ccccc------hhhh
Confidence            999999999763221   22222211100          0000000         0000   0  00000      0000


Q ss_pred             cccccc-ccccCCCCCcccccccccccccCChhhhhhcccCCCCCCCCCCCCCCCCCCCchhhhccccccccccchhhhH
Q 000073         1567 FLSTSL-VHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDAL 1645 (2421)
Q Consensus      1567 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 1645 (2421)
                      .-..|+ +++.. .           ... . +.+  ..+.            ..++|.. .+..+.         .    
T Consensus      1273 ~eAnQta~~yq~-n-----------~L~-i-~~q--l~Ql------------~~~~Py~-~~~~V~---------a---- 1310 (2005)
T COG5103        1273 NEANQTALEYQE-N-----------LLI-I-KAQ--LVQL------------SKKIPYS-SKKNVI---------A---- 1310 (2005)
T ss_pred             hHHHHHHHHHHH-H-----------hhh-h-hhH--HHHh------------cccCCcc-hhhcCc---------c----
Confidence            000000 01000 0           000 0 000  0000            0011111 011111         0    


Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhH
Q 000073         1646 DKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCK 1725 (2421)
Q Consensus      1646 ~~~~~~~~~l~~l~~~~~~~~~i~~~i~~v~~~i~~~~~rd~~al~~aqki~~~L~~~~~~~l~~e~~~~~L~~L~~~~~ 1725 (2421)
                      +..|-.   +.+     +. +++..++.+|...|.++   |+.++.++|.+++.|+..+.+++++||+.++||+||++|-
T Consensus      1311 D~e~~~---lkE-----~~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~ 1378 (2005)
T COG5103        1311 DEEHGL---LKE-----GK-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISF 1378 (2005)
T ss_pred             hhhhhH---HHh-----hH-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhH
Confidence            111111   111     11 35667777777777655   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccccccCHHHHHHHHHhCCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCchh-hHhhHHH
Q 000073         1726 LVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRV-VISELHN 1804 (2421)
Q Consensus      1726 ~~~kevt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~~~~~-~~~df~~ 1804 (2421)
                      +++|+|.||++|+.|.||||+|+|.+||++||||..|||.+|++.|.+.. +.++|||+.|++.++.+|.++ +..||.+
T Consensus      1379 kt~k~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~ 1457 (2005)
T COG5103        1379 KTQKEVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFIC 1457 (2005)
T ss_pred             HHhhhhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHH
Confidence            99999999999999999999999999999999999999999999997543 458999999999888877665 4599999


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCccCCCCCCCCCCCCCChHH
Q 000073         1805 LVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPE 1884 (2421)
Q Consensus      1805 tleaL~~~~~~~~~~~~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e 1884 (2421)
                      |+|.|+.-.    + +.++++.+++.+...                     ..+..|                ....+.|
T Consensus      1458 tLe~la~s~----d-~~vk~f~~~~~~tm~---------------------~~v~kg----------------nKqq~nd 1495 (2005)
T COG5103        1458 TLEMLAGSS----D-PKVKDFFQKISNTMM---------------------HIVAKG----------------NKQQLND 1495 (2005)
T ss_pred             HHHHHhccC----C-hhHHHHHHHHHHhhh---------------------hccccc----------------ccccccc
Confidence            999885432    2 445777766643100                     000011                1235679


Q ss_pred             HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccch
Q 000073         1885 QVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFL 1964 (2421)
Q Consensus      1885 q~~~lF~EWv~l~~~~~~~~~~~~~Fi~qL~~~giL~~~d~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f~ 1964 (2421)
                      |+..+|.|||++.++...+|..-..|+.||+++|+++..|+...|||+.+|.+|..|.+..            +.+.+|.
T Consensus      1496 qi~iVf~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------pta~~y~ 1563 (2005)
T COG5103        1496 QIIIVFSEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------PTAYCYL 1563 (2005)
T ss_pred             eEEEeeHHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------Cccccee
Confidence            9999999999999999999999999999999999999999999999999999999997432            2479999


Q ss_pred             hhhHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHHH
Q 000073         1965 AIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQI 2044 (2421)
Q Consensus      1965 ~iDA~akLi~~lvk~~~~~~~~~k~~~L~kiL~ivv~Vl~~dhe~~~~~FnQrpyfRlfs~LL~el~~~d~~l~~~~~~i 2044 (2421)
                      .||||+.||+.++++. +..+.++..|++||++++++|+.++|..+++.||+|+||||||++|+||.......++.-..+
T Consensus      1564 ~IDal~sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~ 1642 (2005)
T COG5103        1564 KIDALPSLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNN 1642 (2005)
T ss_pred             eccchHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhh
Confidence            9999999999999996 444567889999999999999999999999999999999999999999987554444555678


Q ss_pred             HHHHHHHhhhcCCCCCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHHHhHH
Q 000073         2045 LSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTL 2124 (2421)
Q Consensus      2045 l~~fa~~l~~LqP~~~PgF~FaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~Ll~Fl~~~L~~~~ls~~i~~lYkGtL 2124 (2421)
                      .+.|-++|..|||.+||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||+.  ++...+...++++|+|+|
T Consensus      1643 ~Sv~y~~f~alqP~~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gfl 1720 (2005)
T COG5103        1643 RSVVYSIFEALQPSRFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGFL 1720 (2005)
T ss_pred             HHHHHHHHHHcCcccCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcch
Confidence            889999999999999999999999999999999999999999999999999999999998  788888899999999999


Q ss_pred             HHHHHHHhcchhHHHHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHhh
Q 000073         2125 RVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQ 2204 (2421)
Q Consensus      2125 RilLvLlHDfPeFL~~yh~~lc~~IP~~ciQLRNlILSA~P~~mrLPDPftp~Lkvd~LpEi~~~P~I~~d~~~~L~~~~ 2204 (2421)
                      |+.||++||||-||+++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|+...|  .+
T Consensus      1721 r~iLv~~hD~P~FLit~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~l--e~ 1798 (2005)
T COG5103        1721 RTILVYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPL--EG 1798 (2005)
T ss_pred             heeeeeeccCchHHHHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhcccccch--hh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998887  47


Q ss_pred             hhHHHHHHhccCCCCcchHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchh
Q 000073         2205 MRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLT 2281 (2421)
Q Consensus      2205 lk~~vD~yL~~r~~~~~~l~~l~~~L~~~~~~~~~~G~~---yN~~liNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~ 2281 (2421)
                      +++.+|  |  |.+.++.+..+.+++...-+.....|..   ++-..+-++|.|+|+.++....     +          
T Consensus      1799 ~~s~~d--L--e~~~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~~-----~---------- 1859 (2005)
T COG5103        1799 QNSFFD--L--EACLRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFMI-----E---------- 1859 (2005)
T ss_pred             cccchh--h--HHHhhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHHH-----H----------
Confidence            888888  6  5666677777777665544333233322   2456788999999999865311     1          


Q ss_pred             hhh-hhHHHHHHHHHHhccChhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHhhccc----chhhHHHHHHHHHHHhccC
Q 000073         2282 AFL-VSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QEIIQEQITRVLFERLIVN 2356 (2421)
Q Consensus      2282 ~f~-~s~~~~il~~L~~~ld~EgRY~ll~aiaNQLRYPNsHT~yFS~~lL~LF~~~~----~~~IqEqItRVLLERLIv~ 2356 (2421)
                      .|+ +|+.+.++..++..+++|.||+++.||+|||||||+||+||||++|++|.+++    +-.||||||||||||+|||
T Consensus      1860 ~f~~ks~~~t~l~~~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lLeRII~N 1939 (2005)
T COG5103        1860 RFMHKSEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIICN 1939 (2005)
T ss_pred             HHhccccHHHHHHHHHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHcC
Confidence            233 35589999999999999999999999999999999999999999999998763    4579999999999999999


Q ss_pred             CCCchHHHHHHHHHhhCCCCcccccCcCcchHHHHHHHHHHHHhcCCCCCCC
Q 000073         2357 RPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVD 2408 (2421)
Q Consensus      2357 rPHPWGLlITFiELikNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~ 2408 (2421)
                      |||||||+|||+||+||.+||||+||||+..|||.++|+++.+++|.+..+.
T Consensus      1940 rPH~WGl~i~FTeLlkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~a~ssan 1991 (2005)
T COG5103        1940 RPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSAN 1991 (2005)
T ss_pred             CCCcchhheeHHHHhcccccchhcCcccccCHHHHHHHHHHHHHhhCccccc
Confidence            9999999999999999999999999999999999999999999999775544

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human	Back alignment and domain information

>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human	Back alignment and domain information

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		2421
4gml_A		235	Crystal Structure Of Human Not1 Mif4g Domain Length		7e-58
4gmj_A		229	Structure Of Human Not1 Mif4g Domain Co-Crystallize		7e-58
4b89_A		249	Mif4g Domain Of The Yeast Not1 Length = 249		8e-37
4b8b_A		603	N-Terminal Domain Of The Yeast Not1 Length = 603		4e-24

>pdb|4GML|A Chain A, Crystal Structure Of Human Not1 Mif4g Domain Length = 235

Back alignment and structure

Iteration: 1

Score = 223 bits (569), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 104/214 (48%), Positives = 154/214 (71%), Gaps = 2/214 (0%) Query: 970 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 1029 +Q+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIEPNFH LY FLD Sbjct: 13 IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLD 72 Query: 1030 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 1089 + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +T+ +N+ + + Sbjct: 73 TLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTD 132 Query: 1090 IDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPN 1147 +D KSL++EAY KG ++ V+PF +K+LE S+ ++PPNPWTMAI+ +LAE++ + Sbjct: 133 LDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHD 192 Query: 1148 LKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181 LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R Sbjct: 193 LKLNLKFEIEVLCKNLALDINELKPGNLLKDKDR 226

PyMOL of 4gml

>pdb|4GMJ|A Chain A, Structure Of Human Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 229

Back alignment and structure

>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1 Length = 249

Back alignment and structure

>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1 Length = 603

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		2421
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 90.7 bits (224), Expect = 5e-18
 Identities = 109/668 (16%), Positives = 206/668 (30%), Gaps = 220/668 (32%)

Query: 5   SSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQ 64
           S    S    L  +L     + V +    F+E  +  +   L   M  +    T  + P 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYKFL---MSPIK---TEQRQPS 106

Query: 65  LESVVASVFKYIMDKP-NFSTVFSQ-SV----KITEINEQLLENLSDVLNLSLPERIGIG 118
           + + +   +    D+  N + VF++ +V       ++ + LLE L    N+ +   +G G
Sbjct: 107 MMTRM---YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSG 162

Query: 119 ---LALS--DSENLDALMCGKNF------------CMAQIERLCANPVPMNSAEQIQNII 161
              +AL    S  +   M  K F             +  +++L     P  ++       
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------ 216

Query: 162 MFLQRSSDLSKHVDSLMQILS-LLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDD 220
                SS++   + S+   L  LL+SK +   +L  VL   + +A +    +L       
Sbjct: 217 --SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VL-LNVQNAKAWNAFNL------- 264

Query: 221 DFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLT--EITLSRILGAIART 278
                                           CK IL     LT     ++  L A   T
Sbjct: 265 -------------------------------SCK-IL-----LTTRFKQVTDFLSAATTT 287

Query: 279 HAGLEDNQNTFST------FTLALGCSTMSDLP-------PLSSWNVDVLVKAIKQLAPN 325
           H  L+ +  T +           L C    DLP       P     + ++ ++I+     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRR---LSIIAESIRD-GLA 342

Query: 326 T--NWIRV------------VENLDYEGFYIPTE-----EAFSFFM-SVYKYACQEPFPL 365
           T  NW  V            +  L+      P E     +  S F  S          P 
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVFPPSA-------HIPT 389

Query: 366 HAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLC 425
             +   +W +                +V    +   +         L ++          
Sbjct: 390 ILLS-LIWFDVIKS------------DVMVVVNKLHKY-------SL-VEKQPKESTISI 428

Query: 426 LDL-LDVLCQLSEMG--HASFARSMLE-Y--PLKQCPEMLLLGMA------HINTAYNLI 473
             + L++  +L      H    RS+++ Y  P     + L+          HI   ++L 
Sbjct: 429 PSIYLELKVKLENEYALH----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLK 482

Query: 474 QYEVS--FAVFPMI----------IKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCT 521
             E      +F M+          I+   +       W+     +L      +  +P   
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTA------WNA-SGSILNTLQQLKFYKP--- 532

Query: 522 IRILEICQEL-KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEEC 580
             I +   +  ++++++L+     F  ++       +  DL   L I L    +  FEE 
Sbjct: 533 -YICDNDPKYERLVNAILD-----FLPKIEENLICSKYTDL---LRIALMAEDEAIFEEA 583

Query: 581 LKFVKEVQ 588
               K+VQ
Sbjct: 584 H---KQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		2421
4gmj_A		229	CCR4-NOT transcription complex subunit 1; mRNA dec	100.0
4b89_A		249	General negative regulator of transcription subun;	100.0
4b8b_A		603	General negative regulator of transcription subun;	100.0

>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A	Back alignment and structure

Probab=100.00  E-value=3.6e-81  Score=710.81  Aligned_cols=217  Identities=48%  Similarity=0.862  Sum_probs=214.5

Q ss_pred             CChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHH
Q 000073          966 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY 1045 (2421)
Q Consensus       966 Ppe~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LYl~fLd~l~~~~L~~~Vl~eTy 1045 (2421)
                      ++|+|||||+|||||+|++|+++|++|+|++|+++|++|||+|||++|||+|||||+||++|+++++++.|+++|+++||
T Consensus         3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~   82 (229)
T 4gmj_A            3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY   82 (229)
T ss_dssp             SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCc--eEEEechhhhcccccCCCc
Q 000073         1046 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSL 1123 (2421)
Q Consensus      1046 ~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LLlEaY~~g~--Li~VIPFVcKVLe~~~~Sk 1123 (2421)
                      ++|++||+|++++++++||++|||||+|||+|||||||||+||+||+|+||+|||++|.  |++|||||||||++|++|+
T Consensus        83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~  162 (229)
T 4gmj_A           83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV  162 (229)
T ss_dssp             HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred             HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999995  9999999999999999999


Q ss_pred             cccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccccccchhh
Q 000073         1124 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRE 1182 (2421)
Q Consensus      1124 VFkPPNPWtm~IL~lL~Ely~~~~LKLnLKFEIEVL~K~L~ldl~dieps~~L~~r~~~ 1182 (2421)
                      |||||||||||||++|+|||++||||+|||||||||||+|++|++||+|+++|++|++.
T Consensus       163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~  221 (229)
T 4gmj_A          163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRL  221 (229)
T ss_dssp             TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTG
T ss_pred             cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999874

PyMOL of 4gmj

>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B	Back alignment and structure

>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00