Citrus Sinensis ID: 000080
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2389 | 2.2.26 [Sep-21-2011] | |||||||
| Q6PNC0 | 3013 | DmX-like protein 1 OS=Mus | yes | no | 0.112 | 0.089 | 0.325 | 2e-36 | |
| Q8TDJ6 | 3036 | DmX-like protein 2 OS=Hom | yes | no | 0.143 | 0.112 | 0.305 | 3e-36 | |
| Q9Y485 | 3027 | DmX-like protein 1 OS=Hom | no | no | 0.146 | 0.115 | 0.282 | 2e-35 | |
| Q8BPN8 | 3032 | DmX-like protein 2 OS=Mus | no | no | 0.112 | 0.088 | 0.332 | 4e-35 | |
| P47104 | 1357 | Regulator of V-ATPase in | yes | no | 0.111 | 0.196 | 0.294 | 8e-29 | |
| Q9Y817 | 1297 | Regulator of V-ATPase in | yes | no | 0.105 | 0.194 | 0.280 | 5e-24 |
| >sp|Q6PNC0|DMXL1_MOUSE DmX-like protein 1 OS=Mus musculus GN=Dmxl1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 153/301 (50%), Gaps = 32/301 (10%)
Query: 1134 LAGVTDAEKMEILAVVDLLNEF-----DNKHSASVYENLDEPGQRFWVELRFQLLCFFRR 1188
L G+T E+M ++A+ D + +++ E LDE G +F + +R
Sbjct: 1496 LPGLTRMEQMSLMALADTIATTSTDIGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSL 1555
Query: 1189 FGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP----NEPTWPEMRALGVGFWYTDVT 1244
+ + AWAFHS +E L ++LP ++PTW E+RA+GVG+W +
Sbjct: 1556 PAYRAQLLHQGLSTGHFAWAFHSVAEEELL-NMLPAMQKDDPTWSELRAMGVGWWVRNAR 1614
Query: 1245 QLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ 1304
LR +EK+A+ + + DP D A+ Y+A+ + V+ GL++ KD K + F NF+
Sbjct: 1615 ILRRCIEKVAKAAFHRNNDPLDAAIFYLAMKKKAVIWGLYRSQKDTK---MTQFFGHNFE 1671
Query: 1305 EEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEK 1364
EE+ + AALKNA+ LLG+ + E + AFFLLGG A+ VC L D+QLALVI RL E
Sbjct: 1672 EERWRKAALKNAFSLLGKQRFEHSAAFFLLGGCLKDAIEVCLEKLNDIQLALVIARLFES 1731
Query: 1365 HGGPLERNLVTKFILPSSI----------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
+++ K IL + D +L S+ W L +YS + T+
Sbjct: 1732 E---FDKSATYKSILRKKVLGIGSPASELSSSSINAHHDPFLRSMAHWILEDYSAALETL 1788
Query: 1409 L 1409
+
Sbjct: 1789 I 1789
|
Mus musculus (taxid: 10090) |
| >sp|Q8TDJ6|DMXL2_HUMAN DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 185/400 (46%), Gaps = 58/400 (14%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKH--SASVYENLDEPGQRFWVELRFQLLCFFR 1187
L G+T E+M ++A+ D + E D S S + LDE G R+ + +R C
Sbjct: 1523 LPGLTRLEQMFLVALADTVATTSTELDESRDKSCSGRDTLDECGLRYLLAMRLHT-CLLT 1581
Query: 1188 RFGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1582 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1641
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
+ LR +EK+A+ + + D D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1642 INTLRRCIEKVAKASFQRNNDALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1698
Query: 1303 FQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E++ + AALKNA+ LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1699 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLY 1758
Query: 1363 EKHGGPLERNLVTKFILPSSI--------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
E E + IL I D +L SL W + +Y+++ T+
Sbjct: 1759 ESE---FETSSTYISILNQKILGCQKDGSGFSCKRLHPDPFLRSLAYWVMKDYTRALDTL 1815
Query: 1409 LGFQSTAVINNFAL---SSNSVAF-----------------MDPSIGLYCLMLANKNSMR 1448
L Q+ + + S N VAF P L L L + +
Sbjct: 1816 LE-QTPKEDDEHQVIIKSCNPVAFSFYNYLRTHPLLIRRNLASPEGTLATLGLKTEKNFV 1874
Query: 1449 NAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSP 1488
+ I ++ R A A + G P+ AL+ LS P
Sbjct: 1875 DKIN-----LIERKLFFTTANAHFKVGCPVLALEVLSKIP 1909
|
May serve as a scaffold protein for MADD and RAB3GA on synaptic vesicles. Homo sapiens (taxid: 9606) |
| >sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 184/403 (45%), Gaps = 54/403 (13%)
Query: 1134 LAGVTDAEKMEILAVVDLLNEF-----DNKHSASVYENLDEPGQRFWVELRFQLLCFFRR 1188
L G++ E+M ++A+ D + +++ + E LDE G +F + +R
Sbjct: 1498 LPGLSRMEQMSLMALADTIATTSTDIGESRDRSQGGETLDECGLKFLLAVRLHTFLTTSL 1557
Query: 1189 FGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP----NEPTWPEMRALGVGFWYTDVT 1244
+ + AWAFHS +E L ++LP ++PTW E+RA+GVG+W +
Sbjct: 1558 PAYRAQLLHQGLSTSHFAWAFHSVAEEELL-NMLPAMQKDDPTWSELRAMGVGWWVRNTR 1616
Query: 1245 QLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ 1304
LR +EK+A+ + +K DP D A+ Y+A+ + V+ GL++ EK+ + F NF+
Sbjct: 1617 ILRKCIEKVAKAAFYRKNDPLDAAIFYLAMKKKAVIWGLYRA---EKNTRMTQFFGHNFE 1673
Query: 1305 EEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEK 1364
+E+ + AALKNA+ LLG+ + E + AFFLL G A+ VC L D+QLALVI RL E
Sbjct: 1674 DERWRKAALKNAFSLLGKQRFEHSAAFFLLAGCLRDAIEVCLEKLNDIQLALVIARLYES 1733
Query: 1365 HGGPLERNLVTKFILPSSI----------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
+ + K IL + D +L S+ W L +YS + T+
Sbjct: 1734 E---FDTSAAYKSILRKKVLGIDSPVSELCSLNINMHHDPFLRSMAYWILEDYSGALETL 1790
Query: 1409 LGFQSTAVINNFALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNA-----AILG--- 1460
+ + +SN F Y + + +R G + ++ G
Sbjct: 1791 IKQPIRENDDQVLSASNPTVF-----NFYNYLRTHPLLLRRHFGSSDTFSTHMSLTGKSG 1845
Query: 1461 ---------RWAALMRATALNRCGLPLEALDCLSSSPSTIGGT 1494
R A+A + G P+ AL+ LS P I T
Sbjct: 1846 LAGTINLSERRLFFTTASAHLKAGCPMLALEVLSKMPKVIKKT 1888
|
Homo sapiens (taxid: 9606) |
| >sp|Q8BPN8|DMXL2_MOUSE DmX-like protein 2 OS=Mus musculus GN=Dmxl2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 152/301 (50%), Gaps = 32/301 (10%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKHSA--SVYENLDEPGQRFWVELRFQLLCFFR 1187
L G+T E+M ++A+ D + E D S + LDE G R+ + +R C
Sbjct: 1522 LPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLLAMRLHT-CLLT 1580
Query: 1188 RFGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1581 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1640
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
V LR +EK+A+ + + + D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1641 VNTLRRCIEKVAKAAFQRNNEALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1697
Query: 1303 FQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E++ + AALKNA+ LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1698 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLF 1757
Query: 1363 EKHGGPLERNLVTKFILPSSI--------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
E E + IL I D +L SL W + +Y+++ T+
Sbjct: 1758 ESE---FETSSTYISILNQKILGCQKDGTGFDCKRLHPDPFLRSLAYWVVKDYTRALDTL 1814
Query: 1409 L 1409
L
Sbjct: 1815 L 1815
|
May serve as a scaffold protein for MADD and RAB3GA on synaptic vesicles. Mus musculus (taxid: 10090) |
| >sp|P47104|RAV1_YEAST Regulator of V-ATPase in vacuolar membrane protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAV1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 141/278 (50%), Gaps = 12/278 (4%)
Query: 1203 RLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK-- 1260
R ++WA HS+ +E L SI + +W R + +W + L + E +A+ ++ K
Sbjct: 904 RDVSWALHSDNKEILLSSIDRHITSWNRAREYRIAYWIKE-QDLVKKFEDIAKYEFSKDD 962
Query: 1261 KKDPKDCALLYIALNRIQVLAGLFK--ISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYV 1318
K+DP CA+ Y+AL + Q+L L+K I E+ K +V F+S +F + + AALKNA+V
Sbjct: 963 KRDPSRCAIFYLALKKKQILLSLWKMAIGHPEQQK-MVRFISNDFTVPRWRTAALKNAFV 1021
Query: 1319 LLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFI 1378
LL +H+ A FFLL V V + + D+ LA+ +CR+ E GP+ L+T +
Sbjct: 1022 LLSKHRYMDAAVFFLLTDSLKDCVNVLCKQVHDMDLAIGVCRVYEGDNGPVLGELLTAQM 1081
Query: 1379 LPSSIERGDYWLTSLLEWELGNYSQSFLTMLGF-----QSTAVINNFALSSNSVAFMDPS 1433
LP +I+ D W S + W+L + +L ++++++ + S DP+
Sbjct: 1082 LPETIKENDRWKASFIYWKLRKQEVAIKALLTAPIDLENNSSIVDKEVCVNRSFLVEDPA 1141
Query: 1434 IGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATAL 1471
+ L N+N ++ IG N ++R T +
Sbjct: 1142 LLYLYNHLRNRN-LKYFIGSLNVEAKIECTLILRVTDI 1178
|
Component of the RAVE complex, which is required for stable assembly of the vacuolar APTase complex V-ATPase under many conditions. Required for transport between the early endosome and the late endosome/prevacuolar compartment (PVC), suggesting that assembly of vacuolar ATPase at the early endosome is required for transport from the early endosome to the PVC. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9Y817|RAV1_SCHPO Regulator of V-ATPase in vacuolar membrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rav1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 142/271 (52%), Gaps = 19/271 (7%)
Query: 1128 LQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFR 1187
L V ++ +T + + +L +++ N+ + ++ ++LD G+R+ + L +L +
Sbjct: 865 LLKVKKVKTLTRSSQFLLLNLIEAFNK-----ARALRDSLDLNGKRYCIMLNQYVLSKHQ 919
Query: 1188 RFGKLVSAEELAVDSRLIAWAFHSECQETLFGSI--LPNEPT-WPEMRALGVGFWYTDVT 1244
R + ++ +R +AWAFHS + L L +P W + + FW +
Sbjct: 920 R-------QLTSLPTREMAWAFHSSNKAVLLDHTKKLHGKPLLWNAVEEYAIPFWLNE-Q 971
Query: 1245 QLRTRMEKLARLQY--LKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKP-LVGFLSR 1301
L+ +L+R Y + ++P++ +L +IAL++I V L++++ K+ V LS
Sbjct: 972 LLKDVFLELSRNHYAEIDDRNPENVSLYHIALHKINVFRDLWRLASWHKESARTVKLLSN 1031
Query: 1302 NFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRL 1361
+F ++K K A KNA+ LL +H+ A AFFLL A VC RNL + LA+ + R+
Sbjct: 1032 DFSKKKWKVVASKNAFALLSKHRYFYASAFFLLADSCYDAAKVCIRNLKSISLAIAMTRV 1091
Query: 1362 VEKHGGPLERNLVTKFILPSSIERGDYWLTS 1392
E GP + L+ +++LP ++ + D WLT+
Sbjct: 1092 YEGDDGPTLKRLINEYVLPLAVSQNDRWLTN 1122
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2389 | ||||||
| 359489586 | 2572 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.908 | 0.601 | 0.0 | |
| 255564651 | 2299 | nucleotide binding protein, putative [Ri | 0.942 | 0.979 | 0.584 | 0.0 | |
| 224068002 | 2434 | predicted protein [Populus trichocarpa] | 0.931 | 0.914 | 0.556 | 0.0 | |
| 449433024 | 2491 | PREDICTED: uncharacterized protein LOC10 | 0.957 | 0.918 | 0.527 | 0.0 | |
| 449478209 | 2419 | PREDICTED: uncharacterized LOC101204824 | 0.925 | 0.914 | 0.513 | 0.0 | |
| 334184951 | 2513 | transducin family protein / WD-40 repeat | 0.954 | 0.907 | 0.484 | 0.0 | |
| 4415937 | 2480 | hypothetical protein [Arabidopsis thalia | 0.943 | 0.909 | 0.481 | 0.0 | |
| 297828387 | 2458 | transducin family protein [Arabidopsis l | 0.939 | 0.912 | 0.482 | 0.0 | |
| 356560264 | 2369 | PREDICTED: uncharacterized protein LOC10 | 0.689 | 0.695 | 0.536 | 0.0 | |
| 356522498 | 2468 | PREDICTED: uncharacterized protein LOC10 | 0.687 | 0.665 | 0.534 | 0.0 |
| >gi|359489586|ref|XP_002264136.2| PREDICTED: uncharacterized protein LOC100255258 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2808 bits (7278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1437/2388 (60%), Positives = 1760/2388 (73%), Gaps = 51/2388 (2%)
Query: 10 LQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHF 69
+Q++ VD LPL F++S+ IP APT S +DWLPDFAG SWVAYGAS+LLVISHF
Sbjct: 23 MQDSITAVDLPGQLPLQFVKSDPIPPAPTPSQFAVDWLPDFAGLSWVAYGASTLLVISHF 82
Query: 70 PSPLSQEEALIGPIFRQVFALS-DNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSA 128
PSPLS EEALIGPIFRQV ++ D S V+ + WSP TPS+G+LA AS NC+ VF+HDS
Sbjct: 83 PSPLSSEEALIGPIFRQVVEIAADESAAVSVVGWSPATPSVGELAVASGNCVCVFSHDSE 142
Query: 129 SSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYP 188
++GSFCW Q A+LV TKVEAI+WTGSGDGI+AGG E VLWK K+ WEIAWKFK +P
Sbjct: 143 RAEGSFCWGQTAVLVHSTKVEAIKWTGSGDGIIAGGTEVVLWKNKSRSWEIAWKFKSEHP 202
Query: 189 QNLVSATWSIEGPSATAASMSQLDLLG---P-KEAGKCVFICCSDGKSEYIKLELCHPQP 244
Q VSATWSIEGP A+AA S+L + G P +A KCV +C +DG SEY+K EL HPQP
Sbjct: 203 QTFVSATWSIEGPLASAAYHSKLHIGGWFSPFNDASKCVLVCYNDGNSEYVKTELRHPQP 262
Query: 245 VSMVQWRPSTRRH-SPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTI 303
VSM+QWRPSTR+ S GD K RHVLLTCCLDGTVRLW E+D+G+ RK+ +TND KT+
Sbjct: 263 VSMIQWRPSTRQQQSKGDAKYPMRHVLLTCCLDGTVRLWSEIDNGRVRKIGTETNDQKTV 322
Query: 304 RRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCE 363
RRSF V A+IEINQ LNG LG ++ +TWA EI + +TGEGAN ST +EH GKCE
Sbjct: 323 RRSFRVAAVIEINQTLNGTLGTNVFVTWATEIAGIIKTGEGANQIFSTKHHEHEKAGKCE 382
Query: 364 WLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNL---ELEHPHNSGFSGFQGQSLL 420
WL+G+GPG +T WAIHCLDD SP+RFPRVTLWK+Q + E+ + HN+G S + QS+L
Sbjct: 383 WLIGFGPGMFLTFWAIHCLDDFSPVRFPRVTLWKRQEVQGAEIGNFHNTGNSNSEDQSVL 442
Query: 421 NKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSAS 480
NKVVI R+ + G P CSL+ L CNSL WS L+ Q +D S +K + ILSC +
Sbjct: 443 NKVVIMRNLLFGPPIACSLIQLLPCNSLCWSFLYTQAFNGTQDGSINKFTRENILSCCSG 502
Query: 481 RILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKL 540
L+I+GH+GKILQVAVHP + ELA SLDSNGLLL WSLSTISNCI L TL P+WKL
Sbjct: 503 ATLNIDGHSGKILQVAVHPYSCKVELAASLDSNGLLLLWSLSTISNCILGLSTLNPTWKL 562
Query: 541 CGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTI 600
CGK T+ S S YTSL WAPS+LDED +LLMGH GGID FIVK+SQ+E + ++C+ +CTI
Sbjct: 563 CGKFATQDSGSKYTSLHWAPSVLDEDCILLMGHAGGIDLFIVKVSQSEEEKVICYKLCTI 622
Query: 601 PFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSES 660
PFT HG +DGPAN+FS+PL S +KT NKFM L VW+K ++LSW IT HS DLS S
Sbjct: 623 PFTKHGPCQDGPANVFSIPLLSACNKTFSSNKFMFLAVWMKPFQALSWAITLHSCDLSGS 682
Query: 661 CCGCIDD-NNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLV 719
C GC D NT + +FE F G+KY + VNPCSSQFP+PH + VTS+AVVCP N +
Sbjct: 683 CFGCSSDIGNTAENEEMRFENIFSGRKYSVLVNPCSSQFPDPHIHDQVTSYAVVCPANSI 742
Query: 720 P-MQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGP 778
P +QQ V ND IP Y MATG SDG+L+LWRS S WELVGM VAHQGP
Sbjct: 743 PSLQQGQVSSNDLHIDIPAYHMATGCSDGTLKLWRSNSSRLSNPHFLWELVGMFVAHQGP 802
Query: 779 VSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWL 838
+SAISLTD G+KIAT+ A H + S +RIWESV +T GSFVLEDT+S D ++VA++WL
Sbjct: 803 ISAISLTDCGQKIATICMAGHLSTASTLRIWESVHLTGAGSFVLEDTVSVDGDVVALSWL 862
Query: 839 TLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-HDFTWG 897
L NGQ LLGVC+QNEL+VYAQR GGQ LL + SL++ WFC+A + TF + HDF WG
Sbjct: 863 ALGNGQLLLGVCMQNELQVYAQRRCGGQTLLSSGKSLELHIWFCMASARTFPSIHDFLWG 922
Query: 898 RRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFID--NFCCHKSGINENIVSTIFTV 955
+A A+V+H +Y ++ Q+L +D+K Q+ C+ +F +I+ST +
Sbjct: 923 PKATAVVIHSNYFCLFGQWLLSVDRKDQSNCHPECTKGSPDFKFEADKDVLSIISTDSGI 982
Query: 956 CDSES-SAGDQRGDYESAPSVNIDMKNDHL-----VASDQLKCG-GAILGSWSMLEIAEK 1008
D ++ S D G+ +S +NI+M HL A ++K G GA LG WS+LE+AEK
Sbjct: 983 LDFKALSMEDSTGECKSKLPININMTG-HLSSSLFAARTRMKYGSGAKLGFWSILEVAEK 1041
Query: 1009 LRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILL 1068
L GSLPVYHP+AL +NIYSGNWKRAY++++HLVE L S + E+R+ KSSHI+PQI L
Sbjct: 1042 LCGSLPVYHPEALLMNIYSGNWKRAYIALQHLVECLTSTHAPERRHSTAKSSHIIPQIHL 1101
Query: 1069 STYFEGLLSKGSTDNGFQWSGLNTFSTS-LQFR----QFAYNMDLDASNS---SSSTKSE 1120
S YFEG LSK STD GFQWS +T TS QF+ QF+YN + DA + SSSTKSE
Sbjct: 1102 SNYFEGHLSKASTDKGFQWSREDTLVTSSAQFQRGPIQFSYNSESDAPRNMFSSSSTKSE 1161
Query: 1121 LSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRF 1180
LS FVE L+ YELA +T +EKM+ILA++DLLNE +N HSAS Y +LDEPGQRFWV +RF
Sbjct: 1162 LSSFVEPLEKFYELAAITSSEKMQILAIIDLLNEVNNPHSASAYGSLDEPGQRFWVAVRF 1221
Query: 1181 QLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWY 1240
Q LCF RRFG+L S +EL VDS LIAWAFHS+CQE LFGSILPN+P+W EMR LGVGFW+
Sbjct: 1222 QQLCFARRFGRLASTDELVVDSGLIAWAFHSDCQENLFGSILPNDPSWQEMRTLGVGFWF 1281
Query: 1241 TDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLS 1300
T+ LRTRMEKLARLQYLK KDPKDC+LLYIALNR++VL GLFKISKDEKDKPLVGFLS
Sbjct: 1282 TNAQSLRTRMEKLARLQYLKNKDPKDCSLLYIALNRLKVLTGLFKISKDEKDKPLVGFLS 1341
Query: 1301 RNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICR 1360
RNFQEEKNKAAALKNAYVL+GRHQLELAIAFFLLGGD +SA+TVC +NLGD QLALVICR
Sbjct: 1342 RNFQEEKNKAAALKNAYVLMGRHQLELAIAFFLLGGDTSSAITVCTKNLGDEQLALVICR 1401
Query: 1361 LVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNF 1420
LVE HGGPLER+L++KFILPS+IE+GDYWL S++EWELGNY QSFL MLG+Q +VIN
Sbjct: 1402 LVEGHGGPLERHLISKFILPSAIEKGDYWLASIMEWELGNYFQSFLIMLGYQMDSVINKP 1461
Query: 1421 ALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEA 1480
ALSSN AF+DPSIG YCL LA KNSMRNA+GE+NAAILGRW LM ATAL R GLPLEA
Sbjct: 1462 ALSSNHAAFLDPSIGRYCLTLATKNSMRNAVGEQNAAILGRWGTLMMATALRRSGLPLEA 1521
Query: 1481 LDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDL 1540
L+ LSSS S +G DQ S+ N+G S IL IL PS + SSNWL D A +LES A+LDL
Sbjct: 1522 LELLSSSLSNLGAADQRSISNVGKSEILHGILYPSPSD-SSNWLSGDAAFYLESLARLDL 1580
Query: 1541 SLQYFSKLIRDHPSWPDLGFGRASKCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMD 1600
++QY SKL+R+HPS P+ AS ++E HQYE ++ FQ KLY L FEQ+FS+
Sbjct: 1581 AMQYLSKLMREHPSCPE---KVASGGCREYESHQYEISLEKFQHKLYGGLETFEQKFSLS 1637
Query: 1601 SSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAE 1660
SLI K+L L NN LLFIGYD+LH Y Q SQ++ DTV LY K LLKA E
Sbjct: 1638 GDSLINKVLVALSNNSLLFIGYDVLHRYKSQDHSQDR-IDTVHSSLLYSILPKQLLKATE 1696
Query: 1661 DISIFLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMR 1720
+ S SRFI A SITCS KS ++EN +A Y+ Q ++ SLWSLRA ++
Sbjct: 1697 EFSHLFSRFIVACSITCSQQKSCSTENDMSGATMCGCIDAGCYHLQDLMLSLWSLRAILK 1756
Query: 1721 TFSGSFPEELI-TPLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVD 1779
FS S +++I P+ LLDL EY ++F AW QR+ GL+ + +P+LITYT+GH +D
Sbjct: 1757 IFSVSCTDDVIKKPIILLDLIEYCLYFVCAWFQRNLNGLILMARPLLITYTDGHASCNID 1816
Query: 1780 MNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLW 1839
M NLK HQ +E + N+ ID++ QV+K++ D +S D++ S+PEDER +I+G C+W
Sbjct: 1817 MENLKKALHQISESVDLNSLIDDVGVCQQVAKWMQDAQSGDILPSMPEDERQKILGVCIW 1876
Query: 1840 QHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQMRLLTLFLA 1899
H+S M + LNS+ G SSW SS T E L E+++L+ L
Sbjct: 1877 HHISSSMINLLNSL--------------GDTSSWASSSTCCEPDGNSLMEKIKLVPLIFM 1922
Query: 1900 QLLKSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSM 1959
+ LK+ + +ISS+H KQLA FL K+E+G +PT WL++++ SQ ++ ++LNQ +++
Sbjct: 1923 KFLKTTVTYISSYHAKQLASFLLQKIEDGLHVPTLEWLEKSSQSQPRSIQKNLNQ-GINL 1981
Query: 1960 NIINNKDEAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHE 2019
NI+N +D+++ SE++ D+ +DP II E F QEK+NW Y+N K KGW I +G+ +HE
Sbjct: 1982 NIMNIEDKSSASEVIRDIFADPKIISESFVQEKINWSQYVNGKPFKGWGDIYKGIMREHE 2041
Query: 2020 IKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKR 2079
+T + + S AS GS + LFR++ T S KD A + IPFQ PKEI KR
Sbjct: 2042 SAETSDQDGRHMSNSASSGTGSPVRSLFRSTHTFLGSGQKDTIFAKDDIPFQNPKEIFKR 2101
Query: 2080 NGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSE 2139
NGEL EAL +NS+ Q Q +A ++KGI+FFN EDE+P DQ +YIW++ADWPQNGWAGSE
Sbjct: 2102 NGELLEALRINSVHQGQAVLAGHKKGIIFFNWEDELPFRDQSEYIWSEADWPQNGWAGSE 2161
Query: 2140 STPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASAL 2199
STPVPT VSPGVGLGS KGAHLGLGGATIGVGSLARPGRDLTGG AFGIPGYAG+GAS L
Sbjct: 2162 STPVPTPVSPGVGLGSKKGAHLGLGGATIGVGSLARPGRDLTGGGAFGIPGYAGMGASGL 2221
Query: 2200 GWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV 2259
GWETQDDFE++VDPPATVENISTRA SSHP RPFFL GSSNTHIYLWEFGKDKATATYGV
Sbjct: 2222 GWETQDDFEEFVDPPATVENISTRALSSHPSRPFFLAGSSNTHIYLWEFGKDKATATYGV 2281
Query: 2260 LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319
LPAANVPPPYALASISA+QFDH GHRFA+AALDGTVCTWQLEVGGRSN+RP ES LCF+
Sbjct: 2282 LPAANVPPPYALASISAVQFDHCGHRFATAALDGTVCTWQLEVGGRSNIRPTESSLCFNG 2341
Query: 2320 HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367
HA DV+Y+TSSGS+IAA+GHSSNG+NV++WDTLAPP++SRASI CHEG
Sbjct: 2342 HASDVTYVTSSGSIIAASGHSSNGVNVIIWDTLAPPSTSRASIMCHEG 2389
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564651|ref|XP_002523320.1| nucleotide binding protein, putative [Ricinus communis] gi|223537408|gb|EEF39036.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2609 bits (6763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1366/2339 (58%), Positives = 1695/2339 (72%), Gaps = 88/2339 (3%)
Query: 1 MPEAESGCSLQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGA 60
MPEA S S ++P +HLPL+ + SE IP APTRS STIDWLPDF+GY+W+AYGA
Sbjct: 1 MPEASSSIS------TINPIDHLPLSIIGSEIIPPAPTRSESTIDWLPDFSGYAWIAYGA 54
Query: 61 SSLLVISHFPSPLSQEEALIGPIFRQVFALS-DNSLPVTSISWSPETPSIGQLAAASENC 119
SSLLVISH PSP+S +E LIGPI RQVF LS D+S VTS+SWS TPSIG+LAAAS NC
Sbjct: 55 SSLLVISHLPSPMSSDEFLIGPILRQVFELSGDHSSAVTSVSWSSVTPSIGELAAASNNC 114
Query: 120 IFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKN-TLWE 178
I+VF+HDS SSKGSFCWSQNA+LVQ TKVEAI+WTGSGDGI++GG++ VLW+++N + WE
Sbjct: 115 IYVFSHDSGSSKGSFCWSQNAVLVQSTKVEAIKWTGSGDGIISGGIDVVLWRRRNRSSWE 174
Query: 179 IAWKFKENYPQNLVSATWSIEGPSATA-ASMSQLDLLGPKEAGKCVFICCSDGKSEYIKL 237
IAWKFK + PQNLVSATWSIEGPSA A A S+L + K V +C + SEY K
Sbjct: 175 IAWKFKRDEPQNLVSATWSIEGPSAAANAYPSKLHAKRSSDESKSVLVCYGNSISEYEKC 234
Query: 238 ELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDT 297
ELCHPQPVSMVQWRP T S D K S RH+LLTCCLDGT RLW E+D+GK +K+ KD
Sbjct: 235 ELCHPQPVSMVQWRPLTINQSRRDVKHSPRHMLLTCCLDGTARLWTEIDNGKVKKLGKDN 294
Query: 298 NDHKTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHG 357
+DHKT R+SFCV A+IEINQ L+G+LG+D+V+ WA E ++ TGEG+N IST Y H
Sbjct: 295 SDHKT-RKSFCVAAVIEINQVLSGSLGIDMVLNWATEHAGVYRTGEGSN--ISTERYGHD 351
Query: 358 GTGKCEWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQ---NLELEHPHNSGFSGF 414
GKC+WL+G+GPG+++T W IHCLDDISP+RFPRVTLWK+Q +LE H +GFS F
Sbjct: 352 WVGKCDWLIGFGPGTVITFWVIHCLDDISPVRFPRVTLWKRQELQDLEGGHLGGAGFSKF 411
Query: 415 QGQSLLNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQI 474
+ LLNKV+ISR+C+S P CSLVHL HCNSLVWSLLH Q+SGD+ED SSDK T
Sbjct: 412 KDSILLNKVLISRNCLSSPPDECSLVHLLHCNSLVWSLLHIQKSGDMEDRSSDKYLT--- 468
Query: 475 LSCSASRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTL 534
S++ +S GHT KILQVA+HP + E LA SLDS+GLL+FWS+S ++ L TL
Sbjct: 469 ---SSANGVSCGGHTRKILQVALHPYIYELALAASLDSDGLLIFWSVSILNKL--GLSTL 523
Query: 535 MPSWKLCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVC 594
+ +WK CGK T S YTSL+WAPS+LDED VL MGHVGGIDCFIVKISQ + D++C
Sbjct: 524 ISTWKFCGKFVTCDSFCKYTSLKWAPSMLDEDHVLFMGHVGGIDCFIVKISQ-KGGDVIC 582
Query: 595 HYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHS 654
H+ CTIP TGH YEDGP +IF +PLPS +KT YNKFMLLG+W+ ++LSWE+T H
Sbjct: 583 HHACTIPLTGHNAYEDGPRDIFVIPLPSTCNKTFKYNKFMLLGIWMNAFQALSWEVTLHC 642
Query: 655 FDLSESCCGC-IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVV 713
FDL S C C D N+ + KFE TF K+Y + VNPCSSQ PEP++ + +TSF+V+
Sbjct: 643 FDLQRSSCKCNFDYQNSSESCAWKFENTFANKRYCLSVNPCSSQLPEPYSYDQITSFSVI 702
Query: 714 CPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLV 773
P L PMQ+ L D D P Y MATG DG+LR+WRS T + WELVG V
Sbjct: 703 GPGYLSPMQEGLGLDKDTSCNFPAYIMATGCFDGTLRMWRSNSSKLPTPAILWELVGNFV 762
Query: 774 AHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIV 833
AH+GPV+AI LTD GRKIAT+SA S+ + S + IW+SV + GSFVLE LS D ++V
Sbjct: 763 AHEGPVTAIRLTDCGRKIATLSAGSNMDGSSILHIWDSVHLIGAGSFVLEAILSIDGDVV 822
Query: 834 AVNWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-H 892
A+NWLTL NGQ LGVC+QNEL+VYAQ+ GQ L++ SL +NWFC+A + T A
Sbjct: 823 ALNWLTLGNGQFCLGVCMQNELRVYAQQRSVGQTLVNLGKSLNGENWFCIAVAHTLPAIR 882
Query: 893 DFTWGRRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSN-VFIDNFCCHKSGINENIVST 951
D WG +A A+++H SY S+ SQ+LF +D KH KC++N V +D C + G +I+S+
Sbjct: 883 DLLWGSQAAAVIIHDSYYSVLSQWLFFVDNKHPVKCHANSVVVD---C-EGGKGTDILSS 938
Query: 952 IFTVCDSESSAGDQRGDYESAPSVNIDMKNDHLVASDQLKCGG-AILGSWSMLEIAEKLR 1010
IFT CD +S ++ A N + + V QL+ G G WS++EIAEKLR
Sbjct: 939 IFTDCDIANSQLREKSFLMKANKNNEYLSSSLSVVMAQLRQGSDKRFGFWSLVEIAEKLR 998
Query: 1011 GSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLST 1070
G LPVYHP+AL +NIYSGNWK AY +VRHL E L S Y SE+R K+S I PQI LS+
Sbjct: 999 GMLPVYHPEALLMNIYSGNWKCAYAAVRHLAEYLTSGYASERRCSSGKNSFIAPQIHLSS 1058
Query: 1071 YFEGLLSKGSTDNGFQW-SGLNTFSTSLQFRQFAYNMDLDASNS---SSSTKSELSGFVE 1126
YFEGLLS+ ST F+W + +N ++S QF F + + DASN+ SS+T SEL GFVE
Sbjct: 1059 YFEGLLSRDSTVKEFKWRADVNLPASSSQF--FVHGTNFDASNNIFPSSTTASELHGFVE 1116
Query: 1127 LLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFF 1186
++ +Y+LA +T+ EK++ILA++DLL E + SAS YENLDEPG+RFWV LRFQ L F
Sbjct: 1117 PVEKMYDLAALTNVEKLQILAIIDLLTEI--QQSASAYENLDEPGRRFWVALRFQQLYFC 1174
Query: 1187 RRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQL 1246
RR G+ S EEL VD+RL++WAFHS+CQETL GS LPNEP+W EM+ALGVGFW+T+ QL
Sbjct: 1175 RRSGRSSSVEELVVDTRLMSWAFHSDCQETLLGSFLPNEPSWKEMQALGVGFWFTNNAQL 1234
Query: 1247 RTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEE 1306
RTRMEKLAR+QYL+ +DPKDCALLY+ALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEE
Sbjct: 1235 RTRMEKLARMQYLRNRDPKDCALLYVALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEE 1294
Query: 1307 KNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHG 1366
KNKAAALKNAYVL+GRHQL LAIAFFLLGGD SA+TVCA+NLGD QLALVICRL+E G
Sbjct: 1295 KNKAAALKNAYVLMGRHQLGLAIAFFLLGGDNYSAITVCAKNLGDEQLALVICRLIEGRG 1354
Query: 1367 GPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNS 1426
GPLE +L+TKF LPS+ ERGDYWL SLL+WELGNY +SFLTML F V+ ALSSN+
Sbjct: 1355 GPLEHHLITKFALPSATERGDYWLASLLKWELGNYFESFLTMLDFPKNCVLGKSALSSNN 1414
Query: 1427 VAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSS 1486
AFMDP IGL+CL+LANK MRNAIGE+NAAILGRWA M ATA NR GLPLEAL+CLSS
Sbjct: 1415 AAFMDPHIGLHCLILANKYCMRNAIGERNAAILGRWATYMAATAFNRSGLPLEALECLSS 1474
Query: 1487 SPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFS 1546
S S G DQ S+ ++ S IL ILKPS A+ S NWL R+VALHLESCAKLDL+LQYFS
Sbjct: 1475 SSSNSGNIDQGSISDVDGSQILHVILKPS-ASDSVNWLSRNVALHLESCAKLDLALQYFS 1533
Query: 1547 KLIRDHPSWPD--LGFGRASKCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSL 1604
KL+ +HPSWPD +G + S D E+HQ++KL++NFQ+KLYT ++ FEQ+F + SS L
Sbjct: 1534 KLMGEHPSWPDTIIGSVQLSSHVKDCEVHQFKKLLENFQEKLYTGISKFEQKFLVVSSCL 1593
Query: 1605 IAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISI 1664
I IL L NNG LF GYD+L GY Q Q++S +V LY HK LL++ +DIS+
Sbjct: 1594 IKMILVWLHNNGSLFTGYDILFGYTSQYHLQDESR-SVGNSVLYPLLHKTLLESVQDISL 1652
Query: 1665 FLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSG 1724
LSRFI + SI S N+E V E RS WS+ QG+YFQ I+ LWSLR A+R+ SG
Sbjct: 1653 LLSRFIVSCSIN-SLQPFENNETV---ETRS-WSDTQGHYFQGIMSMLWSLRTAVRSVSG 1707
Query: 1725 SFPEELIT-PLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNL 1783
E++ L LLDL+E+YVHFASAWLQR+SKGLL ++QP+LIT TNGHTPYEVD+ NL
Sbjct: 1708 LSSEDVTARSLVLLDLFEFYVHFASAWLQRNSKGLLLMVQPLLITCTNGHTPYEVDITNL 1767
Query: 1784 KTFFHQSAELLTRNTSI-DNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHM 1842
K + AELL N S+ D VG + V+ + + + M+S EDE+W ++G CLWQH+
Sbjct: 1768 KNILYHIAELLGSNLSVNDTGVGHI-VANCMPSTQDRETMHSFSEDEKWHVIGTCLWQHL 1826
Query: 1843 SRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQMRLLTLFLAQLL 1902
SR +KHKL+ +S+ ++++ S + G ISSW S + +K+++ +L LA+LL
Sbjct: 1827 SRLLKHKLHLLSINIEDDCFSGVSHGLISSWPSGSIGSDDT---MKKEIMSFSLILAKLL 1883
Query: 1903 KSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNII 1962
K +LH+SS+HVK L+ KVEN + T WL+++ SQ+ LYQ S +I+
Sbjct: 1884 KITILHVSSYHVKIFGSLLQLKVENELHMTTLTWLKDSIASQAKVLYQD-----ASADIM 1938
Query: 1963 NNKDEAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKK 2022
N+KDE + ++LWD C+DP+I+ EGF EK+NW + N + S+ WS + ++ ++E ++
Sbjct: 1939 NSKDELSTFDILWDTCADPNIVSEGFALEKINWSEFFNRRSSQSWSKFYKIIRGEYETRE 1998
Query: 2023 TCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKRNGE 2082
+E +L + +S EV S K LF+N R +W KDA ++ E FQ KEI KR+GE
Sbjct: 1999 GLDHEVRLSTNRSSDEVESPGKGLFKNGRAVLTTWQKDATISKEETLFQNAKEIYKRDGE 2058
Query: 2083 LFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTP 2142
L EALCVNS+++ Q AIASNRKGI+FF+ +D + D+ +YIWADADWP NGWAG+ESTP
Sbjct: 2059 LLEALCVNSVNEGQAAIASNRKGIIFFSWKDGVTFVDKSEYIWADADWPPNGWAGAESTP 2118
Query: 2143 VPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWE 2202
VPT VSPGVGLGS KG+HL GYAGIGAS LGWE
Sbjct: 2119 VPTSVSPGVGLGSKKGSHL----------------------------GYAGIGASGLGWE 2150
Query: 2203 TQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA 2262
Q+DFE+++DPPATVE ISTRAFSSHP R FFLVGSSNTHIYLWEFG +KATATYGVLPA
Sbjct: 2151 VQEDFEEFLDPPATVETISTRAFSSHPSRSFFLVGSSNTHIYLWEFGNNKATATYGVLPA 2210
Query: 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA 2321
ANVPPPYALAS+SALQFD GHRFASAALDGTVCTWQLEVGGRSN+ P ES LCF+ +A
Sbjct: 2211 ANVPPPYALASVSALQFDPCGHRFASAALDGTVCTWQLEVGGRSNIHPTESSLCFNGYA 2269
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068002|ref|XP_002302640.1| predicted protein [Populus trichocarpa] gi|222844366|gb|EEE81913.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2550 bits (6608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1333/2397 (55%), Positives = 1650/2397 (68%), Gaps = 171/2397 (7%)
Query: 1 MPEAESGCSLQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGA 60
MPE + + + ++PT+HLPL+ RS+ IP APTRS STIDWLPDF+GYSWVAYGA
Sbjct: 1 MPETSTASPTRAS---INPTDHLPLSLFRSDIIPPAPTRSASTIDWLPDFSGYSWVAYGA 57
Query: 61 SSLLVISHFPSPLSQEEALIGPIFRQVFALS-DNSLPVTSISWSPETPSIGQLAAASENC 119
SSLLVISH PSPLS EEA IGPI +QVF LS D+S PV S+SWSP TPSIG+LAAAS+NC
Sbjct: 58 SSLLVISHLPSPLSPEEAAIGPILQQVFELSSDDSSPVKSVSWSPVTPSIGELAAASDNC 117
Query: 120 IFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEI 179
I VF+HDSASSKGSFCWSQNA+LVQ TKV AI WTGSGDGIV+GG++ VLW+++N WEI
Sbjct: 118 ISVFSHDSASSKGSFCWSQNAMLVQSTKVGAITWTGSGDGIVSGGIDVVLWRRRNMSWEI 177
Query: 180 AWKFKENYPQNLVSATWSIEGPSATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLEL 239
AWKFK + PQNLVSATWSIEGPSATAA +S++D+ G + CV +C +G SEY+K EL
Sbjct: 178 AWKFKRDQPQNLVSATWSIEGPSATAAYLSKVDVKGSDQTSNCVLVCYGNGTSEYVKTEL 237
Query: 240 CHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTND 299
HPQPVS +QWRPST + + D K +RHVLLTCCLDGT+RLW E+DSGK RK+ KD +D
Sbjct: 238 HHPQPVSKIQWRPSTGQQAQRDKKHLRRHVLLTCCLDGTLRLWTEVDSGKVRKLGKDNHD 297
Query: 300 HKTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGT 359
HKT+R+SFC+ A+IEINQ L G LGMD+ +WA EI ++ GEG + S H
Sbjct: 298 HKTVRKSFCIAAVIEINQVLKGTLGMDVFFSWAAEIGGIYRIGEGISQTFSVEGNGHDRV 357
Query: 360 GKCEWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQ---NLELEHPHNSGFSGFQG 416
G+CEWL+G+GPG +T WAIHCLDDISP+RFPRVTLWK Q +LE H H +GF+ F
Sbjct: 358 GRCEWLIGFGPGRGITFWAIHCLDDISPIRFPRVTLWKTQELEDLEAGHLHGAGFANFNA 417
Query: 417 QSLLNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILS 476
LL+KVV+ R+C+SG P ICSL+HLS CN LV SLL++Q D+ED S +KS + S
Sbjct: 418 WLLLDKVVVLRNCLSGPPNICSLMHLSPCNFLVRSLLYSQIPSDIEDASFNKSKIDKYSS 477
Query: 477 CSASRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMP 536
CS+ +L+ GHTGKILQVA+HP + E ELAVSLDS+GLLLFW +STISNC L+P
Sbjct: 478 CSSGGVLN-GGHTGKILQVAMHPHIYEVELAVSLDSDGLLLFWIVSTISNCSLGPAKLIP 536
Query: 537 SWKLCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHY 596
WKL GKL T SCS YTSLRWAPS L ED VLL+GH GGIDCFIVKISQ + I+CHY
Sbjct: 537 GWKLSGKLATYDSCSKYTSLRWAPSTLGEDHVLLVGHAGGIDCFIVKISQICKEGIICHY 596
Query: 597 VCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFD 656
+ TIP TGHG +EDGP NIF+VPLPS +KT YN+F+LL +WLKG + +SWE+T HSFD
Sbjct: 597 IGTIPLTGHGPFEDGPTNIFAVPLPSSCNKTFRYNRFLLLAIWLKGFQPISWEVTLHSFD 656
Query: 657 LSESCCGC-IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCP 715
LS CC C DD NT + FE TF ++Y +GV+PCSS PEP+ + +TSF+VVCP
Sbjct: 657 LSGRCCDCKFDDKNT---PVLNFENTFADRRYCVGVDPCSSHLPEPYCHDQITSFSVVCP 713
Query: 716 NNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAH 775
+ + M + L + D CS +P Y MATG SDGSL+LWRS ST +PWELVG VAH
Sbjct: 714 GDFISMPESLGSNKDLCSGVPAYVMATGCSDGSLKLWRSNSSKQSTPQIPWELVGKFVAH 773
Query: 776 QGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAV 835
QGPVSAI LT GRKIAT+SA SH + S + +WE+V V GSF+LED ++ +++++
Sbjct: 774 QGPVSAICLTACGRKIATISAGSHLDDTSILHVWEAVHVIGAGSFILEDRIAVGRDVISL 833
Query: 836 NWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-HDF 894
NWLTL NGQ LG+C+ NEL+VYAQ+H+GGQ LL + SL + +W C+A S TF A DF
Sbjct: 834 NWLTLGNGQLFLGICMHNELQVYAQKHHGGQTLL-SPQSLNVNSWSCIAVSHTFPAIRDF 892
Query: 895 TWGRRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGI-----NENIV 949
WG A AI+VH SY+S+ SQ+LFL K K NV + +G E ++
Sbjct: 893 LWGPNATAIIVHDSYISLLSQWLFLEGDKQWGKYPPNVIREELAEKLTGTLAVYHPEALI 952
Query: 950 STIFTVCDSESSAGDQRGDYESAPSVNIDMKNDHLVASDQLKCGGAILGSWSMLEIAEKL 1009
I++ G+ + Y S HLV + L G A AEK+
Sbjct: 953 MNIYS--------GNWKRAYVSV---------RHLV--EYLSSGCA----------AEKI 983
Query: 1010 RGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLS 1069
S H K + I N+ ++ N + ++ R T SS S
Sbjct: 984 YNS--ADHSK-IVPQILLSNYFEGFLLKDSGSTNKGFQWSADARLP-TSSSQFFAYNFTS 1039
Query: 1070 TYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFVELLQ 1129
+ + ST S L+ F+ +L+ F +L+ KSE+ ++LL
Sbjct: 1040 DASNNMFAASSTK-----SELSAFAETLEKYDFESLTNLE--------KSEMLAIIDLLS 1086
Query: 1130 NVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRF 1189
+V +HSA Y NLDEPGQRFWV L+FQ L FFR F
Sbjct: 1087 DV--------------------------QHSACAYANLDEPGQRFWVSLKFQQLHFFRSF 1120
Query: 1190 GKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTR 1249
G+ S EEL DSRL++WAFHS+CQE L S LPNEP+W EM+ LGVGFW+T+V QLR R
Sbjct: 1121 GRSPSVEELVGDSRLMSWAFHSDCQENLLSSFLPNEPSWKEMQTLGVGFWFTNVAQLRAR 1180
Query: 1250 MEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNK 1309
MEKLAR QYL+KKDPKD ALLYI LNR+ VL+GLFKISKDEKDKPLV FLSRNFQEEKNK
Sbjct: 1181 MEKLARSQYLRKKDPKDSALLYIVLNRLPVLSGLFKISKDEKDKPLVAFLSRNFQEEKNK 1240
Query: 1310 AAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPL 1369
AAALKNAYVL+GRHQLELAIAFFLLGGD SA+T+CA+N GD QLALVICRL+E GGPL
Sbjct: 1241 AAALKNAYVLMGRHQLELAIAFFLLGGDTYSAITICAKNFGDEQLALVICRLIEGRGGPL 1300
Query: 1370 ERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAF 1429
E +L+TKFILPS+ ERGDYWLTSLLEWELGNYSQSFL+MLG Q++++ + ALSSN+ AF
Sbjct: 1301 EHHLITKFILPSASERGDYWLTSLLEWELGNYSQSFLSMLGLQASSLTDKSALSSNNAAF 1360
Query: 1430 MDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLP------------ 1477
MDP IGL+CL LA+KNSMRNA+GE+NAAIL RWA +M ATA NRCGLP
Sbjct: 1361 MDPHIGLHCLSLASKNSMRNAVGEQNAAILRRWATIMAATAFNRCGLPVSSLLCHILKTA 1420
Query: 1478 -----LEALDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHL 1532
LEAL+CL SS + +GG D SV ++ S IL IL P A+ S NWL DVAL L
Sbjct: 1421 ESFMQLEALECLQSSLNILGGIDPGSVSDVDQSQILHGILNPFASE-SCNWLSGDVALCL 1479
Query: 1533 ESCAKLDLSLQYFSKLIRDHPSWPD--LGFGRASKCFMDFEIHQYEKLVQNFQQKLYTAL 1590
+S KLDL+LQYFSKL+ +HPSW + +G + D EIHQ+EKL++ F++KLYT L
Sbjct: 1480 QSHGKLDLALQYFSKLMSEHPSWLNTIVGSIQPGTSSKDCEIHQHEKLLEEFREKLYTGL 1539
Query: 1591 AFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFC 1650
FEQ+F + S +I IL C+NGL FIG+DL+ Y + +Q+K SD V+ LY
Sbjct: 1540 LMFEQKFLVVPSCVIKMILVWSCSNGLPFIGHDLIVNYASRNHTQDK-SDGVESFILYPL 1598
Query: 1651 QHKPLLKAAEDISIFLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIF 1710
HKP LK ED S+ LSRFI + S+TC K E EV+S WS+ G+YFQ I+
Sbjct: 1599 LHKPCLKFMEDASLLLSRFITSCSVTCFQPKPFYIEGTMSVEVKSIWSDMHGFYFQGIMQ 1658
Query: 1711 SLWSLRAAMRTFSGSFPEELITPLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYT 1770
+L SLRAAMR FS S E++ L +LDL+EYY++FASAWLQR SKGLL ++QP+LIT T
Sbjct: 1659 TLRSLRAAMRIFSSS--EDVSRSLVILDLFEYYIYFASAWLQRKSKGLLLMVQPLLITLT 1716
Query: 1771 NGHTPYEVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDER 1830
+GHTPYEVD+ NLK+ H AE L + SID+ +V K E+ M S +DE+
Sbjct: 1717 SGHTPYEVDIGNLKSILHHIAE-LPFSLSIDDAGSGHEVVKCSSHEQDGQTMLSFSKDEK 1775
Query: 1831 WQIMGACLWQHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQ 1890
W ++GACLW HMSRFMKH+L+ +S+KL++ S + G++SS SSLT S SI KE+
Sbjct: 1776 WHVVGACLWMHMSRFMKHQLHLLSIKLEDGCFSGVSHGNVSSLASSLTIFGSDSISRKEE 1835
Query: 1891 MRLLTLFLAQLLKSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQ 1950
+ +L LA+LL++ L+H+SS+HVK L FL+ +VEN IPT W++E++ SQ+ LYQ
Sbjct: 1836 IGFCSLILAKLLRTMLVHVSSYHVKLLGLFLQQEVENRLQIPTLVWMKESSLSQAKALYQ 1895
Query: 1951 HLNQIVVSMNIINNKDEAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHI 2010
VS +++N+KDE + ++LWD C+DP ++ EGF QE++N + N K +GWS
Sbjct: 1896 D-----VSADMMNSKDELSSFDVLWDACADPRMVSEGFVQEEINLSLFFNHKSYEGWSDE 1950
Query: 2011 NEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPF 2070
+ + E + TC++E KLG+ + E+GS S M EV F
Sbjct: 1951 YMSITGELETEDTCEHELKLGNHPSGDEIGSPS-----------------IVMTKEVSHF 1993
Query: 2071 QAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADW 2130
Q K + KR+GEL EALC+NS+D+RQ A+ASNRKGIVFF+ E IP DQ +YIW+DADW
Sbjct: 1994 QNAKVVHKRDGELVEALCINSVDERQAALASNRKGIVFFSWEVGIPFGDQSEYIWSDADW 2053
Query: 2131 PQNGWAGSESTPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPG 2190
P NGWAG+ESTP+PT VSPGVGLGS KGAHLGLG
Sbjct: 2054 PPNGWAGAESTPIPTCVSPGVGLGSTKGAHLGLG-------------------------- 2087
Query: 2191 YAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGK 2250
LGWE Q+DFE++VDP ATVEN STRAFSSHP RPFFL GSSNTHIYLWEFGK
Sbjct: 2088 --------LGWEVQEDFEEFVDPLATVENTSTRAFSSHPSRPFFLAGSSNTHIYLWEFGK 2139
Query: 2251 DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310
+KATATYGVLPAANVPPPYALASISA+QFDHYGHRFA+AALDGTVCTWQLEVGGRSN+ P
Sbjct: 2140 EKATATYGVLPAANVPPPYALASISAVQFDHYGHRFATAALDGTVCTWQLEVGGRSNIHP 2199
Query: 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367
ESCLC + HA DV+YITSSGSVIAA G+SSNG NVV+WDTLAPPT+SRASI CHEG
Sbjct: 2200 TESCLCLNGHASDVTYITSSGSVIAATGYSSNGANVVIWDTLAPPTTSRASIVCHEG 2256
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433024|ref|XP_004134298.1| PREDICTED: uncharacterized protein LOC101204824 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2369 bits (6140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1255/2377 (52%), Positives = 1633/2377 (68%), Gaps = 89/2377 (3%)
Query: 17 VDPTEHLPLAFLRSEFIPTAPTRST---STIDWLPDFAGYSWVAYGASSLLVISHFPSPL 73
+DP LPL L SE IP AP R S+IDW+PDFAGY+WVAYGASSLLVISHFPSPL
Sbjct: 8 MDPISRLPLPLLGSEPIPPAPNRLDPLGSSIDWIPDFAGYAWVAYGASSLLVISHFPSPL 67
Query: 74 SQEEALIGPIFRQVFALSDNSL-PVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKG 132
S E GPIFRQV LS + L V ++SWSP PS G+LAAA+ N I+VF+HD +S+G
Sbjct: 68 SPHETKFGPIFRQVLELSGDHLSAVNAVSWSPVLPSEGELAAAAGNRIWVFSHDLGASRG 127
Query: 133 SFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLV 192
SFCW QN++LVQ KVEAI+WTGSGDGI+A G+E VLWK N WEIAWKFK + PQ LV
Sbjct: 128 SFCWRQNSVLVQSLKVEAIQWTGSGDGIIACGVEVVLWKNTNKSWEIAWKFKPDVPQTLV 187
Query: 193 SATWSIEGPSATA--ASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQW 250
SA+WS EGP ATA A +S+ + + + A + V + S+G+ ++K+ELCHP P++++QW
Sbjct: 188 SASWSTEGPFATAPHARISKTENMLTERACRSVLVSQSEGEYGHVKIELCHPLPITVIQW 247
Query: 251 RPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTIRRSFCVG 310
RPS + P K S R+VLLTCCLDGTVRLW E ++GK RK +KD N+ K++RR F V
Sbjct: 248 RPSV--NGPEIGKHSPRNVLLTCCLDGTVRLWSETENGKVRKFSKDVNNKKSMRRHFSVA 305
Query: 311 AIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEWLVGYGP 370
A++EINQAL G LGMD+ +TWA EIR M + E S+ +E G CEWL+ GP
Sbjct: 306 AVVEINQALKGTLGMDLFVTWATEIRGMCQPFEVTKKVQSSVGFEQNKAGNCEWLISLGP 365
Query: 371 GSLVTLWAIHCLDDISPLRFPRVTLWKKQNL---ELEHPHNSGFSGFQGQSLLNKVVISR 427
GSLVT WA+HCLDD+SPLRFP+VTLWKKQ L E+ + G + + LL KVVISR
Sbjct: 366 GSLVTFWAVHCLDDVSPLRFPQVTLWKKQELKGFEVGRHYTDGCTNLSNKFLLKKVVISR 425
Query: 428 DCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSASRILSIEG 487
SG P+ICSL+ L CNSLVWSLL A DV D S D+ + SCS S L++ G
Sbjct: 426 IHQSGSPSICSLIQLLPCNSLVWSLLSAHTLTDVGDASFDQKRLESLSSCSFSSQLNLSG 485
Query: 488 HTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTR 547
H GKIL VAVHP E ++A SLDSNGLLLFWSLS+ISNC PTL P+W+LCGKL T+
Sbjct: 486 HAGKILHVAVHPYNCEVKIAASLDSNGLLLFWSLSSISNCALGSPTLTPTWELCGKLVTQ 545
Query: 548 KSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGH 607
SCS YTS++WAPS+LDE+++LLMGH GID F V+ISQ++ ++ CHY+CTIPFTGHG
Sbjct: 546 DSCSKYTSVQWAPSILDEELILLMGHARGIDFFAVRISQSDEENTECHYLCTIPFTGHGP 605
Query: 608 YEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGC--- 664
+E+GP NIFS+ LPS + T +NKFMLLG+W+KG ++LSWEIT H++D+S + C
Sbjct: 606 FENGPTNIFSILLPSDCNITYKFNKFMLLGIWMKGFQALSWEITLHAYDISGTGLHCKCD 665
Query: 665 IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQK 724
ID+ N + S+ FE+ F KKY + + PCSSQ P + +TSFAVV VP+QQK
Sbjct: 666 IDNENRAELSILTFESAFGSKKYCVSIIPCSSQLPNSQIHDQITSFAVVHQGTFVPVQQK 725
Query: 725 LVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISL 784
L +P + P Y MATG +DG L+LW+S +G S +PWELV ++VAHQGP++A+SL
Sbjct: 726 LASSGEPST--PAYIMATGSADGCLKLWKSNVGKPSIFHVPWELVCVVVAHQGPITALSL 783
Query: 785 TDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQ 844
TD GRKIAT+S + S+V +WE + G + ED LSF++NI+AV+WLTL NGQ
Sbjct: 784 TDCGRKIATISKDNLECKTSSVHLWE-LAYLGAGILLFEDELSFESNIIAVDWLTLGNGQ 842
Query: 845 SLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAAH-DFTWGRRAIAI 903
LLG+CLQNEL VY+ + +G LL+T SL + W C+ S T ++ F WG R AI
Sbjct: 843 FLLGICLQNELCVYSLKRFGCHTLLETTKSLDTKTWICIGISRTLPSNCGFLWGPRTTAI 902
Query: 904 VVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAG 963
V+H Y I S +LFL H A CN++ + H +G N NI +F
Sbjct: 903 VLHDRYFCIVSPWLFLGVTNHDAMCNTHYIGETKTHHVNGTNTNISVAVF---------A 953
Query: 964 DQRGDYESAPSVNIDMKNDHLVASDQLKCGGAILGSWSMLEIAEKLRGSLPVYHPKALFL 1023
D+ ++ P D + + K LG SM ++ +KL GSL +HP+AL
Sbjct: 954 DKCCGIKTLP--------DDIY---ERKYRPGSLGLISMPDVVDKLCGSLSSFHPQALLF 1002
Query: 1024 NIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLSTYFEGLLSKGSTDN 1083
NIYSG WKRAY ++ HL+E+L S+ S YT +P+I LS YFEG++ K STD
Sbjct: 1003 NIYSGKWKRAYSALSHLIEHLSSDKKSSANSTYT-----IPEIPLSDYFEGVI-KTSTDK 1056
Query: 1084 GFQWSGLNTFSTSLQFR----QFAYNMDLDASNSS---SSTKSELSGFVELLQNVYELAG 1136
G QWS T S S QF+ Q+A+N D ++++S SSTKSE S F+E L+ +YELAG
Sbjct: 1057 GVQWS---TNSLSSQFKEGVSQWAFNWDSISNDNSFVPSSTKSEFSSFIEPLEKLYELAG 1113
Query: 1137 VTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAE 1196
+T EK + LA+VDLL E NK S+S YE+LDEPG+R+W+ RFQ L F RR + S E
Sbjct: 1114 LTSMEKTQTLAIVDLLGEISNKSSSSAYESLDEPGRRYWIAWRFQQLQFLRRESRSASME 1173
Query: 1197 ELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARL 1256
ELA+DS+LI WA+HS+CQE L S+ NEPTW EMR+LGVG W+T+ TQLRTRMEKLAR
Sbjct: 1174 ELAIDSKLIGWAYHSDCQEILLNSVSSNEPTWQEMRSLGVGIWFTNTTQLRTRMEKLARS 1233
Query: 1257 QYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNA 1316
QYLKKKDPKDC LLY+ LNRIQVLAGLFKIS+DEKDKPLVGFLSRNFQEEKNKAAALKNA
Sbjct: 1234 QYLKKKDPKDCMLLYVTLNRIQVLAGLFKISRDEKDKPLVGFLSRNFQEEKNKAAALKNA 1293
Query: 1317 YVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTK 1376
YVLLGRHQLELA+AFFLLGGD+ SAV+VCA+NLGD QLALVIC LVE GGPL+++L+TK
Sbjct: 1294 YVLLGRHQLELAVAFFLLGGDSYSAVSVCAKNLGDEQLALVICHLVEGRGGPLQQHLITK 1353
Query: 1377 FILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAFMDPSIGL 1436
F+LPS+IE+GD WL S+LEWELGNY++SFL ML S +V LSS +A +DPS+G+
Sbjct: 1354 FMLPSAIEKGDTWLASILEWELGNYTRSFLNMLRLDSNSVTGPPFLSSKHIALLDPSVGM 1413
Query: 1437 YCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSPSTIGGTDQ 1496
YCL+LA KNSM+ A+G ++A IL + A LM AT+LNR GLPLEAL+ +S+ S +D
Sbjct: 1414 YCLLLATKNSMKKAVGVQSAEILCQLATLMMATSLNRRGLPLEALEHVSTCGSITDVSDG 1473
Query: 1497 ESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRDHPSWP 1556
+ ++I + I + S SS+WL + A+HLE KLDL+ QYFSKLIR HPSWP
Sbjct: 1474 TNKVDIQCFDTISNICQKSPGD-SSSWLSVEFAVHLEHQVKLDLAAQYFSKLIRKHPSWP 1532
Query: 1557 DLGFGRAS--KCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKILSLLCN 1614
+ F C ++E+ YEK ++++Q KL A FE +FS+ +SL++ +L LCN
Sbjct: 1533 TINFESVGCMSCSKEYEM-DYEKSLESYQHKLSVGFAQFEMKFSLLPASLVSMMLLFLCN 1591
Query: 1615 NGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISIFLSRFIAATS 1674
GL FIG D++ G+ Q +K+ T L ++ HK LLK A +IS SR+ A S
Sbjct: 1592 LGLQFIGNDIVRGFTSQECPDDKNLTTYSFL-VHRLLHKALLKTAREISFSASRYTIACS 1650
Query: 1675 ITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEELITPL 1734
++ E+RS+ + YY Q ++ SL +RAA+RT S ++ ++ L
Sbjct: 1651 LS-----------FHGGEIRSKCLDTWWYYLQGLLLSLQGVRAALRTTHDSLNDDRVSKL 1699
Query: 1735 F-LLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFHQSAEL 1793
+LDL EY ++F SAWL RDS+ LL+++Q +L N +P++V++ LK Q EL
Sbjct: 1700 LTILDLVEYNLYFTSAWLLRDSRCLLKMVQLLL---ANEQSPHDVEIERLKQLLSQFGEL 1756
Query: 1794 LTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHMSRFMKHKLNSM 1853
+ +N S D + + ++ + + +E D+++SIP DERW I+GACLW HMS+F+KHKL ++
Sbjct: 1757 IAQNLSSD-VDHNHEILEGMANEEYDDIVHSIPGDERWHIIGACLWHHMSKFIKHKLTTL 1815
Query: 1854 SVKLDENHSSRLLGGHISSWTSSLTNPESASIG-LKEQMRLLTLFLAQLLKSALLHISSH 1912
+ K E S + G+++SW L+ +S LK + L++ LL L SS+
Sbjct: 1816 TNKSKEGSFSGITLGNLNSWVPCLSTVKSDQNDILKNMIELISKNFTSLLTIVLAQASSY 1875
Query: 1913 HVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDEAAISE 1972
+KQL FL+YK++ + T W ++ S+S +H + ++++ N + E
Sbjct: 1876 QLKQLVSFLQYKLDQRLCVATVVWFEQF--SKSSEHKKHHADEMYNIDMCNKGE----FE 1929
Query: 1973 LLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNEDKLGS 2032
LW++ S+P+++ E F EK++ + KLSK W+ I G E TC E L +
Sbjct: 1930 TLWNITSNPNLVSECFAHEKVHLLHCFDRKLSKRWTDIYNGTTRPEE---TCSREGALIN 1986
Query: 2033 TLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKRNGELFEALCVNSI 2092
+ AS +GS K L R+ RT S K+ ++V+PFQ PKEI +RNGEL EALC+NS+
Sbjct: 1987 SSASDTIGSPGK-LLRSGRTLVSS-EKELATLDDVMPFQKPKEIYRRNGELLEALCINSV 2044
Query: 2093 DQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWP--QNGWAGSESTPVPTFVSPG 2150
D RQ A+ASN+KGI+FF+ ED + D+ YIW++++WP NGWAGSESTP PT V PG
Sbjct: 2045 DGRQAALASNKKGIIFFSWEDGMASRDEEDYIWSNSEWPLNLNGWAGSESTPAPTCVFPG 2104
Query: 2151 VGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDY 2210
VGLG+NKGAHLGLGGAT+GVGS ARPGRDLTGG AFGI GYAG+GAS LGWETQ+DFE++
Sbjct: 2105 VGLGTNKGAHLGLGGATVGVGSPARPGRDLTGGGAFGISGYAGMGASGLGWETQEDFEEF 2164
Query: 2211 VDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA 2270
VDPPAT E+ STRAFSSHP RP FLVGS+NTH+YLWEFGKD+ATATYGVLPAANVPPPYA
Sbjct: 2165 VDPPATAEHTSTRAFSSHPSRPLFLVGSTNTHVYLWEFGKDRATATYGVLPAANVPPPYA 2224
Query: 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS 2330
LASIS++QFD GHRFA+AALDGTVC+WQLEVGGRSNV P ES LCF+ HA DV+Y+TSS
Sbjct: 2225 LASISSVQFDQCGHRFATAALDGTVCSWQLEVGGRSNVCPTESSLCFNGHASDVTYVTSS 2284
Query: 2331 GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367
GS+IA AG+SS+ +NVV+WDTLAPP +S+A+I CHEG
Sbjct: 2285 GSIIAVAGYSSSAVNVVIWDTLAPPKTSQAAIMCHEG 2321
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478209|ref|XP_004155251.1| PREDICTED: uncharacterized LOC101204824 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2280 bits (5909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1222/2382 (51%), Positives = 1583/2382 (66%), Gaps = 171/2382 (7%)
Query: 17 VDPTEHLPLAFLRSEFIPTAPTRST---STIDWLPDFAGYSWVAYGASSLLVISHFPSPL 73
+DP LPL L SE IP+AP R S+IDW+PDFAGY+WVAYGASSLLVISHFPSPL
Sbjct: 8 MDPISRLPLPLLGSEPIPSAPNRLDPLGSSIDWIPDFAGYAWVAYGASSLLVISHFPSPL 67
Query: 74 SQEEALIGPIFRQVFALSDNSL-PVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKG 132
S E GPIFRQV LS + L V ++SWSP PS G+LAAA+ N I+VF+HD +S+G
Sbjct: 68 SPHETKFGPIFRQVLELSGDHLSAVNAVSWSPVLPSEGELAAAAGNRIWVFSHDLGASRG 127
Query: 133 SFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLV 192
SFCW QN++LVQ KVEAI+WTGSGDGI+A G+E VLWK N WEIAWKFK + PQ LV
Sbjct: 128 SFCWRQNSVLVQSLKVEAIQWTGSGDGIIACGVEVVLWKNTNKSWEIAWKFKPDVPQTLV 187
Query: 193 SATWSIEGPSATA--ASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQW 250
SA+WS EGP ATA A +S+ + + + A + V +
Sbjct: 188 SASWSTEGPFATAPHARISKTENMLTERACRSVLVING---------------------- 225
Query: 251 RPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTIRRSFCVG 310
P +HSP R+VLLTCCLDGTVRLW E ++GK RK +KD N+ K++RR F V
Sbjct: 226 -PEIGKHSP-------RNVLLTCCLDGTVRLWSETENGKVRKFSKDVNNKKSMRRHFSVA 277
Query: 311 AIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEWLVGYGP 370
A++EINQAL G LGMD+ +TWA EIR M + E S+ +E G CEWL+ GP
Sbjct: 278 AVVEINQALKGTLGMDLFVTWATEIRGMCQPFEVTKKVQSSVGFEQNKAGNCEWLISLGP 337
Query: 371 GSLVTLWAIHCLDDISPLRFPRVTLWKKQNL---ELEHPHNSGFSGFQGQSLLNKVVISR 427
GSLVT WA+HCLDD+SPLRFP+VTLWKKQ L E+ + G + + LL KVVISR
Sbjct: 338 GSLVTFWAVHCLDDVSPLRFPQVTLWKKQELKGFEVGRHYTDGCTNLSNKFLLKKVVISR 397
Query: 428 DCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSASRILSIEG 487
SG P+ICSL+ L CNSLVWSLL A DV D S D+ + SCS S L++ G
Sbjct: 398 IHQSGSPSICSLIQLLPCNSLVWSLLSAHTLTDVGDASFDQKRLESLSSCSFSSQLNLSG 457
Query: 488 HTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTR 547
H GKIL VAVHP E ++A SLDSNGLLLFWSLS+ISNC PTL P+W+LCGKL T+
Sbjct: 458 HAGKILHVAVHPYNCEVKIAASLDSNGLLLFWSLSSISNCALGSPTLTPTWELCGKLVTQ 517
Query: 548 KSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGH 607
SCS YTS++WAPS+LDE+++LLMGH GID F V+ISQ++ ++ CHY+CTIPFTGHG
Sbjct: 518 DSCSKYTSVQWAPSILDEELILLMGHARGIDFFAVRISQSDEENTECHYLCTIPFTGHGP 577
Query: 608 YEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGC--- 664
+E+GP NIFS+ LPS + T +NKFMLLG+W+KG ++LSWEIT H++D+S + C
Sbjct: 578 FENGPTNIFSILLPSDCNITYKFNKFMLLGIWMKGFQALSWEITLHAYDISGTGLHCKCD 637
Query: 665 IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQK 724
ID+ N + S+ FE+ F KKY + + PCSSQ P + +TSFAVV VP+QQK
Sbjct: 638 IDNENRAELSILTFESAFGSKKYCVSIIPCSSQLPNSQIHDQITSFAVVHQGTFVPVQQK 697
Query: 725 LVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISL 784
L +P + P Y MATG +DG L+LW+S +G S +PWELV ++VAHQGP++A+SL
Sbjct: 698 LASSGEPST--PAYIMATGSADGCLKLWKSNVGKPSIFHVPWELVCVVVAHQGPITALSL 755
Query: 785 TDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQ 844
TD GRKIAT+S + S+V +WE + G + ED LSF++NI+AV+WLTL NGQ
Sbjct: 756 TDCGRKIATISKDNLECKTSSVHLWE-LAYLGAGILLFEDELSFESNIIAVDWLTLGNGQ 814
Query: 845 SLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAAH-DFTWGRRAIAI 903
LLG+CLQNEL VY+ + +G LL+T SL + W C+ S T ++ F WG R AI
Sbjct: 815 FLLGICLQNELCVYSLKRFGCHTLLETTKSLDTKTWICIGISRTLPSNCGFLWGPRTTAI 874
Query: 904 VVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAG 963
V+H Y I S +LFL H A CN++ + H +G N NI +F
Sbjct: 875 VLHDRYFCIVSPWLFLGVTNHDAMCNTHYIGETKTHHVNGTNTNISVAVF---------A 925
Query: 964 DQRGDYESAPSVNIDMKNDHLVASDQLKCGGAILGSWSMLEIAEKLRGSLPVYHPKALFL 1023
D+ ++ P D + + K LG SM ++ +KL GSL +HP+AL
Sbjct: 926 DKCCGIKTLP--------DDIY---ERKYRPGSLGLISMPDVVDKLCGSLSSFHPQALLF 974
Query: 1024 NIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLSTYFEGLLSKGSTDN 1083
NIYSG WKRAY ++ HL+E+L S+ S YT +P+I LS YFEG++ K STD
Sbjct: 975 NIYSGKWKRAYSALSHLIEHLSSDKKSSANSTYT-----IPEIPLSDYFEGVI-KTSTDK 1028
Query: 1084 GFQWSGLNTFSTSLQFR----QFAYNMDLDASNSS---SSTKSELSGFVELLQNVYELAG 1136
G QWS T S S QF+ Q+A+N D ++++S SSTKSE S F+E L+ +YELAG
Sbjct: 1029 GVQWS---TNSLSSQFKEGVSQWAFNWDSISNDNSFVPSSTKSEFSSFIEPLEKLYELAG 1085
Query: 1137 VTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAE 1196
+T EK + LA+VDLL E NK S+S YE+LDEPG+R+W+ RFQ L F RR + S E
Sbjct: 1086 LTSMEKTQTLAIVDLLGEISNKSSSSAYESLDEPGRRYWIAWRFQQLQFLRRESRSASME 1145
Query: 1197 ELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARL 1256
ELA+DS+LI WA+HS+CQE L S+ NEPTW EMR+LGVG W+T+ TQLRTRMEKLAR
Sbjct: 1146 ELAIDSKLIGWAYHSDCQEILLNSVSSNEPTWQEMRSLGVGIWFTNTTQLRTRMEKLARS 1205
Query: 1257 QYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ-----EEKNKAA 1311
QYLKKKDPKDC LLY+ LNRIQVLAGLFKIS+DEKDKPLVGFLSRNFQ KNKAA
Sbjct: 1206 QYLKKKDPKDCMLLYVTLNRIQVLAGLFKISRDEKDKPLVGFLSRNFQIFGENRGKNKAA 1265
Query: 1312 ALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLER 1371
ALKNAYVLLGRHQLELA+AFFLLGGD+ SAV+VCA+NLGD QLALVIC LVE GGPL++
Sbjct: 1266 ALKNAYVLLGRHQLELAVAFFLLGGDSYSAVSVCAKNLGDEQLALVICHLVEGRGGPLQQ 1325
Query: 1372 NLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAFMD 1431
+L+TKF+LPS+IE+GD WL S+LEWELGNY++SFL ML S ++ LSS +A +D
Sbjct: 1326 HLITKFMLPSAIEKGDTWLASILEWELGNYTRSFLNMLRLDSNSITGPPFLSSKHIALLD 1385
Query: 1432 PSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSPSTI 1491
PS+G+YCL+LA KNSM+ A+G ++A IL + A LM AT+LNR GLPLEAL+ +S+ S
Sbjct: 1386 PSVGMYCLLLATKNSMKKAVGVQSAEILCQLATLMMATSLNRRGLPLEALEHVSTCGSIT 1445
Query: 1492 GGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRD 1551
+D + ++I + I + S SS+WL + A+HLE KLDL+ QYFSKLIR
Sbjct: 1446 DVSDGTNKVDIQCFDTISNICQKSPGD-SSSWLSVEFAVHLEHQVKLDLAAQYFSKLIRK 1504
Query: 1552 HPSWPDLGFGRAS--KCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKIL 1609
HPSWP + F C ++E+ YEK ++++Q KL A FE +FS+ +SL++ +L
Sbjct: 1505 HPSWPTINFESVGCMSCSKEYEM-DYEKSLESYQHKLSVGFAQFEMKFSLLPASLVSMML 1563
Query: 1610 SLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISIFLSRF 1669
LCN GL FIG D++ G+ Q +K+ T F H+ L
Sbjct: 1564 LFLCNLGLQFIGNDIVRGFTSQECPDDKNLTTYS-----FLVHRLL-------------- 1604
Query: 1670 IAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEE 1729
H VR+ A+RT S ++
Sbjct: 1605 --------------------HKGVRA----------------------ALRTTHDSLNDD 1622
Query: 1730 LITPLF-LLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFH 1788
++ L +LDL EY ++F SAWL RDS+ LL+++Q +L N +P++V++ LK
Sbjct: 1623 RVSKLLTILDLVEYNLYFTSAWLLRDSRCLLKMVQLLL---ANEQSPHDVEIERLKQLLS 1679
Query: 1789 QSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHMSRFMKH 1848
Q EL+ +N S D + + ++ + + +E D+++SIP DERW I+GACLW HMS+F+KH
Sbjct: 1680 QFGELIAQNLSSD-VDHNHEILEGMANEEYDDIVHSIPGDERWHIIGACLWHHMSKFIKH 1738
Query: 1849 KLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIG-LKEQMRLLTLFLAQLLKSALL 1907
KL +++ K E S + G+++SW L+ +S LK + L++ LL L
Sbjct: 1739 KLTTLTNKSKEGSFSGITLGNLNSWVPCLSTVKSDQNDILKNMIELISKNFTSLLTIVLA 1798
Query: 1908 HISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDE 1967
SS+ +KQL FL+YK++ + T W ++ S+S +H + ++++ N +
Sbjct: 1799 QASSYQLKQLVSFLQYKLDQRLCVATVVWFEQF--SKSSEHKKHHADEMYNIDMCNKGE- 1855
Query: 1968 AAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNE 2027
E LW++ S+P+++ E F EK++ + KLSK W+ I G E TC E
Sbjct: 1856 ---FETLWNITSNPNLVSECFAHEKVHLLHCFDRKLSKRWTDIYNGTTRPEE---TCSRE 1909
Query: 2028 DKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKRNGELFEAL 2087
L ++ AS +GS K L R+ RT S K+ ++V+PFQ PKEI +RNGEL EAL
Sbjct: 1910 GALINSSASDTIGSPGK-LLRSGRTLVSS-EKELATLDDVMPFQKPKEIYRRNGELLEAL 1967
Query: 2088 CVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWP--QNGWAGSESTPVPT 2145
C+NS+D RQ A+ASN+KGI+FF+ ED + D+ YIW++++WP NGWAGSESTP PT
Sbjct: 1968 CINSVDGRQAALASNKKGIIFFSWEDGMASRDEEDYIWSNSEWPLNLNGWAGSESTPAPT 2027
Query: 2146 FVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQD 2205
V PGVGLG+NKGAHLGLGGAT+GVGS ARPGRDLTGG AFGI GYAG+GAS LGWETQ+
Sbjct: 2028 CVFPGVGLGTNKGAHLGLGGATVGVGSPARPGRDLTGGGAFGISGYAGMGASGLGWETQE 2087
Query: 2206 DFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265
DFE++VDPPAT E+ STRAFSSHP RP FLVGS+NTH+YLWEFGKD+ATATYGVLPAANV
Sbjct: 2088 DFEEFVDPPATAEHTSTRAFSSHPSRPLFLVGSTNTHVYLWEFGKDRATATYGVLPAANV 2147
Query: 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS 2325
PPPYALASIS++QFD GHRFA+AALDGTVC+WQLEVGGRSNV P ES LCF+ HA DV+
Sbjct: 2148 PPPYALASISSVQFDQCGHRFATAALDGTVCSWQLEVGGRSNVCPTESSLCFNGHASDVT 2207
Query: 2326 YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367
Y+TSSGS+IA AG+SS+ +NVV+WDTLAPP +S+A+I CHEG
Sbjct: 2208 YVTSSGSIIAVAGYSSSAVNVVIWDTLAPPKTSQAAIMCHEG 2249
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184951|ref|NP_182179.3| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] gi|330255627|gb|AEC10721.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2112 bits (5472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1172/2417 (48%), Positives = 1516/2417 (62%), Gaps = 137/2417 (5%)
Query: 6 SGCSLQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLV 65
SG + +P D +HLPL LRSE +P APTRS S+IDWLPDFA YSW+AYGAS+L+V
Sbjct: 10 SGLERGSGDPRTDRIDHLPLRQLRSEIVPPAPTRSQSSIDWLPDFANYSWLAYGASTLVV 69
Query: 66 ISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAH 125
ISH PSPL E++ GP FRQ+ +S PVT++ WSP TPS+G+LA S N IF+FA
Sbjct: 70 ISHLPSPLRGEDSTNGPFFRQILEVSGE--PVTAVCWSPVTPSVGELAVGSGNYIFLFAR 127
Query: 126 DSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKE 185
D KGSFCWSQNAILVQ T VEAIEWTGSGDGI+ GG + VLWK++N WEIAWKF
Sbjct: 128 DL---KGSFCWSQNAILVQETIVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSG 184
Query: 186 NYPQNLVSATWSIEGPSATAASMSQLDLLGPKE---AGKCVFICCSDGKSEYIKLELCHP 242
++ Q+LVS+TWS EGP ATA S + P E AGK V SDG+S Y EL HP
Sbjct: 185 DHLQDLVSSTWSFEGPFATATSWRKF----PAECDDAGKSVLAYYSDGES-YHNFELPHP 239
Query: 243 QPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKT 302
Q +SM+QWRP S +S R+VL+TCCLDG VRLWCE+D GKT+K KD DHK
Sbjct: 240 QRISMIQWRPMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHK- 298
Query: 303 IRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKC 362
+SFCV A+IEINQ L+G LG D+ + W +F+T EG N S Y++ GKC
Sbjct: 299 --KSFCVAAVIEINQVLDGCLGRDLFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKC 356
Query: 363 EWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNLELEHPHNSGFSGFQGQS---L 419
EWLVGYGPG+ TLWA+HCLDDISP+RFPRVTLW KQ + + G S
Sbjct: 357 EWLVGYGPGNFATLWAVHCLDDISPMRFPRVTLWAKQESNEIGAGSLSLASATGSSDRLP 416
Query: 420 LNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSA 479
L KV + R+ + G P ICS ++LS N++ WS LH +S D ED S +KSS +L C
Sbjct: 417 LKKVSVLRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSS---LLKCID 473
Query: 480 SRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWK 539
++L ++GH GKILQVA P V E SLDSNGL++ S S N + P + SWK
Sbjct: 474 GKVLYLDGHGGKILQVASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWK 533
Query: 540 LCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCT 599
CG+L+ ++ YTSL WAPS L ++ LL+GHVGG+DCF V+ D + HY+CT
Sbjct: 534 PCGRLQNQEFRLKYTSLCWAPSSLKDERFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICT 593
Query: 600 IPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKG--LESLSWEITFHSFDL 657
IPFT + + GP +IF+ PL + KT N+F+LL VW+K ++LSW +T H FD
Sbjct: 594 IPFTVNSPLQSGPTSIFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFDALSWSVTLHHFDT 653
Query: 658 SESCCGC-IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPN 716
+ S C C D +++ FE TF GK + + CSS+ PE H + VTSFAVV P+
Sbjct: 654 AGSTCDCHFHDFDSIGLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPS 713
Query: 717 NLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQ 776
+N S+ YT+ATG +DGSL+LWRS SST WELVGML Q
Sbjct: 714 GRD-------LENGVNSESQAYTIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQ 766
Query: 777 GPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVN 836
PVSAISLTD G KIA + SHS A V IWE V + + G F+LED + D +VAV
Sbjct: 767 NPVSAISLTDSGHKIAALCTESHSKAARAVSIWEIVHLIDSGVFILEDKVHVDAEVVAVR 826
Query: 837 WLTLENGQSLLGVCLQNELKVY--AQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-HD 893
W T N Q LLGVC Q E++VY A++ S + Q W C A + TF+A HD
Sbjct: 827 WSTTGNDQLLLGVCTQIEMRVYGIARQPCKSTSFAAYDYSSEAQIWQCFAVTRTFSAIHD 886
Query: 894 FTWGRRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIF 953
WG +A+ +VH Y+S++ Q+L ++DKK + +F N N+V+
Sbjct: 887 LWWGPKAMTCLVHNDYISLHGQWLAVVDKKQKIDNYPEIFASNL--------PNLVNATE 938
Query: 954 TVCDSESSAGDQRGDYESA------------PSVNIDMKNDHLVASDQLKCGGAILGS-- 999
DSE + D A PS + + + + + + G GS
Sbjct: 939 EGRDSEFLSDSGTNDINEADTTSTSRGCIPLPSTSNAIDDGQV---NSMSLIGTAYGSNT 995
Query: 1000 ----WSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYC 1055
SM + EKL G+LP+YHP AL + I SGNWKRA ++RHL E + S+ SEK Y
Sbjct: 996 IDDIMSMGHMVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAEYITSSDTSEKGYA 1055
Query: 1056 YTKSSHIVPQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQF------AYNMDLD 1109
S + P ILLS Y+EG LS G FQW G T + LQ+ QF +NM+
Sbjct: 1056 V--KSVLCPDILLSKYYEGSLSNGPNPKDFQWGG--TSGSMLQYSQFQSGLQSKFNMESY 1111
Query: 1110 ASNSSSSTKSELSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDE 1169
+ NS + T E SGF E L+ + + ++ E ++ A+VDLL E N HS SVY +LDE
Sbjct: 1112 SPNSPA-TDLEFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDE 1170
Query: 1170 PGQRFWVELRFQLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWP 1229
PG+RFWV LRF+ L R GK S EEL +DS +I WAFHSE QE L GS+LPNE +W
Sbjct: 1171 PGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNESSWQ 1230
Query: 1230 EMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKD 1289
+MR+ G GFWY++ QLR+RMEKLAR QYLK K+PKDCALLYIALNR+QVLAGLFK+SKD
Sbjct: 1231 QMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKD 1290
Query: 1290 EKDKPLVGFLSRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNL 1349
EKDKPLV FLSRNFQEEKNKAAALKNAYVL+G+HQLELAI FFLLGG+A+SA+ VC +NL
Sbjct: 1291 EKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNL 1350
Query: 1350 GDVQLALVICRLVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTML 1409
D QLALVICRL++ GG LE NL+ K+ILPS+++RGD+WL SLL+WELG Y +S L M
Sbjct: 1351 QDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMA 1410
Query: 1410 GFQSTAVINNFALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRAT 1469
G + +SSN V+F+DPSIGLYCLMLA KNS++NA+GE+ A+ L RWA+LM AT
Sbjct: 1411 GCLENPATESSTVSSNHVSFVDPSIGLYCLMLATKNSVKNALGERTASTLSRWASLMAAT 1470
Query: 1470 ALNRCGLPLEALDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVA 1529
A +RCGLPLEAL+CLS S S GGT Q SV + G H + S SSNW+ V+
Sbjct: 1471 AFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHTTQGVFDHSVPH-SSNWVSSGVS 1529
Query: 1530 LHLESCAKLDLSLQYFSKLIRDHPSWPDLGFGRASKCFMDFEIHQYEKLVQNFQQKLYTA 1589
+++ +L L++Q+ S ++R+ A+ M+ E+ EK + FQ KL TA
Sbjct: 1530 STVDTHFRLGLAVQFLSMILRE-----------ATAPLMNSEVVSCEKFSR-FQHKLQTA 1577
Query: 1590 LAFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYF 1649
L F QRFS+ +S L ++ N GLL +G+++ G S +KS D L Y
Sbjct: 1578 LEQFHQRFSLSASYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHTDEDLLQ-YS 1636
Query: 1650 CQHKPLLKAAEDISIFLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSII 1709
K +LKA ++ S+ LSR IAA S+TC H EN +WSNA +YFQ I+
Sbjct: 1637 ALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGPDPKWSNALRFYFQGIL 1696
Query: 1710 FSLWSLRAAMRTFSGSFPEELITPL-FLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLIT 1768
S +LR ++R GS E+L T L +LDL EY + A AW+ D L +++QP++I+
Sbjct: 1697 ESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFRMVQPLVIS 1756
Query: 1769 YTNGHTPYEVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPED 1828
Y NGH PYEVD+ ++K +HQ A + + S ++ + + S V++ + SIPED
Sbjct: 1757 YFNGHMPYEVDLESVKRVYHQEASVSVPDAS--DVGVNSKFSSVVENHGVGYPVYSIPED 1814
Query: 1829 ERWQIMGACLWQHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLK 1888
ER + AC W+H+S F+K KL S+S+ LD+ S+ + + TS ++ + + K
Sbjct: 1815 ERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDIVCVTEK 1874
Query: 1889 EQMRLLTLFLAQLLKSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTL 1948
+ L + L S L +SS+HVKQL L+ K+E +PT WL E SQ+
Sbjct: 1875 -----IMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLECQGSQA--- 1926
Query: 1949 YQHLNQIVVSMNIINNKD-EAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGW 2007
LN+ + + K+ + +S W +C DP ++HE F E + + K + W
Sbjct: 1927 -NFLNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDW 1985
Query: 2008 SHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEV 2067
S + V K+E+ C + + +S EV S + S +SP++ A ANE
Sbjct: 1986 SDMYREVIRKNELYVPCNQDGR-----SSNEVASLAN---HASNSSPKA----AVTANEN 2033
Query: 2068 IPFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWAD 2127
FQ PKEI KR GEL EALC+N+I+ RQ A+ASNRKGI+FFNLED +Q YIW+D
Sbjct: 2034 SAFQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSD 2093
Query: 2128 ADWPQNGWAGSESTPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFG 2187
ADWP NGWA SESTPVPT VS GVGLG KGAHLGLGGAT+GV SL++PG+ A
Sbjct: 2094 ADWPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGK------ADR 2147
Query: 2188 IPGYAGIGA-----------------SALGWETQDDFEDYVDPPATVENISTRAFSSHPL 2230
+PGY+G+GA S LGWETQ++FE++VDPP TVE++ TRAFS+HP
Sbjct: 2148 VPGYSGLGAIADPGSFFTQIRRWLGVSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPT 2207
Query: 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290
P FLVGSSNTHIYLWEFG ++ATATYGVLPAANV PPYALASISA+QF +GHRFASAA
Sbjct: 2208 MPLFLVGSSNTHIYLWEFGNERATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAA 2267
Query: 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350
LDGTVCTWQ EVGGRSN+ P+ES LCF+ HA DV YI+SSGS++AA+G+SS+G NVVVWD
Sbjct: 2268 LDGTVCTWQSEVGGRSNIHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWD 2327
Query: 2351 TLAPPTSSRASITCHEG 2367
TLAPP++S+ASI CHEG
Sbjct: 2328 TLAPPSTSQASINCHEG 2344
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4415937|gb|AAD20167.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2077 bits (5381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1156/2400 (48%), Positives = 1493/2400 (62%), Gaps = 145/2400 (6%)
Query: 6 SGCSLQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLV 65
SG + +P D +HLPL LRSE +P APTRS S+IDWLPDFA YSW+AYGAS+L+V
Sbjct: 10 SGLERGSGDPRTDRIDHLPLRQLRSEIVPPAPTRSQSSIDWLPDFANYSWLAYGASTLVV 69
Query: 66 ISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAH 125
ISH PSPL E++ GP FRQ+ +S PVT++ WSP TPS+G+LA S N IF+FA
Sbjct: 70 ISHLPSPLRGEDSTNGPFFRQILEVSGE--PVTAVCWSPVTPSVGELAVGSGNYIFLFAR 127
Query: 126 DSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKE 185
D KGSFCWSQNAILVQ T VEAIEWTGSGDGI+ GG + VLWK++N WEIAWKF
Sbjct: 128 DL---KGSFCWSQNAILVQETIVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSG 184
Query: 186 NYPQNLVSATWSIEGPSATAASMSQLDLLGPKE---AGKCVFICCSDGKSEYIKLELCHP 242
++ Q+LVS+TWS EGP ATA S + P E AGK V SDG+S Y EL HP
Sbjct: 185 DHLQDLVSSTWSFEGPFATATSWRKF----PAECDDAGKSVLAYYSDGES-YHNFELPHP 239
Query: 243 QPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKT 302
Q +SM+QWRP S +S R+VL+TCCLDG VRLWCE+D GKT+K KD DHK
Sbjct: 240 QRISMIQWRPMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHK- 298
Query: 303 IRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKC 362
+SFCV A+IEINQ L+G LG D+ + W +F+T EG N S Y++ GKC
Sbjct: 299 --KSFCVAAVIEINQVLDGCLGRDLFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKC 356
Query: 363 EWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNLELEHPHNSGFSGFQGQS---L 419
EWLVGYGPG+ TLWA+HCLDDISP+RFPRVTLW KQ + + G S
Sbjct: 357 EWLVGYGPGNFATLWAVHCLDDISPMRFPRVTLWAKQESNEIGAGSLSLASATGSSDRLP 416
Query: 420 LNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSA 479
L KV + R+ + G P ICS ++LS N++ WS LH +S D ED S +KSS +L C
Sbjct: 417 LKKVSVLRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSS---LLKCID 473
Query: 480 SRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWK 539
++L ++GH GKILQVA P V E SLDSNGL++ S S N + P + SWK
Sbjct: 474 GKVLYLDGHGGKILQVASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWK 533
Query: 540 LCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCT 599
CG+L+ ++ YTSL WAPS L ++ LL+GHVGG+DCF V+ D + HY+CT
Sbjct: 534 PCGRLQNQEFRLKYTSLCWAPSSLKDERFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICT 593
Query: 600 IPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKG--LESLSWEITFHSFDL 657
IPFT + + GP +IF+ PL + KT N+F+LL VW+K ++LSW +T H FD
Sbjct: 594 IPFTVNSPLQSGPTSIFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFDALSWSVTLHHFDT 653
Query: 658 SESCCGC-IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPN 716
+ S C C D +++ FE TF GK + + CSS+ PE H + VTSFAVV P+
Sbjct: 654 AGSTCDCHFHDFDSIGLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPS 713
Query: 717 NLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQ 776
+N S+ YT+ATG +DGSL+LWRS SST WELVGML Q
Sbjct: 714 GRD-------LENGVNSESQAYTIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQ 766
Query: 777 GPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVN 836
PVSAISLTD G KIA + SHS A V IWE V + + G F+LED + D +VAV
Sbjct: 767 NPVSAISLTDSGHKIAALCTESHSKAARAVSIWEIVHLIDSGVFILEDKVHVDAEVVAVR 826
Query: 837 WLTLENGQSLLGVCLQNELKVY--AQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-HD 893
W T N Q LLGVC Q E++VY A++ S + Q W C A + TF+A HD
Sbjct: 827 WSTTGNDQLLLGVCTQIEMRVYGIARQPCKSTSFAAYDYSSEAQIWQCFAVTRTFSAIHD 886
Query: 894 FTWGRRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIF 953
WG +A+ +VH Y+S++ Q+L ++DKK + +F N N+V+
Sbjct: 887 LWWGPKAMTCLVHNDYISLHGQWLAVVDKKQKIDNYPEIFASNL--------PNLVNATE 938
Query: 954 TVCDSESSAGDQRGDYESA------------PSVNIDMKNDHLVASDQLKCGGAILGS-- 999
DSE + D A PS + + + + + + G GS
Sbjct: 939 EGRDSEFLSDSGTNDINEADTTSTSRGCIPLPSTSNAIDDGQV---NSMSLIGTAYGSNT 995
Query: 1000 ----WSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYC 1055
SM + EKL G+LP+YHP AL + I SGNWKRA ++RHL E + S+ SEK Y
Sbjct: 996 IDDIMSMGHMVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAEYITSSDTSEKGYA 1055
Query: 1056 YTKSSHIVPQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQF------AYNMDLD 1109
S + P ILLS Y+EG LS G FQW G T + LQ+ QF +NM+
Sbjct: 1056 V--KSVLCPDILLSKYYEGSLSNGPNPKDFQWGG--TSGSMLQYSQFQSGLQSKFNMESY 1111
Query: 1110 ASNSSSSTKSELSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDE 1169
+ NS + T E SGF E L+ + + ++ E ++ A+VDLL E N HS SVY +LDE
Sbjct: 1112 SPNSPA-TDLEFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDE 1170
Query: 1170 PGQRFWVELRFQLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWP 1229
PG+RFWV LRF+ L R GK S EEL +DS +I WAFHSE QE L GS+LPNE +W
Sbjct: 1171 PGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNESSWQ 1230
Query: 1230 EMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKD 1289
+MR+ G GFWY++ QLR+RMEKLAR QYLK K+PKDCALLYIALNR+QVLAGLFK+SKD
Sbjct: 1231 QMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKD 1290
Query: 1290 EKDKPLVGFLSRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNL 1349
EKDKPLV FLSRNFQEEKNKAAALKNAYVL+G+HQLELAI FFLLGG+A+SA+ VC +NL
Sbjct: 1291 EKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNL 1350
Query: 1350 GDVQLALVICRLVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTML 1409
D QLALVICRL++ GG LE NL+ K+ILPS+++RGD+WL SLL+WELG Y +S L M
Sbjct: 1351 QDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMA 1410
Query: 1410 GFQSTAVINNFALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRAT 1469
G + +SSN V+F+DPSIGLYCLMLA KNS++NA+GE+ A+ L RWA+LM AT
Sbjct: 1411 GCLENPATESSTVSSNHVSFVDPSIGLYCLMLATKNSVKNALGERTASTLSRWASLMAAT 1470
Query: 1470 ALNRCGLPLEALDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVA 1529
A +RCGLPLEAL+CLS S S GGT Q SV + G H + S SSNW+ V+
Sbjct: 1471 AFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHTTQGVFDHSVPH-SSNWVSSGVS 1529
Query: 1530 LHLESCAKLDLSLQYFSKLIRDHPSWPDLGFGRASKCFMDFEIHQYEKLVQNFQQKLYTA 1589
+++ +L L++Q+ S ++R+ A+ M+ E+ EK + FQ KL TA
Sbjct: 1530 STVDTHFRLGLAVQFLSMILRE-----------ATAPLMNSEVVSCEKFSR-FQHKLQTA 1577
Query: 1590 LAFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYF 1649
L F QRFS+ +S L ++ N GLL +G+++ G S +KS D L Y
Sbjct: 1578 LEQFHQRFSLSASYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHTDEDLLQ-YS 1636
Query: 1650 CQHKPLLKAAEDISIFLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSII 1709
K +LKA ++ S+ LSR IAA S+TC H EN +WSNA +YFQ I+
Sbjct: 1637 ALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGPDPKWSNALRFYFQGIL 1696
Query: 1710 FSLWSLRAAMRTFSGSFPEELITPL-FLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLIT 1768
S +LR ++R GS E+L T L +LDL EY + A AW+ D L +++QP++I+
Sbjct: 1697 ESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFRMVQPLVIS 1756
Query: 1769 YTNGHTPYEVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPED 1828
Y NGH PYEVD+ ++K +HQ A + + S ++ + + S V++ + SIPED
Sbjct: 1757 YFNGHMPYEVDLESVKRVYHQEASVSVPDAS--DVGVNSKFSSVVENHGVGYPVYSIPED 1814
Query: 1829 ERWQIMGACLWQHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLK 1888
ER + AC W+H+S F+K KL S+S+ LD+ S+ + + TS ++ + + K
Sbjct: 1815 ERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDIVCVTEK 1874
Query: 1889 EQMRLLTLFLAQLLKSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTL 1948
+ L + L S L +SS+HVKQL L+ K+E +PT WL E SQ+
Sbjct: 1875 -----IMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLECQGSQA--- 1926
Query: 1949 YQHLNQIVVSMNIINNKD-EAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGW 2007
LN+ + + K+ + +S W +C DP ++HE F E + + K + W
Sbjct: 1927 -NFLNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDW 1985
Query: 2008 SHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEV 2067
S + V K+E+ C + + +S EV S + S +SP++ A ANE
Sbjct: 1986 SDMYREVIRKNELYVPCNQDGR-----SSNEVASLAN---HASNSSPKA----AVTANEN 2033
Query: 2068 IPFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWAD 2127
FQ PKEI KR GEL EALC+N+I+ RQ A+ASNRKGI+FFNLED +Q YIW+D
Sbjct: 2034 SAFQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSD 2093
Query: 2128 ADWPQNGWAGSESTPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFG 2187
ADWP NGWA SESTPVPT VS GVGLG KGAHLGLG
Sbjct: 2094 ADWPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLG----------------------- 2130
Query: 2188 IPGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWE 2247
S LGWETQ++FE++VDPP TVE++ TRAFS+HP P FLVGSSNTHIYLWE
Sbjct: 2131 --------VSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPTMPLFLVGSSNTHIYLWE 2182
Query: 2248 FGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307
FG ++ATATYGVLPAANV PPYALASISA+QF +GHRFASAALDGTVCTWQ EVGGRSN
Sbjct: 2183 FGNERATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAALDGTVCTWQSEVGGRSN 2242
Query: 2308 VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367
+ P+ES LCF+ HA DV YI+SSGS++AA+G+SS+G NVVVWDTLAPP++S+ASI CHEG
Sbjct: 2243 IHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWDTLAPPSTSQASINCHEG 2302
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828387|ref|XP_002882076.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297327915|gb|EFH58335.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2070 bits (5364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1149/2379 (48%), Positives = 1481/2379 (62%), Gaps = 135/2379 (5%)
Query: 18 DPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEE 77
DP ++LPL +RSE +P AP RS S+IDWLPDFAGYSW+AYGAS+LLVISH PSPL E+
Sbjct: 18 DPIDNLPLRQIRSEIVPPAPNRSQSSIDWLPDFAGYSWLAYGASTLLVISHLPSPLRGED 77
Query: 78 ALIGPIFRQVFALS-DNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKGSFCW 136
+ GP FRQ+ +S D S PVTS+SWSP TPS+G+LA S N IF+FA DS++ GSFCW
Sbjct: 78 STNGPFFRQILEVSGDVSSPVTSVSWSPVTPSVGELAVGSGNYIFLFARDSSALNGSFCW 137
Query: 137 SQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLVSATW 196
SQNAILVQ TKVEAIEWTGSGDGI+ GG + VLWK++N WEIAWKF ++ Q+LVS+TW
Sbjct: 138 SQNAILVQETKVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSGDHLQDLVSSTW 197
Query: 197 SIEGPSATAASMSQL-DLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTR 255
S EGP ATA S +L D G EAGK V SDG+S Y K EL HPQ +SM+QWRP
Sbjct: 198 SFEGPFATATSWRKLPDECG--EAGKSVLAYYSDGES-YHKFELPHPQRISMIQWRPMAA 254
Query: 256 RHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTIRRSFCVGAIIEI 315
S +S R++L+TCCLDG VRLW E+D GKT+K KD DHK +SFCV A+IEI
Sbjct: 255 EQSAIGIGKSMRNLLMTCCLDGAVRLWSEVDGGKTKKGMKDVPDHK---KSFCVAAVIEI 311
Query: 316 NQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEWLVGYGPGSLVT 375
NQ L+G LG D+ + W + +T EG N F S Y+H GKCEWLVGYGPG+L T
Sbjct: 312 NQVLDGCLGRDLFLFWGTRTGGILKTTEGTNQFFSMEKYDHENVGKCEWLVGYGPGNLAT 371
Query: 376 LWAIHCLDDISPLRFPRVTLWKKQNLELEHPHNSGFSGFQGQS---LLNKVVISRDCVSG 432
LWA+HCLDDISP+RFPRVTLW KQ + + G S L KV + R+ + G
Sbjct: 372 LWAVHCLDDISPMRFPRVTLWAKQESNEIGAVSLSLADATGSSDRLPLKKVSVLRNNLYG 431
Query: 433 LPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSASRILSIEGHTGKI 492
P ICS ++LS N++ WS LH +S D ED S +KSS +L C ++L + GH GKI
Sbjct: 432 TPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSS---LLKCIDGKVLYLNGHGGKI 488
Query: 493 LQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTRKSCSN 552
LQVA P + E SLDSNGL++ WS ST N D P + SWK CG L+ ++
Sbjct: 489 LQVAFDPFIGEAGYTASLDSNGLIIIWSSSTYLNRAIDHPISVASWKPCGWLQNQEFRLK 548
Query: 553 YTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGP 612
YTSL WAPS L ++ LL+GH GG+DCF V+ D + HY+CTIP + + GP
Sbjct: 549 YTSLCWAPSSLKDERFLLVGHAGGVDCFSVRNCGKGDDGYLTHYICTIPSAVNSPLQSGP 608
Query: 613 ANIFSVPLPSCNDKTVMYNKFMLLGVWLK--GLESLSWEITFHSFDLSESCCGC-IDDNN 669
+IF+ PL + KT N+F+LL VW+K ++LSW +T H FD + S C C D +
Sbjct: 609 TSIFARPLSNSCGKTFKSNRFLLLSVWMKEKQFDALSWSVTLHHFDTAGSTCVCHFHDFD 668
Query: 670 TVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDN 729
+ FE TF GKK I + CSS+ PE H + VTSFAVV P+ +N
Sbjct: 669 STGLGKWLFEDTFAGKKNCIAIRSCSSEIPESHRDDEVTSFAVVNPSGRA-------IEN 721
Query: 730 DPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGR 789
S+ YTMATG +DGSL++WRS SST C+PWELVGML Q PVSAI LTD G
Sbjct: 722 VMNSESQAYTMATGQADGSLKIWRSSFQESSTPCVPWELVGMLTIGQNPVSAIFLTDSGH 781
Query: 790 KIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQSLLGV 849
KIA + +HS A + IWE + + + G F+LED L D +VAV W N Q LLGV
Sbjct: 782 KIAALCTENHSKATCTISIWEIIHLIDSGVFILEDKLHVDAEVVAVRWSIASNDQLLLGV 841
Query: 850 CLQNELKVY--AQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAAH-DFTWGRRAIAIVVH 906
C Q EL+VY A++ + S + Q W C A + TF+A D WG +A+ +VH
Sbjct: 842 CTQKELRVYGIARQSCKSTSFAVSDYSSEAQIWQCFAVTHTFSAICDLWWGPKAMTCLVH 901
Query: 907 QSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAGDQR 966
Y+S++ Q+L ++DKK + +F N N+V+ SE +
Sbjct: 902 NDYISLHGQWLAVVDKKQKIDNYPEIFAANL--------PNLVNATEEGRGSELLSDSGT 953
Query: 967 GDYESAPSVNI-----------DMKNDHLVASDQLKCGGAILGS------WSMLEIAEKL 1009
D + A + I + +D V S L G GS SM + EKL
Sbjct: 954 NDIKEADTAYISRGCIPLPSTSNAIDDGQVNSMSLI--GTAYGSDTINEIMSMGHMVEKL 1011
Query: 1010 RGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLS 1069
G+LP+YHP+AL + I+SGNWKRA ++RHL E + S+ SEK YT S + P ILLS
Sbjct: 1012 GGALPLYHPQALLVAIHSGNWKRASAALRHLSEYITSSDASEK--VYTVKSVLCPDILLS 1069
Query: 1070 TYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFVELLQ 1129
Y+EG LS G FQW G + S +++ + A T E SGF E L+
Sbjct: 1070 KYYEGSLSTGPNPKDFQWGGTSGSSFNMESYSPNSSHSSPA------TDLEFSGFCEQLK 1123
Query: 1130 NVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRF 1189
+ + ++ EK++ A+ DLL E N HS SVY +LDE G+RFWV LRF+ L R
Sbjct: 1124 KLSDGGNISRIEKLQYFAIADLLCEISNPHSTSVYASLDEAGRRFWVTLRFKQLFLARSS 1183
Query: 1190 GKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTR 1249
GK S EEL +DS +I WAFHSE QE L GS+LPNE +W +MR+LG GFWY++V QLR+R
Sbjct: 1184 GKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNEASWQQMRSLGFGFWYSNVAQLRSR 1243
Query: 1250 MEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNK 1309
MEKLAR QYLK K+PKDCALLYIALNR+QVLAGLFK+SKDEKDKPLV FLSRNFQEEKNK
Sbjct: 1244 MEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKDEKDKPLVVFLSRNFQEEKNK 1303
Query: 1310 AAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPL 1369
AAALKNAYVL+G+HQLELAI FFLLGG+A+SA+ VC +NL D QLALVICRL++ GG L
Sbjct: 1304 AAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNLQDEQLALVICRLIDGQGGAL 1363
Query: 1370 ERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAF 1429
E NL+ K+ILPS+++RGD+WL SLL+WELG Y QS M G V + +SSN ++F
Sbjct: 1364 ESNLIKKYILPSAVQRGDFWLASLLKWELGEYHQSIFAMAGCLGNPVTESSTVSSNHISF 1423
Query: 1430 MDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSPS 1489
+DPSIGLYCLMLA KN+++NA+GEK A+ L RWA LM ATA +RCGLPLEAL+CLS+S S
Sbjct: 1424 VDPSIGLYCLMLATKNNVKNAVGEKIASTLSRWATLMAATAFSRCGLPLEALECLSASAS 1483
Query: 1490 TIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLI 1549
GGT Q S + G P+ + + SSNW+ V+ +++ +L L++Q+ S+++
Sbjct: 1484 GHGGTHQTSDPSNGQLRT-PKGVFDHSVPHSSNWVSSGVSSAVDTHFRLGLAVQFLSRIL 1542
Query: 1550 RDHPSWPDLGFGRASKCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKIL 1609
R+ A+ M+ EI EK + FQ +L TAL F QRFS+ SS L ++
Sbjct: 1543 RE-----------ATAPLMNSEIVSCEK-ISRFQHELETALEQFYQRFSLSSSYLRNMMI 1590
Query: 1610 SLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISIFLSRF 1669
N GLL +G+++ G S +KS T + + Y K +LKA E+ S LSR
Sbjct: 1591 LSAYNRGLLSMGHNIFQENSSSGLSDDKS-HTDEDIFQYSALSKLILKATEEKSFVLSRI 1649
Query: 1670 IAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEE 1729
IA S+TC H EN +WSNA +YFQ I+ S +LR ++R S E+
Sbjct: 1650 IATCSVTCLHSVPWFEENKVSSGPEPKWSNALRFYFQGILESFSNLRTSLRLCLSSSVED 1709
Query: 1730 LITPL-FLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFH 1788
L T L + DL EY A AW+ D L +++QP++I Y +GH PYEVD+ ++K +H
Sbjct: 1710 LKTRLAVVFDLVEYCSRLAIAWVLGDVNCLFRMVQPLVIAYFHGHIPYEVDLESVKRVYH 1769
Query: 1789 QSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHMSRFMKH 1848
Q A + S ++ + +VS+ V++ + SIPEDER + AC W+H+S F+KH
Sbjct: 1770 QEASASVPDAS--DVGVNSKVSRDVENYEVGYPVYSIPEDERCLVTQACFWKHVSDFVKH 1827
Query: 1849 KLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQMRLLTLFLAQLLKSALLH 1908
KL S+S+ LD+ S+ + + TS ++ + + K + L + L S L
Sbjct: 1828 KLGSISINLDDGISNNGSPENFDAQTSLDSSDDIVCVTEK-----IMSVLGKTLISTLAQ 1882
Query: 1909 ISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDEA 1968
+SS+HVKQL L+ K+E +PT WL E SQ+ L + + + N +
Sbjct: 1883 LSSYHVKQLVLVLKPKLEKKIQVPTLLWLLECRGSQANFLKRDIPDAGIENE---NNGDP 1939
Query: 1969 AISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNED 2028
+S W +C DP +++E F E + + K + WS + V K+E+ C +
Sbjct: 1940 VVSVRFWKLCVDPHLLYEAFLLENFDIFEWSKSKPLEYWSDMYREVTRKNELHVPCNQDG 1999
Query: 2029 KLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKRNGELFEALC 2088
+ +S EV S + +S+ K A ANE FQ PKEI KR GEL EALC
Sbjct: 2000 R-----SSNEVASLASHASNSSQ-------KAAITANENSAFQNPKEIHKRTGELIEALC 2047
Query: 2089 VNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTPVPTFVS 2148
+N+I+ R A+ASNRKGI+FFNLED +Q YIW+DADWP NGWA SESTPVPT VS
Sbjct: 2048 INAINHRLAALASNRKGIIFFNLEDVDSCKNQSDYIWSDADWPHNGWANSESTPVPTCVS 2107
Query: 2149 PGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFE 2208
GVGLG KGAHLGLG WETQ++FE
Sbjct: 2108 LGVGLGDKKGAHLGLG------------------------------------WETQEEFE 2131
Query: 2209 DYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268
++VDPP TVE + TRAFS+HP P FLVGSSNTHIYLWEFGKD+ATATYGVLPAANVPPP
Sbjct: 2132 EFVDPPPTVETVITRAFSNHPTMPLFLVGSSNTHIYLWEFGKDRATATYGVLPAANVPPP 2191
Query: 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYIT 2328
YALASISA+QF GHRFASAALDGTVCTWQ EVG RSN+ P+ES LCF+ HA DV YI+
Sbjct: 2192 YALASISAVQFGPCGHRFASAALDGTVCTWQSEVGERSNIHPVESSLCFNGHASDVEYIS 2251
Query: 2329 SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367
SSGS++AA+G+SS+G NVVVWDTLAPP++S+ASI CHEG
Sbjct: 2252 SSGSIVAASGYSSSGTNVVVWDTLAPPSTSQASINCHEG 2290
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560264|ref|XP_003548413.1| PREDICTED: uncharacterized protein LOC100795225 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1717 bits (4447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 906/1689 (53%), Positives = 1149/1689 (68%), Gaps = 42/1689 (2%)
Query: 17 VDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQE 76
++P +HLPL LRS+ +P APT S ST+D+LPDF+GYSW+AY ASSLL ISHFPSPLS
Sbjct: 7 MNPIDHLPLRLLRSDTVPPAPTLSESTVDFLPDFSGYSWIAYAASSLLTISHFPSPLSPH 66
Query: 77 EALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKGSFCW 136
+ IGPIFRQ F LS + P+ +++WSP +PS G LAAA++NCI +F HDSA++KGSFCW
Sbjct: 67 QTRIGPIFRQSFQLSAD--PLAAVAWSPSSPSSGDLAAAADNCISLFRHDSATAKGSFCW 124
Query: 137 SQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLVSATW 196
SQNA+LVQ TKV I WTGSGDGI++ GME V WKK N WE+AWKFK + PQ LV ATW
Sbjct: 125 SQNAVLVQHTKVANIRWTGSGDGIISVGMEVVFWKKSNKCWEVAWKFKADQPQTLVCATW 184
Query: 197 SIEGPSATAASMSQLDLLGP--KEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPST 254
IEGPSATAA S+ + G E KCV +C S+G SEY K++L HP PV M+QWRPS
Sbjct: 185 FIEGPSATAAHPSKEHIEGSLTNEKSKCVLVCQSNGLSEYSKVKLHHPLPVVMIQWRPSR 244
Query: 255 RRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTIRRSFCVGAIIE 314
+ S K S RHVLLTC LDGT RLW E+D+GK R+ KD ND K SFCV A+IE
Sbjct: 245 GKLSNRYGKCSVRHVLLTCSLDGTARLWSEIDNGKARRTGKDINDQKNTGCSFCVVAVIE 304
Query: 315 INQALNGALGMDIVITWAKEIRCMFETGE-GANHFISTGVYEHGGTGKCEWLVGYGPGSL 373
INQ+LNG LG DI + W + +F TGE A S +EH C+WLVG+GPG L
Sbjct: 305 INQSLNGTLGSDIFVRWGTDFEGIFRTGEEAAKQVFSKEGFEHD-VRNCDWLVGFGPGML 363
Query: 374 VTLWAIHCLDDISPLRFPRVTLWKK---QNLELEHPHNSGFSGFQGQSLLNKVVISRDCV 430
++ WA+ CLDD+SPLRFPRVTLW K QN ++ + + S F+ L+K++I R +
Sbjct: 364 LSFWAVQCLDDVSPLRFPRVTLWNKHEIQNHDIANVYKFNSSDFKNAFFLHKIIILRSSL 423
Query: 431 SGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSASRILSIEGHTG 490
SG P ICS + L CNSLVWS Q D + S D +T I S +L+++GH+G
Sbjct: 424 SGPPIICSSLQLLPCNSLVWSNFRIQMIHDAVEKSIDNVNTDNISSHLTGGVLNLDGHSG 483
Query: 491 KILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTRKSC 550
+IL+V++HPC S+ +LAVSLDSNGLLLFWSLS ISNCI PTL+P+ +L GKL T+ SC
Sbjct: 484 RILKVSLHPCTSKVQLAVSLDSNGLLLFWSLSNISNCILGCPTLVPTMELYGKLATQDSC 543
Query: 551 SNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYED 610
S YTSL WAPS+LD+ +V MGH GIDCFIV I Q+E ++I CHY+CTIPF+GHG YED
Sbjct: 544 SLYTSLTWAPSILDDKLVFFMGHTRGIDCFIVNICQSEEENIECHYLCTIPFSGHGPYED 603
Query: 611 GPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCIDDNNT 670
GP +IF++PL S DKT NK MLL +W+ ++LSWE+ HSFD+S +CC C D +
Sbjct: 604 GPFDIFTIPLNSTCDKTFRNNKLMLLAIWMGRFQALSWEVNLHSFDMSTNCCECNFDVKS 663
Query: 671 V-KCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDN 729
+ CS+ FE+TF KKY I VNPCS +F + + VTSFAV L QQ+ N
Sbjct: 664 IDNCSVWAFESTFANKKYCITVNPCSCEFLS--SNDLVTSFAVADSGTLSHRQQEFGLAN 721
Query: 730 DPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGR 789
D CS P Y +ATG SDG L+LW+S+ G S T +PWELVG VAH GP+ I L D G
Sbjct: 722 DLCSSYPAYILATGSSDGILKLWKSKPGNSLTQHLPWELVGSFVAHDGPIKDICLADCGE 781
Query: 790 KIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQSLLGV 849
KIAT S+SNA++ + IW++V + G+F+LED + +++++A+ WL L G+ LLGV
Sbjct: 782 KIATFCYESNSNAINTIHIWDAVPLISAGTFILEDKIKTESDVIALKWLPLGTGELLLGV 841
Query: 850 CLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPT-FAAHDFTWGRRAIAIVVHQS 908
CLQNEL VYA + G L ++ N K W +A++ T +DF WG RA A+V+H +
Sbjct: 842 CLQNELHVYAPKRCVGTTLSNSVNFPKKNIWVRIAYAHTSIPIYDFLWGPRAAAVVIHGN 901
Query: 909 YLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCD----SESSAGD 964
Y SI+S +LF DK+ +K N + I E+I+S++FT D E S GD
Sbjct: 902 YFSIFSHWLFHEDKRQGSKFRPGDSKPNTYNCEDEIYEDILSSVFTEYDIGAFREQSLGD 961
Query: 965 QRGDYESAPSVNIDMKNDH---LVASDQLKCGGAI-LGSWSMLEIAEKLRGSLPVYHPKA 1020
D++S S I+MK++ +A +QLK +G WS+LE+AE + GSLP YHP
Sbjct: 962 SHADFDSVQSSKINMKDNSSSLFLAKEQLKSELLTKVGLWSILEVAEIISGSLPTYHPDV 1021
Query: 1021 LFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLSTYFEGLLSKGS 1080
L NI SGNWKRAYV+VRHLVE L S Y ++KR+ + +P ILLS Y EG +SKGS
Sbjct: 1022 LITNISSGNWKRAYVAVRHLVECLTS-YDTKKRHISKRIG--LPNILLSYYLEGCISKGS 1078
Query: 1081 TDNGFQWSGLNTFSTSLQ-----FRQFAYNMDLDASNSS--SSTKSELSGFVELLQNVYE 1133
GFQW G T TS+ QF Y+ N S SSTKSEL+GF+E L+ +
Sbjct: 1079 QPKGFQWGGDTTSITSISQAQGSLFQFPYHSGSIVENESISSSTKSELNGFIESLEKFPD 1138
Query: 1134 LAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLV 1193
L + D EKM+ILA++DLL+E + HS+S Y++LDEPG+RFWV LRF L F R+F +
Sbjct: 1139 LPFLIDIEKMQILAIIDLLSEVSSPHSSSAYQSLDEPGRRFWVALRFWQLLFLRKFARAA 1198
Query: 1194 SAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKL 1253
S EEL DSRL WA+HS+C + LFGS++PNEP+W EMRALG+GFWY ++ QLR RMEKL
Sbjct: 1199 SFEELPADSRLFVWAYHSDCLDNLFGSVIPNEPSWQEMRALGMGFWYANIPQLRARMEKL 1258
Query: 1254 ARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAAL 1313
AR QYLK K+PKDCALLYIALNR+QVLAGLFKISKDEKDKPLVGFLSRNFQ+EKNKAAAL
Sbjct: 1259 ARAQYLKNKNPKDCALLYIALNRVQVLAGLFKISKDEKDKPLVGFLSRNFQDEKNKAAAL 1318
Query: 1314 KNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNL 1373
KNAYVLLG+HQLELAIAFFLLGGD +SA+ +CA+NLGD QLALVICRLVE HGG LE +L
Sbjct: 1319 KNAYVLLGKHQLELAIAFFLLGGDHSSAINICAKNLGDEQLALVICRLVEGHGGSLEHHL 1378
Query: 1374 VTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAFMDPS 1433
+TK+ILPS+I++GDYWL SLLEWE+GNY QSF ML F V + SN F+DP+
Sbjct: 1379 ITKYILPSAIDKGDYWLASLLEWEMGNYYQSFYRMLEFSVNPVPWESTVMSNCGPFLDPT 1438
Query: 1434 IGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSPSTIGG 1493
+G YC MLA KNSMRNA+GE+N+AIL RWA LM AL RCG PLEAL+ SSS S
Sbjct: 1439 VGFYCQMLATKNSMRNAVGEQNSAILLRWATLMTVAALKRCGNPLEALEYFSSSLSMSET 1498
Query: 1494 TDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRDHP 1553
DQES L H +L LKP SNWL +V++HLE KL+L+L Y SKLI++HP
Sbjct: 1499 ADQESELGDSHD-VLSSTLKP-LPRKCSNWLSANVSVHLEFHIKLNLALCYLSKLIKEHP 1556
Query: 1554 SWPD-LGFGRASKCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKILSLL 1612
SWPD + D + QY K V++F+QKLYT LA FEQRF + LI+ IL LL
Sbjct: 1557 SWPDTFAEYNGEASYSDEYMMQYAKSVESFKQKLYTGLALFEQRFLLAPHCLISMILLLL 1616
Query: 1613 CNNGLLFIGYDLLHGYICQGKSQEKS--SDTVDG----LSLYFCQHKPLLKAAEDISIFL 1666
++G L+I YD+ G I QG+ E S + ++D L C+ + L+ + +++
Sbjct: 1617 FHHGSLYIRYDMTDGCI-QGELMENSQQNSSIDSKPKFLDALQCRFEAWLQKNSEALLYM 1675
Query: 1667 SR-FIAATS 1674
S F+ A S
Sbjct: 1676 SEPFLVAQS 1684
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522498|ref|XP_003529883.1| PREDICTED: uncharacterized protein LOC100789935 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1716 bits (4443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1710 (53%), Positives = 1158/1710 (67%), Gaps = 67/1710 (3%)
Query: 17 VDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQE 76
++P +HLPL LRS+ +P APT S ST+D+LP F+GYSW+AY ASSLL ISHFPSPLS
Sbjct: 7 MNPIDHLPLRLLRSDTVPPAPTFSESTVDFLPHFSGYSWIAYAASSLLTISHFPSPLSPH 66
Query: 77 EALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKGSFCW 136
+ IGP FRQ F LS + PV +++WSP +PS G LAAA+++CI++F HDSA+ KGSFCW
Sbjct: 67 QTRIGPFFRQSFQLSAH--PVAAVAWSPSSPSSGDLAAAADDCIWLFRHDSAAGKGSFCW 124
Query: 137 SQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLVSATW 196
SQNA+LVQ KV I+WTGSGDGI++ GME V WKK NT WE+AWKFK + PQ LV ATW
Sbjct: 125 SQNAVLVQHMKVANIKWTGSGDGIISVGMEVVFWKKSNTCWEVAWKFKADQPQTLVCATW 184
Query: 197 SIEGPSATAASMSQLDLLGP--KEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPST 254
SIEGPSATAA S+ + G E KCV +C S+G SEY K++L HP PV M+QWRPS
Sbjct: 185 SIEGPSATAAHPSREHIEGTLTNEESKCVLVCQSNGLSEYSKVKLHHPLPVVMIQWRPSR 244
Query: 255 RRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTIRRSFCVGAIIE 314
+ S K S RHVLLTC LDGT RLW E+D+ K R+ AKD ND K SFCV A+IE
Sbjct: 245 GKLSNRYGKCSVRHVLLTCSLDGTARLWSEIDNAKARRTAKDINDQKNAGCSFCVVAVIE 304
Query: 315 INQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEWLVGYGPGSLV 374
INQ+LN L DI + W E +F+T + A S +EH C+WLVG+GPG L+
Sbjct: 305 INQSLNATLSSDIFVRWGTEFEGLFQTDKEAKQVFSKEGFEHD-VRNCDWLVGFGPGMLL 363
Query: 375 TLWAIHCLDDISPLRFPRVTLWKK---QNLELEHPHNSGFSGFQGQSLLNKVVISRDCVS 431
+ WA+HCLDD+SPLRFPRVTLWKK QN ++ + + S F+ L+KV+I R C+
Sbjct: 364 SFWAVHCLDDVSPLRFPRVTLWKKHELQNHDIANVYKFNSSDFKNALFLHKVIILRSCLF 423
Query: 432 GLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSASRILSIEGHTGK 491
G PTICS + L CNSLVWS Q + + S+D +T I S +L+++GH+GK
Sbjct: 424 GPPTICSSLQLLPCNSLVWSNFRIQTIHNAVEDSNDNVNTDNISSHLTGGVLNLDGHSGK 483
Query: 492 ILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTRKSCS 551
IL+V++HPC + + A SLDSNGLLLFWSLS ISNCI PTL+P+ +LCGKL T+ SCS
Sbjct: 484 ILKVSLHPCTCKVQFAASLDSNGLLLFWSLSNISNCILGCPTLVPTMELCGKLATQDSCS 543
Query: 552 NYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDG 611
YTSL+WAPS+L + +V MGH GIDCFIV I Q+E ++I CHY+CTIPF+GHG YEDG
Sbjct: 544 LYTSLKWAPSILGDKLVFFMGHTRGIDCFIVNICQSEEENIECHYLCTIPFSGHGPYEDG 603
Query: 612 PANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCIDDNNTV 671
P +IF++PL S DKT NK MLL +W+ ++LSWE+ HSFD+S +CC C D ++
Sbjct: 604 PFDIFTIPLNSTCDKTFRNNKLMLLAIWMGRFQALSWEVNLHSFDMSTNCCECNFDVKSI 663
Query: 672 -KCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDND 730
CS+ FE+TF KKY I VNPCS +FP +++ VTSFAV L QQ+ ND
Sbjct: 664 DNCSVRAFESTFANKKYCITVNPCSCEFPS--SKDLVTSFAVADSGTLSHRQQEFSLAND 721
Query: 731 PCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRK 790
CS P Y MATG SDG L+LW+S+ G S T +PWELVG VAH GP+ I L + G K
Sbjct: 722 LCSSYPAYIMATGSSDGILKLWKSKPGNSLTQHLPWELVGSFVAHDGPIKDICLANCGEK 781
Query: 791 IATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQSLLGVC 850
IAT S+SNA++ + IW++V + G+F+LED + +++++A+ WLTL G+ LLGVC
Sbjct: 782 IATFCYESNSNAINTIHIWDAVPLISAGTFILEDKIKTESDVIALKWLTLGTGELLLGVC 841
Query: 851 LQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPT-FAAHDFTWGRRAIAIVVHQSY 909
LQNEL VYA + G L D+ N KM W C+A++ T +DF WG RA A+V+H +Y
Sbjct: 842 LQNELHVYAPKRCVGTTLSDSVNFPKMNIWVCIAYAHTSIPIYDFLWGPRAAAVVIHGNY 901
Query: 910 LSIYSQFLFLIDKKHQAK---CNSNVFIDNFCCHKSGINENIVSTIFTVCD----SESSA 962
SI+S +LF DKK +K C+S + + C K I E+I+S++FT D E S
Sbjct: 902 FSIFSHWLFHEDKKQGSKFRPCDSKP--NTYNC-KDEIYEDILSSVFTEYDIGAYREQSL 958
Query: 963 GDQRGDYESAPSVNIDMKNDH---LVASDQLKCGGAI-LGSWSMLEIAEKLRGSLPVYHP 1018
GD D++S S+ I+MK++ +A +QLK +G WS+LE+AE + GSLP YHP
Sbjct: 959 GDSHADFDSVQSIKINMKDNSSSLFLAKEQLKSELLTKVGLWSILEVAEIISGSLPTYHP 1018
Query: 1019 KALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLSTYFEGLLSK 1078
L NI SGNWKRAYV+VRHLVE L +NY +KR+ + +P +LLS Y EG + K
Sbjct: 1019 DVLLTNISSGNWKRAYVAVRHLVECL-TNYDPKKRHISKRIG--LPNVLLSYYLEGCIPK 1075
Query: 1079 GSTDNGFQWSGLNTFSTSLQFRQ-----FAYNMDLDASNSS--SSTKSELSGFVELLQNV 1131
GS GFQW G TS+ Q F Y+ D N S SSTKSEL+ F+E L+
Sbjct: 1076 GSQPKGFQWGGDAALITSISQAQSSLFRFPYHSDSSVENESISSSTKSELNDFIESLEKF 1135
Query: 1132 YELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGK 1191
+L + D EK +ILA++DLL+E + HS+S Y++LDEPG+RFWV LRFQ L F R+F +
Sbjct: 1136 PDLPFLVDIEKTQILAIIDLLSEVSSAHSSSAYQSLDEPGRRFWVALRFQQLLFLRKFAR 1195
Query: 1192 LVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRME 1251
S EEL VDSRL WA+HS+C + LFGS++PNEP+W EMRALG+GFWY ++ QLR RME
Sbjct: 1196 AASFEELLVDSRLFVWAYHSDCLDNLFGSVIPNEPSWQEMRALGMGFWYANIPQLRARME 1255
Query: 1252 KLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAA 1311
KLAR QYLK K+PKDCALLYIALNR+QVLAGLFKISKDEKDKPLVGFLSRNFQ+EKNKAA
Sbjct: 1256 KLARAQYLKNKNPKDCALLYIALNRVQVLAGLFKISKDEKDKPLVGFLSRNFQDEKNKAA 1315
Query: 1312 ALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLER 1371
ALKNAYVLLG+HQLELAIAFFLLGGD +SA+ +CA+NLGD QLALVICRLVE HGGPLE
Sbjct: 1316 ALKNAYVLLGKHQLELAIAFFLLGGDHSSAINICAKNLGDEQLALVICRLVEGHGGPLEH 1375
Query: 1372 NLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAFMD 1431
+L+TK+ILP +I++GDYWL SLLEWE+GNY QSF ML F V + SN F+D
Sbjct: 1376 HLITKYILPFAIDKGDYWLASLLEWEMGNYYQSFYRMLEFSVNPVPRESTVMSNCGPFLD 1435
Query: 1432 PSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLP-------------- 1477
P++G YC MLA KNSMRNA+GE+N+AIL RWA LM AL RCG P
Sbjct: 1436 PTVGFYCQMLATKNSMRNAVGEQNSAILLRWATLMTVAALKRCGNPCEQGHFCLYVFIAL 1495
Query: 1478 ----LEALDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLE 1533
LEAL+ SSS S G DQES L H +L LKP SNWL ++++HLE
Sbjct: 1496 YVGVLEALEYFSSSLSMPGTADQESELGDSHD-VLSSTLKP-LPRKCSNWLSANMSVHLE 1553
Query: 1534 SCAKLDLSLQYFSKLIRDHPSWPDLGF---GRASKCFMDFEIHQYEKLVQNFQQKLYTAL 1590
KL+L+L Y SKLI++HPSW D G AS D + QYEK V++F+QKLYT L
Sbjct: 1554 FHIKLNLALCYLSKLIKEHPSWLDTFAEYNGEASDS--DEYMMQYEKSVESFKQKLYTGL 1611
Query: 1591 AFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGY----ICQGKSQEKSSDTVDGLS 1646
A FE+RF + LI+ IL LLC++G L+IGYD+ GY + + Q S D+
Sbjct: 1612 ALFERRFLLAPRCLISMILLLLCHHGSLYIGYDMTDGYTQAELMENSQQNSSIDSKPKFL 1671
Query: 1647 LYF--CQHKPLLKAAEDISIFLSRFIAATS 1674
F C L K +E + L F+ A S
Sbjct: 1672 DAFQCCFEAWLQKNSEALLYMLEPFLVAQS 1701
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2389 | ||||||
| FB|FBgn0023458 | 3429 | Rbcn-3A "Rabconnectin-3A" [Dro | 0.103 | 0.072 | 0.318 | 4.8e-42 | |
| DICTYBASE|DDB_G0283535 | 2792 | DDB_G0283535 "DmX-like protein | 0.113 | 0.097 | 0.306 | 6.5e-41 | |
| MGI|MGI:2443926 | 3013 | Dmxl1 "Dmx-like 1" [Mus muscul | 0.122 | 0.096 | 0.307 | 4.2e-40 | |
| UNIPROTKB|Q8TDJ6 | 3036 | DMXL2 "DmX-like protein 2" [Ho | 0.113 | 0.089 | 0.312 | 1.5e-39 | |
| MGI|MGI:2444630 | 3032 | Dmxl2 "Dmx-like 2" [Mus muscul | 0.094 | 0.074 | 0.331 | 2.4e-38 | |
| RGD|1586163 | 3055 | Dmxl2 "Dmx-like 2" [Rattus nor | 0.094 | 0.073 | 0.336 | 4e-37 | |
| SGD|S000003794 | 1357 | RAV1 "Subunit of the RAVE comp | 0.112 | 0.198 | 0.285 | 3e-27 | |
| ASPGD|ASPL0000051923 | 1373 | AN0703 [Emericella nidulans (t | 0.118 | 0.205 | 0.274 | 1.5e-25 | |
| POMBASE|SPBC1105.10 | 1297 | rav1 "RAVE complex subunit Rav | 0.080 | 0.148 | 0.29 | 2.2e-15 | |
| CGD|CAL0004435 | 1235 | orf19.5395 [Candida albicans ( | 0.088 | 0.170 | 0.242 | 2.3e-05 |
| FB|FBgn0023458 Rbcn-3A "Rabconnectin-3A" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 4.8e-42, Sum P(11) = 4.8e-42
Identities = 85/267 (31%), Positives = 134/267 (50%)
Query: 1158 KHSASVYENLDEPGQRFWVEXXXXXXXXXXX-XGKLVSAEELAVDSRLIAWAFHSECQET 1216
K ++ ++LD+ G RF + + + V + I WAFHSE +E
Sbjct: 1872 KDGSTSTDSLDDCGLRFLLAMKHFTYLLRCLPLQQRAQFQRQGVGTSNIVWAFHSESEEE 1931
Query: 1217 LFGSILPN----EPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYI 1272
L +++P+ + W +R LGVG+W ++ LR +EKLA+ Y +K++P D A+ Y+
Sbjct: 1932 LL-NLIPSYTKGDLRWATLRDLGVGYWLKNINTLRRCVEKLAKCAYQQKQEPLDAAIYYL 1990
Query: 1273 ALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEXXXXXXXXXXYVLLGRHQLELAIAFF 1332
A+ + ++ GLF+ +DEK + F NF E+ +VLLG+ + E A+AFF
Sbjct: 1991 AMKKKSLVWGLFRSRRDEK---MTAFFGNNFAEDRWRKAALKNAFVLLGKQRFEHAVAFF 2047
Query: 1333 LLGGDAASAVTVCARNLGDVQLALVICRLVEKHG-GPLERNLVTKFILPSSIERG----- 1386
LL A+ VC L D QLAL+I RL E G G +L+ + IL + G
Sbjct: 2048 LLANSLNDAIEVCMNKLEDFQLALIIARLYEGDGEGCYYHHLLHEHILGTDAATGRCDLS 2107
Query: 1387 ----DYWLTSLLEWELGNYSQSFLTML 1409
D +L S+ W + Y +S T+L
Sbjct: 2108 RAHPDPFLRSMTYWTIKKYQESLNTLL 2134
|
|
| DICTYBASE|DDB_G0283535 DDB_G0283535 "DmX-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 6.5e-41, Sum P(7) = 6.5e-41
Identities = 87/284 (30%), Positives = 141/284 (49%)
Query: 1126 ELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVEXXXXXXXX 1185
E+L ++ +L ++ +E++++LAV D E LDE G RF +
Sbjct: 1379 EILSSI-KLGNLSSSEQIQLLAVTDTYGEIGEMRGG-----LDENGSRFILSAKVFQFLR 1432
Query: 1186 XXXXGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQ 1245
+ +++ + I WA HSE QET+ + P +P W ++ +G G W +
Sbjct: 1433 RSLPPQ---DRPISLSTTDILWALHSEAQETILSTCFPTDPDWDALKQIGAGLWIKSPST 1489
Query: 1246 LRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQE 1305
L +EKLA+ Y++++DP++C+L Y+AL + L L K SKD K V FLS++F +
Sbjct: 1490 LINVVEKLAKTTYIQRRDPRECSLYYLALGKKGALVALHKASKDIKQ---VEFLSQDFTQ 1546
Query: 1306 EXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKH 1365
++L +H+ ELA + FLL G AV + + GD QLALVI RL E
Sbjct: 1547 AKWITAANKSAFLLQSKHKYELAASLFLLAGQLKKAVNLLLQMQGDFQLALVISRLYEGE 1606
Query: 1366 GGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTML 1409
G R ++ I+P + + D L S+ W L Y + ++
Sbjct: 1607 NGECSRMIIEDHIIPLAKKTNDRSLLSICNWLLKKYEDAITCLI 1650
|
|
| MGI|MGI:2443926 Dmxl1 "Dmx-like 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 4.2e-40, Sum P(10) = 4.2e-40
Identities = 98/319 (30%), Positives = 155/319 (48%)
Query: 1134 LAGVTDAEKMEILAVVDLLNEF-----DNKHSASVYENLDEPGQRFWVEXXXXXXXXXXX 1188
L G+T E+M ++A+ D + +++ E LDE G +F +
Sbjct: 1496 LPGLTRMEQMSLMALADTIATTSTDIGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSL 1555
Query: 1189 XGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP----NEPTWPEMRALGVGFWYTDVT 1244
+ + AWAFHS +E L ++LP ++PTW E+RA+GVG+W +
Sbjct: 1556 PAYRAQLLHQGLSTGHFAWAFHSVAEEELL-NMLPAMQKDDPTWSELRAMGVGWWVRNAR 1614
Query: 1245 QLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ 1304
LR +EK+A+ + + DP D A+ Y+A+ + V+ GL++ KD K + F NF+
Sbjct: 1615 ILRRCIEKVAKAAFHRNNDPLDAAIFYLAMKKKAVIWGLYRSQKDTK---MTQFFGHNFE 1671
Query: 1305 EEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEK 1364
EE + LLG+ + E + AFFLLGG A+ VC L D+QLALVI RL E
Sbjct: 1672 EERWRKAALKNAFSLLGKQRFEHSAAFFLLGGCLKDAIEVCLEKLNDIQLALVIARLFES 1731
Query: 1365 H--GGPLERNLVTKFIL----P------SSIE-RGDYWLTSLLEWELGNYSQSFLTMLGF 1411
++++ K +L P SSI D +L S+ W L +YS + T++
Sbjct: 1732 EFDKSATYKSILRKKVLGIGSPASELSSSSINAHHDPFLRSMAHWILEDYSAALETLIKQ 1791
Query: 1412 QSTAVINNFALSS-NSVAF 1429
T + +S+ N + F
Sbjct: 1792 PVTEDEDQVMMSACNPIVF 1810
|
|
| UNIPROTKB|Q8TDJ6 DMXL2 "DmX-like protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.5e-39, Sum P(9) = 1.5e-39
Identities = 93/298 (31%), Positives = 146/298 (48%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKH--SASVYENLDEPGQRFWVEXXXXXXXXXX 1187
L G+T E+M ++A+ D + E D S S + LDE G R+ +
Sbjct: 1523 LPGLTRLEQMFLVALADTVATTSTELDESRDKSCSGRDTLDECGLRYLL-AMRLHTCLLT 1581
Query: 1188 XXGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1582 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1641
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
+ LR +EK+A+ + + D D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1642 INTLRRCIEKVAKASFQRNNDALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1698
Query: 1303 FQEEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E+ + LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1699 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLY 1758
Query: 1363 EKHGGPLER--NLVTKFILPS-------SIER--GDYWLTSLLEWELGNYSQSFLTML 1409
E +++ + IL S +R D +L SL W + +Y+++ T+L
Sbjct: 1759 ESEFETSSTYISILNQKILGCQKDGSGFSCKRLHPDPFLRSLAYWVMKDYTRALDTLL 1816
|
|
| MGI|MGI:2444630 Dmxl2 "Dmx-like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 2.4e-38, Sum P(8) = 2.4e-38
Identities = 80/241 (33%), Positives = 121/241 (50%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKHSA--SVYENLDEPGQRFWVEXXXXXXXXXX 1187
L G+T E+M ++A+ D + E D S + LDE G R+ +
Sbjct: 1522 LPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLL-AMRLHTCLLT 1580
Query: 1188 XXGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1581 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1640
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
V LR +EK+A+ + + + D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1641 VNTLRRCIEKVAKAAFQRNNEALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1697
Query: 1303 FQEEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E+ + LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1698 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLF 1757
Query: 1363 E 1363
E
Sbjct: 1758 E 1758
|
|
| RGD|1586163 Dmxl2 "Dmx-like 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 4.0e-37, Sum P(8) = 4.0e-37
Identities = 81/241 (33%), Positives = 121/241 (50%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKHSA--SVYENLDEPGQRFWVEXXXXXXXXXX 1187
L G+T E+M ++A+ D + E D S + LDE G R+ +
Sbjct: 1523 LPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLL-AMRLHTCLLT 1581
Query: 1188 XXGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1582 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1641
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
V LR +EK+A+ + + D D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1642 VNTLRRCIEKVAKAAFQRNNDALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1698
Query: 1303 FQEEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E+ + LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1699 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLF 1758
Query: 1363 E 1363
E
Sbjct: 1759 E 1759
|
|
| SGD|S000003794 RAV1 "Subunit of the RAVE complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 3.0e-27, Sum P(3) = 3.0e-27
Identities = 81/284 (28%), Positives = 137/284 (48%)
Query: 1203 RLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK-- 1260
R ++WA HS+ +E L SI + +W R + +W + L + E +A+ ++ K
Sbjct: 904 RDVSWALHSDNKEILLSSIDRHITSWNRAREYRIAYWIKE-QDLVKKFEDIAKYEFSKDD 962
Query: 1261 KKDPKDCALLYIALNRIQVLAGLFK--ISKDEKDKPLVGFLSRNFQEEXXXXXXXXXXYV 1318
K+DP CA+ Y+AL + Q+L L+K I E+ K +V F+S +F +V
Sbjct: 963 KRDPSRCAIFYLALKKKQILLSLWKMAIGHPEQQK-MVRFISNDFTVPRWRTAALKNAFV 1021
Query: 1319 LLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFI 1378
LL +H+ A FFLL V V + + D+ LA+ +CR+ E GP+ L+T +
Sbjct: 1022 LLSKHRYMDAAVFFLLTDSLKDCVNVLCKQVHDMDLAIGVCRVYEGDNGPVLGELLTAQM 1081
Query: 1379 LPSSIERGDYWLTSLLEWELGNYSQSFLTMLGF-----QSTAVINNFALSSNSVAFMDPS 1433
LP +I+ D W S + W+L + +L ++++++ + S DP+
Sbjct: 1082 LPETIKENDRWKASFIYWKLRKQEVAIKALLTAPIDLENNSSIVDKEVCVNRSFLVEDPA 1141
Query: 1434 IGLYCLM-LANKNSMRNAIGEKNAAILGRWAALMRAT-ALNRCG 1475
+ LY L N+N ++ IG N ++R T L R G
Sbjct: 1142 L-LYLYNHLRNRN-LKYFIGSLNVEAKIECTLILRVTDILCRMG 1183
|
|
| ASPGD|ASPL0000051923 AN0703 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 1.5e-25, Sum P(4) = 1.5e-25
Identities = 82/299 (27%), Positives = 144/299 (48%)
Query: 1200 VDSRLIAWAFHSECQETLFGSI---LPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARL 1256
V R I WAFHS Q+ L + + +W R G+ W ++ +R ++E +AR
Sbjct: 994 VSWREIVWAFHSGSQDILIDLVSRQFGGKLSWKAARESGIFMWLSNSATIREQLEVVARN 1053
Query: 1257 QYLK--KKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVG-FLSRNFQEEXXXXXXX 1313
+Y K +++P DC+L Y+AL + +L GL++++ +++ L+ +F+E
Sbjct: 1054 EYTKTEERNPIDCSLYYLALRKKNILQGLWRMAHWNREQSATQKLLANDFRESRWQTAAL 1113
Query: 1314 XXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNL 1373
Y LLGR + E A AFFLL AV VC +GD+QLA+ I R E GP+ + +
Sbjct: 1114 KNAYALLGRRRFEYAAAFFLLADHLRDAVQVCLNQVGDLQLAIAIARAYEGDNGPVLKEI 1173
Query: 1374 VTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINN---------FALSS 1424
+ +LP + G+ W+ S W LG + +++ + + ++ +L +
Sbjct: 1174 LETRVLPEAAMDGNRWMASWAFWMLGRRDMAVRSLISPVESLIPSDPASPETPGSISLQA 1233
Query: 1425 NSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATAL-NRCGLPLEALD 1482
S DP++ + L + +++ G + W ++R L +R G L ALD
Sbjct: 1234 KSYLSNDPALVVLYKQL-REMTLQTLKGASKVSAQAEWEFVLRNARLYDRMGCDLLALD 1291
|
|
| POMBASE|SPBC1105.10 rav1 "RAVE complex subunit Rav1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 58/200 (29%), Positives = 103/200 (51%)
Query: 1199 AVDSRLIAWAFHSECQETLFGSI--LPNEPT-WPEMRALGVGFWYTDVTQLRTRMEKLAR 1255
++ +R +AWAFHS + L L +P W + + FW + L+ +L+R
Sbjct: 924 SLPTREMAWAFHSSNKAVLLDHTKKLHGKPLLWNAVEEYAIPFWLNEQL-LKDVFLELSR 982
Query: 1256 LQY--LKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKP-LVGFLSRNFQEEXXXXXX 1312
Y + ++P++ +L +IAL++I V L++++ K+ V LS +F ++
Sbjct: 983 NHYAEIDDRNPENVSLYHIALHKINVFRDLWRLASWHKESARTVKLLSNDFSKKKWKVVA 1042
Query: 1313 XXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERN 1372
+ LL +H+ A AFFLL A VC RNL + LA+ + R+ E GP +
Sbjct: 1043 SKNAFALLSKHRYFYASAFFLLADSCYDAAKVCIRNLKSISLAIAMTRVYEGDDGPTLKR 1102
Query: 1373 LVTKFILPSSIERGDYWLTS 1392
L+ +++LP ++ + D WLT+
Sbjct: 1103 LINEYVLPLAVSQNDRWLTN 1122
|
|
| CGD|CAL0004435 orf19.5395 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 56/231 (24%), Positives = 99/231 (42%)
Query: 1125 VELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVEXXXXXXX 1184
+E L + L +T ++ +++ + ++ +F + + LD G R+ +
Sbjct: 940 IERLMKI-SLPLLTRHQQSTLISTIVIVKDF----TKDMLVELDPNGIRYLISLKLSSTA 994
Query: 1185 XXXXXGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPN---EPTWPEMRALGVGFWYT 1241
+ + LA I WA + + L + + + W EM+ G+ FW
Sbjct: 995 TATSTSSATTKKRLAQ----IQWAMMCKTPDILLEHVTKHYGGKIKWKEMKDSGMPFW-V 1049
Query: 1242 DVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDK-PLVGFLS 1300
+ EK+A L++ + C L Y++L + +L L K KD+K+K ++GF+
Sbjct: 1050 EKNSFTKLFEKMAALEFKDAPLGRIC-LYYLSLKKKDILIRLIK-HKDDKEKNKIIGFMQ 1107
Query: 1301 RNFQEEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGD 1351
++F + YVLLG H+ A FFLL A A C R L D
Sbjct: 1108 KDFTQASNRSSALKNAYVLLGLHRYLDAAYFFLL----ADAPKDCCRILAD 1154
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2389 | |||
| pfam12234 | 629 | pfam12234, Rav1p_C, RAVE protein 1 C terminal | 4e-57 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.004 |
| >gnl|CDD|221476 pfam12234, Rav1p_C, RAVE protein 1 C terminal | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 4e-57
Identities = 124/443 (27%), Positives = 207/443 (46%), Gaps = 59/443 (13%)
Query: 979 MKNDHLV--ASDQL----KC------GGAILGSWSMLEIAEKLRGSLPVYHPKALFLNIY 1026
+K+ +LV + +QL K G L + + + +L G LPVYHP+ L I
Sbjct: 137 LKDGNLVVASGNQLFIYDKELDLSLSSGLRLSNNDLFHLVSRLNGPLPVYHPQFLIQCIL 196
Query: 1027 SGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQIL---LSTYFEGLLSKGSTDN 1083
+G +LV+ + N R+ + L + + +
Sbjct: 197 AGK--------LNLVKEILLNLFKALRFYNEGEISDLDSTLKIPPEKFLDTD------TD 242
Query: 1084 GFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFV-ELLQNVYELAGVTDAEK 1142
G+ + N+ Y ++S F+ E L + L +T ++
Sbjct: 243 GYIVAATNSSIDHKTVPDEPY----------PKFNEDVSAFLREKLTKI-VLPYLTRHQQ 291
Query: 1143 MEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEELAVDS 1202
+ ++ +++ + E + + +D+ G RF LL + + F +AE+ +V
Sbjct: 292 ITLMDIIECVGEVEKNRRS-----VDDNGLRF-------LLGYRQHFSHKPTAEQKSVTW 339
Query: 1203 RLIAWAFHSECQETLFGSI-LPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK- 1260
R I+WA HS+ QE L + + +W E R GV +W D LR + E +AR ++ K
Sbjct: 340 RDISWALHSDNQEILLSFVSRQIQMSWEEARESGVFYWAKDAEALRNQFEVVARNEFTKD 399
Query: 1261 -KKDPKDCALLYIALNRIQVLAGLFKIS--KDEKDKPLVGFLSRNFQEEKNKAAALKNAY 1317
+DP DCAL Y+AL + QVL GL++++ E+ K ++ FL+ +F E + K AALKNAY
Sbjct: 400 DTRDPSDCALFYLALKKKQVLQGLWRMASWHPEQGK-MLKFLANDFNEPRWKTAALKNAY 458
Query: 1318 VLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKF 1377
LL +H+ E A +FFLL AV V R L D+QLA+ +CR+ E G + ++ +
Sbjct: 459 ALLSKHRYEYAASFFLLADSLKDAVNVLLRQLDDLQLAIAVCRVYEGDDGGPLKEILKEE 518
Query: 1378 ILPSSIERGDYWLTSLLEWELGN 1400
+LP + + GD W+ S W L
Sbjct: 519 VLPEAAKEGDRWMASWAFWMLNR 541
|
This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. Length = 629 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 25/147 (17%)
Query: 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY 2282
+ P GS + I +W+ + T + +
Sbjct: 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG----------HTGPVRDVAASAD 62
Query: 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI--TSSGSVIAAAGHS 2340
G AS + D T+ W LE G + H VS + + G +++++
Sbjct: 63 GTYLASGSSDKTIRLWDLETGECVRT--------LTGHTSYVSSVAFSPDGRILSSSSRD 114
Query: 2341 SNGINVVVWDTLAPPTSSRASITCHEG 2367
+ VWD ++ H
Sbjct: 115 K---TIKVWDV--ETGKCLTTLRGHTD 136
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2389 | |||
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 100.0 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.9 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.88 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.87 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.83 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.83 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.82 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.81 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.81 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.8 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.78 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.77 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.76 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.75 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.75 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.74 | |
| PTZ00421 | 493 | coronin; Provisional | 99.72 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.71 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.7 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.67 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.66 | |
| PTZ00421 | 493 | coronin; Provisional | 99.65 | |
| PTZ00420 | 568 | coronin; Provisional | 99.65 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.65 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.65 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.65 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.64 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.64 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.63 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.63 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.62 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.62 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.6 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.59 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.59 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.59 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.58 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.58 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.57 | |
| PTZ00420 | 568 | coronin; Provisional | 99.57 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.56 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.55 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.55 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.54 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.54 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.53 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.52 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.51 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.51 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.51 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.51 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.49 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.48 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.48 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.48 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.46 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.45 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.45 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.45 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.45 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.44 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.43 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.43 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.42 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.42 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.42 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.42 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.41 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.4 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.4 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.39 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.39 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.39 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.37 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.37 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.37 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.36 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.36 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.35 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.35 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.35 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.32 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.31 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.31 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.3 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.26 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.26 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.25 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.23 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.23 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.23 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.22 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.22 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.2 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.2 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.19 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.18 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.18 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.17 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.17 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.17 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.16 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.15 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.14 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.12 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.12 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.12 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.11 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.11 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.11 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.11 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.09 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.08 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.08 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.07 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.05 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.03 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.03 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.03 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.03 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.02 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.02 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.01 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.99 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 98.99 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.97 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.96 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.96 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.96 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 98.94 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.92 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.91 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.89 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.87 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 98.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 98.84 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.83 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.82 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.82 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.81 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.8 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 98.8 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.8 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.76 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.71 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.71 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.65 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.65 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.62 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.61 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.61 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.61 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.61 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.6 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.6 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.59 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.59 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.59 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.58 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.55 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.55 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.53 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.52 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.51 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.48 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.48 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.47 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.47 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.46 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.46 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.45 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.4 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.39 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.37 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.37 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.36 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.35 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.34 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.31 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.31 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.3 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.3 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.29 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.28 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.26 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.25 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.23 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.21 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.19 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.19 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.18 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.16 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.16 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.14 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.14 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.12 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.11 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.1 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.09 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.09 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.05 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.02 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 97.93 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.93 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.9 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.87 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.87 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 97.78 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 97.77 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.76 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.75 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.71 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.71 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.71 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 97.67 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.67 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.66 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.61 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.61 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.61 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.55 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.49 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.48 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 97.48 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.46 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.42 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.33 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.32 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.29 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.28 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.26 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.25 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.2 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.16 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.13 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.12 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.05 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 96.9 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 96.84 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 96.74 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 96.72 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.57 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.56 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.47 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.42 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.42 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.19 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 96.15 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.01 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 95.96 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 95.91 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 95.89 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 95.87 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 95.87 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.56 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.53 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.47 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 95.3 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 95.26 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.22 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 95.16 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.05 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.05 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 94.95 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 94.41 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 94.31 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.92 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.85 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 93.64 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.62 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 93.15 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 93.03 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.96 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 92.92 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 92.63 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 92.3 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 92.3 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 92.25 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 92.05 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 91.9 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 91.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 91.4 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 91.37 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 90.93 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 90.81 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 90.78 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 90.44 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 90.31 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 89.69 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 89.61 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 88.9 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 88.37 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 88.35 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 87.8 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 87.65 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 87.27 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 86.98 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 86.54 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 86.41 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 86.0 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 84.99 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 84.93 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 84.4 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 82.95 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 82.93 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 82.69 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 82.47 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 82.22 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 81.03 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 80.54 | |
| PRK10115 | 686 | protease 2; Provisional | 80.2 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 80.16 |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=3012.84 Aligned_cols=2154 Identities=24% Similarity=0.321 Sum_probs=1801.2
Q ss_pred ccccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCC-CCeeEEEEcCCCCCC
Q 000080 31 EFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNS-LPVTSISWSPETPSI 109 (2389)
Q Consensus 31 ~~ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~-~dVk~VaWSPd~~~~ 109 (2389)
-++|.||-+..+..+- ..+++++|+|||+|+.+||.- + +||++ |+||+..|+ ..|.+|+++-+ .
T Consensus 5 QvlpGa~n~g~~~y~~-gsi~~~pftay~sg~~vvIl~--n---~ferv------QiIp~~~~g~~~vsav~c~~~---t 69 (2439)
T KOG1064|consen 5 QVLPGAPNAGDNCYSV-GSIGDLPFTAYASGCDVVILT--N---DFERV------QIIPGAKHGNILVSAVDCSQQ---T 69 (2439)
T ss_pred cccCCCCCCCCCCcee-ceECCeeEEEeecCCceEEEc--C---CceeE------EeccccCcCceEEEEEeeccc---c
Confidence 3567777666655544 356688999999999999998 6 99999 999997775 77999999999 9
Q ss_pred CcEEEecCCeEEEEeeCC-CCCC----CCccceeeEEecccceEEEEeecCCCCeEEEEecceEEeec-------c----
Q 000080 110 GQLAAASENCIFVFAHDS-ASSK----GSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKK-------K---- 173 (2389)
Q Consensus 110 GeIaASyDntIRVw~~d~-~~~k----gd~~W~~~~tL~hssTV~sIAWSpdG~rLaSggdDV~IW~~-------~---- 173 (2389)
|.|||+|+|.|.||+|.. ...+ ..++|.+..+++|+++|-++.|+++|.|+++||+.+++|+. .
T Consensus 70 G~IA~sygn~v~I~eP~~i~s~k~n~~~~~~W~~t~qf~~~~~~~s~~w~~~~~rlltgs~~l~Lwq~~~~~~~~~~~~i 149 (2439)
T KOG1064|consen 70 GKIAASYGNVVSIFEPTNILSSKGNPHLAVQWVQTTQFFHDSTVVSLNWNFEGLRLLTGSDNLQLWQETINFSIEEPEEI 149 (2439)
T ss_pred ceeeeccCCeeeecCCcchhhhcCCcceeeeEEeeecccccccceeeeeccccchhhhcCcceEEEeccCCccccccccc
Confidence 999999999999999863 1122 34579999999999999999999999999999999999973 1
Q ss_pred -------CCcEEEEEEeeccccceEEEEeecCCCc-eEeeecccc-cccCCCCCCCceeEEEeeCCCccceeecccCCCC
Q 000080 174 -------NTLWEIAWKFKENYPQNLVSATWSIEGP-SATAASMSQ-LDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQP 244 (2389)
Q Consensus 174 -------~s~Wecvwt~~~~~~~~ivsvaWSpdG~-fATag~dik-f~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qd 244 (2389)
-..|||+|+++..++ ++..+|||||. |||+|.+-. .++|-.+. +-++.++..|.++|++||++
T Consensus 150 ~d~~l~~~~~We~iW~~k~~~~--v~~~~~SpDG~f~at~g~~dclaKvwy~~~------~~~~~~~~~f~~vyL~HP~~ 221 (2439)
T KOG1064|consen 150 TDTVLPKRRDWELIWSCKTPSP--VYSSTISPDGEFFATIGKRDCLAKVWYKST------VSQSGGEESFSFVYLPHPRR 221 (2439)
T ss_pred ccccccccccceEEEeccCCcc--eeEEEEcCCcceEEeccccCcchhhhcccc------cccccCccceeeEeccCCcc
Confidence 137999999987766 88889999999 888888443 33331000 11235667789999999999
Q ss_pred eeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeecCCcccccccccC------CCCccceeEEEEEEEeeccc
Q 000080 245 VSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTN------DHKTIRRSFCVGAIIEINQA 318 (2389)
Q Consensus 245 Vn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d~Gk~kk~~~~~~------d~~~~~~sF~vaA~I~~~~~ 318 (2389)
|++++||.+++||||+ +++|+|+|||.||++|||+|++.++.++.++... -|.++.+|||+||.|| +
T Consensus 222 Vs~~~WRktskymp~g----sv~nvL~T~C~D~v~RIW~et~~p~~~l~~~~~~~~~~~~~~~sa~~~f~~aadin--~- 294 (2439)
T KOG1064|consen 222 VSGFQWRKTSKYMPRG----SVSNVLMTCCLDNVCRIWCETDLPKDCLVMLTGFDHKMKSFHVSALCHFHIAADIN--P- 294 (2439)
T ss_pred cccceeccccccCCcc----chhhhHHhhhccCceEEEEEeccCCCeEeeeccccccccccccCCCcceEEEeecC--c-
Confidence 9999999999999999 7999999999999999999999998888666553 3567899999999999 7
Q ss_pred ccCCCCCCeEEEeecccccee--eccCCccceecccccccccceeeeeeEeecCCccceeEEEeeeccCCCCCcCeEEEe
Q 000080 319 LNGALGMDIVITWAKEIRCMF--ETGEGANHFISTGVYEHGGTGKCEWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLW 396 (2389)
Q Consensus 319 ~~~~l~~~~~v~W~~~~~~vf--~~~~e~~~~~~s~~~~~~~v~~~eW~~~~~PGs~l~~W~v~~LDd~~~~R~prVt~~ 396 (2389)
.|| +|.| |+||||+|| -+-|..++.++.++++...|+.|||+.|..||..+++|||||||||+||||||||||
T Consensus 295 ~tD----~F~v-Wlnnke~~F~~~t~e~se~~~s~d~~~e~~vg~~~r~~G~ss~~~l~~W~V~~LDd~~pfRq~~vS~~ 369 (2439)
T KOG1064|consen 295 ATD----PFVV-WLNNKELHFLTLTHENSEQDFSMDDEDEEIVGDGERLGGLSSGNPLNNWHVEWLDDYSPFRQPQVSFS 369 (2439)
T ss_pred ccC----ceeE-EEecccceeEEEeecCcccccccccccccccccccccccccCCCcccchhhhhccccCccccceeeec
Confidence 555 5666 999999999 444444556788888888899999999999999999999999999999999999999
Q ss_pred eeccccccCCCCCCCCCCcCccccceeEEe-----------ccccCCCCcccccccccccCcceeehhcccCCCCccccc
Q 000080 397 KKQNLELEHPHNSGFSGFQGQSLLNKVVIS-----------RDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVS 465 (2389)
Q Consensus 397 ~r~~~~~~~~~~a~f~~~~da~~l~~~vi~-----------r~~~~g~p~~cs~~~l~~~N~~~~~~~h~~~sln~~~~s 465 (2389)
+|+|. +||+ +|+++|++.+.+ ++...-+..+|+++...+ |+++|+++|.||++| +++
T Consensus 370 srip~--------a~p~-~da~SLss~~~~~~~~~~~k~aiq~~~~~~~s~~ss~~Hs~-~tv~~is~H~ngsln--~~~ 437 (2439)
T KOG1064|consen 370 SRIPS--------AFPT-GDAMSLSSATMLNDCTPLYKDAIQPDNLYPGSILSSSYHSK-PTVMMISKHTNGSLN--SVS 437 (2439)
T ss_pred ccccc--------cccc-cchhhhhhhhcccCCcccchhhhccCCcCCCccccccccCC-CceEEEEeecccccc--cee
Confidence 99999 9999 999999999887 222223335788777777 999999999999999 889
Q ss_pred cCCCC-ccceeeecccceeeeccccceEeEEeeeccccchhhhhcc-CCC------ccEEEEEecccccccCCCCCCCCc
Q 000080 466 SDKSS-TGQILSCSASRILSIEGHTGKILQVAVHPCVSEFELAVSL-DSN------GLLLFWSLSTISNCISDLPTLMPS 537 (2389)
Q Consensus 466 ~~~~s-f~~i~s~~~s~~~~~~GH~~~i~qv~~Hp~l~~l~Lt~S~-d~~------~~LilW~vspv~~~~~~~~~~~P~ 537 (2389)
|++.+ |++++++ +|++|+|||||+|+||++||++ |++||+|+ +++ +|||+|+++|| ||
T Consensus 438 fs~~ssft~vls~--~h~~r~~GHrf~i~~la~hsvl-pllltTS~~~~~~~~~i~Se~ilwrv~~v----------gP- 503 (2439)
T KOG1064|consen 438 FSLKSSFTTVLSI--GHVSRFCGHRFHINDLACHSVL-PLLLTTSHHNSNDPIAICSELILWRVDPV----------GP- 503 (2439)
T ss_pred cccccchhheeee--eeEEEeecCCcchhhhccCCCc-cceeeecccccCCccceeeeeeEeeccCC----------cc-
Confidence 99988 9999999 9999999999999999999999 88888887 434 89999999999 99
Q ss_pred cccccc---ccccccc--CCccceeeeccccccceEEEEeecCCeeEEEEeccccCCCCeEeeeeEEEeccCCCCCCCCC
Q 000080 538 WKLCGK---LRTRKSC--SNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGP 612 (2389)
Q Consensus 538 l~~~Gg---lar~~s~--~~ftsl~W~Psil~~~~~~fva~~gg~d~~l~~i~~~~~enit~~~~c~i~l~~~~~~~~~~ 612 (2389)
+|+.|| ++|+++. ++|++|+|+|++||++|...+ |.|+.+||++.-++... +--|..|+|||+.......
T Consensus 504 ls~~ggVselar~Ns~~~s~fs~v~w~ptllps~~lg~~-~ns~sacFvA~dg~~~r--~yqavida~~ll~e~s~~e-- 578 (2439)
T KOG1064|consen 504 LSFNGGVSELARINSLHISAFSNVAWLPTLLPSYCLGTY-CNSPSACFVASDGGNLR--KYQAVIDAIPLLVELSLPE-- 578 (2439)
T ss_pred eeeccCcchhhhccchhhhhhceeeecccccccceeeee-ccCCcceeEEecCCcch--hhhhhhhcchhhhcCCchh--
Confidence 999999 9999998 999999999999999998777 88888888888776654 5778899999987644332
Q ss_pred ceeeeecCCccCCcccccceEEEEEEeecccceeEEEEEEeeecCCcccccCC-CCCCccccccCCcccccccceeeeee
Q 000080 613 ANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCI-DDNNTVKCSMCKFETTFCGKKYFIGV 691 (2389)
Q Consensus 613 ~~ih~~p~~~~~~~tf~~n~f~lv~v~~~~f~~l~W~v~l~s~~~~~~~~~c~-~~~~~~~~~~~~~~~s~a~k~~~l~~ 691 (2389)
.++++-|.-.+|+++|+-+++.++-||+++|...+|+.+||.|+....+|+|+ -+.+......+-|+..|.++.++..+
T Consensus 579 ~S~~i~~~~n~vsqqsta~Pgcil~l~~i~~~~~~ns~~lhvFq~~~i~~~~~~~~~~~~~~~~~~Fee~F~~v~ie~~~ 658 (2439)
T KOG1064|consen 579 TSKFIGEVFNIVSQQSTARPGCILELDPIEKHNGSNSQLLHVFQEGFITADEHFMDSDSGGSPNPLFEEKFYGVIIEKKI 658 (2439)
T ss_pred HhhHhhhhhccccccccCCCcEEEeccccccccccchhhhhhhccCceeecccccccccccCCCccccccceeeeeeeec
Confidence 78888899999999999999999999999999999999999999999999999 77777777778899999999888888
Q ss_pred c----cccCcCCCCCCcccccEEEEeecCCCcCCCccccCCCCCCCCCCCeEEEEeecCCcEEEEEEEeCCCCCCceeee
Q 000080 692 N----PCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWE 767 (2389)
Q Consensus 692 ~----~cs~~~P~~~l~~~v~s~~~v~p~~~~~~~~~l~s~~~~~~~~~pYliaT~CSDG~VRfWkc~v~~~~~~~y~We 767 (2389)
+ +|+|++| +||+| +++++.|++ |||++++.||+ +||+|||+|+||+||||||++.++++....
T Consensus 659 d~ls~v~~q~l~---lpE~v-~i~~~~Psa-----ghlSssS~ypa--apYli~t~~sDg~vRfWrc~~~~d~~~~~s-- 725 (2439)
T KOG1064|consen 659 DSLSSVYTQELD---LPEGV-DIIVISPSA-----GHLSSSSNYPA--APYLIATICSDGLVRFWRCRVQGDDTAPNS-- 725 (2439)
T ss_pred cccceeccCCCC---cccce-eEEEecCcc-----ccccccccCcC--cceEEEEeccCCceeeeeeeeccCCCCccc--
Confidence 7 6778885 99999 899999998 99999999999 999999999999999999999876544332
Q ss_pred eeeeeecCCCCceEEEeecCCCeEEEEccCCC-CCCccEEEEEeeccccCcceeEeeceeccCC-----------ceEEE
Q 000080 768 LVGMLVAHQGPVSAISLTDGGRKIATVSAASH-SNAVSNVRIWESVCVTELGSFVLEDTLSFDT-----------NIVAV 835 (2389)
Q Consensus 768 ~w~ml~~~~G~p~~IS~a~tGR~a~a~~~~~~-~~~~s~vsIWD~~~~sgGGswvLE~ti~ld~-----------~IVdL 835 (2389)
||+|+.+ +|+|+|+||+||+|+++++ +....+|+|+|| ++++|+.|++|++|+++. |||||
T Consensus 726 ~W~l~~~------~Is~a~tgr~A~ay~~~~s~s~~~~~vai~ec-es~ggS~W~le~ti~~~~~~~e~~~~n~~~lv~L 798 (2439)
T KOG1064|consen 726 EWPLVSE------EISCAQTGRLACAYKKGSSTSIFALKVAIFEC-ESRGGSIWVLEQTIHSDEEHLESIFHNDKHLVDL 798 (2439)
T ss_pred hhHHHHh------hhhhcccCceeEEEecCCCcchheeEEEEEEe-cCccceEEEeehhhhhhhhhhhhhccccccceee
Confidence 6667666 8999999999999999887 567789999997 555555599999999863 89999
Q ss_pred EeEEccCCcEEEEEeecceEEEEEeccCCccccccccc--------------ccccccceeecc----CCCCC-cccccc
Q 000080 836 NWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKN--------------SLKMQNWFCLAF----SPTFA-AHDFTW 896 (2389)
Q Consensus 836 DWtStEDGqhILTVGfg~kVlLYtQlRydytn~~~~~~--------------ll~~~~w~~Id~----~~T~h-IgDssW 896 (2389)
|||||||||||||||||++|+||+|+|++|++...+.| ..-.+.|.++|. .+||| |+|++|
T Consensus 799 DW~Stedg~hILtVg~g~~v~lY~qlr~~~~~~t~~~~~~~s~~~P~~~~~~~~~~~~W~~lR~idl~~gtp~lp~~~sW 878 (2439)
T KOG1064|consen 799 DWTSTEDGQHILTVGFGSKVLLYGQLRQDYTNQTFAAMSSESQIRPLFRSTKSLSASSWVLLRSIDLLSGTPPLPVDLSW 878 (2439)
T ss_pred eeeecCCCcEEEEEeccceEEEEeecccchhhhhhhhhcchhhcccchhhhccccccceeeeeEEeeecCCCCCcccccc
Confidence 99999999999999999999999999999998652211 111237777763 59999 999999
Q ss_pred ccCceEEEEecCeeEEeeccchhhccccccccCCCccccccccccCCCCCCceeeecccccccCccC-CCCCcccCCCcc
Q 000080 897 GRRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAG-DQRGDYESAPSV 975 (2389)
Q Consensus 897 VRDGILVVGmgnEMhVYSQWl~~~~~k~q~~~~~~~~~~~~~~~~s~~~~~lv~~i~~~~ds~~~a~-~ql~~~~s~~~~ 975 (2389)
|||||||||||||||||+||++.... ..+........+ .++. +..+.+ .+.. .+......+
T Consensus 879 vrdGilVv~md~em~vy~qw~~~~~~------~~D~~l~s~~~d-----~s~~---~~~~~~-~~~~~~~~S~~~~~--- 940 (2439)
T KOG1064|consen 879 VRDGILVVAMDNEMHVYNQWKPSLVQ------GRDSSLLSTTND-----ISLL---DSTSTS-SGCLPSKKSRVLGD--- 940 (2439)
T ss_pred eecceEEEeecCcceehhcccccccc------ccCcccccCccc-----hHHH---Hhhccc-cccccCcccccccc---
Confidence 99999999999999999999983221 111111000000 1110 000000 0000 011111111
Q ss_pred cccccccccccccccccCCcc-ccccCHHHHHHHHcCCCCCcchHHHHHHHHcCCchhHHHHHHHHHHhccCCCCCcccc
Q 000080 976 NIDMKNDHLVASDQLKCGGAI-LGSWSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRY 1054 (2389)
Q Consensus 976 ~~~~~s~s~i~~~~~~~~~~~-~~~~~Lfe~~~~LnGpLPvYHPqfLiQ~L~~GK~~rVK~IL~~Lvk~L~~~~~~~~~~ 1054 (2389)
..+.+...++... +.+.. +.+.++||++++|+|+|||||||||+|+|++||++|||+||.||++||+....-.+.+
T Consensus 941 -~s~~~~~~~~~a~--~~~t~~~~~~glfe~a~vl~g~LPqYHP~qLl~ll~~gk~rrakAIL~hL~~cl~~~~~~~~~~ 1017 (2439)
T KOG1064|consen 941 -TSVANMSCIGTAY--GSPTVDIDDMGLFEAAHVLSGILPQYHPQQLLELLDAGKVRRAKAILLHLVLCLKGSVTVHKDL 1017 (2439)
T ss_pred -cchhhcccccccc--CCcccccccccHHHHHHhhCCCCcccCHHHHHHHHHcCcHHHHHHHHHHHHHHhcccccccccc
Confidence 1112222222211 33444 4789999999999999999999999999999999999999999999998832211111
Q ss_pred c----------------ccCCCCCCcccchhhhhcc-cccCCCCCCCccccCCCcccchhhhhhccccccccCCCCCCCc
Q 000080 1055 C----------------YTKSSHIVPQILLSTYFEG-LLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSST 1117 (2389)
Q Consensus 1055 ~----------------~~e~~~~~p~i~l~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~f~~~~~~~d~d~~~~~~~~ 1117 (2389)
+ +++++++ |+.|++.+.+. .++.+...++ ...|++.|+ +....+ ..+++
T Consensus 1018 ~~~st~~~~~d~~~~~~~~ei~Si-pplPl~~l~~ad~Ds~~~s~e~-------s~gyd~lF~-----~~~~~~-~~~e~ 1083 (2439)
T KOG1064|consen 1018 ASDSTSVLCQDELISKDTTEIDSL-PPLPLYALLAADRDSPYQSVEK-------SSGYDELFN-----DELSKT-ILLET 1083 (2439)
T ss_pred ccccccccchhhhccccchhhccC-CCCcHHHhhccccCCcceeccc-------ccccchhhh-----cccccc-ccccc
Confidence 1 1355544 55555444432 2211111000 011344552 222222 22456
Q ss_pred hhhhhHHHHhhhccccccCCCHHHHHHHHHHHHHHHHhhccccccccccCCccccchhhHHHHHHHHHhhhcCccccccc
Q 000080 1118 KSELSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEE 1197 (2389)
Q Consensus 1118 ~~~~s~l~E~L~k~~sLPgLT~~EQm~Llalidtv~~i~k~~~~~~~~sLDenGlRFLl~~k~~ql~~lr~~~~~~~~~~ 1197 (2389)
+++.+-|++.|.++++||||||+|||+|+||||||+++...++. ++|||||+|||++||+++++..+..++.++.+.
T Consensus 1084 d~~~s~FLt~lLths~lpgLSR~eQm~LlAlaDtv~~~st~~~~---~tLDecGlRfllamr~~~~ll~~lp~~raql~~ 1160 (2439)
T KOG1064|consen 1084 DEEFSYFLTELLTHSSLPGLSRLEQMHLLALADTVAETSTDHSE---ETLDECGLRFLLALRLHTLLLTSLPGYRAQLLH 1160 (2439)
T ss_pred hhhhhHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHhcccccc---ccccccchhHHHHHHHHHHHHhhchhhhhhhhh
Confidence 67777888777777899999999999999999999999877543 679999999999999987655444444556666
Q ss_pred cccccccchhhhcccCHHHHHhhc---CCCCCCHHHHHHcCcEEEEeChHHHHHHHHHHHHHHHhccCCcchhHHHHHHh
Q 000080 1198 LAVDSRLIAWAFHSECQETLFGSI---LPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIAL 1274 (2389)
Q Consensus 1198 ~~Ls~r~i~WA~HSesqe~LL~~v---~~~~~sW~~~r~~Gv~~Wl~~~~~Lr~~~EkIAr~ey~~~kDP~dcaLfYlAL 1274 (2389)
.+|++++|+||||||+||+||+.+ .+++++|++||++|||||++|..+||++||||||++|+++|||+|||||||||
T Consensus 1161 ~gl~ts~iaWAFHSe~eEeLlNl~psl~r~~~sW~elR~~gig~WlkN~~~Lr~ciEKlAK~af~kn~dP~DaALfYLAL 1240 (2439)
T KOG1064|consen 1161 QGLSTSHIAWAFHSENEEELLNLLPSLHRGDPSWNELREYGIGWWLKNEQTLRKCIEKLAKAAFQKKRDPLDAALFYLAL 1240 (2439)
T ss_pred cCCchhheeeecccccHHHHHhhcccccCCCccHHHHHhhCchhhhccHHHHHHHHHHHHHHHHHhcCChhhhhHHHHHH
Confidence 799999999999999999999854 57899999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcccCCCchhHHhHhhcccChHHHHHHHHhhHHHHhhcchhHHHHHHHHhcCChhHHHHHHHHhcCChhh
Q 000080 1275 NRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQL 1354 (2389)
Q Consensus 1275 ~Kk~vL~gL~k~~~~~k~~~m~~FLsnDFse~RWr~AAlKNAyaLLsK~Ry~~AAAFFLLAg~lkDAV~Vc~~~L~D~qL 1354 (2389)
|||+||+||||++++||+++|++||+|||++||||+||+||||+||||||||+|||||||||+++|||+||++||+|+||
T Consensus 1241 kKk~Vl~gLfr~~~~hed~kmv~FfsnnF~eerWrkAAlKNAFvLLgKhRfe~AaaFFLLagslkDAI~VC~kkl~DiQL 1320 (2439)
T KOG1064|consen 1241 KKKQVLWGLFRLAKDHEDTKMVVFFSNNFTEERWRKAALKNAFVLLGKHRFEHAAAFFLLAGSLKDAINVCCKKLNDIQL 1320 (2439)
T ss_pred HHHHHHHHHHHHhhccccchHHHHhhccccHHHHHHHHHhhHHHHhhhHHHHHHHHHHhhcchHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCChhhHhhHhhhccccccccCChhHHHHHHHHhCChhHHHHHHhcCccccccccccccCCCccC-----
Q 000080 1355 ALVICRLVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAF----- 1429 (2389)
Q Consensus 1355 Ai~IaRLyEgd~gp~l~~lL~~~vLp~a~~~gDrwL~S~a~W~L~~~~~Av~~Ll~~p~~~~~~~s~l~s~~~~f----- 1429 (2389)
||+||||||||+||++++||+++|||.+++++||||+||+||+||+|.+|++||++.++.+......-.+++..|
T Consensus 1321 ALvI~RlYEgd~g~~~~~LL~~~vLp~~v~~~DpwLrSmayWiLkdy~rAl~tLl~~~~~end~~~~s~~~~~Vf~ny~y 1400 (2439)
T KOG1064|consen 1321 ALVICRLYEGDGGPTYKELLNKYVLPIAVQHNDPWLRSMAYWILKDYTRALLTLLGQLPRENDALYTSASNPEVFNNYSY 1400 (2439)
T ss_pred hheeeeeecCCCchHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhcccCcchhhchhh
Confidence 999999999999999999999999999999999999999999999999999999987433222110002222222
Q ss_pred -CChHHHHHHHHh-hccccchhhhccch----hhhhHHHHHHHHHHHHHhcCCChhhhhcccCCCCCCCCCCccccccCC
Q 000080 1430 -MDPSIGLYCLML-ANKNSMRNAIGEKN----AAILGRWAALMRATALNRCGLPLEALDCLSSSPSTIGGTDQESVLNIG 1503 (2389)
Q Consensus 1430 -~DPaL~l~~~~L-~sk~~~r~~~g~~~----~~~~~r~~~l~~a~~l~RmGC~lLALdll~~s~~~~~~~~~~s~~~~~ 1503 (2389)
-+|-+++|+... +.+..++++.|..+ +...|||+|+++|++|+|||||+||||+|++......++.+.+++...
T Consensus 1401 lr~hplllr~~~~~~~~~~~~~~L~~~~~e~~~~~iErrl~l~tA~ah~r~GCpllALevLs~~p~~~~~s~d~s~~~~~ 1480 (2439)
T KOG1064|consen 1401 LRTHPLLLRRNLASAEKFSLKYALGGRSLEDIINLIERRLFLTTANAHCRCGCPLLALEVLSKWPKVIKGSKDTSEASKL 1480 (2439)
T ss_pred hccCcHHHhhhhccccchhHHHHhhccchhhcccchheeeeeehhhHHHhcCCcHHHHHhhhcccccccCCcccchhhcc
Confidence 266666677776 66777888888777 457899999999999999999999999999999999999998988777
Q ss_pred Ccccccc----cccCCCCCCCccccccccccccccccccccHHHHHHHHhhcCCCCCccCcCCCCccccchhhhhHHHHH
Q 000080 1504 HSHILPE----ILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRDHPSWPDLGFGRASKCFMDFEIHQYEKLV 1579 (2389)
Q Consensus 1504 ~~~~~~~----~~~~~~~~~~~nw~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1579 (2389)
+-+--++ ...+..+ +|.+|....|....+++...+.+.+..+..-+|-..+. ++-++.+++| .
T Consensus 1481 ~~~d~q~~a~~~~~~~t~-~s~dw~~p~vs~~~d~~~~~w~~e~~ee~~~~e~~~~~-----------~~~p~~~~~k-~ 1547 (2439)
T KOG1064|consen 1481 QLDDRQSGASGEADSSTP-ISFDWSQPSVSDQDDSLELDWDEEQNEEEIDREADEPL-----------LNPPVRQCDK-F 1547 (2439)
T ss_pred ccccccccccCCCccCCc-ccccccCCcccCCCCCcccCccccccchhhcccccccc-----------cCCcccccch-h
Confidence 7666666 6777766 99999999999999999999999999888877775444 7778889988 7
Q ss_pred HHHHHHHHHHHHHHhhhcccChHHHHHHHHHhhccCCeeeeeeehhcccccCCCccccccCccCCcccccccchhhhhhh
Q 000080 1580 QNFQQKLYTALAFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAA 1659 (2389)
Q Consensus 1580 ~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1659 (2389)
-+++.|+.|+ ..|.|+|.+++...|.|..+.-.+.|....|..|...........+| ........+|....|.. |+.
T Consensus 1548 ~~~~s~~~t~-di~aq~~kfvA~l~ilm~eLsTlatG~e~dGg~lr~ql~nwlerev~-al~~~cd~~s~ak~~~~-~~~ 1624 (2439)
T KOG1064|consen 1548 LRQKSKNDTE-DIFAQQLKFVACLKILMEELSTLATGYESDGGKLRYQLYNWLEREVK-ALKDTCDYCSSAKSKSS-KSG 1624 (2439)
T ss_pred hhhhhcCChH-HHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHhhhhhhhhHH-HHHhHHhhhhhhhcccc-ccc
Confidence 7888899999 99999999999999999999999999999999999888888877888 66666667888888877 999
Q ss_pred hhHHHHHHhhhheeeeecccCCcCCccccccccccccccccccchHHHHHHHHHHHHHHHHhhcCCCcccccchh-hhhH
Q 000080 1660 EDISIFLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEELITPL-FLLD 1738 (2389)
Q Consensus 1660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~d 1738 (2389)
++.+++++|. .+|..+ |..+++++|.++.+++++|++|.++||||++...+..+|..|.+.|...|++.... +..|
T Consensus 1625 ~~~s~~~~~~-~a~~~p--h~~~~~~~~~~~~~~r~~Wl~a~q~llr~~ls~cslh~a~~~~lasv~mEll~ll~~~q~e 1701 (2439)
T KOG1064|consen 1625 DEKSLLLDRE-AACDVP--HQIKCFRLQRESAGKRKKWLKANQFLLRGFLSYCSLHGASGGGLASVRMELLLLLQEVQQE 1701 (2439)
T ss_pred chhhhhhccc-ccccCC--chhhhhhhchhhcccchHHHHHHHHHHHHHHHHHhhccccCCcchhhhHHHHHHHHHHHHH
Confidence 9999999999 999999 99999999999999999999999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHhhcccccceeeeecEEEEeecCCcceeechHhHHHHHHHhhhhhccccccccccccceeeeecccccc
Q 000080 1739 LYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERS 1818 (2389)
Q Consensus 1739 l~e~~~~~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1818 (2389)
+.||++.-+++|- .+...|..|++|..+.+.|+|+|||++...+++++||.+. .+++++.+++++.+.+-+++....
T Consensus 1702 ~~~~~l~~~l~~~-~t~plL~a~va~~k~~vanp~~~le~~~~dil~~i~q~~~--~p~p~~~~~~v~~l~sl~~~~s~~ 1778 (2439)
T KOG1064|consen 1702 TTEYQLSSPLPWP-TTVPLLFACVAPLKTVVANPLLYLENQTHDILRAIIQEAS--VPHPDASDVKVYVLHSLAVSLSAC 1778 (2439)
T ss_pred hHHHHHhcccCCC-cchhHHHHhhcCceEEEecCceehhhhHHHHHHHHHhccC--CCCCChhhcceeeehhhHhhhcce
Confidence 9999999999999 9999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred ccccCCCCccccceeehhhHHHHHHHHHHhhhhccccccccccccccccCccccccccCCCCCccchhhHHHHHHHHHHH
Q 000080 1819 TDLMNSIPEDERWQIMGACLWQHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQMRLLTLFL 1898 (2389)
Q Consensus 1819 ~~~~~~~~~~e~~~~~~~~~w~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1898 (2389)
.+..++.|+++ +.|... .|++.|.|.++...+++.++ .....|.|..+++ ....|.++..+..-+..+ +|.
T Consensus 1779 iY~~l~~~~~~-~ll~~r---~~~~~~s~~~~~t~~~~p~~---wpgvs~l~~ll~~-~~~~d~~~l~vll~E~~~-av~ 1849 (2439)
T KOG1064|consen 1779 IYQSLCDSESY-CLLTQR---PRLRTGSKDELVTPNTSPAQ---WPGVSGLIALLDS-EKEEDQSKLNVLLCESFV-AVY 1849 (2439)
T ss_pred eeeeecccccc-ccccCC---CccccccccccccccCCccc---ccchHHHHHHhhh-ccccccCcceEeehHHHH-HHH
Confidence 99999999999 444444 89999999999999999998 5667788999988 889999999999999755 699
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCCchhhhhhhhCCCCcchhhhhhhhhhhcccccccccchhHHHHHHhhc
Q 000080 1899 AQLLKSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDEAAISELLWDVC 1978 (2389)
Q Consensus 1899 ~~~~~~~~~~~ss~~~k~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1978 (2389)
+++++.+|...||||+++++....++.+.++..++..|| +|+ +|+.++..+++ ++.+.+.+++..++. --.+|
T Consensus 1850 ~slfi~~Lat~sS~~l~rl~~~~~n~~~~~~~fggg~~l-~~k-~~a~~~~~~ap----~~~e~t~~n~~~~~t-~~~~~ 1922 (2439)
T KOG1064|consen 1850 LSLFIHALATLSSRELFRLVAHPLNNLMWSLVFGGGLKL-ECK-PQAQSLNRDAP----SLSEETKENESKVST-PSKVS 1922 (2439)
T ss_pred HHHHHHHHHhccHHHHHHHhccccChhheeeeecCceee-eec-CcccCCCCCCC----cccccccccCCCCCC-CCCCC
Confidence 999999999999999999999999999999999999995 444 89999999998 555555555544444 22999
Q ss_pred CCCccccccccccccccccccccccCcchhhhhhcceeeeccccccccccccCcccccCcccccccccccCCCCCCCccc
Q 000080 1979 SDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWH 2058 (2389)
Q Consensus 1979 ~~p~~~~~~f~~e~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2058 (2389)
+||..++|.|+.|+++.++|+..||.+.|.|+++++....|.++ ++.+ .+++++..++..+.... ||
T Consensus 1923 ~~~~~~~ekfippe~~i~~~f~~KP~~~~~D~d~s~~sdne~~~-~~~D-----~~~s~~~l~e~~~~~s~------sw- 1989 (2439)
T KOG1064|consen 1923 VDSPALHEKFIPPELSIWDYFKAKPSEDWYDSDESVESDNEDYV-DDDD-----VRSSDEQLSEHNNPNSY------SW- 1989 (2439)
T ss_pred CCchhhhhhcCCccccHHHHHhcCcccccccchhhhcccchhcc-cccc-----ccccHHHHHhhcCCccc------cH-
Confidence 99999999999999999999999999999999999999999999 8886 56666666654444322 22
Q ss_pred ccccccccccCCCCchhhhhcccceeeeeecccCCCcceEEeecccceEEeeecccccccccccceeccCCCCCCCCCCC
Q 000080 2059 KDANMANEVIPFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGS 2138 (2389)
Q Consensus 2059 ~~~~~~~~~~~f~~~~~~~~~~~~~~~a~~~n~~n~~~~~~a~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2138 (2389)
+....+.++..|+|+||+|||-|+.++++|+|.||..|+.+++| ++++++|..+..+-..+.+|+|..|+|++++|+-.
T Consensus 1990 ~ll~la~~~~~~hn~k~~~~~aG~~~spl~~n~i~~~~a~~~~~-g~ai~~~~~l~~~~ntpf~s~~s~a~~~~rlW~~l 2068 (2439)
T KOG1064|consen 1990 SLLRLAMVQLALHNVKEFHKRAGEDISPLCRNYINHRQAELSSN-GPAILRNKALLEPSNTPFKSIDSSADSVKRLWAYL 2068 (2439)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhcccccccccccccccchhhhcC-CcceeehHhhcCccCCcccccccccccHHHHHHHH
Confidence 23458889999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccccCCccCCCccccCCCCcccccCCcccccccccCCCccccCcccccc------------------------------
Q 000080 2139 ESTPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGI------------------------------ 2188 (2389)
Q Consensus 2139 ~s~p~~~~~s~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 2188 (2389)
|+++++++|.-++|++.+++.|+++|+..-+ .+.+|+.--=.||+.
T Consensus 2069 v~q~~~qevfik~if~k~~~~e~~lG~~g~~----~~iike~e~ivaf~~n~~s~~~ia~an~~~~qe~dvs~~~~~q~~ 2144 (2439)
T KOG1064|consen 2069 VKQEVLQEVFIKYIFTKKKEIEADLGYSGGK----ARIIKESEEIVAFPVNKESVNTIAFANHHDVQEFDVSSSLAHQYY 2144 (2439)
T ss_pred hcccccceeeeeehhccCCccccccCcCCCc----eeEeecccceeccCcCcCCcceEEecCCCcchheeccchhhhhhh
Confidence 9999999999999999999999999865211 233333211112221
Q ss_pred -----------ccccccceeecc---ccccccc----cccccC------------------CCCcCceeEEEEEEcCCCC
Q 000080 2189 -----------PGYAGIGASALG---WETQDDF----EDYVDP------------------PATVENISTRAFSSHPLRP 2232 (2389)
Q Consensus 2189 -----------~g~~~~~Asg~~---~d~~~~~----~~~~d~------------------~atv~ni~VrsVAFsPdG~ 2232 (2389)
-| .+-.|.+.. ...+... ..|.+. ...++ .|+++.-||.-+
T Consensus 2145 ~w~~ne~d~~~~~-~d~~~~~s~~~~l~~~~~~~~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~v~--~v~r~~sHp~~~ 2221 (2439)
T KOG1064|consen 2145 WWFGNERDTETKG-VDPDANHSPPDALASQSTVGSFSNRFTPSNLPWLGSTQTSRGASVMIKHPVE--NVRRMTSHPSDP 2221 (2439)
T ss_pred hhhcchhhhhhcC-CCcccccCchhhcccccccccccccCCcccCCccccceecccceeEeecccC--ceeeecCCCCCc
Confidence 11 111111111 1112222 111110 11233 459999999999
Q ss_pred eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccce
Q 000080 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPME 2312 (2389)
Q Consensus 2233 ~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~ 2312 (2389)
+.+|||+||.||+|+++.|+.+.+++. +|. +.|+.+.|+.+|+.++.+..||.+.+|++.- +++.
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt--------~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p------k~~~ 2286 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRT--------AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP------KPYT 2286 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeec--------cCc-chhhhhhhcccCCceeeeccCCceeecccCC------ccee
Confidence 999999999999999999999999873 345 8899999999999999999999999999972 7999
Q ss_pred eeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcccc
Q 000080 2313 SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2313 tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~~ 2386 (2389)
+.+||+....+++|.. +++||+|.++++++|.+||++.++...+-. .||.++++++++-|+-.-.+|--|
T Consensus 2287 s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred ccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence 9999999999999996 899999999999999999999888877433 999999999999888766666443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-141 Score=1320.97 Aligned_cols=618 Identities=32% Similarity=0.526 Sum_probs=526.1
Q ss_pred CcEEEEEEEeCCCCCCceeeeeeeeeecCCCCceEEEeecCCCeEEEEccCCCCCCccEEEEEeeccccCcceeEeecee
Q 000080 747 GSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTL 826 (2389)
Q Consensus 747 G~VRfWkc~v~~~~~~~y~We~w~ml~~~~G~p~~IS~a~tGR~a~a~~~~~~~~~~s~vsIWD~~~~sgGGswvLE~ti 826 (2389)
|+||+|+++|+.+. ..+.|.++..+.++..+|..|+||.+| |+|++++ .+++|+|||+ .+| +||+++
T Consensus 1 g~~~~~~a~v~~~~-~~~~w~~t~~~~T~i~~~~li~gss~~-k~a~V~~-----~~~~LtIWD~----~~~--~lE~~~ 67 (631)
T PF12234_consen 1 GRIRTWTARVDTES-NKIEWLLTSTFETGISNPSLISGSSIK-KIAVVDS-----SRSELTIWDT----RSG--VLEYEE 67 (631)
T ss_pred CeeEEEEEEEcCCC-CeEEEEEEEEEecCCCCcceEeecccC-cEEEEEC-----CCCEEEEEEc----CCc--EEEEee
Confidence 78999999998775 589999999999999999999999998 6788865 5889999997 455 577777
Q ss_pred cc--CCceEEEEeEEccCCcEEEEEeecceEEEEEeccCCcccccccccccccccceeeccCCCCC-ccccccccCceEE
Q 000080 827 SF--DTNIVAVNWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFA-AHDFTWGRRAIAI 903 (2389)
Q Consensus 827 ~l--d~~IVdLDWtStEDGqhILTVGfg~kVlLYtQlRydytn~~~~~~ll~~~~w~~Id~~~T~h-IgDssWVRDGILV 903 (2389)
.| ++.|+||||||+||||+||+|||+++|+||+|+||||++..|.+...++.+ | .++||| |||++|++||+||
T Consensus 68 ~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~---i-~~~T~h~Igds~Wl~~G~Lv 143 (631)
T PF12234_consen 68 SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID---I-SSHTPHPIGDSIWLKDGTLV 143 (631)
T ss_pred eecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE---e-ecCCCCCccceeEecCCeEE
Confidence 77 789999999999999999999999999999999999888755554444311 1 369999 9999999999999
Q ss_pred EEecCeeEEeeccchhhccccccccCCCccccccccccCCCCCCceeeecccccccCccCCCCCcccCCCcccccccccc
Q 000080 904 VVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAGDQRGDYESAPSVNIDMKNDH 983 (2389)
Q Consensus 904 VGmgnEMhVYSQWl~~~~~k~q~~~~~~~~~~~~~~~~s~~~~~lv~~i~~~~ds~~~a~~ql~~~~s~~~~~~~~~s~s 983 (2389)
||+||||+||.+|.. . ...+.
T Consensus 144 V~sGNqlfv~dk~~~-~------------------------~~~l~---------------------------------- 164 (631)
T PF12234_consen 144 VGSGNQLFVFDKWLD-T------------------------SQSLG---------------------------------- 164 (631)
T ss_pred EEeCCEEEEECCCcC-c------------------------hhhcc----------------------------------
Confidence 999999999999985 0 01110
Q ss_pred cccccccccCCccccccCHHHHHHHHcCCCCCcchHHHHHHHHcCCchhHHHHHHHHHHhccCCCCCcccccccCCCCCC
Q 000080 984 LVASDQLKCGGAILGSWSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIV 1063 (2389)
Q Consensus 984 ~i~~~~~~~~~~~~~~~~Lfe~~~~LnGpLPvYHPqfLiQ~L~~GK~~rVK~IL~~Lvk~L~~~~~~~~~~~~~e~~~~~ 1063 (2389)
+......+||||+|++||||||+||||||+|||++||+++|++||.||+++|+.....+ ... . +..
T Consensus 165 ---------~~~~~~~~dl~~~v~~LngpLPvYHPqfL~q~l~~Gk~~lv~~IL~~L~~~L~~~~~~~--i~~--~-~~~ 230 (631)
T PF12234_consen 165 ---------SRKILPNWDLFELVSRLNGPLPVYHPQFLIQLLLSGKFKLVKKILLHLFKCLRFLDEGE--ISD--L-DSF 230 (631)
T ss_pred ---------ccccCccCCHHHHHHHhCCCCCCcCHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccc--ccc--c-ccc
Confidence 00111227899999999999999999999999999999999999999999999865321 111 1 124
Q ss_pred cccchhhhhcccccCCCCCCCccccCCCcccchhhhhhccccccccCCCCCCCchhhhhHHHHhhhccccccCCCHHHHH
Q 000080 1064 PQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFVELLQNVYELAGVTDAEKM 1143 (2389)
Q Consensus 1064 p~i~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~f~~~~~~~d~d~~~~~~~~~~~~s~l~E~L~k~~sLPgLT~~EQm 1143 (2389)
+.+++++|+....+.....+.. ..+...+. ..+.+..++++.++.++|.|+++ +||+||+|||+
T Consensus 231 l~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~----~~~~~~~f~~~~a~~L~e~L~~~-~LP~Lt~~EQ~ 294 (631)
T PF12234_consen 231 LGIPLEKFYESDESDSSVDKTE-----------SSSDQKDL----SDEEFSKFNEELADSLSEKLTKI-SLPGLTRHEQM 294 (631)
T ss_pred cCCcHHHHhccCcccccccccc-----------cccccccc----cccCccccCHHHHHHHHHHhhcC-CccCCCHHHHH
Confidence 6788888886543221110000 00000111 12223356788999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCccccchhhHHHHHHHHHhhhcCccccccccccccccchhhhcccCHHHHHhhcCC
Q 000080 1144 EILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP 1223 (2389)
Q Consensus 1144 ~Llalidtv~~i~k~~~~~~~~sLDenGlRFLl~~k~~ql~~lr~~~~~~~~~~~~Ls~r~i~WA~HSesqe~LL~~v~~ 1223 (2389)
+|++||||+++++++ +++||+||+|||+++|++++ .++. .++.+|++|+|+||+||++||+|++.+.+
T Consensus 295 ~L~~iie~v~~v~~~-----~~~lD~~g~Rfll~~r~~~~--~~~~-----~~~~~l~~~~i~WA~hS~~qe~Ll~~~~~ 362 (631)
T PF12234_consen 295 TLLAIIETVAEVEKN-----RRSLDENGLRFLLSVRLHQL--HRKS-----LEQSSLSTRDIAWAFHSDSQEELLSLVPP 362 (631)
T ss_pred HHHHHHHHHHHhhhc-----ccCCChhHHHHHHHHHHHHh--hccc-----ccccCcCHHHHHHHHhccCHHHHHHHhhh
Confidence 999999999999976 68999999999999998653 2221 34458999999999999999999998865
Q ss_pred CC-CCHHHHHHcCcEEEEeChHHHHHHHHHHHHHHHhc--cCCcchhHHHHHHhcchHHHHHHHhcccCCC-chhHHhHh
Q 000080 1224 NE-PTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK--KKDPKDCALLYIALNRIQVLAGLFKISKDEK-DKPLVGFL 1299 (2389)
Q Consensus 1224 ~~-~sW~~~r~~Gv~~Wl~~~~~Lr~~~EkIAr~ey~~--~kDP~dcaLfYlAL~Kk~vL~gL~k~~~~~k-~~~m~~FL 1299 (2389)
.. ++|+++|++||+||+++.+.||+++|+|||++|++ +|||++|||||+|||||+||+||||++.+++ +++|.+||
T Consensus 363 ~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~~~~~k~~~Fl 442 (631)
T PF12234_consen 363 QIKLSWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWHKEQQKMAKFL 442 (631)
T ss_pred hccCCHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcccccHHHHHHH
Confidence 43 79999999999999999999999999999999998 5999999999999999999999999988764 68999999
Q ss_pred hcccChHHHHHHHHhhHHHHhhcchhHHHHHHHHhcCChhHHHHHHHHhcCChhhhhhhhhhhccCCChhhHhhHhhhcc
Q 000080 1300 SRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFIL 1379 (2389)
Q Consensus 1300 snDFse~RWr~AAlKNAyaLLsK~Ry~~AAAFFLLAg~lkDAV~Vc~~~L~D~qLAi~IaRLyEgd~gp~l~~lL~~~vL 1379 (2389)
+|||+|||||+||+||||||||||||++|||||||||+++|||+||++||+|+||||+||||||||+||+++++|+++||
T Consensus 443 ~ndF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vL 522 (631)
T PF12234_consen 443 SNDFTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVL 522 (631)
T ss_pred hhcCCChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCChhHHHHHHHHhCChhHHHHHHhcCccccccccccc-----cCCCccCCChHHHHHHHHhhccccchhhhccc
Q 000080 1380 PSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFAL-----SSNSVAFMDPSIGLYCLMLANKNSMRNAIGEK 1454 (2389)
Q Consensus 1380 p~a~~~gDrwL~S~a~W~L~~~~~Av~~Ll~~p~~~~~~~s~l-----~s~~~~f~DPaL~l~~~~L~sk~~~r~~~g~~ 1454 (2389)
|.|.++|||||+||+||+||||++|+++|++.+...+.+.+.. .++++..+||+|+++|++||+|+ +++++|..
T Consensus 523 p~a~~~~d~wl~s~~~W~L~~~~~ai~~Li~~~~~~~~~~~~~~~~~~~~~sfl~~dp~L~~ly~~Lr~k~-~~~~~g~~ 601 (631)
T PF12234_consen 523 PEAIKEGDRWLASWAFWMLGDYDEAIRALISPPIDLLNESPLSPSSPCNSKSFLVDDPALVVLYQQLRSKN-LQTLKGAS 601 (631)
T ss_pred ccccccCCHHHHHHHHHhcCCHHHHHHHHhcCccccccccccccccccccccccCCCcHHHHHHHHHHHhc-ccccchhc
Confidence 9999999999999999999999999999998887765443322 23355567999999999999996 99999999
Q ss_pred hhhhhHHHHHHHHHHH-HHhcCCChhhhhc
Q 000080 1455 NAAILGRWAALMRATA-LNRCGLPLEALDC 1483 (2389)
Q Consensus 1455 ~~~~~~r~~~l~~a~~-l~RmGC~lLALdl 1483 (2389)
++...+||.|++++++ |+|||||+|||+|
T Consensus 602 ~i~~~~E~~fvl~~a~~y~RmGCd~LaL~L 631 (631)
T PF12234_consen 602 KISPKEEFEFVLRVARIYDRMGCDLLALSL 631 (631)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCchhhccC
Confidence 9999999988888766 8999999999986
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=284.98 Aligned_cols=165 Identities=25% Similarity=0.499 Sum_probs=146.2
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCCCCcEEEe--cCCeEEEEeeCCCCCCCCccceeeEEec--ccceEEEEeecCCCCeE
Q 000080 85 RQVFALSDNSLPVTSISWSPETPSIGQLAAA--SENCIFVFAHDSASSKGSFCWSQNAILV--QGTKVEAIEWTGSGDGI 160 (2389)
Q Consensus 85 ~Qviegh~d~~dVk~VaWSPd~~~~GeIaAS--yDntIRVw~~d~~~~kgd~~W~~~~tL~--hssTV~sIAWSpdG~rL 160 (2389)
-|.++||.+ +||.|||||- .|.|+|+ .|++||||...+ ...|.|+.+|. |+++||+|||+|+|++|
T Consensus 7 ~~~~~gh~~--r~W~~awhp~---~g~ilAscg~Dk~vriw~~~~-----~~s~~ck~vld~~hkrsVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 7 EQKLSGHKD--RVWSVAWHPG---KGVILASCGTDKAVRIWSTSS-----GDSWTCKTVLDDGHKRSVRSVAWSPHGRYL 76 (312)
T ss_pred EEeecCCCC--cEEEEEeccC---CceEEEeecCCceEEEEecCC-----CCcEEEEEeccccchheeeeeeecCCCcEE
Confidence 478899988 9999999992 3778875 479999998761 22599999995 89999999999999999
Q ss_pred EEEecc--eEEeeccCCcEEEEEEeeccccceEE-EEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCcccee
Q 000080 161 VAGGME--TVLWKKKNTLWEIAWKFKENYPQNLV-SATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIK 236 (2389)
Q Consensus 161 aSggdD--V~IW~~~~s~Wecvwt~~~~~~~~iv-svaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ 236 (2389)
|++|+| +.||+...+.|||+.++ ++|+++| +|+||++|. +|||+++ |+||||+.+++.+|++
T Consensus 77 a~aSFD~t~~Iw~k~~~efecv~~l--EGHEnEVK~Vaws~sG~~LATCSRD------------KSVWiWe~deddEfec 142 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGEFECVATL--EGHENEVKCVAWSASGNYLATCSRD------------KSVWIWEIDEDDEFEC 142 (312)
T ss_pred EEeeccceEEEeecCCCceeEEeee--eccccceeEEEEcCCCCEEEEeeCC------------CeEEEEEecCCCcEEE
Confidence 999999 99999999999999775 5678888 899999999 9999998 7899999997777776
Q ss_pred --ecccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeec
Q 000080 237 --LELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMD 286 (2389)
Q Consensus 237 --ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d 286 (2389)
+.+.|+|||++|.||| ..++|+|||||+|||+|++.+
T Consensus 143 ~aVL~~HtqDVK~V~WHP-------------t~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHP-------------TEDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred EeeeccccccccEEEEcC-------------CcceeEEeccCCeEEEEeecC
Confidence 6899999999999999 368999999999999999886
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=267.71 Aligned_cols=201 Identities=18% Similarity=0.276 Sum_probs=164.5
Q ss_pred CCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE-
Q 000080 36 APTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA- 114 (2389)
Q Consensus 36 ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA- 114 (2389)
+|-.++..++|+++ | ..+|=++-+.-|=.|=-+-...|++. .+|+.|.+ |||.|.||| +.+||+
T Consensus 103 GHEnEVK~Vaws~s--G-~~LATCSRDKSVWiWe~deddEfec~------aVL~~Htq--DVK~V~WHP----t~dlL~S 167 (312)
T KOG0645|consen 103 GHENEVKCVAWSAS--G-NYLATCSRDKSVWIWEIDEDDEFECI------AVLQEHTQ--DVKHVIWHP----TEDLLFS 167 (312)
T ss_pred ccccceeEEEEcCC--C-CEEEEeeCCCeEEEEEecCCCcEEEE------eeeccccc--cccEEEEcC----CcceeEE
Confidence 78999999999998 7 58888876666655511234568888 99999855 999999999 577774
Q ss_pred -ecCCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc--eEEeeccCCcEEEEEEeeccccce
Q 000080 115 -ASENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME--TVLWKKKNTLWEIAWKFKENYPQN 190 (2389)
Q Consensus 115 -SyDntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD--V~IW~~~~s~Wecvwt~~~~~~~~ 190 (2389)
|||||||+|+.++ +.+|.|.++|. |++|||+++|++.|+||+||++| |+||..- +.....|.+.
T Consensus 168 ~SYDnTIk~~~~~~-----dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-------~~~~~~~sr~ 235 (312)
T KOG0645|consen 168 CSYDNTIKVYRDED-----DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-------TDLSGMHSRA 235 (312)
T ss_pred eccCCeEEEEeecC-----CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-------cCcchhcccc
Confidence 6899999999872 44799999997 78899999999999999999998 9999754 3345788899
Q ss_pred EEEEeecCCCceEeeecccc---cccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccC
Q 000080 191 LVSATWSIEGPSATAASMSQ---LDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQR 267 (2389)
Q Consensus 191 ivsvaWSpdG~fATag~dik---f~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~ 267 (2389)
+|.++|. +|.|||+|+|-+ |++. +..+.|.|-. +...+++|.++||+|+|+| .++
T Consensus 236 ~Y~v~W~-~~~IaS~ggD~~i~lf~~s--~~~d~p~~~l-------~~~~~~aHe~dVNsV~w~p------------~~~ 293 (312)
T KOG0645|consen 236 LYDVPWD-NGVIASGGGDDAIRLFKES--DSPDEPSWNL-------LAKKEGAHEVDVNSVQWNP------------KVS 293 (312)
T ss_pred eEeeeec-ccceEeccCCCEEEEEEec--CCCCCchHHH-------HHhhhcccccccceEEEcC------------CCC
Confidence 9999999 999999999655 5555 3344555522 4446899999999999999 468
Q ss_pred ceEEeeecCCeEEEEEee
Q 000080 268 HVLLTCCLDGTVRLWCEM 285 (2389)
Q Consensus 268 nILAScSdDgTVRLW~e~ 285 (2389)
++|+||+|||+||+|...
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-26 Score=276.70 Aligned_cols=175 Identities=21% Similarity=0.355 Sum_probs=159.6
Q ss_pred ccccccccccceeeccccccccccccccCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc-eeeEecccCCC
Q 000080 2185 AFGIPGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-ATATYGVLPAA 2263 (2389)
Q Consensus 2185 ~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk-~l~Tl~vl~gh 2263 (2389)
-|-++|+|||..++|+|+|.+++.+| +|+.++| |+|+.||+.|+++|+|+|.+||+||++.+. |.++|.
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~F---eAH~DyI--R~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe----- 137 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTF---EAHSDYI--RSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE----- 137 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEe---eccccce--eeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-----
Confidence 47789999999999999999999999 7888877 999999999999999999999999999885 788884
Q ss_pred CCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC-CCCEEEEeecCC
Q 000080 2264 NVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSS 2341 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~-DGslLASAG~sS 2341 (2389)
||++.|++|+|+|.. ++|||||.|+|||+|++.+. .|.+|++||...|++|.|.|. |..+|.|| +
T Consensus 138 -----GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-----~~nfTl~gHekGVN~Vdyy~~gdkpylIsg---a 204 (794)
T KOG0276|consen 138 -----GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-----HPNFTLEGHEKGVNCVDYYTGGDKPYLISG---A 204 (794)
T ss_pred -----CcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-----CCceeeeccccCcceEEeccCCCcceEEec---C
Confidence 678999999999986 89999999999999999864 689999999999999999983 23488886 6
Q ss_pred CCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2342 NGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+|.||||||. ++.+|+++|+||++.|..+.|+|..-.+.|-
T Consensus 205 DD~tiKvWDy--Qtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 205 DDLTIKVWDY--QTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred CCceEEEeec--chHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 9999999998 7899999999999999999999998887763
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=241.93 Aligned_cols=288 Identities=19% Similarity=0.252 Sum_probs=201.6
Q ss_pred ccccccccCCCCCCCcceeec-CCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCC
Q 000080 27 FLRSEFIPTAPTRSTSTIDWL-PDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPE 105 (2389)
Q Consensus 27 ~~~~~~ip~ap~~~~~ai~wl-pD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd 105 (2389)
....+++||-|.|.|++..-+ .|++| .-|+|..|..+++++|++|... +++..|.+ +|+.+++||
T Consensus 4 ~~lk~~~~~lPst~Rg~~~~ig~dpkg-d~ilY~nGksv~ir~i~~~~~~----------~iYtEH~~--~vtVAkySP- 69 (603)
T KOG0318|consen 4 YELKETFASLPSTERGVPIIIGGDPKG-DNILYTNGKSVIIRNIDNPASV----------DIYTEHAH--QVTVAKYSP- 69 (603)
T ss_pred hhhhhhccCCCcccCCcceEeccCCCC-CeEEEeCCCEEEEEECCCccce----------eeeccccc--eeEEEEeCC-
Confidence 456899999999999999998 99999 6999999999999999998876 45556766 999999999
Q ss_pred CCCCCcEEEecC--CeEEEEeeCCCCCCCCccceeeEEe-cccceEEEEeecCCCCeEEEEecc------eEEeeccCCc
Q 000080 106 TPSIGQLAAASE--NCIFVFAHDSASSKGSFCWSQNAIL-VQGTKVEAIEWTGSGDGIVAGGME------TVLWKKKNTL 176 (2389)
Q Consensus 106 ~~~~GeIaASyD--ntIRVw~~d~~~~kgd~~W~~~~tL-~hssTV~sIAWSpdG~rLaSggdD------V~IW~~~~s~ 176 (2389)
+|+.+||+| ++||||.-.. .+-..+..+ +..++|-+|+|+++|+||+++|++ +-+|+.+++.
T Consensus 70 ---sG~yiASGD~sG~vRIWdtt~------~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~Sv 140 (603)
T KOG0318|consen 70 ---SGFYIASGDVSGKVRIWDTTQ------KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSV 140 (603)
T ss_pred ---CceEEeecCCcCcEEEEeccC------cceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcc
Confidence 699999987 9999997651 022333333 478999999999999999999996 5599976555
Q ss_pred EEEEEEe--------------------------------------eccccceEEEEeecCCCc-eEeeecccccccCCCC
Q 000080 177 WEIAWKF--------------------------------------KENYPQNLVSATWSIEGP-SATAASMSQLDLLGPK 217 (2389)
Q Consensus 177 Wecvwt~--------------------------------------~~~~~~~ivsvaWSpdG~-fATag~dikf~~~~~~ 217 (2389)
.|...+. ..+|..=+.+|.+||||. |||+|.|.|
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk------- 213 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK------- 213 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-------
Confidence 4443322 223333333999999999 999999987
Q ss_pred CCCceeEEEeeCCCccceee----cccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeecCCcccc-
Q 000080 218 EAGKCVFICCSDGKSEYIKL----ELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRK- 292 (2389)
Q Consensus 218 ~~~kpV~V~~~dg~~~~~~v----e~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d~Gk~kk- 292 (2389)
+..+||+.+.... ..+|...|++++|+| |+++ +||+|.|.|+|||+...+-..|+
T Consensus 214 -------i~iyDGktge~vg~l~~~~aHkGsIfalsWsP--------Ds~~-----~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 214 -------IYIYDGKTGEKVGELEDSDAHKGSIFALSWSP--------DSTQ-----FLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred -------EEEEcCCCccEEEEecCCCCccccEEEEEECC--------CCce-----EEEecCCceEEEEEeeccceEEEe
Confidence 3345666543322 358999999999999 9999 99999999999999776533333
Q ss_pred -cccccCC-------CCccceeEEEEEEEeecccccCCCCCCeEEEeeccccceeeccCCccceecccccccccceeeee
Q 000080 293 -VAKDTND-------HKTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEW 364 (2389)
Q Consensus 293 -~~~~~~d-------~~~~~~sF~vaA~I~~~~~~~~~l~~~~~v~W~~~~~~vf~~~~e~~~~~~s~~~~~~~v~~~eW 364 (2389)
.++.+-| ||....+-.+--.||+=+ ..| +.+..+.=.-||..---+--..+.++.++.|| -..++|
T Consensus 274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln-~~d--~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD---G~I~~W 347 (603)
T KOG0318|consen 274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLN-PSD--PSVLKVISGHNKSITALTVSPDGKTIYSGSYD---GHINSW 347 (603)
T ss_pred ecCCchhceEEEEEEeCCeEEEEEcCcEEEEec-ccC--CChhheecccccceeEEEEcCCCCEEEeeccC---ceEEEE
Confidence 3333333 344446666666666322 122 22333433444432211111113456666665 356778
Q ss_pred eEeecC
Q 000080 365 LVGYGP 370 (2389)
Q Consensus 365 ~~~~~P 370 (2389)
..+-+-
T Consensus 348 ~~~~g~ 353 (603)
T KOG0318|consen 348 DSGSGT 353 (603)
T ss_pred ecCCcc
Confidence 765443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-23 Score=242.09 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=152.1
Q ss_pred ccccceeeccccccccccccccCCC--CcC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCC
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPPA--TVE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVP 2266 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~a--tv~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p 2266 (2389)
++.+++++ .+|.+=|+|+...... ..+ .-+|.+|+|+|||.+++|||.|..-|+||+++|+++..|.
T Consensus 272 sG~~L~Ta-sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-------- 342 (459)
T KOG0272|consen 272 SGKFLGTA-SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-------- 342 (459)
T ss_pred CCceeeec-ccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec--------
Confidence 34567778 9999999998841111 111 2366999999999999999999999999999999998884
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeE
Q 000080 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2389)
Q Consensus 2267 ~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TV 2346 (2389)
||...|.+|+|||+|..|||||.|+|+|+||++.. +++.+..+|++-|+.|.|+|+.|.+|+|+ |.|+|+
T Consensus 343 --gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-----~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta---syD~t~ 412 (459)
T KOG0272|consen 343 --GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-----SELYTIPAHSNLVSQVKYSPQEGYFLVTA---SYDNTV 412 (459)
T ss_pred --ccccceeeEeECCCceEEeecCCCCcEEEeeeccc-----ccceecccccchhhheEecccCCeEEEEc---ccCcce
Confidence 68899999999999999999999999999999953 56899999999999999999899999997 589999
Q ss_pred EEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2347 VVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2347 rLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+||.. .+..++++|+||++.|-+++.+++|.++++-
T Consensus 413 kiWs~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 413 KIWST--RTWSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred eeecC--CCcccchhhcCCccceEEEEeccCCceEEEe
Confidence 99998 5778899999999999999999999998863
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=240.60 Aligned_cols=173 Identities=18% Similarity=0.192 Sum_probs=150.9
Q ss_pred cc-ccccceeeccccccccccccc--cCCCCcCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCC
Q 000080 2189 PG-YAGIGASALGWETQDDFEDYV--DPPATVEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA 2263 (2389)
Q Consensus 2189 ~g-~~~~~Asg~~~d~~~~~~~~~--d~~atv~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh 2263 (2389)
|+ .+.-+|++ +.|.+.++|.+. .++++++. .+|.+|+|||+|++|+|+|.|.|-||||+.+++.+.-.
T Consensus 227 P~~~~~~lat~-s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q------ 299 (459)
T KOG0272|consen 227 PVDSDLNLATA-SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ------ 299 (459)
T ss_pred cCCCccceeee-ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh------
Confidence 55 45578888 999999999986 34455554 57799999999999999999999999999999875432
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2264 NVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
-||+..|.+|+|.|||..+|||+.|..=|+||+++| +++..+.||.+.|.+|+|+| +|..|||+ |.|
T Consensus 300 ----EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg-----r~im~L~gH~k~I~~V~fsP-NGy~lATg---s~D 366 (459)
T KOG0272|consen 300 ----EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG-----RCIMFLAGHIKEILSVAFSP-NGYHLATG---SSD 366 (459)
T ss_pred ----cccccccceeEecCCCceeeccCccchhheeecccC-----cEEEEecccccceeeEeECC-CceEEeec---CCC
Confidence 267899999999999999999999999999999998 47889999999999999999 99999996 699
Q ss_pred CeEEEeeCCCCCCCceEEEEeecCcEEEEeecc-cchhhhc
Q 000080 2344 INVVVWDTLAPPTSSRASITCHEGLYDLFLPLK-LLNFALS 2383 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~-~~~~~~s 2383 (2389)
+|+||||+. ..+++.++.+|++-|+-|-++| -|.|.++
T Consensus 367 nt~kVWDLR--~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 367 NTCKVWDLR--MRSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred CcEEEeeec--ccccceecccccchhhheEecccCCeEEEE
Confidence 999999984 4566999999999999999998 6777665
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=219.88 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=122.0
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|-+++|+|+|..|||||.|.|+||||..+.....|.+ ||.+||.+|++||||+.||||+.||+|+|||.
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K----------gH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK----------GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec----------CCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 56889999999999999999999999999988888874 67899999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecC----CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITS----SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~----DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
++|+ +...++.||..+|.+++|-|- .+++|||+ |.|++|||||+. .++|+.++.||++.|+||--
T Consensus 187 ktg~----~~g~~l~gH~K~It~Lawep~hl~p~~r~las~---skDg~vrIWd~~--~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 187 KTGQ----QIGRALRGHKKWITALAWEPLHLVPPCRRLASS---SKDGSVRIWDTK--LGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred CCCC----cccccccCcccceeEEeecccccCCCccceecc---cCCCCEEEEEcc--CceEEEEeccCccceEEEEE
Confidence 9985 456889999999999999863 66799985 699999999983 57899999999999999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-20 Score=226.99 Aligned_cols=145 Identities=18% Similarity=0.277 Sum_probs=131.7
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeec-CCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEF-GKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl-~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
-.|+.++|+|||+++++|+.|++||+||+ .++.+++++. ||...|++++|+|+|+.++||+.|+|||+|
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~----------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK----------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec----------CCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 46799999999999999999999999999 5668888884 578999999999999999999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCC--ceEEEEeecCc--EEEEee
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGL--YDLFLP 2374 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~--~v~sL~GH~~~--V~svA~ 2374 (2389)
|++++ ++...+.+|+..|++++|++ ||++|+++ +.|++|+|||+ .++. ++..+.+|++. ++++.+
T Consensus 274 d~~~~-----~~~~~l~~hs~~is~~~f~~-d~~~l~s~---s~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~f 342 (456)
T KOG0266|consen 274 DVRTG-----ECVRKLKGHSDGISGLAFSP-DGNLLVSA---SYDGTIRVWDL--ETGSKLCLKLLSGAENSAPVTSVQF 342 (456)
T ss_pred eccCC-----eEEEeeeccCCceEEEEECC-CCCEEEEc---CCCccEEEEEC--CCCceeeeecccCCCCCCceeEEEE
Confidence 99986 58899999999999999999 99999996 57999999998 4566 67899999988 999999
Q ss_pred cccchhhhccc
Q 000080 2375 LKLLNFALSKC 2385 (2389)
Q Consensus 2375 ~~~~~~~~s~~ 2385 (2389)
+|+|.++++..
T Consensus 343 sp~~~~ll~~~ 353 (456)
T KOG0266|consen 343 SPNGKYLLSAS 353 (456)
T ss_pred CCCCcEEEEec
Confidence 99999988754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=231.58 Aligned_cols=144 Identities=24% Similarity=0.287 Sum_probs=133.9
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
.+|..++|+|+.++|+|+|+|++||||.+.+-.++..|+ ||..+|+.|+|+|-|-+|||||.|+|-+||.
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~----------GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK----------GHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEec----------CCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 467999999999999999999999999999999999985 4667899999999999999999999999998
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
.... +|++.+.||.+.|.+|+|+| ++.++||| |.|+|||+||+ .+|.+|+.|.||.+.|.+|+++|.|+
T Consensus 522 ~d~~-----~PlRifaghlsDV~cv~FHP-Ns~Y~aTG---SsD~tVRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 522 TDHN-----KPLRIFAGHLSDVDCVSFHP-NSNYVATG---SSDRTVRLWDV--STGNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred cccC-----CchhhhcccccccceEEECC-cccccccC---CCCceEEEEEc--CCCcEEEEecCCCCceEEEEEcCCCc
Confidence 8753 79999999999999999999 89999995 69999999998 68999999999999999999999999
Q ss_pred hhhcc
Q 000080 2380 FALSK 2384 (2389)
Q Consensus 2380 ~~~s~ 2384 (2389)
|..|-
T Consensus 591 ~LaSg 595 (707)
T KOG0263|consen 591 YLASG 595 (707)
T ss_pred eEeec
Confidence 98763
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=203.27 Aligned_cols=225 Identities=18% Similarity=0.185 Sum_probs=174.4
Q ss_pred ceeeeeecccCCCcceEEeecccceEEeeecccccccccccceeccCCCCCCCCCCCcccccCCccCCCccccCCCC-cc
Q 000080 2082 ELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTPVPTFVSPGVGLGSNKG-AH 2160 (2389)
Q Consensus 2082 ~~~~a~~~n~~n~~~~~~a~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~s~~~g~~~~~g-~~ 2160 (2389)
+-|.+++|..-|++.++=||.-|-++-.++.-. ||.- |+-..+.+| +|
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d--------------d~~~-----------------G~~~r~~~GHsH 64 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSD--------------DIKY-----------------GVPVRRLTGHSH 64 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEeccC--------------cccc-----------------Cceeeeeeccce
Confidence 457899999999988888888888855444322 3332 333667888 55
Q ss_pred cccCCcccccccccCCCccccCccccccccccccceeeccccccccccccccCCCCc--Cc--eeEEEEEEcCCCCeEEE
Q 000080 2161 LGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPATV--EN--ISTRAFSSHPLRPFFLV 2236 (2389)
Q Consensus 2161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~atv--~n--i~VrsVAFsPdG~~LAS 2236 (2389)
.--+.+-+ ..| -+..++ +||.+-|+|+......+. .+ --|-+|+|+||.+.|+|
T Consensus 65 ~v~dv~~s-------------~dg--------~~alS~-swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivS 122 (315)
T KOG0279|consen 65 FVSDVVLS-------------SDG--------NFALSA-SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVS 122 (315)
T ss_pred EecceEEc-------------cCC--------ceEEec-cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeec
Confidence 54433311 111 224566 999999999985432221 11 24589999999999999
Q ss_pred EeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEEEeeCCCCCccCcccceee
Q 000080 2237 GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESC 2314 (2389)
Q Consensus 2237 GS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl 2314 (2389)
||.|.||+|||+ -|.|..|.. .+ +|.++|.+|.|+|. .-.|+++|.|+|||+||+++- +...++
T Consensus 123 GSrDkTiklwnt-~g~ck~t~~---~~-----~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-----~l~~~~ 188 (315)
T KOG0279|consen 123 GSRDKTIKLWNT-LGVCKYTIH---ED-----SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-----QLRTTF 188 (315)
T ss_pred CCCcceeeeeee-cccEEEEEe---cC-----CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-----chhhcc
Confidence 999999999998 578887764 11 34799999999999 679999999999999999863 456788
Q ss_pred eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2315 ~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
.||++.++.+++|| ||.+.|+|| .|+.+-|||+ ..++++++|. |-..|.+++|+|---|
T Consensus 189 ~gh~~~v~t~~vSp-DGslcasGg---kdg~~~LwdL--~~~k~lysl~-a~~~v~sl~fspnryw 247 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSP-DGSLCASGG---KDGEAMLWDL--NEGKNLYSLE-AFDIVNSLCFSPNRYW 247 (315)
T ss_pred ccccccEEEEEECC-CCCEEecCC---CCceEEEEEc--cCCceeEecc-CCCeEeeEEecCCcee
Confidence 99999999999999 999999975 9999999998 4678899998 8889999999997544
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=227.00 Aligned_cols=139 Identities=22% Similarity=0.365 Sum_probs=118.0
Q ss_pred eeeccccccccccccc--cCCCCcC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCC
Q 000080 2196 ASALGWETQDDFEDYV--DPPATVE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYAL 2271 (2389)
Q Consensus 2196 Asg~~~d~~~~~~~~~--d~~atv~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~ 2271 (2389)
|++ +.|.+.++|... +|.+-.- .--|.+++|||+..++|+||.|.|||+||+.+|..++.|. ||.
T Consensus 509 ata-s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~----------GH~ 577 (707)
T KOG0263|consen 509 ATA-SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT----------GHK 577 (707)
T ss_pred Eec-CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec----------CCC
Confidence 455 566666777542 3333311 1234889999999999999999999999999999999984 678
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2272 ~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
+.|.+|+|||+|++||||+.||.|++||+.+| +++.++.+|++.|+++.|+. ||.+||++| .|++|+|||+
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-----~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg---~DnsV~lWD~ 648 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANG-----SLVKQLKGHTGTIYSLSFSR-DGNVLASGG---ADNSVRLWDL 648 (707)
T ss_pred CceEEEEEcCCCceEeecccCCcEEEEEcCCC-----cchhhhhcccCceeEEEEec-CCCEEEecC---CCCeEEEEEc
Confidence 99999999999999999999999999999987 47888999999999999999 999999974 8999999998
Q ss_pred CCC
Q 000080 2352 LAP 2354 (2389)
Q Consensus 2352 l~~ 2354 (2389)
...
T Consensus 649 ~~~ 651 (707)
T KOG0263|consen 649 TKV 651 (707)
T ss_pred hhh
Confidence 543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-19 Score=222.80 Aligned_cols=174 Identities=14% Similarity=0.184 Sum_probs=152.9
Q ss_pred cccccccceeeccccccccccccccCCCCcC-------------ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCcee
Q 000080 2188 IPGYAGIGASALGWETQDDFEDYVDPPATVE-------------NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT 2254 (2389)
Q Consensus 2188 ~~g~~~~~Asg~~~d~~~~~~~~~d~~atv~-------------ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l 2254 (2389)
-.|++...++| +-|-+.++|++.+...+.. .=.|.+|+.+|+.++|||||.|.|.|||++.+++..
T Consensus 420 ~~~~asffvsv-S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~ 498 (775)
T KOG0319|consen 420 SKLGASFFVSV-SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL 498 (775)
T ss_pred cccCccEEEEe-cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence 45667778999 8888899998865212211 114688999999999999999999999999988888
Q ss_pred eEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEE
Q 000080 2255 ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVI 2334 (2389)
Q Consensus 2255 ~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslL 2334 (2389)
.++. ||...|++|.|+|..+.+||+|.|+|||||.+.+. .++.++.||+..|..+.|.. +|+.|
T Consensus 499 ~vLs----------GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eGH~~aVlra~F~~-~~~ql 562 (775)
T KOG0319|consen 499 GVLS----------GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEGHTSAVLRASFIR-NGKQL 562 (775)
T ss_pred EEee----------CCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecCccceeEeeeeee-CCcEE
Confidence 8884 67899999999999999999999999999999987 47999999999999999999 88999
Q ss_pred EEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2335 AAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2335 ASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
.|+| .||-||||++ .++.|+++|..|++.||.++-+++++++++
T Consensus 563 iS~~---adGliKlWni--kt~eC~~tlD~H~DrvWaL~~~~~~~~~~t 606 (775)
T KOG0319|consen 563 ISAG---ADGLIKLWNI--KTNECEMTLDAHNDRVWALSVSPLLDMFVT 606 (775)
T ss_pred Eecc---CCCcEEEEec--cchhhhhhhhhccceeEEEeecCccceeEe
Confidence 9975 8999999998 588999999999999999999999998874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=199.24 Aligned_cols=167 Identities=18% Similarity=0.230 Sum_probs=133.7
Q ss_pred ccccccceeeccccccccccccccCCCCcCceeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~atv~ni~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
||++||-.----=++-+++..|..+... |-+++++| +++.++||+.|++.+|||++.|.++++|.
T Consensus 161 T~SGD~TCalWDie~g~~~~~f~GH~gD-----V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~--------- 226 (343)
T KOG0286|consen 161 TGSGDMTCALWDIETGQQTQVFHGHTGD-----VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE--------- 226 (343)
T ss_pred ecCCCceEEEEEcccceEEEEecCCccc-----EEEEecCCCCCCeEEecccccceeeeeccCcceeEeec---------
Confidence 5555555544222233344444333333 38899999 99999999999999999999999999983
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
||...|.+|+|.|+|.-||+||+|+|.|++|++.. ++ -.+++...-...|++|+||- +|++|.++ ..|.++.
T Consensus 227 -ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~--~a~ys~~~~~~gitSv~FS~-SGRlLfag---y~d~~c~ 298 (343)
T KOG0286|consen 227 -GHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QE--LAVYSHDSIICGITSVAFSK-SGRLLFAG---YDDFTCN 298 (343)
T ss_pred -ccccccceEEEccCCCeeeecCCCceeEEEeecCC-cE--EeeeccCcccCCceeEEEcc-cccEEEee---ecCCcee
Confidence 67899999999999999999999999999999986 21 23333344457899999999 99999874 4899999
Q ss_pred EeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2348 VWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2348 LWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
+||++ .++.+..|.||+|+|.||..+|+|-
T Consensus 299 vWDtl--k~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 299 VWDTL--KGERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred Eeecc--ccceEEEeeccCCeeEEEEECCCCc
Confidence 99997 4567899999999999999999984
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=203.05 Aligned_cols=163 Identities=17% Similarity=0.165 Sum_probs=137.7
Q ss_pred ccceeeccccccccccccc--cCCCCcCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYV--DPPATVEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~--d~~atv~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
..+|+| +=|++.|+|+.. -|..|... ..|-+|+|+|||+.||||+-||+|+|||..+|+++-. +.+
T Consensus 128 ~~l~tG-sGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~---------~l~ 197 (480)
T KOG0271|consen 128 SRLVTG-SGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR---------ALR 197 (480)
T ss_pred ceEEec-CCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc---------ccc
Confidence 457788 668999999874 33333332 4679999999999999999999999999999987532 124
Q ss_pred CCCCCEEEEEEC-----CCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2269 YALASISALQFD-----HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2269 GH~~~V~sVaFS-----PDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
||..+|++++|- |..++|||+|.||+|+|||+..+ ++++++.||+..|.+|.+-. + .+|+|+ |.|
T Consensus 198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-----~~~~~lsgHT~~VTCvrwGG-~-gliySg---S~D 267 (480)
T KOG0271|consen 198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-----TCVRTLSGHTASVTCVRWGG-E-GLIYSG---SQD 267 (480)
T ss_pred CcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-----eEEEEeccCccceEEEEEcC-C-ceEEec---CCC
Confidence 788999999986 67789999999999999999975 57899999999999999986 3 688885 799
Q ss_pred CeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2344 INVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
+|||+|+.. .|.+++.|.||..+|+.+|.+++
T Consensus 268 rtIkvw~a~--dG~~~r~lkGHahwvN~lalsTd 299 (480)
T KOG0271|consen 268 RTIKVWRAL--DGKLCRELKGHAHWVNHLALSTD 299 (480)
T ss_pred ceEEEEEcc--chhHHHhhcccchheeeeeccch
Confidence 999999984 58899999999999999998854
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=200.88 Aligned_cols=173 Identities=14% Similarity=0.135 Sum_probs=145.4
Q ss_pred ccccccceeecccccccccccccc-------CCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccC
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVD-------PPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLP 2261 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d-------~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~ 2261 (2389)
.+++..+|+- +-|.+..+|++.. ...+- ..|.+|+|=|.|.+|+|+|.|.||+.||+.+|.|+.+|.
T Consensus 159 ~a~Gk~l~tc-SsDl~~~LWd~~~~~~c~ks~~gh~--h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~--- 232 (406)
T KOG0295|consen 159 DASGKYLATC-SSDLSAKLWDFDTFFRCIKSLIGHE--HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP--- 232 (406)
T ss_pred ecCccEEEec-CCccchhheeHHHHHHHHHHhcCcc--cceeeEEEEecCCeeeecccccceeEEecccceeEEecc---
Confidence 3344555665 5566677777642 22222 245999999999999999999999999999999999983
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC------------
Q 000080 2262 AANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS------------ 2329 (2389)
Q Consensus 2262 gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~------------ 2329 (2389)
||..+|+.|+.+-||..+||+|.|.||++|=++++ .+...+.+|+..|.+++|.|.
T Consensus 233 -------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~-----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 233 -------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK-----QCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred -------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccc-----hhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 56789999999999999999999999999999986 355667889999999999874
Q ss_pred --CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2330 --SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2330 --DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.|+.++++ |.|+|||+||+ +++.|+-+|.||.++|+.+|++|.|.|++|-
T Consensus 301 ~~~~~~l~s~---SrDktIk~wdv--~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc 352 (406)
T KOG0295|consen 301 TNGGQVLGSG---SRDKTIKIWDV--STGMCLFTLVGHDNWVRGVAFSPGGKYILSC 352 (406)
T ss_pred CCCccEEEee---cccceEEEEec--cCCeEEEEEecccceeeeeEEcCCCeEEEEE
Confidence 23588775 79999999998 7999999999999999999999999999984
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-18 Score=211.73 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=130.0
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc--eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk--~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
.|..+.|||+|+++++++.|++|++|+..+++ ..+++ .||...|+.++|+|||+.+++|+.|+|||+|
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l----------~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL----------SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc----------cccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 45789999999999999999999999997777 33333 3677999999999999999999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
|++..+ +.++++.||+..|++++|+| +|++|+|| +.|+||||||+ .+++++..|.+|.++|++++++++|
T Consensus 231 d~~~~~----~~~~~l~gH~~~v~~~~f~p-~g~~i~Sg---s~D~tvriWd~--~~~~~~~~l~~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 231 DLKDDG----RNLKTLKGHSTYVTSVAFSP-DGNLLVSG---SDDGTVRIWDV--RTGECVRKLKGHSDGISGLAFSPDG 300 (456)
T ss_pred eccCCC----eEEEEecCCCCceEEEEecC-CCCEEEEe---cCCCcEEEEec--cCCeEEEeeeccCCceEEEEECCCC
Confidence 995543 57899999999999999999 88999996 69999999998 5689999999999999999999999
Q ss_pred hhhhccc
Q 000080 2379 NFALSKC 2385 (2389)
Q Consensus 2379 ~~~~s~~ 2385 (2389)
+..++-+
T Consensus 301 ~~l~s~s 307 (456)
T KOG0266|consen 301 NLLVSAS 307 (456)
T ss_pred CEEEEcC
Confidence 9988765
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-18 Score=212.24 Aligned_cols=176 Identities=17% Similarity=0.173 Sum_probs=145.1
Q ss_pred cccceeeccccccccccccc------cCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYV------DPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~------d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
..+-.|| |.|-.+++|.|. ....++++| |++.||+.-|+|+|+|+|.|||||+|.+++|+.+++
T Consensus 63 qplFVSG-GDDykIkVWnYk~rrclftL~GHlDYV--Rt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt------- 132 (1202)
T KOG0292|consen 63 QPLFVSG-GDDYKIKVWNYKTRRCLFTLLGHLDYV--RTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT------- 132 (1202)
T ss_pred CCeEEec-CCccEEEEEecccceehhhhcccccee--EEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-------
Confidence 3566888 999999999885 233445554 999999999999999999999999999999999985
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCccc------------------------ceeeeecCCCe
Q 000080 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP------------------------MESCLCFSSHA 2321 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~------------------------l~tl~gHs~~V 2321 (2389)
||.++|+|-+|.|.-..++|||.|.|||+||+.--.+.+..| -.-+.||...|
T Consensus 133 ---GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV 209 (1202)
T KOG0292|consen 133 ---GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV 209 (1202)
T ss_pred ---cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc
Confidence 577999999999999999999999999999995311000000 13478999999
Q ss_pred eEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2322 MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2322 ~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+-+||+| .-.+|+|| ++|+.||||.+.....=.+-+..||.|.|.|+-++|.-+-+||.
T Consensus 210 NwaAfhp-TlpliVSG---~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 210 NWAAFHP-TLPLIVSG---ADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN 268 (1202)
T ss_pred ceEEecC-CcceEEec---CCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEec
Confidence 9999999 88899986 59999999999533222277889999999999999999988885
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=191.91 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=128.6
Q ss_pred eccccccccccccccCCCCcCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEE
Q 000080 2198 ALGWETQDDFEDYVDPPATVEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS 2275 (2389)
Q Consensus 2198 g~~~d~~~~~~~~~d~~atv~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~ 2275 (2389)
.+.|+-+-+-+.|-.+.+.+.+ =.|..++.++||++.+|||.|+++|+||+.+|+..+.|. ||...|.
T Consensus 40 ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~----------GH~~dVl 109 (315)
T KOG0279|consen 40 IIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV----------GHTKDVL 109 (315)
T ss_pred EEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE----------ecCCceE
Confidence 3445555444444333333322 245788999999999999999999999999998888774 5778999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeee--cCCCeeEEEEecCC-CCEEEEeecCCCCCeEEEeeCC
Q 000080 2276 ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC--FSSHAMDVSYITSS-GSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2276 sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g--Hs~~V~sVAFSP~D-GslLASAG~sS~D~TVrLWD~l 2352 (2389)
+|+||||.+.+.|||.|+||+|||+-.+ +..+... |...|++|.|+|.. ..+|+++ |.|+|||+||+
T Consensus 110 sva~s~dn~qivSGSrDkTiklwnt~g~------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~---s~DktvKvWnl- 179 (315)
T KOG0279|consen 110 SVAFSTDNRQIVSGSRDKTIKLWNTLGV------CKYTIHEDSHREWVSCVRFSPNESNPIIVSA---SWDKTVKVWNL- 179 (315)
T ss_pred EEEecCCCceeecCCCcceeeeeeeccc------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEc---cCCceEEEEcc-
Confidence 9999999999999999999999999753 3344433 37899999999952 5788887 59999999998
Q ss_pred CCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2353 APPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2353 ~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
.+-+..+.+.||++-++.++.||||--
T Consensus 180 -~~~~l~~~~~gh~~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 180 -RNCQLRTTFIGHSGYVNTVTVSPDGSL 206 (315)
T ss_pred -CCcchhhccccccccEEEEEECCCCCE
Confidence 344457899999999999999999953
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=206.39 Aligned_cols=146 Identities=16% Similarity=0.227 Sum_probs=125.8
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
.++.+++++|||+++|||++||.||+||..+|-|+.||. -|++.|++|+|+..|+.+.|+|.|||||.||
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt----------eHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT----------EHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec----------cCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 355899999999999999999999999999999999995 2679999999999999999999999999999
Q ss_pred CCCCCc---------------------------------------cCcccceeeeecCCCeeEEEEecCCCCEEEEeecC
Q 000080 2300 LEVGGR---------------------------------------SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS 2340 (2389)
Q Consensus 2300 l~tggr---------------------------------------s~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~s 2340 (2389)
+..... +.-+.+..+.||+++|.+++|+| +|+.|||+
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~--- 496 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASG--- 496 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEec---
Confidence 976521 11134556789999999999999 99999996
Q ss_pred CCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhh
Q 000080 2341 SNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2341 S~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~ 2381 (2389)
|.|+|||+||+.. ....+-+|+ +...|..|+++|+|+.+
T Consensus 497 SWDkTVRiW~if~-s~~~vEtl~-i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 497 SWDKTVRIWDIFS-SSGTVETLE-IRSDVLAVSFRPDGKEL 535 (893)
T ss_pred cccceEEEEEeec-cCceeeeEe-eccceeEEEEcCCCCeE
Confidence 7999999999974 334567777 88889999999999753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-17 Score=201.63 Aligned_cols=142 Identities=17% Similarity=0.253 Sum_probs=119.8
Q ss_pred eEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCc-------eeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeC
Q 000080 2221 STRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDK-------ATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAAL 2291 (2389)
Q Consensus 2221 ~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk-------~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~ 2291 (2389)
.|.+|+|+| ++++|||||.|++|++||+.++. .+.++ .||...|.+|+|+|++ +.||||+.
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L----------~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL----------QGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe----------cCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 469999999 89999999999999999997653 23444 2577899999999986 79999999
Q ss_pred CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcE-E
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLY-D 2370 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V-~ 2370 (2389)
|++|+|||++++ +....+.+|...|.+++|+| +|++|||+ +.|++|+|||+ .+++.+.++.+|.+.+ .
T Consensus 147 DgtVrIWDl~tg-----~~~~~l~~h~~~V~sla~sp-dG~lLatg---s~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 147 DMVVNVWDVERG-----KAVEVIKCHSDQITSLEWNL-DGSLLCTT---SKDKKLNIIDP--RDGTIVSSVEAHASAKSQ 215 (493)
T ss_pred CCEEEEEECCCC-----eEEEEEcCCCCceEEEEEEC-CCCEEEEe---cCCCEEEEEEC--CCCcEEEEEecCCCCcce
Confidence 999999999986 46678889999999999999 99999996 58999999998 4677789999998754 3
Q ss_pred EEeecccchhhhc
Q 000080 2371 LFLPLKLLNFALS 2383 (2389)
Q Consensus 2371 svA~~~~~~~~~s 2383 (2389)
.+...++++.+++
T Consensus 216 ~~~w~~~~~~ivt 228 (493)
T PTZ00421 216 RCLWAKRKDLIIT 228 (493)
T ss_pred EEEEcCCCCeEEE
Confidence 5666677666653
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=192.24 Aligned_cols=195 Identities=15% Similarity=0.196 Sum_probs=155.5
Q ss_pred CCCccccCccccccccccccceeeccccccccccccc-cCCCCcCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCC
Q 000080 2175 RPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYV-DPPATVEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKD 2251 (2389)
Q Consensus 2175 ~~~~~~~~~~~~~~~g~~~~~Asg~~~d~~~~~~~~~-d~~atv~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tG 2251 (2389)
.+-|+.| +.+| .+.+..+|.| .++...|+|.-. ....++.. .+|.++.|+-.|.+|+||+-|+|+-|||.-+|
T Consensus 233 ~~nkdVT-~L~W--n~~G~~LatG-~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 233 PSNKDVT-SLDW--NNDGTLLATG-SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CccCCcc-eEEe--cCCCCeEEEe-ecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 3445554 2445 4566789999 899999999764 22233332 58899999999999999999999999999888
Q ss_pred ceeeEec--ccCCCC--------------------------CC---CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2252 KATATYG--VLPAAN--------------------------VP---PPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2252 k~l~Tl~--vl~gh~--------------------------~p---~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
+..+-|. ..|+-. -| ..||.+.|.++.|+|.|..|||+|.|+|+|||..
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 7654442 111000 01 5689999999999999999999999999999998
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecC--------CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEE
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITS--------SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLF 2372 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~--------DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~sv 2372 (2389)
..+ .....+++|+..|+.+.++|. +|..||++ +.|+||++||+ ..+.++++|+.|+.+|.+|
T Consensus 389 ~~~-----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sa---s~dstV~lwdv--~~gv~i~~f~kH~~pVysv 458 (524)
T KOG0273|consen 389 GQS-----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASA---SFDSTVKLWDV--ESGVPIHTLMKHQEPVYSV 458 (524)
T ss_pred CCC-----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEe---ecCCeEEEEEc--cCCceeEeeccCCCceEEE
Confidence 765 356778899999999999983 34588887 48999999998 4678999999999999999
Q ss_pred eecccchhhhc
Q 000080 2373 LPLKLLNFALS 2383 (2389)
Q Consensus 2373 A~~~~~~~~~s 2383 (2389)
|++|+|++..|
T Consensus 459 afS~~g~ylAs 469 (524)
T KOG0273|consen 459 AFSPNGRYLAS 469 (524)
T ss_pred EecCCCcEEEe
Confidence 99999999865
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-17 Score=203.11 Aligned_cols=162 Identities=19% Similarity=0.255 Sum_probs=136.2
Q ss_pred ccccccccccCCCCc-----CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEE
Q 000080 2203 TQDDFEDYVDPPATV-----ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISAL 2277 (2389)
Q Consensus 2203 ~~~~~~~~~d~~atv-----~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sV 2277 (2389)
..+++|+|.=. .-+ +..+||.|+|||++++++||++|.+||+|+..+-+|+-|+ .||.++|+.+
T Consensus 31 G~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL----------~GHlDYVRt~ 99 (1202)
T KOG0292|consen 31 GVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL----------LGHLDYVRTV 99 (1202)
T ss_pred ceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh----------ccccceeEEe
Confidence 45677777410 001 1246799999999999999999999999999999998887 3788999999
Q ss_pred EECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC-----
Q 000080 2278 QFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL----- 2352 (2389)
Q Consensus 2278 aFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l----- 2352 (2389)
.|.+.=-++.|||+|.|||+||-.++ +++..++||+..|.+..|+| ...+|+|| |-|.|||+||+-
T Consensus 100 ~FHheyPWIlSASDDQTIrIWNwqsr-----~~iavltGHnHYVMcAqFhp-tEDlIVSa---SLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 100 FFHHEYPWILSASDDQTIRIWNWQSR-----KCIAVLTGHNHYVMCAQFHP-TEDLIVSA---SLDQTVRVWDISGLRKK 170 (1202)
T ss_pred eccCCCceEEEccCCCeEEEEeccCC-----ceEEEEecCceEEEeeccCC-ccceEEEe---cccceEEEEeecchhcc
Confidence 99999999999999999999999885 58899999999999999999 88999997 699999999971
Q ss_pred -CCCC-------------------Cce--EEEEeecCcEEEEeecccchhhhcc
Q 000080 2353 -APPT-------------------SSR--ASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2353 -~~tg-------------------~~v--~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.+++ .++ +.|+||+-+|+-.|++|-+--+||-
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 1222 343 5689999999999999977777763
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=185.34 Aligned_cols=167 Identities=13% Similarity=0.189 Sum_probs=143.3
Q ss_pred ccceeeccccccccccccc------cCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYV------DPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVP 2266 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~------d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p 2266 (2389)
+-.+|- ++|.+++.|++. ..+++.+ -||-|+.+.||.++||+|.|.||++|=+++++|...++ +
T Consensus 206 d~ilS~-srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR---~---- 275 (406)
T KOG0295|consen 206 DHILSC-SRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR---E---- 275 (406)
T ss_pred Ceeeec-ccccceeEEecccceeEEeccCchH--hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh---c----
Confidence 666777 889999999873 2222233 46999999999999999999999999999999988775 3
Q ss_pred CCCCCCCEEEEEECCC---------------CCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCC
Q 000080 2267 PPYALASISALQFDHY---------------GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSG 2331 (2389)
Q Consensus 2267 ~~GH~~~V~sVaFSPD---------------G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DG 2331 (2389)
|...|-+|+|-|. |+.++++|.|+|||+||+.+| .++.++.||..+|++++|+| .|
T Consensus 276 ---hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-----~cL~tL~ghdnwVr~~af~p-~G 346 (406)
T KOG0295|consen 276 ---HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-----MCLFTLVGHDNWVRGVAFSP-GG 346 (406)
T ss_pred ---cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-----eEEEEEecccceeeeeEEcC-CC
Confidence 5566888887652 369999999999999999997 58999999999999999999 99
Q ss_pred CEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2332 SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2332 slLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
++|+|. ++|+|+|+||+ .+.+|.+.+..|+.-|+++++++.-.+.++
T Consensus 347 kyi~Sc---aDDktlrvwdl--~~~~cmk~~~ah~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 347 KYILSC---ADDKTLRVWDL--KNLQCMKTLEAHEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred eEEEEE---ecCCcEEEEEe--ccceeeeccCCCcceeEEEecCCCCceEEe
Confidence 999996 69999999998 578999999999999999999987665544
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-16 Score=175.92 Aligned_cols=180 Identities=16% Similarity=0.193 Sum_probs=138.1
Q ss_pred ccccccccccceeeccccccccccccc----cCCCCcCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEec
Q 000080 2185 AFGIPGYAGIGASALGWETQDDFEDYV----DPPATVEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYG 2258 (2389)
Q Consensus 2185 ~~~~~g~~~~~Asg~~~d~~~~~~~~~----d~~atv~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~ 2258 (2389)
+..||-..+++|.+ +|... |+-+.. .|+++.+. --|.+|.|+-||++.+|||+||++||||++...|-+.|+
T Consensus 45 rLeiTpdk~~LAaa-~~qhv-RlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~ 122 (311)
T KOG0315|consen 45 RLEITPDKKDLAAA-GNQHV-RLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ 122 (311)
T ss_pred eEEEcCCcchhhhc-cCCee-EEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc
Confidence 45566677777777 66544 444442 35566442 235999999999999999999999999999877777774
Q ss_pred ccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCC----------------------------------
Q 000080 2259 VLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGG---------------------------------- 2304 (2389)
Q Consensus 2259 vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tgg---------------------------------- 2304 (2389)
|.+.|++|..+|+..-|.+|..+|.|++||+....
T Consensus 123 -----------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 123 -----------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred -----------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 23557777777777777777777777777765420
Q ss_pred ----------ccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCC-CceEEEEeecCcEEEEe
Q 000080 2305 ----------RSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEGLYDLFL 2373 (2389)
Q Consensus 2305 ----------rs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg-~~v~sL~GH~~~V~svA 2373 (2389)
.+.+.|+..++.|++++....||| |+++|||+ |.|+||+||++. +- +.-..++||+.+++..+
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~---ssdktv~iwn~~--~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATC---SSDKTVKIWNTD--DFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEee---cCCceEEEEecC--CceeeEEEeecCCceEEeee
Confidence 034567788899999999999999 99999997 589999999972 22 34578999999999999
Q ss_pred ecccchhhhc
Q 000080 2374 PLKLLNFALS 2383 (2389)
Q Consensus 2374 ~~~~~~~~~s 2383 (2389)
||-+|.+++.
T Consensus 266 FS~dg~YlvT 275 (311)
T KOG0315|consen 266 FSADGEYLVT 275 (311)
T ss_pred eccCccEEEe
Confidence 9999999875
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-16 Score=182.74 Aligned_cols=136 Identities=16% Similarity=0.239 Sum_probs=124.9
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
..||+|++.|..++++|||.|+||+|||+.+|++..|+ +||...|+.|+||+---++.|+++|+.||-||
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl----------tGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL----------TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee----------cchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 46799999999999999999999999999999998887 36889999999999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
++.. +.++.+-||-..|++++.+| .-.+|+|+ +.|.++||||+ .+...+..|.||++.|.+|...|
T Consensus 222 Le~n-----kvIR~YhGHlS~V~~L~lhP-Tldvl~t~---grDst~RvWDi--Rtr~~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 222 LEYN-----KVIRHYHGHLSGVYCLDLHP-TLDVLVTG---GRDSTIRVWDI--RTRASVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred chhh-----hhHHHhccccceeEEEeccc-cceeEEec---CCcceEEEeee--cccceEEEecCCCCcceeEEeec
Confidence 9974 67888999999999999999 77999997 48999999998 46777999999999999988764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=189.44 Aligned_cols=173 Identities=13% Similarity=0.124 Sum_probs=132.2
Q ss_pred cccceeeccccccccccccccC---------CCCcC--ceeEEEEEEcCCC-CeEEEEeCCCcEEEeecCCCceeeEecc
Q 000080 2192 AGIGASALGWETQDDFEDYVDP---------PATVE--NISTRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGV 2259 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~---------~atv~--ni~VrsVAFsPdG-~~LASGS~DgTIRLWDl~tGk~l~Tl~v 2259 (2389)
+..+|++ ++|.+.++|+..+. ..++. .-.|.+|+|||++ ++|+|||.|++|+|||+.+++.+.++.
T Consensus 88 ~~~LaSg-S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~- 165 (493)
T PTZ00421 88 PQKLFTA-SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK- 165 (493)
T ss_pred CCEEEEE-eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-
Confidence 3468888 88999999987432 11221 2367999999986 699999999999999999999887773
Q ss_pred cCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCe-eEEEEecCCCCEEEEee
Q 000080 2260 LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA-MDVSYITSSGSVIAAAG 2338 (2389)
Q Consensus 2260 l~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V-~sVAFSP~DGslLASAG 2338 (2389)
+|.+.|++|+|+|||+.||+|+.|++|++||++++ +.+.++.+|.+.+ ..+.|.+ ++..|+++|
T Consensus 166 ---------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-----~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G 230 (493)
T PTZ00421 166 ---------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-----TIVSSVEAHASAKSQRCLWAK-RKDLIITLG 230 (493)
T ss_pred ---------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-----cEEEEEecCCCCcceEEEEcC-CCCeEEEEe
Confidence 46688999999999999999999999999999986 4567788898654 4678888 667777776
Q ss_pred cC-CCCCeEEEeeCCCCCCCceEEEEeec-CcEEEEeecccchhhh
Q 000080 2339 HS-SNGINVVVWDTLAPPTSSRASITCHE-GLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2339 ~s-S~D~TVrLWD~l~~tg~~v~sL~GH~-~~V~svA~~~~~~~~~ 2382 (2389)
++ +.|++|+|||+.. ....+.....|. ..+....++++++..+
T Consensus 231 ~s~s~Dr~VklWDlr~-~~~p~~~~~~d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRK-MASPYSTVDLDQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred cCCCCCCeEEEEeCCC-CCCceeEeccCCCCceEEEEEcCCCCEEE
Confidence 53 4689999999842 223455554443 4455667788887654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=192.46 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=114.7
Q ss_pred eEEEEEEcCC-CCeEEEEeCCCcEEEeecCCCce-eeEecccCCCCCCCCCCCCCEEEEEECCCCCE-EEEEeCCCcEEE
Q 000080 2221 STRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDGTVCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk~-l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~-LASgS~DgTVkL 2297 (2389)
.|.+|+|||+ +.+|||||.|++|+|||+.++.. +.++.. +-. ...||...|.+|+|+|+|.. ||||+.|++|+|
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~-p~~--~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD-PQC--ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc-ceE--EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 4699999997 78999999999999999976532 111100 000 01357789999999999975 689999999999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEE-----E
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDL-----F 2372 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~s-----v 2372 (2389)
||++++. ....+. |...|.+++|+| +|++||++ +.|++|+|||+ .+++.++++.+|.+.+.+ .
T Consensus 153 WDl~tg~-----~~~~i~-~~~~V~Slswsp-dG~lLat~---s~D~~IrIwD~--Rsg~~i~tl~gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 153 WDIENEK-----RAFQIN-MPKKLSSLKWNI-KGNLLSGT---CVGKHMHIIDP--RKQEIASSFHIHDGGKNTKNIWID 220 (568)
T ss_pred EECCCCc-----EEEEEe-cCCcEEEEEECC-CCCEEEEE---ecCCEEEEEEC--CCCcEEEEEecccCCceeEEEEee
Confidence 9999862 344444 667899999999 99999986 48999999998 467778999999987543 2
Q ss_pred eecccchhhhcc
Q 000080 2373 LPLKLLNFALSK 2384 (2389)
Q Consensus 2373 A~~~~~~~~~s~ 2384 (2389)
.++++++++++-
T Consensus 221 ~fs~d~~~IlTt 232 (568)
T PTZ00420 221 GLGGDDNYILST 232 (568)
T ss_pred eEcCCCCEEEEE
Confidence 345788887763
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-16 Score=177.25 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=123.0
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCCcEEEe
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~DgTVkLW 2298 (2389)
.++.++.|-+|+ .|+|||.|+|.-|||+++|+.+..|. ||.+.|.++.++| ++++|+||+.|++.+||
T Consensus 146 gylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~----------GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 146 GYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH----------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred ceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec----------CCcccEEEEecCCCCCCeEEecccccceeee
Confidence 355888998855 57789999999999999999999883 6889999999999 99999999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE--eecCcEEEEeecc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CHEGLYDLFLPLK 2376 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~--GH~~~V~svA~~~ 2376 (2389)
|++.+ .+.+++.||+..|++|+|.| +|.-+||| |+|+|.|++|+. ..+.+..++ .--.+|++|++|+
T Consensus 215 D~R~~-----~c~qtF~ghesDINsv~ffP-~G~afatG---SDD~tcRlyDlR--aD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 215 DVRSG-----QCVQTFEGHESDINSVRFFP-SGDAFATG---SDDATCRLYDLR--ADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eccCc-----ceeEeecccccccceEEEcc-CCCeeeec---CCCceeEEEeec--CCcEEeeeccCcccCCceeEEEcc
Confidence 99987 47899999999999999999 99999995 799999999985 344555555 2336788999999
Q ss_pred cchhhhc
Q 000080 2377 LLNFALS 2383 (2389)
Q Consensus 2377 ~~~~~~s 2383 (2389)
+||..+.
T Consensus 284 SGRlLfa 290 (343)
T KOG0286|consen 284 SGRLLFA 290 (343)
T ss_pred cccEEEe
Confidence 9986553
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-16 Score=193.94 Aligned_cols=180 Identities=18% Similarity=0.148 Sum_probs=144.1
Q ss_pred ccceeeccccccccccccccC------CCC--cCceeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP------PAT--VENISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAA 2263 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~------~at--v~ni~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh 2263 (2389)
+.+|+| +-|...++|.+.+. .+. -++..|-+|+++-.|. +|+|+|.|+|||+|++...+.......+..-
T Consensus 378 ~llat~-sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 378 DLLATG-SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred cEEEEe-cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhh
Confidence 578888 89999999977321 111 1224668899987766 8999999999999999763321110000000
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2264 NVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
.....|...|++|+++|+.+.|||||.|+|.|||+++.. ....++.||...|++|.|+| ..+++||+ |.|
T Consensus 457 -~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~vLsGH~RGvw~V~Fs~-~dq~laT~---SgD 526 (775)
T KOG0319|consen 457 -YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLGVLSGHTRGVWCVSFSK-NDQLLATC---SGD 526 (775)
T ss_pred -HHHHhhcccccceEecCCCceEEecccccceeeecccCc-----eEEEEeeCCccceEEEEecc-ccceeEec---cCC
Confidence 001247789999999999999999999999999999964 46789999999999999999 66999996 799
Q ss_pred CeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2344 INVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+|||||.+ .+..|+++|+||+..|--++|-..|...+|-|
T Consensus 527 ~TvKIW~i--s~fSClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 527 KTVKIWSI--STFSCLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred ceEEEEEe--ccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence 99999998 68899999999999999999999999998876
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-16 Score=188.69 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=126.0
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.||++.|+++|.+++||..||.||.|+..- .-++.++ +| |...|++++|||+...|+|+|+||+|+|||.
T Consensus 140 ~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~---ah------h~eaIRdlafSpnDskF~t~SdDg~ikiWdf 209 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQ---AH------HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF 209 (464)
T ss_pred cceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhh---Hh------hhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence 579999999999999999999999999753 3333332 23 5588999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
... ++-..+.||...|.+|+|+| .-.+|||+ |.|++||+||+ .++.|+.+|.+|.+-|..+-+++.|||
T Consensus 210 ~~~-----kee~vL~GHgwdVksvdWHP-~kgLiasg---skDnlVKlWDp--rSg~cl~tlh~HKntVl~~~f~~n~N~ 278 (464)
T KOG0284|consen 210 RMP-----KEERVLRGHGWDVKSVDWHP-TKGLIASG---SKDNLVKLWDP--RSGSCLATLHGHKNTVLAVKFNPNGNW 278 (464)
T ss_pred cCC-----chhheeccCCCCcceeccCC-ccceeEEc---cCCceeEeecC--CCcchhhhhhhccceEEEEEEcCCCCe
Confidence 865 45567799999999999999 88899997 59999999998 588999999999999999999999999
Q ss_pred hhcc
Q 000080 2381 ALSK 2384 (2389)
Q Consensus 2381 ~~s~ 2384 (2389)
.|+-
T Consensus 279 Llt~ 282 (464)
T KOG0284|consen 279 LLTG 282 (464)
T ss_pred eEEc
Confidence 8874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=171.64 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=138.7
Q ss_pred ccceeeccccccccccccccCCCCcCc---eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEec-----------
Q 000080 2193 GIGASALGWETQDDFEDYVDPPATVEN---ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYG----------- 2258 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~atv~n---i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~----------- 2258 (2389)
....+| +-|.+.|+|+...+....+. -+|.+|..||+...|++|-++|.||+||+++..|...+.
T Consensus 96 rWMyTg-seDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~ 174 (311)
T KOG0315|consen 96 RWMYTG-SEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT 174 (311)
T ss_pred eEEEec-CCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE
Confidence 456677 88889999998765554332 467899999999999999999999999999775543321
Q ss_pred ccCCCCC-------------------------C---CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCccc
Q 000080 2259 VLPAANV-------------------------P---PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2389)
Q Consensus 2259 vl~gh~~-------------------------p---~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~ 2310 (2389)
+-++..| | ...|...+....||||++.||++|.|.||++|++++. .+.
T Consensus 175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~----~kl 250 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF----FKL 250 (311)
T ss_pred EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc----eee
Confidence 1111110 0 4568888999999999999999999999999999864 244
Q ss_pred ceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2311 l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
-..++||+.++++.+||. ||++|+|| |.|+++||||+ +.++.++..+||.....|++.
T Consensus 251 e~~l~gh~rWvWdc~FS~-dg~YlvTa---ssd~~~rlW~~--~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 251 ELVLTGHQRWVWDCAFSA-DGEYLVTA---SSDHTARLWDL--SAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EEEeecCCceEEeeeecc-CccEEEec---CCCCceeeccc--ccCceeeecCCcccccEEEEe
Confidence 567899999999999999 99999997 58899999998 678889999999999998875
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=178.56 Aligned_cols=172 Identities=14% Similarity=0.195 Sum_probs=146.6
Q ss_pred cccceeeccccccccccccc--cCCCCcCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYV--DPPATVEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~--d~~atv~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
.--.|+| +-|.+.++|+.. ....|+.+ -.||.|+||+-.+|+.|++.|+.||.||+...+-++.|.
T Consensus 163 n~wf~tg-s~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh--------- 232 (460)
T KOG0285|consen 163 NEWFATG-SADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH--------- 232 (460)
T ss_pred ceeEEec-CCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc---------
Confidence 4446777 778888888874 33344443 256999999999999999999999999999998888772
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
||.+.|++++..|.-+.|++|+.|.|+|+||+++. ..+..+.||...|.+|.+.|-|++++ |+ |.|.|||
T Consensus 233 -GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-----~~V~~l~GH~~~V~~V~~~~~dpqvi-t~---S~D~tvr 302 (460)
T KOG0285|consen 233 -GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-----ASVHVLSGHTNPVASVMCQPTDPQVI-TG---SHDSTVR 302 (460)
T ss_pred -cccceeEEEeccccceeEEecCCcceEEEeeeccc-----ceEEEecCCCCcceeEEeecCCCceE-Ee---cCCceEE
Confidence 78899999999999999999999999999999985 46888999999999999998666655 64 7999999
Q ss_pred EeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2348 VWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2348 LWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|||+ ..++...++..|..-|++++.+|+.+---|.|
T Consensus 303 lWDl--~agkt~~tlt~hkksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 303 LWDL--RAGKTMITLTHHKKSVRALCLHPKENLFASAS 338 (460)
T ss_pred Eeee--ccCceeEeeecccceeeEEecCCchhhhhccC
Confidence 9998 46888999999999999999999987666655
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=186.91 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=131.1
Q ss_pred cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 000080 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2389)
Q Consensus 2217 v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVk 2296 (2389)
+.+++||+..|=+--+++++||+|+.||+++..+++.+.+|. .|.+.|++|+-.|.--.+.|+|+|-+||
T Consensus 53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe----------AH~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE----------AHSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEee----------ccccceeeeeecCCCCeEEecCCccEEE
Confidence 335688999999999999999999999999999999999984 3679999999999999999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
+||-+.+ -.+.++++||+..|.+|+|+|.|-+..||+ |-|+|||+|.+ .+..+..+|+||+.+|+||.+-+
T Consensus 123 lW~we~~----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~---sLDrTVKVWsl--gs~~~nfTl~gHekGVN~Vdyy~ 193 (794)
T KOG0276|consen 123 LWDWENE----WACEQTFEGHEHYVMQVAFNPKDPNTFASA---SLDRTVKVWSL--GSPHPNFTLEGHEKGVNCVDYYT 193 (794)
T ss_pred EeeccCc----eeeeeEEcCcceEEEEEEecCCCccceeee---eccccEEEEEc--CCCCCceeeeccccCcceEEecc
Confidence 9999864 257789999999999999999999999997 69999999998 45567899999999999999999
Q ss_pred cch
Q 000080 2377 LLN 2379 (2389)
Q Consensus 2377 ~~~ 2379 (2389)
-|+
T Consensus 194 ~gd 196 (794)
T KOG0276|consen 194 GGD 196 (794)
T ss_pred CCC
Confidence 885
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-16 Score=185.13 Aligned_cols=178 Identities=14% Similarity=0.174 Sum_probs=146.5
Q ss_pred cccCccccccccccccceeeccccccccccccccCCC--Cc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCcee
Q 000080 2179 DLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPA--TV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT 2254 (2389)
Q Consensus 2179 ~~~~~~~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~a--tv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l 2254 (2389)
+..+..||+- -|.--++- +.|.+.++|+|..+.. .+ ++--|++++|||...+|||||.|..|||||.++|+|+
T Consensus 181 eaIRdlafSp--nDskF~t~-SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 181 EAIRDLAFSP--NDSKFLTC-SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhheeccCC--CCceeEEe-cCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 3445667754 33334444 7789999999973322 22 2345799999999999999999999999999999999
Q ss_pred eEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEE
Q 000080 2255 ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVI 2334 (2389)
Q Consensus 2255 ~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslL 2334 (2389)
.|+. +|.+.|.+|.|+|+|++|+|+|.|.++|+.|+++- +.++++++|.+.|++++++|-.-.++
T Consensus 258 ~tlh----------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-----kEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 258 ATLH----------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-----KELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred hhhh----------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-----HHHHHhhcchhhheeeccccccccce
Confidence 9983 58899999999999999999999999999999964 57899999999999999999877888
Q ss_pred EEeecCCCCCeEEEeeCCCCCCCceE-EEEeecCcEEEEeecccch
Q 000080 2335 AAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2335 ASAG~sS~D~TVrLWD~l~~tg~~v~-sL~GH~~~V~svA~~~~~~ 2379 (2389)
+||| .|+.|..|.+. ..+.+. .-.+|.+.|++++.+|.|-
T Consensus 323 tsgg---~Dgsvvh~~v~--~~~p~~~i~~AHd~~iwsl~~hPlGh 363 (464)
T KOG0284|consen 323 TSGG---SDGSVVHWVVG--LEEPLGEIPPAHDGEIWSLAYHPLGH 363 (464)
T ss_pred eecc---CCCceEEEecc--ccccccCCCcccccceeeeeccccce
Confidence 8865 89999999983 233343 3377999999999999985
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=176.35 Aligned_cols=212 Identities=17% Similarity=0.312 Sum_probs=144.5
Q ss_pred CCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE
Q 000080 35 TAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA 114 (2389)
Q Consensus 35 ~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA 114 (2389)
.+|+-++=-+.++++ | ..+|-|+...-.|.|.-.++.-++.. -.++||.. +|..++|||| ..+++|
T Consensus 221 ~~htdEVWfl~FS~n--G-kyLAsaSkD~Taiiw~v~~d~~~kl~------~tlvgh~~--~V~yi~wSPD---dryLla 286 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHN--G-KYLASASKDSTAIIWIVVYDVHFKLK------KTLVGHSQ--PVSYIMWSPD---DRYLLA 286 (519)
T ss_pred hhCCCcEEEEEEcCC--C-eeEeeccCCceEEEEEEecCcceeee------eeeecccC--ceEEEEECCC---CCeEEe
Confidence 467888888888988 8 58999999999999955555555544 66778866 9999999999 677776
Q ss_pred e-cCCeEEEEeeCCCCCCCCccceeeEEec--ccceEEEEeecCCCCeEEEEecc--eEEeeccC---CcEEEEEEeecc
Q 000080 115 A-SENCIFVFAHDSASSKGSFCWSQNAILV--QGTKVEAIEWTGSGDGIVAGGME--TVLWKKKN---TLWEIAWKFKEN 186 (2389)
Q Consensus 115 S-yDntIRVw~~d~~~~kgd~~W~~~~tL~--hssTV~sIAWSpdG~rLaSggdD--V~IW~~~~---s~Wecvwt~~~~ 186 (2389)
+ .|..+++|.-+. |+. .-... +..+|-+.+|-|||.++++||.| +.+|+... +.|+-+
T Consensus 287 Cg~~e~~~lwDv~t----gd~----~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv------ 352 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDT----GDL----RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV------ 352 (519)
T ss_pred cCchHheeeccCCc----chh----hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc------
Confidence 5 688999998772 221 11111 35789999999999999999998 88998532 445532
Q ss_pred ccceEEEEeecCCCc-eEeeecccc---cccCC-----------------------------------------------
Q 000080 187 YPQNLVSATWSIEGP-SATAASMSQ---LDLLG----------------------------------------------- 215 (2389)
Q Consensus 187 ~~~~ivsvaWSpdG~-fATag~dik---f~~~~----------------------------------------------- 215 (2389)
..+.+++++=++||+ +.+.+.|.+ |.++.
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 334455555566666 333333222 11110
Q ss_pred ------------------------CCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccCceEE
Q 000080 216 ------------------------PKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLL 271 (2389)
Q Consensus 216 ------------------------~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILA 271 (2389)
+...+.-|+||-.-.+. ...+..+|+..||||+|+|. ...++|
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll~~LsGHs~~vNcVswNP~------------~p~m~A 499 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-LLAVLSGHSKTVNCVSWNPA------------DPEMFA 499 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc-eeEeecCCcceeeEEecCCC------------CHHHhh
Confidence 01111225555322222 22345899999999999995 455699
Q ss_pred eeecCCeEEEEEeecC
Q 000080 272 TCCLDGTVRLWCEMDS 287 (2389)
Q Consensus 272 ScSdDgTVRLW~e~d~ 287 (2389)
|+|||||||||...++
T Consensus 500 SasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 500 SASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCCCeEEEecCCcc
Confidence 9999999999986543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-15 Score=194.19 Aligned_cols=172 Identities=16% Similarity=0.205 Sum_probs=138.6
Q ss_pred ccceeeccccccccccccccC--CCCc--CceeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP--PATV--ENISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
..+|++ ++|.+.++|+.... ..++ +.-.|++++|+| ++.+|+|||.|++|++||+.+++++.++. .
T Consensus 546 ~~las~-~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~----- 616 (793)
T PLN00181 546 SQVASS-NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---T----- 616 (793)
T ss_pred CEEEEE-eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---c-----
Confidence 356677 77888888876421 1111 123579999997 78999999999999999999999888874 1
Q ss_pred CCCCCCEEEEEEC-CCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeE
Q 000080 2268 PYALASISALQFD-HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2389)
Q Consensus 2268 ~GH~~~V~sVaFS-PDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TV 2346 (2389)
| ..|.+++|+ ++|+.||+|+.||+|++||++++. .++.++.+|...|.+++|. +|+.|+|+ +.|++|
T Consensus 617 --~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~~~~~h~~~V~~v~f~--~~~~lvs~---s~D~~i 684 (793)
T PLN00181 617 --K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLCTMIGHSKTVSYVRFV--DSSTLVSS---STDNTL 684 (793)
T ss_pred --C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccceEecCCCCCEEEEEEe--CCCEEEEE---ECCCEE
Confidence 2 569999995 679999999999999999998752 3667888999999999997 46889887 489999
Q ss_pred EEeeCCCC----CCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2347 VVWDTLAP----PTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2347 rLWD~l~~----tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+|||+... ..+.++++.+|.+.+.+++++++|+++.+-.
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 99998422 2356889999999999999999999887643
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=177.26 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=126.4
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC---------EEEEEe
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH---------RFASAA 2290 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~---------~LASgS 2290 (2389)
.+|.++.|+|.|.+|+|+|+|+|+|||..+++.+...|+ +|+..|+.+.+||+|. .+|+++
T Consensus 360 g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~----------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas 429 (524)
T KOG0273|consen 360 GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ----------AHSKEIYTIKWSPTGPVTSNPNMNLMLASAS 429 (524)
T ss_pred CceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh----------hhccceeeEeecCCCCccCCCcCCceEEEee
Confidence 477999999999999999999999999999998888875 4778999999999874 899999
Q ss_pred CCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEE
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYD 2370 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~ 2370 (2389)
.|+||++||+..| .|+.++..|+.+|++|+|+| +|++||+| +.|+-|.||++ ++++.+++.+ -.+.|.
T Consensus 430 ~dstV~lwdv~~g-----v~i~~f~kH~~pVysvafS~-~g~ylAsG---s~dg~V~iws~--~~~~l~~s~~-~~~~If 497 (524)
T KOG0273|consen 430 FDSTVKLWDVESG-----VPIHTLMKHQEPVYSVAFSP-NGRYLASG---SLDGCVHIWST--KTGKLVKSYQ-GTGGIF 497 (524)
T ss_pred cCCeEEEEEccCC-----ceeEeeccCCCceEEEEecC-CCcEEEec---CCCCeeEeccc--cchheeEeec-CCCeEE
Confidence 9999999999987 68899999999999999999 99999995 79999999998 6788888888 456789
Q ss_pred EEeecccchhh
Q 000080 2371 LFLPLKLLNFA 2381 (2389)
Q Consensus 2371 svA~~~~~~~~ 2381 (2389)
.|..+..|+-+
T Consensus 498 el~Wn~~G~kl 508 (524)
T KOG0273|consen 498 ELCWNAAGDKL 508 (524)
T ss_pred EEEEcCCCCEE
Confidence 99999998753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=190.30 Aligned_cols=171 Identities=12% Similarity=0.117 Sum_probs=135.7
Q ss_pred ccccceeeccccccccccccccCCC----------CcC-ceeEEEEEEcCC-CCeEEEEeCCCcEEEeecCCCceeeEec
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPPA----------TVE-NISTRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYG 2258 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~a----------tv~-ni~VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk~l~Tl~ 2258 (2389)
.+.+.|+| +.|...++|++..... .+. .-.|.+++|+|. +.+||||+.||+|+|||+.+++.+.++.
T Consensus 494 dg~~latg-g~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~ 572 (793)
T PLN00181 494 DGEFFATA-GVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK 572 (793)
T ss_pred CCCEEEEE-eCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 34578888 8888999997632110 011 124688999885 7899999999999999999998888773
Q ss_pred ccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEe
Q 000080 2259 VLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAA 2337 (2389)
Q Consensus 2259 vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASA 2337 (2389)
+|.+.|++|+|+| +|+.||||+.||+|++||++++ ..+.++..| ..|.+++|++++|.+||+|
T Consensus 573 ----------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-----~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 573 ----------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-----VSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred ----------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-----cEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 4678999999997 7999999999999999999986 345566544 5789999987689999996
Q ss_pred ecCCCCCeEEEeeCCCCCCC-ceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2338 GHSSNGINVVVWDTLAPPTS-SRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2338 G~sS~D~TVrLWD~l~~tg~-~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+.|++|++||+. +.+ .+..+.+|...|+++++. +++..++-
T Consensus 637 ---s~dg~I~iwD~~--~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~ 678 (793)
T PLN00181 637 ---SADHKVYYYDLR--NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS 678 (793)
T ss_pred ---eCCCeEEEEECC--CCCccceEecCCCCCEEEEEEe-CCCEEEEE
Confidence 589999999984 333 478889999999999997 56665553
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-14 Score=153.90 Aligned_cols=144 Identities=17% Similarity=0.270 Sum_probs=125.0
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
+|.+++|+|++++|++|+.|++|++||+.+++....+. +|...+..+.|+|+|+.|++++.||+|++||+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK----------GHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe----------cCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 46999999999999999999999999998887666653 35577899999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+++ +....+.+|...+.+++|+| ++++++++ +.|+.|++||+ .+++.+..+.+|.+.+.++++++++++
T Consensus 81 ~~~-----~~~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 81 ETG-----ECVRTLTGHTSYVSSVAFSP-DGRILSSS---SRDKTIKVWDV--ETGKCLTTLRGHTDWVNSVAFSPDGTF 149 (289)
T ss_pred Ccc-----cceEEEeccCCcEEEEEEcC-CCCEEEEe---cCCCeEEEEEC--CCcEEEEEeccCCCcEEEEEEcCcCCE
Confidence 975 35667788999999999999 78888875 36999999998 356778889999999999999999888
Q ss_pred hhccc
Q 000080 2381 ALSKC 2385 (2389)
Q Consensus 2381 ~~s~~ 2385 (2389)
++.-+
T Consensus 150 l~~~~ 154 (289)
T cd00200 150 VASSS 154 (289)
T ss_pred EEEEc
Confidence 77644
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-15 Score=166.12 Aligned_cols=113 Identities=20% Similarity=0.269 Sum_probs=105.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|+++.|+-||++.++++.|.|||||+.-.|.+++||. ||...|..++.+.|...||||+.|+.|.+||+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------GHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec----------CCCceeeeccccccccccccCCCCceEEEEEc
Confidence 57999999999999999999999999999999999994 56688999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
+|| +..+.+.||.+.|+.|+|+- +.+.++|| |.|.+||+||-.
T Consensus 89 ~TG-----kv~Rr~rgH~aqVNtV~fNe-esSVv~Sg---sfD~s~r~wDCR 131 (307)
T KOG0316|consen 89 NTG-----KVDRRFRGHLAQVNTVRFNE-ESSVVASG---SFDSSVRLWDCR 131 (307)
T ss_pred ccC-----eeeeecccccceeeEEEecC-cceEEEec---cccceeEEEEcc
Confidence 998 57888999999999999998 88999986 689999999974
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-15 Score=176.04 Aligned_cols=164 Identities=17% Similarity=0.196 Sum_probs=135.0
Q ss_pred cceeeccccccccccccc------cCCCC-cC-----ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccC
Q 000080 2194 IGASALGWETQDDFEDYV------DPPAT-VE-----NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLP 2261 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~------d~~at-v~-----ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~ 2261 (2389)
-+++| +-|.-.++|.|. |.... -+ .-.|.+++|+.|...||||+.||.|++|-+.+|+|++.|. .
T Consensus 227 yLvsg-SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--r 303 (508)
T KOG0275|consen 227 YLVSG-SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--R 303 (508)
T ss_pred eEeec-cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--h
Confidence 35556 556667777774 11111 11 1378999999999999999999999999999999999885 2
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC
Q 000080 2262 AANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS 2341 (2389)
Q Consensus 2262 gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS 2341 (2389)
.|+..|+++.||.|+..+.|+|.|.|||+--+.+| +++..+.||+..|+.+.|.+ ||..|.|+ |
T Consensus 304 -------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-----K~LKEfrGHsSyvn~a~ft~-dG~~iisa---S 367 (508)
T KOG0275|consen 304 -------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-----KCLKEFRGHSSYVNEATFTD-DGHHIISA---S 367 (508)
T ss_pred -------hhccCeeEEEEccCcchhhcccccceEEEeccccc-----hhHHHhcCccccccceEEcC-CCCeEEEe---c
Confidence 36788999999999999999999999999999987 57888899999999999999 99999997 6
Q ss_pred CCCeEEEeeCCCCCCCceEEEE--eecCcEEEEeecccc
Q 000080 2342 NGINVVVWDTLAPPTSSRASIT--CHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~~v~sL~--GH~~~V~svA~~~~~ 2378 (2389)
.|+|||+|+. .+++|+.++. +-+-.|.+|-+.|+.
T Consensus 368 sDgtvkvW~~--KtteC~~Tfk~~~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 368 SDGTVKVWHG--KTTECLSTFKPLGTDYPVNSVILLPKN 404 (508)
T ss_pred CCccEEEecC--cchhhhhhccCCCCcccceeEEEcCCC
Confidence 8999999997 5778887774 345566777777664
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=168.13 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=141.5
Q ss_pred ccccceeecccccccccccc-ccCCC--C--cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2191 YAGIGASALGWETQDDFEDY-VDPPA--T--VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~-~d~~a--t--v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
.+...|+| |+|-.+-+|.. -|-+. . .+...|..+.|.+|+..|+|+|.|++|+.||.++|++++.++
T Consensus 58 ~gs~~aSg-G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k------- 129 (338)
T KOG0265|consen 58 DGSCFASG-GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK------- 129 (338)
T ss_pred CCCeEeec-CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc-------
Confidence 66778888 88888888874 22221 1 233577999999999999999999999999999999998775
Q ss_pred CCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC
Q 000080 2266 PPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI 2344 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~ 2344 (2389)
+|...|.++.-+--| .++.||+.|||+||||+++.+ ++++++ -...+.+|+|.. ++..+.||| -|+
T Consensus 130 ---~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-----~~~t~~-~kyqltAv~f~d-~s~qv~sgg---Idn 196 (338)
T KOG0265|consen 130 ---GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-----AIKTFE-NKYQLTAVGFKD-TSDQVISGG---IDN 196 (338)
T ss_pred ---cccceeeecCccccCCeEEEecCCCceEEEEeecccc-----hhhccc-cceeEEEEEecc-cccceeecc---ccC
Confidence 577999999955556 688999999999999999752 444443 246788999998 778888886 899
Q ss_pred eEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2345 NVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2345 TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.||+||+. .+.+++.+.||.+.|+.++.++.|.+.||.
T Consensus 197 ~ikvWd~r--~~d~~~~lsGh~DtIt~lsls~~gs~llsn 234 (338)
T KOG0265|consen 197 DIKVWDLR--KNDGLYTLSGHADTITGLSLSRYGSFLLSN 234 (338)
T ss_pred ceeeeccc--cCcceEEeecccCceeeEEeccCCCccccc
Confidence 99999984 567899999999999999999999999985
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-14 Score=151.09 Aligned_cols=168 Identities=19% Similarity=0.246 Sum_probs=133.4
Q ss_pred cceeeccccccccccccccC--CCC--cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCC
Q 000080 2194 IGASALGWETQDDFEDYVDP--PAT--VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPY 2269 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~--~at--v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~G 2269 (2389)
..+.+ +.+....+|++... ... .+...+..+.|+|++++|++++.|++|++||+.+++.+..+. +
T Consensus 23 ~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~----------~ 91 (289)
T cd00200 23 LLATG-SGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT----------G 91 (289)
T ss_pred EEEEe-ecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe----------c
Confidence 34444 44555555554321 011 122345789999999999999999999999999887777763 3
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEe
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLW 2349 (2389)
|...|.+++|+|+++.+++++.||.|++||++++ ++...+.+|...+.+++|+| ++.+|+++ +.|++|++|
T Consensus 92 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~---~~~~~i~i~ 162 (289)
T cd00200 92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-----KCLTTLRGHTDWVNSVAFSP-DGTFVASS---SQDGTIKLW 162 (289)
T ss_pred cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-----EEEEEeccCCCcEEEEEEcC-cCCEEEEE---cCCCcEEEE
Confidence 5578999999999999999999999999999975 45667778999999999999 78999875 469999999
Q ss_pred eCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2350 DTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2350 D~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
|+ .+++.++.+..|...+.+++.+|+++..+.
T Consensus 163 d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 194 (289)
T cd00200 163 DL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLS 194 (289)
T ss_pred Ec--cccccceeEecCccccceEEECCCcCEEEE
Confidence 98 456778899999999999999999966543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.2e-14 Score=177.91 Aligned_cols=153 Identities=12% Similarity=0.159 Sum_probs=115.9
Q ss_pred ccccceeeccccccccccccccC---C-------CCc--CceeEEEEEEcCCCCe-EEEEeCCCcEEEeecCCCceeeEe
Q 000080 2191 YAGIGASALGWETQDDFEDYVDP---P-------ATV--ENISTRAFSSHPLRPF-FLVGSSNTHIYLWEFGKDKATATY 2257 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~---~-------atv--~ni~VrsVAFsPdG~~-LASGS~DgTIRLWDl~tGk~l~Tl 2257 (2389)
...++|+| +.|.+.++|+.... . .++ +.-.|.+|+|||++.. |||||.|++|+|||+++++.+.++
T Consensus 86 ~~~lLASg-S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i 164 (568)
T PTZ00420 86 FSEILASG-SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI 164 (568)
T ss_pred CCCEEEEE-eCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 34578888 88889999987421 0 111 1235799999999985 579999999999999999877665
Q ss_pred cccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEE-----EEecCCCC
Q 000080 2258 GVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV-----SYITSSGS 2332 (2389)
Q Consensus 2258 ~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sV-----AFSP~DGs 2332 (2389)
. |...|.+++|+|||+.||+++.|++|+|||++++ +.+.++.+|.+.+... .|++ ++.
T Consensus 165 ~-----------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-----~~i~tl~gH~g~~~s~~v~~~~fs~-d~~ 227 (568)
T PTZ00420 165 N-----------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-----EIASSFHIHDGGKNTKNIWIDGLGG-DDN 227 (568)
T ss_pred e-----------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-----cEEEEEecccCCceeEEEEeeeEcC-CCC
Confidence 2 2356999999999999999999999999999986 3567888998865443 3457 888
Q ss_pred EEEEeecCC-CCCeEEEeeCCCCCCCceEEE
Q 000080 2333 VIAAAGHSS-NGINVVVWDTLAPPTSSRASI 2362 (2389)
Q Consensus 2333 lLASAG~sS-~D~TVrLWD~l~~tg~~v~sL 2362 (2389)
+|+|+|++. .+++|+|||+. ..++.++.+
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr-~~~~pl~~~ 257 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLK-NTTSALVTM 257 (568)
T ss_pred EEEEEEcCCCCccEEEEEECC-CCCCceEEE
Confidence 999887432 23689999984 234555544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-15 Score=186.57 Aligned_cols=166 Identities=19% Similarity=0.292 Sum_probs=141.7
Q ss_pred ceeeccccccccccccccCCCCc----CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC
Q 000080 2195 GASALGWETQDDFEDYVDPPATV----ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA 2270 (2389)
Q Consensus 2195 ~Asg~~~d~~~~~~~~~d~~atv----~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH 2270 (2389)
++.| ||++-.-+|...++.+.. +.-+|.+|.|+++..+|++|+.||+||+||+..++.++|+. ||
T Consensus 43 ~~~G-g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt----------gh 111 (825)
T KOG0267|consen 43 LVTG-GEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT----------GH 111 (825)
T ss_pred eccC-CCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh----------cc
Confidence 4456 888888888877554432 22468999999999999999999999999999999999884 67
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEee
Q 000080 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2271 ~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD 2350 (2389)
...+.+|+|+|-|.++|+||.|+-+++||++..| +..++.+|...|+.++|+| +|+++|++| +|.+|+|||
T Consensus 112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~---ed~tvki~d 182 (825)
T KOG0267|consen 112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHTRVVDVLRLSP-DGRWVASGG---EDNTVKIWD 182 (825)
T ss_pred ccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCcceeEEEeecC-CCceeeccC---Ccceeeeec
Confidence 7889999999999999999999999999999643 5677788999999999999 999999975 899999999
Q ss_pred CCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2351 TLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2351 ~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
. +.|+....|.+|++.+.++-++|. +++|+
T Consensus 183 ~--~agk~~~ef~~~e~~v~sle~hp~-e~Lla 212 (825)
T KOG0267|consen 183 L--TAGKLSKEFKSHEGKVQSLEFHPL-EVLLA 212 (825)
T ss_pred c--cccccccccccccccccccccCch-hhhhc
Confidence 7 567778999999999999998874 44443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=180.88 Aligned_cols=144 Identities=18% Similarity=0.328 Sum_probs=118.0
Q ss_pred EEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEeeC
Q 000080 2223 RAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2223 rsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLWDl 2300 (2389)
..+.||+.-+ +|+|||+||+||+||++..+.+.|++ +.+..|+.|+|+|- |+.||++.+.|.+++||+
T Consensus 137 ~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~----------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDl 206 (839)
T KOG0269|consen 137 NKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR----------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDL 206 (839)
T ss_pred eeeeeccCCccEEEecCCCceEEEEeeeccccccccc----------ccchhhhceeeccCCCceEEEecCCceEEEeec
Confidence 6779999876 79999999999999999999988886 35688999999986 799999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+... ++...+.+|.+.|.++.|+| ++.+||||| .|++|||||+..+-.+...+++ -...|.+|..-|.-..
T Consensus 207 Rqp~----r~~~k~~AH~GpV~c~nwhP-nr~~lATGG---RDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 207 RQPD----RCEKKLTAHNGPVLCLNWHP-NREWLATGG---RDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred cCch----hHHHHhhcccCceEEEeecC-CCceeeecC---CCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccc
Confidence 9864 68889999999999999999 999999975 9999999998422223344443 3345667777666555
Q ss_pred hhccc
Q 000080 2381 ALSKC 2385 (2389)
Q Consensus 2381 ~~s~~ 2385 (2389)
-|--|
T Consensus 278 hLAtc 282 (839)
T KOG0269|consen 278 HLATC 282 (839)
T ss_pred hhhhh
Confidence 44444
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=177.55 Aligned_cols=164 Identities=18% Similarity=0.246 Sum_probs=136.7
Q ss_pred cccccceeeccccccccccccccCCCCcC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2190 GYAGIGASALGWETQDDFEDYVDPPATVE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2190 g~~~~~Asg~~~d~~~~~~~~~d~~atv~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
|.++.+.|| +||.+.++|...+....+. .-+|++|++=|++ .++|||.|.+||+|.= |++++||.
T Consensus 110 ~~~~~~iSg-SWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~--------- 176 (745)
T KOG0301|consen 110 GEDGTLISG-SWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS--------- 176 (745)
T ss_pred CCcCceEec-ccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc---------
Confidence 345567889 9999999998754444333 2577999999988 8999999999999994 78899984
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
||++-|+.+++=|++ .|+|++.||.||+||+ +| ..+..+.||+..|++++..+ +++.|+|+| +|+|+|
T Consensus 177 -gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~g-----e~l~~~~ghtn~vYsis~~~-~~~~Ivs~g---EDrtlr 244 (745)
T KOG0301|consen 177 -GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DG-----EVLLEMHGHTNFVYSISMAL-SDGLIVSTG---EDRTLR 244 (745)
T ss_pred -cchhheeeeEEecCC-CeEeecCCceEEEEec-cC-----ceeeeeeccceEEEEEEecC-CCCeEEEec---CCceEE
Confidence 688999999999985 5899999999999999 44 36788899999999999887 678888875 999999
Q ss_pred EeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2348 VWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2348 LWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
||+. +.|+|.++--+..||++...+.||-++
T Consensus 245 iW~~----~e~~q~I~lPttsiWsa~~L~NgDIvv 275 (745)
T KOG0301|consen 245 IWKK----DECVQVITLPTTSIWSAKVLLNGDIVV 275 (745)
T ss_pred Eeec----CceEEEEecCccceEEEEEeeCCCEEE
Confidence 9996 588999984444899999988887543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-15 Score=172.68 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=131.4
Q ss_pred ccccceeeccccccccccccccCC--CCcC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCC--
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPP--ATVE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN-- 2264 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~--atv~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~-- 2264 (2389)
.|+...|| .-|.++++|+..+.. ..+. ..+|-.+.| +.+.|+|||.|.||++||+.+|+++.||. +|-
T Consensus 206 DD~kiVSG-lrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli---hHcea 279 (499)
T KOG0281|consen 206 DDEKIVSG-LRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI---HHCEA 279 (499)
T ss_pred cchhhhcc-cccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh---hhcce
Confidence 35567778 667788888764221 1111 134455544 56799999999999999999999987763 221
Q ss_pred ------------------------C--C--------CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCccc
Q 000080 2265 ------------------------V--P--------PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2389)
Q Consensus 2265 ------------------------~--p--------~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~ 2310 (2389)
| | .-||.+.|..|.|+. ++++|||.|+|||+|++.|+ ..
T Consensus 280 VLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~-----ef 352 (499)
T KOG0281|consen 280 VLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC-----EF 352 (499)
T ss_pred eEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce-----ee
Confidence 0 0 568999999999965 49999999999999999987 57
Q ss_pred ceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2311 l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
++++.||...|.++.|. |++++|| |.|+||||||+ ..|.|++-|+||+.-|+|+-|..+
T Consensus 353 vRtl~gHkRGIAClQYr---~rlvVSG---SSDntIRlwdi--~~G~cLRvLeGHEeLvRciRFd~k 411 (499)
T KOG0281|consen 353 VRTLNGHKRGIACLQYR---DRLVVSG---SSDNTIRLWDI--ECGACLRVLEGHEELVRCIRFDNK 411 (499)
T ss_pred ehhhhcccccceehhcc---CeEEEec---CCCceEEEEec--cccHHHHHHhchHHhhhheeecCc
Confidence 89999999999888886 4888885 79999999998 678999999999999999988764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=171.01 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=117.7
Q ss_pred eEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLW 2298 (2389)
+|+.+-|+|++. .+++||+|+.+++||+.++.-..++ .||+++|++.+|+|. ++.++|||-||+||||
T Consensus 112 pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l----------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL----------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe----------cCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 347789999766 6899999999999999877743333 368899999999998 5799999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
|+++.+ .+..++ .|..+|.+|.|.| +|++||||| ++.||+||+. ..++.+..+..|..-|+|+....++
T Consensus 182 DtR~~~----~~v~el-nhg~pVe~vl~lp-sgs~iasAg----Gn~vkVWDl~-~G~qll~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 182 DTRSLT----SRVVEL-NHGCPVESVLALP-SGSLIASAG----GNSVKVWDLT-TGGQLLTSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred EeccCC----ceeEEe-cCCCceeeEEEcC-CCCEEEEcC----CCeEEEEEec-CCceehhhhhcccceEEEEEeecCC
Confidence 999853 355555 5999999999999 999999985 6789999984 2334456666699999999999998
Q ss_pred hhhhcc
Q 000080 2379 NFALSK 2384 (2389)
Q Consensus 2379 ~~~~s~ 2384 (2389)
.+.||-
T Consensus 251 ~rLlS~ 256 (487)
T KOG0310|consen 251 TRLLSG 256 (487)
T ss_pred ceEeec
Confidence 777763
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-15 Score=172.33 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=129.1
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
++.+..|+|||++|+|||-||-|.+||+-+|+..+.++-....+ ..-|.+.|.++.||.|...+|||+.||.||+|.+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~--fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN--FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc--eeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 34566899999999999999999999999999876654211122 2235688999999999999999999999999999
Q ss_pred CCCCccCcccceeee-ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2301 EVGGRSNVRPMESCL-CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~-gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
++| .+++.+. +|+..|.++.||. |++.|.|+ |.|.||||--+ ..|+|++.+.||+.-|+...+.++|+
T Consensus 293 ~tG-----~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~---sfD~tvRiHGl--KSGK~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 293 ETG-----QCLRRFDRAHTKGVTCLSFSR-DNSQILSA---SFDQTVRIHGL--KSGKCLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred ecc-----hHHHHhhhhhccCeeEEEEcc-Ccchhhcc---cccceEEEecc--ccchhHHHhcCccccccceEEcCCCC
Confidence 998 3555554 7999999999999 77878886 58999999998 57899999999999999999999999
Q ss_pred hhhcc
Q 000080 2380 FALSK 2384 (2389)
Q Consensus 2380 ~~~s~ 2384 (2389)
.++|.
T Consensus 362 ~iisa 366 (508)
T KOG0275|consen 362 HIISA 366 (508)
T ss_pred eEEEe
Confidence 99874
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-14 Score=169.57 Aligned_cols=166 Identities=16% Similarity=0.242 Sum_probs=129.9
Q ss_pred eccccccccccccccCCCCcCceeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEE
Q 000080 2198 ALGWETQDDFEDYVDPPATVENISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA 2276 (2389)
Q Consensus 2198 g~~~d~~~~~~~~~d~~atv~ni~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~s 2276 (2389)
.|.||+.--+-++.-+.+ .|.+++|-|..| +++|||+|++|.+++=..-+-..+++ -|+..|++
T Consensus 131 ~F~~DSG~SvGei~GhSr-----~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r----------~HskFV~~ 195 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSR-----RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR----------EHSKFVNC 195 (603)
T ss_pred EEEecCCCccceeeccce-----eEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc----------ccccceee
Confidence 356666665555533333 347789999999 49999999999999943345556664 27799999
Q ss_pred EEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC----
Q 000080 2277 LQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL---- 2352 (2389)
Q Consensus 2277 VaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l---- 2352 (2389)
|.|||||.+|||++.||+|.|+|=.+|+ .+..+..-.+|.+.|++++|+| |++.+||+ |.|+|+||||+.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge--~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~---SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGE--KVGELEDSDAHKGSIFALSWSP-DSTQFLTV---SADKTIKIWDVSTNSL 269 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCcc--EEEEecCCCCccccEEEEEECC-CCceEEEe---cCCceEEEEEeeccce
Confidence 9999999999999999999999999984 2233333458999999999999 99999998 699999999961
Q ss_pred -------------------------------------CCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2353 -------------------------------------APPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2353 -------------------------------------~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
......++.+.||...|++++.+++|..++|-
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 01112245578899999999999999888763
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-14 Score=174.94 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=124.5
Q ss_pred eEEEEEEcCCCCeEEEEeCC-CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRPFFLVGSSN-THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~D-gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
+|.+++|+..|.+||-|+.- |.+-+|+|.+..-+ ++ +.||...++++++||||+++|+|++||.||+||
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV--lK--------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV--LK--------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeecccee--ee--------ccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 56889999999999998866 89999999755433 33 246889999999999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC----------------------------
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT---------------------------- 2351 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~---------------------------- 2351 (2389)
...| .++.|+..|+..|..|.|+. +|+.|.|+ |-|||||.||+
T Consensus 379 ~~Sg-----fC~vTFteHts~Vt~v~f~~-~g~~llss---SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 379 TQSG-----FCFVTFTEHTSGVTAVQFTA-RGNVLLSS---SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred ccCc-----eEEEEeccCCCceEEEEEEe-cCCEEEEe---ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 9986 68999999999999999999 99999996 69999999996
Q ss_pred --------------CCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2352 --------------LAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2352 --------------l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
..++|+.+-.|.||+++|.++++++.|+-..|
T Consensus 450 V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 12566666778999999999999999985544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=157.86 Aligned_cols=146 Identities=20% Similarity=0.207 Sum_probs=124.1
Q ss_pred eEEEEEEcCC-CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLW 2298 (2389)
.|.+|.+++. ++.++++|.|+||||||...++.++||. ||..-|.+.+|||. ++.|||+|.|++++||
T Consensus 106 EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~----------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw 175 (311)
T KOG0277|consen 106 EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN----------GHNSCIYQAAFSPHIPNLFASASGDGTLRLW 175 (311)
T ss_pred heEEeccccccceeEEeeccCCceEeecCCCCcceEeec----------CCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence 4588899995 5578888999999999999999999985 56799999999987 6999999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
|++..| ++ ..+..|+..+.+..|+.-+-.+||||| .|++||.||+.. -...+..|.||.-.|+.|.+||--
T Consensus 176 dvr~~g----k~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~-~r~pl~eL~gh~~AVRkvk~Sph~ 246 (311)
T KOG0277|consen 176 DVRSPG----KF-MSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRN-LRTPLFELNGHGLAVRKVKFSPHH 246 (311)
T ss_pred EecCCC----ce-eEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhh-ccccceeecCCceEEEEEecCcch
Confidence 999875 33 348899999999999977888999974 899999999842 224478899999999999999987
Q ss_pred hhhhccc
Q 000080 2379 NFALSKC 2385 (2389)
Q Consensus 2379 ~~~~s~~ 2385 (2389)
.=.|-.|
T Consensus 247 ~~lLaSa 253 (311)
T KOG0277|consen 247 ASLLASA 253 (311)
T ss_pred hhHhhhc
Confidence 6666554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=156.21 Aligned_cols=212 Identities=25% Similarity=0.444 Sum_probs=163.2
Q ss_pred CCCCCCcceeec-CCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEE-
Q 000080 36 APTRSTSTIDWL-PDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLA- 113 (2389)
Q Consensus 36 ap~~~~~ai~wl-pD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIa- 113 (2389)
+|.-.+-+.+|. |-+++ ++|.++=+.-||.| . +. ++-+.|.++...|...|.+|+|-|. .-|.+|
T Consensus 54 Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIiW--k------e~-~g~w~k~~e~~~h~~SVNsV~waph--eygl~La 120 (299)
T KOG1332|consen 54 GHSGPVWKVAWAHPKFGT--ILASCSYDGKVIIW--K------EE-NGRWTKAYEHAAHSASVNSVAWAPH--EYGLLLA 120 (299)
T ss_pred CCCCCeeEEeecccccCc--EeeEeecCceEEEE--e------cC-CCchhhhhhhhhhcccceeeccccc--ccceEEE
Confidence 455566788998 88866 89999999999999 2 22 3467788888777678999999995 234455
Q ss_pred -EecCCeEEEEeeCCCCCCCCccceeeEEe-cccceEEEEeecCC---C-----------CeEEEEecc--eEEeeccCC
Q 000080 114 -AASENCIFVFAHDSASSKGSFCWSQNAIL-VQGTKVEAIEWTGS---G-----------DGIVAGGME--TVLWKKKNT 175 (2389)
Q Consensus 114 -ASyDntIRVw~~d~~~~kgd~~W~~~~tL-~hssTV~sIAWSpd---G-----------~rLaSggdD--V~IW~~~~s 175 (2389)
||+|++|+|...+. + + .|...-.. .|+--|.+++|.|. | +||+|||-| |+||+..++
T Consensus 121 casSDG~vsvl~~~~--~-g--~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDS--S-G--GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred EeeCCCcEEEEEEcC--C-C--CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 46899999999882 1 1 35543333 48889999999998 7 889999998 999999999
Q ss_pred cEEEEEEeeccccceEE-EEeecCC-Cc----eEeeecccccccCCCCCCCceeEEEeeCCCcccee--ecccCCCCeeE
Q 000080 176 LWEIAWKFKENYPQNLV-SATWSIE-GP----SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIK--LELCHPQPVSM 247 (2389)
Q Consensus 176 ~Wecvwt~~~~~~~~iv-svaWSpd-G~----fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~--ve~aH~qdVn~ 247 (2389)
.|+...++ +.|...| +|+|+|. |. +|||+.|.+ |+||-.+++.+-.. +...-+..|..
T Consensus 196 ~w~~e~~l--~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~------------viIwt~~~e~e~wk~tll~~f~~~~w~ 261 (299)
T KOG1332|consen 196 SWKLERTL--EGHKDWVRDVAWAPSVGLPKSTIASCSQDGT------------VIIWTKDEEYEPWKKTLLEEFPDVVWR 261 (299)
T ss_pred chhhhhhh--hhcchhhhhhhhccccCCCceeeEEecCCCc------------EEEEEecCccCcccccccccCCcceEE
Confidence 99988764 3445555 9999996 43 999999865 66676655544333 33445688999
Q ss_pred EEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeecCCcccc
Q 000080 248 VQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRK 292 (2389)
Q Consensus 248 V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d~Gk~kk 292 (2389)
++|+++ .|+|+-++.|+-|.||+|.-.|+-++
T Consensus 262 vSWS~s-------------Gn~LaVs~GdNkvtlwke~~~Gkw~~ 293 (299)
T KOG1332|consen 262 VSWSLS-------------GNILAVSGGDNKVTLWKENVDGKWEE 293 (299)
T ss_pred EEEecc-------------ccEEEEecCCcEEEEEEeCCCCcEEE
Confidence 999993 68899999999999999998887754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=169.38 Aligned_cols=177 Identities=13% Similarity=0.150 Sum_probs=142.5
Q ss_pred cceeeccccccccccccccCC----CCc--CceeEEEEEE-cCCCCeEEEEeCCCcEEEeecCCC--ceeeEecccCCCC
Q 000080 2194 IGASALGWETQDDFEDYVDPP----ATV--ENISTRAFSS-HPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAAN 2264 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~~----atv--~ni~VrsVAF-sPdG~~LASGS~DgTIRLWDl~tG--k~l~Tl~vl~gh~ 2264 (2389)
.+.|. +=|++.++|....-. .++ +.-+|.+++. -++...+||||-|+.|.|||+.+| +.+.++...+...
T Consensus 87 tlIS~-SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 87 TLISA-SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred ceEEe-cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 45666 668888888763221 111 1125699999 899999999999999999999988 4555554322221
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC
Q 000080 2265 VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI 2344 (2389)
Q Consensus 2265 ~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~ 2344 (2389)
..-||...|+++|-+|.|..|++|+..+-+|+||.++. +.+..++||+..|+.+-.++ ||+.+.|| |.|+
T Consensus 166 -l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~-----~kimkLrGHTdNVr~ll~~d-DGt~~ls~---sSDg 235 (735)
T KOG0308|consen 166 -LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC-----KKIMKLRGHTDNVRVLLVND-DGTRLLSA---SSDG 235 (735)
T ss_pred -CCCCCccceeeeecCCcceEEEecCcccceEEeccccc-----cceeeeeccccceEEEEEcC-CCCeEeec---CCCc
Confidence 12388899999999999999999999999999999996 45778899999999999998 99999997 5899
Q ss_pred eEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2345 NVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2345 TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
||||||+ ...+|++++.-|..+||++.-+|+..-.-|
T Consensus 236 tIrlWdL--gqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 236 TIRLWDL--GQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred eEEeeec--cccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 9999998 467899999999999999998887654433
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-14 Score=178.44 Aligned_cols=153 Identities=13% Similarity=0.079 Sum_probs=120.0
Q ss_pred CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCC--------------------------------ceeeEe-----ccc
Q 000080 2218 ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--------------------------------KATATY-----GVL 2260 (2389)
Q Consensus 2218 ~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tG--------------------------------k~l~Tl-----~vl 2260 (2389)
+...|+++.||+||+||||||.|+.||||.+... ..-++. ...
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 3456799999999999999999999999998650 000000 000
Q ss_pred CC-----CCC-----C---CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEe
Q 000080 2261 PA-----ANV-----P---PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI 2327 (2389)
Q Consensus 2261 ~g-----h~~-----p---~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFS 2327 (2389)
++ ... | ..||.+.|-.+.+|-++ +|.|+|.|.|||||++... .++..+. |...|++|+|+
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~-----~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK-----ECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc-----ceeeEEe-cCCeeEEEEec
Confidence 11 000 0 56999999999999885 8999999999999999864 4566654 99999999999
Q ss_pred cCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2328 TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2328 P~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
|-|.++++|| |-|+.||||++ +..+-+...+.| .-|+++++.|+|..|+=
T Consensus 419 PvDDryFiSG---SLD~KvRiWsI--~d~~Vv~W~Dl~-~lITAvcy~PdGk~avI 468 (712)
T KOG0283|consen 419 PVDDRYFISG---SLDGKVRLWSI--SDKKVVDWNDLR-DLITAVCYSPDGKGAVI 468 (712)
T ss_pred ccCCCcEeec---ccccceEEeec--CcCeeEeehhhh-hhheeEEeccCCceEEE
Confidence 9999999995 79999999998 333445666666 78999999999999874
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-14 Score=179.85 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=134.8
Q ss_pred cccccccccccCC--CC----cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEE
Q 000080 2202 ETQDDFEDYVDPP--AT----VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS 2275 (2389)
Q Consensus 2202 d~~~~~~~~~d~~--at----v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~ 2275 (2389)
+.+.++|+..... +| ..|+ -+|+|||-|.+.|+||.|+.+++||.+..-|..+|. ||...|.
T Consensus 91 sgtiK~wDleeAk~vrtLtgh~~~~--~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~----------s~~~vv~ 158 (825)
T KOG0267|consen 91 SGTIKVWDLEEAKIVRTLTGHLLNI--TSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK----------SHTRVVD 158 (825)
T ss_pred CCceeeeehhhhhhhhhhhccccCc--ceeeeccceEEeccccccccceehhhhccCceeeec----------CCcceeE
Confidence 3467777764222 23 3344 788999999999999999999999998788999985 4678899
Q ss_pred EEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCC
Q 000080 2276 ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP 2355 (2389)
Q Consensus 2276 sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~t 2355 (2389)
.++|+|||+++|+|++|++|++||+..| +....+.+|+..+.++.|+| ..-++|+| |.|+||++||+ .+
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~ag-----k~~~ef~~~e~~v~sle~hp-~e~Lla~G---s~d~tv~f~dl--et 227 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAG-----KLSKEFKSHEGKVQSLEFHP-LEVLLAPG---SSDRTVRFWDL--ET 227 (825)
T ss_pred EEeecCCCceeeccCCcceeeeeccccc-----ccccccccccccccccccCc-hhhhhccC---CCCceeeeecc--ce
Confidence 9999999999999999999999999886 35667788999999999999 65777775 68999999998 34
Q ss_pred CCceEEEEeecCcEEEEeecccchhhhcccc
Q 000080 2356 TSSRASITCHEGLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2356 g~~v~sL~GH~~~V~svA~~~~~~~~~s~~~ 2386 (2389)
-..+-+......+|.|+++.++|..+++-|.
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred eEEeeccCCccCCceeeeecCCceeeecCch
Confidence 4556667777999999999999999988764
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=170.22 Aligned_cols=155 Identities=16% Similarity=0.202 Sum_probs=130.6
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCC---------------------------------CC-
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN---------------------------------VP- 2266 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~---------------------------------~p- 2266 (2389)
.|.+|.|+++|.+||.|-.+|+|.|||..+.+.++++.. .|. +.
T Consensus 219 ~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~--~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~ 296 (484)
T KOG0305|consen 219 LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG--SHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVST 296 (484)
T ss_pred ceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC--CcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhh
Confidence 469999999999999999999999999988887777642 132 11
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeE
Q 000080 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2389)
Q Consensus 2267 ~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TV 2346 (2389)
..||...|..+++++||++||||+.|+.|.|||.... .+..++..|...|..++|.|-...+||||| |+.|++|
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-----~p~~~~~~H~aAVKA~awcP~q~~lLAsGG-Gs~D~~i 370 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-----EPKFTFTEHTAAVKALAWCPWQSGLLATGG-GSADRCI 370 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-----cccEEEeccceeeeEeeeCCCccCceEEcC-CCcccEE
Confidence 5679999999999999999999999999999999543 688899999999999999999999999987 7899999
Q ss_pred EEeeCC-----------------------------------------CCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2347 VVWDTL-----------------------------------------APPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2347 rLWD~l-----------------------------------------~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
++||+. .++-+.+..+.||+.+|-.+|-+|+|..+++
T Consensus 371 ~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred EEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 999972 0111234557889999999999999888765
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=158.34 Aligned_cols=172 Identities=21% Similarity=0.237 Sum_probs=143.6
Q ss_pred cceeeccccccccccccc--cCCCCcCc-eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC
Q 000080 2194 IGASALGWETQDDFEDYV--DPPATVEN-ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA 2270 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~--d~~atv~n-i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH 2270 (2389)
|..|| ..|.|.++|+.. +...+.++ -.+.+|.|..++..+.||+-|+.|++||++++..+.++. ||
T Consensus 147 lv~Sg-sdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls----------Gh 215 (338)
T KOG0265|consen 147 LVCSG-SDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS----------GH 215 (338)
T ss_pred EEEec-CCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEee----------cc
Confidence 56677 788888888875 44456654 467999999999999999999999999999999998885 67
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCC----CeeEEEEecCCCCEEEEeecCCCCCeE
Q 000080 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS----HAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2389)
Q Consensus 2271 ~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~----~V~sVAFSP~DGslLASAG~sS~D~TV 2346 (2389)
.+.|+.+..||+|.++.|-+.|+||++||++-.. ...+++.-++||.. ....++++| +++.+.+ | |.|+.|
T Consensus 216 ~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~-p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~a-g--s~dr~v 290 (338)
T KOG0265|consen 216 ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA-PSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITA-G--SADRFV 290 (338)
T ss_pred cCceeeEEeccCCCccccccccceEEEEEecccC-CCCceEEEeecchhhhhhhcceeeccC-CCCcccc-c--cccceE
Confidence 8999999999999999999999999999998642 22245666677553 334789999 8888865 4 799999
Q ss_pred EEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2347 VVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2347 rLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
.+||+. ...++..|.||.+-|.+++++|.-.++||
T Consensus 291 yvwd~~--~r~~lyklpGh~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 291 YVWDTT--SRRILYKLPGHYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred EEeecc--cccEEEEcCCcceeEEEeeecCCCcEEEE
Confidence 999972 44678999999999999999999999887
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-13 Score=167.14 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=138.4
Q ss_pred cccccccccccc---cCCCCc------------C-ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCC
Q 000080 2200 GWETQDDFEDYV---DPPATV------------E-NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA 2263 (2389)
Q Consensus 2200 ~~d~~~~~~~~~---d~~atv------------~-ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh 2263 (2389)
+-|++.++|+|. +.+.|. + .--|-++++||||++||.|=-|.||++|=+.+=+..-++.
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY----- 547 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY----- 547 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-----
Confidence 668888888884 322221 1 0146899999999999999999999999998776655542
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2264 NVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
||.=+|.++.+|||++.++|||.|.+||+|-+.=| .+.+++-+|.+.|.+|.|-| .....-|+| .|
T Consensus 548 -----GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-----DCHKS~fAHdDSvm~V~F~P-~~~~FFt~g---KD 613 (888)
T KOG0306|consen 548 -----GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-----DCHKSFFAHDDSVMSVQFLP-KTHLFFTCG---KD 613 (888)
T ss_pred -----ccccceeEEeccCCcCeEEeccCCCceEEeccccc-----hhhhhhhcccCceeEEEEcc-cceeEEEec---Cc
Confidence 57778999999999999999999999999999887 36788889999999999999 667777764 99
Q ss_pred CeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2344 INVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+.||=||- ..-.+++.|.||...|+|+|.+|.|+|.+|--
T Consensus 614 ~kvKqWDg--~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 614 GKVKQWDG--EKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred ceEEeech--hhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 99999995 24467999999999999999999999999854
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=171.48 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=116.9
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
..|++++|..-+..|+|||.|.|+|+||..+|+|+.++. ||...|+++..-+ ..+.+||.|.|||+||
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~----------gh~stv~~~~~~~--~~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ----------GHTSSVRCLTIDP--FLLVSGSRDNTVKVWD 317 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec----------CCCceEEEEEccC--ceEeeccCCceEEEEe
Confidence 456999999988899999999999999999999999984 5778888887755 5899999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
++++ ..+.++.||...|++|.++ +.++++| +.|++|++||+ .+++|+++|+||+++|.++.+..
T Consensus 318 v~n~-----~~l~l~~~h~~~V~~v~~~---~~~lvsg---s~d~~v~VW~~--~~~~cl~sl~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 318 VTNG-----ACLNLLRGHTGPVNCVQLD---EPLLVSG---SYDGTVKVWDP--RTGKCLKSLSGHTGRVYSLIVDS 381 (537)
T ss_pred ccCc-----ceEEEeccccccEEEEEec---CCEEEEE---ecCceEEEEEh--hhceeeeeecCCcceEEEEEecC
Confidence 9986 4677888899999999998 4788875 68999999998 48999999999999999998776
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=169.79 Aligned_cols=214 Identities=18% Similarity=0.371 Sum_probs=155.1
Q ss_pred CCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccce--------------eeeeccCCCCCeeEEE
Q 000080 36 APTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFR--------------QVFALSDNSLPVTSIS 101 (2389)
Q Consensus 36 ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~--------------Qviegh~d~~dVk~Va 101 (2389)
.|..+.+-+-|+|| | +.+|.|+.+.+|..|=-++ -..|+.|. -++.+|+. +|..|+
T Consensus 67 ~h~~sv~CVR~S~d--G-~~lAsGSDD~~v~iW~~~~-----~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~--DV~Dv~ 136 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPD--G-SYLASGSDDRLVMIWERAE-----IGSGTVFGSTGGAKNVESWKVVSILRGHDS--DVLDVN 136 (942)
T ss_pred cccCceeEEEECCC--C-CeEeeccCcceEEEeeecc-----cCCcccccccccccccceeeEEEEEecCCC--ccceec
Confidence 46677788889999 8 5999999999999991111 12345552 35566654 999999
Q ss_pred EcCCCCCCCcEEE--ecCCeEEEEeeCCCCCCCCccceeeEEe-cccceEEEEeecCCCCeEEEEecc--eEEeeccCCc
Q 000080 102 WSPETPSIGQLAA--ASENCIFVFAHDSASSKGSFCWSQNAIL-VQGTKVEAIEWTGSGDGIVAGGME--TVLWKKKNTL 176 (2389)
Q Consensus 102 WSPd~~~~GeIaA--SyDntIRVw~~d~~~~kgd~~W~~~~tL-~hssTV~sIAWSpdG~rLaSggdD--V~IW~~~~s~ 176 (2389)
|+|+ +.++| |+||+|-||..- . +.+..++ .|.+-|-.++|+|-|+++||=+|| ++||+. +.
T Consensus 137 Wsp~----~~~lvS~s~DnsViiwn~~------t--F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt--~d 202 (942)
T KOG0973|consen 137 WSPD----DSLLVSVSLDNSVIIWNAK------T--FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT--SD 202 (942)
T ss_pred cCCC----ccEEEEecccceEEEEccc------c--ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEc--cc
Confidence 9996 77776 479999999876 2 2455555 499999999999999999999999 999994 44
Q ss_pred EEEEEEeecccc-----ceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEe
Q 000080 177 WEIAWKFKENYP-----QNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQW 250 (2389)
Q Consensus 177 Wecvwt~~~~~~-----~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W 250 (2389)
|.+.-++..... -.+...+|||||. |||.-+... ...++.|.+.+ .-...+-..+|..+|-+|+.
T Consensus 203 w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~--------~~~~~~IieR~-tWk~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 203 WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG--------GKSTIAIIERG-TWKVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC--------CcceeEEEecC-CceeeeeeecCCCceEEEEe
Confidence 776654321111 1344889999999 998877421 22334444332 22233446789999999999
Q ss_pred ccCCCCC-CCCCCccccCc----eEEeeecCCeEEEEE
Q 000080 251 RPSTRRH-SPGDTKRSQRH----VLLTCCLDGTVRLWC 283 (2389)
Q Consensus 251 ~Ps~~~~-~~~Dgk~~~~n----ILAScSdDgTVRLW~ 283 (2389)
+|. .|. ++.+|+....+ ++|++|.|+++-||.
T Consensus 274 nP~-lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 274 NPK-LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred ChH-HhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 993 444 55666664454 999999999999999
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=153.90 Aligned_cols=123 Identities=15% Similarity=0.265 Sum_probs=98.5
Q ss_pred eEEEEEEcC-CCCeEEEEeCCCcEEEeecCC-CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHP-LRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsP-dG~~LASGS~DgTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
+|.+|+||| ...++++||.|++||+||+.. |..+.+.. .-|.+.|-+|+||-||.++++|+.|+.+|+|
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~---------~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ---------QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhh---------hccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 348899999 555777999999999999986 45444322 1256889999999999999999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCC-CCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D-GslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
|+.++ ...+...|.+.|..+.|.++- -+.|||| |.|+|||.||+. ..+.+.+++
T Consensus 100 DL~S~------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDKTlKfWD~R--~~~pv~t~~ 154 (347)
T KOG0647|consen 100 DLASG------QVSQVAAHDAPVKTCHWVPGMNYQCLVTG---SWDKTLKFWDTR--SSNPVATLQ 154 (347)
T ss_pred EccCC------CeeeeeecccceeEEEEecCCCcceeEec---ccccceeecccC--CCCeeeeee
Confidence 99986 256677899999999999832 2378885 799999999995 334555554
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.3e-13 Score=158.16 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=136.6
Q ss_pred cccccceeeccccccccccccc-cCCCCcC--------------------------c--eeEEEEEEcCCCCeEEEEeCC
Q 000080 2190 GYAGIGASALGWETQDDFEDYV-DPPATVE--------------------------N--ISTRAFSSHPLRPFFLVGSSN 2240 (2389)
Q Consensus 2190 g~~~~~Asg~~~d~~~~~~~~~-d~~atv~--------------------------n--i~VrsVAFsPdG~~LASGS~D 2240 (2389)
++..+.+|| +||++..+|.+. ++..+++ + -+|.+|-|++ ...+.|+|+|
T Consensus 203 ~sgtr~~Sg-S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwD 280 (423)
T KOG0313|consen 203 SSGTRFCSG-SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWD 280 (423)
T ss_pred CCCCeEEee-cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeeccc
Confidence 345567888 999999999842 1111111 1 2789999999 6678999999
Q ss_pred CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCC
Q 000080 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSH 2320 (2389)
Q Consensus 2241 gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~ 2320 (2389)
.|||.||+.+|+++.++.. .....+|..+|.-++||+||.|..+||||.++++ ..-+..++.||.+.
T Consensus 281 HTIk~WDletg~~~~~~~~-----------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~--gs~v~~s~~gH~nw 347 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKSTLTT-----------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD--GSVVSQSLIGHKNW 347 (423)
T ss_pred ceEEEEEeecccceeeeec-----------CcceeEeecccccceeeecCCCCceeecCCCCCC--CceeEEeeecchhh
Confidence 9999999999999888741 2568999999999999999999999999999974 33466889999999
Q ss_pred eeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2321 AMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2321 V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
|.+|-++|-+-..++|+ |.|+|+||||+. .+...+..+.+|...|-++.-.+.
T Consensus 348 Vssvkwsp~~~~~~~S~---S~D~t~klWDvR-S~k~plydI~~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSG---SYDNTVKLWDVR-STKAPLYDIAGHNDKVLSVDWNEG 400 (423)
T ss_pred hhheecCCCCceEEEEE---ecCCeEEEEEec-cCCCcceeeccCCceEEEEeccCC
Confidence 99999999666677775 799999999995 344469999999999988876554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=166.66 Aligned_cols=173 Identities=13% Similarity=0.209 Sum_probs=135.9
Q ss_pred ccccccceeeccccccccccccccCCCCcC-----ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCC
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPPATVE-----NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA 2263 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~atv~-----ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh 2263 (2389)
|=..-+++|+ |-|....+|++.+.-..+. +-+|++++|+++|..++|+|.|++|||||+++|+++..|.. +
T Consensus 224 p~~~hLlLS~-gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~- 299 (503)
T KOG0282|consen 224 PKKGHLLLSG-GMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL--D- 299 (503)
T ss_pred cceeeEEEec-CCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec--C-
Confidence 4455667788 8888889998875323322 34779999999999999999999999999999999999851 1
Q ss_pred CCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC
Q 000080 2264 NVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~ 2342 (2389)
..+++|.|.||+ +.|.+|+.|+.|+.||++++ +.+..+..|-+.|.++.|.+ +|+..+|+ |+
T Consensus 300 --------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-----kvvqeYd~hLg~i~~i~F~~-~g~rFiss---SD 362 (503)
T KOG0282|consen 300 --------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-----KVVQEYDRHLGAILDITFVD-EGRRFISS---SD 362 (503)
T ss_pred --------CCceeeecCCCCCcEEEEecCCCcEEEEeccch-----HHHHHHHhhhhheeeeEEcc-CCceEeee---cc
Confidence 457999999999 99999999999999999987 46677778999999999999 88999986 79
Q ss_pred CCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2343 GINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2343 D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
|++||||+...+ ...-....-+..-..|++.+|.|+|..-
T Consensus 363 dks~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 363 DKSVRIWENRIP-VPIKNIADPEMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred CccEEEEEcCCC-ccchhhcchhhccCcceecCCCCCeehh
Confidence 999999997322 1111112222223668888888887653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.7e-13 Score=156.63 Aligned_cols=158 Identities=22% Similarity=0.325 Sum_probs=117.5
Q ss_pred cccCCCccccCccccccccccccceeeccccccccccccccCCCCcCceeEEEEEEcCCCC-eEEEEeCCCcEEEeecCC
Q 000080 2172 SLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGK 2250 (2389)
Q Consensus 2172 ~~~~~~~~~~~~~~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~atv~ni~VrsVAFsPdG~-~LASGS~DgTIRLWDl~t 2250 (2389)
|+.+.++-++|--.++| +-|+-..--|.+...+-+.+.-+|-.+.|||+-. .|||+|.||+|||||++.
T Consensus 220 Sp~~~g~LlsGDc~~~I----------~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGI----------HLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred ccccccccccCccccce----------EeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 44455555554444443 2344444445443333344445667889999865 799999999999999998
Q ss_pred CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCC
Q 000080 2251 DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS 2330 (2389)
Q Consensus 2251 Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D 2330 (2389)
+....++.. .+ |.+.|+.|.||-+-.+||||++|||++|||+++-. .-+|+.++.-|..+|++|.|+|.+
T Consensus 290 ~~~~~~~~~-kA-------h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~--~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 290 GPKKAAVST-KA-------HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK--SGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred CCccceeEe-ec-------cCCceeeEEccCCcceeeecCCCceEEEEEhhhcc--CCCcceeEEeccCCeeEEEecccc
Confidence 843333221 34 45789999999887899999999999999999852 227889999999999999999988
Q ss_pred CCEEEEeecCCCCCeEEEeeCC
Q 000080 2331 GSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2331 GslLASAG~sS~D~TVrLWD~l 2352 (2389)
.+.||++ ++|.+|.|||+.
T Consensus 360 ~s~iaas---g~D~QitiWDls 378 (440)
T KOG0302|consen 360 DSVIAAS---GEDNQITIWDLS 378 (440)
T ss_pred CceEEec---cCCCcEEEEEee
Confidence 8888876 489999999983
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-13 Score=163.29 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=120.5
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl 2300 (2389)
|.+++|-.||++||.|...|.|+++|..+-..++.++ +|+++|..+.|+|++ ..|++||+|+.+++||+
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~----------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLY----------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHh----------hccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 3888999999999999999999999965534566664 367889999999986 68889999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
.++ .....+++|++.|++.+++|.++.+++|| |-|++||+||+...+ ..+.+|. |..+|-++-+.|.|-.
T Consensus 141 s~a-----~v~~~l~~htDYVR~g~~~~~~~hivvtG---sYDg~vrl~DtR~~~-~~v~eln-hg~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 141 STA-----YVQAELSGHTDYVRCGDISPANDHIVVTG---SYDGKVRLWDTRSLT-SRVVELN-HGCPVESVLALPSGSL 210 (487)
T ss_pred CCc-----EEEEEecCCcceeEeeccccCCCeEEEec---CCCceEEEEEeccCC-ceeEEec-CCCceeeEEEcCCCCE
Confidence 986 23568899999999999999888899996 589999999996433 5577777 8999999999999876
Q ss_pred hhc
Q 000080 2381 ALS 2383 (2389)
Q Consensus 2381 ~~s 2383 (2389)
+.|
T Consensus 211 ias 213 (487)
T KOG0310|consen 211 IAS 213 (487)
T ss_pred EEE
Confidence 655
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-13 Score=160.21 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=139.0
Q ss_pred cceeeccccccccccccccCCCCcC---------ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCC
Q 000080 2194 IGASALGWETQDDFEDYVDPPATVE---------NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN 2264 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~~atv~---------ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~ 2264 (2389)
..++| ++|-+.++|+|....++.. +-.|++++|+|+|..|+..|....++|.|- .|..+..+. .|..
T Consensus 181 R~~sG-s~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~--KGDQ 256 (641)
T KOG0772|consen 181 RFVSG-SLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFS--KGDQ 256 (641)
T ss_pred eeeec-cccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc-CCceeeeee--ccch
Confidence 45788 9999999999974444322 236799999999999998899999999994 676554331 2333
Q ss_pred C-----CCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceee--eecCCCeeEEEEecCCCCEEEE
Q 000080 2265 V-----PPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESC--LCFSSHAMDVSYITSSGSVIAA 2336 (2389)
Q Consensus 2265 ~-----p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl--~gHs~~V~sVAFSP~DGslLAS 2336 (2389)
+ -.-||.+.+++..|.|+. ..|.|+|.|||+||||++.. +++.+.+.+- .|-.-.+.+.+|+| ||.+||+
T Consensus 257 YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAa 334 (641)
T KOG0772|consen 257 YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT-KSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAA 334 (641)
T ss_pred hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc-hhheeEEeeccCCCcccCceeeecCC-Ccchhhh
Confidence 1 256899999999999997 69999999999999999875 3343444332 23334567899999 9999997
Q ss_pred eecCCCCCeEEEeeCCCCCCCceEE-EEeecC--cEEEEeecccchhhhcc
Q 000080 2337 AGHSSNGINVVVWDTLAPPTSSRAS-ITCHEG--LYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2337 AG~sS~D~TVrLWD~l~~tg~~v~s-L~GH~~--~V~svA~~~~~~~~~s~ 2384 (2389)
| ..||.|++||....+...... =+.|.. .|+||+||.+||..||.
T Consensus 335 g---c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 335 G---CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred c---ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence 4 699999999974333333333 367888 99999999999999985
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=149.14 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=118.2
Q ss_pred EEEEEEcCCCC-eEEEEeCCCcEEEeecCCC-ceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEe
Q 000080 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2222 VrsVAFsPdG~-~LASGS~DgTIRLWDl~tG-k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLW 2298 (2389)
+..|+|+++-. .+++++.||++||||.... ..++.|+ -|...|.+|-.++- ++.+.++|.|+|||||
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k----------EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK----------EHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH----------hhhhheEEeccccccceeEEeeccCCceEee
Confidence 37889999854 7889999999999996544 3667775 26799999999986 5778888999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
+.+.+ +-++|+.||...|+.++|+|..+.++|++ |.|++.||||+..+ |+.+. +..|...|.|...+|--
T Consensus 133 ~~~r~-----~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~---Sgd~~l~lwdvr~~-gk~~~-i~ah~~Eil~cdw~ky~ 202 (311)
T KOG0277|consen 133 DPNRP-----NSVQTFNGHNSCIYQAAFSPHIPNLFASA---SGDGTLRLWDVRSP-GKFMS-IEAHNSEILCCDWSKYN 202 (311)
T ss_pred cCCCC-----cceEeecCCccEEEEEecCCCCCCeEEEc---cCCceEEEEEecCC-CceeE-EEeccceeEeecccccC
Confidence 99865 46889999999999999999999999997 68999999998644 65544 89999999999888866
Q ss_pred hhhh
Q 000080 2379 NFAL 2382 (2389)
Q Consensus 2379 ~~~~ 2382 (2389)
+..|
T Consensus 203 ~~vl 206 (311)
T KOG0277|consen 203 HNVL 206 (311)
T ss_pred CcEE
Confidence 5544
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-13 Score=170.80 Aligned_cols=143 Identities=17% Similarity=0.154 Sum_probs=119.9
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCC-------Cc-----------eeeEecccCCCCCCCCCCCCCEEEEEECC
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGK-------DK-----------ATATYGVLPAANVPPPYALASISALQFDH 2281 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~t-------Gk-----------~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP 2281 (2389)
..|.+|-|+|||++||+||+|+.|.+|+... |. ++.+|+ ||.+.|..|+++|
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~----------~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR----------GHDSDVLDVNWSP 139 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe----------cCCCccceeccCC
Confidence 3678999999999999999999999999762 11 233443 6789999999999
Q ss_pred CCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEE
Q 000080 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS 2361 (2389)
Q Consensus 2282 DG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~s 2361 (2389)
||.+|||+|.|++|-+||..+. +.+..+.+|++.|-.|+|.| -|+++||- |+|+||++|++. .-++.++
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-----~~~~vl~~H~s~VKGvs~DP-~Gky~ASq---sdDrtikvwrt~--dw~i~k~ 208 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-----ELLKVLRGHQSLVKGVSWDP-IGKYFASQ---SDDRTLKVWRTS--DWGIEKS 208 (942)
T ss_pred CccEEEEecccceEEEEccccc-----eeeeeeecccccccceEECC-ccCeeeee---cCCceEEEEEcc--cceeeEe
Confidence 9999999999999999999987 46788999999999999999 99999996 699999999973 3445677
Q ss_pred EEeecC------cEEEEeecccchhhhc
Q 000080 2362 ITCHEG------LYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2362 L~GH~~------~V~svA~~~~~~~~~s 2383 (2389)
+.++.+ -+.-++=||||.++.|
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecc
Confidence 766554 3457888899888765
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-14 Score=168.65 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=119.8
Q ss_pred eEEEEEEcC-CCCeEEEEeCCCcEEEeecCC-CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHP-LRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsP-dG~~LASGS~DgTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
.|.++.|.| .+.+|+|||-|+.|+|||+.. ++|++||. ||...|++++||++|..|.|+|-|++||||
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~----------gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK----------GHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh----------cchhhhhhhhccccCCeeeeeecceeeeee
Confidence 458889999 899999999999999999876 78999995 577899999999999999999999999999
Q ss_pred eCCCCCccCcccceeeeecCC-CeeEEEEecCCC-CEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSS-HAMDVSYITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~-~V~sVAFSP~DG-slLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
|++||. +...+ |.+ .+++|-|.| |+ +.+.+|| .|+.|+.||+ .+++.+|...-|-+.|..+.|-+
T Consensus 286 DtETG~-----~~~~f--~~~~~~~cvkf~p-d~~n~fl~G~---sd~ki~~wDi--Rs~kvvqeYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 286 DTETGQ-----VLSRF--HLDKVPTCVKFHP-DNQNIFLVGG---SDKKIRQWDI--RSGKVVQEYDRHLGAILDITFVD 352 (503)
T ss_pred ccccce-----EEEEE--ecCCCceeeecCC-CCCcEEEEec---CCCcEEEEec--cchHHHHHHHhhhhheeeeEEcc
Confidence 999983 33333 443 456899999 55 6666653 7899999998 46788999999999999999999
Q ss_pred cchhhhcc
Q 000080 2377 LLNFALSK 2384 (2389)
Q Consensus 2377 ~~~~~~s~ 2384 (2389)
.|++-+|.
T Consensus 353 ~g~rFiss 360 (503)
T KOG0282|consen 353 EGRRFISS 360 (503)
T ss_pred CCceEeee
Confidence 99876653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=151.20 Aligned_cols=186 Identities=12% Similarity=0.160 Sum_probs=144.0
Q ss_pred CCccccCccccccccccccceeeccccccccccccccCCCCc------CceeEEEEEEcCCCCeEEEEeCCCcEEEeecC
Q 000080 2176 PGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPATV------ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFG 2249 (2389)
Q Consensus 2176 ~~~~~~~~~~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~atv------~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~ 2249 (2389)
|+.++....+|+- -.+.|+|.| +||.+.|.|++.+.-..+ .+-+|-+++|+-||..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP-~~~~~~~A~-SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSP-QADNLLAAG-SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEecc-ccCceEEec-ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 3444446677764 556677778 999999999997531221 12478999999999999999999999999999
Q ss_pred CCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC--EEEEEeCCCcEEEeeCCCCC---------c-------------
Q 000080 2250 KDKATATYGVLPAANVPPPYALASISALQFDHYGH--RFASAALDGTVCTWQLEVGG---------R------------- 2305 (2389)
Q Consensus 2250 tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~--~LASgS~DgTVkLWDl~tgg---------r------------- 2305 (2389)
+|+..+.- .|.+.|+.+.|-+... .|++||+|.|||.||.+... |
T Consensus 103 S~Q~~~v~-----------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vV 171 (347)
T KOG0647|consen 103 SGQVSQVA-----------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVV 171 (347)
T ss_pred CCCeeeee-----------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEE
Confidence 99654432 2678899999987776 99999999999999997641 1
Q ss_pred ----------------------------------------------------------cCcccceeeeecC---------
Q 000080 2306 ----------------------------------------------------------SNVRPMESCLCFS--------- 2318 (2389)
Q Consensus 2306 ----------------------------------------------------------s~~k~l~tl~gHs--------- 2318 (2389)
.+++.-+++.||.
T Consensus 172 ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 0224456778887
Q ss_pred CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2319 SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2319 ~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+.|++|+|+| .-..|||+| .||+...||- .....+.+-+-|...|+|-++..+|..
T Consensus 252 YaVNsi~FhP-~hgtlvTaG---sDGtf~FWDk--dar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 252 YAVNSIAFHP-VHGTLVTAG---SDGTFSFWDK--DARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred EEecceEeec-ccceEEEec---CCceEEEecc--hhhhhhhccCcCCCccceeEecCCCCE
Confidence 3577999999 567788997 7999999995 223346777789999999999999974
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.2e-13 Score=168.83 Aligned_cols=156 Identities=16% Similarity=0.243 Sum_probs=127.3
Q ss_pred cccceeeccccccccccccccCCCC--cC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPPAT--VE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~at--v~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
++.+.+| +.|.++++|+.....-+ +. .-.|+.+.. .+..+++||.|.|||+||+.+|+++.+++
T Consensus 261 ~~~lvsg-S~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~--------- 328 (537)
T KOG0274|consen 261 GDKLVSG-STDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLR--------- 328 (537)
T ss_pred CCEEEEE-ecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEec---------
Confidence 5667888 88999999986432111 11 113344444 44568999999999999999999999985
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
||.+.|++|+++ +..+.+|+.|++|++||++++ +++.+++||+..|+++.+.+ . ..+.+| |.|++||
T Consensus 329 -~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-----~cl~sl~gH~~~V~sl~~~~-~-~~~~Sg---s~D~~Ik 395 (537)
T KOG0274|consen 329 -GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-----KCLKSLSGHTGRVYSLIVDS-E-NRLLSG---SLDTTIK 395 (537)
T ss_pred -cccccEEEEEec--CCEEEEEecCceEEEEEhhhc-----eeeeeecCCcceEEEEEecC-c-ceEEee---eeccceE
Confidence 477999999999 889999999999999999986 68999999999999998876 3 788886 6899999
Q ss_pred EeeCCCCCC-CceEEEEeecCcEEEEee
Q 000080 2348 VWDTLAPPT-SSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2348 LWD~l~~tg-~~v~sL~GH~~~V~svA~ 2374 (2389)
+||+ .+. +|+++|.+|+.-|.++..
T Consensus 396 vWdl--~~~~~c~~tl~~h~~~v~~l~~ 421 (537)
T KOG0274|consen 396 VWDL--RTKRKCIHTLQGHTSLVSSLLL 421 (537)
T ss_pred eecC--CchhhhhhhhcCCccccccccc
Confidence 9998 455 799999999999876654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-13 Score=166.89 Aligned_cols=169 Identities=18% Similarity=0.224 Sum_probs=134.2
Q ss_pred cccccccccccccC-CCCcC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCC--ceeeEecccCCCCCCCCCCCCCE
Q 000080 2200 GWETQDDFEDYVDP-PATVE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASI 2274 (2389)
Q Consensus 2200 ~~d~~~~~~~~~d~-~atv~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tG--k~l~Tl~vl~gh~~p~~GH~~~V 2274 (2389)
.|+..++...+.++ .++++ +-.|..++..-+|+.|+|+|.|.||++|+...+ .|+.|++ -|.++|
T Consensus 51 ~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir----------~H~DYV 120 (735)
T KOG0308|consen 51 LWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR----------THKDYV 120 (735)
T ss_pred EeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh----------cccchh
Confidence 45555555544333 22222 123466788888999999999999999999877 6888885 278999
Q ss_pred EEEEE-CCCCCEEEEEeCCCcEEEeeCCCCCc-----cCcccceeee-ecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2275 SALQF-DHYGHRFASAALDGTVCTWQLEVGGR-----SNVRPMESCL-CFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2275 ~sVaF-SPDG~~LASgS~DgTVkLWDl~tggr-----s~~k~l~tl~-gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
.++++ -++...+|||+.|+.|.|||+++|.. .+..+..++. ||-..|+++|-++ .|..|++|| -.+-+|
T Consensus 121 kcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGg---tek~lr 196 (735)
T KOG0308|consen 121 KCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGG---TEKDLR 196 (735)
T ss_pred eeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecC---cccceE
Confidence 99999 89999999999999999999998721 1222333444 8899999999999 999999874 678999
Q ss_pred EeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2348 VWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2348 LWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+||. .+.+.+..|+||+..|+++-.+.+|+++||.
T Consensus 197 ~wDp--rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~ 231 (735)
T KOG0308|consen 197 LWDP--RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA 231 (735)
T ss_pred Eecc--ccccceeeeeccccceEEEEEcCCCCeEeec
Confidence 9997 3666789999999999999999999998874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-13 Score=156.88 Aligned_cols=148 Identities=18% Similarity=0.267 Sum_probs=120.7
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|..+.|||...+|+|||.|+||||+|+.+....+.++++.+ ...|+++.|.|.|.+|+.|.+-.++||+|+
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--------~~~vrsiSfHPsGefllvgTdHp~~rlYdv 245 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--------TEPVRSISFHPSGEFLLVGTDHPTLRLYDV 245 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--------cceeeeEeecCCCceEEEecCCCceeEEec
Confidence 457789999999999999999999999986655555544332 256999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecC-cEEEEeecccc
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEG-LYDLFLPLKLL 2378 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~-~V~svA~~~~~ 2378 (2389)
+|.. +-.+--.-.+|++.|.+|.|++ +|++.+|| |.||.|||||-. .++|+.++ ..|.+ .|.+.-+.+.|
T Consensus 246 ~T~Q--cfvsanPd~qht~ai~~V~Ys~-t~~lYvTa---SkDG~IklwDGV--S~rCv~t~~~AH~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 246 NTYQ--CFVSANPDDQHTGAITQVRYSS-TGSLYVTA---SKDGAIKLWDGV--SNRCVRTIGNAHGGSEVCSAVFTKNG 317 (430)
T ss_pred ccee--EeeecCcccccccceeEEEecC-CccEEEEe---ccCCcEEeeccc--cHHHHHHHHhhcCCceeeeEEEccCC
Confidence 9962 1111123467999999999999 99999997 799999999964 57898888 44654 46678889999
Q ss_pred hhhhcc
Q 000080 2379 NFALSK 2384 (2389)
Q Consensus 2379 ~~~~s~ 2384 (2389)
+++||.
T Consensus 318 kyiLsS 323 (430)
T KOG0640|consen 318 KYILSS 323 (430)
T ss_pred eEEeec
Confidence 999984
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=154.47 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=129.8
Q ss_pred cceeeccccccccccccccCCCCcC--------ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEec-------
Q 000080 2194 IGASALGWETQDDFEDYVDPPATVE--------NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYG------- 2258 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~~atv~--------ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~------- 2258 (2389)
..+++ +-|-+.++|.+......+. --+|-+|+..++|..++|||.|.+|+||+..+... .++.
T Consensus 161 ~fvsa-s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rr 238 (423)
T KOG0313|consen 161 LFVSA-SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRR 238 (423)
T ss_pred eEEEe-cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhh
Confidence 45666 7777888887753322211 12568889999999999999999999999432110 0110
Q ss_pred ------ccCCCC---CCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC
Q 000080 2259 ------VLPAAN---VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS 2329 (2389)
Q Consensus 2259 ------vl~gh~---~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~ 2329 (2389)
...+.+ +...||...|.+|.|++ ...+-|+|.|.|||.||+++|+ ...++.+ .+..++|+++|
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~-----~~~~~~~-~ksl~~i~~~~- 310 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG-----LKSTLTT-NKSLNCISYSP- 310 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc-----ceeeeec-CcceeEeeccc-
Confidence 000011 12458899999999999 6689999999999999999985 2333332 46788999999
Q ss_pred CCCEEEEeecCCCCCeEEEeeCCCCCCCc-eEEEEeecCcEEEEeecccchhhh
Q 000080 2330 SGSVIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2330 DGslLASAG~sS~D~TVrLWD~l~~tg~~-v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
...+||+| |.|+.|||||.....+.. .++|.||.++|.++.-+|.--|.|
T Consensus 311 ~~~Ll~~g---ssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~ 361 (423)
T KOG0313|consen 311 LSKLLASG---SSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL 361 (423)
T ss_pred ccceeeec---CCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence 88999986 689999999997665555 489999999999999888766544
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=157.48 Aligned_cols=145 Identities=16% Similarity=0.266 Sum_probs=118.2
Q ss_pred eEEEEEEcCC-CCeEEEEeCCCcEEEeecCCCc--eeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEE
Q 000080 2221 STRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVC 2296 (2389)
Q Consensus 2221 ~VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk--~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVk 2296 (2389)
.|..|+|||- ..+++|.++|+.+.|||+++++ +..+- .+|.+.|.+|+|+|-+ ..|||||.|+||+
T Consensus 229 ~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~----------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~ 298 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV----------KAHSAEVNCVAFNPFNEFILATGSADKTVA 298 (422)
T ss_pred ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc----------cccCCceeEEEeCCCCCceEEeccCCCcEE
Confidence 4577899996 4489999999999999999642 22221 3578999999999975 7999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCC------------CceEEEEe
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT------------SSRASITC 2364 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg------------~~v~sL~G 2364 (2389)
|||++.-. +++.++.+|...|..|.|||+..++|||+| .|+.+.+||+..-.. +.+-.--|
T Consensus 299 LwDlRnL~----~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 299 LWDLRNLN----KPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG 371 (422)
T ss_pred Eeechhcc----cCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence 99999752 688999999999999999999889999974 899999999832111 12345578
Q ss_pred ecCcEEEEeecccchhhh
Q 000080 2365 HEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2365 H~~~V~svA~~~~~~~~~ 2382 (2389)
|+..|..++-.|.-.|.+
T Consensus 372 H~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred cccccccccCCCCCCeEE
Confidence 999999999888877754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-13 Score=157.76 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=109.3
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|..|.|+ .++|+|+|.|.|||+|++.++.+++|+. ||...|.++++ .|++++|||.|+||||||+
T Consensus 322 aVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~----------gHkRGIAClQY--r~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 322 AVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN----------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred heeeeccc--cceEEEecCCceEEEEeccceeeehhhh----------cccccceehhc--cCeEEEecCCCceEEEEec
Confidence 44566775 4599999999999999999999999983 56677777766 6899999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCC-------CceEEEEeecCcEEEEe
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT-------SSRASITCHEGLYDLFL 2373 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg-------~~v~sL~GH~~~V~svA 2373 (2389)
+.| .+++-++||+.-|++|.|.. +.|+||| -||+||+||+..+-. -|+.++.-|++.|--+-
T Consensus 388 ~~G-----~cLRvLeGHEeLvRciRFd~---krIVSGa---YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 388 ECG-----ACLRVLEGHEELVRCIRFDN---KRIVSGA---YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred ccc-----HHHHHHhchHHhhhheeecC---ceeeecc---ccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 997 57888999999999999986 8899964 899999999843222 26788888999998776
Q ss_pred ecc
Q 000080 2374 PLK 2376 (2389)
Q Consensus 2374 ~~~ 2376 (2389)
|.+
T Consensus 457 FD~ 459 (499)
T KOG0281|consen 457 FDE 459 (499)
T ss_pred ecc
Confidence 643
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=149.67 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=129.3
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWD 2299 (2389)
.|++|+|+-+|..||+||.|+++++|++..++.+..+. . -||.+.|-+++++|.. ..||+++.|.+|++||
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~---~-----~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV---Y-----RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhc---c-----cCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45889999999999999999999999998886655442 1 2677999999999764 8999999999999999
Q ss_pred CCCCCc--------------------------------------------------------------------------
Q 000080 2300 LEVGGR-------------------------------------------------------------------------- 2305 (2389)
Q Consensus 2300 l~tggr-------------------------------------------------------------------------- 2305 (2389)
++++..
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 988632
Q ss_pred ---cCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2306 ---SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2306 ---s~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
-.++|++++.+|+..+.+|.|+| +|+++|+| |.|..|-|||+ ..--|++++.-|+-+|+.|+|+-+|+.+-
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p-~GryfA~G---sADAlvSLWD~--~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATG---SADALVSLWDV--DELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EeccccccccccccCCcceEEEEECC-CCceEeec---cccceeeccCh--hHhhhheeeccccCceEEEEeccCcceee
Confidence 13578899999999999999999 99999996 69999999998 33457899999999999999999999876
Q ss_pred cc
Q 000080 2383 SK 2384 (2389)
Q Consensus 2383 s~ 2384 (2389)
|.
T Consensus 248 Sa 249 (313)
T KOG1407|consen 248 SA 249 (313)
T ss_pred cc
Confidence 64
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.6e-13 Score=156.77 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=108.9
Q ss_pred eEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLW 2298 (2389)
+|-.++|+| +.+.|||||+|.+|++|++-.+...+.+.. |. .-..||...|--|++.|-. +.|+|++.|++|.+|
T Consensus 83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte-pv--v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE-PV--VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccCccCCceeecCCCCceEEEEECCCcccccCccc-ce--EEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 457779999 566899999999999999987665544320 00 1134788999999999996 899999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcE
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLY 2369 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V 2369 (2389)
|+.||. .+.++. |..-|+++.|+. ||++|+|+ +.|+.|||||. .+++.++.-.+|++.-
T Consensus 160 nv~tge-----ali~l~-hpd~i~S~sfn~-dGs~l~Tt---ckDKkvRv~dp--r~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 160 NVGTGE-----ALITLD-HPDMVYSMSFNR-DGSLLCTT---CKDKKVRVIDP--RRGTVVSEGVAHEGAK 218 (472)
T ss_pred eccCCc-----eeeecC-CCCeEEEEEecc-CCceeeee---cccceeEEEcC--CCCcEeeecccccCCC
Confidence 999983 455665 999999999999 99999996 69999999997 4566677778888643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=147.68 Aligned_cols=178 Identities=20% Similarity=0.294 Sum_probs=121.8
Q ss_pred eee-eccCCCCCeeEEEEcCCCCCCCcEE-EecCCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecC--CCCeE
Q 000080 86 QVF-ALSDNSLPVTSISWSPETPSIGQLA-AASENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTG--SGDGI 160 (2389)
Q Consensus 86 Qvi-egh~d~~dVk~VaWSPd~~~~GeIa-ASyDntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSp--dG~rL 160 (2389)
|.| .+|.| -|-.+.--=. +..|| ||+|++||||.-.+ +-+=...++|+ |++.||.++|-- -|..|
T Consensus 4 q~idt~H~D--~IHda~lDyy---gkrlATcsSD~tVkIf~v~~-----n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iL 73 (299)
T KOG1332|consen 4 QTIDTQHED--MIHDAQLDYY---GKRLATCSSDGTVKIFEVRN-----NGQSKLLAELTGHSGPVWKVAWAHPKFGTIL 73 (299)
T ss_pred eehhhhhhh--hhhHhhhhhh---cceeeeecCCccEEEEEEcC-----CCCceeeeEecCCCCCeeEEeecccccCcEe
Confidence 444 44555 3333333332 45677 57899999998652 11224466776 899999999998 99999
Q ss_pred EEEecc--eEEeeccCCcEEEEEEeeccccceEEEEeecCC--Cc-eEeeecccccccCCCCCCCceeEEEeeCCCccce
Q 000080 161 VAGGME--TVLWKKKNTLWEIAWKFKENYPQNLVSATWSIE--GP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYI 235 (2389)
Q Consensus 161 aSggdD--V~IW~~~~s~Wecvwt~~~~~~~~ivsvaWSpd--G~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~ 235 (2389)
|||+.| |-||+..++.|...... ..|..++-+|+|-|. |. +|.++.|.+ -+|+.+..++.-.-.
T Consensus 74 AScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~----------vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 74 ASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGK----------VSVLTYDSSGGWTTS 142 (299)
T ss_pred eEeecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCCCc----------EEEEEEcCCCCccch
Confidence 999998 88999999999876542 345556668899996 55 888888765 234433333333334
Q ss_pred eecccCCCCeeEEEeccCCCC---CCCCCCccccCceEEeeecCCeEEEEEeec
Q 000080 236 KLELCHPQPVSMVQWRPSTRR---HSPGDTKRSQRHVLLTCCLDGTVRLWCEMD 286 (2389)
Q Consensus 236 ~ve~aH~qdVn~V~W~Ps~~~---~~~~Dgk~~~~nILAScSdDgTVRLW~e~d 286 (2389)
....||+.-||+|+|.|.+.- ...+-.. .-..|||++-|++||||+++.
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~--~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAA--KVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCccc--ccceeeccCCccceeeeecCC
Confidence 467999999999999995321 1111111 123499999999999999875
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-12 Score=148.82 Aligned_cols=154 Identities=18% Similarity=0.323 Sum_probs=124.4
Q ss_pred cccceeeccccccccccccccCCCCc------CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPPATV------ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~atv------~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
..|+||| +.|.+.++-+|.++.+.. +--.||+|+|||.|.+|+.|.+--++||+|+.+-+|...-.
T Consensus 184 e~ILiS~-srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan------- 255 (430)
T KOG0640|consen 184 ETILISG-SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN------- 255 (430)
T ss_pred hheEEec-cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-------
Confidence 3478899 889999999997554331 11256999999999999999999999999999988865432
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceee-eecC-CCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC-LCFS-SHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl-~gHs-~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
|.-+|++.|++|.+|+.|+..++||-||.|||||=-++ +++.++ ..|. ..|.+..|.. +|++|.|+| .|
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-----rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG---~D 326 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-----RCVRTIGNAHGGSEVCSAVFTK-NGKYILSSG---KD 326 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccH-----HHHHHHHhhcCCceeeeEEEcc-CCeEEeecC---Cc
Confidence 55679999999999999999999999999999997654 345443 2355 4567888998 999999975 89
Q ss_pred CeEEEeeCCCCCCCceEEEEe
Q 000080 2344 INVVVWDTLAPPTSSRASITC 2364 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~G 2364 (2389)
.+|+||.+ .++.+++...|
T Consensus 327 S~vkLWEi--~t~R~l~~YtG 345 (430)
T KOG0640|consen 327 STVKLWEI--STGRMLKEYTG 345 (430)
T ss_pred ceeeeeee--cCCceEEEEec
Confidence 99999998 67788776655
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=145.59 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=134.3
Q ss_pred cccccccccccc--cCCCC--cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEE
Q 000080 2200 GWETQDDFEDYV--DPPAT--VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS 2275 (2389)
Q Consensus 2200 ~~d~~~~~~~~~--d~~at--v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~ 2275 (2389)
|-|.+.|+|.-. ..+.| -++-.|..++.+.|..-++||+.|..|.+||+.+|+.++.|+ ||.+.|.
T Consensus 36 GsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r----------gH~aqVN 105 (307)
T KOG0316|consen 36 GSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR----------GHLAQVN 105 (307)
T ss_pred CCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc----------cccceee
Confidence 678899999642 11111 122477999999999999999999999999999999999986 5789999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCC
Q 000080 2276 ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP 2355 (2389)
Q Consensus 2276 sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~t 2355 (2389)
+|+|+.+...++|||-|.++|+||.++. ..+|++.+......|.+|...- ..|++| |-|||+|.+|+. .
T Consensus 106 tV~fNeesSVv~SgsfD~s~r~wDCRS~---s~ePiQildea~D~V~Si~v~~---heIvaG---S~DGtvRtydiR--~ 174 (307)
T KOG0316|consen 106 TVRFNEESSVVASGSFDSSVRLWDCRSR---SFEPIQILDEAKDGVSSIDVAE---HEIVAG---SVDGTVRTYDIR--K 174 (307)
T ss_pred EEEecCcceEEEeccccceeEEEEcccC---CCCccchhhhhcCceeEEEecc---cEEEee---ccCCcEEEEEee--c
Confidence 9999999999999999999999999974 3478888888889999998875 667654 799999999984 3
Q ss_pred CCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2356 TSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2356 g~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|+..--..||+ |+|+.++++||+.|-.|
T Consensus 175 G~l~sDy~g~p--it~vs~s~d~nc~La~~ 202 (307)
T KOG0316|consen 175 GTLSSDYFGHP--ITSVSFSKDGNCSLASS 202 (307)
T ss_pred ceeehhhcCCc--ceeEEecCCCCEEEEee
Confidence 44444456666 99999999999987544
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-12 Score=150.22 Aligned_cols=163 Identities=14% Similarity=0.160 Sum_probs=125.8
Q ss_pred ccccccccccccc--CCCCcC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEE
Q 000080 2200 GWETQDDFEDYVD--PPATVE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS 2275 (2389)
Q Consensus 2200 ~~d~~~~~~~~~d--~~atv~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~ 2275 (2389)
+-|..+++|..-. .++.+. .-+|+.+..||+|.||+++|.|+++-+-|+++|+++.... +. +..-.++
T Consensus 280 Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs---~~-----~s~v~~t 351 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS---DE-----TSDVEYT 351 (506)
T ss_pred CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe---ec-----cccceeE
Confidence 4455566665421 111111 2367999999999999999999999999999999876542 10 1123589
Q ss_pred EEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCC
Q 000080 2276 ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP 2355 (2389)
Q Consensus 2276 sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~t 2355 (2389)
+.+|.|||..|++|..||.||+||+..+ .....+.||++.|.+|+|+- +|-+||++ ++|+.|++||+. .
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~-----~~~a~Fpght~~vk~i~FsE-NGY~Lat~---add~~V~lwDLR--K 420 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQ-----TNVAKFPGHTGPVKAISFSE-NGYWLATA---ADDGSVKLWDLR--K 420 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCc-----cccccCCCCCCceeEEEecc-CceEEEEE---ecCCeEEEEEeh--h
Confidence 9999999999999999999999999975 24667889999999999998 99999997 589999999984 2
Q ss_pred CCceEEEEeec-CcEEEEeecccchhh
Q 000080 2356 TSSRASITCHE-GLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2356 g~~v~sL~GH~-~~V~svA~~~~~~~~ 2381 (2389)
-+..++++--+ .+|.++.+...|.+.
T Consensus 421 l~n~kt~~l~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 421 LKNFKTIQLDEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred hcccceeeccccccceeEEEcCCCCeE
Confidence 33466665443 268888888888764
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=154.74 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=117.8
Q ss_pred EEEEcCCCC-eEEEEeCCCcEEEeecCCCcee-eEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeC
Q 000080 2224 AFSSHPLRP-FFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2224 sVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l-~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl 2300 (2389)
+++|++..+ .|+|||+|++|.+||+...... .+... .. -..||.+.|..|+|+|-- +.|+|+++|+.+.|||+
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p-~~---~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDP-KT---IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccc-eE---EeecCCcceehhhccccchhhheeecCCCeEEEEEc
Confidence 358888776 6999999999999999754331 11100 00 124788999999999875 89999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+++ . .++..+..+|++.|++++|+|-++.+|||| |.|+||+|||+.. =.++++++++|...|.+|-.+|.-.-
T Consensus 258 R~~-~--~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~---S~D~tV~LwDlRn-L~~~lh~~e~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 258 RSN-T--SKPSHSVKAHSAEVNCVAFNPFNEFILATG---SADKTVALWDLRN-LNKPLHTFEGHEDEVFQVEWSPHNET 330 (422)
T ss_pred CCC-C--CCCcccccccCCceeEEEeCCCCCceEEec---cCCCcEEEeechh-cccCceeccCCCcceEEEEeCCCCCc
Confidence 974 1 267778889999999999999999999996 6899999999852 23579999999999999988876554
Q ss_pred hh
Q 000080 2381 AL 2382 (2389)
Q Consensus 2381 ~~ 2382 (2389)
+|
T Consensus 331 vL 332 (422)
T KOG0264|consen 331 VL 332 (422)
T ss_pred ee
Confidence 43
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-12 Score=147.93 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=127.1
Q ss_pred cceeeccccccccccccc--cCCCCcCc-eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceee-EecccCCCCCCCCC
Q 000080 2194 IGASALGWETQDDFEDYV--DPPATVEN-ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATA-TYGVLPAANVPPPY 2269 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~--d~~atv~n-i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~-Tl~vl~gh~~p~~G 2269 (2389)
.+|++ ..|-+.++|+.+ |..-+.+. --|++++|+.|.++|++|+.+.-+|++|+.+.++.. .+ .|
T Consensus 73 ~aasa-aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~----------~g 141 (334)
T KOG0278|consen 73 RAASA-AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI----------SG 141 (334)
T ss_pred hhhhh-cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh----------cC
Confidence 34555 556666666654 33333322 127999999999999999999999999998777533 23 36
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEe
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLW 2349 (2389)
|.+.|+.+-|-.-.+.|.|.+.|+||||||.++|. .+.+++ ...+|.++-+++ ||++|.++ ..++|+.|
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----~v~sL~-~~s~VtSlEvs~-dG~ilTia----~gssV~Fw 210 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----EVQSLE-FNSPVTSLEVSQ-DGRILTIA----YGSSVKFW 210 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----EEEEEe-cCCCCcceeecc-CCCEEEEe----cCceeEEe
Confidence 78999999999999999999999999999999983 455553 677899999999 99988775 67889999
Q ss_pred eCC---------------------------------------CCCCCceEEE-EeecCcEEEEeecccch
Q 000080 2350 DTL---------------------------------------APPTSSRASI-TCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2350 D~l---------------------------------------~~tg~~v~sL-~GH~~~V~svA~~~~~~ 2379 (2389)
|.. ..++..+.++ .||.++|.||.++|+|.
T Consensus 211 daksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 211 DAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred ccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence 950 1244455555 88999999999999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-12 Score=151.77 Aligned_cols=142 Identities=19% Similarity=0.303 Sum_probs=112.5
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
|.+.+.+|||||-++++|+.|+.||+||+..+..+..| |||++.|.+|+|+-+|-+||++++|+.|+|||
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F----------pght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF----------PGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC----------CCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 56789999999999999999999999999888866655 46889999999999999999999999999999
Q ss_pred CCCCCccCcccceeeeecC-CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2300 LEVGGRSNVRPMESCLCFS-SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs-~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
++.- +.+.+++--. ..|.++.|.+ +|++|+.+| .|=+|.+.+-...+-+++..+.-|.+..++|.+-+.-
T Consensus 418 LRKl-----~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g---~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 418 LRKL-----KNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAG---SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred ehhh-----cccceeeccccccceeEEEcC-CCCeEEeec---ceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 9864 3344443222 3699999999 999999874 5555555553223445678888899888888876654
Q ss_pred hh
Q 000080 2379 NF 2380 (2389)
Q Consensus 2379 ~~ 2380 (2389)
.+
T Consensus 489 q~ 490 (506)
T KOG0289|consen 489 QY 490 (506)
T ss_pred eE
Confidence 43
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.6e-11 Score=136.79 Aligned_cols=248 Identities=17% Similarity=0.311 Sum_probs=169.0
Q ss_pred CCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE--ecCCeEEEEeeC
Q 000080 49 DFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA--ASENCIFVFAHD 126 (2389)
Q Consensus 49 D~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA--SyDntIRVw~~d 126 (2389)
|+-|-...++++.-.|=|..+.++..++++. ..-..|+ ..|+.|.|-| |.-|+++| |||.||+||+++
T Consensus 22 D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T------s~Wrah~--~Si~rV~WAh--PEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 22 DFYGRRMATCSSDQTVKIWDSTSDSGTWSCT------SSWRAHD--GSIWRVVWAH--PEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred cccCceeeeccCCCcEEEEeccCCCCceEEe------eeEEecC--CcEEEEEecC--ccccceEEEEecCCceeeeeec
Confidence 5558434455555556666666788888877 5555554 3799999977 66899986 689999999985
Q ss_pred CCCC-CCCccceeeEEecc-cceEEEEeecCC--CCeEEEEecc--eEEeeccC----CcEEEEEEee------ccccce
Q 000080 127 SASS-KGSFCWSQNAILVQ-GTKVEAIEWTGS--GDGIVAGGME--TVLWKKKN----TLWEIAWKFK------ENYPQN 190 (2389)
Q Consensus 127 ~~~~-kgd~~W~~~~tL~h-ssTV~sIAWSpd--G~rLaSggdD--V~IW~~~~----s~Wecvwt~~------~~~~~~ 190 (2389)
.... ...-+|....+|.. .+.|.+|.|.|. |-.||+|+-| ++|++..+ +.|...-.++ +.+.++
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 2111 11247999999975 669999999997 6688899887 99999543 4565443332 235567
Q ss_pred EEEEeecCCC---c-eEeeecccccccCCCCCCCceeEEEeeCCCc-cceee--cccCCCCeeEEEeccCCCCCCCCCCc
Q 000080 191 LVSATWSIEG---P-SATAASMSQLDLLGPKEAGKCVFICCSDGKS-EYIKL--ELCHPQPVSMVQWRPSTRRHSPGDTK 263 (2389)
Q Consensus 191 ivsvaWSpdG---~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~-~~~~v--e~aH~qdVn~V~W~Ps~~~~~~~Dgk 263 (2389)
-.|++|+|.- + ||.++.. .++.-+.|.|++++... .+..+ ...|+.+|..++|.|.- +
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e-------~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~--------G 236 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDE-------DAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI--------G 236 (361)
T ss_pred ceEEeeccccccCceEEEEccc-------CCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc--------C
Confidence 8899999853 3 7777664 13444668888876554 34443 36899999999999942 2
Q ss_pred cccCceEEeeecCCeEEEEEeecCC-------------ccc---ccccccCCCCcc--ceeEEEEEEEeecccccCCC
Q 000080 264 RSQRHVLLTCCLDGTVRLWCEMDSG-------------KTR---KVAKDTNDHKTI--RRSFCVGAIIEINQALNGAL 323 (2389)
Q Consensus 264 ~~~~nILAScSdDgTVRLW~e~d~G-------------k~k---k~~~~~~d~~~~--~~sF~vaA~I~~~~~~~~~l 323 (2389)
+ .-++||++|.|| ||||.....- ..+ ++-..-.||+.. ++.|-+-++|=...-..||+
T Consensus 237 r-~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 237 R-SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred C-ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 2 478999999999 9999977311 000 000011257643 78888888877666455554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-12 Score=149.39 Aligned_cols=144 Identities=10% Similarity=0.111 Sum_probs=118.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce---eeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA---TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~---l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL 2297 (2389)
.|+-+.||++|++|||||.|.|.-+|++..... ..|+. ||...|.-|.||||.++|.+++.|..++|
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv----------gh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV----------GHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee----------cccCceEEEEECCCCCeEEecCchHheee
Confidence 459999999999999999999999999876654 45552 57799999999999999999999999999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec-CcEEEEeecc
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-GLYDLFLPLK 2376 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~-~~V~svA~~~ 2376 (2389)
||+.+|.. ...+. .+|...+.+++|.| ||..+++| |.|++|..||+ .|+.+.+-+|-. ..|.++|..+
T Consensus 296 wDv~tgd~---~~~y~-~~~~~S~~sc~W~p-Dg~~~V~G---s~dr~i~~wdl---Dgn~~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 296 WDVDTGDL---RHLYP-SGLGFSVSSCAWCP-DGFRFVTG---SPDRTIIMWDL---DGNILGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred ccCCcchh---hhhcc-cCcCCCcceeEEcc-CCceeEec---CCCCcEEEecC---CcchhhcccccccceeEEEEEcC
Confidence 99999851 22222 33668899999999 99999985 68999999997 455555555543 5588999999
Q ss_pred cchhhhccc
Q 000080 2377 LLNFALSKC 2385 (2389)
Q Consensus 2377 ~~~~~~s~~ 2385 (2389)
||.+.|.-|
T Consensus 365 Dgk~vl~v~ 373 (519)
T KOG0293|consen 365 DGKYVLLVT 373 (519)
T ss_pred CCcEEEEEe
Confidence 999988765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-09 Score=135.07 Aligned_cols=603 Identities=16% Similarity=0.217 Sum_probs=322.8
Q ss_pred ccccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCC
Q 000080 31 EFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIG 110 (2389)
Q Consensus 31 ~~ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~G 110 (2389)
+.+--.+.|.++..+|.|- | -+|||++..|++.. |... .....++||.. +|.|+.|=|+.....
T Consensus 7 ea~~Vgc~R~~~v~sw~~~--~--~vafGa~~~Iav~d---p~k~-------~i~t~l~GH~a--~VnC~~~l~~s~~~a 70 (764)
T KOG1063|consen 7 EAISVGCNRVPKVSSWGPG--G--LVAFGAGPAIAVAD---PEKI-------LIVTTLDGHVA--RVNCVHWLPTSEIVA 70 (764)
T ss_pred eeeeecccccccccccccc--c--eEEecCCceEEEeC---cccc-------eeEEeccCCcc--ceEEEEEcccccccc
Confidence 3445566799999999653 4 79999999999887 2222 12255688876 999999999711111
Q ss_pred cEEE-ecCCeEEEEeeCCCCCCCCccceeeEEecccceEEEEeecCCCCeEEE-Eecc-eEEeeccCCcEEEEEEeeccc
Q 000080 111 QLAA-ASENCIFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVA-GGME-TVLWKKKNTLWEIAWKFKENY 187 (2389)
Q Consensus 111 eIaA-SyDntIRVw~~d~~~~kgd~~W~~~~tL~hssTV~sIAWSpdG~rLaS-ggdD-V~IW~~~~s~Wecvwt~~~~~ 187 (2389)
++++ +.|+.|++|+-. +..|.|..++.+ -.+..++.+.--..+.+ ++++ +.+|+.....--|.-.+.-+-
T Consensus 71 ~~vsG~sD~~v~lW~l~------~~~~~~i~~~~g-~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~ 143 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLR------DEYLIKIYTIQG-HCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEI 143 (764)
T ss_pred eEEEccCCCcEEEEEEe------ehheEEEEeecC-cceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhh
Confidence 4665 468999999875 336999999987 55566666664444444 4555 889998555433322222111
Q ss_pred cceEE--EEeecC-CCceEeeec-ccccccCCCCCCCceeEEEeeCCCccceee--cccCCCCeeEEEeccCCCCCCCCC
Q 000080 188 PQNLV--SATWSI-EGPSATAAS-MSQLDLLGPKEAGKCVFICCSDGKSEYIKL--ELCHPQPVSMVQWRPSTRRHSPGD 261 (2389)
Q Consensus 188 ~~~iv--svaWSp-dG~fATag~-dikf~~~~~~~~~kpV~V~~~dg~~~~~~v--e~aH~qdVn~V~W~Ps~~~~~~~D 261 (2389)
.. ++ |.+-.| .|.++.+++ ..+ +...+.++...|..+ ..+|..-|.+++|+-.+ +
T Consensus 144 k~-~ipLcL~~~~~~~~~lla~Ggs~~------------~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~-----~- 204 (764)
T KOG1063|consen 144 KE-AIPLCLAALKNNKTFLLACGGSKF------------VVDLYSSSADSFARVAELEGHTDWIRSLAFARLG-----G- 204 (764)
T ss_pred hh-HhhHHHhhhccCCcEEEEecCcce------------EEEEeccCCcceeEEEEeeccchhhhhhhhhccC-----C-
Confidence 11 22 444455 566555544 322 111222222234443 47899999999998742 1
Q ss_pred CccccCceEEeeecCCeEEEEEeecCCccccccccc-----CCCCccceeEEEEEEEeecccccCCCCCCeEEEeecccc
Q 000080 262 TKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDT-----NDHKTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIR 336 (2389)
Q Consensus 262 gk~~~~nILAScSdDgTVRLW~e~d~Gk~kk~~~~~-----~d~~~~~~sF~vaA~I~~~~~~~~~l~~~~~v~W~~~~~ 336 (2389)
..-+|||||.|.+||||++...+..++.-... .+.+.--+-+++---|+..+.+-|-=.==..|+|=....
T Consensus 205 ----~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 205 ----DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ----CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 24579999999999999999877654311110 011111111122222222242223223335677777776
Q ss_pred ceeeccCCccceecccccccccceeeeee----EeecCCccceeEEEeeeccCCCCCcCeEEEeeeccccccCCCCCCCC
Q 000080 337 CMFETGEGANHFISTGVYEHGGTGKCEWL----VGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNLELEHPHNSGFS 412 (2389)
Q Consensus 337 ~vf~~~~e~~~~~~s~~~~~~~v~~~eW~----~~~~PGs~l~~W~v~~LDd~~~~R~prVt~~~r~~~~~~~~~~a~f~ 412 (2389)
.+-+.+++++-.+=-++- ++| =|. +|.--|+-+-||..+|--+
T Consensus 281 ~LLSASaDksmiiW~pd~---~tG--iWv~~vRlGe~gg~a~GF~g~lw~~n---------------------------- 327 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDE---NTG--IWVDVVRLGEVGGSAGGFWGGLWSPN---------------------------- 327 (764)
T ss_pred hheecccCcceEEEecCC---ccc--eEEEEEEeecccccccceeeEEEcCC----------------------------
Confidence 666666555422211110 000 021 1111144444555554332
Q ss_pred CCcCccccceeEEeccccCCCCcccccccccccCcceeehhcccCCCCccccccCCCC-c-cceeeecccceeeeccccc
Q 000080 413 GFQGQSLLNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSS-T-GQILSCSASRILSIEGHTG 490 (2389)
Q Consensus 413 ~~~da~~l~~~vi~r~~~~g~p~~cs~~~l~~~N~~~~~~~h~~~sln~~~~s~~~~s-f-~~i~s~~~s~~~~~~GH~~ 490 (2389)
.++|+-+ ---|.+-+|- ++++ | ..-..+ -||..
T Consensus 328 ---------~~~ii~~-------------------------g~~Gg~hlWk---t~d~~~w~~~~~i--------SGH~~ 362 (764)
T KOG1063|consen 328 ---------SNVIIAH-------------------------GRTGGFHLWK---TKDKTFWTQEPVI--------SGHVD 362 (764)
T ss_pred ---------CCEEEEe-------------------------cccCcEEEEe---ccCccceeecccc--------ccccc
Confidence 0222211 1223334454 2332 1 222223 79999
Q ss_pred eEeEEeeeccccchhhhhccCCCccEEEEEecccccccCCCCCCCCccccccc------ccccccc-CCccceeeecccc
Q 000080 491 KILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGK------LRTRKSC-SNYTSLRWAPSLL 563 (2389)
Q Consensus 491 ~i~qv~~Hp~l~~l~Lt~S~d~~~~LilW~vspv~~~~~~~~~~~P~l~~~Gg------lar~~s~-~~ftsl~W~Psil 563 (2389)
-+.+|.-||.= |.+|++|+|--.-|. .| | |+ +||--.- -.-+||+-++.
T Consensus 363 ~V~dv~W~psG-eflLsvs~DQTTRlF-----------------a~-w---g~q~~wHEiaRPQiHGyDl~c~~~vn~-- 418 (764)
T KOG1063|consen 363 GVKDVDWDPSG-EFLLSVSLDQTTRLF-----------------AR-W---GRQQEWHEIARPQIHGYDLTCLSFVNE-- 418 (764)
T ss_pred cceeeeecCCC-CEEEEeccccceeee-----------------cc-c---ccccceeeecccccccccceeeehccC--
Confidence 99999999999 999999999764332 33 4 43 5554333 55566665554
Q ss_pred ccceEEEEeecCCeeEEEEeccccCCCCe--EeeeeEEEeccCCCCCCCCCceeeeecCCccCCcccccceEEEEEEeec
Q 000080 564 DEDMVLLMGHVGGIDCFIVKISQTEVDDI--VCHYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLK 641 (2389)
Q Consensus 564 ~~~~~~fva~~gg~d~~l~~i~~~~~eni--t~~~~c~i~l~~~~~~~~~~~~ih~~p~~~~~~~tf~~n~f~lv~v~~~ 641 (2389)
..-|| +|+|.=+.+...--+ ++ ++...|-+.+-+.+.+.++- +.|.=-.=+|.|..
T Consensus 419 ---~~~FV---SgAdEKVlRvF~aPk-~fv~~l~~i~g~~~~~~~~~p~gA----~VpaLGLSnKa~~~----------- 476 (764)
T KOG1063|consen 419 ---DLQFV---SGADEKVLRVFEAPK-SFVKSLMAICGKCFKGSDELPDGA----NVPALGLSNKAFFP----------- 476 (764)
T ss_pred ---Cceee---ecccceeeeeecCcH-HHHHHHHHHhCccccCchhccccc----ccccccccCCCCcc-----------
Confidence 33343 344443444331111 11 22222322232222222220 00100011111110
Q ss_pred ccceeEEEEEEeeecCCcccccCCCCCCccccccCCcccccccceeeeeeccccCcCCCCCCcccccEEEEeecCCCcCC
Q 000080 642 GLESLSWEITFHSFDLSESCCGCIDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPM 721 (2389)
Q Consensus 642 ~f~~l~W~v~l~s~~~~~~~~~c~~~~~~~~~~~~~~~~s~a~k~~~l~~~~cs~~~P~~~l~~~v~s~~~v~p~~~~~~ 721 (2389)
.+++ ... + +- +|-+.-| .... ++.-.| |+
T Consensus 477 ---------------~e~~---------------~G~---~-~~-------~~~et~~----~~~p--~~L~eP----P~ 505 (764)
T KOG1063|consen 477 ---------------GETN---------------TGG---E-AA-------VCAETPL----AAAP--CELTEP----PT 505 (764)
T ss_pred ---------------cccc---------------ccc---c-cc-------eeeeccc----ccCc--hhccCC----Ch
Confidence 0000 000 0 00 1211111 0000 000012 11
Q ss_pred CccccCCCCCCCCCCCeEEEEeecCCcEEEEEEEeCCCCCCceeeeeeeeeecCCCCceEEEeecCCCeEEEEccCCCCC
Q 000080 722 QQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSN 801 (2389)
Q Consensus 722 ~~~l~s~~~~~~~~~pYliaT~CSDG~VRfWkc~v~~~~~~~y~We~w~ml~~~~G~p~~IS~a~tGR~a~a~~~~~~~~ 801 (2389)
..||- ..-.|.|..-+-.|+=.+.++.++++|-++|..|+.++ .
T Consensus 506 EdqLq-----------------------------------~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~-~ 549 (764)
T KOG1063|consen 506 EDQLQ-----------------------------------QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL-K 549 (764)
T ss_pred HHHHH-----------------------------------HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC-c
Confidence 11111 24569999888889989999999999999988887433 3
Q ss_pred CccEEEEEeeccccCcceeEeeceeccCC-ceEEEEeEEccCCcEEEEEeecceEEEEEeccCCcccccccccccccccc
Q 000080 802 AVSNVRIWESVCVTELGSFVLEDTLSFDT-NIVAVNWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNW 880 (2389)
Q Consensus 802 ~~s~vsIWD~~~~sgGGswvLE~ti~ld~-~IVdLDWtStEDGqhILTVGfg~kVlLYtQlRydytn~~~~~~ll~~~~w 880 (2389)
.-.-+-+|+. +.|.--+.+.++. .|-+|. ..+||..+|+|+=-+.+=||.+.+-+--. .+.
T Consensus 550 ehAvI~lw~t------~~W~~~~~L~~HsLTVT~l~--FSpdg~~LLsvsRDRt~sl~~~~~~~~~e----------~~f 611 (764)
T KOG1063|consen 550 EHAVIRLWNT------ANWLQVQELEGHSLTVTRLA--FSPDGRYLLSVSRDRTVSLYEVQEDIKDE----------FRF 611 (764)
T ss_pred cceEEEEEec------cchhhhheecccceEEEEEE--ECCCCcEEEEeecCceEEeeeeecccchh----------hhh
Confidence 3455999996 2588777777764 777994 57999999999999999999995543000 001
Q ss_pred eeeccCCCCCccccccccCce-EEEEecCe
Q 000080 881 FCLAFSPTFAAHDFTWGRRAI-AIVVHQSY 909 (2389)
Q Consensus 881 ~~Id~~~T~hIgDssWVRDGI-LVVGmgnE 909 (2389)
.++ ..||--|=|=+|.||+. ++-++-.+
T Consensus 612 a~~-k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 612 ACL-KAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred ccc-cccceEEEEcccCcccceeEEecCCc
Confidence 110 11222266678988887 66665543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=144.85 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=120.6
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
-+|.+|+.||+.+++||||.|-...||++.+|.....+ +||.+.|+++.||.||.+||||+.+|.|++|+
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el----------tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL----------TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe----------cCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 35699999999999999999999999999999966655 46789999999999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
+.+++ ....+.+--..+.=+.++| -+.+|+.| +.|+.|.+|.+ +.+...+.+.||..+++|=-+.|+|.
T Consensus 135 ~stg~-----~~~~~~~e~~dieWl~WHp-~a~illAG---~~DGsvWmw~i--p~~~~~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 135 VSTGG-----EQWKLDQEVEDIEWLKWHP-RAHILLAG---STDGSVWMWQI--PSQALCKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred cccCc-----eEEEeecccCceEEEEecc-cccEEEee---cCCCcEEEEEC--CCcceeeEecCCCCCcccccccCCCc
Confidence 99974 2333332234444478899 88888864 79999999998 45466899999999999999999999
Q ss_pred hhhc
Q 000080 2380 FALS 2383 (2389)
Q Consensus 2380 ~~~s 2383 (2389)
+++.
T Consensus 204 r~~t 207 (399)
T KOG0296|consen 204 RILT 207 (399)
T ss_pred eEEE
Confidence 8764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=155.13 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=119.0
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecC-----CCcee--------eEecccCCCCCCCCCCCCCEEEEEECCCCCEE
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFG-----KDKAT--------ATYGVLPAANVPPPYALASISALQFDHYGHRF 2286 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~-----tGk~l--------~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L 2286 (2389)
..|++++.+||+..+++||.|.||++||+. .|... +++. + .+.|-+|++||||++|
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l----------~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-L----------EDDVLCVSVSPDGKLL 523 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-c----------cccEEEEEEcCCCcEE
Confidence 356999999999999999999999999974 12221 2332 1 2679999999999999
Q ss_pred EEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec
Q 000080 2287 ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2389)
Q Consensus 2287 ASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~ 2366 (2389)
|.+=.|+||+++-+.+- +-+.++-||.-+|.++..|| |+++|+|+ |.|++||||-+ .=|.|-++|-+|+
T Consensus 524 aVsLLdnTVkVyflDtl-----KFflsLYGHkLPV~smDIS~-DSklivTg---SADKnVKiWGL--dFGDCHKS~fAHd 592 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTL-----KFFLSLYGHKLPVLSMDISP-DSKLIVTG---SADKNVKIWGL--DFGDCHKSFFAHD 592 (888)
T ss_pred EEEeccCeEEEEEecce-----eeeeeecccccceeEEeccC-CcCeEEec---cCCCceEEecc--ccchhhhhhhccc
Confidence 99999999999999874 67889999999999999999 99999996 69999999998 4588999999999
Q ss_pred CcEEEEeecccc
Q 000080 2367 GLYDLFLPLKLL 2378 (2389)
Q Consensus 2367 ~~V~svA~~~~~ 2378 (2389)
+.|.+|-+.|+-
T Consensus 593 DSvm~V~F~P~~ 604 (888)
T KOG0306|consen 593 DSVMSVQFLPKT 604 (888)
T ss_pred CceeEEEEcccc
Confidence 999999988864
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=147.21 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=124.8
Q ss_pred eeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCcee-----eEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC
Q 000080 2220 ISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKAT-----ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2389)
Q Consensus 2220 i~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l-----~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg 2293 (2389)
-+|.++.|++++. .||||+.|..||||-+.++..- ..|.. ...+|...|+.|.|+|+|..||||+++|
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s------~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLS------SLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEee------cccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 3568899999988 9999999999999998755421 12210 1346789999999999999999999999
Q ss_pred cEEEeeCC--------CCC---ccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE
Q 000080 2294 TVCTWQLE--------VGG---RSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2389)
Q Consensus 2294 TVkLWDl~--------tgg---rs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL 2362 (2389)
.|-||..+ +.. +..-...+.+.+|...|++++|+| |+..++++ +-|+++++||+ ..|+.++.+
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~---s~dns~~l~Dv--~~G~l~~~~ 161 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSG---SVDNSVRLWDV--HAGQLLAIL 161 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeee---eccceEEEEEe--ccceeEeec
Confidence 99999776 200 000123466888999999999999 99999986 69999999998 567888999
Q ss_pred EeecCcEEEEeecccchhhhcc
Q 000080 2363 TCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2363 ~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.+|.+-|.-+|-.|...++.|+
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred cccccccceeecchhhhhhhhh
Confidence 9999999999999999888775
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-11 Score=144.88 Aligned_cols=298 Identities=15% Similarity=0.181 Sum_probs=187.4
Q ss_pred CCCCCCCCcccccccccccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCccccccc--ccccceeeeeccCC
Q 000080 16 CVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEAL--IGPIFRQVFALSDN 93 (2389)
Q Consensus 16 ~~~~~~~lpl~~~~~~~ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~--~~p~~~Qviegh~d 93 (2389)
.++|+-..|.+- ++-=+.+|+.+.|++.-|. | ..++-|+=+--|-.| +|+-+ .=+.|||+.|--.|
T Consensus 148 e~~~~~~IP~sh---Ei~l~hgtk~Vsal~~Dp~--G-aR~~sGs~Dy~v~~w------Df~gMdas~~~fr~l~P~E~h 215 (641)
T KOG0772|consen 148 EESIIKLIPGSH---EIQLKHGTKIVSALAVDPS--G-ARFVSGSLDYTVKFW------DFQGMDASMRSFRQLQPCETH 215 (641)
T ss_pred hhchhhcCCccc---eEeccCCceEEEEeeecCC--C-ceeeeccccceEEEE------ecccccccchhhhccCccccc
Confidence 445555555543 2223456788888888766 8 578888888888888 44321 12669999988777
Q ss_pred CCCeeEEEEcCCCCCCCcEEE-ecCCeEEEEeeCC----CCCCCC-ccceeeEEecccceEEEEeecCCCC-eEEEEecc
Q 000080 94 SLPVTSISWSPETPSIGQLAA-ASENCIFVFAHDS----ASSKGS-FCWSQNAILVQGTKVEAIEWTGSGD-GIVAGGME 166 (2389)
Q Consensus 94 ~~dVk~VaWSPd~~~~GeIaA-SyDntIRVw~~d~----~~~kgd-~~W~~~~tL~hssTV~sIAWSpdG~-rLaSggdD 166 (2389)
+|.+++|||. ++.|++ |..-.++|+.+|. +..+|+ |--....+-.|...+.+-.|.|..+ ..++||.|
T Consensus 216 --~i~sl~ys~T---g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D 290 (641)
T KOG0772|consen 216 --QINSLQYSVT---GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD 290 (641)
T ss_pred --ccceeeecCC---CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC
Confidence 8999999997 677775 5667899998872 112222 1111122334899999999999987 45699998
Q ss_pred --eEEeeccCC-cEEEEEEeeccccc--eEEEEeecCCCc-eEeeecccccccCCC-CCCCceeEEEeeCCCccceeecc
Q 000080 167 --TVLWKKKNT-LWEIAWKFKENYPQ--NLVSATWSIEGP-SATAASMSQLDLLGP-KEAGKCVFICCSDGKSEYIKLEL 239 (2389)
Q Consensus 167 --V~IW~~~~s-~Wecvwt~~~~~~~--~ivsvaWSpdG~-fATag~dikf~~~~~-~~~~kpV~V~~~dg~~~~~~ve~ 239 (2389)
++||+.++. +-..|.+.++++.- ++-+++|+|||+ ||+++.|..++.|.. +-...| .-++..
T Consensus 291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p-----------~~~vk~ 359 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP-----------VMKVKD 359 (641)
T ss_pred CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc-----------ceEeee
Confidence 999996543 34445444444433 344889999999 999999877666521 111122 235678
Q ss_pred cCCC--CeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeecCCccccccccc-CCCCccceeEEEEEEEeec
Q 000080 240 CHPQ--PVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDT-NDHKTIRRSFCVGAIIEIN 316 (2389)
Q Consensus 240 aH~q--dVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d~Gk~kk~~~~~-~d~~~~~~sF~vaA~I~~~ 316 (2389)
||.. +|.||.+++ ||+. |+|=+.|+|.|+|+..-.-++=+....- +--+++.|-|..=+-+=+-
T Consensus 360 AH~~g~~Itsi~FS~--------dg~~-----LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~T 426 (641)
T KOG0772|consen 360 AHLPGQDITSISFSY--------DGNY-----LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILT 426 (641)
T ss_pred ccCCCCceeEEEecc--------ccch-----hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEe
Confidence 9986 999999999 6666 9999999999999987532221100000 1123345666544333200
Q ss_pred --ccccCCCCCCeEEEeeccccceeeccCCccceecccccccccceeeeee
Q 000080 317 --QALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEWL 365 (2389)
Q Consensus 317 --~~~~~~l~~~~~v~W~~~~~~vf~~~~e~~~~~~s~~~~~~~v~~~eW~ 365 (2389)
-..||+--..+++.=.+--+.||+++- ...-|-.|.|+
T Consensus 427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i-----------~~aSvv~~~Wh 466 (641)
T KOG0772|consen 427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDI-----------STASVVRCLWH 466 (641)
T ss_pred cccccCCCCCceEEEEeccceeeEEEecC-----------CCceEEEEeec
Confidence 112222222344433444455555542 23567889998
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.1e-11 Score=135.67 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=135.5
Q ss_pred ccccccceeecccccccccccccc--CCCCcCc-eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecc-cCCCC
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVD--PPATVEN-ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV-LPAAN 2264 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d--~~atv~n-i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~v-l~gh~ 2264 (2389)
|-+-+..|+. .-++..++|++.. +.+.+++ ..=.-++|+|+|.+++.|+.|-.|..-|.++-+.+.+++. ...+.
T Consensus 74 ~~~~d~~ata-s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne 152 (313)
T KOG1407|consen 74 PKHPDLFATA-SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNE 152 (313)
T ss_pred CCCCcceEEe-cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeee
Confidence 4445566666 5588899998862 2222222 1113569999999999999999999999876655433210 00000
Q ss_pred ------------------------------CCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceee
Q 000080 2265 ------------------------------VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC 2314 (2389)
Q Consensus 2265 ------------------------------~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl 2314 (2389)
.....|...-.+|.|+|+|++||+||.|-.|.|||++.- -+.+.+
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-----iC~R~i 227 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-----ICERCI 227 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-----hhheee
Confidence 013457788889999999999999999999999999853 567777
Q ss_pred eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2315 ~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
.-|.-+|+.+.||. ||++|||| |+|.-|-|=++ ++|..++.++ |++...+||-+|+-
T Consensus 228 sRldwpVRTlSFS~-dg~~lASa---SEDh~IDIA~v--etGd~~~eI~-~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSH-DGRMLASA---SEDHFIDIAEV--ETGDRVWEIP-CEGPTFTVAWHPKR 284 (313)
T ss_pred ccccCceEEEEecc-Ccceeecc---CccceEEeEec--ccCCeEEEee-ccCCceeEEecCCC
Confidence 88999999999999 99999997 79999999887 7888899988 88889999988863
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-10 Score=130.33 Aligned_cols=264 Identities=17% Similarity=0.261 Sum_probs=170.4
Q ss_pred eccCCCCCeeEEEEcCCCCCCCcEEE-ecCCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCC--CCeEEEEe
Q 000080 89 ALSDNSLPVTSISWSPETPSIGQLAA-ASENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGS--GDGIVAGG 164 (2389)
Q Consensus 89 egh~d~~dVk~VaWSPd~~~~GeIaA-SyDntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpd--G~rLaSgg 164 (2389)
.+|+| -|.+|.|-+. |..+|+ |+|.+|+||..+ +++-.|.|+..-. |++.||.|.|-+- |+-+|+|+
T Consensus 10 s~h~D--lihdVs~D~~---GRRmAtCSsDq~vkI~d~~----~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 10 SGHKD--LIHDVSFDFY---GRRMATCSSDQTVKIWDST----SDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred cCCcc--eeeeeeeccc---CceeeeccCCCcEEEEecc----CCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 56777 7999999997 666775 579999999954 2334799988884 9999999999875 89999999
Q ss_pred cc--eEEeec-------cCCcEEEEEEeeccccceEEEEeecCC--Cc-eEeeecccc---cccCCCCCCCceeEEEeeC
Q 000080 165 ME--TVLWKK-------KNTLWEIAWKFKENYPQNLVSATWSIE--GP-SATAASMSQ---LDLLGPKEAGKCVFICCSD 229 (2389)
Q Consensus 165 dD--V~IW~~-------~~s~Wecvwt~~~~~~~~ivsvaWSpd--G~-fATag~dik---f~~~~~~~~~kpV~V~~~d 229 (2389)
.| +.||.. ....|...+++. +....+++|.++|- |. +|+|+.|.- |+.-+..+- .-|-. .
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL--s~W~L--q 155 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL--SQWTL--Q 155 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc--ccchh--h
Confidence 98 999996 224798888765 34456789999994 88 999999654 332211111 11211 1
Q ss_pred CCcc-ceeecccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecC-----CeEEEEEeecCC-ccccccc--ccCC-
Q 000080 230 GKSE-YIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLD-----GTVRLWCEMDSG-KTRKVAK--DTND- 299 (2389)
Q Consensus 230 g~~~-~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdD-----gTVRLW~e~d~G-k~kk~~~--~~~d- 299 (2389)
.+.+ .......|.++-.||.|+|+ +| .+..||-+|++ +.++||...++| |.+|-++ +..|
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~s--r~--------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPS--RM--------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccc--cc--------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 1111 11123568899999999984 33 45568888888 689999999998 6655332 2222
Q ss_pred ------CCccceeEEEEEEEeecccccCCCCCCeEEEeeccccceeeccCCccc-------eecccccccc-cceeeeee
Q 000080 300 ------HKTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANH-------FISTGVYEHG-GTGKCEWL 365 (2389)
Q Consensus 300 ------~~~~~~sF~vaA~I~~~~~~~~~l~~~~~v~W~~~~~~vf~~~~e~~~-------~~~s~~~~~~-~v~~~eW~ 365 (2389)
-++.+++||++|+-- ..| .++ |.|.=+ -+-++.-+.+++. ...++.-+|. +|=.++|+
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~----kDg-v~I-~~v~~~--~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVAT----KDG-VRI-FKVKVA--RSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred ceeeeeccccCCceeeEEEee----cCc-EEE-EEEeec--cchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence 346799999999965 444 211 222110 0111111111111 1123344664 88899998
Q ss_pred ------EeecCCccceeEEEeeecc
Q 000080 366 ------VGYGPGSLVTLWAIHCLDD 384 (2389)
Q Consensus 366 ------~~~~PGs~l~~W~v~~LDd 384 (2389)
.+-|--..+++|..-+-|.
T Consensus 298 mtGtiLsStGdDG~VRLWkany~n~ 322 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRLWKANYNNL 322 (361)
T ss_pred eeeeEEeecCCCceeeehhhhhhhh
Confidence 3444434556777666554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-11 Score=142.11 Aligned_cols=147 Identities=19% Similarity=0.252 Sum_probs=117.3
Q ss_pred EEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeC
Q 000080 2223 RAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2223 rsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl 2300 (2389)
.+++|||--. .|+||-.-+.|++|...+|.=... ..|..||+..|-.+++||.- ..|||||.||+|||||+
T Consensus 215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD-------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred eeeecccccccccccCccccceEeeeeccCceeec-------CccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 6789999322 478888888999999988753221 23678899999999999984 79999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCC-CCCCceEEEEeecCcEEEEeecc--c
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA-PPTSSRASITCHEGLYDLFLPLK--L 2377 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~-~tg~~v~sL~GH~~~V~svA~~~--~ 2377 (2389)
+.+.+ ++......|.+-|+-|.|+. .-.+|||| ++|||++|||+.. ..++.|..|.-|...|+||..+| +
T Consensus 288 Rs~~~---~~~~~~kAh~sDVNVISWnr-~~~lLasG---~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 288 RSGPK---KAAVSTKAHNSDVNVISWNR-REPLLASG---GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred cCCCc---cceeEeeccCCceeeEEccC-Ccceeeec---CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC
Confidence 98732 34444488999999999998 55699996 4999999999852 34456899999999999998776 4
Q ss_pred chhhhc
Q 000080 2378 LNFALS 2383 (2389)
Q Consensus 2378 ~~~~~s 2383 (2389)
..+|.|
T Consensus 361 s~iaas 366 (440)
T KOG0302|consen 361 SVIAAS 366 (440)
T ss_pred ceEEec
Confidence 444443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-08 Score=136.04 Aligned_cols=193 Identities=11% Similarity=0.131 Sum_probs=140.3
Q ss_pred CCCCCCCCCcccccccccccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCC
Q 000080 15 PCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNS 94 (2389)
Q Consensus 15 ~~~~~~~~lpl~~~~~~~ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~ 94 (2389)
+++.-++++|+..-.+..-++.++.+-.++.|.|+++...|.+||..|...+-.|+.+..+...+.+|++ +.+....
T Consensus 18 y~~gsi~~~pftay~sg~~vvIl~n~fervQiIp~~~~g~~~vsav~c~~~tG~IA~sygn~v~I~eP~~--i~s~k~n- 94 (2439)
T KOG1064|consen 18 YSVGSIGDLPFTAYASGCDVVILTNDFERVQIIPGAKHGNILVSAVDCSQQTGKIAASYGNVVSIFEPTN--ILSSKGN- 94 (2439)
T ss_pred ceeceECCeeEEEeecCCceEEEcCCceeEEeccccCcCceEEEEEeeccccceeeeccCCeeeecCCcc--hhhhcCC-
Confidence 4666799999999999999999999999999999998878999999999999999999999888889998 2222222
Q ss_pred CCeeEEEEcCCCCCCCcE-------------EEecCCeEEEEeeCC-------C-CC----CCCccceeeEEecccceEE
Q 000080 95 LPVTSISWSPETPSIGQL-------------AAASENCIFVFAHDS-------A-SS----KGSFCWSQNAILVQGTKVE 149 (2389)
Q Consensus 95 ~dVk~VaWSPd~~~~GeI-------------aASyDntIRVw~~d~-------~-~~----kgd~~W~~~~tL~hssTV~ 149 (2389)
++..+.|.+.|+..++. ++.+++.+.+|.+-. + -+ ...-+|.+.++......|-
T Consensus 95 -~~~~~~W~~t~qf~~~~~~~s~~w~~~~~rlltgs~~l~Lwq~~~~~~~~~~~~i~d~~l~~~~~We~iW~~k~~~~v~ 173 (2439)
T KOG1064|consen 95 -PHLAVQWVQTTQFFHDSTVVSLNWNFEGLRLLTGSDNLQLWQETINFSIEEPEEITDTVLPKRRDWELIWSCKTPSPVY 173 (2439)
T ss_pred -cceeeeEEeeecccccccceeeeeccccchhhhcCcceEEEeccCCcccccccccccccccccccceEEEeccCCccee
Confidence 33444444443333332 223357888995421 0 00 0112588888877777799
Q ss_pred EEeecCCCCeEEEEecc---eEEeeccC-------CcEEEEEEeeccccceEEEEeec------CCCc----eEeeeccc
Q 000080 150 AIEWTGSGDGIVAGGME---TVLWKKKN-------TLWEIAWKFKENYPQNLVSATWS------IEGP----SATAASMS 209 (2389)
Q Consensus 150 sIAWSpdG~rLaSggdD---V~IW~~~~-------s~Wecvwt~~~~~~~~ivsvaWS------pdG~----fATag~di 209 (2389)
.+.|||||.++|++|.+ +++|.+.+ ..+.. +...||+.|--+.|. |.|. +-|||-|.
T Consensus 174 ~~~~SpDG~f~at~g~~dclaKvwy~~~~~~~~~~~~f~~---vyL~HP~~Vs~~~WRktskymp~gsv~nvL~T~C~D~ 250 (2439)
T KOG1064|consen 174 SSTISPDGEFFATIGKRDCLAKVWYKSTVSQSGGEESFSF---VYLPHPRRVSGFQWRKTSKYMPRGSVSNVLMTCCLDN 250 (2439)
T ss_pred EEEEcCCcceEEeccccCcchhhhcccccccccCccceee---EeccCCcccccceeccccccCCccchhhhHHhhhccC
Confidence 99999999999999996 89999421 22333 357899988888888 5554 77787765
Q ss_pred ccccC
Q 000080 210 QLDLL 214 (2389)
Q Consensus 210 kf~~~ 214 (2389)
..++|
T Consensus 251 v~RIW 255 (2439)
T KOG1064|consen 251 VCRIW 255 (2439)
T ss_pred ceEEE
Confidence 53443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-11 Score=144.02 Aligned_cols=152 Identities=22% Similarity=0.316 Sum_probs=125.2
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
..|.+++-+|+|.+|+.|..-+.|+||.+.+|..+.++. +| =..|+++.|+-||..|.|||.||.|.+|+
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~---aH-------YQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS---AH-------YQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH---hh-------ccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 347999999999999999899999999999999988774 44 47899999999999999999999999998
Q ss_pred CCCCC----ccCcccceeeeecCCCeeEEEEecC-CCCEEEEeecCCCCCeEEEeeC-----------------------
Q 000080 2300 LEVGG----RSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDT----------------------- 2351 (2389)
Q Consensus 2300 l~tgg----rs~~k~l~tl~gHs~~V~sVAFSP~-DGslLASAG~sS~D~TVrLWD~----------------------- 2351 (2389)
+.+-- ...++|+..+..|.-.|.++-..++ ...+|+|+ |.|+|+|+||+
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta---S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpa 228 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA---SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPA 228 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe---cCCceEEEEEeccceeeEEEecCCcceeEEEccc
Confidence 74310 0146789999999999999877763 33678887 69999999995
Q ss_pred --------------------CC------------CCCCceEEEEeecC--cEEEEeecccchhhhcc
Q 000080 2352 --------------------LA------------PPTSSRASITCHEG--LYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2352 --------------------l~------------~tg~~v~sL~GH~~--~V~svA~~~~~~~~~s~ 2384 (2389)
.. ..+..++.+.||++ .|+|+|.+.||.-.+|-
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG 295 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG 295 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence 01 12334667899999 99999999999877763
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-11 Score=149.78 Aligned_cols=132 Identities=12% Similarity=0.139 Sum_probs=110.6
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
-+++-.-++. ++|||.|.|+|+|-. |++..+++ ||.+.|++|++=|++ .++|||.|.|||+|.-.
T Consensus 105 C~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~----------gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~- 169 (745)
T KOG0301|consen 105 CSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ----------GHTASVWAVASLPEN-TYVTGSADKTIKLWKGG- 169 (745)
T ss_pred eeeecCCcCc-eEecccccceEEecc--hhhhcccC----------CcchheeeeeecCCC-cEEeccCcceeeeccCC-
Confidence 5666666666 999999999999986 57776652 577999999999998 99999999999999653
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
+.+.++.||++.|+.+++.+ ++.+| |+ +.|+.||+||+ ++.++....||++-|.+++....+.-++
T Consensus 170 ------~~l~tf~gHtD~VRgL~vl~-~~~fl-Sc---sNDg~Ir~w~~---~ge~l~~~~ghtn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 170 ------TLLKTFSGHTDCVRGLAVLD-DSHFL-SC---SNDGSIRLWDL---DGEVLLEMHGHTNFVYSISMALSDGLIV 235 (745)
T ss_pred ------chhhhhccchhheeeeEEec-CCCeE-ee---cCCceEEEEec---cCceeeeeeccceEEEEEEecCCCCeEE
Confidence 46788999999999999998 65655 65 59999999997 6899999999999999999555555444
Q ss_pred c
Q 000080 2383 S 2383 (2389)
Q Consensus 2383 s 2383 (2389)
|
T Consensus 236 s 236 (745)
T KOG0301|consen 236 S 236 (745)
T ss_pred E
Confidence 4
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=138.48 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=117.3
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
.=+.|||-+++|+.|+.||.|-+|.+.++...+.|. ||...+++=.|.|||+++++|..||||++||+.+
T Consensus 152 eWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~----------Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 152 EWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS----------GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred EEEEecccccEEEeecCCCcEEEEECCCcceeeEec----------CCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 446999999999999999999999998876666662 5678899999999999999999999999999988
Q ss_pred CCc-----------------------------------------------------------------------------
Q 000080 2303 GGR----------------------------------------------------------------------------- 2305 (2389)
Q Consensus 2303 ggr----------------------------------------------------------------------------- 2305 (2389)
+..
T Consensus 222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~ 301 (399)
T KOG0296|consen 222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA 301 (399)
T ss_pred CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence 621
Q ss_pred -------------cCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEE
Q 000080 2306 -------------SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLF 2372 (2389)
Q Consensus 2306 -------------s~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~sv 2372 (2389)
.....++..-.|+..|..+-|.+ + .+|+|+ +.|++||+||. .+|+++..+.||..+|.++
T Consensus 302 A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-~~l~t~---c~~g~v~~wDa--RtG~l~~~y~GH~~~Il~f 374 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T-DYLLTA---CANGKVRQWDA--RTGQLKFTYTGHQMGILDF 374 (399)
T ss_pred hcccccceEEEEecccchhheeccCCCceEEEEEcC-c-chheee---ccCceEEeeec--cccceEEEEecCchheeEE
Confidence 00001111123777788888887 4 556654 58889999997 5899999999999999999
Q ss_pred eecccchhhhcc
Q 000080 2373 LPLKLLNFALSK 2384 (2389)
Q Consensus 2373 A~~~~~~~~~s~ 2384 (2389)
+.+|++++.++-
T Consensus 375 ~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 375 ALSPQKRLVVTV 386 (399)
T ss_pred EEcCCCcEEEEe
Confidence 999999998863
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.2e-11 Score=137.29 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=112.1
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC--EEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH--RFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~--~LASgS~DgTVkLWD 2299 (2389)
+.+||. +|+++||||.|-||+|||..+.+++.++- -|.+.|+++.|.|+-. .|.||++||.|.+|+
T Consensus 46 itavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll----------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 46 ITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL----------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred eeEEEe--cceeEeccCCCCcEEEEeccchhhhccee----------ccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 366666 58999999999999999998888877763 2678999999999975 999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEEEeecCcEEEEeeccc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL~GH~~~V~svA~~~~ 2377 (2389)
+..- ..+.++.+|.+.|++++.+| +|++-.|.| .|+++|+||+. .|+. +..|. | ..+.|.++|+
T Consensus 114 ~~~W-----~~~~slK~H~~~Vt~lsiHP-S~KLALsVg---~D~~lr~WNLV--~Gr~a~v~~L~-~--~at~v~w~~~ 179 (362)
T KOG0294|consen 114 VGSW-----ELLKSLKAHKGQVTDLSIHP-SGKLALSVG---GDQVLRTWNLV--RGRVAFVLNLK-N--KATLVSWSPQ 179 (362)
T ss_pred cCCe-----EEeeeecccccccceeEecC-CCceEEEEc---CCceeeeehhh--cCccceeeccC-C--cceeeEEcCC
Confidence 9865 47788999999999999999 999888875 89999999985 3333 33332 2 2445889999
Q ss_pred ch-hhhcc
Q 000080 2378 LN-FALSK 2384 (2389)
Q Consensus 2378 ~~-~~~s~ 2384 (2389)
|+ |+++-
T Consensus 180 Gd~F~v~~ 187 (362)
T KOG0294|consen 180 GDHFVVSG 187 (362)
T ss_pred CCEEEEEe
Confidence 98 76653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-11 Score=144.70 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=117.7
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEec----ccCCCCCC--CC--CCCCCEEEEEECCCCCEEEEEeC
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYG----VLPAANVP--PP--YALASISALQFDHYGHRFASAAL 2291 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~----vl~gh~~p--~~--GH~~~V~sVaFSPDG~~LASgS~ 2291 (2389)
.++.+++++||..+..++|-|++|-=|++.+|+-.+-.. ++..|.+| ++ +|...|.+++.||||++||+|+.
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC
Confidence 456899999999999999999999999999998542111 11224443 23 78899999999999999999999
Q ss_pred CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEE
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDL 2371 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~s 2371 (2389)
|..|.|||..+. .++..+.+|.+.|.+++|--+..+++ ++ |.|++|++|++ .+-..+.+|.||++.|..
T Consensus 223 d~~v~Iw~~~t~-----ehv~~~~ghr~~V~~L~fr~gt~~ly-s~---s~Drsvkvw~~--~~~s~vetlyGHqd~v~~ 291 (479)
T KOG0299|consen 223 DRHVQIWDCDTL-----EHVKVFKGHRGAVSSLAFRKGTSELY-SA---SADRSVKVWSI--DQLSYVETLYGHQDGVLG 291 (479)
T ss_pred CceEEEecCccc-----chhhcccccccceeeeeeecCcccee-ee---ecCCceEEEeh--hHhHHHHHHhCCccceee
Confidence 999999999986 46777899999999999997554555 44 58999999998 344458899999999998
Q ss_pred Eee
Q 000080 2372 FLP 2374 (2389)
Q Consensus 2372 vA~ 2374 (2389)
|.-
T Consensus 292 Ida 294 (479)
T KOG0299|consen 292 IDA 294 (479)
T ss_pred ech
Confidence 874
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=133.49 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=115.0
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC--------C-------------------------
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV--------P------------------------- 2266 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~--------p------------------------- 2266 (2389)
.+|.+|.||++|..++++++|-+++|+|..+|+++++... +-+.+ +
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 4568999999999999999999999999999998876531 10000 0
Q ss_pred --CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC
Q 000080 2267 --PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI 2344 (2389)
Q Consensus 2267 --~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~ 2344 (2389)
.+||...|.++.-+|-+..|.|+|.|+||||||+++.. +.--+ +...-.-+||.| .|-++|.| ....
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-----cqg~l--~~~~~pi~AfDp-~GLifA~~---~~~~ 162 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-----CQGLL--NLSGRPIAAFDP-EGLIFALA---NGSE 162 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-----CceEE--ecCCCcceeECC-CCcEEEEe---cCCC
Confidence 78999999999999999999999999999999999752 21111 222333589999 99999885 3444
Q ss_pred eEEEeeCCCCCCCceEEEE---eecCcEEEEeecccchhhh
Q 000080 2345 NVVVWDTLAPPTSSRASIT---CHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2345 TVrLWD~l~~tg~~v~sL~---GH~~~V~svA~~~~~~~~~ 2382 (2389)
.|+|+|+..-.....+++. +-..+.+.+-+|++|..+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 9999998543334444443 3466788999999998876
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-11 Score=138.99 Aligned_cols=175 Identities=15% Similarity=0.196 Sum_probs=136.7
Q ss_pred cccccceeeccccccccccccccCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCC
Q 000080 2190 GYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPY 2269 (2389)
Q Consensus 2190 g~~~~~Asg~~~d~~~~~~~~~d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~G 2269 (2389)
|++....+.|-..+ ..+.-......+-++| +.|+-....+++.++|.|.|.+||.+++|+|+.+|+ |
T Consensus 122 a~tsrivssFk~~t-~~~~lvre~~GHkDGi--W~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~----------G 188 (481)
T KOG0300|consen 122 APTSRIVSSFKDGT-VKFRLVRELEGHKDGI--WHVAADSTQPICGTASADHTARIWSLESGACLATYT----------G 188 (481)
T ss_pred CCcchheeeecCCc-eeEeehhhhcccccce--eeehhhcCCcceeecccccceeEEeeccccceeeec----------c
Confidence 44455555544222 2222222334445544 999999999999999999999999999999999994 6
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC----CCC---------------------------cc----Ccccceee
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLE----VGG---------------------------RS----NVRPMESC 2314 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~----tgg---------------------------rs----~~k~l~tl 2314 (2389)
|.+.|.+|+|+|.|..+++||+|+|-.||... +.. ++ .-.|+..+
T Consensus 189 H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l 268 (481)
T KOG0300|consen 189 HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL 268 (481)
T ss_pred cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee
Confidence 88999999999999999999999999999721 100 00 11367789
Q ss_pred eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2315 ~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
.||.+.|.+..|.. .|+.++|| |.|+|.-|||+ .++..++.|.||+...+-++-+|--+-.|.
T Consensus 269 tgH~~vV~a~dWL~-gg~Q~vTa---SWDRTAnlwDV--Etge~v~~LtGHd~ELtHcstHptQrLVvT 331 (481)
T KOG0300|consen 269 TGHRAVVSACDWLA-GGQQMVTA---SWDRTANLWDV--ETGEVVNILTGHDSELTHCSTHPTQRLVVT 331 (481)
T ss_pred eccccceEehhhhc-Ccceeeee---eccccceeeee--ccCceeccccCcchhccccccCCcceEEEE
Confidence 99999999999998 89999997 69999999998 688889999999999887777776655544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-11 Score=144.94 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=136.8
Q ss_pred ccc-ccceeeccccccccccccccC----CCCcCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCC
Q 000080 2190 GYA-GIGASALGWETQDDFEDYVDP----PATVEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA 2262 (2389)
Q Consensus 2190 g~~-~~~Asg~~~d~~~~~~~~~d~----~atv~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~g 2262 (2389)
++. +.+|+| |-|..+.+|...-. ..++.+ ..|.++.|.++++.++++|.|+++++|++.+++...||.
T Consensus 184 l~~sdtlatg-g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs---- 258 (459)
T KOG0288|consen 184 LRNSDTLATG-GSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS---- 258 (459)
T ss_pred ccCcchhhhc-chhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc----
Confidence 444 677888 88888999987532 233332 357999999999999999999999999999999999984
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC
Q 000080 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2389)
Q Consensus 2263 h~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~ 2342 (2389)
||++.|+++.|.-.-...++|+.|.|||+||+..+ .+..+.. ....+++|+-++ ..++| | -.
T Consensus 259 ------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-----~C~kt~l-~~S~cnDI~~~~---~~~~S-g--H~ 320 (459)
T KOG0288|consen 259 ------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-----YCSKTVL-PGSQCNDIVCSI---SDVIS-G--HF 320 (459)
T ss_pred ------ccccceeeehhhccccceeeccccchhhhhhhhhh-----heecccc-ccccccceEecc---eeeee-c--cc
Confidence 68899999999998888999999999999999875 2333332 235678888875 45666 4 48
Q ss_pred CCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcccc
Q 000080 2343 GINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2343 D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~~ 2386 (2389)
|++||.||. ....++.+...|. .|++|..+.+|+-.||--|
T Consensus 321 DkkvRfwD~--Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 321 DKKVRFWDI--RSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred ccceEEEec--cCCceeeEeecCc-ceeeEeeccCCeEEeeecC
Confidence 999999997 4567788888776 9999999999999888543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=132.67 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=122.7
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecc---------cCCCC---------CC---------------
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV---------LPAAN---------VP--------------- 2266 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~v---------l~gh~---------~p--------------- 2266 (2389)
..|++++..-+.+.++|||.|.++||||+.+|+++.++.. ..+.+ |.
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 3569999999999999999999999999999999877641 00111 00
Q ss_pred ----------CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEE
Q 000080 2267 ----------PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAA 2336 (2389)
Q Consensus 2267 ----------~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLAS 2336 (2389)
.+-+.+.++..-++|-|++|.+|..||.|..||+++|. +.+.+-+-|+..|+++.|+| |.++.+|
T Consensus 133 ~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~----~~v~s~~~h~~~Ind~q~s~-d~T~FiT 207 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK----ELVDSDEEHSSKINDLQFSR-DRTYFIT 207 (327)
T ss_pred hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc----eeeechhhhccccccccccC-CcceEEe
Confidence 12234678888899999999999999999999999873 45666678999999999999 9999999
Q ss_pred eecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2337 AGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2337 AG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
+ |.|.|-+|||+. +-++++++. -+-+|++.|.+|..++.+
T Consensus 208 ~---s~Dttakl~D~~--tl~v~Kty~-te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 208 G---SKDTTAKLVDVR--TLEVLKTYT-TERPVNTAAISPLLDHVI 247 (327)
T ss_pred c---ccCccceeeecc--ceeeEEEee-ecccccceecccccceEE
Confidence 6 799999999983 445567776 456899999999887653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-11 Score=142.02 Aligned_cols=136 Identities=15% Similarity=0.256 Sum_probs=117.2
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
-.|-+++.+|||++||+|+.|..|.|||..+.+.++++. ||.+.|.+++|--.-+.|-|+|.|++|++|+
T Consensus 203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~----------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK----------GHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc----------ccccceeeeeeecCccceeeeecCCceEEEe
Confidence 355899999999999999999999999999999998873 5789999999998889999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
++.- ..+.++-||++.|.++.-.. -...||+| ..|+|+|||++ +....-.+.+|.+.+-|+|+=-+
T Consensus 273 ~~~~-----s~vetlyGHqd~v~~IdaL~--reR~vtVG--grDrT~rlwKi---~eesqlifrg~~~sidcv~~In~ 338 (479)
T KOG0299|consen 273 IDQL-----SYVETLYGHQDGVLGIDALS--RERCVTVG--GRDRTVRLWKI---PEESQLIFRGGEGSIDCVAFIND 338 (479)
T ss_pred hhHh-----HHHHHHhCCccceeeechhc--ccceEEec--cccceeEEEec---cccceeeeeCCCCCeeeEEEecc
Confidence 9864 35788899999999988775 46788886 69999999998 34456678899988998887433
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-11 Score=140.00 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=116.7
Q ss_pred EEEEEcCC----CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEE
Q 000080 2223 RAFSSHPL----RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCT 2297 (2389)
Q Consensus 2223 rsVAFsPd----G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkL 2297 (2389)
..++|+-| .+++|.|+.=|.||+-|+.++++...|+ ||.+.|..|.|.|+. +++.|||.|.+|||
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~----------ghG~sINeik~~p~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR----------GHGGSINEIKFHPDRPQLVLSASKDHSVRL 162 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee----------ccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence 44566554 5689999999999999999999988875 466889999999997 89999999999999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCC----------------------CC
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA----------------------PP 2355 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~----------------------~t 2355 (2389)
||+++.. ++-.+....||.+.|.+|.|++ +|.+|||+| .|.++++|++.. ++
T Consensus 163 wnI~~~~--Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScG---mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt 236 (385)
T KOG1034|consen 163 WNIQTDV--CVAVFGGVEGHRDEVLSVDFSL-DGDRIASCG---MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPT 236 (385)
T ss_pred EeccCCe--EEEEecccccccCcEEEEEEcC-CCCeeeccC---CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCc
Confidence 9999873 4455677899999999999999 999999976 899999999831 11
Q ss_pred CCc-e---EEEEeecCcEEEEeecccchhhhcc
Q 000080 2356 TSS-R---ASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2356 g~~-v---~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.++ + .+-.-|++-|.|+-.. |||+|||
T Consensus 237 ~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 237 PKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cccccccccccccccchHHHHHHH--hhheeec
Confidence 111 1 1334588888887764 6999998
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=147.15 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=91.8
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEeeC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLWDl 2300 (2389)
|-.|+||-++ +|+|+|-|.|||||+++..+|+.+|. |.+.|+||+|+|- .++|+|||.||.||||++
T Consensus 372 ILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-----------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI 439 (712)
T KOG0283|consen 372 ILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-----------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSI 439 (712)
T ss_pred heecccccCC-eeEeccccccEEeecCCCcceeeEEe-----------cCCeeEEEEecccCCCcEeecccccceEEeec
Confidence 3778999865 88899999999999999999999995 6799999999996 589999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
-.. +...-..+| .-|++|+|.| ||+..+.| +-+|.++++++
T Consensus 440 ~d~-----~Vv~W~Dl~-~lITAvcy~P-dGk~avIG---t~~G~C~fY~t 480 (712)
T KOG0283|consen 440 SDK-----KVVDWNDLR-DLITAVCYSP-DGKGAVIG---TFNGYCRFYDT 480 (712)
T ss_pred CcC-----eeEeehhhh-hhheeEEecc-CCceEEEE---EeccEEEEEEc
Confidence 753 222222333 7899999999 89988875 68999999998
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-10 Score=146.47 Aligned_cols=176 Identities=13% Similarity=0.179 Sum_probs=143.3
Q ss_pred ccccccccccccceeeccccccccccccccCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCC
Q 000080 2183 GLAFGIPGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA 2262 (2389)
Q Consensus 2183 ~~~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~g 2262 (2389)
-|-|++-||..=-...||-.--.-...|-+.+++- -+|+.|+..-.++.++|++.||.++.||+.++..+.+++. +
T Consensus 459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~--~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--~ 534 (910)
T KOG1539|consen 459 CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK--GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL--G 534 (910)
T ss_pred cCceEEEeccCCeEEEEEcccCeeecccccCcccc--CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc--C
Confidence 34677777776666665555555555554444443 3459999999999999999999999999988888888763 2
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC
Q 000080 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2389)
Q Consensus 2263 h~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~ 2342 (2389)
..+..+..+.....||.+.+|=.|++.|+.|. +..+.+.||++.|++.+||| ||++|++| +.
T Consensus 535 ---------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-----kvvR~f~gh~nritd~~FS~-DgrWlisa---sm 596 (910)
T KOG1539|consen 535 ---------SSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-----KVVREFWGHGNRITDMTFSP-DGRWLISA---SM 596 (910)
T ss_pred ---------CCcceeeeeehhhhhhhhcCceeEEEEEchhh-----hhhHHhhccccceeeeEeCC-CCcEEEEe---ec
Confidence 45788888888899999999999999999984 57788999999999999999 99999998 69
Q ss_pred CCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2343 GINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2343 D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
|++||+||+ ++++++-.+- -+....++.++|-|+|...
T Consensus 597 D~tIr~wDl--pt~~lID~~~-vd~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 597 DSTIRTWDL--PTGTLIDGLL-VDSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred CCcEEEEec--cCcceeeeEe-cCCcceeeEECCCCCEEEE
Confidence 999999998 7888776664 5678899999999998643
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=132.40 Aligned_cols=156 Identities=21% Similarity=0.301 Sum_probs=116.3
Q ss_pred cccccccccccc--cCCCCcCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEE
Q 000080 2200 GWETQDDFEDYV--DPPATVEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS 2275 (2389)
Q Consensus 2200 ~~d~~~~~~~~~--d~~atv~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~ 2275 (2389)
+||-+.-+|+.. .++..+.+ -...-++-||+.++++++|.|.|.||||++ ..++...++ .||.+.|+
T Consensus 291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VF-------QGHtdtVT 361 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVF-------QGHTDTVT 361 (481)
T ss_pred eccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeee-------ccccccee
Confidence 677777777653 11111111 123445889999999999999999999997 444443333 26789999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCC
Q 000080 2276 ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP 2355 (2389)
Q Consensus 2276 sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~t 2355 (2389)
++.|+-|. .++|||+|.|||+||++.. | .|+.+.. -...++.|+.+. .+.+||-- -+++.|||+|+ +
T Consensus 362 S~vF~~dd-~vVSgSDDrTvKvWdLrNM-R---splATIR-tdS~~NRvavs~-g~~iIAiP---hDNRqvRlfDl---n 428 (481)
T KOG0300|consen 362 SVVFNTDD-RVVSGSDDRTVKVWDLRNM-R---SPLATIR-TDSPANRVAVSK-GHPIIAIP---HDNRQVRLFDL---N 428 (481)
T ss_pred EEEEecCC-ceeecCCCceEEEeeeccc-c---Ccceeee-cCCccceeEeec-CCceEEec---cCCceEEEEec---C
Confidence 99999875 6899999999999999986 3 4666665 456789999998 66788874 47899999998 3
Q ss_pred CCceE-----EEEeecCcEEEEeeccc
Q 000080 2356 TSSRA-----SITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2356 g~~v~-----sL~GH~~~V~svA~~~~ 2377 (2389)
|..+. +-+||.--|+|.|-.+.
T Consensus 429 G~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 429 GNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred CCccccCCcccccccceeeeeeecccc
Confidence 54443 45799999999997764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-11 Score=143.14 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=116.1
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
.+||++-.+|||+.|++|+.-.|+.|||+.........+ ++.. ....++++.|||.+...++..||.|.+||
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae-ltss-------apaCyALa~spDakvcFsccsdGnI~vwD 537 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-LTSS-------APACYALAISPDAKVCFSCCSDGNIAVWD 537 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh-cCCc-------chhhhhhhcCCccceeeeeccCCcEEEEE
Confidence 478999999999999999999999999998776433222 1111 13478899999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
+... ..+++++||++.+.+|..++ ||..|=||| -|+|||-||.. ++..++.-+ ...+|-++...|.|+
T Consensus 538 Lhnq-----~~VrqfqGhtDGascIdis~-dGtklWTGG---lDntvRcWDlr--egrqlqqhd-F~SQIfSLg~cP~~d 605 (705)
T KOG0639|consen 538 LHNQ-----TLVRQFQGHTDGASCIDISK-DGTKLWTGG---LDNTVRCWDLR--EGRQLQQHD-FSSQIFSLGYCPTGD 605 (705)
T ss_pred cccc-----eeeecccCCCCCceeEEecC-CCceeecCC---Cccceeehhhh--hhhhhhhhh-hhhhheecccCCCcc
Confidence 9864 46899999999999999999 999999976 89999999983 333333222 346788999999999
Q ss_pred hhh
Q 000080 2380 FAL 2382 (2389)
Q Consensus 2380 ~~~ 2382 (2389)
|.+
T Consensus 606 Wla 608 (705)
T KOG0639|consen 606 WLA 608 (705)
T ss_pred cee
Confidence 964
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.6e-10 Score=124.65 Aligned_cols=116 Identities=17% Similarity=0.280 Sum_probs=90.9
Q ss_pred eEEEEEEcCCCCeEE--EEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC---CcE
Q 000080 2221 STRAFSSHPLRPFFL--VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTV 2295 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LA--SGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D---gTV 2295 (2389)
+|.+++|+|+|..+| +|..++.|.|||+. ++.+.++. ...+..|.|||+|++||.|+.+ |.|
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG------------TQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec------------CCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 579999999999754 46678899999995 77777762 2457899999999999999855 669
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC----CCCeEEEeeCCCCCCCceEE
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS----NGINVVVWDTLAPPTSSRAS 2361 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS----~D~TVrLWD~l~~tg~~v~s 2361 (2389)
.+||+++. +.+.+.. |. .+..++|+| ||++|||+. ++ .|+.++||+. +|+.+..
T Consensus 128 ~~wd~~~~-----~~i~~~~-~~-~~t~~~WsP-dGr~~~ta~-t~~r~~~dng~~Iw~~---~G~~l~~ 185 (194)
T PF08662_consen 128 EFWDVRKK-----KKISTFE-HS-DATDVEWSP-DGRYLATAT-TSPRLRVDNGFKIWSF---QGRLLYK 185 (194)
T ss_pred EEEECCCC-----EEeeccc-cC-cEEEEEEcC-CCCEEEEEE-eccceeccccEEEEEe---cCeEeEe
Confidence 99999964 3444442 43 478999999 999999985 22 5899999997 5666544
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=123.57 Aligned_cols=139 Identities=9% Similarity=0.002 Sum_probs=100.1
Q ss_pred EEEEEcCCCCeEE-EEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE-EEeCCCcEEEeeC
Q 000080 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTWQL 2300 (2389)
Q Consensus 2223 rsVAFsPdG~~LA-SGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA-SgS~DgTVkLWDl 2300 (2389)
+.++|+|+|++|+ ++..|++|++||+.+++++.++.. .....+ ++ ......++|+|||+.+. +.+.+++|.+||+
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~~~~-~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF-EIPGVH-PE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee-cccccc-cc-cCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 6689999999875 555699999999999988776531 111100 01 12345789999999854 4456788999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
+++. ..... .+...+.+++|+| +|+.|++++ ..+++|++||+ .+++++++++.+ ++.+.+|++|
T Consensus 237 ~~~~-----~~~~~-~~~~~~~~~~~~~-~g~~l~~~~--~~~~~i~v~d~--~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 237 KTYE-----VLDYL-LVGQRVWQLAFTP-DEKYLLTTN--GVSNDVSVIDV--AALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCc-----EEEEE-EeCCCcceEEECC-CCCEEEEEc--CCCCeEEEEEC--CCCcEEEEEEcc-cccceeEeCC
Confidence 8762 23332 2445788999999 999998753 47899999998 467778888754 5668888764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.2e-11 Score=148.40 Aligned_cols=144 Identities=19% Similarity=0.253 Sum_probs=120.7
Q ss_pred EEEEEEcC-CCCeEEEEeCCCcEEEeecCC---CceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEE
Q 000080 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVC 2296 (2389)
Q Consensus 2222 VrsVAFsP-dG~~LASGS~DgTIRLWDl~t---Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVk 2296 (2389)
.-.|.|+. +.++|||++..|.|-+||+.. .+++..|. -|...|+++.|++-- +.|.|||.||+||
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~----------EH~Rs~~~ldfh~tep~iliSGSQDg~vK 159 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN----------EHERSANKLDFHSTEPNILISGSQDGTVK 159 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh----------hhccceeeeeeccCCccEEEecCCCceEE
Confidence 34456774 366899999999999999986 44555553 367899999999874 8999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
+||++.. +-..+..+-+-.|++|.|+|..+...|++ .+.|++++||+. ++.+|...|..|.+.|.|+..+|
T Consensus 160 ~~DlR~~-----~S~~t~~~nSESiRDV~fsp~~~~~F~s~---~dsG~lqlWDlR-qp~r~~~k~~AH~GpV~c~nwhP 230 (839)
T KOG0269|consen 160 CWDLRSK-----KSKSTFRSNSESIRDVKFSPGYGNKFASI---HDSGYLQLWDLR-QPDRCEKKLTAHNGPVLCLNWHP 230 (839)
T ss_pred EEeeecc-----cccccccccchhhhceeeccCCCceEEEe---cCCceEEEeecc-CchhHHHHhhcccCceEEEeecC
Confidence 9999975 23455666788999999999999999986 589999999996 57888999999999999999999
Q ss_pred cchhhhcc
Q 000080 2377 LLNFALSK 2384 (2389)
Q Consensus 2377 ~~~~~~s~ 2384 (2389)
.+.|+-+-
T Consensus 231 nr~~lATG 238 (839)
T KOG0269|consen 231 NREWLATG 238 (839)
T ss_pred CCceeeec
Confidence 99987654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.5e-10 Score=128.80 Aligned_cols=148 Identities=11% Similarity=0.137 Sum_probs=129.0
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
.-|.++.+|.+|.|++-|.++.+|=--+|+.+-||. ||++.|+++..+-+.+.+.+||.|.|++|||+++
T Consensus 14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~----------GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD----------GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ceEEecCCCcEEEEecCCCCceEEEecCCceeeeec----------CCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 556999999999999999999999988999999995 6789999999999999999999999999999999
Q ss_pred CCc------------------------------------------------cCcccceeeeecCCCeeEEEEecCCCCEE
Q 000080 2303 GGR------------------------------------------------SNVRPMESCLCFSSHAMDVSYITSSGSVI 2334 (2389)
Q Consensus 2303 ggr------------------------------------------------s~~k~l~tl~gHs~~V~sVAFSP~DGslL 2334 (2389)
|.. ....|+..+..+...+..+-|.| -|+.|
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETI 162 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEE
Confidence 832 02345777788889999999999 89999
Q ss_pred EEeecCCCCCeEEEeeCCCCCCCc-eEEEEeecCcEEEEeecccchhhhcccc
Q 000080 2335 AAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2335 ASAG~sS~D~TVrLWD~l~~tg~~-v~sL~GH~~~V~svA~~~~~~~~~s~~~ 2386 (2389)
.++ -+|+.|.+||. .+++. +.+-+-|...|+.+-+++++-+-+..|+
T Consensus 163 i~G---he~G~is~~da--~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 163 IAG---HEDGSISIYDA--RTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred EEe---cCCCcEEEEEc--ccCceeeechhhhccccccccccCCcceEEeccc
Confidence 986 48999999998 45544 7888999999999999999988776654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.7e-10 Score=123.91 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=109.8
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC---C-------CCCCCCCEEEEEECCCCCEEEEE
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV---P-------PPYALASISALQFDHYGHRFASA 2289 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~---p-------~~GH~~~V~sVaFSPDG~~LASg 2289 (2389)
-.||+|+|||.|.+.|.||...|.|+-....=. .++ .+|.. | .-.|.+.|+++++||+|..||+|
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~---~~r--~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALI---DLR--HAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEcccccc---Ccc--cccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 457999999999999999999999998753111 111 11211 1 12477899999999999999999
Q ss_pred eCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC---CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec
Q 000080 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS---SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2389)
Q Consensus 2290 S~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~---DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~ 2366 (2389)
|.|.+||+--.+.......-+-..+.-|.+.|++++|.-+ .|.+||||| ..|..|.+=|. ..|+..+.+.||+
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g--agdc~iy~tdc--~~g~~~~a~sght 183 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG--AGDCKIYITDC--GRGQGFHALSGHT 183 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC--CCcceEEEeec--CCCCcceeecCCc
Confidence 9999999987765322112233556679999999999843 567899987 67888888887 6788899999999
Q ss_pred CcEEEE
Q 000080 2367 GLYDLF 2372 (2389)
Q Consensus 2367 ~~V~sv 2372 (2389)
+-|-++
T Consensus 184 ghilal 189 (350)
T KOG0641|consen 184 GHILAL 189 (350)
T ss_pred ccEEEE
Confidence 988654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=121.14 Aligned_cols=142 Identities=23% Similarity=0.310 Sum_probs=114.3
Q ss_pred eEEEEEEcCCCCeEEEEeC-CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC-EEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~-DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~-~LASgS~DgTVkLW 2298 (2389)
.|+.++|+|+++.+++++. |+++++|+..+++.+.++. +|...|.+++|+|+|. .+++++.|++|++|
T Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA----------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec----------cCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 3478999999999999986 9999999998888877763 3678999999999998 66777999999999
Q ss_pred eCCCCCccCcccce-eeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2299 QLEVGGRSNVRPME-SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~-tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
|...+ .... .+.+|...+ -..|+| +|..++++ +.|+++++||+.. ....+..+.+|...|.++++.|+
T Consensus 227 d~~~~-----~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~---~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 227 DLSTG-----KLLRSTLSGHSDSV-VSSFSP-DGSLLASG---SSDGTIRLWDLRS-SSSLLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred ECCCC-----cEEeeecCCCCcce-eEeECC-CCCEEEEe---cCCCcEEEeeecC-CCcEEEEEecCCccEEEEEECCC
Confidence 98864 2344 588888875 448999 77888865 6999999999842 22235555889999999999997
Q ss_pred chhhhc
Q 000080 2378 LNFALS 2383 (2389)
Q Consensus 2378 ~~~~~s 2383 (2389)
++...+
T Consensus 296 ~~~~~~ 301 (466)
T COG2319 296 GKLLAS 301 (466)
T ss_pred CCEEEE
Confidence 666554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-10 Score=132.04 Aligned_cols=158 Identities=19% Similarity=0.235 Sum_probs=113.2
Q ss_pred eEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
+|..|.|||+.+ +++|||.|.+|||||++++.|+..|.+++| |.+.|-+|.|++||.+|||++.|.++++|+
T Consensus 137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg-------HrdeVLSvD~~~~gd~i~ScGmDhslk~W~ 209 (385)
T KOG1034|consen 137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG-------HRDEVLSVDFSLDGDRIASCGMDHSLKLWR 209 (385)
T ss_pred cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc-------ccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence 568889999864 899999999999999999999999976554 568899999999999999999999999999
Q ss_pred CCCCC------cc----------------Ccccce-eeeecC--------------------------------------
Q 000080 2300 LEVGG------RS----------------NVRPME-SCLCFS-------------------------------------- 2318 (2389)
Q Consensus 2300 l~tgg------rs----------------~~k~l~-tl~gHs-------------------------------------- 2318 (2389)
+++.. ++ .+-|.+ +-.-|.
T Consensus 210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vk 289 (385)
T KOG1034|consen 210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVK 289 (385)
T ss_pred cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccC
Confidence 98320 00 000000 001111
Q ss_pred ----------------CCeeE--EEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec--CcEEEEeecccc
Q 000080 2319 ----------------SHAMD--VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE--GLYDLFLPLKLL 2378 (2389)
Q Consensus 2319 ----------------~~V~s--VAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~--~~V~svA~~~~~ 2378 (2389)
..++- .+|.| =+++||.+ ...+.|.+||+.........+|..+. ..|+..+++++|
T Consensus 290 p~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~g---nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 290 PPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALG---NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred CCccceeeeeEeccCccceEEEEEeecH-HHHHHhhc---cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence 12222 34445 45778875 47899999998421111234555443 347799999999
Q ss_pred hhhhccccccC
Q 000080 2379 NFALSKCRCLF 2389 (2389)
Q Consensus 2379 ~~~~s~~~~~~ 2389 (2389)
...|--|.|.+
T Consensus 366 s~lv~vcdd~~ 376 (385)
T KOG1034|consen 366 SILVLVCDDGT 376 (385)
T ss_pred cEEEEEeCCCc
Confidence 99999998864
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.6e-10 Score=132.09 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=121.1
Q ss_pred eeccccccccccccccCCCC--cC-ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCC
Q 000080 2197 SALGWETQDDFEDYVDPPAT--VE-NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALAS 2273 (2389)
Q Consensus 2197 sg~~~d~~~~~~~~~d~~at--v~-ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~ 2273 (2389)
+| ++|-+.+.|+......+ +- .-.+..|..+ +..++||-.|++||+||.+++.++.+. |++ +.
T Consensus 278 sg-s~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv---~~g--------g~ 343 (459)
T KOG0288|consen 278 SG-SADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV---PLG--------GR 343 (459)
T ss_pred ec-cccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe---ecC--------cc
Confidence 44 66667777766422111 10 0012444555 667999999999999999999887765 222 58
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeec--CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCF--SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2274 V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gH--s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
|++|..+++|..+.|.+.|.|+++-|+++.+ ++..++-.|. ....+.+.||| ||.++|+| |.||.|.||++
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---I~~~~sA~g~k~asDwtrvvfSp-d~~YvaAG---S~dgsv~iW~v 416 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---IRQTFSAEGFKCASDWTRVVFSP-DGSYVAAG---SADGSVYIWSV 416 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeeccccc---EEEEeeccccccccccceeEECC-CCceeeec---cCCCcEEEEEc
Confidence 9999999999999999999999999999852 2222222221 12366799999 99999985 68999999999
Q ss_pred CCCCCCceEEEEee-cC-cEEEEeecccchhhhccc
Q 000080 2352 LAPPTSSRASITCH-EG-LYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2352 l~~tg~~v~sL~GH-~~-~V~svA~~~~~~~~~s~~ 2385 (2389)
. ++++...+... .+ +|.+++..|.|.-.||--
T Consensus 417 ~--tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 417 F--TGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred c--CceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 4 78887666543 33 699999999999998853
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=123.48 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=98.8
Q ss_pred CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEeeCCCCCccCcc
Q 000080 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVR 2309 (2389)
Q Consensus 2231 G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLWDl~tggrs~~k 2309 (2389)
+..++|++.|++|++||..+++.+.++. ++ ..+++++|+|||+.+ ++++.|++|++||+.++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~---~~--------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~----- 64 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFP---VG--------QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE----- 64 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEE---CC--------CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc-----
Confidence 3578999999999999999999888774 11 336789999999876 678889999999999862
Q ss_pred cceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2310 ~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
....+..+.. +..++|+| +|+.++.++ +.|++|++||+ .+.+.+..+.. ...+.+++++|+|++++.
T Consensus 65 ~~~~~~~~~~-~~~~~~~~-~g~~l~~~~--~~~~~l~~~d~--~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~ 131 (300)
T TIGR03866 65 VIGTLPSGPD-PELFALHP-NGKILYIAN--EDDNLVTVIDI--ETRKVLAEIPV-GVEPEGMAVSPDGKIVVN 131 (300)
T ss_pred EEEeccCCCC-ccEEEECC-CCCEEEEEc--CCCCeEEEEEC--CCCeEEeEeeC-CCCcceEEECCCCCEEEE
Confidence 3344444433 56799999 888776543 57899999998 34556666663 334678999999987653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=140.60 Aligned_cols=171 Identities=17% Similarity=0.128 Sum_probs=121.4
Q ss_pred cccccceeeccccccccccccccC--CCCcCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2190 GYAGIGASALGWETQDDFEDYVDP--PATVEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2190 g~~~~~Asg~~~d~~~~~~~~~d~--~atv~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
|.+.+.|-| +.|+..++-..-|. +.++.. .+|..|+|+|++.+||+.+-||+|++||+.++.+..++..++..+
T Consensus 106 g~g~~iaag-sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n- 183 (933)
T KOG1274|consen 106 GSGKMIAAG-SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN- 183 (933)
T ss_pred cCCcEEEee-cCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccc-
Confidence 444455556 55655555544322 222333 367999999999999999999999999999999988876433222
Q ss_pred CCCCC--CCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeee--cCCCeeEEEEecCCCCEEEEeecCC
Q 000080 2266 PPPYA--LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC--FSSHAMDVSYITSSGSVIAAAGHSS 2341 (2389)
Q Consensus 2266 p~~GH--~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g--Hs~~V~sVAFSP~DGslLASAG~sS 2341 (2389)
+. ..-+..++|+|+|..||..+.|++|++++.+... +.+.+.. |+..+.+++|+| .|++||++ +
T Consensus 184 ---~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we-----~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs---~ 251 (933)
T KOG1274|consen 184 ---EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE-----LQFKLRDKLSSSKFSDLQWSP-NGKYIAAS---T 251 (933)
T ss_pred ---cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce-----eheeecccccccceEEEEEcC-CCcEEeee---c
Confidence 11 2346779999999999999999999999998763 2222222 444488999999 89999986 5
Q ss_pred CCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2342 NGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
.||.|-|||+- +.. + .--...|.|+|+.|.+|.
T Consensus 252 ~~g~I~vWnv~--t~~-~---~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 252 LDGQILVWNVD--THE-R---HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred cCCcEEEEecc--cch-h---ccccceeEEEecCCCCCe
Confidence 89999999982 211 1 112245778888887764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-11 Score=135.39 Aligned_cols=139 Identities=8% Similarity=0.090 Sum_probs=121.3
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|++.+.+.|...-|||+.|-|.|+||.-+|..+.+|+ |..-|.+|+|+.|.+.|.+|+.+.-+|++|+
T Consensus 61 avw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-----------hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 61 AVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-----------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred ceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-----------hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 46888999999999999999999999999999999885 5677999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+... -|.....||++.|+.+-|-..| +.|.|+ ++|+||||||. .+++.+++|+ -...|+++-.+.+|+.
T Consensus 130 n~p~----App~E~~ghtg~Ir~v~wc~eD-~~iLSS---add~tVRLWD~--rTgt~v~sL~-~~s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 130 NRPK----APPKEISGHTGGIRTVLWCHED-KCILSS---ADDKTVRLWDH--RTGTEVQSLE-FNSPVTSLEVSQDGRI 198 (334)
T ss_pred cCCC----CCchhhcCCCCcceeEEEeccC-ceEEee---ccCCceEEEEe--ccCcEEEEEe-cCCCCcceeeccCCCE
Confidence 9863 4667889999999999999844 666664 59999999998 5888999998 4556888888888876
Q ss_pred h
Q 000080 2381 A 2381 (2389)
Q Consensus 2381 ~ 2381 (2389)
+
T Consensus 199 l 199 (334)
T KOG0278|consen 199 L 199 (334)
T ss_pred E
Confidence 4
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-09 Score=124.80 Aligned_cols=145 Identities=13% Similarity=0.123 Sum_probs=117.2
Q ss_pred eeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC---EEEEEeCCCcE
Q 000080 2220 ISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH---RFASAALDGTV 2295 (2389)
Q Consensus 2220 i~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~---~LASgS~DgTV 2295 (2389)
-.|.++-|=| |--.+.|+|.|.++|+||..+-+...+|. | .+.|++-+.||-.- .+|+|..|-.|
T Consensus 102 y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~------m-----e~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 102 YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK------M-----EGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred eeeeeeEEeeecCceeecccccceEEEeecccceeeEEee------c-----CceeehhhcChhhhcceEEEEecCCCcE
Confidence 4667888888 55589999999999999999888877774 2 26799999998763 78889999999
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE------------
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT------------ 2363 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~------------ 2363 (2389)
||-|+.+|. .-.+++||.+.|.+|.|+|.+.-+|||| |.|++||+||+..+ ..|...|.
T Consensus 171 rLCDi~SGs-----~sH~LsGHr~~vlaV~Wsp~~e~vLatg---saDg~irlWDiRra-sgcf~~lD~hn~k~~p~~~~ 241 (397)
T KOG4283|consen 171 RLCDIASGS-----FSHTLSGHRDGVLAVEWSPSSEWVLATG---SADGAIRLWDIRRA-SGCFRVLDQHNTKRPPILKT 241 (397)
T ss_pred EEEeccCCc-----ceeeeccccCceEEEEeccCceeEEEec---CCCceEEEEEeecc-cceeEEeecccCccCccccc
Confidence 999999983 5578999999999999999665677775 68999999998533 23433333
Q ss_pred --eecCcEEEEeecccchhhhcc
Q 000080 2364 --CHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2364 --GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.|.+.|..+|..-+|+..+++
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred cccccceeeeeeecccchhhhhc
Confidence 466889999999999987765
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=126.34 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=93.7
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|-.+-..-++.+|+|+|.|++|-||+.. |+.+.+.. .. ...-+.-+.||||+++|+++---.|++|.+
T Consensus 189 ~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---tn-------q~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 189 DIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---TN-------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred ceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec---cc-------cccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 34456677789999999999999999985 99887763 11 133466789999999999999999999987
Q ss_pred CCC---CccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2301 EVG---GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2301 ~tg---grs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
--+ .-.-....+++.||+..|..+|||| +.+.++|+ |.||++||||+
T Consensus 258 ~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtv---SkDG~wriwdt 307 (420)
T KOG2096|consen 258 IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTV---SKDGKWRIWDT 307 (420)
T ss_pred EeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEE---ecCCcEEEeec
Confidence 322 1112345788999999999999999 88999998 69999999997
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-10 Score=137.79 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=110.3
Q ss_pred eeEEEEEEcCCCCeEEEEeC-----CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc
Q 000080 2220 ISTRAFSSHPLRPFFLVGSS-----NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~-----DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT 2294 (2389)
-.|.+++.+|+|+++||+-- ---|+||+..+=..++.+ .||+-.|+.++|||||++|+|+|.|+|
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L----------~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL----------EGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee----------cccceEEEEEEECCCCcEEEEeecCce
Confidence 46799999999999999763 345899998766665544 257788999999999999999999999
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE--EEEeecCcEEEE
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA--SITCHEGLYDLF 2372 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~--sL~GH~~~V~sv 2372 (2389)
++||...... ..-..+.....|+..|++..|+| ++..+||| |.|++|++|..-..+.+++. ...-|...|+.+
T Consensus 596 ~sl~~~~~~~-~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTa---SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv 670 (764)
T KOG1063|consen 596 VSLYEVQEDI-KDEFRFACLKAHTRIIWDCSWSP-DEKYFATA---SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAV 670 (764)
T ss_pred EEeeeeeccc-chhhhhccccccceEEEEcccCc-ccceeEEe---cCCceEEEEeccCchhhhhhhhchhccCCceeeE
Confidence 9999875431 11122344678999999999999 99999997 79999999997322224432 233478888888
Q ss_pred eecccc
Q 000080 2373 LPLKLL 2378 (2389)
Q Consensus 2373 A~~~~~ 2378 (2389)
+..+.-
T Consensus 671 ~~~~~~ 676 (764)
T KOG1063|consen 671 AYLPVD 676 (764)
T ss_pred Eeeccc
Confidence 776643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-10 Score=135.91 Aligned_cols=139 Identities=19% Similarity=0.283 Sum_probs=119.3
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
.+++.+||.+...++-.||.|++||+.+...++.|+ ||.+.+.+|.+|+||..|=||+.|+|||-||+++
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq----------GhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEcccceeeeccc----------CCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 789999999999999999999999999888888884 6789999999999999999999999999999998
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
+. .+..+ .++..|.++.+.| +|.+||.| =+.++|.|=-+ ++...+-|.-|+.-|-+|-|..-|.|-+
T Consensus 583 gr-----qlqqh-dF~SQIfSLg~cP-~~dWlavG---Mens~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 583 GR-----QLQQH-DFSSQIFSLGYCP-TGDWLAVG---MENSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred hh-----hhhhh-hhhhhheecccCC-Cccceeee---cccCcEEEEec---CCccceeecccccEEEEEEecccCceee
Confidence 72 22222 3668899999999 99999974 37788888775 3445677777999999999999999988
Q ss_pred cc
Q 000080 2383 SK 2384 (2389)
Q Consensus 2383 s~ 2384 (2389)
|.
T Consensus 650 St 651 (705)
T KOG0639|consen 650 ST 651 (705)
T ss_pred ec
Confidence 74
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-09 Score=126.92 Aligned_cols=144 Identities=18% Similarity=0.265 Sum_probs=114.3
Q ss_pred ccccccceeeccccccccccccccCCCC---------cCc--eeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeE
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPPAT---------VEN--ISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATAT 2256 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~at---------v~n--i~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~T 2256 (2389)
|=-|-..||| +-|.+..+|+.-+.-.+ +.+ =+|--|+|||..+ .|+|+|.|.+|.|||+++|+.+.+
T Consensus 91 PfnD~vIASg-SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~ 169 (472)
T KOG0303|consen 91 PFNDCVIASG-SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT 169 (472)
T ss_pred ccCCceeecC-CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeee
Confidence 5567788999 99999999987322222 111 1567789999866 799999999999999999999888
Q ss_pred ecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCee-EEEEecCCCCEEE
Q 000080 2257 YGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIA 2335 (2389)
Q Consensus 2257 l~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~-sVAFSP~DGslLA 2335 (2389)
+. |.+.|+++.||-||.+|++++.|..||+||.+++. .+..-.+|.+.=. .+.|.. +|. |+
T Consensus 170 l~-----------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-----~v~e~~~heG~k~~Raifl~-~g~-i~ 231 (472)
T KOG0303|consen 170 LD-----------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-----VVSEGVAHEGAKPARAIFLA-SGK-IF 231 (472)
T ss_pred cC-----------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-----EeeecccccCCCcceeEEec-cCc-ee
Confidence 73 56899999999999999999999999999999973 4444467775433 466887 888 77
Q ss_pred EeecCC-CCCeEEEeeC
Q 000080 2336 AAGHSS-NGINVVVWDT 2351 (2389)
Q Consensus 2336 SAG~sS-~D~TVrLWD~ 2351 (2389)
|+|++- .++++-|||.
T Consensus 232 tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDP 248 (472)
T ss_pred eeccccccccceeccCc
Confidence 888754 7899999996
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=124.73 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=119.2
Q ss_pred ceeeccccccccccccccC--CCC--cCceeEEEEEEcCCCC--eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2195 GASALGWETQDDFEDYVDP--PAT--VENISTRAFSSHPLRP--FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2195 ~Asg~~~d~~~~~~~~~d~--~at--v~ni~VrsVAFsPdG~--~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
.||| +-|+++.+-+.... ..+ .+..+|.++.|.|+.. .|+||++||.|.+|+.+.=.++.+++
T Consensus 56 ~aSG-ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK---------- 124 (362)
T KOG0294|consen 56 VASG-SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK---------- 124 (362)
T ss_pred Eecc-CCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec----------
Confidence 5667 66666666655311 111 1224679999999876 89999999999999997777888885
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCcc---Ccccceee-----ee------------------------
Q 000080 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS---NVRPMESC-----LC------------------------ 2316 (2389)
Q Consensus 2269 GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs---~~k~l~tl-----~g------------------------ 2316 (2389)
+|.+.|+.|++.|.|+.-.|.+.|+++++||+-+|... +++...++ +|
T Consensus 125 ~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 125 AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE 204 (362)
T ss_pred ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhh
Confidence 35677999999999999999999999999999876320 00000000 00
Q ss_pred --cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2317 --FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2317 --Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
.+..+.++.|- ++..|++|| +|++|++||+. ...+...+.+|+++|-.+++-+.
T Consensus 205 i~~~~r~l~~~~l--~~~~L~vG~---d~~~i~~~D~d--s~~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 205 IENPKRILCATFL--DGSELLVGG---DNEWISLKDTD--SDTPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred hhccccceeeeec--CCceEEEec---CCceEEEeccC--CCccceeeecchhheeeeEEEec
Confidence 11223444454 567888875 89999999984 36778999999999999987654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=128.85 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=130.3
Q ss_pred cccceeeccccccccccccc--cCCCCcC--ceeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCce-eeEecccCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYV--DPPATVE--NISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANV 2265 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~--d~~atv~--ni~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~-l~Tl~vl~gh~~ 2265 (2389)
..++||| +-|.+..+|+.. .+.+++. +-.|.+++|||.-+ +|++||.|++|+|.|.+...+ -..+++
T Consensus 256 ~nVLaSg-saD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~------ 328 (463)
T KOG0270|consen 256 RNVLASG-SADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF------ 328 (463)
T ss_pred ceeEEec-CCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe------
Confidence 3689999 999999999986 4444443 34679999999755 899999999999999984332 222331
Q ss_pred CCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC
Q 000080 2266 PPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI 2344 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~ 2344 (2389)
.+.|-.|++.|.. +.|.++..||+|+=.|++..+ +|+.++..|...|.++++++..-.+++|+ |.|+
T Consensus 329 -----~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~ 396 (463)
T KOG0270|consen 329 -----DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDK 396 (463)
T ss_pred -----ccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEeccCCcceEEecCCCCcceeec---cccc
Confidence 2669999999986 788889999999999999865 79999999999999999998777789886 5999
Q ss_pred eEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2345 NVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2345 TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
+|+||++.....+.++.-.---+...|.++.|+-.+.|
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~l 434 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTL 434 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEE
Confidence 99999985333333322221223355666666655544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-09 Score=123.77 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=126.6
Q ss_pred cccccccccccccCCCC--cCc--eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEE
Q 000080 2200 GWETQDDFEDYVDPPAT--VEN--ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS 2275 (2389)
Q Consensus 2200 ~~d~~~~~~~~~d~~at--v~n--i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~ 2275 (2389)
.+|++.|+-...|...- ..+ -.|.+|+.+|-+..++|||.|++|||||++..+|.--+.. ..=.
T Consensus 77 k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------~~~p 144 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------SGRP 144 (311)
T ss_pred CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------------CCCc
Confidence 67777777766433111 111 2568999999999999999999999999998888665531 1124
Q ss_pred EEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeee---ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2276 ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCL---CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2276 sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~---gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
.+||+|.|-.||.|...+.|+|+|++.-++ .|+.++. +-......+.||| ||+.|.-+ ...+.+.|-|.
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dk---gPF~tf~i~~~~~~ew~~l~FS~-dGK~iLls---T~~s~~~~lDA- 216 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDK---GPFTTFSITDNDEAEWTDLEFSP-DGKSILLS---TNASFIYLLDA- 216 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCC---CCceeEccCCCCccceeeeEEcC-CCCEEEEE---eCCCcEEEEEc-
Confidence 679999999999999999999999998642 3555432 3356778999999 89977753 57888999997
Q ss_pred CCCCCceEEEEeecCcE---EEEeecccchhhhcc
Q 000080 2353 APPTSSRASITCHEGLY---DLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2353 ~~tg~~v~sL~GH~~~V---~svA~~~~~~~~~s~ 2384 (2389)
-+|...+++++|++.- -+-.+.|+|.|+|+-
T Consensus 217 -f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 217 -FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred -cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence 4677789999999876 488899999999874
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=129.90 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=109.0
Q ss_pred EEEEcCC-CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEeeCC
Q 000080 2224 AFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2224 sVAFsPd-G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLWDl~ 2301 (2389)
+++|+-+ ...|||||.|.||+|||+.+|++.+++. .|...|.+++|.|. +..|.+||.|+||+|-|++
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT----------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehh----------hcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 4455555 3479999999999999999999999873 36789999999988 5899999999999999999
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
....+ ..... ..+.|..|+|.|.+-..+.+ | ++||+|+=.|+. ..++++.+++.|.++|.+|..+..-
T Consensus 318 ~~~~s--~~~wk---~~g~VEkv~w~~~se~~f~~-~--tddG~v~~~D~R-~~~~~vwt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 318 DPSNS--GKEWK---FDGEVEKVAWDPHSENSFFV-S--TDDGTVYYFDIR-NPGKPVWTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred Ccccc--CceEE---eccceEEEEecCCCceeEEE-e--cCCceEEeeecC-CCCCceeEEEeccCCcceEEecCCC
Confidence 53211 11122 45789999999955444444 3 699999999996 5679999999999999988877653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-09 Score=118.80 Aligned_cols=145 Identities=15% Similarity=0.212 Sum_probs=119.0
Q ss_pred ccccceeeccccccccccccc--cCCCCcC---------ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecc
Q 000080 2191 YAGIGASALGWETQDDFEDYV--DPPATVE---------NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV 2259 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~--d~~atv~---------ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~v 2259 (2389)
..-|-||| +-|.++|+|+.. .-+++++ +-.|.+|+..|.|++|+||-.|....|+|++-|+.++.|.
T Consensus 193 n~~m~~sg-sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~- 270 (350)
T KOG0641|consen 193 NGAMFASG-SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH- 270 (350)
T ss_pred cCcEEEcc-CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-
Confidence 45688999 889999999884 2233333 3368999999999999999999999999999999999883
Q ss_pred cCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeec
Q 000080 2260 LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH 2339 (2389)
Q Consensus 2260 l~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~ 2339 (2389)
| |++.|++|.|||...++.++|.|..|||=|+.-. ....-++.-...|...+-.+.|+|.+=+.|.|
T Consensus 271 ------p---hsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~ehkdk~i~~rwh~~d~sfiss--- 337 (350)
T KOG0641|consen 271 ------P---HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAEHKDKAIQCRWHPQDFSFISS--- 337 (350)
T ss_pred ------C---CccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEeccCceEEEEecCccceeeec---
Confidence 1 7899999999999999999999999999999732 11223556667799999999999966566644
Q ss_pred CCCCCeEEEeeC
Q 000080 2340 SSNGINVVVWDT 2351 (2389)
Q Consensus 2340 sS~D~TVrLWD~ 2351 (2389)
|.|+|+.||-+
T Consensus 338 -sadkt~tlwa~ 348 (350)
T KOG0641|consen 338 -SADKTATLWAL 348 (350)
T ss_pred -cCcceEEEecc
Confidence 68999999975
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-08 Score=119.04 Aligned_cols=210 Identities=17% Similarity=0.211 Sum_probs=141.5
Q ss_pred CCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEEe
Q 000080 36 APTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAA 115 (2389)
Q Consensus 36 ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaAS 115 (2389)
+|...+.-++|+.| |. .+|-++++..++.| + ..+|+...--++||.+|.- | -+.|+|.|| -..++.+
T Consensus 84 gH~~~vt~~~FsSd--GK-~lat~~~Dr~Ir~w--~-~~DF~~~eHr~~R~nve~d-h---pT~V~FapD---c~s~vv~ 150 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSD--GK-KLATISGDRSIRLW--D-VRDFENKEHRCIRQNVEYD-H---PTRVVFAPD---CKSVVVS 150 (420)
T ss_pred ccCCceeeeEEcCC--Cc-eeEEEeCCceEEEE--e-cchhhhhhhhHhhccccCC-C---ceEEEECCC---cceEEEE
Confidence 67788888999998 74 67888999999998 4 4456654445778998764 5 689999998 5556643
Q ss_pred --cCCeEEEEeeCCCCC-CCCccceeeEEe----cccceEEEEeecCCCCeEEEEecc--eEEeeccCCcEEEEEEeecc
Q 000080 116 --SENCIFVFAHDSASS-KGSFCWSQNAIL----VQGTKVEAIEWTGSGDGIVAGGME--TVLWKKKNTLWEIAWKFKEN 186 (2389)
Q Consensus 116 --yDntIRVw~~d~~~~-kgd~~W~~~~tL----~hssTV~sIAWSpdG~rLaSggdD--V~IW~~~~s~Wecvwt~~~~ 186 (2389)
.++++++|+.+...+ ++.+.......+ .|.-.|-+|--...|.+|+||+.| |.||+.....-..+ ...
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~i---dtn 227 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSI---DTN 227 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeee---ccc
Confidence 579999998763211 122222222222 156667778889999999999997 99999763333322 222
Q ss_pred ccceEEEEeecCCCc-eEeeec--ccccccCCCCCCCceeEEEeeCCCccce---eecccCCCCeeEEEeccCCCCCCCC
Q 000080 187 YPQNLVSATWSIEGP-SATAAS--MSQLDLLGPKEAGKCVFICCSDGKSEYI---KLELCHPQPVSMVQWRPSTRRHSPG 260 (2389)
Q Consensus 187 ~~~~ivsvaWSpdG~-fATag~--dikf~~~~~~~~~kpV~V~~~dg~~~~~---~ve~aH~qdVn~V~W~Ps~~~~~~~ 260 (2389)
. -+-+.++=||+|. +|+||- |++ +| +|+ +..||+.+.. +...+|...|-..+++|
T Consensus 228 q-~~n~~aavSP~GRFia~~gFTpDVk--Vw------E~~--f~kdG~fqev~rvf~LkGH~saV~~~aFsn-------- 288 (420)
T KOG2096|consen 228 Q-SSNYDAAVSPDGRFIAVSGFTPDVK--VW------EPI--FTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-------- 288 (420)
T ss_pred c-ccccceeeCCCCcEEEEecCCCCce--EE------EEE--eccCcchhhhhhhheeccchhheeeeeeCC--------
Confidence 2 2334445599999 666655 544 11 111 1124443222 23589999999999999
Q ss_pred CCccccCceEEeeecCCeEEEEEee
Q 000080 261 DTKRSQRHVLLTCCLDGTVRLWCEM 285 (2389)
Q Consensus 261 Dgk~~~~nILAScSdDgTVRLW~e~ 285 (2389)
++.+ .+|.|.||++|||+.+
T Consensus 289 ~S~r-----~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 289 SSTR-----AVTVSKDGKWRIWDTD 308 (420)
T ss_pred Ccce-----eEEEecCCcEEEeecc
Confidence 4444 9999999999999955
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-10 Score=136.10 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=99.1
Q ss_pred eEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLW 2298 (2389)
-|..+.|.| |.+.||.|.+||.|+||-+..+..-.... .|.. -..+|...|+++.|.|-. +.||+++.|.||+||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-tPe~--~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM-TPEK--ILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC-Ccce--eeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 468889999 67789999999999999987664321111 0111 134678999999999985 899999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
|+.++ +....+.||++.|.++|||| ||+++||. +.|++||+++..
T Consensus 706 Dl~~~-----~~~~~l~gHtdqIf~~AWSp-dGr~~AtV---cKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 706 DLANA-----KLYSRLVGHTDQIFGIAWSP-DGRRIATV---CKDGTLRVYEPR 750 (1012)
T ss_pred ehhhh-----hhhheeccCcCceeEEEECC-CCcceeee---ecCceEEEeCCC
Confidence 99987 45678899999999999999 99999998 499999999973
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-09 Score=122.93 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=112.3
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce-eeEecccCCCCCCCCCCCCCEEEEEECC--CCCEEEEEeCCCcEEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~-l~Tl~vl~gh~~p~~GH~~~V~sVaFSP--DG~~LASgS~DgTVkL 2297 (2389)
.|.+|-|+||+.-+|+- .|..|-+|++..+.. ++.+. .++ ..+|....++=++|| ||+.+|+.+ |+|++.
T Consensus 125 ~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~-ss~----s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~ 197 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVL-SSE----SAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQF 197 (370)
T ss_pred ceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeec-ccc----cccccceecccccCCCCccceEEEeC-CCcEEE
Confidence 45899999999999986 488999999988875 33332 112 234567788889998 799999876 699999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
||++|.. +...--.+|...|+++.|+|+--.+|||+| +|+-|||||+. .+...++.|.+|+.+||+|-+.|.
T Consensus 198 ~D~RT~~----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R-~tk~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 198 WDLRTMK----KNNSIEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTR-KTKFPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred EEccchh----hhcchhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEecc-CCCccccccCCCceEEEEEEecCc
Confidence 9999863 222223568889999999995555788865 99999999996 345569999999999999999886
Q ss_pred ch
Q 000080 2378 LN 2379 (2389)
Q Consensus 2378 ~~ 2379 (2389)
-+
T Consensus 270 hd 271 (370)
T KOG1007|consen 270 HD 271 (370)
T ss_pred cc
Confidence 44
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=129.68 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=118.6
Q ss_pred CCcCceeEEEEEEcCCCC--eEEEEeCCCcEEEeecCCCcee-eEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEe
Q 000080 2215 ATVENISTRAFSSHPLRP--FFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHYG-HRFASAA 2290 (2389)
Q Consensus 2215 atv~ni~VrsVAFsPdG~--~LASGS~DgTIRLWDl~tGk~l-~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS 2290 (2389)
+-+..-+|.+++|||.-+ ++|+|.--|+|-+||+++.+.. .... -+ .+|+..|.++.|+|.. .++.+.|
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~--~f-----~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY--LF-----TPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE--Ee-----ccCCccccceEecCCChhheeeec
Confidence 334444779999999765 8999999999999999532221 1111 11 2478999999999986 7999999
Q ss_pred CCCcEEEeeCCCCCc----------------------------------------cCcccceeeeecCCCeeEEEEecCC
Q 000080 2291 LDGTVCTWQLEVGGR----------------------------------------SNVRPMESCLCFSSHAMDVSYITSS 2330 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggr----------------------------------------s~~k~l~tl~gHs~~V~sVAFSP~D 2330 (2389)
.|||||+=|++.+.- ..-..+..+.-|...|.+|+++|-.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 999999988875410 0001223344588899999999977
Q ss_pred CCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEEEeecCcEEEEeecccchhhhccc
Q 000080 2331 GSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2331 GslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
-.+|||| |.|+|+||||+..-.++. +-+...|.-.|.+..+||+|-..|..|
T Consensus 335 p~~laT~---s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 335 PWFLATA---SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred chheeec---ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec
Confidence 7899997 599999999985322222 233445999999999999998888766
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=130.90 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=119.6
Q ss_pred EEcCCCCeEEE--EeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCC
Q 000080 2226 SSHPLRPFFLV--GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2226 AFsPdG~~LAS--GS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~t 2302 (2389)
-|+.+..++|. +|..|.|-|+|+...-.+ |+.-||..-...-|+.++++|-. ++||.|.+||.|+||.+.+
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrL------PDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRL------PDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCC------CcccccccccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 47777777665 567889999999754332 23233433344679999999864 8999999999999999988
Q ss_pred CCcc--CcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2303 GGRS--NVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2303 ggrs--~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+|.+ ...|-..+.+|...|+++.|+|=-..+||++ |.|-||+|||+ ++++..-+|+||+++|-.+|-||+|+.
T Consensus 660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a---syd~Ti~lWDl--~~~~~~~~l~gHtdqIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 660 NGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA---SYDSTIELWDL--ANAKLYSRLVGHTDQIFGIAWSPDGRR 734 (1012)
T ss_pred CCCCcccCCcceeeecccceEEEEEecchhhhHhhhh---hccceeeeeeh--hhhhhhheeccCcCceeEEEECCCCcc
Confidence 7521 1134456889999999999999766788887 68999999998 566777899999999999999999999
Q ss_pred hhcccc
Q 000080 2381 ALSKCR 2386 (2389)
Q Consensus 2381 ~~s~~~ 2386 (2389)
+-+-|.
T Consensus 735 ~AtVcK 740 (1012)
T KOG1445|consen 735 IATVCK 740 (1012)
T ss_pred eeeeec
Confidence 999885
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=114.28 Aligned_cols=139 Identities=20% Similarity=0.325 Sum_probs=110.0
Q ss_pred EEEEEE-cCCCC-eEEEEeC-CCcEEEeecCC-CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCcEE
Q 000080 2222 TRAFSS-HPLRP-FFLVGSS-NTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVC 2296 (2389)
Q Consensus 2222 VrsVAF-sPdG~-~LASGS~-DgTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgTVk 2296 (2389)
+..+.+ ++++. +++..+. |+++++||+.. +.....+. +|...|..++|+|+|+.+++++. |++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE----------GHSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred eeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe----------cCcccEEEEEECCCCCEEEecCCCCCceE
Confidence 455566 89998 5665455 99999999976 55555553 46688999999999999999986 99999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCC-EEEEeecCCCCCeEEEeeCCCCCCCceE-EEEeecCcEEEEee
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGLYDLFLP 2374 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGs-lLASAG~sS~D~TVrLWD~l~~tg~~v~-sL~GH~~~V~svA~ 2374 (2389)
+|++.++ ..+.++.+|...|.+++|+| +|. .++++ +.|++|++||.. .+..+. .+.+|...+ .-.+
T Consensus 182 ~~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~---~~d~~i~~wd~~--~~~~~~~~~~~~~~~~-~~~~ 249 (466)
T COG2319 182 LWDLRTG-----KPLSTLAGHTDPVSSLAFSP-DGGLLIASG---SSDGTIRLWDLS--TGKLLRSTLSGHSDSV-VSSF 249 (466)
T ss_pred EEEcCCC-----ceEEeeccCCCceEEEEEcC-CcceEEEEe---cCCCcEEEEECC--CCcEEeeecCCCCcce-eEeE
Confidence 9999974 46778888999999999998 887 55542 589999999873 566677 799999986 4477
Q ss_pred cccchhhh
Q 000080 2375 LKLLNFAL 2382 (2389)
Q Consensus 2375 ~~~~~~~~ 2382 (2389)
++++.+.+
T Consensus 250 ~~~~~~~~ 257 (466)
T COG2319 250 SPDGSLLA 257 (466)
T ss_pred CCCCCEEE
Confidence 77775444
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=127.46 Aligned_cols=203 Identities=16% Similarity=0.315 Sum_probs=137.9
Q ss_pred ccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcE
Q 000080 33 IPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQL 112 (2389)
Q Consensus 33 ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeI 112 (2389)
+--.|..-.+.++|... .+..|+++..++-+ + .+.-....+ ++.+|. +.|+..+|+|| +..
T Consensus 255 ~~~~h~~rvg~laW~~~-----~lssGsr~~~I~~~--d-----vR~~~~~~~-~~~~H~--qeVCgLkws~d----~~~ 315 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWNSS-----VLSSGSRDGKILNH--D-----VRISQHVVS-TLQGHR--QEVCGLKWSPD----GNQ 315 (484)
T ss_pred ccCCcCceeEEEeccCc-----eEEEecCCCcEEEE--E-----Eecchhhhh-hhhccc--ceeeeeEECCC----CCe
Confidence 33347888899999943 67777777766555 2 111111222 456664 58999999998 555
Q ss_pred EEe--cCCeEEEEeeCCCCCCCCccceeeEEe-cccceEEEEeecCCCCeEE-EEec--c--eEEeeccCCcEE-EEEEe
Q 000080 113 AAA--SENCIFVFAHDSASSKGSFCWSQNAIL-VQGTKVEAIEWTGSGDGIV-AGGM--E--TVLWKKKNTLWE-IAWKF 183 (2389)
Q Consensus 113 aAS--yDntIRVw~~d~~~~kgd~~W~~~~tL-~hssTV~sIAWSpdG~rLa-Sggd--D--V~IW~~~~s~We-cvwt~ 183 (2389)
+|| .||.+.||... +.....++ .|+..|.+++|.|--..|+ +||. | +++|+..++.-. ++
T Consensus 316 lASGgnDN~~~Iwd~~--------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v--- 384 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGL--------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV--- 384 (484)
T ss_pred eccCCCccceEeccCC--------CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc---
Confidence 554 48999999864 12223333 5999999999999877555 6655 2 999997755432 23
Q ss_pred eccccceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCC
Q 000080 184 KENYPQNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDT 262 (2389)
Q Consensus 184 ~~~~~~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dg 262 (2389)
+..--|-++.||+... |+|+-+... +-+-||.+.. ........+|+..|-..+|+| ||
T Consensus 385 --dtgsQVcsL~Wsk~~kEi~sthG~s~----------n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SP--------dg 443 (484)
T KOG0305|consen 385 --DTGSQVCSLIWSKKYKELLSTHGYSE----------NQITLWKYPS-MKLVAELLGHTSRVLYLALSP--------DG 443 (484)
T ss_pred --ccCCceeeEEEcCCCCEEEEecCCCC----------CcEEEEeccc-cceeeeecCCcceeEEEEECC--------CC
Confidence 2223355889999986 888877532 1233343322 222334589999999999999 88
Q ss_pred ccccCceEEeeecCCeEEEEEeecCCccc
Q 000080 263 KRSQRHVLLTCCLDGTVRLWCEMDSGKTR 291 (2389)
Q Consensus 263 k~~~~nILAScSdDgTVRLW~e~d~Gk~k 291 (2389)
.. ++|++.|.|+|+|..-+..+.+
T Consensus 444 ~~-----i~t~a~DETlrfw~~f~~~~~~ 467 (484)
T KOG0305|consen 444 ET-----IVTGAADETLRFWNLFDERPKS 467 (484)
T ss_pred CE-----EEEecccCcEEeccccCCCCcc
Confidence 88 9999999999999988865543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-09 Score=136.62 Aligned_cols=142 Identities=19% Similarity=0.303 Sum_probs=113.9
Q ss_pred ccccccceeeccccccccccccccC--CCCcC-ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDP--PATVE-NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~--~atv~-ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
-|-.....++ +.+..-.+|+|... ..+++ ..++..+..|.....+|.+-+|-.|++.|..+-+-++.|.
T Consensus 502 D~~n~~~vsa-~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~------- 573 (910)
T KOG1539|consen 502 DGTNRLLVSA-GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW------- 573 (910)
T ss_pred cCCCceEEEc-cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh-------
Confidence 3344456667 78888899999633 23332 2456778899999999999999999999998888887774
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCe
Q 000080 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~T 2345 (2389)
||.+.|++..|||||++|++++.|+|||+||+-++. .+-. ......+.++.||| +|.+|||+- .+.+-
T Consensus 574 ---gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~-----lID~-~~vd~~~~sls~SP-ngD~LAT~H--vd~~g 641 (910)
T KOG1539|consen 574 ---GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT-----LIDG-LLVDSPCTSLSFSP-NGDFLATVH--VDQNG 641 (910)
T ss_pred ---ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc-----eeee-EecCCcceeeEECC-CCCEEEEEE--ecCce
Confidence 578999999999999999999999999999999973 3333 23567888999999 999999983 34477
Q ss_pred EEEee
Q 000080 2346 VVVWD 2350 (2389)
Q Consensus 2346 VrLWD 2350 (2389)
|.||-
T Consensus 642 IylWs 646 (910)
T KOG1539|consen 642 IYLWS 646 (910)
T ss_pred EEEEE
Confidence 99997
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=114.73 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=99.6
Q ss_pred EEEEEcCCCCeEEEEeC---C-------CcEEEeecC-CCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-
Q 000080 2223 RAFSSHPLRPFFLVGSS---N-------THIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA- 2290 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~---D-------gTIRLWDl~-tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS- 2290 (2389)
-.+.|||+|.+|+.-.+ | +...||-++ .+..+..+. ....+.|.+++|+|+|+.||...
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~---------l~~~~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE---------LKKEGPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee---------ccCCCceEEEEECcCCCEEEEEEc
Confidence 45789999997655333 1 235555552 222333332 11235699999999999987654
Q ss_pred -CCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcE
Q 000080 2291 -LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLY 2369 (2389)
Q Consensus 2291 -~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V 2369 (2389)
.++.|.|||++. +++.++ +...++.|.|+| +|++||+||++...|.|++||+. +.+.+.+++ | ..+
T Consensus 80 ~~~~~v~lyd~~~------~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~-~-~~~ 146 (194)
T PF08662_consen 80 SMPAKVTLYDVKG------KKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR--KKKKISTFE-H-SDA 146 (194)
T ss_pred cCCcccEEEcCcc------cEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC--CCEEeeccc-c-CcE
Confidence 578999999973 355555 456788999999 99999999987777899999983 445565554 3 358
Q ss_pred EEEeecccchhhhc
Q 000080 2370 DLFLPLKLLNFALS 2383 (2389)
Q Consensus 2370 ~svA~~~~~~~~~s 2383 (2389)
+.++.+|+|++.++
T Consensus 147 t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 147 TDVEWSPDGRYLAT 160 (194)
T ss_pred EEEEEcCCCCEEEE
Confidence 89999999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.2e-09 Score=133.89 Aligned_cols=141 Identities=14% Similarity=0.156 Sum_probs=111.7
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
++|.++|+-+|.++|.||+|..||+=+..++....+++ ||.+.|.+|.|+|+|++||+.+.||+|++||+
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr----------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR----------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEeccccchheeec----------ccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 45889999999999999999999999998888888876 57799999999999999999999999999999
Q ss_pred CCCCccCcccceeeee--------cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE--EeecCcEE
Q 000080 2301 EVGGRSNVRPMESCLC--------FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI--TCHEGLYD 2370 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~g--------Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL--~GH~~~V~ 2370 (2389)
.++. ...++.+ -+..+.-++|+|++|++++- +.|++|++++.. .......| .-|...+.
T Consensus 168 ~~~~-----~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~----~~d~~Vkvy~r~--~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 168 QDGI-----LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP----PVDNTVKVYSRK--GWELQFKLRDKLSSSKFS 236 (933)
T ss_pred ccch-----hhhhcccCCccccccccceeeeeeecCCCCeEEee----ccCCeEEEEccC--CceeheeecccccccceE
Confidence 9863 1122211 13456679999955666665 389999999972 33334444 34566699
Q ss_pred EEeecccchhhh
Q 000080 2371 LFLPLKLLNFAL 2382 (2389)
Q Consensus 2371 svA~~~~~~~~~ 2382 (2389)
+++.+|.|.++-
T Consensus 237 ~~~wsPnG~YiA 248 (933)
T KOG1274|consen 237 DLQWSPNGKYIA 248 (933)
T ss_pred EEEEcCCCcEEe
Confidence 999999998753
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-09 Score=129.74 Aligned_cols=147 Identities=18% Similarity=0.264 Sum_probs=116.4
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
..||+++.+|.+..++.|++||.++..+.+.++.... +.+ +-..++|-+|+|+|+|.++|+|+.||.|++||
T Consensus 111 g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~-r~l-------~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 111 GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK-RSL-------MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred cceeEEEeCCccceEEeecCCceEEEEecCCceEEEE-eec-------ccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 5679999999999999999999999999988875432 111 12358899999999999999999999999999
Q ss_pred CCCCCccCccc-ceeeee----cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2300 LEVGGRSNVRP-MESCLC----FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2300 l~tggrs~~k~-l~tl~g----Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
+.++. .. +. ...+.+ -...|++|.|-. | ..||+| -.-|+|+.||. .+++.++++.+|.+.|.|+|.
T Consensus 183 ~~~~~-t~-~~~~~~~d~l~k~~~~iVWSv~~Lr-d-~tI~sg---DS~G~V~FWd~--~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 183 VKSGQ-TL-HIITMQLDRLSKREPTIVWSVLFLR-D-STIASG---DSAGTVTFWDS--IFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred cCCCc-eE-EEeeecccccccCCceEEEEEEEee-c-CcEEEe---cCCceEEEEcc--cCcchhhhhhhhhcceeEEEE
Confidence 99873 11 10 011111 345789999997 6 457775 24589999997 578889999999999999999
Q ss_pred cccchhhhc
Q 000080 2375 LKLLNFALS 2383 (2389)
Q Consensus 2375 ~~~~~~~~s 2383 (2389)
.+++|+..|
T Consensus 254 ~~~~d~vfs 262 (691)
T KOG2048|consen 254 ADNEDRVFS 262 (691)
T ss_pred cCCCCeEEE
Confidence 999887665
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-09 Score=126.09 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=108.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
..|+|+++|..+++|+.||++|+||+.+-..+... + .|...|..+.|||||++||+-+.| ..++||+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e---~-------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE---I-------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh---H-------hhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 67899999999999999999999998655544333 1 355899999999999999999999 999999999
Q ss_pred CCc----c----------------C----cc------c---c-----eeeee-----------cCCCeeEEEEecCCCCE
Q 000080 2303 GGR----S----------------N----VR------P---M-----ESCLC-----------FSSHAMDVSYITSSGSV 2333 (2389)
Q Consensus 2303 ggr----s----------------~----~k------~---l-----~tl~g-----------Hs~~V~sVAFSP~DGsl 2333 (2389)
|-. . + ++ + + ..+.+ --..|++++.+. ||++
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf 295 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKF 295 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcE
Confidence 710 0 0 00 0 0 00000 013688999999 9999
Q ss_pred EEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecCcEEEEeecccchhhhc
Q 000080 2334 IAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2334 LASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~~V~svA~~~~~~~~~s 2383 (2389)
+|-| +.||.|-|.++. .=++++-. +.|..-|+.|.++|+-+.-.|
T Consensus 296 ~AlG---T~dGsVai~~~~--~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 296 LALG---TMDGSVAIYDAK--SLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred EEEe---ccCCcEEEEEec--eeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 9986 589999999972 22333332 669999999999999876554
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-09 Score=121.59 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=112.3
Q ss_pred EEEEEcC--CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEee
Q 000080 2223 RAFSSHP--LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2223 rsVAFsP--dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWD 2299 (2389)
.+=+|+| ||..+++. .|++++.||+++.++..... .+ |...|+.+-|+|+- ..||||++||.||+||
T Consensus 174 tsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~--dA-------Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD 243 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE--DA-------HGQRVRDLDFNPNKQHILVTCGDDGYVRIWD 243 (370)
T ss_pred cccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh--hh-------hcceeeeccCCCCceEEEEEcCCCccEEEEe
Confidence 3447888 78888875 68999999999888766654 22 56889999999996 6899999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCC--------------------------
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA-------------------------- 2353 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~-------------------------- 2353 (2389)
.+... .|++++.+|+.+|++|.|+|.-.++|.|+ +.|..|-||-...
T Consensus 244 ~R~tk----~pv~el~~HsHWvW~VRfn~~hdqLiLs~---~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k 316 (370)
T KOG1007|consen 244 TRKTK----FPVQELPGHSHWVWAVRFNPEHDQLILSG---GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK 316 (370)
T ss_pred ccCCC----ccccccCCCceEEEEEEecCccceEEEec---CCCceeEEEeccccccccccccccccccCcchhhHHhcc
Confidence 99753 68999999999999999999767899986 4889999998511
Q ss_pred -CCCCceEEEEeecCcEEEEeecccc
Q 000080 2354 -PPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2354 -~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
-+...++++..|++.|+++|-|---
T Consensus 317 pL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 317 PLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred cccccccccccccccceEEEeeccCC
Confidence 0122356788899999998866533
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-08 Score=121.34 Aligned_cols=145 Identities=15% Similarity=0.212 Sum_probs=113.5
Q ss_pred ccccceeeccccccccccccc----cCCCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce-eeEecccCCC
Q 000080 2191 YAGIGASALGWETQDDFEDYV----DPPATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-TATYGVLPAA 2263 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~----d~~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~-l~Tl~vl~gh 2263 (2389)
.+.+--+. +||.+.|+.+|. +.+.+. +++...++.|+.+.+.++.|..=|...+||.+++.. ..-++
T Consensus 246 n~s~i~ss-SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~----- 319 (498)
T KOG4328|consen 246 NTSQIYSS-SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR----- 319 (498)
T ss_pred Chhheeee-ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-----
Confidence 44444555 899999999885 445555 456778899999999888888878999999998764 22222
Q ss_pred CCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC
Q 000080 2264 NVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~ 2342 (2389)
=|...|++|+|+|.- ..|||||.|+|+||||++.-+ ....|+.....|...|.++.|||.+|+ |+|. +.
T Consensus 320 -----lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT---~~ 389 (498)
T KOG4328|consen 320 -----LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR-GKASPFLSTLPHRRSVNSAYFSPSGGT-LLTT---CQ 389 (498)
T ss_pred -----hhhcccceeecCCCCchheeecccCcceeeeehhhhc-CCCCcceecccccceeeeeEEcCCCCc-eEee---cc
Confidence 156789999999996 799999999999999998742 111256777789999999999996666 7776 48
Q ss_pred CCeEEEeeC
Q 000080 2343 GINVVVWDT 2351 (2389)
Q Consensus 2343 D~TVrLWD~ 2351 (2389)
|.+|||||.
T Consensus 390 D~~IRv~ds 398 (498)
T KOG4328|consen 390 DNEIRVFDS 398 (498)
T ss_pred CCceEEeec
Confidence 999999996
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-08 Score=112.89 Aligned_cols=255 Identities=14% Similarity=0.195 Sum_probs=152.2
Q ss_pred ccccCCCCCCCCCCC-CCcccccccc-cccCCCCCCCcceeec--CCCCCCeEEEEec-----CCcEEEEeCCCCccccc
Q 000080 7 GCSLQNANPCVDPTE-HLPLAFLRSE-FIPTAPTRSTSTIDWL--PDFAGYSWVAYGA-----SSLLVISHFPSPLSQEE 77 (2389)
Q Consensus 7 ~~~~~~~~~~~~~~~-~lpl~~~~~~-~ip~ap~~~~~ai~wl--pD~~G~~~vAYas-----g~~vVI~~l~SP~~~~e 77 (2389)
+--.|+..++.+|++ .+|....+.+ ++.=---=..-++.|+ ||. . .++|.|+ .-.|=|+.|++- +-|
T Consensus 11 ~i~~q~~~~~~s~i~~~~~~~~~r~~eiy~Y~ap~~lya~~Ws~~~~~-~-~rla~gS~~Ee~~Nkvqiv~ld~~--s~e 86 (364)
T KOG0290|consen 11 HIQDQQGRTYSSPIQRSSPEGNPRRKEIYTYNAPWPLYAMNWSVRPDK-K-FRLAVGSFIEEYNNKVQIVQLDED--SGE 86 (364)
T ss_pred hhhhhhccccCCcccccCcccCcccceEEEecCCCceeeeccccCCCc-c-eeEEEeeeccccCCeeEEEEEccC--CCc
Confidence 334567777888854 3455544443 3322222345688998 663 3 5899884 334555565531 112
Q ss_pred ccccccceeeeeccCCCCCeeEEEEcCCCC-CCCcEEEecCCeEEEEeeCCCCCCCCccceeeEEec------ccceEEE
Q 000080 78 ALIGPIFRQVFALSDNSLPVTSISWSPETP-SIGQLAAASENCIFVFAHDSASSKGSFCWSQNAILV------QGTKVEA 150 (2389)
Q Consensus 78 ~~~~p~~~Qviegh~d~~dVk~VaWSPd~~-~~GeIaASyDntIRVw~~d~~~~kgd~~W~~~~tL~------hssTV~s 150 (2389)
.+.- .. -+|.++|+.+-|.|++- ..-+++|++++..|+|+-..+ +-.-.+...|. +...+.+
T Consensus 87 ~~~~----a~---fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~e----e~~~~~~~~L~~~kns~~~aPlTS 155 (364)
T KOG0290|consen 87 LVED----AN---FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDE----ESRVELQSVLNNNKNSEFCAPLTS 155 (364)
T ss_pred eecc----CC---CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCc----CCceehhhhhccCcccccCCcccc
Confidence 2200 11 14458999999999721 112688988899999986521 11223333332 3567888
Q ss_pred EeecCCC-CeEEEEecc--eEEeeccCC-cEEEEEEeeccccceEEEEeecCCCc--eEeeecccc---cccC-------
Q 000080 151 IEWTGSG-DGIVAGGME--TVLWKKKNT-LWEIAWKFKENYPQNLVSATWSIEGP--SATAASMSQ---LDLL------- 214 (2389)
Q Consensus 151 IAWSpdG-~rLaSggdD--V~IW~~~~s-~Wecvwt~~~~~~~~ivsvaWSpdG~--fATag~dik---f~~~------- 214 (2389)
..|+--- ++|.++|-| ..||+...+ ....-.++ -.|...+|+++|+..|. |||+|+|.. |...
T Consensus 156 FDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL-IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI 234 (364)
T KOG0290|consen 156 FDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL-IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI 234 (364)
T ss_pred cccccCCcceeEeecccCeEEEEEEeeccccceeeEE-EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE
Confidence 8998644 566688887 679997665 22222222 24667889999999776 999999554 4332
Q ss_pred --CCCCCCceeEEEe---------------------eCCCccce--eecccCCCCeeEEEeccCCCCCCCCCCccccCce
Q 000080 215 --GPKEAGKCVFICC---------------------SDGKSEYI--KLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHV 269 (2389)
Q Consensus 215 --~~~~~~kpV~V~~---------------------~dg~~~~~--~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nI 269 (2389)
+.++.+.|..-.. -|-..... .....|..+||+|+|.|. .++.
T Consensus 235 IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh------------S~~h 302 (364)
T KOG0290|consen 235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH------------SSSH 302 (364)
T ss_pred EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC------------CCce
Confidence 1122122221100 01011100 124789999999999994 2344
Q ss_pred EEeeecCCeEEEEEeecCCc
Q 000080 270 LLTCCLDGTVRLWCEMDSGK 289 (2389)
Q Consensus 270 LAScSdDgTVRLW~e~d~Gk 289 (2389)
|.||+||-.+-||+....++
T Consensus 303 ictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 303 ICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred eeecCCcceEEEEecccccc
Confidence 99999999999999875433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-09 Score=137.17 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=128.1
Q ss_pred ccceeeccccccccccccccC--------CCC--cCceeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccC
Q 000080 2193 GIGASALGWETQDDFEDYVDP--------PAT--VENISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLP 2261 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~--------~at--v~ni~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~ 2261 (2389)
|+.|.| +-|..+.+++-... +++ .+...|+.+.|+|.+. +||||++||.|-|||+.+-+.-.++
T Consensus 81 GlIaGG-~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~---- 155 (1049)
T KOG0307|consen 81 GLIAGG-LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP---- 155 (1049)
T ss_pred ceeecc-ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC----
Confidence 455555 55556666654321 122 2346889999999877 9999999999999999875543333
Q ss_pred CCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCC--CeeEEEEecCCCCEEEEee
Q 000080 2262 AANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS--HAMDVSYITSSGSVIAAAG 2338 (2389)
Q Consensus 2262 gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~--~V~sVAFSP~DGslLASAG 2338 (2389)
+ . ....+.|.+|+++-. .+.||||+.+|++-+||++.. +++..+.-|.+ .+..++|+|++.+.|++|.
T Consensus 156 ~-~---~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-----~pii~ls~~~~~~~~S~l~WhP~~aTql~~As 226 (1049)
T KOG0307|consen 156 G-S---QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-----KPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS 226 (1049)
T ss_pred C-C---CCCcccceEeccchhhhHHhhccCCCCCceeccccCC-----CcccccccCCCccceeeeeeCCCCceeeeeec
Confidence 1 1 112378999999966 589999999999999999863 46655555554 5779999998777787764
Q ss_pred cCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc-hhhhc
Q 000080 2339 HSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL-NFALS 2383 (2389)
Q Consensus 2339 ~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~-~~~~s 2383 (2389)
-+-.+-.|++||+..+ ...++.+++|+-+|.+++-.+.+ +..||
T Consensus 227 ~dd~~PviqlWDlR~a-ssP~k~~~~H~~GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 227 GDDSAPVIQLWDLRFA-SSPLKILEGHQRGILSLSWCPQDPRLLLS 271 (1049)
T ss_pred CCCCCceeEeeccccc-CCchhhhcccccceeeeccCCCCchhhhc
Confidence 2223346999998533 34589999999999999999998 55554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-09 Score=130.33 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=95.2
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCC------C--ceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGK------D--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~t------G--k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D 2292 (2389)
.||+++|||..+-|++++.|++|++|++.. + +.+.||+ ||.+.|-||+.++.|+.+-||+.|
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr----------aH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR----------AHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe----------cccCceEEEEecCCceEEEeeccC
Confidence 359999999999999999999999999931 1 2356664 578999999999999999999999
Q ss_pred CcEEEeeCCCCCc---cC--cccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2293 GTVCTWQLEVGGR---SN--VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2293 gTVkLWDl~tggr---s~--~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
|+||.|++-.... +. .....++.||...|+.++||+ .-..|++. |.|+|||+|+..
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llsc---s~DgTvr~w~~~ 426 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSC---SSDGTVRLWEPT 426 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeee---cCCceEEeeccC
Confidence 9999996642110 00 012356899999999999998 66778885 689999999973
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.3e-09 Score=128.82 Aligned_cols=163 Identities=16% Similarity=0.221 Sum_probs=118.1
Q ss_pred cccCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEE
Q 000080 2210 YVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFAS 2288 (2389)
Q Consensus 2210 ~~d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LAS 2288 (2389)
|.++.++-+- |-.+.|-|-.-.|++++.|.|||+||+.+++++..- + ..||...|.+++|.|+. ..|++
T Consensus 93 lk~~~aH~nA--ifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~-------~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 93 LKKPLAHKNA--IFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-L-------NLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred hcccccccce--eEeeccCCCceeEEEccCCceeeeeeeccceeecce-e-------ecccccccchhhhccCCCcceee
Confidence 4566666543 489999994447999999999999999999887651 1 13788999999999987 79999
Q ss_pred EeCCCcEEEeeCCCCCc-------------cC-----c----ccceeeeecCCCeeE---EEEecCCCCEEEEeecCCCC
Q 000080 2289 AALDGTVCTWQLEVGGR-------------SN-----V----RPMESCLCFSSHAMD---VSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2289 gS~DgTVkLWDl~tggr-------------s~-----~----k~l~tl~gHs~~V~s---VAFSP~DGslLASAG~sS~D 2343 (2389)
|+.||.|.|||++..+. -+ . +.+.....|+..+.+ |.|.. |...||||| ..|
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSag--a~D 239 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAG--AAD 239 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeecc--CCC
Confidence 99999999999975320 00 0 112233456666776 77777 889999987 579
Q ss_pred CeEEEeeCCCCCC----Cc--eEEEEee---cCcEEEEeecccchhhhccc
Q 000080 2344 INVVVWDTLAPPT----SS--RASITCH---EGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg----~~--v~sL~GH---~~~V~svA~~~~~~~~~s~~ 2385 (2389)
++||+||+..+.. +. +..+..| .-++.++...-.|.+.+-.|
T Consensus 240 ~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 240 STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 9999999853211 11 2233334 45677888888888877666
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=122.76 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=117.8
Q ss_pred ccccccccccccccC-CCCcC-----ceeEEEEEEcCC--CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC
Q 000080 2199 LGWETQDDFEDYVDP-PATVE-----NISTRAFSSHPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA 2270 (2389)
Q Consensus 2199 ~~~d~~~~~~~~~d~-~atv~-----ni~VrsVAFsPd--G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH 2270 (2389)
+.|..++-+.+..+. ++.+. ..+|..+-..+- ..+|+|+|.|.|||+||+..|..+.++. + |
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-f-----p---- 217 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-F-----P---- 217 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-c-----C----
Confidence 456666655555432 11111 135666655554 4589999999999999999999888864 1 1
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCC--c---------cCcccceeeeecCC--CeeEEEEecCCCCEEEEe
Q 000080 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGG--R---------SNVRPMESCLCFSS--HAMDVSYITSSGSVIAAA 2337 (2389)
Q Consensus 2271 ~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tgg--r---------s~~k~l~tl~gHs~--~V~sVAFSP~DGslLASA 2337 (2389)
..+.+|+.+|-++.+-.|+.||.|.+-++..-. + .....+..+.||.+ .|++++++- ||++|+||
T Consensus 218 -~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSG 295 (476)
T KOG0646|consen 218 -SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSG 295 (476)
T ss_pred -CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEee
Confidence 558999999999999999999988877665421 0 01134566889998 999999999 99999996
Q ss_pred ecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2338 GHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2338 G~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
+.|++|+|||+ ...+|+++++--.+.|+-+..
T Consensus 296 ---d~dg~VcvWdi--~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 296 ---DEDGKVCVWDI--YSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ---CCCCCEEEEec--chHHHHHHHhhhccccceeEe
Confidence 59999999998 466788888766677776665
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-08 Score=117.25 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=93.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.+|.|+|.+..|+.+|+||++|++|+....+...|+ |...+.+.+|-++ ..+++|+.||.||+.|+
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-----------~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-----------HGAPLLDCAFADE-STIVTGGLDGQVRRYDL 82 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-----------cCCceeeeeccCC-ceEEEeccCceEEEEEe
Confidence 46999999999999999999999999998776666664 4577999999985 68999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
+++ +...+.-|...|++|.+++..|.+| || |.|++|++||+.
T Consensus 83 n~~------~~~~igth~~~i~ci~~~~~~~~vI-sg---sWD~~ik~wD~R 124 (323)
T KOG1036|consen 83 NTG------NEDQIGTHDEGIRCIEYSYEVGCVI-SG---SWDKTIKFWDPR 124 (323)
T ss_pred cCC------cceeeccCCCceEEEEeeccCCeEE-Ec---ccCccEEEEecc
Confidence 986 2345567999999999998666666 44 599999999984
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=118.82 Aligned_cols=147 Identities=12% Similarity=0.232 Sum_probs=116.9
Q ss_pred ccccccceeeccccccccccccccCCCCcC----ceeEEEEEEcCCCC---eEEEEeCCCcEEEeecCCCceeeEecccC
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPPATVE----NISTRAFSSHPLRP---FFLVGSSNTHIYLWEFGKDKATATYGVLP 2261 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~atv~----ni~VrsVAFsPdG~---~LASGS~DgTIRLWDl~tGk~l~Tl~vl~ 2261 (2389)
|=.+||-.++ +.|.+-++|+.... .+.. .-.|.+-+++|-.- +||+|-.|-.|||-|+.+|.+..++.
T Consensus 111 P~DtGmFtss-SFDhtlKVWDtnTl-Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--- 185 (397)
T KOG4283|consen 111 PIDTGMFTSS-SFDHTLKVWDTNTL-QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--- 185 (397)
T ss_pred eecCceeecc-cccceEEEeecccc-eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec---
Confidence 6678888999 99999999987422 1111 02457778888543 89999999999999999999999984
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC-EEEEEeCCCcEEEeeCCCC-Cc------c---CcccceeeeecCCCeeEEEEecCC
Q 000080 2262 AANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQLEVG-GR------S---NVRPMESCLCFSSHAMDVSYITSS 2330 (2389)
Q Consensus 2262 gh~~p~~GH~~~V~sVaFSPDG~-~LASgS~DgTVkLWDl~tg-gr------s---~~k~l~tl~gHs~~V~sVAFSP~D 2330 (2389)
||.+.|.+|.+||... .||+||.||+|||||++.. +. . .+..+++-..|.+.|+++||.. |
T Consensus 186 -------GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d 257 (397)
T KOG4283|consen 186 -------GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-D 257 (397)
T ss_pred -------cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-c
Confidence 6789999999999975 7899999999999999864 10 0 1122344567889999999999 9
Q ss_pred CCEEEEeecCCCCCeEEEeeC
Q 000080 2331 GSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2331 GslLASAG~sS~D~TVrLWD~ 2351 (2389)
|..+++.| .|.-+|+|+.
T Consensus 258 ~~~l~~~g---td~r~r~wn~ 275 (397)
T KOG4283|consen 258 ARYLASCG---TDDRIRVWNM 275 (397)
T ss_pred chhhhhcc---CccceEEeec
Confidence 99999976 6778999997
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=118.55 Aligned_cols=156 Identities=16% Similarity=0.271 Sum_probs=110.2
Q ss_pred CCeeEEEEcCCCCCCC-cEEE-ecCCeEEEEeeCC-CCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc--eE
Q 000080 95 LPVTSISWSPETPSIG-QLAA-ASENCIFVFAHDS-ASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME--TV 168 (2389)
Q Consensus 95 ~dVk~VaWSPd~~~~G-eIaA-SyDntIRVw~~d~-~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD--V~ 168 (2389)
.+|-.|.+++. .+ .+|. +.|+.||+|.... ...+++-.=.-.++|. |+..|..|.|+|+|+.||||||+ +.
T Consensus 14 ~pv~s~dfq~n---~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVDFQKN---SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred CceEEEEeccC---cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 69999999995 33 5663 4689999998762 2223321222244554 89999999999999999999998 88
Q ss_pred Eeecc--------------CCcEEEEEEeeccccceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCcc
Q 000080 169 LWKKK--------------NTLWEIAWKFKENYPQNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSE 233 (2389)
Q Consensus 169 IW~~~--------------~s~Wecvwt~~~~~~~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~ 233 (2389)
+|+.. ...|...=.+.+ |...+|+.+|+||+. +++++.|. .+..|.. ....
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dn------------s~~l~Dv-~~G~ 156 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDN------------SVRLWDV-HAGQ 156 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccc------------eEEEEEe-ccce
Confidence 99965 344664322343 667899999999999 88888873 3444432 2333
Q ss_pred ceeecccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEE
Q 000080 234 YIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVR 280 (2389)
Q Consensus 234 ~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVR 280 (2389)
.......|...|++|+|-|- .++ ++|=|-|.-.+
T Consensus 157 l~~~~~dh~~yvqgvawDpl--------~qy-----v~s~s~dr~~~ 190 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPL--------NQY-----VASKSSDRHPE 190 (434)
T ss_pred eEeeccccccccceeecchh--------hhh-----hhhhccCcccc
Confidence 56677899999999999993 233 56666776333
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-09 Score=126.88 Aligned_cols=92 Identities=14% Similarity=0.238 Sum_probs=79.3
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|...+|+|||++||+-|+||.+||+|+.+-+++..++.. -+...+|++||||+++|+|++|.-|.+|.+
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY----------FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY----------FGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh----------ccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 4466799999999999999999999999877766544321 155899999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEe
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYI 2327 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFS 2327 (2389)
... +.+..-+||..+|+.|||.
T Consensus 362 ~er-----RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 362 EER-----RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ccc-----eEEEeccccccceeeEeec
Confidence 864 5677789999999999998
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-09 Score=123.22 Aligned_cols=114 Identities=18% Similarity=0.297 Sum_probs=91.2
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc-eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk-~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
.+.+|+|+|.+-.+++|++|..++.+|++.=+ .+..+ .+|.+.|.+|.|||-|+-|+|||-|.||||+.
T Consensus 231 RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~----------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 231 RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH----------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred cccceecCccccceeeccccccceehhhhhhcccchhh----------cccceeEEEeccCCCcchhccccccceEEEee
Confidence 55678999999999999999999999996432 22322 26779999999999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
++.+. | +.++- .---..|.+|.||- |.++|.|| |+|++||||...
T Consensus 301 ~~~~~-S--RdiYh-tkRMq~V~~Vk~S~-Dskyi~SG---Sdd~nvRlWka~ 345 (433)
T KOG0268|consen 301 VNHGH-S--RDIYH-TKRMQHVFCVKYSM-DSKYIISG---SDDGNVRLWKAK 345 (433)
T ss_pred cCCCc-c--hhhhh-HhhhheeeEEEEec-cccEEEec---CCCcceeeeecc
Confidence 99762 2 22210 00114788999999 88999985 799999999963
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.2e-08 Score=115.05 Aligned_cols=155 Identities=16% Similarity=0.420 Sum_probs=126.2
Q ss_pred CeeEEEEcCCCCCCCcEEEec-CCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc--eEEee
Q 000080 96 PVTSISWSPETPSIGQLAAAS-ENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME--TVLWK 171 (2389)
Q Consensus 96 dVk~VaWSPd~~~~GeIaASy-DntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD--V~IW~ 171 (2389)
+++|-||++| ...||.+. .+-|-||+-. +..-|....+|. |...|..|.|+|.++||++|+-| --+|.
T Consensus 12 pitchAwn~d---rt~iAv~~~~~evhiy~~~-----~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 12 PITCHAWNSD---RTQIAVSPNNHEVHIYSML-----GADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred ceeeeeecCC---CceEEeccCCceEEEEEec-----CCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 8999999999 77788775 4689999987 232499999996 89999999999999999999998 77999
Q ss_pred c-cCCcEEEEEEeeccccceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCcccee---ecccCCCCee
Q 000080 172 K-KNTLWEIAWKFKENYPQNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIK---LELCHPQPVS 246 (2389)
Q Consensus 172 ~-~~s~Wecvwt~~~~~~~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~---ve~aH~qdVn 246 (2389)
. ..++|+-.--+ ..+.+-.-+|.|||.+. ||++++... +-|||+.++..... +...|-..|.
T Consensus 84 ~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~------------isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 84 QPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARL------------ISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred cCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccE------------EEEEEEecccceehhhhhCCcccccee
Confidence 7 78899876544 35667777899999877 999999633 45777766665533 4577889999
Q ss_pred EEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEe
Q 000080 247 MVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCE 284 (2389)
Q Consensus 247 ~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e 284 (2389)
++.|+| ..=+||.+|-|+-+|+..-
T Consensus 151 sldWhp-------------nnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 151 SLDWHP-------------NNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred eeeccC-------------CcceecccccCcceeEEEE
Confidence 999999 3446899999999999973
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.2e-09 Score=123.27 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=123.1
Q ss_pred ccccccccc--cCCCCcCc--eeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEE
Q 000080 2203 TQDDFEDYV--DPPATVEN--ISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISAL 2277 (2389)
Q Consensus 2203 ~~~~~~~~~--d~~atv~n--i~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sV 2277 (2389)
+...+|+.. .|+.+... -.|.+|.|+|.-. +|++++.|++|.|+|.++++.++.... .-.-..|
T Consensus 167 e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-----------~mRTN~I 235 (433)
T KOG0268|consen 167 EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-----------TMRTNTI 235 (433)
T ss_pred ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-----------eccccce
Confidence 445556553 44444332 2458999999866 788888999999999999988765421 1234789
Q ss_pred EECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCC
Q 000080 2278 QFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS 2357 (2389)
Q Consensus 2278 aFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~ 2357 (2389)
+|+|.+--|.+|++|..+.+.|++.- .+|+..+.+|...|.+|+||| .|+-++|| |-|++|||+.+...+..
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l----~~p~~v~~dhvsAV~dVdfsp-tG~Efvsg---syDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNL----SRPLNVHKDHVSAVMDVDFSP-TGQEFVSG---SYDKSIRIFPVNHGHSR 307 (433)
T ss_pred ecCccccceeeccccccceehhhhhh----cccchhhcccceeEEEeccCC-Ccchhccc---cccceEEEeecCCCcch
Confidence 99999999999999999999999864 278889999999999999999 99999996 68999999998543333
Q ss_pred ceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2358 SRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2358 ~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.+.- .--...|.||..|-|-.|++|-
T Consensus 308 diYh-tkRMq~V~~Vk~S~Dskyi~SG 333 (433)
T KOG0268|consen 308 DIYH-TKRMQHVFCVKYSMDSKYIISG 333 (433)
T ss_pred hhhh-HhhhheeeEEEEeccccEEEec
Confidence 2210 0012347788888888888774
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-08 Score=115.76 Aligned_cols=183 Identities=11% Similarity=0.117 Sum_probs=134.7
Q ss_pred CCccccCccccccccccccceeeccccccccccccccCCCCcC---ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc
Q 000080 2176 PGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPATVE---NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK 2252 (2389)
Q Consensus 2176 ~~~~~~~~~~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~atv~---ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk 2252 (2389)
||++..--.-|+ +-...++|+- ||..-++-++......+. .-++-..+|.+ -..+++|+.||.||+.|+.++.
T Consensus 11 pP~d~IS~v~f~-~~~~~LLvss--WDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 11 PPEDGISSVKFS-PSSSDLLVSS--WDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred CChhceeeEEEc-CcCCcEEEEe--ccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 444443334566 6666677765 999999887742222211 24678899999 4568889999999999998887
Q ss_pred eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCC---------Cc------------------
Q 000080 2253 ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVG---------GR------------------ 2305 (2389)
Q Consensus 2253 ~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tg---------gr------------------ 2305 (2389)
..... -|...|++|.+++--..+.|||+|++|++||.+.. ++
T Consensus 87 ~~~ig-----------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r 155 (323)
T KOG1036|consen 87 EDQIG-----------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDR 155 (323)
T ss_pred ceeec-----------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCc
Confidence 54432 25688999999999999999999999999999831 00
Q ss_pred -----------------------------------------------------c--CcccceeeeecC---------CCe
Q 000080 2306 -----------------------------------------------------S--NVRPMESCLCFS---------SHA 2321 (2389)
Q Consensus 2306 -----------------------------------------------------s--~~k~l~tl~gHs---------~~V 2321 (2389)
+ ....-+.+.||. .+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 0 001123345554 478
Q ss_pred eEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2322 MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2322 ~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
++++|+| --..+|||| .||-|-+||. .+.+.+..|..-++.|.++|++-+|-
T Consensus 236 Nai~Fhp-~~~tfaTgG---sDG~V~~Wd~--~~rKrl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 236 NAIAFHP-IHGTFATGG---SDGIVNIWDL--FNRKRLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred ceeEecc-ccceEEecC---CCceEEEccC--cchhhhhhccCCCCceEEEEeccCCC
Confidence 9999999 457799986 8999999998 46677888888888899999998884
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=111.81 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=105.5
Q ss_pred eeeccccccc------cccccccCCCC--cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2196 ASALGWETQD------DFEDYVDPPAT--VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2196 Asg~~~d~~~------~~~~~~d~~at--v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
..|.-|++-+ ++|+...|-++ ++-..|.++...|..+-|+.++.|+.++.||+++|+..++|+
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------- 153 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------- 153 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc---------
Confidence 4455565544 46665444333 233466999999988877788899999999999999999996
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceee------eec-CCCeeEEEEecCCCCEEEEeecC
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC------LCF-SSHAMDVSYITSSGSVIAAAGHS 2340 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl------~gH-s~~V~sVAFSP~DGslLASAG~s 2340 (2389)
||+++|.+|+--.-.-.+.||++|||||+||++|+. +.+.+... +.| ..+|-+++-+. .+|++|
T Consensus 154 -GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k--~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG--- 224 (325)
T KOG0649|consen 154 -GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK--HVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG--- 224 (325)
T ss_pred -CCcceeeeeeecccCcceeecCCCccEEEEeccccc--eeEEeccccChhhcCcccCceeEEEeccC---ceEEec---
Confidence 688999999994444468899999999999999973 22222211 112 24555666554 789886
Q ss_pred CCCCeEEEeeCCCCCCCceEEEEeec
Q 000080 2341 SNGINVVVWDTLAPPTSSRASITCHE 2366 (2389)
Q Consensus 2341 S~D~TVrLWD~l~~tg~~v~sL~GH~ 2366 (2389)
.+...-||.+...+..|+-.+.+|.
T Consensus 225 -gGp~lslwhLrsse~t~vfpipa~v 249 (325)
T KOG0649|consen 225 -GGPKLSLWHLRSSESTCVFPIPARV 249 (325)
T ss_pred -CCCceeEEeccCCCceEEEecccce
Confidence 4678999998544434444445443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-08 Score=123.62 Aligned_cols=139 Identities=12% Similarity=0.032 Sum_probs=98.1
Q ss_pred eEEEEEEcCCCCeEEEEeCC---CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CCCcEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVC 2296 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~D---gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~DgTVk 2296 (2389)
.+.+.+|||||+.||.+|.+ .+|++||+.+|+.... ..++ || ..+++|||||++||.++ .||.++
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~-------g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR-------GH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC-------Cc---cCceeECCCCCEEEEEEecCCcEE
Confidence 45788999999999998754 4799999988864322 1112 22 34689999999999875 688877
Q ss_pred Ee--eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2297 TW--QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2297 LW--Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
|| |+.++ ....+..|...+.+.+|+| ||+.|+.++ ..++.++||++... +.....+ +|.+ .+.++
T Consensus 274 Iy~~d~~~~------~~~~lt~~~~~~~~~~wSp-DG~~i~f~s--~~~g~~~I~~~~~~-~~~~~~l-~~~~--~~~~~ 340 (429)
T PRK01742 274 IYVMGANGG------TPSQLTSGAGNNTEPSWSP-DGQSILFTS--DRSGSPQVYRMSAS-GGGASLV-GGRG--YSAQI 340 (429)
T ss_pred EEEEECCCC------CeEeeccCCCCcCCEEECC-CCCEEEEEE--CCCCCceEEEEECC-CCCeEEe-cCCC--CCccC
Confidence 76 55543 2345566777788999999 999888753 46788999997422 2333333 4544 46788
Q ss_pred cccchhhhc
Q 000080 2375 LKLLNFALS 2383 (2389)
Q Consensus 2375 ~~~~~~~~s 2383 (2389)
+|+|++++.
T Consensus 341 SpDG~~ia~ 349 (429)
T PRK01742 341 SADGKTLVM 349 (429)
T ss_pred CCCCCEEEE
Confidence 999988653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-09 Score=135.23 Aligned_cols=109 Identities=16% Similarity=0.291 Sum_probs=99.1
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.++.|...|.++++||+|..||+|-..++.|+.+.+ ||.+.++.++-+...-++|++|.|..||+|-+
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r----------Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR----------GHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccchhhhccCC----------CCccccchhccchhhhhhhhcccCceEEEEec
Confidence 35899999999999999999999999999999998874 68899999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
.++ .|+.-++||++.|++++|+| .+++ ++|+|+++||..
T Consensus 262 ~~~-----~pvsvLrghtgavtaiafsP-----~~ss---s~dgt~~~wd~r 300 (1113)
T KOG0644|consen 262 PDG-----APVSVLRGHTGAVTAIAFSP-----RASS---SDDGTCRIWDAR 300 (1113)
T ss_pred CCC-----chHHHHhccccceeeeccCc-----cccC---CCCCceEecccc
Confidence 987 47888999999999999999 3343 699999999973
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.3e-08 Score=113.41 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=112.5
Q ss_pred CCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc
Q 000080 2215 ATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2389)
Q Consensus 2215 atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT 2294 (2389)
.|+++....++.|++.|.+||.|-.||.|-|||+.|-..-+++ .+|...|+++++|+||++|.|+|.|..
T Consensus 19 ~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l----------saH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 19 HTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML----------SAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred eeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhh----------hccccceeEEEecCCCCEeeeecCCce
Confidence 3455555678899999999999999999999999866644444 257788999999999999999999999
Q ss_pred EEEeeCCCCCcc----CcccceeeeecCCC-------------------------------------eeEEEEecCCCCE
Q 000080 2295 VCTWQLEVGGRS----NVRPMESCLCFSSH-------------------------------------AMDVSYITSSGSV 2333 (2389)
Q Consensus 2295 VkLWDl~tggrs----~~k~l~tl~gHs~~-------------------------------------V~sVAFSP~DGsl 2333 (2389)
|++||+..|..- -..|+...+-|... .....|.+ .|++
T Consensus 89 i~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~y 167 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKY 167 (405)
T ss_pred eEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCE
Confidence 999999887310 00011111111110 01122555 6888
Q ss_pred EEEeecCCCCCeEEEeeCCCCCCCceEEEEeec-CcEEEEeecccchhhhccc
Q 000080 2334 IAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-GLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2334 LASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~-~~V~svA~~~~~~~~~s~~ 2385 (2389)
|.+| ..-|.+-+.|. .+-+|++++.--+ ..|..+-++-.|+|.+-.|
T Consensus 168 IitG---tsKGkllv~~a--~t~e~vas~rits~~~IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 168 IITG---TSKGKLLVYDA--ETLECVASFRITSVQAIKQIIVSRKGRFLIINT 215 (405)
T ss_pred EEEe---cCcceEEEEec--chheeeeeeeechheeeeEEEEeccCcEEEEec
Confidence 8874 46778888886 5668888886555 7788899999999887655
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=116.54 Aligned_cols=141 Identities=18% Similarity=0.130 Sum_probs=101.2
Q ss_pred eEEEEEEcCCCCeEEEEeC---CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE-EEeCCCc--
Q 000080 2221 STRAFSSHPLRPFFLVGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGT-- 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~---DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA-SgS~DgT-- 2294 (2389)
.+.+.+|+|||+.|+..+. +.+|++||+.+|+... +. . +.+.+.+.+|||||+.|| +.+.|+.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~---~-------~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG---N-------FPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee---c-------CCCcccCcEECCCCCEEEEEEecCCCce
Confidence 4588899999999988774 5789999998887532 21 1 124567889999999876 5566666
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
|.+||++++. ...+..|.....+.+|+| ||+.||.++....+..|.+||+ .+..++.+..+.+.+...+.
T Consensus 272 Iy~~d~~~~~------~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~---~g~~~~~lt~~~~~~~~~~~ 341 (435)
T PRK05137 272 IYTMDLRSGT------TTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNA---DGSNPRRISFGGGRYSTPVW 341 (435)
T ss_pred EEEEECCCCc------eEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEEC---CCCCeEEeecCCCcccCeEE
Confidence 6666887652 344555666677899999 9999987631112235777775 34556677666677778889
Q ss_pred cccchhhh
Q 000080 2375 LKLLNFAL 2382 (2389)
Q Consensus 2375 ~~~~~~~~ 2382 (2389)
+|+|++++
T Consensus 342 SpdG~~ia 349 (435)
T PRK05137 342 SPRGDLIA 349 (435)
T ss_pred CCCCCEEE
Confidence 99999875
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=116.94 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=103.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC--EEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH--RFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~--~LASgS~DgTVkLW 2298 (2389)
.||+|+.+|.|.+|||||+|||||||++.+|+|+++.+. .+.|++|+|+|.++ .||.|-+ +.+-|-
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-----------d~~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-----------DSEIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-----------cceeEEEEecCCCCceeEEEEec-CceEEe
Confidence 689999999999999999999999999999999999852 25699999999985 4444444 335555
Q ss_pred eCCCCCc--------------------------------cCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeE
Q 000080 2299 QLEVGGR--------------------------------SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2389)
Q Consensus 2299 Dl~tggr--------------------------------s~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TV 2346 (2389)
|..-|.+ +..+-+.....|.+.|++|.|+. .|.+|||.-..+..+.|
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSV 548 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceE
Confidence 4433311 00111234456889999999999 99999998655566789
Q ss_pred EEeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2347 VVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2347 rLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
-|.++-. ....-.|.--.+-|.++.|+|.--
T Consensus 549 liHQLSK--~~sQ~PF~kskG~vq~v~FHPs~p 579 (733)
T KOG0650|consen 549 LIHQLSK--RKSQSPFRKSKGLVQRVKFHPSKP 579 (733)
T ss_pred EEEeccc--ccccCchhhcCCceeEEEecCCCc
Confidence 9999832 222234444556677788877643
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=112.85 Aligned_cols=139 Identities=15% Similarity=0.212 Sum_probs=106.8
Q ss_pred ceeeccccccccccccccCCCCcCceeEEEEEEcC--CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCC
Q 000080 2195 GASALGWETQDDFEDYVDPPATVENISTRAFSSHP--LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALA 2272 (2389)
Q Consensus 2195 ~Asg~~~d~~~~~~~~~d~~atv~ni~VrsVAFsP--dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~ 2272 (2389)
..+-+.|++...++.|.-++++++.+ .|.. .+..+.||+.||+||+||++.......+. ..++ | ..
T Consensus 51 sv~lyd~~tg~~l~~fk~~~~~~N~v-----rf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~-~~~~--~----~~ 118 (376)
T KOG1188|consen 51 SVRLYDKGTGQLLEEFKGPPATTNGV-----RFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS-WTQQ--S----GT 118 (376)
T ss_pred eEEEEeccchhhhheecCCCCcccce-----EEecCCCCCeeEEeccCCeEEEEEeecchhhhhee-ccCC--C----CC
Confidence 34568899999999999999998765 3433 34469999999999999998765443332 1222 1 14
Q ss_pred CEEEEEECCCCCEEEEEe----CCCcEEEeeCCCCCccCccccee-eeecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2273 SISALQFDHYGHRFASAA----LDGTVCTWQLEVGGRSNVRPMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2273 ~V~sVaFSPDG~~LASgS----~DgTVkLWDl~tggrs~~k~l~t-l~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
.-.+++.+-.++.+|.|. .|-.|.+||++... +++.. ...|...|+.|.|+|.+-++|+|| |-||.|.
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q----q~l~~~~eSH~DDVT~lrFHP~~pnlLlSG---SvDGLvn 191 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ----QLLRQLNESHNDDVTQLRFHPSDPNLLLSG---SVDGLVN 191 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEecccc----chhhhhhhhccCcceeEEecCCCCCeEEee---cccceEE
Confidence 567888888999999987 47889999999742 33433 355999999999999999999996 7999999
Q ss_pred EeeCC
Q 000080 2348 VWDTL 2352 (2389)
Q Consensus 2348 LWD~l 2352 (2389)
|.|+.
T Consensus 192 lfD~~ 196 (376)
T KOG1188|consen 192 LFDTK 196 (376)
T ss_pred eeecC
Confidence 99984
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-07 Score=111.44 Aligned_cols=235 Identities=17% Similarity=0.290 Sum_probs=142.0
Q ss_pred CCCC---CCCCcccc------cccccccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCccccccccccccee
Q 000080 16 CVDP---TEHLPLAF------LRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQ 86 (2389)
Q Consensus 16 ~~~~---~~~lpl~~------~~~~~ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Q 86 (2389)
-+|| ||.||-+- ..-.++=-+|+--+++|+-.|. | +|+|-|+..+.|-.| .=.++ .++ -
T Consensus 369 niDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~--G-~wlasGsdDGtvriW--Ei~Tg-Rcv------r 436 (733)
T KOG0650|consen 369 NIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPS--G-EWLASGSDDGTVRIW--EIATG-RCV------R 436 (733)
T ss_pred cCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCC--c-ceeeecCCCCcEEEE--Eeecc-eEE------E
Confidence 3554 77777543 2334455678888899988774 8 699999999999999 32222 233 2
Q ss_pred eeeccCCCCCeeEEEEcCCCCCCCcEEEecCCeEEEEeeC-C-------------------CCCCCCccceee-------
Q 000080 87 VFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAHD-S-------------------ASSKGSFCWSQN------- 139 (2389)
Q Consensus 87 viegh~d~~dVk~VaWSPd~~~~GeIaASyDntIRVw~~d-~-------------------~~~kgd~~W~~~------- 139 (2389)
.++.- ..|.||+|+|. +...-|||++++++-|-.+. . ..+..-..|...
T Consensus 437 ~~~~d---~~I~~vaw~P~-~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~ 512 (733)
T KOG0650|consen 437 TVQFD---SEIRSVAWNPL-SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEK 512 (733)
T ss_pred EEeec---ceeEEEEecCC-CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhcc
Confidence 22222 25999999995 44445667888776555431 0 000111256543
Q ss_pred ---EEecccceEEEEeecCCCCeEEEEecc-----eEEeeccCCcEEEEEEeeccccceEEEEeecCCCc-eEeeec-cc
Q 000080 140 ---AILVQGTKVEAIEWTGSGDGIVAGGME-----TVLWKKKNTLWEIAWKFKENYPQNLVSATWSIEGP-SATAAS-MS 209 (2389)
Q Consensus 140 ---~tL~hssTV~sIAWSpdG~rLaSggdD-----V~IW~~~~s~Wecvwt~~~~~~~~ivsvaWSpdG~-fATag~-di 209 (2389)
.++.|..+|+.|.|...|+||+++.-+ |.|.|.....=++-+. .....+..+.+-|.-. |..|++ .+
T Consensus 513 ~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~---kskG~vq~v~FHPs~p~lfVaTq~~v 589 (733)
T KOG0650|consen 513 GVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR---KSKGLVQRVKFHPSKPYLFVATQRSV 589 (733)
T ss_pred ceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh---hcCCceeEEEecCCCceEEEEeccce
Confidence 556688999999999999999966653 7788854433333321 1223455667777655 333333 33
Q ss_pred c-cccC----------C---------CCCCCceeEEEeeCCCc---------cceeecccCCCCeeEEEeccCCCCCCCC
Q 000080 210 Q-LDLL----------G---------PKEAGKCVFICCSDGKS---------EYIKLELCHPQPVSMVQWRPSTRRHSPG 260 (2389)
Q Consensus 210 k-f~~~----------~---------~~~~~kpV~V~~~dg~~---------~~~~ve~aH~qdVn~V~W~Ps~~~~~~~ 260 (2389)
+ |... + .+..++ +.+.-+|.+. --......|...|..|+.||
T Consensus 590 RiYdL~kqelvKkL~tg~kwiS~msihp~GDn-li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-------- 660 (733)
T KOG0650|consen 590 RIYDLSKQELVKKLLTGSKWISSMSIHPNGDN-LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-------- 660 (733)
T ss_pred EEEehhHHHHHHHHhcCCeeeeeeeecCCCCe-EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc--------
Confidence 3 1110 0 011111 1111112111 01123467999999999999
Q ss_pred CCccccCceEEeeecCCeEEEEE
Q 000080 261 DTKRSQRHVLLTCCLDGTVRLWC 283 (2389)
Q Consensus 261 Dgk~~~~nILAScSdDgTVRLW~ 283 (2389)
.-.+++|||+||||-|.-
T Consensus 661 -----ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 661 -----RYPLFASGSDDGTVIVFH 678 (733)
T ss_pred -----ccceeeeecCCCcEEEEe
Confidence 357899999999998876
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.8e-07 Score=107.23 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=99.0
Q ss_pred EEEEEEcCCCCeE-EEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCcEEEee
Q 000080 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~~L-ASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgTVkLWD 2299 (2389)
...++|+|+|+++ ++...+++|++||+.+...+........ ..+ .| ...+.++|+|||+++.++.. +++|.+||
T Consensus 128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~-~~~-~g--~~p~~~~~~pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV-TTV-EG--AGPRHMVFHPNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce-ecC-CC--CCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence 3677999999987 5566779999999976432211000000 001 12 33578999999999988876 99999999
Q ss_pred CCCCCccCcccceeeeec------CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecC---cEE
Q 000080 2300 LEVGGRSNVRPMESCLCF------SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG---LYD 2370 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gH------s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~---~V~ 2370 (2389)
++.++. ..+.+.++..+ .....+++|+| ||++|.++. ..+++|.+||+. +......+.+|.. ..+
T Consensus 204 ~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~--~~~~~I~v~~i~--~~~~~~~~~~~~~~~~~p~ 277 (330)
T PRK11028 204 LKDPHG-EIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACD--RTASLISVFSVS--EDGSVLSFEGHQPTETQPR 277 (330)
T ss_pred EeCCCC-CEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEec--CCCCeEEEEEEe--CCCCeEEEeEEEeccccCC
Confidence 974210 11233333222 22344689999 999988863 467899999983 2222233444422 456
Q ss_pred EEeecccchhhhccc
Q 000080 2371 LFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2371 svA~~~~~~~~~s~~ 2385 (2389)
.++++|+|+|+..-+
T Consensus 278 ~~~~~~dg~~l~va~ 292 (330)
T PRK11028 278 GFNIDHSGKYLIAAG 292 (330)
T ss_pred ceEECCCCCEEEEEE
Confidence 889999999987544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.8e-08 Score=113.84 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=69.7
Q ss_pred CCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc
Q 000080 2215 ATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2389)
Q Consensus 2215 atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT 2294 (2389)
.+++|.+|..|..-||++++||++.|+.||++.+++.+.+..++ +|.+.|.+|+|+||-..+|+||.|++
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk----------yHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK----------YHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh----------hhhcceeEEEeCCCCchhhhccCCce
Confidence 55667777888999999999999999999999999999888774 68899999999999999999999999
Q ss_pred EEEeeC
Q 000080 2295 VCTWQL 2300 (2389)
Q Consensus 2295 VkLWDl 2300 (2389)
|.||++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-07 Score=109.61 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=98.3
Q ss_pred eEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCce--eeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEE
Q 000080 2221 STRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVC 2296 (2389)
Q Consensus 2221 ~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~--l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVk 2296 (2389)
++.+..|+- |-++|.+.|-|+|..+||+++|.. ++|- + ..|...|..|+|.-+| +.|||.+.||.||
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ--L-------IAHDKEV~DIaf~~~s~~~FASvgaDGSvR 222 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ--L-------IAHDKEVYDIAFLKGSRDVFASVGADGSVR 222 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccccceeeE--E-------EecCcceeEEEeccCccceEEEecCCCcEE
Confidence 557777776 455899999999999999999843 4442 1 2467999999999987 7999999999999
Q ss_pred EeeCCCCCc-------------------------------------------cCcccceeeeecCCCeeEEEEecCCCCE
Q 000080 2297 TWQLEVGGR-------------------------------------------SNVRPMESCLCFSSHAMDVSYITSSGSV 2333 (2389)
Q Consensus 2297 LWDl~tggr-------------------------------------------s~~k~l~tl~gHs~~V~sVAFSP~DGsl 2333 (2389)
+.|++.-.. .--.|+..+++|.+.|+.++|.|.++..
T Consensus 223 mFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 223 MFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred EEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCce
Confidence 999976321 0113567789999999999999999999
Q ss_pred EEEeecCCCCCeEEEeeCC
Q 000080 2334 IAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2334 LASAG~sS~D~TVrLWD~l 2352 (2389)
|+|+| +|..+-|||+-
T Consensus 303 ictaG---DD~qaliWDl~ 318 (364)
T KOG0290|consen 303 ICTAG---DDCQALIWDLQ 318 (364)
T ss_pred eeecC---CcceEEEEecc
Confidence 99986 99999999984
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-08 Score=120.16 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=122.9
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
++|..+.|=|.--+|+++|..|-++-=|+.+|+.+..++. | .+.+..+.=+|-.-.+-.|-..|||.||.
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---------~-~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---------G-AGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc---------c-CCccchhhcCCccceEEEcCCCceEEecC
Confidence 5788999999999999999999999999999999877751 1 26688889999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
.+.. .|+..+.||.+.|++||+.+ +|+++||+| .|+.|+|||+. .-..++++.- ..++..+++|-.|.
T Consensus 280 P~sk-----ePLvKiLcH~g~V~siAv~~-~G~YMaTtG---~Dr~~kIWDlR--~~~ql~t~~t-p~~a~~ls~Sqkgl 347 (545)
T KOG1272|consen 280 PNSK-----EPLVKILCHRGPVSSIAVDR-GGRYMATTG---LDRKVKIWDLR--NFYQLHTYRT-PHPASNLSLSQKGL 347 (545)
T ss_pred CCCc-----chHHHHHhcCCCcceEEECC-CCcEEeecc---cccceeEeeec--cccccceeec-CCCccccccccccc
Confidence 8874 58888999999999999999 999999986 89999999984 2334555554 56788999999999
Q ss_pred hhhcc
Q 000080 2380 FALSK 2384 (2389)
Q Consensus 2380 ~~~s~ 2384 (2389)
-|||-
T Consensus 348 LA~~~ 352 (545)
T KOG1272|consen 348 LALSY 352 (545)
T ss_pred eeeec
Confidence 88874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=115.07 Aligned_cols=149 Identities=11% Similarity=0.153 Sum_probs=114.7
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|++++|+.||+.|++.+.+|.|.+||+++..+++++.. .|. -.=++++.|++|.+||+||.-|-|-|+|.
T Consensus 346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~--------v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGS--------VHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCc--------cceeeeeecCCCceEEeccCcceEEEecc
Confidence 479999999999999999999999999999999999852 221 12378899999999999999999999996
Q ss_pred CCCC-ccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE---EeecCcEEEEeecc
Q 000080 2301 EVGG-RSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---TCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2301 ~tgg-rs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL---~GH~~~V~svA~~~ 2376 (2389)
++-- -.+++|+.++..-...|++++|+| |+++||-++ ...++++||=-+ |.-+....+ ..--+-|+|+||+|
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS-~~~knalrLVHv--PS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQILAIAS-RVKKNALRLVHV--PSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCc-chhhhhhhh-hccccceEEEec--cceeeeccCCCCCCcccceEEEEecC
Confidence 6520 026789999999999999999999 999999874 237788999776 211111111 22335589999999
Q ss_pred -cchhhh
Q 000080 2377 -LLNFAL 2382 (2389)
Q Consensus 2377 -~~~~~~ 2382 (2389)
.|-.|+
T Consensus 493 ~sG~lAv 499 (514)
T KOG2055|consen 493 NSGYLAV 499 (514)
T ss_pred CCceEEe
Confidence 444444
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=111.01 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=112.7
Q ss_pred EcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCC---EEEEEECCCCCEEEEEeCCCcEEEeeCCCC
Q 000080 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALAS---ISALQFDHYGHRFASAALDGTVCTWQLEVG 2303 (2389)
Q Consensus 2227 FsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~---V~sVaFSPDG~~LASgS~DgTVkLWDl~tg 2303 (2389)
-.|+..++|+.|.|.-|+|||.-+|+....|+.. + |.+. -.+++|||||..|..|. .++||+.|+...
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~y---d-----h~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~Rp 189 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAY---D-----HQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRP 189 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhhh---h-----hHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCC
Confidence 3477889999999999999999999998888632 1 3343 35799999999887664 589999999444
Q ss_pred CccCcccceeee-----ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2304 GRSNVRPMESCL-----CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2304 grs~~k~l~tl~-----gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
||- .+.++.. |..+.+.+++|+|-+.+.+|.++ -.+++-|+.- -....++.|-||.++|+-+...|+|
T Consensus 190 Gr~--c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs---Y~q~~giy~~--~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 190 GRD--CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS---YGQRVGIYND--DGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred CCC--CcchhhhhcccccccceeeeeeccCCCCcceeeec---ccceeeeEec--CCCCceeeecccCCCeeeEEeccCc
Confidence 442 2333333 33788899999998888999864 5677777663 1345589999999999999999999
Q ss_pred hhhhccccc
Q 000080 2379 NFALSKCRC 2387 (2389)
Q Consensus 2379 ~~~~s~~~~ 2387 (2389)
|...|-.||
T Consensus 263 n~lfsGaRk 271 (406)
T KOG2919|consen 263 NKLFSGARK 271 (406)
T ss_pred CeecccccC
Confidence 999998887
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-07 Score=114.27 Aligned_cols=144 Identities=12% Similarity=0.055 Sum_probs=98.7
Q ss_pred eEEEEEEcCCCCeEEEEeCC---CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE-EEeCCCcEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVC 2296 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~D---gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA-SgS~DgTVk 2296 (2389)
.+.+.+|+|||+.||..+.+ ..|++||+.+|+..+... .+ ..+.+.+|||||+.|| +.+.||..+
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~----------g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FK----------GSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CC----------CCccceEECCCCCEEEEEEccCCCce
Confidence 34778999999999987753 469999999887643211 11 2356899999999987 567889888
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
||.++..+ .....+..|...+.+.+|+| ||+.|+.++ ..++..+||.+....+ ..+.+..+.......+++|
T Consensus 266 Iy~~d~~~----~~~~~lt~~~~~~~~~~wSp-DG~~l~f~s--~~~g~~~Iy~~~~~~g-~~~~lt~~g~~~~~~~~Sp 337 (427)
T PRK02889 266 IYTVNADG----SGLRRLTQSSGIDTEPFFSP-DGRSIYFTS--DRGGAPQIYRMPASGG-AAQRVTFTGSYNTSPRISP 337 (427)
T ss_pred EEEEECCC----CCcEECCCCCCCCcCeEEcC-CCCEEEEEe--cCCCCcEEEEEECCCC-ceEEEecCCCCcCceEECC
Confidence 88765322 12344555666667789999 999988753 3456788887643333 3344433333345678999
Q ss_pred cchhhhc
Q 000080 2377 LLNFALS 2383 (2389)
Q Consensus 2377 ~~~~~~s 2383 (2389)
+|++++.
T Consensus 338 DG~~Ia~ 344 (427)
T PRK02889 338 DGKLLAY 344 (427)
T ss_pred CCCEEEE
Confidence 9999764
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=123.85 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=92.8
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
..+-++.++-||++++|.|+|.+||+|++++++.... + -.||+++|+++.|.|. .++|++.|.|.++|+
T Consensus 176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~------~---~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC------T---GFGHSARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred CceEEEEEccCCcEEEEEecCcceeeeecccccccCc------c---cccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence 3568999999999999999999999999998876541 1 1479999999999999 999999999999997
Q ss_pred CCCCCccCcccceeeeecC-CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2300 LEVGGRSNVRPMESCLCFS-SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs-~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
.+.. .+..+.+|. +.++.++..+ +-.++.|+| +|+++|+||..
T Consensus 245 ~~~~------~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g---~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 245 VNGT------QLEVYDEHSGKGIWKIAVPI-GVIIKVTGG---NDSTLKLWDLN 288 (967)
T ss_pred cccc------eehhhhhhhhcceeEEEEcC-CceEEEeec---cCcchhhhhhh
Confidence 7642 344566676 6788999998 556666765 99999999973
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-07 Score=111.61 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=124.2
Q ss_pred ceeeccccccccccccc---------cCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2195 GASALGWETQDDFEDYV---------DPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2195 ~Asg~~~d~~~~~~~~~---------d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
..+| |-....++|++. |+.- .|..|.++-+..+||++|..|.|.|-.+.++....+|. |
T Consensus 94 ~~sg-G~~~~Vkiwdl~~kl~hr~lkdh~s-----tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~----~-- 161 (673)
T KOG4378|consen 94 EISG-GQSGCVKIWDLRAKLIHRFLKDHQS-----TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT----I-- 161 (673)
T ss_pred eecc-CcCceeeehhhHHHHHhhhccCCcc-----eeEEEEecCCcceeEEeccCCcEEEEecccCcccccee----c--
Confidence 3445 556667777763 3332 24778999999999999999999999999998887774 2
Q ss_pred CCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccce-eeeecCCCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2266 PPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPME-SCLCFSSHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~-tl~gHs~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
+....|+-+.|||-- ..|.++|.||+|.|||+... .|+. -...|+.+..+|+|+|.+..+|||.| .|
T Consensus 162 ---~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-----sp~~~~~~~HsAP~~gicfspsne~l~vsVG---~D 230 (673)
T KOG4378|consen 162 ---DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-----SPIFHASEAHSAPCRGICFSPSNEALLVSVG---YD 230 (673)
T ss_pred ---CCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-----CcccchhhhccCCcCcceecCCccceEEEec---cc
Confidence 123678999999997 46778999999999999843 3443 35679999999999998888999986 89
Q ss_pred CeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2344 INVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+.|.++|+. ......+|. .+.+..+||+++.|-.
T Consensus 231 kki~~yD~~--s~~s~~~l~-y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 231 KKINIYDIR--SQASTDRLT-YSHPLSTVAFSECGTY 264 (673)
T ss_pred ceEEEeecc--cccccceee-ecCCcceeeecCCceE
Confidence 999999984 334455664 4556889999998864
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-07 Score=105.37 Aligned_cols=138 Identities=20% Similarity=0.266 Sum_probs=102.4
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce----eeEecccCCCCCCCCCCC-----CCEEEEEECCCCCEEEEEe
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA----TATYGVLPAANVPPPYAL-----ASISALQFDHYGHRFASAA 2290 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~----l~Tl~vl~gh~~p~~GH~-----~~V~sVaFSPDG~~LASgS 2290 (2389)
.+|..++|+ ..+|+||++ |.||=|.++.-.. .+.+++ -+|.|. ..|+++-..|.-+-+..|+
T Consensus 63 gpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~------~~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 63 GPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEV------KIPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred CCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhh------cCccccCcccCCccceeEeccCCCcEEEec
Confidence 467899999 456888765 9999999873322 111211 112333 4689999999999899999
Q ss_pred CCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe--ec--
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC--HE-- 2366 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G--H~-- 2366 (2389)
.|+.+.-||+++| +..+++.||++.|-+|+--..+|++| || ++||||||||+ .++++++.++- |+
T Consensus 134 GD~~~y~~dlE~G-----~i~r~~rGHtDYvH~vv~R~~~~qil-sG---~EDGtvRvWd~--kt~k~v~~ie~yk~~~~ 202 (325)
T KOG0649|consen 134 GDGVIYQVDLEDG-----RIQREYRGHTDYVHSVVGRNANGQIL-SG---AEDGTVRVWDT--KTQKHVSMIEPYKNPNL 202 (325)
T ss_pred CCeEEEEEEecCC-----EEEEEEcCCcceeeeeeecccCccee-ec---CCCccEEEEec--cccceeEEeccccChhh
Confidence 9999999999998 46688999999999998844366655 65 69999999998 57888877643 22
Q ss_pred ------CcEEEEeeccc
Q 000080 2367 ------GLYDLFLPLKL 2377 (2389)
Q Consensus 2367 ------~~V~svA~~~~ 2377 (2389)
.+|.++|.+++
T Consensus 203 lRp~~g~wigala~~ed 219 (325)
T KOG0649|consen 203 LRPDWGKWIGALAVNED 219 (325)
T ss_pred cCcccCceeEEEeccCc
Confidence 34567776654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=116.69 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=102.1
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC--CEEEEEeCCCcEEE
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG--HRFASAALDGTVCT 2297 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG--~~LASgS~DgTVkL 2297 (2389)
.-|.+++|+.||.+|||||+|..+.+||.-.-+.+.... .||.+-|.++.|=|.- +.++||+.|.-|+|
T Consensus 51 GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred ceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------cccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 457899999999999999999999999998778777763 5789999999999873 68999999999999
Q ss_pred eeCCCC---C--ccCcccceeeeecCCCeeEEEEecCCC-CEEEEeecCCCCCeEEEeeCCCC
Q 000080 2298 WQLEVG---G--RSNVRPMESCLCFSSHAMDVSYITSSG-SVIAAAGHSSNGINVVVWDTLAP 2354 (2389)
Q Consensus 2298 WDl~tg---g--rs~~k~l~tl~gHs~~V~sVAFSP~DG-slLASAG~sS~D~TVrLWD~l~~ 2354 (2389)
.|+... + .....+...+.||...|-.+|--| +| ..+-+| |+|||||=.|+..+
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p-~~Phtfwsa---sEDGtirQyDiREp 180 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP-NGPHTFWSA---SEDGTIRQYDIREP 180 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCC-CCCceEEEe---cCCcceeeecccCC
Confidence 999851 0 002245677899999999999999 66 677776 59999999999643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-07 Score=115.22 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=120.8
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCC-----------------------------------
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN----------------------------------- 2264 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~----------------------------------- 2264 (2389)
+++|+|+.+|+|+.||+|-.-|++|++|+..-+.+.+. ++|.
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~---eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM---EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhhe---ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 57799999999999999999999999998643332211 2222
Q ss_pred C----CCCCCCCCEEEEEECCCC-------------------------------------------------CEEEEEeC
Q 000080 2265 V----PPPYALASISALQFDHYG-------------------------------------------------HRFASAAL 2291 (2389)
Q Consensus 2265 ~----p~~GH~~~V~sVaFSPDG-------------------------------------------------~~LASgS~ 2291 (2389)
+ ..-||+..|++|.|--.| +.++++..
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 0 033566666666665444 46677888
Q ss_pred CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEE
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDL 2371 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~s 2371 (2389)
|+.|+++|++.|. ..+.++.-++|.+..-.|...| +|-+|||. ..|+|+.+.|. -+++|+....||...|+.
T Consensus 617 Drnirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDP-SgiY~atS---csdktl~~~Df--~sgEcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 617 DRNIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDP-SGIYLATS---CSDKTLCFVDF--VSGECVAQMTGHSEAVTG 688 (1080)
T ss_pred ccceEEEeccccc--eeeeecccccCCCceEEEEECC-CccEEEEe---ecCCceEEEEe--ccchhhhhhcCcchheee
Confidence 9999999999874 4466777788988888899999 99999995 68999999998 579999999999999999
Q ss_pred Eeecccchhhhcc
Q 000080 2372 FLPLKLLNFALSK 2384 (2389)
Q Consensus 2372 vA~~~~~~~~~s~ 2384 (2389)
+-|.+|-+-..|-
T Consensus 689 ~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 689 VKFLNDCKHLISV 701 (1080)
T ss_pred eeecccchhheee
Confidence 9999987766553
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-07 Score=108.33 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=112.4
Q ss_pred EEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCcEEEee
Q 000080 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgTVkLWD 2299 (2389)
+..++|||... .+|.||...++-|+....++.+.++. ||.+.|+.++|.+||++|-||+. |-.|-.||
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg----------gh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG----------GHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeec----------ccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 57889999766 99999999999999987777887763 67899999999999999999885 77899999
Q ss_pred CCCCCccCcccceeeeecCCCee-EEEEe--cCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAM-DVSYI--TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~-sVAFS--P~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
++..+ .++..+..|...-+ .|-|. | +|++||+| +.||.|++||+. ..++.+..+..|..-|+.|+.+|
T Consensus 280 iR~~~----~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG---~tdG~V~vwdlk-~~gn~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 280 IRYSR----DPVYALERHVGDTNQRILFDLDP-KGEILASG---DTDGSVRVWDLK-DLGNEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred ehhcc----chhhhhhhhccCccceEEEecCC-CCceeecc---CCCccEEEEecC-CCCCcccccccccccccceecCc
Confidence 99763 68888888876322 34454 6 89999986 589999999983 34666778888888888888887
Q ss_pred c
Q 000080 2377 L 2377 (2389)
Q Consensus 2377 ~ 2377 (2389)
-
T Consensus 351 ~ 351 (406)
T KOG2919|consen 351 I 351 (406)
T ss_pred c
Confidence 5
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.8e-07 Score=110.77 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=97.5
Q ss_pred eEEEEEEcCCCCeEEEEe---CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEE-eCCC--c
Q 000080 2221 STRAFSSHPLRPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDG--T 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS---~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASg-S~Dg--T 2294 (2389)
.+.+.+|||||+.||..+ .+..|++||+.+|+...... ++ +| +.+++|||||++||.. +.+| .
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~-------~~---~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FP-------RH---NGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CC-------CC---cCCeEECCCCCEEEEEEcCCCCcE
Confidence 457889999999988654 35689999998886533211 12 22 4568999999999865 4455 4
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
|.+||++++. ...+..+...+...+|+| ||+.|+.++ ..++..+||.+... +...+.+..+.....+.++
T Consensus 269 I~~~d~~tg~------~~~lt~~~~~~~~~~wSP-DG~~I~f~s--~~~g~~~Iy~~d~~-~g~~~~lt~~~~~~~~~~~ 338 (429)
T PRK03629 269 LYVMDLASGQ------IRQVTDGRSNNTEPTWFP-DSQNLAYTS--DQAGRPQVYKVNIN-GGAPQRITWEGSQNQDADV 338 (429)
T ss_pred EEEEECCCCC------EEEccCCCCCcCceEECC-CCCEEEEEe--CCCCCceEEEEECC-CCCeEEeecCCCCccCEEE
Confidence 8889998762 233344445677899999 999998753 24456677754322 3345566655556678899
Q ss_pred cccchhhhc
Q 000080 2375 LKLLNFALS 2383 (2389)
Q Consensus 2375 ~~~~~~~~s 2383 (2389)
+|+|++++-
T Consensus 339 SpDG~~Ia~ 347 (429)
T PRK03629 339 SSDGKFMVM 347 (429)
T ss_pred CCCCCEEEE
Confidence 999998753
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.3e-07 Score=109.32 Aligned_cols=137 Identities=12% Similarity=0.190 Sum_probs=108.4
Q ss_pred eEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCc-eeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEE
Q 000080 2221 STRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDK-ATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk-~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkL 2297 (2389)
.||-+.|||..+ +|.++|+||+|.|||+ +|. .+..+. . .|.+.-+.|+|||-. ..|+|.+.|..|.+
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv-~g~sp~~~~~--~-------~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDV-QGMSPIFHAS--E-------AHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEec-cCCCcccchh--h-------hccCCcCcceecCCccceEEEecccceEEE
Confidence 468889999988 4677999999999998 454 443332 2 366788999999986 79999999999999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
+|++.. + ....+ .-+.+..+|||++ +|.+|+.| +..|-|.-+|+. .+...+..+..|.+.|++||+.+.
T Consensus 236 yD~~s~-~----s~~~l-~y~~Plstvaf~~-~G~~L~aG---~s~G~~i~YD~R-~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 236 YDIRSQ-A----STDRL-TYSHPLSTVAFSE-CGTYLCAG---NSKGELIAYDMR-STKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred eecccc-c----cccee-eecCCcceeeecC-CceEEEee---cCCceEEEEecc-cCCCCceEeeecccceeEEEeeec
Confidence 999864 2 22222 2456778999999 99999864 577889999985 445669999999999999999886
Q ss_pred c
Q 000080 2378 L 2378 (2389)
Q Consensus 2378 ~ 2378 (2389)
-
T Consensus 305 ~ 305 (673)
T KOG4378|consen 305 P 305 (673)
T ss_pred c
Confidence 4
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-07 Score=111.58 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=105.7
Q ss_pred CCCcCceeEEEEEEcCCCC-eEEEEeCCCcEEEeecC--------------CCcee--eEecccCCCCCC----CCCCCC
Q 000080 2214 PATVENISTRAFSSHPLRP-FFLVGSSNTHIYLWEFG--------------KDKAT--ATYGVLPAANVP----PPYALA 2272 (2389)
Q Consensus 2214 ~atv~ni~VrsVAFsPdG~-~LASGS~DgTIRLWDl~--------------tGk~l--~Tl~vl~gh~~p----~~GH~~ 2272 (2389)
.+.++.-+|.+|.|=|.+. .++.+-.+|.++++|.. .|... .+-..-...| | ..+ .+
T Consensus 214 ~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN-Pv~~w~~~-~g 291 (636)
T KOG2394|consen 214 ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN-PVARWHIG-EG 291 (636)
T ss_pred cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC-ccceeEec-cc
Confidence 3455555789999999665 45556789999999753 11100 0000000000 1 011 24
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2273 SISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2273 ~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
.|...+|||||+.||+.|.||.+||.|..+.. .+-.++++- +...+|+||| ||++||||| +|-.|.||.+
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--Llg~mkSYF---GGLLCvcWSP-DGKyIvtGG---EDDLVtVwSf- 361 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--LLGVMKSYF---GGLLCVCWSP-DGKYIVTGG---EDDLVTVWSF- 361 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHH--HHHHHHhhc---cceEEEEEcC-CccEEEecC---CcceEEEEEe-
Confidence 68889999999999999999999999998742 111222222 4677899999 999999975 9999999998
Q ss_pred CCCCCceEEEEeecCcEEEEeecc
Q 000080 2353 APPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2353 ~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
+..+.|..=+||..||..|||.|
T Consensus 362 -~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 -EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -ccceEEEeccccccceeeEeecc
Confidence 45666888999999999999985
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.6e-07 Score=108.87 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=97.9
Q ss_pred CeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECC--CCCEEEEEeCCCcEEEeeCCCCCccCcc
Q 000080 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2389)
Q Consensus 2232 ~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP--DG~~LASgS~DgTVkLWDl~tggrs~~k 2309 (2389)
..+|+|=..|+|||+|..+|+.+..|.+ |.+.+..|+|.. .++.+.||+.|||||+||+++.++ .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~----------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e---~ 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG----------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE---S 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC----------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh---h
Confidence 4588888999999999999998888863 234467888876 468899999999999999998643 4
Q ss_pred cceeeeecCC-CeeEEEEecCCCCEEEEeec-CCCCCeEEEeeCCCCCCCceE-EEEeecCcEEEEeecccch
Q 000080 2310 PMESCLCFSS-HAMDVSYITSSGSVIAAAGH-SSNGINVVVWDTLAPPTSSRA-SITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2310 ~l~tl~gHs~-~V~sVAFSP~DGslLASAG~-sS~D~TVrLWD~l~~tg~~v~-sL~GH~~~V~svA~~~~~~ 2379 (2389)
+.....+|++ .-.+++-+- .++++|+|-- .-.|..|.+||+... .+.+. -.+.|.+.|++|-|+|+-.
T Consensus 108 a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~-qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSE-QQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred hheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccc-cchhhhhhhhccCcceeEEecCCCC
Confidence 5666677773 333455443 5678886410 115778999999532 23244 4588999999999999754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-07 Score=121.52 Aligned_cols=168 Identities=12% Similarity=0.163 Sum_probs=130.5
Q ss_pred ccccceeeccccccccccccccCCCCcCc------eeEEEEEEcCC-CCeEEEEeCCCcEEEeecCCCceeeEecccCCC
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPPATVEN------ISTRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA 2263 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~atv~n------i~VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh 2263 (2389)
++-.+||| +.|..+=+|+...+...... -.|..|+|+.. ..+||||+.+|.+-+||++..+.+..+. .+
T Consensus 128 q~nlLASG-a~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls---~~ 203 (1049)
T KOG0307|consen 128 QGNLLASG-ADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS---DT 203 (1049)
T ss_pred CCceeecc-CCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc---cC
Confidence 44568888 88888889988754332211 14588999985 5589999999999999999887766553 22
Q ss_pred CCCCCCCCCCEEEEEECCCC-CEEEEEeCC---CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeec
Q 000080 2264 NVPPPYALASISALQFDHYG-HRFASAALD---GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH 2339 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSPDG-~~LASgS~D---gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~ 2339 (2389)
+..-.+..|+++||+ .+++++++| -.|++||++... .|++.+++|+..|.++.|.+.|.++|+|.|
T Consensus 204 -----~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as----sP~k~~~~H~~GilslsWc~~D~~lllSsg- 273 (1049)
T KOG0307|consen 204 -----PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS----SPLKILEGHQRGILSLSWCPQDPRLLLSSG- 273 (1049)
T ss_pred -----CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC----CchhhhcccccceeeeccCCCCchhhhccc-
Confidence 111348899999998 688888877 469999998752 688889999999999999998879999975
Q ss_pred CCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2340 SSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2340 sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
.|+.|-+|+. .+++.+..|....+|+.-|-+.|
T Consensus 274 --kD~~ii~wN~--~tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 274 --KDNRIICWNP--NTGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred --CCCCeeEecC--CCceEeeecCCCCcceeeeeecC
Confidence 8999999998 46777888877777777665544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8e-07 Score=111.13 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=100.3
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|..|+|-|||..|+-+..| .+.++|...|.+++|++ ||.+.|++||+|.||++||||+.|..|-+|.-
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLK----------gHKDtVycVAys~dGkrFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLK----------GHKDTVYCVAYAKDGKRFASGSADKSVIIWTS 82 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccc----------cccceEEEEEEccCCceeccCCCceeEEEecc
Confidence 34777999999988776544 69999999999999985 57899999999999999999999999999976
Q ss_pred CCCCc---cC---ccc---------cee--e-------------ee--cCCCeeEEEEecCCCCEEEEeecCCCCCeEEE
Q 000080 2301 EVGGR---SN---VRP---------MES--C-------------LC--FSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2389)
Q Consensus 2301 ~tggr---s~---~k~---------l~t--l-------------~g--Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrL 2348 (2389)
...|- |+ +++ +.+ + +- -+..|.+.+|.. ||+++|-| -.||||.|
T Consensus 83 klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG---~~nGTIsi 158 (1081)
T KOG1538|consen 83 KLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALG---MFNGTISI 158 (1081)
T ss_pred cccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEe---ccCceEEe
Confidence 54331 00 000 000 0 00 124566788887 99999974 37899998
Q ss_pred eeCCCCCCCc---eEEEEeecCcEEEEeeccc
Q 000080 2349 WDTLAPPTSS---RASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2349 WD~l~~tg~~---v~sL~GH~~~V~svA~~~~ 2377 (2389)
=+- +++. ++.--|...+|++++..|.
T Consensus 159 RNk---~gEek~~I~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 159 RNK---NGEEKVKIERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred ecC---CCCcceEEeCCCCCCCCceEEEecCC
Confidence 874 3433 2333346677888887764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=111.08 Aligned_cols=117 Identities=13% Similarity=0.217 Sum_probs=106.2
Q ss_pred ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2219 NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2219 ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
...++.++..|+.++++++.+|..|||+|+++|+++++|++. .+|.+..-.|...|.|.++|+...|+|+.+.
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-------~~~eG~lIKv~lDPSgiY~atScsdktl~~~ 668 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-------RDHEGDLIKVILDPSGIYLATSCSDKTLCFV 668 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-------ccCCCceEEEEECCCccEEEEeecCCceEEE
Confidence 345689999999999999999999999999999999999753 2567888999999999999999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
|.-+| .++.+..||+-.|..+-|.+ |-+.|.|+ |.|+-|-||.+
T Consensus 669 Df~sg-----EcvA~m~GHsE~VTG~kF~n-DCkHlISv---sgDgCIFvW~l 712 (1080)
T KOG1408|consen 669 DFVSG-----ECVAQMTGHSEAVTGVKFLN-DCKHLISV---SGDGCIFVWKL 712 (1080)
T ss_pred Eeccc-----hhhhhhcCcchheeeeeecc-cchhheee---cCCceEEEEEC
Confidence 99997 47888899999999999999 88888887 58999999997
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=109.74 Aligned_cols=140 Identities=13% Similarity=0.061 Sum_probs=94.7
Q ss_pred EEEEEEcCCCCeEEEEeCC---CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE-EEeCCC--cE
Q 000080 2222 TRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDG--TV 2295 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~D---gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA-SgS~Dg--TV 2295 (2389)
+.+.+|+|||+.|+..+.+ ..|++||+.+|+.... ... .+.+.+++|||||++|| +.+.+| .|
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~----------~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASF----------RGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccC----------CCCccCceECCCCCEEEEEEeCCCCceE
Confidence 4677999999999988743 4799999988875432 111 12345789999999886 445555 59
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeec
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~ 2375 (2389)
.+||++++. ...+..|.....+++|+| ||+.|+.++ ..++..+||.+...+++ .+.+..+.......+.+
T Consensus 275 y~~d~~~g~------~~~lt~~~~~~~~~~~sp-DG~~l~f~s--d~~g~~~iy~~dl~~g~-~~~lt~~g~~~~~~~~S 344 (433)
T PRK04922 275 YVMDLGSRQ------LTRLTNHFGIDTEPTWAP-DGKSIYFTS--DRGGRPQIYRVAASGGS-AERLTFQGNYNARASVS 344 (433)
T ss_pred EEEECCCCC------eEECccCCCCccceEECC-CCCEEEEEE--CCCCCceEEEEECCCCC-eEEeecCCCCccCEEEC
Confidence 999998762 344555665667899999 999988753 24455455544223333 44444344445578999
Q ss_pred ccchhhh
Q 000080 2376 KLLNFAL 2382 (2389)
Q Consensus 2376 ~~~~~~~ 2382 (2389)
|+|+++.
T Consensus 345 pDG~~Ia 351 (433)
T PRK04922 345 PDGKKIA 351 (433)
T ss_pred CCCCEEE
Confidence 9998865
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.7e-07 Score=111.15 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=92.4
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeE
Q 000080 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2389)
Q Consensus 2267 ~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TV 2346 (2389)
..+|-+.|.++..+.+-..|=|++.|+.|..|+...+ +.++.+.+-...+.+++++| ||..|++|+ ++|
T Consensus 98 t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-----~~~~~~~~~~~~~~sl~is~-D~~~l~~as-----~~i 166 (541)
T KOG4547|consen 98 TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-----VIIRIWKEQKPLVSSLCISP-DGKILLTAS-----RQI 166 (541)
T ss_pred cCCCCCcceeeecccccCceEecCCceeEEEEecccc-----eeeeeeccCCCccceEEEcC-CCCEEEecc-----ceE
Confidence 4678888999999999899999999999999999875 45667778888899999999 899999974 899
Q ss_pred EEeeCCCCCCCceEEEEeecCcEEEEeeccc-----chhhhcc
Q 000080 2347 VVWDTLAPPTSSRASITCHEGLYDLFLPLKL-----LNFALSK 2384 (2389)
Q Consensus 2347 rLWD~l~~tg~~v~sL~GH~~~V~svA~~~~-----~~~~~s~ 2384 (2389)
++||+ .+++-+++|.||.+.|+++++-++ |.+.||-
T Consensus 167 k~~~~--~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 167 KVLDI--ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred EEEEc--cCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 99998 577889999999999999999998 8887764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-07 Score=112.23 Aligned_cols=124 Identities=13% Similarity=0.073 Sum_probs=90.8
Q ss_pred eCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC---CcEEEeeCCCCCccCcccceee
Q 000080 2238 SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESC 2314 (2389)
Q Consensus 2238 S~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D---gTVkLWDl~tggrs~~k~l~tl 2314 (2389)
+.+.+|++||. +|...+.+. +|...|.+++|||||++||.++.+ .+|.+||++++.+ +.+..+
T Consensus 181 ~~~~~i~i~d~-dg~~~~~lt----------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---~~l~~~ 246 (429)
T PRK01742 181 SQPYEVRVADY-DGFNQFIVN----------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---KVVASF 246 (429)
T ss_pred CceEEEEEECC-CCCCceEec----------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---EEEecC
Confidence 34689999998 455455542 244679999999999999998765 3799999988631 334444
Q ss_pred eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2315 ~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
.+|. .+++|+| ||+.||.++ +.|+.++||.+... +..+..+..|...+.+.+++|+|++++
T Consensus 247 ~g~~---~~~~wSP-DG~~La~~~--~~~g~~~Iy~~d~~-~~~~~~lt~~~~~~~~~~wSpDG~~i~ 307 (429)
T PRK01742 247 RGHN---GAPAFSP-DGSRLAFAS--SKDGVLNIYVMGAN-GGTPSQLTSGAGNNTEPSWSPDGQSIL 307 (429)
T ss_pred CCcc---CceeECC-CCCEEEEEE--ecCCcEEEEEEECC-CCCeEeeccCCCCcCCEEECCCCCEEE
Confidence 4443 4689999 999999863 46787777754323 344677888888889999999999765
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-06 Score=102.08 Aligned_cols=140 Identities=12% Similarity=0.166 Sum_probs=92.5
Q ss_pred EEEEEEcCCCCeEEEEeC-CCcEEEeecCC--Cc--eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CCCcE
Q 000080 2222 TRAFSSHPLRPFFLVGSS-NTHIYLWEFGK--DK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTV 2295 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~-DgTIRLWDl~t--Gk--~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~DgTV 2295 (2389)
.+.++|+|||++++++.. +++|.+||+.. |+ .+.++...|.+. . +..+...++|+|||+++.++. .+++|
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~---~-~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF---S-DTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC---C-CCccceeEEECCCCCEEEEecCCCCeE
Confidence 478899999999887776 99999999973 33 344443222210 1 123456799999999888885 58999
Q ss_pred EEeeCCCCCccCcccceeeeecC---CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEEEeecCcEE
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFS---SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCHEGLYD 2370 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs---~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL~GH~~~V~ 2370 (2389)
.+|+++..+ ...++.+|. ...+.++|+| ||++|++++ ..+++|.+|++...++.. ++++.. ..+-.
T Consensus 253 ~v~~i~~~~-----~~~~~~~~~~~~~~p~~~~~~~-dg~~l~va~--~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~ 323 (330)
T PRK11028 253 SVFSVSEDG-----SVLSFEGHQPTETQPRGFNIDH-SGKYLIAAG--QKSHHISVYEIDGETGLLTELGRYAV-GQGPM 323 (330)
T ss_pred EEEEEeCCC-----CeEEEeEEEeccccCCceEECC-CCCEEEEEE--ccCCcEEEEEEcCCCCcEEEcccccc-CCCce
Confidence 999997542 111222332 2456799999 999999874 468999999874344432 344443 33444
Q ss_pred EEee
Q 000080 2371 LFLP 2374 (2389)
Q Consensus 2371 svA~ 2374 (2389)
|+++
T Consensus 324 ~~~~ 327 (330)
T PRK11028 324 WVSV 327 (330)
T ss_pred EEEE
Confidence 5554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-06 Score=104.73 Aligned_cols=139 Identities=14% Similarity=0.059 Sum_probs=97.0
Q ss_pred EEEEEEcCCCCeEEEEeCC---CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEE-EeCCC--cE
Q 000080 2222 TRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDG--TV 2295 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~D---gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LAS-gS~Dg--TV 2295 (2389)
+.+.+|+|||++||.++.+ .+|++||+.+|+...... +...+.+++|+|||+.|+. .+.++ .|
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-----------~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-----------FPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-----------CCCCccceEECCCCCEEEEEECCCCCccE
Confidence 4677999999999987754 489999998886543221 1234677899999998874 44444 58
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC--eEEEeeCCCCCCCceEEEEeecCcEEEEe
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGLYDLFL 2373 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~--TVrLWD~l~~tg~~v~sL~GH~~~V~svA 2373 (2389)
.+||++++. ...+..|.......+|+| ||+.|+.++ ..++ .|.+||+ . +...+.+..+...+..++
T Consensus 261 ~~~d~~~~~------~~~l~~~~~~~~~~~~s~-dg~~l~~~s--~~~g~~~iy~~d~--~-~~~~~~l~~~~~~~~~~~ 328 (417)
T TIGR02800 261 YVMDLDGKQ------LTRLTNGPGIDTEPSWSP-DGKSIAFTS--DRGGSPQIYMMDA--D-GGEVRRLTFRGGYNASPS 328 (417)
T ss_pred EEEECCCCC------EEECCCCCCCCCCEEECC-CCCEEEEEE--CCCCCceEEEEEC--C-CCCEEEeecCCCCccCeE
Confidence 888998752 233444555556788999 999888753 2333 5666675 2 334566766777778889
Q ss_pred ecccchhhhc
Q 000080 2374 PLKLLNFALS 2383 (2389)
Q Consensus 2374 ~~~~~~~~~s 2383 (2389)
.+|+|++++-
T Consensus 329 ~spdg~~i~~ 338 (417)
T TIGR02800 329 WSPDGDLIAF 338 (417)
T ss_pred ECCCCCEEEE
Confidence 9999987664
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-06 Score=105.58 Aligned_cols=138 Identities=15% Similarity=0.193 Sum_probs=110.3
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
.+.++-||+.++++|+++|++++||+ ..+..-+-.. .+.+.++.|.|.| .+|.|...|..-+-|.+
T Consensus 371 lwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~-----------~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII-----------EDPAECADFHPSG-VVAVGTATGRWFVLDTE 436 (626)
T ss_pred eeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe-----------cCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence 47889999999999999999999999 4455444321 2668999999999 99999999999999999
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecCcEEEEeecccchh
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~~V~svA~~~~~~~ 2380 (2389)
+. ..+....+ +.+++.|+|+| ||.+||.| |.|+.|.|+.+. +.+...... .+|-..|+-+..+.+++|
T Consensus 437 ~~-----~lv~~~~d-~~~ls~v~ysp-~G~~lAvg---s~d~~iyiy~Vs-~~g~~y~r~~k~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 437 TQ-----DLVTIHTD-NEQLSVVRYSP-DGAFLAVG---SHDNHIYIYRVS-ANGRKYSRVGKCSGSPITHLDWSSDSQF 505 (626)
T ss_pred cc-----eeEEEEec-CCceEEEEEcC-CCCEEEEe---cCCCeEEEEEEC-CCCcEEEEeeeecCceeEEeeecCCCce
Confidence 74 23444444 78899999999 99999986 799999999984 445443333 445578899999999988
Q ss_pred hhcc
Q 000080 2381 ALSK 2384 (2389)
Q Consensus 2381 ~~s~ 2384 (2389)
..+.
T Consensus 506 ~~~~ 509 (626)
T KOG2106|consen 506 LVSN 509 (626)
T ss_pred EEec
Confidence 7764
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.1e-06 Score=102.90 Aligned_cols=211 Identities=16% Similarity=0.248 Sum_probs=133.2
Q ss_pred eEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEE-EecCCeEEEEeeCCCCCCC
Q 000080 54 SWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLA-AASENCIFVFAHDSASSKG 132 (2389)
Q Consensus 54 ~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIa-ASyDntIRVw~~d~~~~kg 132 (2389)
.|+.+.+.+.++|+. --.. -|. .++.|. ..|.+-+|+|| +.-|+ |+-|+.|++|... |
T Consensus 77 ~~~i~s~DGkf~il~--k~~r-VE~--------sv~AH~--~A~~~gRW~~d---GtgLlt~GEDG~iKiWSrs-----G 135 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN--KSAR-VER--------SISAHA--AAISSGRWSPD---GAGLLTAGEDGVIKIWSRS-----G 135 (737)
T ss_pred eEEEEcCCceEEEec--ccch-hhh--------hhhhhh--hhhhhcccCCC---CceeeeecCCceEEEEecc-----c
Confidence 355566655666665 2111 121 234443 47999999998 44455 5669999999886 1
Q ss_pred CccceeeEEec-ccceEEEEeecCCCCeEEEEecc-eEEeeccCCcEEEEEEeeccccceEEEEeecCCCc-eEeeeccc
Q 000080 133 SFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME-TVLWKKKNTLWEIAWKFKENYPQNLVSATWSIEGP-SATAASMS 209 (2389)
Q Consensus 133 d~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD-V~IW~~~~s~Wecvwt~~~~~~~~ivsvaWSpdG~-fATag~di 209 (2389)
-. +.++. ....|++++|.|+++.++-|-.+ +-|=-....+-.+-|+ .|..-+.+++|++... +||+|.|.
T Consensus 136 ML----RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~Wk---AHDGiiL~~~W~~~s~lI~sgGED~ 208 (737)
T KOG1524|consen 136 ML----RSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWR---AHDGLVLSLSWSTQSNIIASGGEDF 208 (737)
T ss_pred hH----HHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEe---ccCcEEEEeecCccccceeecCCce
Confidence 11 22333 36689999999999999965555 5443344445555564 4666677999999877 99999999
Q ss_pred ccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeecCCc
Q 000080 210 QLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGK 289 (2389)
Q Consensus 210 kf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d~Gk 289 (2389)
||++| |+-....+.-.+|.-+|.+|+|+| | ...|-+|+ +|.|+=+
T Consensus 209 kfKvW--------------D~~G~~Lf~S~~~ey~ITSva~np--------d------~~~~v~S~-nt~R~~~------ 253 (737)
T KOG1524|consen 209 RFKIW--------------DAQGANLFTSAAEEYAITSVAFNP--------E------KDYLLWSY-NTARFSS------ 253 (737)
T ss_pred eEEee--------------cccCcccccCChhccceeeeeecc--------c------cceeeeee-eeeeecC------
Confidence 98877 333444566789999999999999 3 23555554 5666211
Q ss_pred ccccccccCCCCccceeEEEEEEEeecccccCCCCCCeEEEeeccccce
Q 000080 290 TRKVAKDTNDHKTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCM 338 (2389)
Q Consensus 290 ~kk~~~~~~d~~~~~~sF~vaA~I~~~~~~~~~l~~~~~v~W~~~~~~v 338 (2389)
.+++--|-++=++.=-|..-||--+-+++--+.++..+
T Consensus 254 -----------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~ 291 (737)
T KOG1524|consen 254 -----------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLV 291 (737)
T ss_pred -----------CCccceEEEEEcCCCceeeccccCceEEEeeeehhhhh
Confidence 23455566666666334333333333444444444444
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-06 Score=105.87 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=119.6
Q ss_pred cccccccccCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc---eeeEecccCCCCCCCCCCCCCEEEEEEC
Q 000080 2204 QDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPAANVPPPYALASISALQFD 2280 (2389)
Q Consensus 2204 ~~~~~~~~d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk---~l~Tl~vl~gh~~p~~GH~~~V~sVaFS 2280 (2389)
..++.+++..-.+. -+|++|.|||..+.|++|+.|+++||+.+. |+ .++.+. + -.-.|.+..|.
T Consensus 200 ~krlkDaNa~~ps~--~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-l---------~~fPi~~a~f~ 266 (514)
T KOG2055|consen 200 IKRLKDANAAHPSH--GGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-L---------EKFPIQKAEFA 266 (514)
T ss_pred eEeecccccCCcCc--CCceEEEecCCCceEEEecCCCcEEEEEec-CccChhheeee-e---------ccCccceeeec
Confidence 44555554222222 245999999999999999999999999995 54 233332 1 12458999999
Q ss_pred CCCC-EEEEEeCCCcEEEeeCCCCCccCcccceeeeecC-CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc
Q 000080 2281 HYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFS-SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2389)
Q Consensus 2281 PDG~-~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs-~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~ 2358 (2389)
|+|+ .+++++.-.-...||++++. ...+....|+. ..+..+..+| +|++||.+| ..|-|-|=-. .+++.
T Consensus 267 p~G~~~i~~s~rrky~ysyDle~ak---~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G---~~G~I~lLha--kT~el 337 (514)
T KOG2055|consen 267 PNGHSVIFTSGRRKYLYSYDLETAK---VTKLKPPYGVEEKSMERFEVSH-DSNFIAIAG---NNGHIHLLHA--KTKEL 337 (514)
T ss_pred CCCceEEEecccceEEEEeeccccc---cccccCCCCcccchhheeEecC-CCCeEEEcc---cCceEEeehh--hhhhh
Confidence 9998 99999999999999999873 23444444544 5567788999 999999997 6788888665 45666
Q ss_pred eEEEEeecCcEEEEeecccchhhhccc
Q 000080 2359 RASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2359 v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+.++. -++.|..++++.+|..++.-|
T Consensus 338 i~s~K-ieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 338 ITSFK-IEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred hheee-eccEEeeEEEecCCcEEEEEc
Confidence 78887 678899999999998877654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-06 Score=104.11 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=78.1
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCC
Q 000080 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA 2353 (2389)
Q Consensus 2274 V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~ 2353 (2389)
-.+++||+.|..||+|..||.|-+||+.|. .+-+.+.+|-.+|.+++||+ ||+.|.|+ |.|..|++||++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-----~iar~lsaH~~pi~sl~WS~-dgr~Llts---S~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-----RIARMLSAHVRPITSLCWSR-DGRKLLTS---SRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-----chhhhhhccccceeEEEecC-CCCEeeee---cCCceeEEEeccC
Confidence 689999999999999999999999999985 36677899999999999999 99999997 7999999999963
Q ss_pred CCCCceEEEEeecCcEEEEeeccc
Q 000080 2354 PPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2354 ~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
|.+++.+. -..+|+....+|-
T Consensus 97 --gs~l~rir-f~spv~~~q~hp~ 117 (405)
T KOG1273|consen 97 --GSPLKRIR-FDSPVWGAQWHPR 117 (405)
T ss_pred --CCceeEEE-ccCccceeeeccc
Confidence 55777765 4556666555553
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=113.02 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=105.0
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
.-+-++++-=++++|+.=+.|.+|++. +.....+ ..||.+.+.++.+|-||+++||.|+|+++|+|++++
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~p~~---------l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s 206 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPH-EDNKPIR---------LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS 206 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEecc-ccCCcce---------ecccCCceEEEEEccCCcEEEEEecCcceeeeeccc
Confidence 455678888899999999999999986 3322221 247899999999999999999999999999999998
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecC-cEEEEeecccchh
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG-LYDLFLPLKLLNF 2380 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~-~V~svA~~~~~~~ 2380 (2389)
+. ..--+.-||+..|+.+.|.| + .|+|+| +|-|.|+|+. .++.+..+.+|.+ .++.++.++.--+
T Consensus 207 ~~----~~~~~~fgHsaRvw~~~~~~-n--~i~t~g---edctcrvW~~---~~~~l~~y~~h~g~~iw~~~~~~~~~~ 272 (967)
T KOG0974|consen 207 RE----VLGCTGFGHSARVWACCFLP-N--RIITVG---EDCTCRVWGV---NGTQLEVYDEHSGKGIWKIAVPIGVII 272 (967)
T ss_pred cc----ccCcccccccceeEEEEecc-c--eeEEec---cceEEEEEec---ccceehhhhhhhhcceeEEEEcCCceE
Confidence 63 22246678999999999999 4 899984 9999999986 3444556666653 4566666554333
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=107.20 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=111.7
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc-eeeEe--cccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-ATATY--GVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk-~l~Tl--~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVk 2296 (2389)
.+|-+|+..+++..+.|||.||+||+|++.... .--++ .++.+ ...||++.|+.+++|+.-.+|+++|.|||||
T Consensus 345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~---~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr 421 (577)
T KOG0642|consen 345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG---TLLGHTDAVWLLALSSTKDRLLSCSSDGTVR 421 (577)
T ss_pred CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc---ceeccccceeeeeecccccceeeecCCceEE
Confidence 367899999999999999999999999654111 10111 01112 2468999999999999999999999999999
Q ss_pred EeeCCCCCc-------------------c--------------------Ccccceee--ee-----cCCCeeEEEEecCC
Q 000080 2297 TWQLEVGGR-------------------S--------------------NVRPMESC--LC-----FSSHAMDVSYITSS 2330 (2389)
Q Consensus 2297 LWDl~tggr-------------------s--------------------~~k~l~tl--~g-----Hs~~V~sVAFSP~D 2330 (2389)
+|+...... + ....+..+ .. -...++-|..+| .
T Consensus 422 ~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~ 500 (577)
T KOG0642|consen 422 LWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-T 500 (577)
T ss_pred eeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-C
Confidence 997643210 0 00000000 00 013455566777 7
Q ss_pred CCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2331 GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2331 GslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
+.+..++. +|+.||+.|. -+++.+++...|...++++|+.|.|-+..|
T Consensus 501 ~~~~~~~h---ed~~Ir~~dn--~~~~~l~s~~a~~~svtslai~~ng~~l~s 548 (577)
T KOG0642|consen 501 ADITFTAH---EDRSIRFFDN--KTGKILHSMVAHKDSVTSLAIDPNGPYLMS 548 (577)
T ss_pred CCeeEecc---cCCceecccc--cccccchheeeccceecceeecCCCceEEe
Confidence 77777764 9999999997 467889999999999999999999987665
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-07 Score=119.17 Aligned_cols=99 Identities=23% Similarity=0.308 Sum_probs=90.3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
.||.+.|+|+.|.-.|+.+.+||+|.-||+|..+++ .++.++.||++.++++|.+. ...++|++ |.|..||
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-----~~lAs~rGhs~ditdlavs~-~n~~iaaa---S~D~vIr 257 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-----RCLASCRGHSGDITDLAVSS-NNTMIAAA---SNDKVIR 257 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccch-----hhhccCCCCccccchhccch-hhhhhhhc---ccCceEE
Confidence 478899999999999999999999999999999886 57899999999999999998 66788875 7999999
Q ss_pred EeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2348 VWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2348 LWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
+|.. +.+..+.-|.||++.|+++|++|-
T Consensus 258 vWrl--~~~~pvsvLrghtgavtaiafsP~ 285 (1113)
T KOG0644|consen 258 VWRL--PDGAPVSVLRGHTGAVTAIAFSPR 285 (1113)
T ss_pred EEec--CCCchHHHHhccccceeeeccCcc
Confidence 9997 677778999999999999999884
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-06 Score=101.00 Aligned_cols=138 Identities=13% Similarity=0.057 Sum_probs=102.9
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCC------ceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKD------KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tG------k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT 2294 (2389)
.|.+|.|+-++++||||++|.++++|++..- +.+. +.+|. |..-|.+++|+.-.+++-||..|+|
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~----~~~~~-----H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG----VMEHP-----HRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce----eccCc-----cccceEEEEEccCCeeEecCCCcce
Confidence 4689999999999999999999999998622 2222 23442 6688999999999999999999999
Q ss_pred EEEeeCCCCCccCcccceeeeecCC---CeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCC-CCceEEEEeecCcEE
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSS---HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITCHEGLYD 2370 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~---~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~t-g~~v~sL~GH~~~V~ 2370 (2389)
|-+-|+++.. .+. ...|.. .|+.+.-+| ..+++|+. +.|+.|-+||....+ ....-++........
T Consensus 129 VI~HDiEt~q-----si~-V~~~~~~~~~VY~m~~~P-~DN~~~~~---t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 129 VIKHDIETKQ-----SIY-VANENNNRGDVYHMDQHP-TDNTLIVV---TRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred eEeeecccce-----eee-eecccCcccceeecccCC-CCceEEEE---ecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 9999999852 222 234555 899999999 56778775 699999999985433 222444554555555
Q ss_pred EEeeccc
Q 000080 2371 LFLPLKL 2377 (2389)
Q Consensus 2371 svA~~~~ 2377 (2389)
++.++|-
T Consensus 199 t~~F~P~ 205 (609)
T KOG4227|consen 199 TAEFHPE 205 (609)
T ss_pred eeeecCC
Confidence 5555553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-06 Score=100.35 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=87.2
Q ss_pred eEEEEEEcCCCCeEEE-Ee-CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc-EEE
Q 000080 2221 STRAFSSHPLRPFFLV-GS-SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT-VCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LAS-GS-~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT-VkL 2297 (2389)
++-++++|+.+.+||- || .-|.|.|||..+=+.+.++. + |.+.|.+++|||||++|||||+.|| ||+
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~---a-------H~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN---A-------HKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE---e-------cCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 4566666666678876 33 56899999998777777763 3 6789999999999999999999999 589
Q ss_pred eeCCCCCccCcccceeeeec--CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2298 WQLEVGGRSNVRPMESCLCF--SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gH--s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
..+..|. .++.++-- --.|++++|+| |+++|+++ |+-+||.|+.+
T Consensus 201 f~v~~G~-----kl~eFRRG~~~~~IySL~Fs~-ds~~L~~s---S~TeTVHiFKL 247 (391)
T KOG2110|consen 201 FSVPEGQ-----KLYEFRRGTYPVSIYSLSFSP-DSQFLAAS---SNTETVHIFKL 247 (391)
T ss_pred EEcCCcc-----EeeeeeCCceeeEEEEEEECC-CCCeEEEe---cCCCeEEEEEe
Confidence 9998873 22332211 24577999999 99999986 57889999987
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-05 Score=99.96 Aligned_cols=193 Identities=16% Similarity=0.305 Sum_probs=131.0
Q ss_pred CCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEEe--cC
Q 000080 40 STSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAA--SE 117 (2389)
Q Consensus 40 ~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaAS--yD 117 (2389)
...-+++.|| | +-+.-|+|+-+.++.. ..+ ..+ |.+.||.| -|-||||+-| |+..|| +|
T Consensus 14 ci~d~afkPD--G-sqL~lAAg~rlliyD~---ndG-~ll------qtLKgHKD--tVycVAys~d----GkrFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPD--G-TQLILAAGSRLLVYDT---SDG-TLL------QPLKGHKD--TVYCVAYAKD----GKRFASGSAD 74 (1081)
T ss_pred chheeEECCC--C-ceEEEecCCEEEEEeC---CCc-ccc------cccccccc--eEEEEEEccC----CceeccCCCc
Confidence 5677899999 7 4677899999999972 223 345 89999999 8999999997 777764 58
Q ss_pred CeEEEEeeCCCCCCCCccceeeEEe--cccceEEEEeecCCCCeEEEEec-ceEEeeccCCcEEEEEEeeccccceEEEE
Q 000080 118 NCIFVFAHDSASSKGSFCWSQNAIL--VQGTKVEAIEWTGSGDGIVAGGM-ETVLWKKKNTLWEIAWKFKENYPQNLVSA 194 (2389)
Q Consensus 118 ntIRVw~~d~~~~kgd~~W~~~~tL--~hssTV~sIAWSpdG~rLaSggd-DV~IW~~~~s~Wecvwt~~~~~~~~ivsv 194 (2389)
+.|-||.+.- .| +| .|+..|.+++|+|....|+||+- |-.+|...... | .+.....-+.+.
T Consensus 75 K~VI~W~~kl---EG--------~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~---V--~K~kss~R~~~C 138 (1081)
T KOG1538|consen 75 KSVIIWTSKL---EG--------ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS---V--SKHKSSSRIICC 138 (1081)
T ss_pred eeEEEecccc---cc--------eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh---H--HhhhhheeEEEe
Confidence 9999998751 12 22 38889999999999999999998 59999743211 1 111122235578
Q ss_pred eecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccCceEEee
Q 000080 195 TWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTC 273 (2389)
Q Consensus 195 aWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILASc 273 (2389)
+|.-||. ||-+-++....+.+... .+.+-|. -..+-..+|.+|+|+|.+ + ....++++-.
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~----------Rpgg~Nspiwsi~~~p~s-----g---~G~~di~aV~ 199 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNKNG-EEKVKIE----------RPGGSNSPIWSICWNPSS-----G---EGRNDILAVA 199 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecCCC-CcceEEe----------CCCCCCCCceEEEecCCC-----C---CCccceEEEE
Confidence 9999999 88876644422221100 0111111 123455899999999942 2 2345777777
Q ss_pred ecCCeEEEEEeec
Q 000080 274 CLDGTVRLWCEMD 286 (2389)
Q Consensus 274 SdDgTVRLW~e~d 286 (2389)
--..|.-.+...+
T Consensus 200 DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 200 DWGQTLSFYQLSG 212 (1081)
T ss_pred eccceeEEEEecc
Confidence 7777777777654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.5e-06 Score=103.49 Aligned_cols=145 Identities=11% Similarity=0.113 Sum_probs=116.7
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|+++||+.+.+.||.|=.||.|.||++..+.+.... ++|+ ....|.+++|+ +|.+|-|.+.+|+|.-||+
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v--i~g~------~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV--IHGP------EDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEE--EecC------CCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 4699999999999999999999999999999865543 2332 34679999999 6668889999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCce--EEEEeecCcEEEEeecccc
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR--ASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v--~sL~GH~~~V~svA~~~~~ 2378 (2389)
.++ ++.+.+.+..+.++++|.+| .++.+|-+ ++||.+..-+. .++... ..|.-.+++|-+|+.+|+|
T Consensus 98 ~~l-----k~~~~~d~~gg~IWsiai~p-~~~~l~Ig---cddGvl~~~s~--~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 98 HTL-----KQKYNIDSNGGAIWSIAINP-ENTILAIG---CDDGVLYDFSI--GPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred ccC-----ceeEEecCCCcceeEEEeCC-ccceEEee---cCCceEEEEec--CCceEEEEeecccccceEEEEEecCCc
Confidence 986 57788888999999999999 77888874 69996555554 444442 4567677889999999998
Q ss_pred hhhhccc
Q 000080 2379 NFALSKC 2385 (2389)
Q Consensus 2379 ~~~~s~~ 2385 (2389)
-.+..-|
T Consensus 167 ~~i~~Gs 173 (691)
T KOG2048|consen 167 TKIAGGS 173 (691)
T ss_pred cEEEecc
Confidence 8666554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=97.50 Aligned_cols=140 Identities=15% Similarity=0.133 Sum_probs=107.6
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe--CCCcEEEe
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--LDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS--~DgTVkLW 2298 (2389)
+|-+|.++. +.|+..=.+. |+|+|+.+=+.+.|+...|. |-..+.++.+++.+.++|-=+ .-|.|.||
T Consensus 89 ~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~-------n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 89 SILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPP-------NPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred ceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCC-------CccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 346666665 4466655554 99999998888888753222 235688888888888888633 35899999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCe-EEEeeCCCCCCCceEEEEee--cCcEEEEeec
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN-VVVWDTLAPPTSSRASITCH--EGLYDLFLPL 2375 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~T-VrLWD~l~~tg~~v~sL~GH--~~~V~svA~~ 2375 (2389)
|+.+- +++.++.+|.+.+.++||+| ||.+|||| |+.|| ||+..+ +.|+.++.|.-- .-.|.+++|+
T Consensus 159 d~~nl-----~~v~~I~aH~~~lAalafs~-~G~llATA---SeKGTVIRVf~v--~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 159 DTINL-----QPVNTINAHKGPLAALAFSP-DGTLLATA---SEKGTVIRVFSV--PEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred Ecccc-----eeeeEEEecCCceeEEEECC-CCCEEEEe---ccCceEEEEEEc--CCccEeeeeeCCceeeEEEEEEEC
Confidence 99863 78899999999999999999 99999998 45555 899998 778888777433 3456699999
Q ss_pred ccchhh
Q 000080 2376 KLLNFA 2381 (2389)
Q Consensus 2376 ~~~~~~ 2381 (2389)
|++.|.
T Consensus 228 ~ds~~L 233 (391)
T KOG2110|consen 228 PDSQFL 233 (391)
T ss_pred CCCCeE
Confidence 999864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.3e-06 Score=103.25 Aligned_cols=140 Identities=9% Similarity=0.040 Sum_probs=92.3
Q ss_pred EEEEEcCCCCeEEEE-eCCC--cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC-CcEEEe
Q 000080 2223 RAFSSHPLRPFFLVG-SSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-GTVCTW 2298 (2389)
Q Consensus 2223 rsVAFsPdG~~LASG-S~Dg--TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D-gTVkLW 2298 (2389)
.+++|+|||+.|+.. +.++ .|++||+.+|+..+... +...+...+|||||+.|+.++.+ +..+||
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-----------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-----------CCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence 346899999988754 4444 59999998887543221 12457889999999999888865 556666
Q ss_pred --eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2299 --QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2299 --Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
|+.++. ...+..+.......+|+| ||+.||.++....+..|.+||+ .+++ .+.|.. .......+++|
T Consensus 315 ~~d~~~g~------~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl--~~g~-~~~Lt~-~~~~~~p~~Sp 383 (429)
T PRK03629 315 KVNINGGA------PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDL--ATGG-VQVLTD-TFLDETPSIAP 383 (429)
T ss_pred EEECCCCC------eEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEEC--CCCC-eEEeCC-CCCCCCceECC
Confidence 555441 223333444566789999 9999988652223356888997 3333 455542 22234677889
Q ss_pred cchhhhcc
Q 000080 2377 LLNFALSK 2384 (2389)
Q Consensus 2377 ~~~~~~s~ 2384 (2389)
+|++++.-
T Consensus 384 DG~~i~~~ 391 (429)
T PRK03629 384 NGTMVIYS 391 (429)
T ss_pred CCCEEEEE
Confidence 99987653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-06 Score=104.90 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=105.5
Q ss_pred ccccccceeeccccccccccccc------cCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEec----
Q 000080 2189 PGYAGIGASALGWETQDDFEDYV------DPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYG---- 2258 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~------d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~---- 2258 (2389)
.|.+..+|.| |-|..-|+|++- +..++- -.|..++|+|||++|||-+.| ..++|++.+|-+++...
T Consensus 153 ~~~gs~latg-g~dg~lRv~~~Ps~~t~l~e~~~~--~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k 228 (398)
T KOG0771|consen 153 NGDGSKLATG-GTDGTLRVWEWPSMLTILEEIAHH--AEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSK 228 (398)
T ss_pred cCCCCEeeec-cccceEEEEecCcchhhhhhHhhc--CccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCccc
Confidence 3444556666 667777777652 111221 256899999999999999999 89999999994332221
Q ss_pred ----------------------c-cCCCCCC------CCC-----------CCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2259 ----------------------V-LPAANVP------PPY-----------ALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2259 ----------------------v-l~gh~~p------~~G-----------H~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
. .|+..+. .-+ -...|++++.|+||+++|-|+.||.|-+.
T Consensus 229 ~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~ 308 (398)
T KOG0771|consen 229 DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIY 308 (398)
T ss_pred chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEE
Confidence 0 0111000 000 01469999999999999999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
++.+-. .....-+.|...|.+|+|+| |.+.+++. |.|.++.|--+
T Consensus 309 ~~~~lq----~~~~vk~aH~~~VT~ltF~P-dsr~~~sv---Ss~~~~~v~~l 353 (398)
T KOG0771|consen 309 DAKSLQ----RLQYVKEAHLGFVTGLTFSP-DSRYLASV---SSDNEAAVTKL 353 (398)
T ss_pred Eeceee----eeEeehhhheeeeeeEEEcC-CcCccccc---ccCCceeEEEE
Confidence 998642 22333467999999999999 88999985 57777777665
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-06 Score=101.37 Aligned_cols=113 Identities=13% Similarity=0.207 Sum_probs=92.1
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCC--ce-eeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KA-TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tG--k~-l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL 2297 (2389)
+|.++.|.+.-..=++|+.|-.+-.|.+... .+ ++....+ .| ..|..|.+-|||+.||||++|+.||+
T Consensus 207 pvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l--------kn-pGv~gvrIRpD~KIlATAGWD~RiRV 277 (323)
T KOG0322|consen 207 PVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL--------KN-PGVSGVRIRPDGKILATAGWDHRIRV 277 (323)
T ss_pred cceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe--------cC-CCccceEEccCCcEEeecccCCcEEE
Confidence 6788899987777789999999999997643 32 1111100 11 44899999999999999999999999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
+.-++. +|+.-+.-|++.|++|||+| |..++|+| |.|.+|-||++
T Consensus 278 yswrtl-----~pLAVLkyHsagvn~vAfsp-d~~lmAaa---skD~rISLWkL 322 (323)
T KOG0322|consen 278 YSWRTL-----NPLAVLKYHSAGVNAVAFSP-DCELMAAA---SKDARISLWKL 322 (323)
T ss_pred EEeccC-----CchhhhhhhhcceeEEEeCC-CCchhhhc---cCCceEEeeec
Confidence 999986 57888888999999999999 77999987 69999999985
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.2e-06 Score=102.52 Aligned_cols=138 Identities=12% Similarity=0.001 Sum_probs=92.1
Q ss_pred EEEEEcCCCCeEE-EEeCCCc--EEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CC--cEE
Q 000080 2223 RAFSSHPLRPFFL-VGSSNTH--IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DG--TVC 2296 (2389)
Q Consensus 2223 rsVAFsPdG~~LA-SGS~DgT--IRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-Dg--TVk 2296 (2389)
.+.+|+|||+.|+ +.+.|+. |++||+.+++..+ +. . +...++..+|||||++||.++. +| .|.
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt---~-------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy 317 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LT---D-------SPAIDTSPSYSPDGSQIVFESDRSGSPQLY 317 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-cc---C-------CCCccCceeEcCCCCEEEEEECCCCCCeEE
Confidence 4568999999765 5566655 7788988776533 32 1 2244677899999999998874 33 577
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
+||+.++. ...+..+...+...+|+| ||+.||.......+..|.+||+ .++..+.+. +...+...+++|
T Consensus 318 ~~d~~g~~------~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~---~~~~~~~lt-~~~~~~~p~~sp 386 (435)
T PRK05137 318 VMNADGSN------PRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKP---DGSGERILT-SGFLVEGPTWAP 386 (435)
T ss_pred EEECCCCC------eEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEEC---CCCceEecc-CCCCCCCCeECC
Confidence 77887542 233333445566788999 9999987643223357888886 233444443 233567888999
Q ss_pred cchhhh
Q 000080 2377 LLNFAL 2382 (2389)
Q Consensus 2377 ~~~~~~ 2382 (2389)
+|++++
T Consensus 387 DG~~i~ 392 (435)
T PRK05137 387 NGRVIM 392 (435)
T ss_pred CCCEEE
Confidence 999865
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=99.30 Aligned_cols=139 Identities=9% Similarity=0.001 Sum_probs=90.5
Q ss_pred eEEEEEEcCCCCeEEEEeCC---CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE-EEeCCC--c
Q 000080 2221 STRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDG--T 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~D---gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA-SgS~Dg--T 2294 (2389)
.+.+.+|+|||+.||..+.+ ..|.+||+.+|+..+... .+ +.+.+.+|||||++|| +.+.+| .
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~----------g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FE----------GLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CC----------CCcCCeEECCCCCEEEEEEccCCCce
Confidence 34778999999999887754 469999998887543211 11 2345789999999988 455555 5
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC--eEEEeeCCCCCCCceEEEEeecCcEEEE
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGLYDLF 2372 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~--TVrLWD~l~~tg~~v~sL~GH~~~V~sv 2372 (2389)
|.+||++++. ...+..+.....+.+|+| ||+.|+..+ ..++ .|.++|+ .+++ +..+..........
T Consensus 269 Iy~~d~~~~~------~~~lt~~~~~~~~~~~sp-Dg~~i~f~s--~~~g~~~iy~~d~--~~g~-~~~lt~~~~~~~~~ 336 (430)
T PRK00178 269 IYVMDLASRQ------LSRVTNHPAIDTEPFWGK-DGRTLYFTS--DRGGKPQIYKVNV--NGGR-AERVTFVGNYNARP 336 (430)
T ss_pred EEEEECCCCC------eEEcccCCCCcCCeEECC-CCCEEEEEE--CCCCCceEEEEEC--CCCC-EEEeecCCCCccce
Confidence 7777998752 233445555666789999 899887653 2333 4666665 3444 33333222223456
Q ss_pred eecccchhhh
Q 000080 2373 LPLKLLNFAL 2382 (2389)
Q Consensus 2373 A~~~~~~~~~ 2382 (2389)
+.+|+|++++
T Consensus 337 ~~Spdg~~i~ 346 (430)
T PRK00178 337 RLSADGKTLV 346 (430)
T ss_pred EECCCCCEEE
Confidence 7788888764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.3e-06 Score=102.00 Aligned_cols=139 Identities=17% Similarity=0.071 Sum_probs=89.6
Q ss_pred EEEEEcCCCCeEE-EEeCCC--cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCc--EE
Q 000080 2223 RAFSSHPLRPFFL-VGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGT--VC 2296 (2389)
Q Consensus 2223 rsVAFsPdG~~LA-SGS~Dg--TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgT--Vk 2296 (2389)
.+.+|+|||+.|+ +.+.++ .|++||+.+|+..+ +. . |......++|+|||++|+.++. +|. |.
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt---~-------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT---N-------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc---c-------CCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 3568999999765 555555 69999998887543 22 1 2234567899999999998874 455 55
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
++|+.++. ...+.-+......++|+| ||+.||.......+..|.+||+ .+++ .+.|. +.......+.+|
T Consensus 320 ~~dl~~g~------~~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~--~~g~-~~~Lt-~~~~~~~p~~sp 388 (433)
T PRK04922 320 RVAASGGS------AERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDL--STGS-VRTLT-PGSLDESPSFAP 388 (433)
T ss_pred EEECCCCC------eEEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEEC--CCCC-eEECC-CCCCCCCceECC
Confidence 55666542 122222333445689999 9999987532122346999997 3333 34454 333455778999
Q ss_pred cchhhhc
Q 000080 2377 LLNFALS 2383 (2389)
Q Consensus 2377 ~~~~~~s 2383 (2389)
+|++++-
T Consensus 389 dG~~i~~ 395 (433)
T PRK04922 389 NGSMVLY 395 (433)
T ss_pred CCCEEEE
Confidence 9998753
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=100.63 Aligned_cols=140 Identities=10% Similarity=0.018 Sum_probs=88.9
Q ss_pred EEEEEEcCCCCeEEEEeCC---CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEE-EeCCCc--E
Q 000080 2222 TRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGT--V 2295 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~D---gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LAS-gS~DgT--V 2295 (2389)
+.+.+|+|||+.|+..+.+ ..|++||+.+|+... +...+ ....+.+|||||+.||. .+.||. |
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~----------g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP----------GINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC----------CCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 4667999999998877643 258999998887532 21111 12346899999998875 566675 6
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeec
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~ 2375 (2389)
.+||++++. ...+..+.......+|+| ||+.|+.++ ..++..+||.+...+++ ...+..+.......+.+
T Consensus 289 y~~dl~tg~------~~~lt~~~~~~~~p~wSp-DG~~I~f~s--~~~g~~~Iy~~dl~~g~-~~~Lt~~g~~~~~~~~S 358 (448)
T PRK04792 289 YVVDIATKA------LTRITRHRAIDTEPSWHP-DGKSLIFTS--ERGGKPQIYRVNLASGK-VSRLTFEGEQNLGGSIT 358 (448)
T ss_pred EEEECCCCC------eEECccCCCCccceEECC-CCCEEEEEE--CCCCCceEEEEECCCCC-EEEEecCCCCCcCeeEC
Confidence 677887652 234444555667899999 999888753 23444445443223343 44443222223456889
Q ss_pred ccchhhh
Q 000080 2376 KLLNFAL 2382 (2389)
Q Consensus 2376 ~~~~~~~ 2382 (2389)
|+|++++
T Consensus 359 pDG~~l~ 365 (448)
T PRK04792 359 PDGRSMI 365 (448)
T ss_pred CCCCEEE
Confidence 9998753
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.4e-06 Score=103.45 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=108.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.+-.|+|||.=|+|+++||.||+|. ++|-+..|+.+ ....|+|+++.|+.+.+.-+-.| .+.+=-+
T Consensus 106 A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q----------~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL 173 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQ----------NEESIRCARWAPNSNSIVFCQGG-HISIKPL 173 (737)
T ss_pred hhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhh----------cCceeEEEEECCCCCceEEecCC-eEEEeec
Confidence 345668999999999999999999999 57866655531 12569999999998766655443 3444333
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
... .....+.+|.+-|.++.|+| ...+||||| +|-.-||||- .|..+..=+.|+-+|++||+-|+-.|
T Consensus 174 ~~n-----~k~i~WkAHDGiiL~~~W~~-~s~lI~sgG---ED~kfKvWD~---~G~~Lf~S~~~ey~ITSva~npd~~~ 241 (737)
T KOG1524|consen 174 AAN-----SKIIRWRAHDGLVLSLSWST-QSNIIASGG---EDFRFKIWDA---QGANLFTSAAEEYAITSVAFNPEKDY 241 (737)
T ss_pred ccc-----cceeEEeccCcEEEEeecCc-cccceeecC---CceeEEeecc---cCcccccCChhccceeeeeeccccce
Confidence 321 23456789999999999999 789999985 9999999995 57777777789999999999999988
Q ss_pred hhc
Q 000080 2381 ALS 2383 (2389)
Q Consensus 2381 ~~s 2383 (2389)
||-
T Consensus 242 ~v~ 244 (737)
T KOG1524|consen 242 LLW 244 (737)
T ss_pred eee
Confidence 873
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.6e-06 Score=102.25 Aligned_cols=119 Identities=8% Similarity=0.050 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
++.+...........++++..+.+|....|.+... .||...|+.|++|||++++.+++.|..||+=..-
T Consensus 113 i~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~-----------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 113 ISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI-----------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred eeeeeccceEEEEeecCCceeeeeecccccCcchh-----------hhhhhhhheeeecCCCCEEEEecCCceEEEEecC
Confidence 35566666666666778888888888866665444 4789999999999999999999999999975433
Q ss_pred CCCccCccccee-eeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2302 VGGRSNVRPMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2302 tggrs~~k~l~t-l~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
.. ..+.+ +.||...|..++.-+ ++.|+|| |.|+|||+||+ .++++++++.
T Consensus 182 a~-----f~IesfclGH~eFVS~isl~~--~~~LlS~---sGD~tlr~Wd~--~sgk~L~t~d 232 (390)
T KOG3914|consen 182 AT-----FVIESFCLGHKEFVSTISLTD--NYLLLSG---SGDKTLRLWDI--TSGKLLDTCD 232 (390)
T ss_pred cc-----cchhhhccccHhheeeeeecc--Cceeeec---CCCCcEEEEec--ccCCcccccc
Confidence 21 22333 468999999999997 5778886 48999999998 5777776654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-05 Score=92.99 Aligned_cols=151 Identities=21% Similarity=0.349 Sum_probs=99.4
Q ss_pred CCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccc---cccccceeeeeccCCCCCeeEEEEcCCCCCCCcEE-
Q 000080 38 TRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEA---LIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLA- 113 (2389)
Q Consensus 38 ~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~---~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIa- 113 (2389)
-|.+..++|-|- +..-+|.|--..+-|-..+. ..+-.+ .-+.-=-|++.+.+| .+|++.+|.|| ++.++
T Consensus 140 QrnvtclawRPl--saselavgCr~gIciW~~s~-tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d---gt~l~t 212 (445)
T KOG2139|consen 140 QRNVTCLAWRPL--SASELAVGCRAGICIWSDSR-TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED---GTILVT 212 (445)
T ss_pred hcceeEEEeccC--CcceeeeeecceeEEEEcCc-ccccccccccccccchhheeCCCC-ceeeEEEEcCC---CCEEee
Confidence 366778999986 33455555555555544322 222111 001111277777666 59999999998 66666
Q ss_pred Eec-CCeEEEEeeCCCCCCCCccceeeEEec--ccceEEEEeecCCCCeEEEEecc--eEEeeccCCcEEEEEEeecccc
Q 000080 114 AAS-ENCIFVFAHDSASSKGSFCWSQNAILV--QGTKVEAIEWTGSGDGIVAGGME--TVLWKKKNTLWEIAWKFKENYP 188 (2389)
Q Consensus 114 ASy-DntIRVw~~d~~~~kgd~~W~~~~tL~--hssTV~sIAWSpdG~rLaSggdD--V~IW~~~~s~Wecvwt~~~~~~ 188 (2389)
||+ |..|+||.++.+ ....|. .-+-+.-+.|||||+.|.++..| -++|+....-|..=|-+. +
T Consensus 213 AS~gsssi~iWdpdtg---------~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg---s 280 (445)
T KOG2139|consen 213 ASFGSSSIMIWDPDTG---------QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG---S 280 (445)
T ss_pred cccCcceEEEEcCCCC---------CcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc---C
Confidence 565 589999999821 111222 34567789999999999988887 789988777777777543 2
Q ss_pred ceEEEEeecCCCc--eEeeec
Q 000080 189 QNLVSATWSIEGP--SATAAS 207 (2389)
Q Consensus 189 ~~ivsvaWSpdG~--fATag~ 207 (2389)
..+-..-|+|+|. +-+|++
T Consensus 281 grvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 281 GRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred CceeeeeecCCCCEEEEEEcC
Confidence 3455778999998 666666
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=92.70 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=104.0
Q ss_pred cceeecCCCCCCeE--EEEecCCc-EEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEEec--
Q 000080 42 STIDWLPDFAGYSW--VAYGASSL-LVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAAS-- 116 (2389)
Q Consensus 42 ~ai~wlpD~~G~~~--vAYasg~~-vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaASy-- 116 (2389)
..+.|+||.+++.+ ++|..|.. |.+..+.. + +.. ++-...+ .....+|||| +..||...
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~---g-~~~------~lt~~~g---~~~~p~wSPD---G~~Laf~s~~ 251 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN---P-AGK------KILALQG---NQLMPTFSPR---KKLLAFISDR 251 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCC---C-Cce------EeecCCC---CccceEECCC---CCEEEEEECC
Confidence 46799999655423 45555543 44445432 3 211 2322222 2556899999 66777433
Q ss_pred CCeEEE----EeeCCCCCCCCccceeeEEec-c-cceEEEEeecCCCCeEEEEecc---eEEeecc----CCcEEEEEEe
Q 000080 117 ENCIFV----FAHDSASSKGSFCWSQNAILV-Q-GTKVEAIEWTGSGDGIVAGGME---TVLWKKK----NTLWEIAWKF 183 (2389)
Q Consensus 117 DntIRV----w~~d~~~~kgd~~W~~~~tL~-h-ssTV~sIAWSpdG~rLaSggdD---V~IW~~~----~s~Wecvwt~ 183 (2389)
++.-.+ |..+.. ..+. ...++ . ...+...+|+|||++|+..++. .+||... .+.-+.+
T Consensus 252 ~g~~di~~~~~~~~~g-~~g~-----~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l--- 322 (428)
T PRK01029 252 YGNPDLFIQSFSLETG-AIGK-----PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL--- 322 (428)
T ss_pred CCCcceeEEEeecccC-CCCc-----ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe---
Confidence 222223 332210 0011 11222 2 2345678999999999977752 5677532 1111222
Q ss_pred eccccceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCC
Q 000080 184 KENYPQNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDT 262 (2389)
Q Consensus 184 ~~~~~~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dg 262 (2389)
. .+...+...+|||||. +|.++.... ..-++++..++.. . .........+....|+| ||
T Consensus 323 t-~~~~~~~~p~wSPDG~~Laf~~~~~g---------~~~I~v~dl~~g~-~-~~Lt~~~~~~~~p~wSp--------DG 382 (428)
T PRK01029 323 T-KKYRNSSCPAWSPDGKKIAFCSVIKG---------VRQICVYDLATGR-D-YQLTTSPENKESPSWAI--------DS 382 (428)
T ss_pred c-cCCCCccceeECCCCCEEEEEEcCCC---------CcEEEEEECCCCC-e-EEccCCCCCccceEECC--------CC
Confidence 1 1223445679999999 887765311 1235555333222 1 12222345678899999 66
Q ss_pred ccccCceEEeeecCCeEEEEEee-cCCcc
Q 000080 263 KRSQRHVLLTCCLDGTVRLWCEM-DSGKT 290 (2389)
Q Consensus 263 k~~~~nILAScSdDgTVRLW~e~-d~Gk~ 290 (2389)
+. |+.++..++.-.||... +.|+.
T Consensus 383 ~~----L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 383 LH----LVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CE----EEEEECCCCCceEEEEECCCCCE
Confidence 66 44566666655666544 33444
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-05 Score=93.50 Aligned_cols=186 Identities=16% Similarity=0.232 Sum_probs=109.4
Q ss_pred EEEecCCcEEEEeCCCCcccccccccccceeeeec-cCCCCCeeEEEEcCCCCCCCcEEEecCCeEEEEeeCCCCCCCCc
Q 000080 56 VAYGASSLLVISHFPSPLSQEEALIGPIFRQVFAL-SDNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKGSF 134 (2389)
Q Consensus 56 vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qvieg-h~d~~dVk~VaWSPd~~~~GeIaASyDntIRVw~~d~~~~kgd~ 134 (2389)
.|.|..+++|... +-.+. +. .++.. ++ .+|+|++|-|- +..+++.++-..|++|..+...+.+..
T Consensus 113 fava~nddvVriy--~ksst--~p------t~Lks~sQ--rnvtclawRPl--saselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 113 FAVATNDDVVRIY--DKSST--CP------TKLKSVSQ--RNVTCLAWRPL--SASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred hhhhccCcEEEEe--ccCCC--CC------ceecchhh--cceeEEEeccC--CcceeeeeecceeEEEEcCcccccccc
Confidence 4666667777666 21111 12 23332 22 37999999996 556788888889999988742111110
Q ss_pred ----cceeeEEec--ccceEEEEeecCCCCeEEEEecc---eEEeeccCCcEEEEEEeeccccceEEEEeecCCCc--eE
Q 000080 135 ----CWSQNAILV--QGTKVEAIEWTGSGDGIVAGGME---TVLWKKKNTLWEIAWKFKENYPQNLVSATWSIEGP--SA 203 (2389)
Q Consensus 135 ----~W~~~~tL~--hssTV~sIAWSpdG~rLaSggdD---V~IW~~~~s~Wecvwt~~~~~~~~ivsvaWSpdG~--fA 203 (2389)
.=.+.+.+. ..-.|.+++|++||.+|++++.+ +.||+-..+...-+ ...+...+--..|||||. ||
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL---~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL---IPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc---cccCCCceeeEEEcCCCCEEEE
Confidence 112333443 35689999999999999999997 99999665554322 112223332348999998 55
Q ss_pred eeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEE
Q 000080 204 TAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWC 283 (2389)
Q Consensus 204 Tag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~ 283 (2389)
+... ..|..|...+ .|.. +.. -.-++.|..-.|+| +|+. +|.+|+. .=+|+.
T Consensus 256 At~d-avfrlw~e~q----~wt~--------erw-~lgsgrvqtacWsp--------cGsf----LLf~~sg--sp~lys 307 (445)
T KOG2139|consen 256 ATCD-AVFRLWQENQ----SWTK--------ERW-ILGSGRVQTACWSP--------CGSF----LLFACSG--SPRLYS 307 (445)
T ss_pred eccc-ceeeeehhcc----ccee--------cce-eccCCceeeeeecC--------CCCE----EEEEEcC--CceEEE
Confidence 4433 2234441111 0100 000 12345788889999 5555 6777764 456666
Q ss_pred eec
Q 000080 284 EMD 286 (2389)
Q Consensus 284 e~d 286 (2389)
..=
T Consensus 308 l~f 310 (445)
T KOG2139|consen 308 LTF 310 (445)
T ss_pred Eee
Confidence 663
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=105.52 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=89.6
Q ss_pred EEEcCC---CCeEEEEeCCCcEEEeecCCCcee---eEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2225 FSSHPL---RPFFLVGSSNTHIYLWEFGKDKAT---ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2225 VAFsPd---G~~LASGS~DgTIRLWDl~tGk~l---~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
..|++. ..+||-+-+||.|.|+|..+-.-. +.|. -++.|.+.|..++.-|-.-+|+++++|.|+|+|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk-------~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK-------KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc-------ccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 456653 347999999999999998643311 1122 134578999999999955799999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
|+++++ +.-...+.||.+.|.++||.|.|-.+++||| .|+.|.|||+.
T Consensus 128 dvk~s~---l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg---RDg~illWD~R 175 (720)
T KOG0321|consen 128 DVKTSR---LVGGRLNLGHTGSVKSECFMPTNPAVFCTGG---RDGEILLWDCR 175 (720)
T ss_pred eeccce---eecceeecccccccchhhhccCCCcceeecc---CCCcEEEEEEe
Confidence 999863 1223347899999999999997777888864 99999999984
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=99.87 Aligned_cols=141 Identities=10% Similarity=0.003 Sum_probs=88.9
Q ss_pred EEEEEcCCCCeEE-EEeCCCcEEEeec--CCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCcEEEe
Q 000080 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEF--GKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTW 2298 (2389)
Q Consensus 2223 rsVAFsPdG~~LA-SGS~DgTIRLWDl--~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgTVkLW 2298 (2389)
.+.+|+|||+.|+ +.+.|+..+||.+ ..+. ++.+. . |...+....|||||++|+.++. +|...||
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt---~-------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy 311 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT---Q-------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIY 311 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC---C-------CCCCCcCeEEcCCCCEEEEEecCCCCcEEE
Confidence 4679999999876 5678888777764 3333 33332 1 2234567889999999987765 5788888
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
.+...+. . ...+.-+.......+|+| ||+.||.++....+..|.+||+ .+++ .+.+..+ ......+++|+|
T Consensus 312 ~~~~~~g-~---~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~--~~g~-~~~lt~~-~~~~~p~~spdg 382 (427)
T PRK02889 312 RMPASGG-A---AQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDL--ATGQ-VTALTDT-TRDESPSFAPNG 382 (427)
T ss_pred EEECCCC-c---eEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEEC--CCCC-eEEccCC-CCccCceECCCC
Confidence 7653211 1 111221223344688999 9999997642222237999997 3343 3444422 344678899999
Q ss_pred hhhhc
Q 000080 2379 NFALS 2383 (2389)
Q Consensus 2379 ~~~~s 2383 (2389)
++++-
T Consensus 383 ~~l~~ 387 (427)
T PRK02889 383 RYILY 387 (427)
T ss_pred CEEEE
Confidence 87654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.1e-05 Score=99.11 Aligned_cols=134 Identities=11% Similarity=0.147 Sum_probs=93.9
Q ss_pred EEEEEEcC-CCCeEEEEeCCCcEEEeecCCCc---eeeEecccCCCCCCCCCCCCC--EEEEEECCCCC-EEEEEeCCCc
Q 000080 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPAANVPPPYALAS--ISALQFDHYGH-RFASAALDGT 2294 (2389)
Q Consensus 2222 VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk---~l~Tl~vl~gh~~p~~GH~~~--V~sVaFSPDG~-~LASgS~DgT 2294 (2389)
|++++-+. .|.+||.|=.||.||+||.+-.- .+..++ . |.+. |..+.|.+.|- .|+|||.||.
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---~-------h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR---E-------HNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeec---c-------cCCcccceeEEeecCCCcceeeeccCCe
Confidence 45554333 37899999999999999987442 455565 2 4455 99999999885 5999999999
Q ss_pred EEEeeCCCCCccCcccceeeeecC--C-CeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec-----
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFS--S-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE----- 2366 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs--~-~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~----- 2366 (2389)
|++||++...+ ..+.+...|. + ..+++..++ ...+||||+ . +.|+||++ .|+.+..+..++
T Consensus 1281 I~~~DlR~~~~---e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs---~-q~ikIy~~---~G~~l~~~k~n~~F~~q 1349 (1387)
T KOG1517|consen 1281 IQLLDLRMSSK---ETFLTIVAHWEYGSALTALTVHE-HAPIIASGS---A-QLIKIYSL---SGEQLNIIKYNPGFMGQ 1349 (1387)
T ss_pred EEEEecccCcc---cccceeeeccccCccceeeeecc-CCCeeeecC---c-ceEEEEec---ChhhhcccccCcccccC
Confidence 99999997321 2334444444 3 377888888 789999963 4 89999998 344444443332
Q ss_pred --CcEEEEeecc
Q 000080 2367 --GLYDLFLPLK 2376 (2389)
Q Consensus 2367 --~~V~svA~~~ 2376 (2389)
+.+.|+++||
T Consensus 1350 ~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHP 1361 (1387)
T ss_pred cCCCcceeeecc
Confidence 3456777776
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=97.88 Aligned_cols=143 Identities=11% Similarity=0.042 Sum_probs=90.6
Q ss_pred EEEEcCCCCeEEEEeC-----CCcEEEeecCCC---ceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CCCc
Q 000080 2224 AFSSHPLRPFFLVGSS-----NTHIYLWEFGKD---KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGT 2294 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS~-----DgTIRLWDl~tG---k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~DgT 2294 (2389)
..+|||||+.||-.++ |-.+.+||+.+| +..+... + +.+.+...+|||||+.||..+ .+|.
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~---~-------~~~~~~~p~wSPDG~~Laf~s~~~g~ 304 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN---E-------AFGTQGNPSFSPDGTRLVFVSNKDGR 304 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec---C-------CCCCcCCeEECCCCCEEEEEECCCCC
Confidence 4589999998886553 334555887653 3222221 1 113346789999999999876 4777
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
.+||.+...+. . .....+..+...+...+||| ||+.||..+.......|.+||+ .+++ .+.+......+...+.
T Consensus 305 ~~ly~~~~~~~-g-~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl--~~g~-~~~Lt~~~~~~~~p~w 378 (428)
T PRK01029 305 PRIYIMQIDPE-G-QSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDL--ATGR-DYQLTTSPENKESPSW 378 (428)
T ss_pred ceEEEEECccc-c-cceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEEC--CCCC-eEEccCCCCCccceEE
Confidence 77775532100 0 12333444555677899999 9999987643222357999997 3343 4555544456678889
Q ss_pred cccchhhh
Q 000080 2375 LKLLNFAL 2382 (2389)
Q Consensus 2375 ~~~~~~~~ 2382 (2389)
+|+|++++
T Consensus 379 SpDG~~L~ 386 (428)
T PRK01029 379 AIDSLHLV 386 (428)
T ss_pred CCCCCEEE
Confidence 99998865
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-05 Score=92.99 Aligned_cols=193 Identities=17% Similarity=0.276 Sum_probs=127.0
Q ss_pred eeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE-ec-CCeEE
Q 000080 44 IDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA-AS-ENCIF 121 (2389)
Q Consensus 44 i~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA-Sy-DntIR 121 (2389)
..++|+ | .|||.++-..+||+. + ..+|.+ |.+.-- | .|.-+.|..| ...|++ .| +..|.
T Consensus 14 c~fSp~--g-~yiAs~~~yrlviRd--~--~tlq~~------qlf~cl-d--ki~yieW~ad---s~~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 14 CSFSPC--G-NYIASLSRYRLVIRD--S--ETLQLH------QLFLCL-D--KIVYIEWKAD---SCHILCVAYKDPKVQ 74 (447)
T ss_pred eeECCC--C-CeeeeeeeeEEEEec--c--chhhHH------HHHHHH-H--Hhhheeeecc---ceeeeeeeeccceEE
Confidence 467888 8 699999999999998 3 122222 333222 2 6889999998 777774 45 67999
Q ss_pred EEeeCCCCCCCCccceeeEEecccceEEEEeecCCCCeEE-EEecc--eEEeeccCCcEEEEEEeeccccc-eEEEEeec
Q 000080 122 VFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIV-AGGME--TVLWKKKNTLWEIAWKFKENYPQ-NLVSATWS 197 (2389)
Q Consensus 122 Vw~~d~~~~kgd~~W~~~~tL~hssTV~sIAWSpdG~rLa-SggdD--V~IW~~~~s~Wecvwt~~~~~~~-~ivsvaWS 197 (2389)
+|.-. ..+|.|+..- ...-+-+++|||||+-|+ +..++ +.+|...+..--.+ .+|. ++--+++.
T Consensus 75 vwsl~------Qpew~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-----~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 75 VWSLV------QPEWYCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-----PHPKTNVKGYAFH 142 (447)
T ss_pred EEEee------cceeEEEecc-CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-----cccccCceeEEEC
Confidence 99876 3469997443 344677899999998777 66667 77999877665544 2333 23355889
Q ss_pred CCCceEee-ec-ccc--cc--------------cCC-------CCCCCceeEEEeeCCCccceeecccCC-CCeeEEEec
Q 000080 198 IEGPSATA-AS-MSQ--LD--------------LLG-------PKEAGKCVFICCSDGKSEYIKLELCHP-QPVSMVQWR 251 (2389)
Q Consensus 198 pdG~fATa-g~-dik--f~--------------~~~-------~~~~~kpV~V~~~dg~~~~~~ve~aH~-qdVn~V~W~ 251 (2389)
|||.|++- ++ |-| ++ ... =+.++....||++ -.++ +++..|- -.|+.|+|+
T Consensus 143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~--~Ley-kv~aYe~~lG~k~v~ws 219 (447)
T KOG4497|consen 143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN--VLEY-KVYAYERGLGLKFVEWS 219 (447)
T ss_pred CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc--hhhh-eeeeeeeccceeEEEec
Confidence 99996554 44 222 11 111 1234455667733 2222 2333444 689999999
Q ss_pred cCCCCCCCCCCccccCceEEeeecCCeEEEEE
Q 000080 252 PSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWC 283 (2389)
Q Consensus 252 Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~ 283 (2389)
|. ...||-+|+|+.+||-.
T Consensus 220 P~-------------~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 220 PC-------------NQFLAVGSYDQMLRVLN 238 (447)
T ss_pred cc-------------cceEEeeccchhhhhhc
Confidence 93 23599999999999844
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.4e-06 Score=102.25 Aligned_cols=132 Identities=20% Similarity=0.341 Sum_probs=97.3
Q ss_pred eEEec-ccceEEEEeecCCCCeEEEEecc--eEEeeccCCcEEEEEEeeccccceEEEEeecCC-Cc--eEeeecccc--
Q 000080 139 NAILV-QGTKVEAIEWTGSGDGIVAGGME--TVLWKKKNTLWEIAWKFKENYPQNLVSATWSIE-GP--SATAASMSQ-- 210 (2389)
Q Consensus 139 ~~tL~-hssTV~sIAWSpdG~rLaSggdD--V~IW~~~~s~Wecvwt~~~~~~~~ivsvaWSpd-G~--fATag~dik-- 210 (2389)
.+.|+ |++-|.+++|+.+|..||||||| +.||+-- ..+..-.+..-|..+|+++.+=|. +. ++||++|..
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 34444 89999999999999999999999 7799965 344444456678899999999995 33 899999755
Q ss_pred -cccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeecCCc
Q 000080 211 -LDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGK 289 (2389)
Q Consensus 211 -f~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d~Gk 289 (2389)
|......+.. ++++-.+-...+.+|+..|+.++=.| -.+|+.-|||.|||||=+|+.|.-.
T Consensus 121 lfdl~~~~~~~------~d~~~~~~~~~~~cht~rVKria~~p------------~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 121 LFDLDSSKEGG------MDHGMEETTRCWSCHTDRVKRIATAP------------NGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred EEecccccccc------cccCccchhhhhhhhhhhhhheecCC------------CCCceEEEecCCcceeeecccCCcc
Confidence 3333111110 11222222345789999999999988 2578899999999999999998655
Q ss_pred c
Q 000080 290 T 290 (2389)
Q Consensus 290 ~ 290 (2389)
+
T Consensus 183 c 183 (758)
T KOG1310|consen 183 C 183 (758)
T ss_pred C
Confidence 5
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.8e-05 Score=94.40 Aligned_cols=133 Identities=15% Similarity=0.390 Sum_probs=99.0
Q ss_pred eeccccccccccccccCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEE
Q 000080 2197 SALGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA 2276 (2389)
Q Consensus 2197 sg~~~d~~~~~~~~~d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~s 2276 (2389)
|+..|..-.+.-+. .+. |-.|...+|||.++.|+..-.-+++..|+++.|...++-.-++.+ ....|.+
T Consensus 183 SVWdWqk~~~~~~v----k~s-ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~------ekk~Vl~ 251 (626)
T KOG2106|consen 183 SVWDWQKKAKLGPV----KTS-NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKR------EKKFVLC 251 (626)
T ss_pred chhhchhhhccCcc----eec-cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccc------cceEEEE
Confidence 44445444444432 333 223588899999987666667889999999988876653323333 1367999
Q ss_pred EEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2277 LQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2277 VaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
|+|.++|+ ..+|..+|+|.+|+..+. +..++...|.+.|.+++... +|++| ||| .|+.|-+||-
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~-----~~~k~~~aH~ggv~~L~~lr-~Gtll-SGg---KDRki~~Wd~ 315 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTN-----RISKQVHAHDGGVFSLCMLR-DGTLL-SGG---KDRKIILWDD 315 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCc-----eEEeEeeecCCceEEEEEec-CccEe-ecC---ccceEEeccc
Confidence 99999997 468999999999999753 44555559999999999998 98877 454 9999999993
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.5e-05 Score=91.05 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=117.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc---eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk---~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL 2297 (2389)
+|.+-||++|+..+|.+-....|.|+.....+ ..+|+. -|...|+.|.++|.+++|.+++.|+.-.+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls----------~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS----------EHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh----------hhCcceeEEeecCCCCceeEccCCCCccc
Confidence 34888999999999999999999999986554 345553 25688999999999999999999999999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC------------CCCCCceEEEEee
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL------------APPTSSRASITCH 2365 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l------------~~tg~~v~sL~GH 2365 (2389)
|....++ .=+|..-+.-|+..+..|.++| .++.+|++ |..+.|.||-+- .+....+.+|.-|
T Consensus 82 w~~~~~~--~WkptlvLlRiNrAAt~V~WsP-~enkFAVg---Sgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 82 WTQPSGG--TWKPTLVLLRINRAATCVKWSP-KENKFAVG---SGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred cccCCCC--eeccceeEEEeccceeeEeecC-cCceEEec---cCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 9995554 2356677778999999999999 88999986 578999999862 2223347889999
Q ss_pred cCcEEEEeecccc
Q 000080 2366 EGLYDLFLPLKLL 2378 (2389)
Q Consensus 2366 ~~~V~svA~~~~~ 2378 (2389)
.++|..-|.+.|+
T Consensus 156 pnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 156 PNNVLLAAGSTDG 168 (361)
T ss_pred CCcceecccccCc
Confidence 9999999999998
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.4e-06 Score=68.31 Aligned_cols=39 Identities=28% Similarity=0.475 Sum_probs=34.8
Q ss_pred CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2251 DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2251 Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
|+++.+++ ||.+.|++|+|+|++++||||+.|++|++||
T Consensus 1 g~~~~~~~----------~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR----------GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE----------SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc----------CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46677774 5779999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=92.99 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=102.3
Q ss_pred eeEEEEEEcCCCC-eEEEEeCCCcEEE---eecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcE
Q 000080 2220 ISTRAFSSHPLRP-FFLVGSSNTHIYL---WEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2389)
Q Consensus 2220 i~VrsVAFsPdG~-~LASGS~DgTIRL---WDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTV 2295 (2389)
+.+.+++|+|.-+ .++.|+++|.|.- ++...+.. ..| ++|..+ .-|.+.|++|.+||-+..+...+.|-||
T Consensus 348 ~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~---~~~~~~-~~h~g~v~~v~~nPF~~k~fls~gDW~v 422 (555)
T KOG1587|consen 348 VGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSY---KGHSTF-ITHIGPVYAVSRNPFYPKNFLSVGDWTV 422 (555)
T ss_pred cceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-ccc---cccccc-cccCcceEeeecCCCccceeeeecccee
Confidence 5778999999766 5888999999977 33322221 222 233222 2467899999999999766666669999
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeec
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~ 2375 (2389)
|||.-... ..|+..+..+...|.+++|||---.++|++ ..||+|-|||++..+-..+.+..-+....+.+..+
T Consensus 423 riWs~~~~----~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s 495 (555)
T KOG1587|consen 423 RIWSEDVI----ASPLLSLDSSPDYVTDVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWS 495 (555)
T ss_pred EeccccCC----CCcchhhhhccceeeeeEEcCcCceEEEEE---cCCCceehhhhhccccCCcccccccccccceeecC
Confidence 99987632 268888888999999999999333466664 58999999999755444455543334444455555
Q ss_pred ccch
Q 000080 2376 KLLN 2379 (2389)
Q Consensus 2376 ~~~~ 2379 (2389)
+.|+
T Consensus 496 ~~g~ 499 (555)
T KOG1587|consen 496 PNGK 499 (555)
T ss_pred CCCc
Confidence 4443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.7e-05 Score=91.12 Aligned_cols=139 Identities=16% Similarity=0.103 Sum_probs=88.8
Q ss_pred EEEEEcCCCCeEE-EEeCC--CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC-C--cEE
Q 000080 2223 RAFSSHPLRPFFL-VGSSN--THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-G--TVC 2296 (2389)
Q Consensus 2223 rsVAFsPdG~~LA-SGS~D--gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D-g--TVk 2296 (2389)
.+++|+|||+.|+ +.+.+ ..|++||+.+++..+ +. . +...+...+|+|||++|+.++.. + .|.
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~---~-------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT---N-------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIY 305 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC---C-------CCCCCCCEEECCCCCEEEEEECCCCCceEE
Confidence 4568999999765 44444 469999998776433 21 1 12335577899999999877653 3 577
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
+||+.++. ...+..+...+..++|+| ||++|+.++.......|.+||+. + ...+.+..+ ......+++|
T Consensus 306 ~~d~~~~~------~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~--~-~~~~~l~~~-~~~~~p~~sp 374 (417)
T TIGR02800 306 MMDADGGE------VRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLD--G-GGERVLTDT-GLDESPSFAP 374 (417)
T ss_pred EEECCCCC------EEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCC--C-CCeEEccCC-CCCCCceECC
Confidence 77877642 233444556677889999 89999886421111278888873 3 334444332 2234567888
Q ss_pred cchhhhc
Q 000080 2377 LLNFALS 2383 (2389)
Q Consensus 2377 ~~~~~~s 2383 (2389)
+|++++.
T Consensus 375 dg~~l~~ 381 (417)
T TIGR02800 375 NGRMILY 381 (417)
T ss_pred CCCEEEE
Confidence 8887654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.1e-05 Score=100.40 Aligned_cols=146 Identities=17% Similarity=0.221 Sum_probs=97.4
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCC-----C--ceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGK-----D--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~t-----G--k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL 2297 (2389)
...+|++.+++|||+|||||+||... + ++..||. .....|.+|.+-+.|+.+|.|+.||.|++
T Consensus 1055 a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys----------~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1055 AVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS----------PEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred eecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe----------ccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 34555669999999999999999752 1 2334442 02378999999999999999999999999
Q ss_pred eeCCCC--CccCccc--ceeeeecCCCeeEEEEecCCCC-EEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEE
Q 000080 2298 WQLEVG--GRSNVRP--MESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLF 2372 (2389)
Q Consensus 2298 WDl~tg--grs~~k~--l~tl~gHs~~V~sVAFSP~DGs-lLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~sv 2372 (2389)
-+++.. .+-.... ...+.....-|..-+|...+++ .|+-+ ..-+-|..||+...+.-..-..+-..|-|+++
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~---T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA---TDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEE---EeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999762 1000000 0111222233445566655666 55543 46778999998533222223344466889999
Q ss_pred eecccchhhhc
Q 000080 2373 LPLKLLNFALS 2383 (2389)
Q Consensus 2373 A~~~~~~~~~s 2383 (2389)
+.+|-++|++.
T Consensus 1202 ~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1202 VIDPWCNWLVI 1212 (1431)
T ss_pred EecCCceEEEE
Confidence 99999999875
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00064 Score=86.17 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=104.8
Q ss_pred CcceeecCCCCCCeEEEEec---CCc-EEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE--
Q 000080 41 TSTIDWLPDFAGYSWVAYGA---SSL-LVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA-- 114 (2389)
Q Consensus 41 ~~ai~wlpD~~G~~~vAYas---g~~-vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA-- 114 (2389)
...+.|+|| | .++||.+ +.. |.+..+. .+.. . ++-...+ .+...+|||| +..|+.
T Consensus 220 ~~~p~wSPD--G-~~La~~s~~~g~~~L~~~dl~---tg~~-~------~lt~~~g---~~~~~~wSPD---G~~La~~~ 280 (448)
T PRK04792 220 LMSPAWSPD--G-RKLAYVSFENRKAEIFVQDIY---TQVR-E------KVTSFPG---INGAPRFSPD---GKKLALVL 280 (448)
T ss_pred ccCceECCC--C-CEEEEEEecCCCcEEEEEECC---CCCe-E------EecCCCC---CcCCeeECCC---CCEEEEEE
Confidence 347899999 7 4888874 332 4444422 2211 1 1111111 2457899998 666774
Q ss_pred ecCCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc---eEEee--ccCCcEEEEEEeecccc
Q 000080 115 ASENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME---TVLWK--KKNTLWEIAWKFKENYP 188 (2389)
Q Consensus 115 SyDntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD---V~IW~--~~~s~Wecvwt~~~~~~ 188 (2389)
+.++...||.-+. ..+. ...++ +...+...+|+|||++|+..++. .+||. ..++.++.+. ..+
T Consensus 281 ~~~g~~~Iy~~dl--~tg~-----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g--- 349 (448)
T PRK04792 281 SKDGQPEIYVVDI--ATKA-----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEG--- 349 (448)
T ss_pred eCCCCeEEEEEEC--CCCC-----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCC---
Confidence 3356666665541 1121 11233 34456778999999999976652 45554 4556666552 111
Q ss_pred ceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccC
Q 000080 189 QNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQR 267 (2389)
Q Consensus 189 ~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~ 267 (2389)
......+|||||. +|.++.... .--++++.-++.. ...+. ....+ ....|+| ||+.
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g---------~~~I~~~dl~~g~-~~~lt-~~~~d-~~ps~sp--------dG~~--- 406 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNG---------KFNIARQDLETGA-MQVLT-STRLD-ESPSVAP--------NGTM--- 406 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCC---------ceEEEEEECCCCC-eEEcc-CCCCC-CCceECC--------CCCE---
Confidence 1223568999999 766654211 0112222211111 11111 11122 2347999 6665
Q ss_pred ceEEeeecCCeEEEEEeecCCcccc
Q 000080 268 HVLLTCCLDGTVRLWCEMDSGKTRK 292 (2389)
Q Consensus 268 nILAScSdDgTVRLW~e~d~Gk~kk 292 (2389)
|+.++..+|.-+||-.+-.|+.++
T Consensus 407 -I~~~~~~~g~~~l~~~~~~G~~~~ 430 (448)
T PRK04792 407 -VIYSTTYQGKQVLAAVSIDGRFKA 430 (448)
T ss_pred -EEEEEecCCceEEEEEECCCCceE
Confidence 456666677767776655565543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.9e-05 Score=98.40 Aligned_cols=132 Identities=17% Similarity=0.300 Sum_probs=97.2
Q ss_pred ccccccccccccc---cCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEee-cC-CC-ceeeEecccCCCCCCCCCCCC
Q 000080 2199 LGWETQDDFEDYV---DPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWE-FG-KD-KATATYGVLPAANVPPPYALA 2272 (2389)
Q Consensus 2199 ~~~d~~~~~~~~~---d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWD-l~-tG-k~l~Tl~vl~gh~~p~~GH~~ 2272 (2389)
+.|......+-+. ....+..+ +..+++||+++++|+|-.||.|.+|. ++ .+ +...+. + .=|.+
T Consensus 184 ~~~~v~~~~~~~~~~~~~~~Htf~--~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~--l-------HWH~~ 252 (792)
T KOG1963|consen 184 HIYFVPKHTKHTSSRDITVHHTFN--ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTL--L-------HWHHD 252 (792)
T ss_pred EEEEecccceeeccchhhhhhccc--ceeEEeccccceEEEeccCCcEEEEeccccccccccceE--E-------Eeccc
Confidence 4666666444332 22233333 48899999999999999999999997 43 12 222222 1 23668
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2273 SISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2273 ~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
.|.+++||+||..|.||+..|.+-+|+++|+++ .+.. --.+.|..+.+|| ||.+.+.. -+|+.|.|=..
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k----qfLP--RLgs~I~~i~vS~-ds~~~sl~---~~DNqI~li~~ 321 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK----QFLP--RLGSPILHIVVSP-DSDLYSLV---LEDNQIHLIKA 321 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCCc----cccc--ccCCeeEEEEEcC-CCCeEEEE---ecCceEEEEec
Confidence 999999999999999999999999999999853 2322 2357899999999 88888764 47999888775
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.6e-05 Score=88.34 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=77.3
Q ss_pred eEEE-EeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc-EEEeeCCCCCccCccc
Q 000080 2233 FFLV-GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT-VCTWQLEVGGRSNVRP 2310 (2389)
Q Consensus 2233 ~LAS-GS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT-VkLWDl~tggrs~~k~ 2310 (2389)
+||- |-.=|+|+|=|+..-+.-.+.. ++ .|.+.|.+|+.+-+|.++||||..|| |||||.++|+ .++.
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~-I~-------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~--~l~E 219 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSI-IN-------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT--LLQE 219 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceE-EE-------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc--Eeee
Confidence 4443 4455778888876444311111 12 46799999999999999999999999 7999999985 2233
Q ss_pred ceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2311 l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
++.-..| ..|++++||| ++++||.+ |+-+||.|..+.
T Consensus 220 ~RRG~d~-A~iy~iaFSp-~~s~Lavs---SdKgTlHiF~l~ 256 (346)
T KOG2111|consen 220 LRRGVDR-ADIYCIAFSP-NSSWLAVS---SDKGTLHIFSLR 256 (346)
T ss_pred eecCCch-heEEEEEeCC-CccEEEEE---cCCCeEEEEEee
Confidence 3332223 5689999999 99999986 799999999974
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.4e-05 Score=88.83 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=65.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCCc-EEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTH-IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgT-IRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
.|..|+.+-+|..+||+|..|| |||||..+|+.++.++ .|- ..+.|++++||||+.+||.+|+-|||.+..
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R--RG~------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR--RGV------DRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee--cCC------chheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 3588999999999999999988 5999999999998886 232 226799999999999999999999999999
Q ss_pred CCCC
Q 000080 2300 LEVG 2303 (2389)
Q Consensus 2300 l~tg 2303 (2389)
++..
T Consensus 255 l~~~ 258 (346)
T KOG2111|consen 255 LRDT 258 (346)
T ss_pred eecC
Confidence 9763
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00024 Score=89.98 Aligned_cols=130 Identities=11% Similarity=0.066 Sum_probs=100.9
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
..|.++..+.+...|-|++.|+.+-.|+...++.++.+.. -...|.+++++|||+.|++|| ++|++||
T Consensus 103 ~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~----------~~~~~~sl~is~D~~~l~~as--~~ik~~~ 170 (541)
T KOG4547|consen 103 GNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE----------QKPLVSSLCISPDGKILLTAS--RQIKVLD 170 (541)
T ss_pred CcceeeecccccCceEecCCceeEEEEecccceeeeeecc----------CCCccceEEEcCCCCEEEecc--ceEEEEE
Confidence 3568889999999999999999999999998888888763 135699999999999999998 5799999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCC-----CCEEEEeecCCCCCeEEEeeCCCCCC-Cc-eEEEEeecCcE
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSS-----GSVIAAAGHSSNGINVVVWDTLAPPT-SS-RASITCHEGLY 2369 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~D-----GslLASAG~sS~D~TVrLWD~l~~tg-~~-v~sL~GH~~~V 2369 (2389)
++++ +.+.++.||.+.|++++|.. + |.++.++. ..++-|.+|-+..... +. .++|..-.-+|
T Consensus 171 ~~~k-----evv~~ftgh~s~v~t~~f~~-~~~g~~G~~vLssa--~~~r~i~~w~v~~~~kkks~~~sl~~~dipv 239 (541)
T KOG4547|consen 171 IETK-----EVVITFTGHGSPVRTLSFTT-LIDGIIGKYVLSSA--AAERGITVWVVEKEDKKKSLSCSLTVPDIPV 239 (541)
T ss_pred ccCc-----eEEEEecCCCcceEEEEEEE-eccccccceeeecc--ccccceeEEEEEcccccchhheeeccCCCCe
Confidence 9996 57899999999999999998 5 55555532 3566688887743222 22 45665443333
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=87.46 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=100.0
Q ss_pred eeEEEEEEcCC--CCeEEEEeCCCcEEEeecCCCc-eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 000080 2220 ISTRAFSSHPL--RPFFLVGSSNTHIYLWEFGKDK-ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2389)
Q Consensus 2220 i~VrsVAFsPd--G~~LASGS~DgTIRLWDl~tGk-~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVk 2296 (2389)
|.+.++.|-|. ...||+++.=+.||+||.+.++ .+.+|.. -...|+++...|+|+++.+|..-|.+.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~----------~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF----------LENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc----------ccCcceeeeecCCCcEEEEecccchhh
Confidence 34567899998 7789999999999999999886 5666642 246799999999999999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA 2360 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~ 2360 (2389)
..|++++. .....+.|.++.+++|.-+| ++.+||++| -|+.|||.|+ .+.+.++
T Consensus 273 ~FD~r~~k----l~g~~~kg~tGsirsih~hp-~~~~las~G---LDRyvRIhD~--ktrkll~ 326 (412)
T KOG3881|consen 273 KFDLRGGK----LLGCGLKGITGSIRSIHCHP-THPVLASCG---LDRYVRIHDI--KTRKLLH 326 (412)
T ss_pred eecccCce----eeccccCCccCCcceEEEcC-CCceEEeec---cceeEEEeec--ccchhhh
Confidence 99999862 23345788899999999999 889999986 8999999997 3444443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00014 Score=91.44 Aligned_cols=146 Identities=15% Similarity=0.209 Sum_probs=105.0
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCC--CCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA--NVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh--~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL 2297 (2389)
..++.|..+|-..+|++|+.||.|..||.++...+.++.. +-+ ..|-......|+++.|+-||=.+|.|..+|.|.|
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~-~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i 254 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA-ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI 254 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeec-ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE
Confidence 3458889999999999999999999999988877766641 111 0111112346999999999999999999999999
Q ss_pred eeCCCCCccCccccee-eeecCCCeeEEEEecC-CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeec
Q 000080 2298 WQLEVGGRSNVRPMES-CLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~t-l~gHs~~V~sVAFSP~-DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~ 2375 (2389)
+|+++. +|+.. -.+-.-+|..+.|.+. ++..|+|. +-+.+||||- .+|+...+++ -+..++-+++-
T Consensus 255 yDLRa~-----~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~----Dk~~~kiWd~--~~Gk~~asiE-pt~~lND~C~~ 322 (703)
T KOG2321|consen 255 YDLRAS-----KPLLVKDHGYELPIKKLDWQDTDQQNKVVSM----DKRILKIWDE--CTGKPMASIE-PTSDLNDFCFV 322 (703)
T ss_pred EEcccC-----CceeecccCCccceeeecccccCCCceEEec----chHHhhhccc--ccCCceeecc-ccCCcCceeee
Confidence 999985 34322 2233456778888874 24577774 7789999996 4666666665 33346666666
Q ss_pred ccc
Q 000080 2376 KLL 2378 (2389)
Q Consensus 2376 ~~~ 2378 (2389)
|.+
T Consensus 323 p~s 325 (703)
T KOG2321|consen 323 PGS 325 (703)
T ss_pred cCC
Confidence 554
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00029 Score=93.07 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=99.6
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEeCCCcEEEeeCCCC
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD-HYGHRFASAALDGTVCTWQLEVG 2303 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFS-PDG~~LASgS~DgTVkLWDl~tg 2303 (2389)
++|......|+++|+=..|||||..+.+.++.. |.|...-|+++.-+ +.|+.+|.|-.||.||++|.+..
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di---------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI---------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeec---------ccCCCccceeecccccCCceEEEeecCCceEEeecccC
Confidence 477777777777778899999999876666554 13455678888665 44799999999999999999986
Q ss_pred CccCcccceeeeecCCC--eeEEEEecCCCCE-EEEeecCCCCCeEEEeeCCCCCCCceEEEEeec--C-cEEEEeeccc
Q 000080 2304 GRSNVRPMESCLCFSSH--AMDVSYITSSGSV-IAAAGHSSNGINVVVWDTLAPPTSSRASITCHE--G-LYDLFLPLKL 2377 (2389)
Q Consensus 2304 grs~~k~l~tl~gHs~~--V~sVAFSP~DGsl-LASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~--~-~V~svA~~~~ 2377 (2389)
.+ ...+.....|+.. |..+.+-+ .|-. |+|| |.||.|++||+..+.....-++..|. | ..+++..|+.
T Consensus 1242 ~~--ds~v~~~R~h~~~~~Iv~~slq~-~G~~elvSg---s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1242 PP--DSLVCVYREHNDVEPIVHLSLQR-QGLGELVSG---SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred Cc--cccceeecccCCcccceeEEeec-CCCcceeee---ccCCeEEEEecccCcccccceeeeccccCccceeeeeccC
Confidence 31 1356677889988 99999998 4433 7775 69999999998643333333334343 3 2666666665
Q ss_pred ch
Q 000080 2378 LN 2379 (2389)
Q Consensus 2378 ~~ 2379 (2389)
-+
T Consensus 1316 ap 1317 (1387)
T KOG1517|consen 1316 AP 1317 (1387)
T ss_pred CC
Confidence 43
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00029 Score=92.17 Aligned_cols=142 Identities=11% Similarity=0.117 Sum_probs=103.2
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe-eCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW-QLE 2301 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW-Dl~ 2301 (2389)
+.|.+++.|.+.+-. .+..+.+|++.++.. .+.. ..-+ --|+-.+++++|||.|+.+|+|..||.|.+| |..
T Consensus 164 ~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~-~~~~-~~~~----~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIV-HMCKIHIYFVPKHTK-HTSS-RDIT----VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred ccEEEcCCceEEEEE-EeeeEEEEEecccce-eecc-chhh----hhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence 456899998876654 566799999987662 2211 0111 1255558999999999999999999999999 444
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
..+.+ .....+.-|...|.+++|++ ||.+|.||| ..+...+|.+ .+++ .+=|.-=.+.|..+..|||++-
T Consensus 237 ~~~~~--~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG---~E~VLv~Wq~--~T~~-kqfLPRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 237 SSDDS--ETCTLLHWHHDEVNSLSFSS-DGAYLLSGG---REGVLVLWQL--ETGK-KQFLPRLGSPILHIVVSPDSDL 306 (792)
T ss_pred ccccc--ccceEEEecccccceeEEec-CCceEeecc---cceEEEEEee--cCCC-cccccccCCeeEEEEEcCCCCe
Confidence 11111 23456778999999999999 999999986 7899999998 4444 3444445566888888888863
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00037 Score=84.45 Aligned_cols=180 Identities=9% Similarity=-0.028 Sum_probs=124.1
Q ss_pred ccccceeeccccccccccccc--------cCCCCcCc---eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecc
Q 000080 2191 YAGIGASALGWETQDDFEDYV--------DPPATVEN---ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV 2259 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~--------d~~atv~n---i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~v 2259 (2389)
-+.-+||| |.|-..++|... +|+.-.+. --|.+++|....+++.||..|++|.+-|+++.+.+..+.
T Consensus 67 N~~~L~SG-GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~- 144 (609)
T KOG4227|consen 67 NDRFLASG-GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN- 144 (609)
T ss_pred CCeEEeec-CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeec-
Confidence 35567777 777777777542 22221110 124899999999999999999999999999988777663
Q ss_pred cCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeec
Q 000080 2260 LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH 2339 (2389)
Q Consensus 2260 l~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~ 2339 (2389)
|+ ...+.|+.+.-+|-.+.||+.+.|+.|.+||++.. .++-...-+..-.+.-+++-|+|-.-.+||++
T Consensus 145 ---~~----~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~--~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~-- 213 (609)
T KOG4227|consen 145 ---EN----NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR--QNPISLVLPANSGKNFYTAEFHPETPALILVN-- 213 (609)
T ss_pred ---cc----CcccceeecccCCCCceEEEEecCceEEEEeccCC--CCCCceeeecCCCccceeeeecCCCceeEEec--
Confidence 32 12358999999999999999999999999999864 12222233334445667899999777889887
Q ss_pred CCCCCeEEEeeCCCCCCCce-----EEEEeecCcEEEEeecccchhhhcc
Q 000080 2340 SSNGINVVVWDTLAPPTSSR-----ASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2340 sS~D~TVrLWD~l~~tg~~v-----~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
++-+-+-|||...+..... ..|+.....--++-+++.|+-.|+-
T Consensus 214 -~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 214 -SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred -cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 4566689999865443222 1232211111366788888877764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0057 Score=84.07 Aligned_cols=238 Identities=17% Similarity=0.310 Sum_probs=140.7
Q ss_pred CCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCccc-ccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE-
Q 000080 37 PTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQ-EEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA- 114 (2389)
Q Consensus 37 p~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~-~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA- 114 (2389)
+....-.+.+++|-..+ .+|+++|.-+++.-=|+|... .|.+ |.-| .-|.+.+|||| +|++|
T Consensus 74 ~~~~ivs~~yl~d~~~l-~~~~~~Gdi~~~~~~~~~~~~~~E~V----------G~vd-~GI~a~~WSPD----~Ella~ 137 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESL-CIALASGDIILVREDPDPDEDEIEIV----------GSVD-SGILAASWSPD----EELLAL 137 (928)
T ss_pred CCCcEEEEEeccCCCcE-EEEECCceEEEEEccCCCCCceeEEE----------EEEc-CcEEEEEECCC----cCEEEE
Confidence 33444555666775553 788888888888652222222 1222 3333 36999999998 67664
Q ss_pred -ecCCeEEEEeeC--C-------CCCCC-----CccceeeEEec--------------------------ccceEEEEee
Q 000080 115 -ASENCIFVFAHD--S-------ASSKG-----SFCWSQNAILV--------------------------QGTKVEAIEW 153 (2389)
Q Consensus 115 -SyDntIRVw~~d--~-------~~~kg-----d~~W~~~~tL~--------------------------hssTV~sIAW 153 (2389)
..++++-+-..+ + ..+-+ +..|..+.|=. ....--.|+|
T Consensus 138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW 217 (928)
T PF04762_consen 138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW 217 (928)
T ss_pred EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE
Confidence 566677665321 0 00111 12466653331 1112346999
Q ss_pred cCCCCeEEEEec----c----eEEeeccCCcEEEEEEeeccccceEE--EEeecCCCc-eEeeecccccccCCCCCCCce
Q 000080 154 TGSGDGIVAGGM----E----TVLWKKKNTLWEIAWKFKENYPQNLV--SATWSIEGP-SATAASMSQLDLLGPKEAGKC 222 (2389)
Q Consensus 154 SpdG~rLaSggd----D----V~IW~~~~s~Wecvwt~~~~~~~~iv--svaWSpdG~-fATag~dikf~~~~~~~~~kp 222 (2389)
-+||.+.|..+- + ++||++. + +.-.++ + +.+-. .++|.|.|. +|++-+.. ...-
T Consensus 218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G--~L~stS--E-~v~gLe~~l~WrPsG~lIA~~q~~~---------~~~~ 282 (928)
T PF04762_consen 218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-G--ELQSTS--E-PVDGLEGALSWRPSGNLIASSQRLP---------DRHD 282 (928)
T ss_pred CCCCcEEEEEEEEcCCCceeEEEEECCC-c--eEEecc--c-cCCCccCCccCCCCCCEEEEEEEcC---------CCcE
Confidence 999999995553 1 7799865 2 333222 2 22222 669999999 88887611 0122
Q ss_pred eEEEeeCCCccceee--cccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeecCCcccccccccCCC
Q 000080 223 VFICCSDGKSEYIKL--ELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDH 300 (2389)
Q Consensus 223 V~V~~~dg~~~~~~v--e~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d~Gk~kk~~~~~~d~ 300 (2389)
|..+|.+|-.--++. .......|..++|++ ..+|||-...|. |+||..-
T Consensus 283 VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~-------------ds~iLAv~~~~~-vqLWt~~--------------- 333 (928)
T PF04762_consen 283 VVFFERNGLRHGEFTLRFDPEEEKVIELAWNS-------------DSEILAVWLEDR-VQLWTRS--------------- 333 (928)
T ss_pred EEEEecCCcEeeeEecCCCCCCceeeEEEECC-------------CCCEEEEEecCC-ceEEEee---------------
Confidence 444544443322232 234567899999998 356799987666 9999922
Q ss_pred CccceeEEEEEEEeecccccCCCCCCeEEEeeccccceeecc
Q 000080 301 KTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETG 342 (2389)
Q Consensus 301 ~~~~~sF~vaA~I~~~~~~~~~l~~~~~v~W~~~~~~vf~~~ 342 (2389)
.-|+++=-.|..+... +. ..++|=.++...+-..
T Consensus 334 ---NYHWYLKqei~~~~~~----~~-~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 334 ---NYHWYLKQEIRFSSSE----SV-NFVKWDPEKPLRLHVL 367 (928)
T ss_pred ---CCEEEEEEEEEccCCC----CC-CceEECCCCCCEEEEE
Confidence 2788888888855511 11 1388888876654444
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.7e-05 Score=92.62 Aligned_cols=109 Identities=20% Similarity=0.337 Sum_probs=83.3
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.+..+.-+|-...+-.|..+|||.||.....+.+..+. . |.+.|++||+.|+|+++||++.|+.|++||+
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL---c-------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---C-------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH---h-------cCCCcceEEECCCCcEEeecccccceeEeee
Confidence 34667888988899999999999999987777654432 3 5688999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
+.-. .+.++.- ...+..++||. - .+||.+ .+..|.||.=
T Consensus 323 R~~~-----ql~t~~t-p~~a~~ls~Sq-k-glLA~~----~G~~v~iw~d 361 (545)
T KOG1272|consen 323 RNFY-----QLHTYRT-PHPASNLSLSQ-K-GLLALS----YGDHVQIWKD 361 (545)
T ss_pred cccc-----ccceeec-CCCcccccccc-c-cceeee----cCCeeeeehh
Confidence 9752 2222211 24567789996 4 456642 5678999973
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00021 Score=90.13 Aligned_cols=130 Identities=22% Similarity=0.384 Sum_probs=93.0
Q ss_pred CCeeEEEEcCCCCCCCcEEEecC---CeEEEEeeCCCCCCCCccceeeEEe-cccceEEEEeecCCCCeEEEEecc----
Q 000080 95 LPVTSISWSPETPSIGQLAAASE---NCIFVFAHDSASSKGSFCWSQNAIL-VQGTKVEAIEWTGSGDGIVAGGME---- 166 (2389)
Q Consensus 95 ~dVk~VaWSPd~~~~GeIaASyD---ntIRVw~~d~~~~kgd~~W~~~~tL-~hssTV~sIAWSpdG~rLaSggdD---- 166 (2389)
.+|-+|.|+|. +.|.++.|+ -+|-||... ++ -.+ ..+++=.++-|||.|+.|+-+|++
T Consensus 271 GPVhdv~W~~s---~~EF~VvyGfMPAkvtifnlr-----~~------~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 271 GPVHDVTWSPS---GREFAVVYGFMPAKVTIFNLR-----GK------PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred CCceEEEECCC---CCEEEEEEecccceEEEEcCC-----CC------EeEeCCCCCccceEECCCCCEEEEeecCCCCC
Confidence 58999999997 778888876 788888765 11 111 246677889999999999999996
Q ss_pred -eEEeeccCCcEEEEEEeeccccceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCC
Q 000080 167 -TVLWKKKNTLWEIAWKFKENYPQNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQP 244 (2389)
Q Consensus 167 -V~IW~~~~s~Wecvwt~~~~~~~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qd 244 (2389)
+.||+..+ .+++.+.... .-+++ .|||||. |.||....|+++. +.+-||-++|..-+.+. -++.
T Consensus 337 ~mEvwDv~n--~K~i~~~~a~-~tt~~--eW~PdGe~flTATTaPRlrvd------Ng~KiwhytG~~l~~~~---f~sE 402 (566)
T KOG2315|consen 337 DMEVWDVPN--RKLIAKFKAA-NTTVF--EWSPDGEYFLTATTAPRLRVD------NGIKIWHYTGSLLHEKM---FKSE 402 (566)
T ss_pred ceEEEeccc--hhhccccccC-CceEE--EEcCCCcEEEEEeccccEEec------CCeEEEEecCceeehhh---hhHh
Confidence 88999776 7777654432 23444 8999999 8888776565555 45667777766522221 1225
Q ss_pred eeEEEecc
Q 000080 245 VSMVQWRP 252 (2389)
Q Consensus 245 Vn~V~W~P 252 (2389)
-..|.|+|
T Consensus 403 L~qv~W~P 410 (566)
T KOG2315|consen 403 LLQVEWRP 410 (566)
T ss_pred Hhheeeee
Confidence 66799999
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00073 Score=84.02 Aligned_cols=129 Identities=17% Similarity=0.183 Sum_probs=85.8
Q ss_pred EEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCccccee
Q 000080 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMES 2313 (2389)
Q Consensus 2234 LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~t 2313 (2389)
+++-..+++|.+.|..+.+.+.++.. |+ +.-..++|+|||+++.+++.||+|.++|+.++ +.+.+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~---------~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-----~~v~~ 73 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPT---------GG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATG-----KVVAT 73 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE----------ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSS-----SEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcC---------CC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcc-----cEEEE
Confidence 45677899999999999998888741 11 22245789999999999999999999999986 34555
Q ss_pred eeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee-------cCcEEEEeecccch-hhhc
Q 000080 2314 CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-------EGLYDLFLPLKLLN-FALS 2383 (2389)
Q Consensus 2314 l~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH-------~~~V~svA~~~~~~-~~~s 2383 (2389)
... .....++++|+ ||++++++. -.+++|.|+|+ .+.+.++.+... +.++..+-.++..+ |+++
T Consensus 74 i~~-G~~~~~i~~s~-DG~~~~v~n--~~~~~v~v~D~--~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 74 IKV-GGNPRGIAVSP-DGKYVYVAN--YEPGTVSVIDA--ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp EE--SSEEEEEEE---TTTEEEEEE--EETTEEEEEET--TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred Eec-CCCcceEEEcC-CCCEEEEEe--cCCCceeEecc--ccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 443 34567899999 999999864 47899999997 455667766432 23556665566555 5544
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00013 Score=61.44 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=34.7
Q ss_pred ccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEee
Q 000080 2309 RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2309 k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD 2350 (2389)
+++.++.+|+..|++++|+| ++++|||+ +.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~-~~~~~~s~---~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP-DGNFLASG---SSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET-TSSEEEEE---ETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec-ccccceee---CCCCEEEEEC
Confidence 46788999999999999999 89999997 4999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0022 Score=79.84 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=84.7
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CCCcEEEeeCCC
Q 000080 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLEV 2302 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~DgTVkLWDl~t 2302 (2389)
.+.|+|||+++..++.|+.|.++|+.+++.+++.++ | ..-+.+++||||++++++. .+++|.++|.++
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G---------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--G---------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---S---------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--C---------CCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 368999999999999999999999999999988862 2 3468999999999888765 789999999998
Q ss_pred CCccCcccceeeee-------cCCCeeEEEEecCCCC-EEEEeecCCCCCeEEEeeCCCCCCCce--EEEEeecCcEEEE
Q 000080 2303 GGRSNVRPMESCLC-------FSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSR--ASITCHEGLYDLF 2372 (2389)
Q Consensus 2303 ggrs~~k~l~tl~g-------Hs~~V~sVAFSP~DGs-lLASAG~sS~D~TVrLWD~l~~tg~~v--~sL~GH~~~V~sv 2372 (2389)
. +++++... -+..+..|..+| .+. ++++- -+-+.|.+=|+. ..+.+ ..+. -...-.-.
T Consensus 110 l-----e~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~l---kd~~~I~vVdy~--d~~~~~~~~i~-~g~~~~D~ 177 (369)
T PF02239_consen 110 L-----EPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNL---KDTGEIWVVDYS--DPKNLKVTTIK-VGRFPHDG 177 (369)
T ss_dssp -------EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEE---TTTTEEEEEETT--TSSCEEEEEEE---TTEEEE
T ss_pred c-----cceeecccccccccccCCCceeEEecC-CCCEEEEEE---ccCCeEEEEEec--cccccceeeec-cccccccc
Confidence 5 34444332 234677888888 555 55543 123444444653 22222 3332 22333456
Q ss_pred eecccchhhh
Q 000080 2373 LPLKLLNFAL 2382 (2389)
Q Consensus 2373 A~~~~~~~~~ 2382 (2389)
.+.|+|++.+
T Consensus 178 ~~dpdgry~~ 187 (369)
T PF02239_consen 178 GFDPDGRYFL 187 (369)
T ss_dssp EE-TTSSEEE
T ss_pred ccCcccceee
Confidence 7788887654
|
... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.001 Score=83.09 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=80.1
Q ss_pred cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC---CcEEEeeCCCCCccCcccceeeeecC
Q 000080 2242 HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLCFS 2318 (2389)
Q Consensus 2242 TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D---gTVkLWDl~tggrs~~k~l~tl~gHs 2318 (2389)
.|.++|.. |...+.+. .+...+.+.+|||||++||..+.+ ..|.+||+.++.. +.+.. ..
T Consensus 180 ~l~~~d~~-g~~~~~l~----------~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---~~l~~---~~ 242 (430)
T PRK00178 180 TLQRSDYD-GARAVTLL----------QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---EQITN---FE 242 (430)
T ss_pred EEEEECCC-CCCceEEe----------cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---EEccC---CC
Confidence 58888875 44333332 123668999999999999987754 3688999988631 23322 33
Q ss_pred CCeeEEEEecCCCCEEEEeecCCCCC--eEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2319 SHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2319 ~~V~sVAFSP~DGslLASAG~sS~D~--TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
+.+...+|+| ||+.||.+. +.++ .|.+||+ .+ +.++.+..+.......+++|+|++++
T Consensus 243 g~~~~~~~Sp-DG~~la~~~--~~~g~~~Iy~~d~--~~-~~~~~lt~~~~~~~~~~~spDg~~i~ 302 (430)
T PRK00178 243 GLNGAPAWSP-DGSKLAFVL--SKDGNPEIYVMDL--AS-RQLSRVTNHPAIDTEPFWGKDGRTLY 302 (430)
T ss_pred CCcCCeEECC-CCCEEEEEE--ccCCCceEEEEEC--CC-CCeEEcccCCCCcCCeEECCCCCEEE
Confidence 3455689999 999888532 2333 5777787 23 34566777777777888999998764
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0043 Score=76.06 Aligned_cols=127 Identities=12% Similarity=0.200 Sum_probs=85.7
Q ss_pred EEEEEEcCCCCeE-EEEeCCCcEEEeecC--CCce--eeEecccCCCCCCCCCCCCCEEEEEECCCCCE-EEEEeCCCcE
Q 000080 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFG--KDKA--TATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDGTV 2295 (2389)
Q Consensus 2222 VrsVAFsPdG~~L-ASGS~DgTIRLWDl~--tGk~--l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~-LASgS~DgTV 2295 (2389)
=|.++|||||+++ +..-.+++|.++++. +|+. +++...++.. ..+ ......|++||||++ ++|...+++|
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~-~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG---FTG-ENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT---SCS-SSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc---ccc-cCCceeEEEecCCCEEEEEeccCCEE
Confidence 3888999999965 556688999999998 5543 3333222221 011 136899999999986 5556688999
Q ss_pred EEeeCCC-CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCC
Q 000080 2296 CTWQLEV-GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS 2357 (2389)
Q Consensus 2296 kLWDl~t-ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~ 2357 (2389)
.++++.. .+ .++.+.........-+.++|+| ||++|+.+. -.+++|.++++...+|.
T Consensus 270 ~vf~~d~~~g--~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~--~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 270 SVFDLDPATG--TLTLVQTVPTGGKFPRHFAFSP-DGRYLYVAN--QDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp EEEEECTTTT--TEEEEEEEEESSSSEEEEEE-T-TSSEEEEEE--TTTTEEEEEEEETTTTE
T ss_pred EEEEEecCCC--ceEEEEEEeCCCCCccEEEEeC-CCCEEEEEe--cCCCeEEEEEEeCCCCc
Confidence 9999942 22 2345555554455688999999 999999875 47788999987534444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00034 Score=90.63 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=88.4
Q ss_pred ceeEEEEEEcCCCCeEEEEeCCCcEEEeecC-CCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEE
Q 000080 2219 NISTRAFSSHPLRPFFLVGSSNTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVC 2296 (2389)
Q Consensus 2219 ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~-tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVk 2296 (2389)
..+|++|.++|=++-+...+.|.+||||.-. .-..+..+. . +.+.|++|++||-- ..||++..||.+-
T Consensus 398 ~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~-------~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---S-------SPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred CcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---h-------ccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 3578999999988744444449999999975 334443332 1 34779999999996 7999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
+||+... ...|+.+..-+....+.+.+++ +|+.||.| ...|+|.+|++
T Consensus 468 iWDLl~~---~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavG---d~~G~~~~~~l 515 (555)
T KOG1587|consen 468 IWDLLQD---DEEPVLSQKVCSPALTRVRWSP-NGKLLAVG---DANGTTHILKL 515 (555)
T ss_pred hhhhhcc---ccCCcccccccccccceeecCC-CCcEEEEe---cCCCcEEEEEc
Confidence 9999864 3467777655555555666776 89999986 48899999998
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00039 Score=89.19 Aligned_cols=194 Identities=16% Similarity=0.201 Sum_probs=120.0
Q ss_pred CcceeecCCCCCCeEEEEecCCcEEEEeCCCCccccccc--ccccceeeeeccCCC-CCeeEEEEcCCCCCCCc----EE
Q 000080 41 TSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEAL--IGPIFRQVFALSDNS-LPVTSISWSPETPSIGQ----LA 113 (2389)
Q Consensus 41 ~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~--~~p~~~Qviegh~d~-~dVk~VaWSPd~~~~Ge----Ia 113 (2389)
.+|.+-.|. | .=||-|+.-++.|.+|++|...+..+ +-|.+.+-.+-+-|. -|.|.|.|||+ .- +|
T Consensus 27 ~~a~si~p~--g-rdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q----kaiiwnlA 99 (1081)
T KOG0309|consen 27 FNAVSINPS--G-RDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ----KAIIWNLA 99 (1081)
T ss_pred ccceeeccc--c-chhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc----hhhhhhhh
Confidence 456666676 5 35788999999999999999887653 333333322222222 34555555553 22 22
Q ss_pred EecCCeEEEEeeCCCCCCCCccceeeEEecccceEEEEeecCCCC-eEEEEecc--eEEeeccCCcEE-EEEEeeccccc
Q 000080 114 AASENCIFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGD-GIVAGGME--TVLWKKKNTLWE-IAWKFKENYPQ 189 (2389)
Q Consensus 114 ASyDntIRVw~~d~~~~kgd~~W~~~~tL~hssTV~sIAWSpdG~-rLaSggdD--V~IW~~~~s~We-cvwt~~~~~~~ 189 (2389)
+|+++.|-++-+- |++.|-++-|+|+-. -|++|+-| |..|+..+...- .+|.....+..
T Consensus 100 ~ss~~aIef~lhg-----------------hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~as 162 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHG-----------------HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAAS 162 (1081)
T ss_pred cCCccceEEEEec-----------------CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCc
Confidence 3445555444432 788999999999875 67799988 899996543321 11111111111
Q ss_pred eEEEEeecC-CCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccC
Q 000080 190 NLVSATWSI-EGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQR 267 (2389)
Q Consensus 190 ~ivsvaWSp-dG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~ 267 (2389)
.|.|+- ++. +|+.-+ +-++||.......-.+....|...||++..+- ...
T Consensus 163 ---qVkwnyk~p~vlasshg-------------~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr------------~~~ 214 (1081)
T KOG0309|consen 163 ---QVKWNYKDPNVLASSHG-------------NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR------------FKY 214 (1081)
T ss_pred ---eeeecccCcchhhhccC-------------CceEEEeccCCCcceEEecccceeeehHHHhh------------hhh
Confidence 347774 455 775533 22446643323333445556999999999986 234
Q ss_pred ceEEeeecCCeEEEEEeec
Q 000080 268 HVLLTCCLDGTVRLWCEMD 286 (2389)
Q Consensus 268 nILAScSdDgTVRLW~e~d 286 (2389)
..++||+-|+|||.|++.-
T Consensus 215 s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred hhhcccCCCCceeeecccc
Confidence 5699999999999999874
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0009 Score=81.93 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=113.8
Q ss_pred EEEEEEcCCCC-eEEEEeCC--CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEE
Q 000080 2222 TRAFSSHPLRP-FFLVGSSN--THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVC 2296 (2389)
Q Consensus 2222 VrsVAFsPdG~-~LASGS~D--gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVk 2296 (2389)
+..+--+|.-+ ++|+|+-. ..+++||+.+++.+-+...+|-.+ ...----|++++.|-|. -..||++..-+.||
T Consensus 151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~-L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR-LGLRVPVWITDIRFLEGSPNYKFATITRYHQVR 229 (412)
T ss_pred eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc-ccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence 45566677666 45669988 889999998875543332222111 00001157889999988 89999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEE-EEeecCcEEEEeec
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~s-L~GH~~~V~svA~~ 2375 (2389)
++|.+.+ | +|+.++.--+..+.+++.-| +|+.|.+| ..-+.+...|+ ..++...+ +.|-++.+++|--+
T Consensus 230 ~YDt~~q-R---RPV~~fd~~E~~is~~~l~p-~gn~Iy~g---n~~g~l~~FD~--r~~kl~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 230 LYDTRHQ-R---RPVAQFDFLENPISSTGLTP-SGNFIYTG---NTKGQLAKFDL--RGGKLLGCGLKGITGSIRSIHCH 299 (412)
T ss_pred EecCccc-C---cceeEeccccCcceeeeecC-CCcEEEEe---cccchhheecc--cCceeeccccCCccCCcceEEEc
Confidence 9999987 4 68888777789999999999 99999986 35678999998 35555555 88889999999888
Q ss_pred ccchhhhc
Q 000080 2376 KLLNFALS 2383 (2389)
Q Consensus 2376 ~~~~~~~s 2383 (2389)
|.+.++.|
T Consensus 300 p~~~~las 307 (412)
T KOG3881|consen 300 PTHPVLAS 307 (412)
T ss_pred CCCceEEe
Confidence 88877665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0052 Score=78.15 Aligned_cols=225 Identities=18% Similarity=0.179 Sum_probs=142.2
Q ss_pred CCCCCCCCCCcccccCCccCCCc---cccCCCCcccccCCcccccccccCCCccccCccccccccccccceeeccccccc
Q 000080 2129 DWPQNGWAGSESTPVPTFVSPGV---GLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQD 2205 (2389)
Q Consensus 2129 ~~~~~~~~~~~s~p~~~~~s~~~---g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Asg~~~d~~~ 2205 (2389)
+| .--|.-+||-- ---|+-.| -+++.++-.-.|....|++..+...+..-. .|+=+||..|+-|++--|.-.+
T Consensus 128 ~W-~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~--vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 128 GW-VPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPF--VAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred Cc-ccccccchhhh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCce--EEEEccCCCCCCcEEEEecccc
Confidence 35 44566677622 11122222 234566666666666666666655433332 3667899999988884443331
Q ss_pred cccccccCCCCc--CceeEEEEEEcCCCC---eEEEEeCC---------CcEEEeecCCCceeeEecccCCCCCCCCCCC
Q 000080 2206 DFEDYVDPPATV--ENISTRAFSSHPLRP---FFLVGSSN---------THIYLWEFGKDKATATYGVLPAANVPPPYAL 2271 (2389)
Q Consensus 2206 ~~~~~~d~~atv--~ni~VrsVAFsPdG~---~LASGS~D---------gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~ 2271 (2389)
... ..+++.- =-..--.+.|++-|. .|++.--| .++++-++...++...+. . .
T Consensus 204 ~~~--~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~---k--------~ 270 (566)
T KOG2315|consen 204 EGQ--HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL---K--------E 270 (566)
T ss_pred ccc--cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC---C--------C
Confidence 111 0111110 000112456777777 23333334 478888886334443332 1 3
Q ss_pred CCEEEEEECCCCCEEEEEeC--CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEe
Q 000080 2272 ASISALQFDHYGHRFASAAL--DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2389)
Q Consensus 2272 ~~V~sVaFSPDG~~LASgS~--DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLW 2349 (2389)
+.|++|.|||+|+-||...+ =-+|.+.|++- .++..+ -++.=+++-|+| .|++|+-||||..-|.|.+|
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEE
Confidence 77999999999999988664 57889999973 355554 234556788999 99999999999999999999
Q ss_pred eCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2350 DTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2350 D~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
|+ .+.+++.++.+- +.+.+.-+|+|.|+|.
T Consensus 342 Dv--~n~K~i~~~~a~--~tt~~eW~PdGe~flT 371 (566)
T KOG2315|consen 342 DV--PNRKLIAKFKAA--NTTVFEWSPDGEYFLT 371 (566)
T ss_pred ec--cchhhccccccC--CceEEEEcCCCcEEEE
Confidence 98 467778887754 3678899999999986
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00063 Score=84.81 Aligned_cols=117 Identities=11% Similarity=0.153 Sum_probs=95.2
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVkLWD 2299 (2389)
|.+|.|+..|..|+|||+|.+|-+|||.+++.+..|. .||...|.+-.|=|. .+.+++.+.||.||+=.
T Consensus 145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---------SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---------SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cceeeecccCceeeccCccceEEeehhhccCcccccc---------cccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 4677999999999999999999999999998877764 378888999999776 48999999999999876
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
+-..+ ...-...+..|.++|.-+|.-|++-..+.|+| +|+.|.=-|+.
T Consensus 216 i~~t~--~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g---eD~~v~~~Dlr 263 (559)
T KOG1334|consen 216 ILETG--YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG---EDAVVFHIDLR 263 (559)
T ss_pred ecccc--ceecceecccccCccceeeecCCCCCcccccc---cccceeeeeec
Confidence 64432 11223445568899999999997777888874 99999988873
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00037 Score=85.48 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=61.6
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
+..|+++||+++|+++-.|.+||+=.+..---+.+| ..||...|..++.-++- .|+|||+|+||++||++
T Consensus 154 l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf---------clGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 154 LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF---------CLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hheeeecCCCCEEEEecCCceEEEEecCcccchhhh---------ccccHhheeeeeeccCc-eeeecCCCCcEEEEecc
Confidence 478899999999999999999999776433334444 36899999999998775 59999999999999999
Q ss_pred CCC
Q 000080 2302 VGG 2304 (2389)
Q Consensus 2302 tgg 2304 (2389)
+|.
T Consensus 224 sgk 226 (390)
T KOG3914|consen 224 SGK 226 (390)
T ss_pred cCC
Confidence 983
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0033 Score=87.48 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=82.1
Q ss_pred EEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccC--CCCCCCCC---------CCCCEEEEEECCCCCEEEEEe
Q 000080 2223 RAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLP--AANVPPPY---------ALASISALQFDHYGHRFASAA 2290 (2389)
Q Consensus 2223 rsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~--gh~~p~~G---------H~~~V~sVaFSPDG~~LASgS 2290 (2389)
+.|+|+|+|. ++++-+.++.|++||+.++........-+ ..+.-..| ....-..|+|+|||+.+++-+
T Consensus 743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs 822 (1057)
T PLN02919 743 SGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS 822 (1057)
T ss_pred cEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC
Confidence 6679999998 67788889999999998775321110000 00000000 111236899999999999999
Q ss_pred CCCcEEEeeCCCCCccCcccceeeee--------------cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESCLC--------------FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl~g--------------Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
.+++|++||.+++. +.++.+ +-.....|++++ +|+++++- +.+++|++||+
T Consensus 823 ~N~rIrviD~~tg~------v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaD---t~Nn~Irvid~ 887 (1057)
T PLN02919 823 YNHKIKKLDPATKR------VTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVAD---TNNSLIRYLDL 887 (1057)
T ss_pred CCCEEEEEECCCCe------EEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEE---CCCCEEEEEEC
Confidence 99999999998752 122222 223567899999 99988874 68899999997
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.019 Score=72.81 Aligned_cols=200 Identities=7% Similarity=-0.022 Sum_probs=104.0
Q ss_pred cceeecCCCCCCeEEEEecC----CcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEEe--
Q 000080 42 STIDWLPDFAGYSWVAYGAS----SLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAA-- 115 (2389)
Q Consensus 42 ~ai~wlpD~~G~~~vAYasg----~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaAS-- 115 (2389)
-...|+|| |...++|.+- ..|.+..+.. + +.. ++.+..+ .+...+|||| +..||..
T Consensus 191 ~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~t---g-~~~------~lt~~~g---~~~~~~~SPD---G~~la~~~~ 252 (419)
T PRK04043 191 IFPKWANK--EQTAFYYTSYGERKPTLYKYNLYT---G-KKE------KIASSQG---MLVVSDVSKD---GSKLLLTMA 252 (419)
T ss_pred EeEEECCC--CCcEEEEEEccCCCCEEEEEECCC---C-cEE------EEecCCC---cEEeeEECCC---CCEEEEEEc
Confidence 36899999 6434666422 3355555322 3 222 3333222 4677899998 6677743
Q ss_pred cCCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc---eEEe--eccCCcEEEEEEeeccccc
Q 000080 116 SENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME---TVLW--KKKNTLWEIAWKFKENYPQ 189 (2389)
Q Consensus 116 yDntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD---V~IW--~~~~s~Wecvwt~~~~~~~ 189 (2389)
.++.-.||--+. ..+ .+. .++ +......-.|+|||++|+-.++. .+|| +..++..+.+.. .+. .
T Consensus 253 ~~g~~~Iy~~dl--~~g--~~~---~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~ 322 (419)
T PRK04043 253 PKGQPDIYLYDT--NTK--TLT---QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--N 322 (419)
T ss_pred cCCCcEEEEEEC--CCC--cEE---EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--c
Confidence 234445554431 112 121 233 22223356899999999977763 3444 445566654431 111 1
Q ss_pred eEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccCc
Q 000080 190 NLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRH 268 (2389)
Q Consensus 190 ~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~n 268 (2389)
..+|||||. +|-.+....-. ......-+++..-++.. . .....+ ......+|+| ||+.
T Consensus 323 ---~~~~SPDG~~Ia~~~~~~~~~---~~~~~~~I~v~d~~~g~-~-~~LT~~-~~~~~p~~SP--------DG~~---- 381 (419)
T PRK04043 323 ---NSSVSTYKNYIVYSSRETNNE---FGKNTFNLYLISTNSDY-I-RRLTAN-GVNQFPRFSS--------DGGS---- 381 (419)
T ss_pred ---CceECCCCCEEEEEEcCCCcc---cCCCCcEEEEEECCCCC-e-EECCCC-CCcCCeEECC--------CCCE----
Confidence 238999999 77666531100 00001123443222221 1 211122 2334689999 7666
Q ss_pred eEEeeecCCeEEEEEeecCCcc
Q 000080 269 VLLTCCLDGTVRLWCEMDSGKT 290 (2389)
Q Consensus 269 ILAScSdDgTVRLW~e~d~Gk~ 290 (2389)
|+.+....+.-.||...-.|..
T Consensus 382 I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 382 IMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred EEEEEccCCcEEEEEEecCCCe
Confidence 4455545677788888866654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0099 Score=72.94 Aligned_cols=153 Identities=12% Similarity=0.199 Sum_probs=95.9
Q ss_pred eEEEEEEcCCCCeEEEEe-CCCcEEEeecCCCc--ee--eEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCc
Q 000080 2221 STRAFSSHPLRPFFLVGS-SNTHIYLWEFGKDK--AT--ATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGT 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS-~DgTIRLWDl~tGk--~l--~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgT 2294 (2389)
+...+.|+|||++++... ....|+++++..+. .. ..+. ++ +| ..=+.++|+|||+++ +..-.+++
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~------~G--~GPRh~~f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-VP------PG--SGPRHLAFSPDGKYAYVVNELSNT 215 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-CS------TT--SSEEEEEE-TTSSEEEEEETTTTE
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-cc------cC--CCCcEEEEcCCcCEEEEecCCCCc
Confidence 347889999999766642 33479999997665 32 2232 12 12 446999999999866 66677899
Q ss_pred EEEeeCCCCCccCcccceeeee----c--CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEEEeec
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLC----F--SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCHE 2366 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~g----H--s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL~GH~ 2366 (2389)
|.++++....- ..+.+.+... . .....+++++| ||++|..+- -.+++|-++++...+++. ++.+...-
T Consensus 216 v~v~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsn--r~~~sI~vf~~d~~~g~l~~~~~~~~~G 291 (345)
T PF10282_consen 216 VSVFDYDPSDG-SLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSN--RGSNSISVFDLDPATGTLTLVQTVPTGG 291 (345)
T ss_dssp EEEEEEETTTT-EEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEE--CTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred EEEEeecccCC-ceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEe--ccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence 99999982110 1122222211 1 12578899999 999877653 357799999985444443 34444433
Q ss_pred CcEEEEeecccchhhhcccc
Q 000080 2367 GLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2367 ~~V~svA~~~~~~~~~s~~~ 2386 (2389)
..-+.++++|+|+|.+--|+
T Consensus 292 ~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 292 KFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEET
T ss_pred CCccEEEEeCCCCEEEEEec
Confidence 44689999999999886553
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00068 Score=84.45 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=100.3
Q ss_pred ccccccccccCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecC-------CCceeeEecccCCCCCCCCCCCCCEE
Q 000080 2203 TQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFG-------KDKATATYGVLPAANVPPPYALASIS 2275 (2389)
Q Consensus 2203 ~~~~~~~~~d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~-------tGk~l~Tl~vl~gh~~p~~GH~~~V~ 2275 (2389)
++.++..|+.+ .+.| |+++-=.+.+-++|+|.|+|||||.++ +..|.-||+ .|...|.
T Consensus 724 ~~irL~nf~GH---~~~i--Rai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~----------aHkk~i~ 788 (1034)
T KOG4190|consen 724 DHIRLCNFTGH---QEKI--RAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ----------AHKKPIH 788 (1034)
T ss_pred ceeeeecccCc---HHHh--HHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh----------hccCccc
Confidence 35566666433 2222 666666677789999999999999876 223566664 3678899
Q ss_pred EEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeee--cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCC
Q 000080 2276 ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC--FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA 2353 (2389)
Q Consensus 2276 sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g--Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~ 2353 (2389)
++-|=.|-+.+|| .||.|.|||.=.| +++..... -.+.+..|--.++-.+.|..|| ++...|||+.|...
T Consensus 789 ~igfL~~lr~i~S--cD~giHlWDPFig-----r~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 789 DIGFLADLRSIAS--CDGGIHLWDPFIG-----RLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARS 860 (1034)
T ss_pred ceeeeeccceeee--ccCcceeeccccc-----chhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeeccc
Confidence 9999999888775 5788999998765 22221111 1122333334443134555666 46889999999742
Q ss_pred CCCCceEEE---EeecCcEEEEeecccchhh
Q 000080 2354 PPTSSRASI---TCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2354 ~tg~~v~sL---~GH~~~V~svA~~~~~~~~ 2381 (2389)
-.-.|.... .+-.+-++++|.-++|||.
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaVa~~GN~l 891 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAVADKGNKL 891 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEeccCcchh
Confidence 222222222 3344568899999999993
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0067 Score=84.52 Aligned_cols=149 Identities=10% Similarity=0.114 Sum_probs=95.2
Q ss_pred EEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC------CCCCCCCCEEEEEECCCCC-EEEEEeCCCc
Q 000080 2223 RAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV------PPPYALASISALQFDHYGH-RFASAALDGT 2294 (2389)
Q Consensus 2223 rsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~------p~~GH~~~V~sVaFSPDG~-~LASgS~DgT 2294 (2389)
+.|+|+| +|.++++.+.++.|++||..+|... ++.+ .+... +........+.|+|+|||+ .+++-+.+++
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G-~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG-DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec-CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 5679999 6778899999999999999877643 3321 01000 0001123457799999998 6667777899
Q ss_pred EEEeeCCCCCccCcccce-----------eee--------ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCC
Q 000080 2295 VCTWQLEVGGRSNVRPME-----------SCL--------CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP 2355 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~-----------tl~--------gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~t 2355 (2389)
|+.||+++++. ..+. .+- ..-..-..++|++ +|.++++- +.+++|++||. .
T Consensus 764 Irv~D~~tg~~---~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVAD---s~N~rIrviD~--~- 833 (1057)
T PLN02919 764 IRALDLKTGGS---RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVAD---SYNHKIKKLDP--A- 833 (1057)
T ss_pred EEEEECCCCcE---EEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEE---CCCCEEEEEEC--C-
Confidence 99999987531 1000 000 0011235799999 89988764 58899999996 2
Q ss_pred CCceEEEEe--------------ecCcEEEEeecccchhhhc
Q 000080 2356 TSSRASITC--------------HEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2356 g~~v~sL~G--------------H~~~V~svA~~~~~~~~~s 2383 (2389)
+..+.++.| +-+....++.+++|+..++
T Consensus 834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 233444433 2234567888899875544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=79.17 Aligned_cols=134 Identities=14% Similarity=0.077 Sum_probs=100.4
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCC
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVG 2303 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tg 2303 (2389)
.+|||+|+++|+.++- .+-+-|..+=+..+.|.- .+.|.-|-++.|. ..|-.++-|+.|++|++...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-----------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-----------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-----------HHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence 3899999999998766 788888876665444421 2556777788887 56667788999999999864
Q ss_pred CccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhh
Q 000080 2304 GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2304 grs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~ 2381 (2389)
.-.....+-+..+.++++|| ||+.|... ++-|-.|.+|.+. .+...-++.-...+..++++++|+|+
T Consensus 82 -----ew~ckIdeg~agls~~~WSP-dgrhiL~t--seF~lriTVWSL~---t~~~~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 82 -----EWYCKIDEGQAGLSSISWSP-DGRHILLT--SEFDLRITVWSLN---TQKGYLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred -----eeEEEeccCCCcceeeeECC-CcceEeee--ecceeEEEEEEec---cceeEEecccccCceeEEECCCCcee
Confidence 34556677778899999999 88666554 3688899999984 23334455445667899999999985
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0057 Score=77.44 Aligned_cols=136 Identities=8% Similarity=0.058 Sum_probs=82.0
Q ss_pred EEEEEEcCCCCe-EEEEeC---CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CC--Cc
Q 000080 2222 TRAFSSHPLRPF-FLVGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LD--GT 2294 (2389)
Q Consensus 2222 VrsVAFsPdG~~-LASGS~---DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~D--gT 2294 (2389)
+.+-.|+|||+. ++..+. +..|+++|+.+|+..+... . .+.+...+|||||+++|-.. .+ ..
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~----------~g~~~~~~~SPDG~~la~~~~~~g~~~ 258 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S----------QGMLVVSDVSKDGSKLLLTMAPKGQPD 258 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C----------CCcEEeeEECCCCCEEEEEEccCCCcE
Confidence 356799999984 654443 4679999998887644322 1 13356788999998777543 34 45
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC--eEEEeeCCCCCCCceEEEEeecCcEEEE
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGLYDLF 2372 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~--TVrLWD~l~~tg~~v~sL~GH~~~V~sv 2372 (2389)
|.++|+.++. ...+..+........|+| ||+.|+-.. ..++ .|.+.|+ .+++. +.+... +. ...
T Consensus 259 Iy~~dl~~g~------~~~LT~~~~~d~~p~~SP-DG~~I~F~S--dr~g~~~Iy~~dl--~~g~~-~rlt~~-g~-~~~ 324 (419)
T PRK04043 259 IYLYDTNTKT------LTQITNYPGIDVNGNFVE-DDKRIVFVS--DRLGYPNIFMKKL--NSGSV-EQVVFH-GK-NNS 324 (419)
T ss_pred EEEEECCCCc------EEEcccCCCccCccEECC-CCCEEEEEE--CCCCCceEEEEEC--CCCCe-EeCccC-CC-cCc
Confidence 6666887652 223333333334567999 999888753 2334 4555554 34443 333211 11 224
Q ss_pred eecccchhhh
Q 000080 2373 LPLKLLNFAL 2382 (2389)
Q Consensus 2373 A~~~~~~~~~ 2382 (2389)
+.+|+|++++
T Consensus 325 ~~SPDG~~Ia 334 (419)
T PRK04043 325 SVSTYKNYIV 334 (419)
T ss_pred eECCCCCEEE
Confidence 7899999764
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=83.54 Aligned_cols=143 Identities=27% Similarity=0.489 Sum_probs=95.9
Q ss_pred ccccccCCCCCC-CcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCC
Q 000080 29 RSEFIPTAPTRS-TSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETP 107 (2389)
Q Consensus 29 ~~~~ip~ap~~~-~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~ 107 (2389)
-++|+|.+|.++ ++|++|+|. | .||||+++.|++.. + ...+++ |.||.|.- .|+.|+|.|. |
T Consensus 5 s~~tlpG~l~~sN~~A~Dw~~~--G--LiAygshslV~VVD--s--~s~q~i------qsie~h~s--~V~~VrWap~-~ 67 (1062)
T KOG1912|consen 5 SDHTLPGPLSRSNRNAADWSPS--G--LIAYGSHSLVSVVD--S--RSLQLI------QSIELHQS--AVTSVRWAPA-P 67 (1062)
T ss_pred ccccCCCCCCcccccccccCcc--c--eEEEecCceEEEEe--h--hhhhhh------hccccCcc--ceeEEEeccC-C
Confidence 367888888775 789999997 7 69999999999998 3 344667 99999975 8999999995 4
Q ss_pred CCC---------cEEEecC--CeEEEEeeCCCCCCCCccceeeEEecccceEEEEeecC---CC-CeEE--EEecceEEe
Q 000080 108 SIG---------QLAAASE--NCIFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTG---SG-DGIV--AGGMETVLW 170 (2389)
Q Consensus 108 ~~G---------eIaASyD--ntIRVw~~d~~~~kgd~~W~~~~tL~hssTV~sIAWSp---dG-~rLa--SggdDV~IW 170 (2389)
... -++|++| +.|-+|...-+ ....|.+ .+...|-++.|=+ ++ +.|+ .++..+.+|
T Consensus 68 ~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~----~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLw 140 (1062)
T KOG1912|consen 68 SPRDLLSPSSSQLLIASADISGRIILVDFVLA---SVINWLS----HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLW 140 (1062)
T ss_pred CchhccCccccceeEEeccccCcEEEEEehhh---hhhhhhc----CCCcchhheeeeeccCcchheeEEecCCcEEEEE
Confidence 332 3557776 88888876411 1122332 2455666766643 44 3344 555569999
Q ss_pred eccCCcEEEEEEeeccccceEEEEeecC
Q 000080 171 KKKNTLWEIAWKFKENYPQNLVSATWSI 198 (2389)
Q Consensus 171 ~~~~s~Wecvwt~~~~~~~~ivsvaWSp 198 (2389)
...+ .+..|+. .+.+..+.|++.-|
T Consensus 141 ntdt--G~k~Wk~-~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 141 NTDT--GEKFWKY-DYSHEILSCFRVDP 165 (1062)
T ss_pred EccC--Cceeecc-ccCCcceeeeeeCC
Confidence 7544 3444542 35566666776666
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0094 Score=80.76 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=110.9
Q ss_pred ccccccceeeccccccccccccccCCCC-----------cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCC--Ccee-
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPPAT-----------VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGK--DKAT- 2254 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~at-----------v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~t--Gk~l- 2254 (2389)
++.+..-++| +.|.+.++|+..+.+.. .++-++..+.+-++|..+|.|+.||.|++-+++. ++..
T Consensus 1058 ~~~~s~Fvsg-S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1058 SEHTSLFVSG-SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred CCCCceEEEe-cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccce
Confidence 3444567888 88888999988644443 1234678899999999999999999999999876 2111
Q ss_pred ----eEe-----------cccCCCC-C---------------------------CCCCCCCCEEEEEECCCCCEEEEEeC
Q 000080 2255 ----ATY-----------GVLPAAN-V---------------------------PPPYALASISALQFDHYGHRFASAAL 2291 (2389)
Q Consensus 2255 ----~Tl-----------~vl~gh~-~---------------------------p~~GH~~~V~sVaFSPDG~~LASgS~ 2291 (2389)
+.. .....|. . -++-| +.|++++.+|-|++++.|..
T Consensus 1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h-G~vTSi~idp~~~WlviGts 1215 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH-GLVTSIVIDPWCNWLVIGTS 1215 (1431)
T ss_pred eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc-cceeEEEecCCceEEEEecC
Confidence 000 0000000 0 04445 78999999999999999999
Q ss_pred CCcEEEeeCCCCCccCcccceeee-ecCCCeeEEEEecC--CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCL-CFSSHAMDVSYITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~-gHs~~V~sVAFSP~--DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
-|.+-+||++=+ .++.++. +|...++-|...|- ....++++|. +..+-|-+|++. +|.|.+.|-
T Consensus 1216 ~G~l~lWDLRF~-----~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~-~~~nevs~wn~~--~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1216 RGQLVLWDLRFR-----VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS-SSNNEVSTWNME--TGLRQTVLW 1282 (1431)
T ss_pred CceEEEEEeecC-----ceeecccCcccCCcceEEeeccCCCCceEEEecc-cCCCceeeeecc--cCcceEEEE
Confidence 999999999864 3444432 23345555555542 3367777763 367789999984 556655554
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0094 Score=71.48 Aligned_cols=137 Identities=12% Similarity=-0.009 Sum_probs=96.5
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCcee--eEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEee
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l--~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWD 2299 (2389)
-++.|++.|.-++++-.+|.+.+=+...+... ++++ + |.-..+..+|+-.. +.+-+|++|+.+.-||
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk---~-------He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK---V-------HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc---c-------cceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 46789999999999999999985444334322 2443 3 56778999998554 7999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
++..+. .....-.-|...|.++-=+|+.+..|||| |-|-+|++||+.. =++.+..-. -.++||-+--+|-
T Consensus 195 ~R~p~~---~i~~n~kvH~~GV~SI~ss~~~~~~I~TG---sYDe~i~~~DtRn-m~kPl~~~~-v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 195 IRIPKT---FIWHNSKVHTSGVVSIYSSPPKPTYIATG---SYDECIRVLDTRN-MGKPLFKAK-VGGGVWRIKHHPE 264 (339)
T ss_pred ecCCcc---eeeecceeeecceEEEecCCCCCceEEEe---ccccceeeeehhc-ccCccccCc-cccceEEEEecch
Confidence 996421 22233566899999999999899999996 6899999999841 122221110 1166666655553
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0016 Score=78.85 Aligned_cols=134 Identities=11% Similarity=0.097 Sum_probs=94.5
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCC-----ceeeEecccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKD-----KATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVC 2296 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tG-----k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~DgTVk 2296 (2389)
-++.|+..++++..|-.+|.|-..|++.+ .+.+.+ +|...|++++.=. ++++|.+.+.+|+|+
T Consensus 256 fAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-----------yh~Ssvtslq~Lq~s~q~LmaS~M~gkik 324 (425)
T KOG2695|consen 256 FALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-----------YHDSSVTSLQILQFSQQKLMASDMTGKIK 324 (425)
T ss_pred HHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-----------EcCcchhhhhhhccccceEeeccCcCcee
Confidence 66789999999999999999999998743 455544 4778999998865 788999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeE--EEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE----eecCcEE
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMD--VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT----CHEGLYD 2370 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~s--VAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~----GH~~~V~ 2370 (2389)
|||++.-. .-+-+++++||...-.- +-..+ ....|+++| +|--.|||.+. ++..+.++. .-+..++
T Consensus 325 LyD~R~~K--~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~G---dDcytRiWsl~--~ghLl~tipf~~s~~e~d~~ 396 (425)
T KOG2695|consen 325 LYDLRATK--CKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVG---DDCYTRIWSLD--SGHLLCTIPFPYSASEVDIP 396 (425)
T ss_pred Eeeehhhh--cccceeeeeccccccccccccccc-ccceEEEcc---CeeEEEEEecc--cCceeeccCCCCcccccccc
Confidence 99998642 11237888877643221 12223 334566665 99999999983 455555443 2334555
Q ss_pred EEeec
Q 000080 2371 LFLPL 2375 (2389)
Q Consensus 2371 svA~~ 2375 (2389)
++|+.
T Consensus 397 sv~~~ 401 (425)
T KOG2695|consen 397 SVAFD 401 (425)
T ss_pred ceehh
Confidence 66654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0022 Score=77.64 Aligned_cols=140 Identities=19% Similarity=0.279 Sum_probs=92.6
Q ss_pred cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCC-CceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCc
Q 000080 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGT 2294 (2389)
Q Consensus 2217 v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgT 2294 (2389)
.+...|.+|+++.|+..++| ++|=.|.||+++- .++..... +..++|--. +--|++-.|+|.- +.|+=.|.-|+
T Consensus 162 aHtyhiNSIS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVD-IKP~nmEeL--teVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVD-IKPANMEEL--TEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred cceeEeeeeeecCccceEee-ccceeeeeccccccCCceeEEE-ccccCHHHH--HHHHhhhccCHhHccEEEEecCCCc
Confidence 34456789999999999998 5899999999873 33322221 122332100 1347888999985 89999999999
Q ss_pred EEEeeCCCCCc--cCccccee---------eeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2295 VCTWQLEVGGR--SNVRPMES---------CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2295 VkLWDl~tggr--s~~k~l~t---------l~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
|||-|++.... ...+.+.. +.+--..|.+|-|++ +|++|+|- +=-||+|||+.. ..+.+.+.+
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsR----Dyltvk~wD~nm-e~~pv~t~~ 311 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSR----DYLTVKLWDLNM-EAKPVETYP 311 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEe----ccceeEEEeccc-cCCcceEEe
Confidence 99999985310 00011100 111225688999999 99999983 348999999842 344566666
Q ss_pred eec
Q 000080 2364 CHE 2366 (2389)
Q Consensus 2364 GH~ 2366 (2389)
-|.
T Consensus 312 vh~ 314 (433)
T KOG1354|consen 312 VHE 314 (433)
T ss_pred ehH
Confidence 554
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.006 Score=73.04 Aligned_cols=96 Identities=7% Similarity=0.104 Sum_probs=72.7
Q ss_pred eeEEEEEEcCCCC-eEEEEeCCCcEEEeecC-CCceeeEecccCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEeCCCcEE
Q 000080 2220 ISTRAFSSHPLRP-FFLVGSSNTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFD-HYGHRFASAALDGTVC 2296 (2389)
Q Consensus 2220 i~VrsVAFsPdG~-~LASGS~DgTIRLWDl~-tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFS-PDG~~LASgS~DgTVk 2296 (2389)
.+.|..+|+...+ ++.|||+|+.++.||++ .++.+-+- . .-|...|.+|.-| |++..+|+|+-|..|+
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n------~---kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~ 236 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN------S---KVHTSGVVSIYSSPPKPTYIATGSYDECIR 236 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec------c---eeeecceEEEecCCCCCceEEEecccccee
Confidence 3558888888766 78899999999999998 44444321 0 1266789999998 5689999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecC
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS 2329 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~ 2329 (2389)
+||.+.-+ +|+..-. -.+.|+.+..+|.
T Consensus 237 ~~DtRnm~----kPl~~~~-v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 237 VLDTRNMG----KPLFKAK-VGGGVWRIKHHPE 264 (339)
T ss_pred eeehhccc----CccccCc-cccceEEEEecch
Confidence 99999654 4554321 3378999998884
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0065 Score=81.54 Aligned_cols=107 Identities=16% Similarity=0.286 Sum_probs=74.1
Q ss_pred cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 000080 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2389)
Q Consensus 2217 v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVk 2296 (2389)
.+.+.++.++.---+-++|.|++-|+|-+.|+. |..-.-.+ +.+ -...|++|+|+.||++++.|=.||.|.
T Consensus 85 ~e~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~-~nL~~~~~---ne~-----v~~~Vtsvafn~dg~~l~~G~~~G~V~ 155 (1206)
T KOG2079|consen 85 LEDIAAGVISSAIVVVPIVIGTSHGHVLLSDMT-GNLGPLHQ---NER-----VQGPVTSVAFNQDGSLLLAGLGDGHVT 155 (1206)
T ss_pred ccCCCcceeeeeeeeeeEEEEcCchhhhhhhhh-cccchhhc---CCc-----cCCcceeeEecCCCceeccccCCCcEE
Confidence 334555556666667789999999999999984 43211111 111 126799999999999999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEec--CCCCEEEEe
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYIT--SSGSVIAAA 2337 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP--~DGslLASA 2337 (2389)
+||+.++ ++++.+.-|..++..|-++- .++..+.|+
T Consensus 156 v~D~~~~-----k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 156 VWDMHRA-----KILKVITEHGAPVTGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred EEEccCC-----cceeeeeecCCccceEEEEEEeCCCcEEEEc
Confidence 9999986 46666666766666554441 134455553
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0041 Score=73.46 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=64.8
Q ss_pred CCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEee
Q 000080 2272 ASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2272 ~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD 2350 (2389)
..|++++-.|.. +.++.|++||.|-|||.+... .|...+..|...++.|-|+|.++..|.|+ |+||.+.-||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~---sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA----MPVSLLKAHKAEIWEVHFHPKNPEHLFTC---SEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEccccc----chHHHHHHhhhhhhheeccCCCchheeEe---cCCCcEEEEc
Confidence 559999999885 788899999999999999763 57778889999999999999999999986 7999999999
Q ss_pred C
Q 000080 2351 T 2351 (2389)
Q Consensus 2351 ~ 2351 (2389)
.
T Consensus 253 a 253 (319)
T KOG4714|consen 253 A 253 (319)
T ss_pred C
Confidence 5
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.016 Score=73.63 Aligned_cols=168 Identities=15% Similarity=0.233 Sum_probs=101.0
Q ss_pred eecCC--CCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEEec-CCeEE
Q 000080 45 DWLPD--FAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAAS-ENCIF 121 (2389)
Q Consensus 45 ~wlpD--~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaASy-DntIR 121 (2389)
.|+-| ...|--++|..+..+.+-| +-..+ +|.. ++-... =.-+.|.||| .|..++++ --.|-
T Consensus 170 ~WL~d~~~RDQf~v~~d~~~~~svfw--N~~~n-----~p~~---ie~Ren-WTetyv~wSP----~GTYL~t~Hk~GI~ 234 (698)
T KOG2314|consen 170 SWLMDDKCRDQFVVQDDVKTTVSVFW--NSKFN-----EPSL---IEEREN-WTETYVRWSP----KGTYLVTFHKQGIA 234 (698)
T ss_pred HHHhCccccceEEEEecCcceeEEEc--cccCC-----chhh---hhhhhc-ceeeeEEecC----CceEEEEEecccee
Confidence 46744 3444346777777677777 42222 1111 111111 2367899999 58889887 46899
Q ss_pred EEeeCCCCCCCCccceeeEEecccceEEEEeecCCCCeEEEEecc-------------eEEeeccCCcEEEEEEe--ecc
Q 000080 122 VFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGME-------------TVLWKKKNTLWEIAWKF--KEN 186 (2389)
Q Consensus 122 Vw~~d~~~~kgd~~W~~~~tL~hssTV~sIAWSpdG~rLaSggdD-------------V~IW~~~~s~Wecvwt~--~~~ 186 (2389)
+|.-. .|...+-+.|. -|.-|.|||+-+||+|=|-. +.||+-.++.-+..+.. .+.
T Consensus 235 lWGG~--------~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~ 305 (698)
T KOG2314|consen 235 LWGGE--------SFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY 305 (698)
T ss_pred eecCc--------cHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc
Confidence 99755 25555555666 68899999999999987652 55777665554444333 233
Q ss_pred ccceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEecc
Q 000080 187 YPQNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRP 252 (2389)
Q Consensus 187 ~~~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~P 252 (2389)
..-+++ .||.|++ +|--.++.- -|. ...+....-...-....|..++|+|
T Consensus 306 ~~WP~f--rWS~DdKy~Arm~~~si-------------sIy-Etpsf~lld~Kslki~gIr~FswsP 356 (698)
T KOG2314|consen 306 LKWPIF--RWSHDDKYFARMTGNSI-------------SIY-ETPSFMLLDKKSLKISGIRDFSWSP 356 (698)
T ss_pred cccceE--EeccCCceeEEeccceE-------------EEE-ecCceeeecccccCCccccCcccCC
Confidence 334565 9999999 886555321 111 1111111112244667899999999
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0076 Score=46.29 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=28.1
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
|...|++++|+|+++.+++++.|++|++||
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 567899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.046 Score=65.78 Aligned_cols=122 Identities=12% Similarity=0.175 Sum_probs=80.5
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCC------------------------------------
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVP------------------------------------ 2266 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p------------------------------------ 2266 (2389)
|.++||||+.+||.+...|+|+++|+- |..+.+.. |++..+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I~--p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVIP--PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEcC--cccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 888999999999999999999999984 43332221 111000
Q ss_pred -------------------CCCCCCCEEEEEECCCCCEEEEEeCC-----------CcEEEeeCCCCC----------c-
Q 000080 2267 -------------------PPYALASISALQFDHYGHRFASAALD-----------GTVCTWQLEVGG----------R- 2305 (2389)
Q Consensus 2267 -------------------~~GH~~~V~sVaFSPDG~~LASgS~D-----------gTVkLWDl~tgg----------r- 2305 (2389)
..++...|.++.+.|.-+.|..|+.. .-+.-|.+-.+. .
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence 12234569999999998888777642 135567553320 0
Q ss_pred -------cCccccee-----e-eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2306 -------SNVRPMES-----C-LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2306 -------s~~k~l~t-----l-~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
.+...+.+ . ......|..+..|| ||++||+. ..+|.|.||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~i---h~sG~lsLW~i 258 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACI---HFSGSLSLWEI 258 (282)
T ss_pred ccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEE---EcCCeEEEEec
Confidence 00000111 1 12357889999999 99999997 47899999998
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0071 Score=78.27 Aligned_cols=133 Identities=21% Similarity=0.343 Sum_probs=99.2
Q ss_pred EEEEEcCC--CC-eEEEEeCCCcEEEeecCCCc--eeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEE
Q 000080 2223 RAFSSHPL--RP-FFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVC 2296 (2389)
Q Consensus 2223 rsVAFsPd--G~-~LASGS~DgTIRLWDl~tGk--~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVk 2296 (2389)
-.+.|+|. -+ ++++-|. ..--+|++.... .+.-+ + .||+..|+.+-|+|+- ..+|+++.|-.|.
T Consensus 71 ad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~--l-------hghsraitd~n~~~q~pdVlatcsvdt~vh 140 (1081)
T KOG0309|consen 71 ADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFV--L-------HGHSRAITDINFNPQHPDVLATCSVDTYVH 140 (1081)
T ss_pred cceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEE--E-------ecCccceeccccCCCCCcceeeccccccce
Confidence 33455554 33 4665544 445589987443 34322 2 3688999999999986 7999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
.||+++.. .|+....--......|+++-.++..||+ +.++.|++||+. ..+..+.++.+|...|+.+++
T Consensus 141 ~wd~rSp~----~p~ys~~~w~s~asqVkwnyk~p~vlas----shg~~i~vwd~r-~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 141 AWDMRSPH----RPFYSTSSWRSAASQVKWNYKDPNVLAS----SHGNDIFVWDLR-KGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred eeeccCCC----cceeeeecccccCceeeecccCcchhhh----ccCCceEEEecc-CCCcceEEecccceeeehHHH
Confidence 99999863 6777766555667889999879999997 588999999984 233458999999988887765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.17 Score=62.50 Aligned_cols=151 Identities=9% Similarity=0.067 Sum_probs=99.8
Q ss_pred EEEEEcCCCCeEEEEe-CCCcEEEeecCC-CceeeEecccCCCCCCCCCC----CCCEEEEEECCCCCEEEEEeCC-CcE
Q 000080 2223 RAFSSHPLRPFFLVGS-SNTHIYLWEFGK-DKATATYGVLPAANVPPPYA----LASISALQFDHYGHRFASAALD-GTV 2295 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS-~DgTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH----~~~V~sVaFSPDG~~LASgS~D-gTV 2295 (2389)
-.|+++++|++|++++ .-|.|.+.-++. |......+. ..|.-+ ..| ..-+....|+|||+++++.+.. ..|
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-~~h~g~-~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV-VKHTGS-GPHERQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceee-eecCCC-CCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence 4569999999999988 568899999865 543322111 122211 112 0128999999999999998853 458
Q ss_pred EEeeCCCCCccCcccceee-eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee---------
Q 000080 2296 CTWQLEVGGRSNVRPMESC-LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--------- 2365 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl-~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH--------- 2365 (2389)
.+++++.|. +.+.... ..-...-+-++|+| +|++.-.. +--++||-+|++... ...+..+|-|
T Consensus 170 ~~y~~~dg~---L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v--~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 170 FLYDLDDGK---LTPADPAEVKPGAGPRHIVFHP-NGKYAYLV--NELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred EEEEcccCc---cccccccccCCCCCcceEEEcC-CCcEEEEE--eccCCEEEEEEEcCC-CceEEEeeeeccCccccCC
Confidence 999999763 2232221 12334557799999 99976664 268999999998532 2334444443
Q ss_pred cCcEEEEeecccchhhh
Q 000080 2366 EGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2366 ~~~V~svA~~~~~~~~~ 2382 (2389)
..+...|..+++|||.-
T Consensus 243 ~~~~aaIhis~dGrFLY 259 (346)
T COG2706 243 TNWAAAIHISPDGRFLY 259 (346)
T ss_pred CCceeEEEECCCCCEEE
Confidence 35677899999999853
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.014 Score=71.04 Aligned_cols=74 Identities=20% Similarity=0.461 Sum_probs=62.7
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.+++++|.|..++|.||+.|..|-+||++-.+-+ .+. +.||.+.|+++..-+--++|.|++.||-|-+||.
T Consensus 199 ~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~e--------l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 199 EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYE--------LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred ceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eee--------eccchhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 5689999999999999999999999999744433 222 1367799999999999999999999999999998
Q ss_pred CCC
Q 000080 2301 EVG 2303 (2389)
Q Consensus 2301 ~tg 2303 (2389)
+..
T Consensus 270 n~~ 272 (404)
T KOG1409|consen 270 NVK 272 (404)
T ss_pred cce
Confidence 764
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.021 Score=73.62 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=58.2
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2272 ~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
..|.+.++||+.++|+.|..||+|.|||..++ +.++..+.-....++|+| +|.+++.| ++-|.+++||+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-------~t~~~ka~~~P~~iaWHp-~gai~~V~---s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRG-------VTLLAKAEFIPTLIAWHP-DGAIFVVG---SEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCC-------eeeeeeecccceEEEEcC-CCcEEEEE---cCCceEEEEEe
Confidence 66999999999999999999999999999864 223334455667899999 99999986 57799999998
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.46 Score=66.16 Aligned_cols=164 Identities=23% Similarity=0.413 Sum_probs=99.2
Q ss_pred eeEEEEcCCCCCCCcEEEec-----CCeEEEEeeCCCCCCCCccceeeEEe---cccceEEEEeecCCCCeEEEEec-ce
Q 000080 97 VTSISWSPETPSIGQLAAAS-----ENCIFVFAHDSASSKGSFCWSQNAIL---VQGTKVEAIEWTGSGDGIVAGGM-ET 167 (2389)
Q Consensus 97 Vk~VaWSPd~~~~GeIaASy-----DntIRVw~~d~~~~kgd~~W~~~~tL---~hssTV~sIAWSpdG~rLaSggd-DV 167 (2389)
=-+++|.| +|.++|+. ...|.+|++..-. -|+| +| .....|..|+||+||+-||..-. .|
T Consensus 259 e~~l~WrP----sG~lIA~~q~~~~~~~VvFfErNGLr-hgeF------~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~v 327 (928)
T PF04762_consen 259 EGALSWRP----SGNLIASSQRLPDRHDVVFFERNGLR-HGEF------TLRFDPEEEKVIELAWNSDSEILAVWLEDRV 327 (928)
T ss_pred cCCccCCC----CCCEEEEEEEcCCCcEEEEEecCCcE-eeeE------ecCCCCCCceeeEEEECCCCCEEEEEecCCc
Confidence 34789999 57777653 2567777776211 1111 12 24668999999999999995544 59
Q ss_pred EEeeccCCcEEEEEEeeccccceEEEEeecCCCc----eEeeec-ccc----cccC---C-CCCCCceeEEEeeCCCccc
Q 000080 168 VLWKKKNTLWEIAWKFKENYPQNLVSATWSIEGP----SATAAS-MSQ----LDLL---G-PKEAGKCVFICCSDGKSEY 234 (2389)
Q Consensus 168 ~IW~~~~s~Wecvwt~~~~~~~~ivsvaWSpdG~----fATag~-dik----f~~~---~-~~~~~kpV~V~~~dg~~~~ 234 (2389)
++|-.+|.-|=.=-.+.-.....+..+.|+|.-. +.|.++ ... +... + ..++...|.|. ||..-.
T Consensus 328 qLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVI--DG~~ll 405 (928)
T PF04762_consen 328 QLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVI--DGNKLL 405 (928)
T ss_pred eEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEE--eCCeEE
Confidence 9999999998432222211222233379999744 445423 211 1111 1 12223445555 444311
Q ss_pred e-------------eecccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeec
Q 000080 235 I-------------KLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMD 286 (2389)
Q Consensus 235 ~-------------~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d 286 (2389)
. ..+..-+.+|+.|+++|+ +.. +|.-..||++-+|+...
T Consensus 406 lTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~--------~~~-----~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELELPSPVNDVAFSPS--------NSR-----FAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EecccccCCCchHhceEEcCCCCcEEEEEeCC--------CCe-----EEEEECCCCEEEEEecC
Confidence 1 123566789999999993 222 88888999999999654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.18 Score=62.33 Aligned_cols=128 Identities=15% Similarity=0.194 Sum_probs=84.1
Q ss_pred eEEEEEEcCCCCeEEE-EeCCCcEEEeecCCC--c--eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CCCc
Q 000080 2221 STRAFSSHPLRPFFLV-GSSNTHIYLWEFGKD--K--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGT 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LAS-GS~DgTIRLWDl~tG--k--~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~DgT 2294 (2389)
.-|-|+|||+|++... .=-+++|-+|+.... + ++++...+|+.- .| ..+..+|..+|||++|-+.- ....
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF---~g-~~~~aaIhis~dGrFLYasNRg~ds 267 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF---TG-TNWAAAIHISPDGRFLYASNRGHDS 267 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc---CC-CCceeEEEECCCCCEEEEecCCCCe
Confidence 4488899999997443 458999999999863 2 344443344431 23 26789999999999876544 4456
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCC
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT 2356 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg 2356 (2389)
|-+.-+...+. .+..+....-|...-+++.|+| +|++|+.++- ++.+|.++.....+|
T Consensus 268 I~~f~V~~~~g-~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q--~sd~i~vf~~d~~TG 325 (346)
T COG2706 268 IAVFSVDPDGG-KLELVGITPTEGQFPRDFNINP-SGRFLIAANQ--KSDNITVFERDKETG 325 (346)
T ss_pred EEEEEEcCCCC-EEEEEEEeccCCcCCccceeCC-CCCEEEEEcc--CCCcEEEEEEcCCCc
Confidence 66666654320 1222222233444468999999 9999998863 556799999854443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.011 Score=70.99 Aligned_cols=140 Identities=15% Similarity=0.198 Sum_probs=93.1
Q ss_pred cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc-eeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCc
Q 000080 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-ATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGT 2294 (2389)
Q Consensus 2217 v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk-~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgT 2294 (2389)
.+...+.+|+|+.|.+.++| ++|=.|.||++.-.. +..... +..|+|.-. .--|++-.|+|.- +.|.=.+..|+
T Consensus 170 aH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVD-iKP~nmeeL--teVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 170 AHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVD-IKPHNMEEL--TEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred cceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEe-ccCccHHHH--HHHHhhcccCHhHcceEEEecCCCc
Confidence 34456789999999999998 589999999987433 222111 233443210 1347888999985 67777888999
Q ss_pred EEEeeCCCCCc-cCcccce--e--------eeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2295 VCTWQLEVGGR-SNVRPME--S--------CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2295 VkLWDl~tggr-s~~k~l~--t--------l~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
|+|-|++.... -+.+.+. + +.+-...|.++.|++ +|++|++- +=-||+|||+.. ...++.++.
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsR----dyltvkiwDvnm-~k~pikTi~ 319 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSR----DYLTVKIWDVNM-AKNPIKTIP 319 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEe----ccceEEEEeccc-ccCCceeec
Confidence 99999985310 0001111 1 112235678999999 99999984 557999999853 346677765
Q ss_pred eec
Q 000080 2364 CHE 2366 (2389)
Q Consensus 2364 GH~ 2366 (2389)
-|.
T Consensus 320 ~h~ 322 (460)
T COG5170 320 MHC 322 (460)
T ss_pred hHH
Confidence 454
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.021 Score=69.64 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=90.9
Q ss_pred EEEEEEcCCCC-eEEEEeCCCcEEEeecCCCc-ee---eEecccCCCCCC---CCCCCCCEEEEEECCCCCEEEEEeCCC
Q 000080 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDK-AT---ATYGVLPAANVP---PPYALASISALQFDHYGHRFASAALDG 2293 (2389)
Q Consensus 2222 VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk-~l---~Tl~vl~gh~~p---~~GH~~~V~sVaFSPDG~~LASgS~Dg 2293 (2389)
|.+.-|||..- .++-.|.-|+|||-|+++.. |- +.|. .|-.... ..+-...|..|+||+.|++++|-+. -
T Consensus 216 ITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE-epedp~~rsffseiIsSISDvKFs~sGryilsRDy-l 293 (433)
T KOG1354|consen 216 ITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE-EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-L 293 (433)
T ss_pred HhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc-cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-c
Confidence 46778999754 67778999999999997443 11 1221 1111000 1112356899999999999998765 8
Q ss_pred cEEEeeCCCCCccCcccceeeeecCC------------Cee---EEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc
Q 000080 2294 TVCTWQLEVGGRSNVRPMESCLCFSS------------HAM---DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~tl~gHs~------------~V~---sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~ 2358 (2389)
||+|||++... +|+.+.+-|.. .|. .++|+. ++..++|| |-.+..|+.+.. ...+.
T Consensus 294 tvk~wD~nme~----~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TG---sy~n~frvf~~~-~gsk~ 364 (433)
T KOG1354|consen 294 TVKLWDLNMEA----KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTG---SYNNVFRVFNLA-RGSKE 364 (433)
T ss_pred eeEEEeccccC----CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecc---cccceEEEecCC-CCcce
Confidence 99999998653 67777777652 333 588998 88999996 467899999952 22222
Q ss_pred eEEEEeecCc
Q 000080 2359 RASITCHEGL 2368 (2389)
Q Consensus 2359 v~sL~GH~~~ 2368 (2389)
-.++.+....
T Consensus 365 d~tl~asr~~ 374 (433)
T KOG1354|consen 365 DFTLEASRKN 374 (433)
T ss_pred eecccccccC
Confidence 3455544433
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0057 Score=76.71 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCcc--CcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCe
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS--NVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs--~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~T 2345 (2389)
.||...|++++-=.+-+-|.|+|.|.|||||.++..+.. ...+-.+++.|...|.++.|-- |-+.+|+ -|+-
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S-----cD~g 805 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS-----CDGG 805 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee-----ccCc
Confidence 367889999987777889999999999999999775321 1136678899999999999998 7788886 4788
Q ss_pred EEEeeCC
Q 000080 2346 VVVWDTL 2352 (2389)
Q Consensus 2346 VrLWD~l 2352 (2389)
|.+||..
T Consensus 806 iHlWDPF 812 (1034)
T KOG4190|consen 806 IHLWDPF 812 (1034)
T ss_pred ceeeccc
Confidence 9999974
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.18 Score=60.54 Aligned_cols=128 Identities=11% Similarity=0.033 Sum_probs=86.3
Q ss_pred EEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccce-
Q 000080 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPME- 2312 (2389)
Q Consensus 2234 LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~- 2312 (2389)
+.-+|.|.|+|+.++.-+...... |. + .-.+.+.++||||+++++.++-..|-++-+...+. ....
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~-----h~-~----~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se---y~~~~ 197 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAV-----HN-Q----NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE---YIENI 197 (344)
T ss_pred eeeccCCcceeEEEEecCccccee-----ec-c----ccceeeeEEcCCCceEEEecCCCcceEEEeCCccc---eeeee
Confidence 444689999999999655432221 21 0 02288999999999999999999999998876431 2222
Q ss_pred eeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCC---CCCCceEEEEeecCcEEEEeecccc
Q 000080 2313 SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA---PPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2313 tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~---~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
....-+.+-....|+. .....|++ +.|+++.|||+.. +....-.+=..|.+.++.+-+++.|
T Consensus 198 ~~a~t~D~gF~~S~s~-~~~~FAv~---~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSE-NDLQFAVV---FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred EecccCCCceeeeecc-CcceEEEE---ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence 2333445566788998 56788886 6999999999841 1111111223488888888888654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.09 Score=67.55 Aligned_cols=116 Identities=13% Similarity=0.203 Sum_probs=83.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
|.+++|--.--|..|+....|+=.++.+|+-+..|.. ..+.|++|..+|--..||.|+.||+|..||.++
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~----------~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET----------DSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEcccccccccccc----------ccccceeeeecCccceEEecccCceEEEecchh
Confidence 4445554333344555566799999999998877752 136799999999999999999999999999987
Q ss_pred CCcc-CcccceeeeecCCC-----eeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2303 GGRS-NVRPMESCLCFSSH-----AMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2303 ggrs-~~k~l~tl~gHs~~-----V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
..+. .+....+...|.+. |+++.|+- ||-.+|.| +.+|.|-|+|+.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVG---ts~G~v~iyDLR 258 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVG---TSTGSVLIYDLR 258 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecC-CceeEEee---ccCCcEEEEEcc
Confidence 4210 01111222234444 99999997 89999874 678999999984
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.24 Score=62.69 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=95.5
Q ss_pred eEEEEEEcCCCCeEEEEeCCC-cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRPFFLVGSSNT-HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~Dg-TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
+||-..+.-++.-++-|-.|| .+-++|.++|+..+.-. ..+.|.+|+.+|||+.++.|-.-..+-+-|
T Consensus 361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-----------~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-----------DLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-----------CccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 356677777777788899999 99999998877544321 236799999999999999988888777779
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC--CCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS--NGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS--~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
+.+| +++.+.. ...+-|.+++++| ++++||=| +-+ --+.|+|+|+. +++. .....-++-=.+=|+.|+
T Consensus 430 idng---nv~~idk--S~~~lItdf~~~~-nsr~iAYa-fP~gy~tq~Iklydm~--~~Ki-y~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 430 IDNG---NVRLIDK--SEYGLITDFDWHP-NSRWIAYA-FPEGYYTQSIKLYDMD--GGKI-YDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred ecCC---CeeEecc--cccceeEEEEEcC-CceeEEEe-cCcceeeeeEEEEecC--CCeE-EEecCCcccccCcccCCC
Confidence 9987 2233322 2457889999999 89999964 311 23579999983 3332 222212221234566666
Q ss_pred chh
Q 000080 2378 LNF 2380 (2389)
Q Consensus 2378 ~~~ 2380 (2389)
||.
T Consensus 500 ~ry 502 (668)
T COG4946 500 GRY 502 (668)
T ss_pred CcE
Confidence 664
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.049 Score=70.39 Aligned_cols=71 Identities=11% Similarity=0.217 Sum_probs=58.9
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.+.+++|+...|+.|..||+|.|||..++....+ + +. =..+.|+++|+|..|++|+.-|.+++||+
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k---a~--------~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K---AE--------FIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e---ec--------ccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 458899999999999999999999999877743322 1 11 22588999999999999999999999999
Q ss_pred CCC
Q 000080 2301 EVG 2303 (2389)
Q Consensus 2301 ~tg 2303 (2389)
.-.
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.026 Score=71.17 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=83.2
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCC-CEEEEeecCCCCCeEE
Q 000080 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSG-SVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2269 GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DG-slLASAG~sS~D~TVr 2347 (2389)
+|.+-|..|.|+..|..|+|||.|.+|-+||-..+. ..+.--.||...|...-|.|..| +.|++. +.||.||
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~----~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~---s~dgqvr 212 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS----PKLSFESGHCNNVFQAKFIPFSGDRTIVTS---SRDGQVR 212 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccC----cccccccccccchhhhhccCCCCCcCceec---cccCcee
Confidence 567899999999999999999999999999998762 22333467888787778988733 567764 6999999
Q ss_pred EeeCCCCCCCc--eEEEEeecCcEEEEeecccchhhh
Q 000080 2348 VWDTLAPPTSS--RASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2348 LWD~l~~tg~~--v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
+=.++ .++.+ ...+.-|.+.|.-+|.-|.-..-+
T Consensus 213 ~s~i~-~t~~~e~t~rl~~h~g~vhklav~p~sp~~f 248 (559)
T KOG1334|consen 213 VSEIL-ETGYVENTKRLAPHEGPVHKLAVEPDSPKPF 248 (559)
T ss_pred eeeec-cccceecceecccccCccceeeecCCCCCcc
Confidence 99985 45555 466788999999999887755443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.66 Score=54.10 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=92.1
Q ss_pred eeEEEEEEcCCCCeEEEEeCC--------CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEe
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSN--------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAA 2290 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~D--------gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS 2290 (2389)
.....+++.|+|.+.++.+.. +.|..++.. ++....... ...-..|+|+|||+.| ++-+
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-----------~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-----------LGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-----------ESSEEEEEEETTSSEEEEEET
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-----------cccccceEECCcchheeeccc
Confidence 455788999999999987755 567888876 664443321 2446899999999866 5777
Q ss_pred CCCcEEEeeCCCCCc--cCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCc
Q 000080 2291 LDGTVCTWQLEVGGR--SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGL 2368 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggr--s~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~ 2368 (2389)
..+.|.-+++...+. ...+.+..+..-.+....+++.. +|++.++. ...+.|.+.|. .|+.+..+..-...
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~---~~~~~I~~~~p---~G~~~~~i~~p~~~ 226 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVAD---WGGGRIVVFDP---DGKLLREIELPVPR 226 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEE---ETTTEEEEEET---TSCEEEEEE-SSSS
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEE---cCCCEEEEECC---CccEEEEEcCCCCC
Confidence 888888888864321 01122222222223466799999 99988763 25678999994 57878877766668
Q ss_pred EEEEeec-ccch
Q 000080 2369 YDLFLPL-KLLN 2379 (2389)
Q Consensus 2369 V~svA~~-~~~~ 2379 (2389)
++++++- ++++
T Consensus 227 ~t~~~fgg~~~~ 238 (246)
T PF08450_consen 227 PTNCAFGGPDGK 238 (246)
T ss_dssp EEEEEEESTTSS
T ss_pred EEEEEEECCCCC
Confidence 9999983 4433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.014 Score=69.07 Aligned_cols=73 Identities=19% Similarity=0.367 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLW 2298 (2389)
.|.+++-||..+ ++++|++||.|.|||+++..-...+ +. .|...++.|-|.|. +..|.++|+||.+--|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~--l~-------ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL--LK-------AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH--HH-------HhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 478999999866 6888999999999999888533333 22 35688999999986 6899999999999999
Q ss_pred eCCC
Q 000080 2299 QLEV 2302 (2389)
Q Consensus 2299 Dl~t 2302 (2389)
|-.+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9874
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.16 Score=60.83 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=83.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc--eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk--~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
.+.+++++||+++.++-++-..|-++.+.+.. .++++. +. .++.=.++.||...-.||++..||++.+|
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~---a~------t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE---AP------TSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe---cc------cCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 35788999999999999999999999987553 344332 11 13445789999999999999999999999
Q ss_pred eCCCCCccCcccc----eeeeecCCCeeEEEEecCCCC---EEEEeecCCCCCeEEEeeC
Q 000080 2299 QLEVGGRSNVRPM----ESCLCFSSHAMDVSYITSSGS---VIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2299 Dl~tggrs~~k~l----~tl~gHs~~V~sVAFSP~DGs---lLASAG~sS~D~TVrLWD~ 2351 (2389)
|++..+ .|. .+-.-|.+.++.+.|+| .|. ++.|-++ +-+.|-|+
T Consensus 231 DVR~~~----tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhf----s~~hv~D~ 281 (344)
T KOG4532|consen 231 DVRNMA----TPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHF----SRVHVVDT 281 (344)
T ss_pred Eecccc----cchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCc----ceEEEEEc
Confidence 998753 122 12234899999999997 443 4445432 45777887
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.14 Score=67.88 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=79.4
Q ss_pred cCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-----CCEEEEEeCCCcEEEeeCCC
Q 000080 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-----GHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2228 sPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-----G~~LASgS~DgTVkLWDl~t 2302 (2389)
.-+|.++||+|.||+|.+--+.+++...++.- .-.+.+|+|+|| .++|++|+.-| +-|..=+-
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-----------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~w 147 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-----------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNW 147 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEec-----------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhh
Confidence 34699999999999999999999987665530 145899999999 57999999998 77764332
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
-+ +-..+ .+..-.+.|.++.|.. ++||=| +|--||++|+ ++++.+..++
T Consensus 148 lg--nk~~v-~l~~~eG~I~~i~W~g---~lIAWa----nd~Gv~vyd~--~~~~~l~~i~ 196 (846)
T KOG2066|consen 148 LG--NKDSV-VLSEGEGPIHSIKWRG---NLIAWA----NDDGVKVYDT--PTRQRLTNIP 196 (846)
T ss_pred hc--Cccce-eeecCccceEEEEecC---cEEEEe----cCCCcEEEec--cccceeeccC
Confidence 22 11122 2333457899999985 899976 4455999998 3444444444
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.054 Score=41.52 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=32.3
Q ss_pred ccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEee
Q 000080 2309 RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2309 k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD 2350 (2389)
++...+.+|...|.+++|.+ ++++++++ +.|++|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASA---SDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEe---cCCCeEEEcC
Confidence 35667778999999999999 77888886 5899999997
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.86 Score=57.34 Aligned_cols=102 Identities=14% Similarity=0.034 Sum_probs=70.7
Q ss_pred CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC----------CCcEEEeeCCCCCccCccc
Q 000080 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL----------DGTVCTWQLEVGGRSNVRP 2310 (2389)
Q Consensus 2241 gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~----------DgTVkLWDl~tggrs~~k~ 2310 (2389)
++|.+-|..+++-+.++.+ | ..... + +||||+.|..+.. +.+|.+||+++. ++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~--G-------~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-----~~ 89 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG--G-------FLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-----LP 89 (352)
T ss_pred ceEEEEECCCCEEEEEEEc--c-------CCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-----cE
Confidence 8999999999988877742 2 22222 4 9999988877766 899999999986 23
Q ss_pred ceeeee-------cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2311 MESCLC-------FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2311 l~tl~g-------Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
+..+.- ....-..++++| ||++|..+-. +.++.|-+.|+ ++++-+..+.
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~-~p~~~V~VvD~--~~~kvv~ei~ 145 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQF-SPSPAVGVVDL--EGKAFVRMMD 145 (352)
T ss_pred EeEEccCCCchhhccCccceEEECC-CCCEEEEecC-CCCCEEEEEEC--CCCcEEEEEe
Confidence 433321 122334799999 9998886532 23899999998 4555555544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.86 Score=58.03 Aligned_cols=103 Identities=12% Similarity=0.003 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCC-cEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCe
Q 000080 2267 PPYALASISALQFDHYGHRFASAALDG-TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2267 ~~GH~~~V~sVaFSPDG~~LASgS~Dg-TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~T 2345 (2389)
+.||...|+=.+|.-|++-++.|..|| .+-+.|.+++. +.....--+.|.+|..+| ||+.++.| +| .
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~lg~I~av~vs~-dGK~~vva----Nd-r 422 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------VKRIEKDLGNIEAVKVSP-DGKKVVVA----ND-R 422 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce------EEEeeCCccceEEEEEcC-CCcEEEEE----cC-c
Confidence 567788899999999999999999999 89999999862 344445557899999999 99988874 44 3
Q ss_pred EEEeeCCCCCCCceEEEEeecCcEEEEeecccchhh
Q 000080 2346 VVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2346 VrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~ 2381 (2389)
..||=+...+++....=+...+-|+.++.||.++|+
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcCCceeE
Confidence 566654445666544446677889999999999986
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.04 E-value=3.6 Score=57.61 Aligned_cols=92 Identities=17% Similarity=0.172 Sum_probs=61.3
Q ss_pred hHHH--HhhcchhHHHHHHHHhcCChhHHHHHHHHhcCChhhhhhhhhhh-ccCCChhhHhhHhhhcccc-ccccCChhH
Q 000080 1315 NAYV--LLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV-EKHGGPLERNLVTKFILPS-SIERGDYWL 1390 (2389)
Q Consensus 1315 NAya--LLsK~Ry~~AAAFFLLAg~lkDAV~Vc~~~L~D~qLAi~IaRLy-Egd~gp~l~~lL~~~vLp~-a~~~gDrwL 1390 (2389)
+||| |..+++|+.||-+|..+|.++.|+. +.+--+|.+=|+.|++.. +|.+ .+. . +-+.+... ..++...=.
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~-a~~~~~dWr~~l~~a~ql~~~~d-e~~-~-~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGKLEKALK-AYKECGDWREALSLAAQLSEGKD-ELV-I-LAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhccHHHHHH-HHHHhccHHHHHHHHHhhcCCHH-HHH-H-HHHHHHHHHHHcccchhH
Confidence 4554 8899999999999999999999996 566679999999988854 4432 111 1 11222221 122233345
Q ss_pred HHHHHHHhCChhHHHHHHhc
Q 000080 1391 TSLLEWELGNYSQSFLTMLG 1410 (2389)
Q Consensus 1391 ~S~a~W~L~~~~~Av~~Ll~ 1410 (2389)
+.++.=-+.++.+|+..|++
T Consensus 1019 a~il~e~~sd~~~av~ll~k 1038 (1265)
T KOG1920|consen 1019 AKILLEYLSDPEEAVALLCK 1038 (1265)
T ss_pred HHHHHHHhcCHHHHHHHHhh
Confidence 56666677888888877764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.36 Score=63.22 Aligned_cols=102 Identities=17% Similarity=0.305 Sum_probs=67.4
Q ss_pred eEEEEecCCcEE-EEeCCC--Ccccccc---cccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEEe-cCCeEEEEeeC
Q 000080 54 SWVAYGASSLLV-ISHFPS--PLSQEEA---LIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAA-SENCIFVFAHD 126 (2389)
Q Consensus 54 ~~vAYasg~~vV-I~~l~S--P~~~~e~---~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaAS-yDntIRVw~~d 126 (2389)
.+||+|...+++ ++-|.- |+....- ..-=...|.++||.. .|-.|.|+-. ..++-.| -++.|-||---
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~--sV~vvTWNe~---~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA--SVMVVTWNEN---NQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc--eEEEEEeccc---cccccccCCCceEEEEeee
Confidence 379999766554 443332 1111000 000135699999976 8999999996 5555555 36899999765
Q ss_pred CCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc
Q 000080 127 SASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME 166 (2389)
Q Consensus 127 ~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD 166 (2389)
+| +|...-+-. -.|+|.+++|+.+|.+|.-+-.|
T Consensus 102 ----kg--sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD 136 (1189)
T KOG2041|consen 102 ----KG--SWCEEMINNRNKSVVVSMSWNLDGTKICIVYED 136 (1189)
T ss_pred ----cc--cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc
Confidence 34 476543333 58899999999999999877666
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.23 Score=63.60 Aligned_cols=143 Identities=15% Similarity=0.073 Sum_probs=92.2
Q ss_pred eeEEEEEEcCCCCeEEEEe---CC-CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEE-eCCCc
Q 000080 2220 ISTRAFSSHPLRPFFLVGS---SN-THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGT 2294 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS---~D-gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASg-S~DgT 2294 (2389)
..+..-+|+|+++.++--+ .. ..|.++|+.+|+....+. .+++ -..-+|||||++||-. ..||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~----------~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGN----------NGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCc----------cCCccCCCCCCEEEEEECCCCC
Confidence 3456668999999765543 22 469999999998654442 2233 3556899999877755 45677
Q ss_pred EEEe--eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEE
Q 000080 2295 VCTW--QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLF 2372 (2389)
Q Consensus 2295 VkLW--Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~sv 2372 (2389)
..|| |+.++ +...+....|... .=.|+| ||+.|+-+. +.++.-+||-+. ..+..++.+.-+.+.-..-
T Consensus 262 ~~iy~~dl~~~---~~~~Lt~~~gi~~---~Ps~sp-dG~~ivf~S--dr~G~p~I~~~~-~~g~~~~riT~~~~~~~~p 331 (425)
T COG0823 262 PDIYLMDLDGK---NLPRLTNGFGINT---SPSWSP-DGSKIVFTS--DRGGRPQIYLYD-LEGSQVTRLTFSGGGNSNP 331 (425)
T ss_pred ccEEEEcCCCC---cceecccCCcccc---CccCCC-CCCEEEEEe--CCCCCcceEEEC-CCCCceeEeeccCCCCcCc
Confidence 6666 55543 1122233333332 445889 999999873 566666888774 3445556665555555577
Q ss_pred eecccchhhhc
Q 000080 2373 LPLKLLNFALS 2383 (2389)
Q Consensus 2373 A~~~~~~~~~s 2383 (2389)
..+|+|++++.
T Consensus 332 ~~SpdG~~i~~ 342 (425)
T COG0823 332 VWSPDGDKIVF 342 (425)
T ss_pred cCCCCCCEEEE
Confidence 88899988764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.5 Score=54.33 Aligned_cols=148 Identities=19% Similarity=0.142 Sum_probs=92.3
Q ss_pred EEEEEcCCCCeEEEE--eCC-----CcEE-----------EeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC
Q 000080 2223 RAFSSHPLRPFFLVG--SSN-----THIY-----------LWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH 2284 (2389)
Q Consensus 2223 rsVAFsPdG~~LASG--S~D-----gTIR-----------LWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~ 2284 (2389)
..+.+.|||+.|+.+ +-. |..| .=|..+|+.+.... + |+.-|..+++-++.++||.
T Consensus 102 Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~-L-----p~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 102 HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE-L-----PPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee-c-----CccccccceeeEEecCCCc
Confidence 566899999866654 322 2233 34556777655432 2 2233668899999999997
Q ss_pred EEEEEeCCCc-------EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCC
Q 000080 2285 RFASAALDGT-------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS 2357 (2389)
Q Consensus 2285 ~LASgS~DgT-------VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~ 2357 (2389)
.+...=..|- |-+++-...-+...-+-.......+.+-+|||++ +|.++|.+ +-..+.+-+||. .++.
T Consensus 176 V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~t--sPrGg~~~~~d~--~tg~ 250 (305)
T PF07433_consen 176 VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVT--SPRGGRVAVWDA--ATGR 250 (305)
T ss_pred EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeC-CCCEEEEE--CCCCCEEEEEEC--CCCC
Confidence 6666544332 3344332210000001112344568899999999 88888765 479999999997 5666
Q ss_pred ceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2358 SRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2358 ~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.+....-.. +..||+..++ |.+|.
T Consensus 251 ~~~~~~l~D--~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 251 LLGSVPLPD--ACGVAPTDDG-FLVSS 274 (305)
T ss_pred EeeccccCc--eeeeeecCCc-eEEeC
Confidence 666554443 8888888888 77664
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.4 Score=53.36 Aligned_cols=143 Identities=15% Similarity=0.099 Sum_probs=83.1
Q ss_pred eeEEEEEEcCCCCeEEEE-----eCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC-
Q 000080 2220 ISTRAFSSHPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG- 2293 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASG-----S~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg- 2293 (2389)
..+...+++|||+++|-+ ++..+|++.|+.+|+.+..-- +. ..-..+.|.+||+.|.-...|.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~---------~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--EN---------PKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EE---------EESEEEEECTTSSEEEEEECSTT
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cc---------cccceEEEeCCCCEEEEEEeCcc
Confidence 345678999999987743 344669999999998765421 11 1113499999999887776554
Q ss_pred ----------cEEEeeCCCCCccCcccceeeeecCCC--eeEEEEecCCCCEEEEeecCCCC-CeEEEeeCCCC--CCCc
Q 000080 2294 ----------TVCTWQLEVGGRSNVRPMESCLCFSSH--AMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAP--PTSS 2358 (2389)
Q Consensus 2294 ----------TVkLWDl~tggrs~~k~l~tl~gHs~~--V~sVAFSP~DGslLASAG~sS~D-~TVrLWD~l~~--tg~~ 2358 (2389)
.|++|.+.++. + ....-+++.... ..++..++ ||++|.....+..+ ..|.+=|+... ....
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~-~--~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQ-S--EDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-G-G--G-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred cccccCCCCcEEEEEECCCCh-H--hCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 38899998752 1 212223333322 45788888 88987643323344 55777776311 1123
Q ss_pred eEEEEeecCcEEEEeeccc
Q 000080 2359 RASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2359 v~sL~GH~~~V~svA~~~~ 2377 (2389)
...+.-+..++....-+..
T Consensus 269 ~~~l~~~~~~~~~~v~~~~ 287 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDHHG 287 (414)
T ss_dssp EEEEEESSSS-EEEEEEET
T ss_pred cEEEeCCCCceEEEEEccC
Confidence 5555555555554443333
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=93.15 E-value=2.4 Score=49.48 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=84.6
Q ss_pred EEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEeCCCcEEEeeCC
Q 000080 2224 AFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD-HYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2224 sVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFS-PDG~~LASgS~DgTVkLWDl~ 2301 (2389)
.++|.+ +|.++.+.-..+.|.-||..+++.. .+. + .....+++. ++|+.+++ ..++ +.+.|.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~-~-----------~~~~G~~~~~~~g~l~v~-~~~~-~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VID-L-----------PGPNGMAFDRPDGRLYVA-DSGG-IAVVDPD 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEE-S-----------SSEEEEEEECTTSEEEEE-ETTC-EEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEe-c-----------CCCceEEEEccCCEEEEE-EcCc-eEEEecC
Confidence 458998 8888898889999999999776543 332 1 126788888 67655554 4444 4555998
Q ss_pred CCCccCcccceeee--e-cCCCeeEEEEecCCCCEEEEeecCCC-CCe--EEEeeCCCCCCCceEEEEeecCcEEEEeec
Q 000080 2302 VGGRSNVRPMESCL--C-FSSHAMDVSYITSSGSVIAAAGHSSN-GIN--VVVWDTLAPPTSSRASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2302 tggrs~~k~l~tl~--g-Hs~~V~sVAFSP~DGslLASAG~sS~-D~T--VrLWD~l~~tg~~v~sL~GH~~~V~svA~~ 2375 (2389)
++. .+.+.... . .....+++++.| +|++.+|...... ... =+||.+. +. ..+..+...-...+.++++
T Consensus 69 ~g~---~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~-~~-~~~~~~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 69 TGK---VTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRID-PD-GKVTVVADGLGFPNGIAFS 142 (246)
T ss_dssp TTE---EEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEE-TT-SEEEEEEEEESSEEEEEEE
T ss_pred CCc---EEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEEC-CC-CeEEEEecCcccccceEEC
Confidence 862 23444432 1 345678999999 9998887421100 000 2344442 22 3355555556777899999
Q ss_pred ccchhh
Q 000080 2376 KLLNFA 2381 (2389)
Q Consensus 2376 ~~~~~~ 2381 (2389)
++|+..
T Consensus 143 ~dg~~l 148 (246)
T PF08450_consen 143 PDGKTL 148 (246)
T ss_dssp TTSSEE
T ss_pred Ccchhe
Confidence 999853
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=1 Score=55.78 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=110.3
Q ss_pred cccccccccccccCCC------CcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc----eeeEecccCCCCCCCCC
Q 000080 2200 GWETQDDFEDYVDPPA------TVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK----ATATYGVLPAANVPPPY 2269 (2389)
Q Consensus 2200 ~~d~~~~~~~~~d~~a------tv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk----~l~Tl~vl~gh~~p~~G 2269 (2389)
+.|.++|+|-=.|.-. +....+++++++++..+.|..|=++|++.-+-+...- .++.+ +.
T Consensus 43 s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~----------~~ 112 (404)
T KOG1409|consen 43 SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY----------LA 112 (404)
T ss_pred cccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh----------hh
Confidence 5566666663322222 2222467999999999999999999999998775432 22333 24
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCC----------------------------C--------ccCccccee
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVG----------------------------G--------RSNVRPMES 2313 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tg----------------------------g--------rs~~k~l~t 2313 (2389)
|...|..+-|+---.++.+++.|..+.===.+.+ + .....++.+
T Consensus 113 h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 113 HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 6799999999988889999988866541111111 0 023467888
Q ss_pred eeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc-eEEEEeecCcEEEEe
Q 000080 2314 CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGLYDLFL 2373 (2389)
Q Consensus 2314 l~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~-v~sL~GH~~~V~svA 2373 (2389)
+.+|.+.+++.++.| .-.+|-|+ +.|..|-+||+- -.+. ...++||.+.|+.+.
T Consensus 193 ~~~h~~~~~~l~Wd~-~~~~LfSg---~~d~~vi~wdig--g~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDP-GQRLLFSG---ASDHSVIMWDIG--GRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred EcCcccceEEEEEcC-CCcEEEec---cccCceEEEecc--CCcceeeeeccchhhhhhhh
Confidence 999999999999999 44666664 689999999983 2223 577899998887553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.9 Score=60.05 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=81.1
Q ss_pred HhccCCc-chhHHHHHHhcchHHHHHHHhcccCCCchhHHhHhh-cccChHHHHHHHHhhHHHHhhcchhHHHHHHHHhc
Q 000080 1258 YLKKKDP-KDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLS-RNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLG 1335 (2389)
Q Consensus 1258 y~~~kDP-~dcaLfYlAL~Kk~vL~gL~k~~~~~k~~~m~~FLs-nDFse~RWr~AAlKNAyaLLsK~Ry~~AAAFFLLA 1335 (2389)
+...+-+ .++||+|.-.||..--..-||.+++=++ .+.-.. -.+..+.-+.-|.+=+=.|.-+||+..||---++.
T Consensus 948 hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~--~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGKLEKALKAYKECGDWRE--ALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHH--HHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 3333334 4699999999999888888998775332 222222 25667777777788888888899998888777664
Q ss_pred -CChhHHHHHHHHhcCChhhhhhhhhhhccCCChhhHhhHhhhcccccc
Q 000080 1336 -GDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFILPSSI 1383 (2389)
Q Consensus 1336 -g~lkDAV~Vc~~~L~D~qLAi~IaRLyEgd~gp~l~~lL~~~vLp~a~ 1383 (2389)
++.+.||.++++- .-..-|+-+|++++.++ ++++.+.|.+.
T Consensus 1026 ~sd~~~av~ll~ka-~~~~eAlrva~~~~~~d------~iee~l~~al~ 1067 (1265)
T KOG1920|consen 1026 LSDPEEAVALLCKA-KEWEEALRVASKAKRDD------IIEEVLKPALL 1067 (1265)
T ss_pred hcCHHHHHHHHhhH-hHHHHHHHHHHhcccch------HHHHHHhHHHH
Confidence 5788999998864 44556888888887553 45555544443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.32 Score=62.20 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=89.8
Q ss_pred CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC----
Q 000080 2218 ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG---- 2293 (2389)
Q Consensus 2218 ~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg---- 2293 (2389)
++-+++.+.+||.|.+|++.-. .-|.+|+-..+..+..+. | ..|.-+.|||.|+.|.+=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-----------~-~~V~~~~fSP~~kYL~tw~~~pi~~p 97 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-----------H-PDVKYLDFSPNEKYLVTWSREPIIEP 97 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-----------c-CCceecccCcccceeeeeccCCccCh
Confidence 3457788999999999998544 459999977665444442 3 6699999999999999976543
Q ss_pred -----------cEEEeeCCCCCccCcccceeeeecCCC--ee-EEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCC--
Q 000080 2294 -----------TVCTWQLEVGGRSNVRPMESCLCFSSH--AM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-- 2357 (2389)
Q Consensus 2294 -----------TVkLWDl~tggrs~~k~l~tl~gHs~~--V~-sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~-- 2357 (2389)
.+++||+.+| ..+.++.+-... .+ -+.|+- |..+.|=- -...+.|.++. +.-.
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg-----~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv----v~~sl~i~e~t-~n~~~~ 166 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASG-----MIVFSFNGISQPYLGWPVLKFSI-DDKYVARV----VGSSLYIHEIT-DNIEEH 166 (561)
T ss_pred hhccCCccccCceeEEeccCc-----eeEeeccccCCcccccceeeeee-cchhhhhh----ccCeEEEEecC-CccccC
Confidence 4999999987 234444433333 34 467887 55766643 23468898841 1100
Q ss_pred ceEEEEeecCcEEEEeecccchh
Q 000080 2358 SRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2358 ~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
..+.|. ..+|..++.+|-||-
T Consensus 167 p~~~lr--~~gi~dFsisP~~n~ 187 (561)
T COG5354 167 PFKNLR--PVGILDFSISPEGNH 187 (561)
T ss_pred chhhcc--ccceeeEEecCCCCC
Confidence 022222 356777777776653
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.52 Score=60.84 Aligned_cols=106 Identities=11% Similarity=0.177 Sum_probs=77.2
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-----------
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL----------- 2291 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~----------- 2291 (2389)
.-|.|||-|.+|+|=-.-| |.||-=.+-..++.| +| ..|.-|.|||.-++|+|=|.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-----------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e 280 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-----------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNE 280 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-----------cC-CCceeeecCCccceEEEecCCccccCcccCC
Confidence 4579999999999977666 899984433444544 24 55999999999999999653
Q ss_pred CCcEEEeeCCCCCccCcccceeeee--cCCCee-EEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLC--FSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~g--Hs~~V~-sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
...+++||++||. ..+++.+ -...++ =+.||. |++++|.-+ .++|-|+++
T Consensus 281 ~~~l~IWDI~tG~-----lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~----~~sisIyEt 333 (698)
T KOG2314|consen 281 GQQLIIWDIATGL-----LKRSFPVIKSPYLKWPIFRWSH-DDKYFARMT----GNSISIYET 333 (698)
T ss_pred CceEEEEEccccc-----hhcceeccCCCccccceEEecc-CCceeEEec----cceEEEEec
Confidence 2679999999983 2333333 223333 377888 889999853 368999996
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.3 Score=50.11 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcc---------------c----ccccccccc-----eeeeeccCC
Q 000080 38 TRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLS---------------Q----EEALIGPIF-----RQVFALSDN 93 (2389)
Q Consensus 38 ~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~---------------~----~e~~~~p~~-----~Qviegh~d 93 (2389)
....++++||+| | -+|.+++..|.|+....|.. . .+.+.++.+ ....+...+
T Consensus 4 ps~~~~l~WS~D--g--~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 79 (173)
T PF12657_consen 4 PSCPNALAWSED--G--QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMD 79 (173)
T ss_pred CCCCcCeeECCC--C--CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccc
Confidence 345689999999 7 59999999999993222330 0 111111222 011111111
Q ss_pred C-----CCeeEEEEcCC--CCCCCcEEE--ecCCeEEEEeeCCCCCCCCccceeeEEec
Q 000080 94 S-----LPVTSISWSPE--TPSIGQLAA--ASENCIFVFAHDSASSKGSFCWSQNAILV 143 (2389)
Q Consensus 94 ~-----~dVk~VaWSPd--~~~~GeIaA--SyDntIRVw~~d~~~~kgd~~W~~~~tL~ 143 (2389)
. ..|..++|||- .+.+++++| ..++.|.||.+.... .-.|.+...+.
T Consensus 80 ~~~~s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~---~~~W~~v~dvs 135 (173)
T PF12657_consen 80 DEEISSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP---QGEWNRVADVS 135 (173)
T ss_pred ccccccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc---cccEeeeeehh
Confidence 0 26999999993 112245665 468999999987211 34688877664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.62 Score=61.19 Aligned_cols=122 Identities=16% Similarity=0.225 Sum_probs=83.4
Q ss_pred cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCC-C----CCCCCCCCCEEEEEECCCCCEEEEEeC
Q 000080 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA-N----VPPPYALASISALQFDHYGHRFASAAL 2291 (2389)
Q Consensus 2217 v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh-~----~p~~GH~~~V~sVaFSPDG~~LASgS~ 2291 (2389)
.+|+....++|+-+..+||.|+.||.+|+-.+++...-....++.+. + -..-||.+.|+-|.++.+.+.|-|...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 34577789999999999999999999999988755321111110000 0 024578899999999999999999999
Q ss_pred CCcEEEeeCCCCCccCcccceeee--ecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCL--CFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~--gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
+|-|-+|-+-.|. ....+. --.+-|.+++|.. ||+.|+-+ -+||.|-
T Consensus 92 ~GlIiVWmlykgs-----W~EEMiNnRnKSvV~SmsWn~-dG~kIcIv---YeDGavI 140 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGS-----WCEEMINNRNKSVVVSMSWNL-DGTKICIV---YEDGAVI 140 (1189)
T ss_pred CceEEEEeeeccc-----HHHHHhhCcCccEEEEEEEcC-CCcEEEEE---EccCCEE
Confidence 9999999887651 111110 0123466777777 77777654 3555553
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=92.30 E-value=2.6 Score=53.18 Aligned_cols=121 Identities=9% Similarity=0.118 Sum_probs=76.8
Q ss_pred EEcC-CCCeEEEEeCCCcEEEeecCCCc-----eeeEeccc-CCCCCCCCCCCCCEEEEEECCCCCEEEEEe--------
Q 000080 2226 SSHP-LRPFFLVGSSNTHIYLWEFGKDK-----ATATYGVL-PAANVPPPYALASISALQFDHYGHRFASAA-------- 2290 (2389)
Q Consensus 2226 AFsP-dG~~LASGS~DgTIRLWDl~tGk-----~l~Tl~vl-~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-------- 2290 (2389)
.|.| ||+++..... |+|.+=|+.... ...++..- +.....| ....-++++|||+++-.+.
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP----~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP----GGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC----CcceeEEEcCCCCEEEEEecCCccccc
Confidence 4566 8887766555 999999964332 22222100 0000111 3345599999998877743
Q ss_pred --CCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCC-EEEEeecCCCCCeEEEeeCCCCCCCceEEE
Q 000080 2291 --LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2389)
Q Consensus 2291 --~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGs-lLASAG~sS~D~TVrLWD~l~~tg~~v~sL 2362 (2389)
..+.|.++|.+++. .+..+. -...+..++|+| ||+ +|.++ ...+++|.+-|+ ++++.++++
T Consensus 275 k~~~~~V~ViD~~t~k-----vi~~i~-vG~~~~~iavS~-Dgkp~lyvt--n~~s~~VsViD~--~t~k~i~~i 338 (352)
T TIGR02658 275 KTASRFLFVVDAKTGK-----RLRKIE-LGHEIDSINVSQ-DAKPLLYAL--STGDKTLYIFDA--ETGKELSSV 338 (352)
T ss_pred cCCCCEEEEEECCCCe-----EEEEEe-CCCceeeEEECC-CCCeEEEEe--CCCCCcEEEEEC--cCCeEEeee
Confidence 22579999999862 333332 234788999999 888 66654 236788999997 566777776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=92.25 E-value=3 Score=45.13 Aligned_cols=65 Identities=25% Similarity=0.219 Sum_probs=48.1
Q ss_pred EEEEEEcC---CCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 000080 2222 TRAFSSHP---LRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2222 VrsVAFsP---dG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL 2297 (2389)
|+++++.. ||+ .|+.||+|..||+|+ ....+..+.. .+.|.+++-... .+||-|-.+|||-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-----------~~~v~~L~~~~~-~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-----------TDKVTSLCSLGG-GRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-----------ccceEEEEEcCC-CEEEEEecCCEEEE
Confidence 46666665 443 799999999999998 3466666641 266888877776 57999999998876
Q ss_pred eeC
Q 000080 2298 WQL 2300 (2389)
Q Consensus 2298 WDl 2300 (2389)
+|-
T Consensus 68 Y~~ 70 (111)
T PF14783_consen 68 YDR 70 (111)
T ss_pred EeC
Confidence 644
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.25 Score=61.78 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEECCCCC-EEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeE
Q 000080 2268 PYALASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~-~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TV 2346 (2389)
++|...|+.++|||..+ .+..++.+++|+|-|+++. ....++..| ..+++++|.-++...|- || -..|.|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-----~~vssy~a~-~~~wSC~wDlde~h~IY-aG--l~nG~V 260 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-----CVVSSYIAY-NQIWSCCWDLDERHVIY-AG--LQNGMV 260 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccc-----eeeeheecc-CCceeeeeccCCcceeE-Ee--ccCceE
Confidence 45668899999999988 7999999999999999984 355666667 78999999996666665 45 378999
Q ss_pred EEeeCCCCCCCceEEEEe--ecCcEEEEeecc
Q 000080 2347 VVWDTLAPPTSSRASITC--HEGLYDLFLPLK 2376 (2389)
Q Consensus 2347 rLWD~l~~tg~~v~sL~G--H~~~V~svA~~~ 2376 (2389)
-++|+..+ ...++.+.+ -.+.|..|+|.+
T Consensus 261 lvyD~R~~-~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 261 LVYDMRQP-EGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred EEEEccCC-CchHhhhhhhhccCcceeecccC
Confidence 99999643 334555544 334566666543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.56 Score=58.89 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=80.2
Q ss_pred EEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWD 2299 (2389)
||.++|+|..+ ++..+|-+.+|+|.|+++-.++.+|. + | ..+++.+|.-|. +.+-.|...|.|.++|
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a-------~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---A-------Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceeeehee---c-------c-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 48899999988 88999999999999999888888874 2 2 679999999885 7888999999999999
Q ss_pred CCCCCccCcccceeeee--cCCCeeEEEEecC-----CCCEEEEeecCCCCCeEEEeeCC
Q 000080 2300 LEVGGRSNVRPMESCLC--FSSHAMDVSYITS-----SGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~g--Hs~~V~sVAFSP~-----DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
++... .++..+.+ -..+|-.|+..++ .|.+|+.+ +.+ ..-|++.
T Consensus 265 ~R~~~----~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~---lt~--l~f~ei~ 315 (463)
T KOG1645|consen 265 MRQPE----GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFA---LTV--LQFYEIV 315 (463)
T ss_pred ccCCC----chHhhhhhhhccCcceeecccCccccccccceEEee---ehh--hhhhhhh
Confidence 98753 23333333 1223333333332 56777654 233 5678863
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.58 E-value=1 Score=60.10 Aligned_cols=128 Identities=12% Similarity=0.177 Sum_probs=87.6
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC------------CEEEEEe
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG------------HRFASAA 2290 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG------------~~LASgS 2290 (2389)
.++.|+|.| +||-|| ...|-+=|..+-+.++++. -|...|++|.+.|-- -.||+++
T Consensus 19 ~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie----------~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIE----------LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred cccccCccc-eEEEec-CceEEEEehhhhhhhhccc----------cCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 567999987 444444 4478899988778777763 256889999987632 2788999
Q ss_pred CCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC--CC-CEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecC
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS--SG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~--DG-slLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~ 2367 (2389)
..|.|-|||...+. ..--++.|.+.+-+++|.|. +. .+|+.= ..-.+|.||++ .+|+.+.....-+.
T Consensus 87 ~~GrIil~d~~~~s-----~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI---h~ss~lvLwnt--dtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 87 ISGRIILVDFVLAS-----VINWLSHSNDSVQDLCWVPARDDSRDVLLAI---HGSSTLVLWNT--DTGEKFWKYDYSHE 156 (1062)
T ss_pred ccCcEEEEEehhhh-----hhhhhcCCCcchhheeeeeccCcchheeEEe---cCCcEEEEEEc--cCCceeeccccCCc
Confidence 99999999999862 33445668899999999864 33 344332 23479999987 35666655443333
Q ss_pred cEEEE
Q 000080 2368 LYDLF 2372 (2389)
Q Consensus 2368 ~V~sv 2372 (2389)
-..|+
T Consensus 157 iLs~f 161 (1062)
T KOG1912|consen 157 ILSCF 161 (1062)
T ss_pred ceeee
Confidence 33333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.35 Score=64.26 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=82.5
Q ss_pred EEEcCCCCeEEEEe----CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2225 FSSHPLRPFFLVGS----SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2225 VAFsPdG~~LASGS----~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
++|||..|++|.+| ..|.|.|+- .+|+.-+... .|- | ++++++.|.--.||+|=+-|.+.+|..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~-------h---atSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPV-------H---ATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cce-------e---hhhhccChHHHHHhhccccceeEEEec
Confidence 48999999999888 567888886 4666433221 122 2 688999999999999999999999988
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
++.+ ...-..-|...+.-+.||| +|+.|.|+ -.=+.|-+|...
T Consensus 89 ~~~e-----~htv~~th~a~i~~l~wS~-~G~~l~t~---d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTE-----THTVVETHPAPIQGLDWSH-DGTVLMTL---DNPGSVHLWRYD 131 (1416)
T ss_pred CCce-----eeeeccCCCCCceeEEecC-CCCeEEEc---CCCceeEEEEee
Confidence 7642 2222345889999999999 99999996 366789999974
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.58 Score=61.29 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=60.3
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
+.|..+.|+|--.+||.+..+|.|-+.-+. -+.+.++ |.||- +.++++++.|||+.||.|=.||||+|-|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti--------p~p~~-~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI--------PIPGE-NVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec--------cCCCC-ccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 356889999999999999999999887765 4455555 11221 2235999999999999999999999999
Q ss_pred CCCCC
Q 000080 2300 LEVGG 2304 (2389)
Q Consensus 2300 l~tgg 2304 (2389)
+++|+
T Consensus 91 ve~~~ 95 (665)
T KOG4640|consen 91 VEKGG 95 (665)
T ss_pred ccCCC
Confidence 99985
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.8 Score=57.87 Aligned_cols=143 Identities=12% Similarity=0.114 Sum_probs=83.7
Q ss_pred cCCCCeEEEEeCCCcEEEeecCC----CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEE-EeCCCcEEEeeCCC
Q 000080 2228 HPLRPFFLVGSSNTHIYLWEFGK----DKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGTVCTWQLEV 2302 (2389)
Q Consensus 2228 sPdG~~LASGS~DgTIRLWDl~t----Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LAS-gS~DgTVkLWDl~t 2302 (2389)
.++|++... .+++|.+.|..+ +..+..+- |.. ...+.|++||||+++.. +..+++|.+-|+++
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI--PVG--------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV--PVP--------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEE--ECC--------CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 346665444 367899999887 43333321 211 45689999999986655 55699999999987
Q ss_pred CCc---cCcccceeeeec---CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCC----CC----CceEEEEeecCc
Q 000080 2303 GGR---SNVRPMESCLCF---SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP----PT----SSRASITCHEGL 2368 (2389)
Q Consensus 2303 ggr---s~~k~l~tl~gH---s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~----tg----~~v~sL~GH~~~ 2368 (2389)
... ..+++-....+. ...-.-.+|.+ +|....|- --|..|..||+-.+ .| .-+..+.-|-+.
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytsl---f~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTL---FLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeE---eecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 410 000111111110 11123477888 88866553 47889999997310 11 224445444433
Q ss_pred EEEE-----eecccchhhhcccc
Q 000080 2369 YDLF-----LPLKLLNFALSKCR 2386 (2389)
Q Consensus 2369 V~sv-----A~~~~~~~~~s~~~ 2386 (2389)
-... .-.++|.|.+|-|.
T Consensus 429 gh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 429 GHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ceeeecCCCcCCCCCCEEEEccc
Confidence 3333 34789999988764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=90.81 E-value=18 Score=44.61 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=111.0
Q ss_pred ccccccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeec-cCCCCCeeEEEEcCCCC
Q 000080 29 RSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFAL-SDNSLPVTSISWSPETP 107 (2389)
Q Consensus 29 ~~~~ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qvieg-h~d~~dVk~VaWSPd~~ 107 (2389)
....+|-.|-..=|.++|+|| + ..+|||.+++-|-.- +-+...-++|.|-- ..++ -. ..|..+.+-+-.-
T Consensus 34 ~kcqVpkD~~PQWRkl~WSpD--~-tlLa~a~S~G~i~vf--dl~g~~lf~I~p~~--~~~~d~~--~Aiagl~Fl~~~~ 104 (282)
T PF15492_consen 34 GKCQVPKDPNPQWRKLAWSPD--C-TLLAYAESTGTIRVF--DLMGSELFVIPPAM--SFPGDLS--DAIAGLIFLEYKK 104 (282)
T ss_pred EEEecCCCCCchheEEEECCC--C-cEEEEEcCCCeEEEE--ecccceeEEcCccc--ccCCccc--cceeeeEeecccc
Confidence 345678889999999999999 7 599999777766554 32222222322210 0111 01 2344444444210
Q ss_pred C----CCcEEEecCCeEEEEeeCCCCCCCCccceeeEEec----ccceEEEEeecCCCCeEEEEecc---eEEeeccCCc
Q 000080 108 S----IGQLAAASENCIFVFAHDSASSKGSFCWSQNAILV----QGTKVEAIEWTGSGDGIVAGGME---TVLWKKKNTL 176 (2389)
Q Consensus 108 ~----~GeIaASyDntIRVw~~d~~~~kgd~~W~~~~tL~----hssTV~sIAWSpdG~rLaSggdD---V~IW~~~~s~ 176 (2389)
+ .+-|+..|++.+|=|--..+.+ .. .....++. ...-|.++.|+|.-+.|+.||-. ..+++ ....
T Consensus 105 s~~ws~ELlvi~Y~G~L~Sy~vs~gt~-q~--y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-a~~~ 180 (282)
T PF15492_consen 105 SAQWSYELLVINYRGQLRSYLVSVGTN-QG--YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-ASSC 180 (282)
T ss_pred ccccceeEEEEeccceeeeEEEEcccC-Cc--ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-cccc
Confidence 0 0234468998888886421111 11 22333332 36679999999988877766654 33443 2333
Q ss_pred EEEEEEeeccccceEE-EEeecCCCceEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCC
Q 000080 177 WEIAWKFKENYPQNLV-SATWSIEGPSATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTR 255 (2389)
Q Consensus 177 Wecvwt~~~~~~~~iv-svaWSpdG~fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~ 255 (2389)
.-++|+.-.. .+.| .+. +-+..+.+......|.+- + ...+......-..-|..+.=+|
T Consensus 181 GLtaWRiL~~--~Pyyk~v~-~~~~~~~~~~~~~~~~~~-------~--------~~~~fs~~~~~~d~i~kmSlSP--- 239 (282)
T PF15492_consen 181 GLTAWRILSD--SPYYKQVT-SSEDDITASSKRRGLLRI-------P--------SFKFFSRQGQEQDGIFKMSLSP--- 239 (282)
T ss_pred CceEEEEcCC--CCcEEEcc-ccCccccccccccceeec-------c--------ceeeeeccccCCCceEEEEECC---
Confidence 4444543222 2333 232 111112111110001000 0 0000001122235678889999
Q ss_pred CCCCCCCccccCceEEeeecCCeEEEEEee
Q 000080 256 RHSPGDTKRSQRHVLLTCCLDGTVRLWCEM 285 (2389)
Q Consensus 256 ~~~~~Dgk~~~~nILAScSdDgTVRLW~e~ 285 (2389)
||+. ||++..+|.+-||++-
T Consensus 240 -----dg~~-----La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 240 -----DGSL-----LACIHFSGSLSLWEIP 259 (282)
T ss_pred -----CCCE-----EEEEEcCCeEEEEecC
Confidence 7777 9999999999999954
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.7 Score=53.75 Aligned_cols=143 Identities=10% Similarity=0.049 Sum_probs=89.4
Q ss_pred EEEEEcCC-CCeEEEEeCCCc-EEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-----CCcE
Q 000080 2223 RAFSSHPL-RPFFLVGSSNTH-IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-----DGTV 2295 (2389)
Q Consensus 2223 rsVAFsPd-G~~LASGS~DgT-IRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-----DgTV 2295 (2389)
..++.||+ +..++-+-.-|+ ..+||..+|+.++.+..- +|+ ..-=--.|||||++|-+.-. .|.|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-------~gR-HFyGHg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-------PGR-HFYGHGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-------CCC-EEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence 56799995 446777777666 589999999988877421 221 22223579999999988654 4899
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC-----CCCeEEEee-C-------C-CCCCCceE-
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS-----NGINVVVWD-T-------L-APPTSSRA- 2360 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS-----~D~TVrLWD-~-------l-~~tg~~v~- 2360 (2389)
-+||++.+ .+.+..+..|.-.--++.+.| ||+.|+.|= ++ +.+-.||.= + + ..+|+.+.
T Consensus 80 gVyd~~~~----~~ri~E~~s~GIGPHel~l~p-DG~tLvVAN-GGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 80 GVYDAARG----YRRIGEFPSHGIGPHELLLMP-DGETLVVAN-GGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred EEEECcCC----cEEEeEecCCCcChhhEEEcC-CCCEEEEEc-CCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 99999832 144555555554445788999 886666541 11 111223321 1 1 23455543
Q ss_pred -EE--EeecCcEEEEeecccch
Q 000080 2361 -SI--TCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2361 -sL--~GH~~~V~svA~~~~~~ 2379 (2389)
.| .-|...++=+|...+|.
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred eecCccccccceeeEEecCCCc
Confidence 35 45777787777777765
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.4 Score=59.18 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=83.8
Q ss_pred EEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceee
Q 000080 2235 LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC 2314 (2389)
Q Consensus 2235 ASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl 2314 (2389)
++.+.+..|-|=|+++|-. +.|. ..+.|.+.+|.--++.+-.|...|.|-.-|++.+-+-+..+...
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-----------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r- 294 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-----------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR- 294 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-----------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-
Confidence 4556777888888887743 2332 24779999999999999999999999999999852111122222
Q ss_pred eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc---eEEEEeecCcEE
Q 000080 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RASITCHEGLYD 2370 (2389)
Q Consensus 2315 ~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~---v~sL~GH~~~V~ 2370 (2389)
.-|...|.++..-.-+++.|.++ +.+++|+|||... .+| |++.+||.|.-.
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS---~M~gkikLyD~R~--~K~~~~V~qYeGHvN~~a 348 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMAS---DMTGKIKLYDLRA--TKCKKSVMQYEGHVNLSA 348 (425)
T ss_pred EEcCcchhhhhhhccccceEeec---cCcCceeEeeehh--hhcccceeeeeccccccc
Confidence 23888888776654355666653 5899999999853 345 899999976544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.33 Score=64.81 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEe
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLW 2349 (2389)
|...-++++||-+.+.|+.|+..|.|++.++.+| .......||+..|.-|-=+- ||.++.|.+. +.--...||
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-----~~e~s~ncH~SavT~vePs~-dgs~~Ltsss-~S~PlsaLW 1172 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-----SMEESVNCHQSAVTLVEPSV-DGSTQLTSSS-SSSPLSALW 1172 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCc-----cccccccccccccccccccC-Ccceeeeecc-ccCchHHHh
Confidence 4477899999999999999999999999999997 35567789999999888888 8888877542 233368899
Q ss_pred eCCCCCCCceEEEEeecCcEEEEeeccc-chhhhcccc
Q 000080 2350 DTLAPPTSSRASITCHEGLYDLFLPLKL-LNFALSKCR 2386 (2389)
Q Consensus 2350 D~l~~tg~~v~sL~GH~~~V~svA~~~~-~~~~~s~~~ 2386 (2389)
|+- .+++.++++.+-. ++-|+.. -.+||+.|+
T Consensus 1173 ~~~-s~~~~~Hsf~ed~----~vkFsn~~q~r~~gt~~ 1205 (1516)
T KOG1832|consen 1173 DAS-STGGPRHSFDEDK----AVKFSNSLQFRALGTEA 1205 (1516)
T ss_pred ccc-cccCccccccccc----eeehhhhHHHHHhcccc
Confidence 984 4666788886432 3444433 345666654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.69 E-value=3.1 Score=53.85 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=92.5
Q ss_pred EEEEcCCCCeEEEEe-----------CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe--
Q 000080 2224 AFSSHPLRPFFLVGS-----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-- 2290 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS-----------~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-- 2290 (2389)
.+-|++.|.+|+.=- ...+++|.++. ++-++... +-.+.|...+|+|++++||..+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~----------~~~~pVhdf~W~p~S~~F~vi~g~ 295 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEK----------DLKDPVHDFTWEPLSSRFAVISGY 295 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeec-ccccceec----------cccccceeeeecccCCceeEEecc
Confidence 568899999765311 23567888875 44333221 1247799999999999999876
Q ss_pred CCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEE
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYD 2370 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~ 2370 (2389)
.+-++.+.|++.. ++ +-..+..=+.+.|+| .++++..||++-.-++|.+||.. ..-.++..+.+-. .+
T Consensus 296 ~pa~~s~~~lr~N----l~----~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~-~rf~~~~~~~~~n--~s 363 (561)
T COG5354 296 MPASVSVFDLRGN----LR----FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPA-GRFKVAGAFNGLN--TS 363 (561)
T ss_pred cccceeecccccc----eE----EecCCcccccccccC-cccEEEEecCCccccceEEeccC-CceEEEEEeecCC--ce
Confidence 7889999999742 11 122344445678999 89999999999889999999962 1112344666543 44
Q ss_pred EEeecccchhhh
Q 000080 2371 LFLPLKLLNFAL 2382 (2389)
Q Consensus 2371 svA~~~~~~~~~ 2382 (2389)
-...+|+|.|..
T Consensus 364 ~~~wspd~qF~~ 375 (561)
T COG5354 364 YCDWSPDGQFYD 375 (561)
T ss_pred EeeccCCceEEE
Confidence 556778887754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.3 Score=52.76 Aligned_cols=113 Identities=8% Similarity=-0.049 Sum_probs=72.6
Q ss_pred CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCccc
Q 000080 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2389)
Q Consensus 2231 G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~ 2310 (2389)
+..+..++.|+.++.||..+|+.+-.... . . .. .+..+|+++..++.||.|..+|..+|. .
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--------~---~-~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~-----~ 301 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA--------S---S-YQ--GPAVDDNRLYVTDADGVVVALDRRSGS-----E 301 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc--------C---C-cc--CceEeCCEEEEECCCCeEEEEECCCCc-----E
Confidence 45677788999999999999987765421 0 1 11 122357778888899999999999873 2
Q ss_pred ceeeeecCCC-eeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEE
Q 000080 2311 MESCLCFSSH-AMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYD 2370 (2389)
Q Consensus 2311 l~tl~gHs~~-V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~ 2370 (2389)
+.......+. ..+.+. .|..|.++ +.|+.|.++|. .+++.+.++.-|...+.
T Consensus 302 ~W~~~~~~~~~~ssp~i---~g~~l~~~---~~~G~l~~~d~--~tG~~~~~~~~~~~~~~ 354 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAV---VGGYLVVG---DFEGYLHWLSR--EDGSFVARLKTDGSGIA 354 (377)
T ss_pred EEccccccCCccccCEE---ECCEEEEE---eCCCEEEEEEC--CCCCEEEEEEcCCCccc
Confidence 2222111111 112222 24566654 48899999997 56888888876665443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=88.90 E-value=2.3 Score=58.33 Aligned_cols=129 Identities=11% Similarity=0.126 Sum_probs=86.6
Q ss_pred EEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-------CCEEEEEeCCCcEEEeeCCCCCccCc
Q 000080 2236 VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-------GHRFASAALDGTVCTWQLEVGGRSNV 2308 (2389)
Q Consensus 2236 SGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-------G~~LASgS~DgTVkLWDl~tggrs~~ 2308 (2389)
.......|+--|+.+|+-+..+.+ |. ...|. .|.|+ ...-..|=.++.+..||.+..+.
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~---~~------~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--- 564 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKV---HD------DIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--- 564 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeec---CC------Cccee--EecccccccccCCCceEEEECCCceEEeccCCCCC---
Confidence 334677899999999999999863 21 12244 44443 22345567788999999997541
Q ss_pred ccceeeeecC----CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2309 RPMESCLCFS----SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2309 k~l~tl~gHs----~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+.+. -+.|. ..-.++|-.. +|. ||.| |.+|-|||+|-+ ..+.-..|.|--.+|..|..+.+|+|+|--
T Consensus 565 k~v~-~~~k~Y~~~~~Fs~~aTt~-~G~-iavg---s~~G~IRLyd~~--g~~AKT~lp~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 565 KLVD-SQSKQYSSKNNFSCFATTE-DGY-IAVG---SNKGDIRLYDRL--GKRAKTALPGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred ceee-ccccccccCCCceEEEecC-Cce-EEEE---eCCCcEEeeccc--chhhhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence 2221 12222 2334566665 665 5554 699999999953 123345677878999999999999999999
Q ss_pred cc
Q 000080 2385 CR 2386 (2389)
Q Consensus 2385 ~~ 2386 (2389)
|+
T Consensus 637 c~ 638 (794)
T PF08553_consen 637 CK 638 (794)
T ss_pred ec
Confidence 96
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.82 Score=56.75 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=66.9
Q ss_pred cCCCCeEEEE---------eCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2228 HPLRPFFLVG---------SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2228 sPdG~~LASG---------S~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
||||++++-. |..+.+.++|+.+++...... . ...+....+||||+.+|-... +-|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---~--------~~~~~~~~~sP~g~~~~~v~~-~nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---P--------PPKLQDAKWSPDGKYIAFVRD-NNLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----E--------ETTBSEEEE-SSSTEEEEEET-TEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---C--------ccccccceeecCCCeeEEEec-CceEEE
Confidence 6888877662 345789999999887554321 0 256889999999999999975 779999
Q ss_pred eCCCCCccCcccceeeeec----------------CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2299 QLEVGGRSNVRPMESCLCF----------------SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gH----------------s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
++.++. ..-.|..|- -+.-..+-||| ||+.||..- -+++.|+.+.+
T Consensus 69 ~~~~~~----~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~--~d~~~v~~~~~ 130 (353)
T PF00930_consen 69 DLATGQ----ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLR--FDEREVPEYPL 130 (353)
T ss_dssp SSTTSE----EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEE--EE-TTS-EEEE
T ss_pred ECCCCC----eEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEE--ECCcCCceEEe
Confidence 887652 111122220 01124577999 999999875 36777777765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.35 E-value=0.3 Score=65.51 Aligned_cols=133 Identities=14% Similarity=0.194 Sum_probs=81.8
Q ss_pred EEEEEEcC---CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEE-----------ECCCCCEEE
Q 000080 2222 TRAFSSHP---LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQ-----------FDHYGHRFA 2287 (2389)
Q Consensus 2222 VrsVAFsP---dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVa-----------FSPDG~~LA 2287 (2389)
++-|.|.| +.-++-.|-.|++|+|-++.+... .-++ +|..+|..++ .||||+.||
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r----------sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a 251 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR----------SHSQRVTDMAFFAEGVLKLASLSPDGTVFA 251 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHH----------hcCCCcccHHHHhhchhhheeeCCCCcEEE
Confidence 35556655 456777888999999988864432 2222 2445555543 589999999
Q ss_pred EEeCCCcEEEeeCCCCCccCcccceeee-----------ecCCC--eeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCC
Q 000080 2288 SAALDGTVCTWQLEVGGRSNVRPMESCL-----------CFSSH--AMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP 2354 (2389)
Q Consensus 2288 SgS~DgTVkLWDl~tggrs~~k~l~tl~-----------gHs~~--V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~ 2354 (2389)
.++.||.|+.|++.-.|+-.++++..+. ||... +.++.|.. ++.++. -.++-+++|.. .
T Consensus 252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~----~~Ittt--d~nre~k~w~~--a 323 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWV----LRITTT--DVNREEKFWAE--A 323 (1283)
T ss_pred EeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeE----EEEecc--cCCcceeEeec--c
Confidence 9999999999998543321222222222 33322 22333332 444532 36677999997 4
Q ss_pred CCCceEEEEeecCcEEEEeec
Q 000080 2355 PTSSRASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2355 tg~~v~sL~GH~~~V~svA~~ 2375 (2389)
.-+|+ |.--.+.|..|+|+
T Consensus 324 ~w~Cl--l~~~~d~v~iV~p~ 342 (1283)
T KOG1916|consen 324 PWQCL--LDKLIDGVQIVGPH 342 (1283)
T ss_pred chhhh--hhhcccceEeecCC
Confidence 55665 44455678888865
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=87.80 E-value=3.9 Score=46.39 Aligned_cols=82 Identities=20% Similarity=0.383 Sum_probs=51.4
Q ss_pred eEEEEcCCCCCCCcEEEecCCeEEEE---eeC-------CC---CCCCCccceeeEEe-------------c--------
Q 000080 98 TSISWSPETPSIGQLAAASENCIFVF---AHD-------SA---SSKGSFCWSQNAIL-------------V-------- 143 (2389)
Q Consensus 98 k~VaWSPd~~~~GeIaASyDntIRVw---~~d-------~~---~~kgd~~W~~~~tL-------------~-------- 143 (2389)
-+++||+| |+||+..++.|-|. .|. .. .......|...... .
T Consensus 8 ~~l~WS~D----g~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 83 (173)
T PF12657_consen 8 NALAWSED----GQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEI 83 (173)
T ss_pred cCeeECCC----CCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccc
Confidence 47999998 89999999999999 433 00 00001112111110 0
Q ss_pred ccceEEEEeecCCCC------eEEEEecc--eEEeecc---CCcEEEEEEe
Q 000080 144 QGTKVEAIEWTGSGD------GIVAGGME--TVLWKKK---NTLWEIAWKF 183 (2389)
Q Consensus 144 hssTV~sIAWSpdG~------rLaSggdD--V~IW~~~---~s~Wecvwt~ 183 (2389)
.++.|.+++|||.|- .||....+ +.||... .+.|..+.-+
T Consensus 84 s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~dv 134 (173)
T PF12657_consen 84 SSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVADV 134 (173)
T ss_pred ccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeeeeh
Confidence 124899999999763 34444444 9999965 6788887654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.65 E-value=2.1 Score=52.55 Aligned_cols=127 Identities=15% Similarity=0.254 Sum_probs=82.6
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc-eee-EecccCCCCCCC-----CCCCCCEEEEEEC-CCC-CEEEEEeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-ATA-TYGVLPAANVPP-----PYALASISALQFD-HYG-HRFASAAL 2291 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk-~l~-Tl~vl~gh~~p~-----~GH~~~V~sVaFS-PDG-~~LASgS~ 2291 (2389)
-|.+|-|.-.|.+||+|--.|.|-+++-.... |-. -|..+++|..-. .--...|..|.+- |.| +.|.-...
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 35899999999999999999999999965443 222 122233443100 0001236667655 444 46777789
Q ss_pred CCcEEEeeCCCC-------------------Cc------------c------Ccccceee-eecCCCeeEEEEecCCCCE
Q 000080 2292 DGTVCTWQLEVG-------------------GR------------S------NVRPMESC-LCFSSHAMDVSYITSSGSV 2333 (2389)
Q Consensus 2292 DgTVkLWDl~tg-------------------gr------------s------~~k~l~tl-~gHs~~V~sVAFSP~DGsl 2333 (2389)
|.|||||-+... |. + ..+|-+-. ..|..+++++.|+. |.+.
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et 186 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKET 186 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chhe
Confidence 999999977532 00 0 00011111 45889999999999 8888
Q ss_pred EEEeecCCCCCeEEEeeCC
Q 000080 2334 IAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2334 LASAG~sS~D~TVrLWD~l 2352 (2389)
+.|| +|=.|-||++-
T Consensus 187 ~lSa----DdLrINLWnl~ 201 (460)
T COG5170 187 LLSA----DDLRINLWNLE 201 (460)
T ss_pred eeec----cceeeeecccc
Confidence 8884 88899999974
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=2.5 Score=56.58 Aligned_cols=102 Identities=9% Similarity=-0.029 Sum_probs=63.0
Q ss_pred eEEEEEEcCCCCeEEEEe------CCC--cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC
Q 000080 2221 STRAFSSHPLRPFFLVGS------SNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS------~Dg--TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D 2292 (2389)
.+.+.+++|||+.+|.-- .|. +|.+++.+ |.. +.+. . | ...+.-.|+|||+.+++.+..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt--~-------g--~~~t~PsWspDG~~lw~v~dg 417 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL--E-------G--HSLTRPSWSLDADAVWVVVDG 417 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee--c-------C--CCCCCceECCCCCceEEEecC
Confidence 347889999999877655 344 45555542 322 2221 1 1 236788999999988888643
Q ss_pred ----------CcEEEe--eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEE
Q 000080 2293 ----------GTVCTW--QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2389)
Q Consensus 2293 ----------gTVkLW--Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrL 2348 (2389)
++=.+| ++..+. . .. ...+.|.++++|| ||.+||.. .++.|.|
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge-----~-~~--~~~g~Issl~wSp-DG~RiA~i----~~g~v~V 472 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASA-----V-AS--RVPGPISELQLSR-DGVRAAMI----IGGKVYL 472 (591)
T ss_pred cceEEEeccCCCceEEEEeccCch-----h-hh--ccCCCcCeEEECC-CCCEEEEE----ECCEEEE
Confidence 222344 444321 1 11 2356799999999 99999975 2455655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.98 E-value=0.78 Score=61.25 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=64.9
Q ss_pred cCCCCcCc-eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe
Q 000080 2212 DPPATVEN-ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2389)
Q Consensus 2212 d~~atv~n-i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS 2290 (2389)
+|.+.+.+ +++.+++|||..-.|++|=.-|.+.+|..++. ...|.- .-|...+.-+.|||||+.+.|+.
T Consensus 51 EPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv~---------~th~a~i~~l~wS~~G~~l~t~d 120 (1416)
T KOG3617|consen 51 EPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTVV---------ETHPAPIQGLDWSHDGTVLMTLD 120 (1416)
T ss_pred CCCcccccceehhhhccChHHHHHhhccccceeEEEecCCc-eeeeec---------cCCCCCceeEEecCCCCeEEEcC
Confidence 35556665 67788999999999999999999999997543 344431 12568899999999999999999
Q ss_pred CCCcEEEeeCCC
Q 000080 2291 LDGTVCTWQLEV 2302 (2389)
Q Consensus 2291 ~DgTVkLWDl~t 2302 (2389)
.=|.|.+|....
T Consensus 121 ~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 121 NPGSVHLWRYDV 132 (1416)
T ss_pred CCceeEEEEeee
Confidence 999999996653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=86.54 E-value=6.8 Score=47.09 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred EEEEEEcCCCCeEEEEe---CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2222 TRAFSSHPLRPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS---~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
+.+.+.+|||+.+|.-. ....++.+.. +....... .+ ..+..-.|+++|...+....+...+++
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g---------~~l~~PS~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TG---------GSLTRPSWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cC---------CccccccccCCCCEEEEEcCCCceEEE
Confidence 47779999999777655 4444555544 43333321 11 357888999999999998989999998
Q ss_pred e-CCCCCccCcccce-eeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2299 Q-LEVGGRSNVRPME-SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2299 D-l~tggrs~~k~l~-tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
. ..+++. .+.. ....-...|.++++|| ||.++|-.-....++.|.+=-+
T Consensus 93 ~~~~~g~~---~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 93 RDSASGTG---EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred EecCCCcc---eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEE
Confidence 5 333321 1111 1111112899999999 9999987532234566666554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.41 E-value=4 Score=54.75 Aligned_cols=144 Identities=17% Similarity=0.057 Sum_probs=72.7
Q ss_pred EEEEEcCCCCeEEEEeCC-CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE---e
Q 000080 2223 RAFSSHPLRPFFLVGSSN-THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT---W 2298 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~D-gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL---W 2298 (2389)
.+-+|+|||..|++.++. ..+++.+-.....+....+ .+..... .....|.++++||||+++|... +|.|.+ =
T Consensus 400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~v-d~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPV-DASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred CCceECCCCCceEEEecCcceEEEeccCCCceEEEEec-cCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 344899999988887654 2344444321112221111 1110000 0124699999999999999887 466665 2
Q ss_pred eCCCCCccCcccceeee-ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe--ecCcEEEEeec
Q 000080 2299 QLEVGGRSNVRPMESCL-CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC--HEGLYDLFLPL 2375 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~-gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G--H~~~V~svA~~ 2375 (2389)
....|.. .+.....+. +-...+.+++|.+ +++++ .+. .+....+|.+.. .|.....+.+ ...++..||-.
T Consensus 477 r~~~G~~-~l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~---~~~~~~v~~v~v-DG~~~~~~~~~n~~~~v~~vaa~ 549 (591)
T PRK13616 477 QTEDGQY-ALTNPREVGPGLGDTAVSLDWRT-GDSLV-VGR---SDPEHPVWYVNL-DGSNSDALPSRNLSAPVVAVAAS 549 (591)
T ss_pred eCCCCce-eecccEEeecccCCccccceEec-CCEEE-EEe---cCCCCceEEEec-CCccccccCCCCccCceEEEecC
Confidence 3222211 011112222 2233467899998 77765 432 334455677521 2222122222 25556666655
Q ss_pred c
Q 000080 2376 K 2376 (2389)
Q Consensus 2376 ~ 2376 (2389)
+
T Consensus 550 ~ 550 (591)
T PRK13616 550 P 550 (591)
T ss_pred C
Confidence 4
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=86.00 E-value=4.3 Score=50.42 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=62.1
Q ss_pred CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcc
Q 000080 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2389)
Q Consensus 2230 dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k 2309 (2389)
++..+..++.||.|..+|..+|+.+-.+..+.+ ..+.+... .|..+..++.||.|.++|..+|+
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~---------~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~----- 341 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKY---------RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS----- 341 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEEEccccccC---------CccccCEE--ECCEEEEEeCCCEEEEEECCCCC-----
Confidence 466777788999999999999987755421111 11122122 47799999999999999999873
Q ss_pred cceeeeecCCCee-EEEEecCCCCEEEEeecCCCCCeEEEe
Q 000080 2310 PMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2389)
Q Consensus 2310 ~l~tl~gHs~~V~-sVAFSP~DGslLASAG~sS~D~TVrLW 2349 (2389)
.+.++.-+...+. +-++. ++++++. +.|++|..+
T Consensus 342 ~~~~~~~~~~~~~~sp~~~--~~~l~v~----~~dG~l~~~ 376 (377)
T TIGR03300 342 FVARLKTDGSGIASPPVVV--GDGLLVQ----TRDGDLYAF 376 (377)
T ss_pred EEEEEEcCCCccccCCEEE--CCEEEEE----eCCceEEEe
Confidence 4445544443332 22333 4455543 378877654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=84.99 E-value=8.9 Score=43.81 Aligned_cols=141 Identities=17% Similarity=0.113 Sum_probs=80.8
Q ss_pred ccccccccccccccCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEE
Q 000080 2199 LGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQ 2278 (2389)
Q Consensus 2199 ~~~d~~~~~~~~~d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVa 2278 (2389)
+.-.+.+.+|.+.- ....... .. ...+++..+.+++.++.|+.||..+|+.+-.+.. ++. .+..
T Consensus 8 ~d~~tG~~~W~~~~-~~~~~~~--~~-~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~-----~~~~------ 71 (238)
T PF13360_consen 8 LDPRTGKELWSYDL-GPGIGGP--VA-TAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGP-----ISGA------ 71 (238)
T ss_dssp EETTTTEEEEEEEC-SSSCSSE--EE-TEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSC-----GGSG------
T ss_pred EECCCCCEEEEEEC-CCCCCCc--cc-eEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccc-----ccce------
Confidence 35556677776621 1112222 11 1333566677779999999999999998877642 221 0111
Q ss_pred ECCCCCEEEEEeCCCcEEEeeCCCCCccCccccee-eeecC---CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCC
Q 000080 2279 FDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMES-CLCFS---SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP 2354 (2389)
Q Consensus 2279 FSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~t-l~gHs---~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~ 2354 (2389)
...++..+..++.|+.|..+|.++|. .+.. ..... ......+... +|..++.+ ..++.|...|. .
T Consensus 72 ~~~~~~~v~v~~~~~~l~~~d~~tG~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~g~l~~~d~--~ 140 (238)
T PF13360_consen 72 PVVDGGRVYVGTSDGSLYALDAKTGK-----VLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVG---TSSGKLVALDP--K 140 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSC-----EEEEEEE-SSCTCSTB--SEEEE-ETTEEEEE---ETCSEEEEEET--T
T ss_pred eeecccccccccceeeeEecccCCcc-----eeeeeccccccccccccccCceE-ecCEEEEE---eccCcEEEEec--C
Confidence 23456677777788999999999973 3333 12111 1112222333 34555544 25788999996 4
Q ss_pred CCCceEEEEeec
Q 000080 2355 PTSSRASITCHE 2366 (2389)
Q Consensus 2355 tg~~v~sL~GH~ 2366 (2389)
+|+.+.....+.
T Consensus 141 tG~~~w~~~~~~ 152 (238)
T PF13360_consen 141 TGKLLWKYPVGE 152 (238)
T ss_dssp TTEEEEEEESST
T ss_pred CCcEEEEeecCC
Confidence 666666665544
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.93 E-value=0.7 Score=61.94 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=88.0
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CC-cEEEeeC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DG-TVCTWQL 2300 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-Dg-TVkLWDl 2300 (2389)
..++|+-+-+.|+.|+..|.|+++++.+|.....+. +|.+.|+-|.-|-||.+..+.|. .. -..||++
T Consensus 1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n----------cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN----------CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred eeEEeecCCceEEeeeccceEEEEEccCcccccccc----------ccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 678999999999999999999999999998665542 46688999999999976655443 33 5789999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEE-EEeec---CcEEEEeecc
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHE---GLYDLFLPLK 2376 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~s-L~GH~---~~V~svA~~~ 2376 (2389)
...+ .+..++. .-..|-|+. .-+.=| -|. ....+-|+|+ +++..+++ |.+-. -.-++..|+|
T Consensus 1175 ~s~~----~~~Hsf~----ed~~vkFsn-~~q~r~-~gt--~~d~a~~YDv--qT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1175 SSTG----GPRHSFD----EDKAVKFSN-SLQFRA-LGT--EADDALLYDV--QTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred cccc----Ccccccc----ccceeehhh-hHHHHH-hcc--cccceEEEec--ccCcHHHHhcCcchhhhhhccccccCC
Confidence 7643 3433332 233577886 322222 232 3345789998 55554555 33211 1113555666
Q ss_pred cchhh
Q 000080 2377 LLNFA 2381 (2389)
Q Consensus 2377 ~~~~~ 2381 (2389)
.-.-+
T Consensus 1241 ~D~LI 1245 (1516)
T KOG1832|consen 1241 CDTLI 1245 (1516)
T ss_pred CcceE
Confidence 54443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.40 E-value=2.4 Score=50.63 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=64.6
Q ss_pred CeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccc
Q 000080 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2389)
Q Consensus 2232 ~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l 2311 (2389)
.-++.|+.||.|++|++.---...... ..+-..-+..|.---++...-+++.||.||.|++.-.. .+
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~--------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-----~~ 137 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRV--------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-----VL 137 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhh--------hcccccceeccccccccceeEEeccCCceeeeccccCc-----ee
Confidence 457889999999999986111111100 01112234445555677789999999999999997642 22
Q ss_pred eeeeecC-CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2312 ESCLCFS-SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2312 ~tl~gHs-~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
...-.|+ -.+.....+. +++.|+.+- -|.|++++.|++
T Consensus 138 g~~g~h~~~~~e~~ivv~-sd~~i~~a~-~S~d~~~k~W~v 176 (238)
T KOG2444|consen 138 GYVGQHNFESGEELIVVG-SDEFLKIAD-TSHDRVLKKWNV 176 (238)
T ss_pred eeeccccCCCcceeEEec-CCceEEeec-cccchhhhhcch
Confidence 2223344 3444555555 667777652 246778888886
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=82.95 E-value=7.1 Score=49.21 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=61.7
Q ss_pred CEEEEEECCCCCEEEEE-eCC----CcEEEeeCCCCCccCcccce-eeeecCCCeeEEEEecCCCCEEEEeecCCC----
Q 000080 2273 SISALQFDHYGHRFASA-ALD----GTVCTWQLEVGGRSNVRPME-SCLCFSSHAMDVSYITSSGSVIAAAGHSSN---- 2342 (2389)
Q Consensus 2273 ~V~sVaFSPDG~~LASg-S~D----gTVkLWDl~tggrs~~k~l~-tl~gHs~~V~sVAFSP~DGslLASAG~sS~---- 2342 (2389)
.+...++||||+++|-+ +.. .+|++.|+++|. .+. .+.. .. ...++|.+ ||+.+.-..+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~-----~l~d~i~~-~~-~~~~~W~~-d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK-----FLPDGIEN-PK-FSSVSWSD-DGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE-----EEEEEEEE-EE-SEEEEECT-TSSEEEEEECSTTTSS-
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc-----CcCCcccc-cc-cceEEEeC-CCCEEEEEEeCcccccc
Confidence 34568999999999854 333 459999999972 222 1111 11 12399999 7777655444332
Q ss_pred ----CCeEEEeeCCCCCCCceEEEEeecCc--EEEEeecccchhhh
Q 000080 2343 ----GINVVVWDTLAPPTSSRASITCHEGL--YDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2343 ----D~TVrLWD~l~~tg~~v~sL~GH~~~--V~svA~~~~~~~~~ 2382 (2389)
...|+.|++-.+..+..-.+++..+. ...+..+++|+|++
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~ 242 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLF 242 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEE
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEE
Confidence 44588888732222223455555544 45888999999876
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.93 E-value=8.8 Score=51.59 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=95.6
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.--++..++.+|+-|++-|.++|++-..|+. +.+.. . |..+.+.....|++....|.|+..|.|.+.++
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~-~-------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKN-E-------GATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhh-hcccc-c-------CccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 445557888999999999999999999765553 33321 1 12255677888999999999999999999999
Q ss_pred CCCCccCcccc-ee--e-eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCC-CCCCc-eEEEEeecCcEEEEee
Q 000080 2301 EVGGRSNVRPM-ES--C-LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA-PPTSS-RASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2301 ~tggrs~~k~l-~t--l-~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~-~tg~~-v~sL~GH~~~V~svA~ 2374 (2389)
+.+. +.+. +. . .-|...|++++|++ ||..+-+| -.-|+|.+=.+.. .-..+ +|.+..-...|.-+..
T Consensus 106 ~~~~---p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysG---D~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 106 NKEL---PRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSG---DSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred hccC---CCcceeeccccccCCceEEEEEecc-cccEEeec---CCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence 8742 1111 11 1 12678899999999 99999985 2456777666532 11122 4555555666666655
Q ss_pred cc
Q 000080 2375 LK 2376 (2389)
Q Consensus 2375 ~~ 2376 (2389)
..
T Consensus 179 ~q 180 (726)
T KOG3621|consen 179 LQ 180 (726)
T ss_pred cc
Confidence 44
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.69 E-value=6.8 Score=50.75 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=74.8
Q ss_pred cceeecCCCCCCeEEEEecCC--cEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEEe--cC
Q 000080 42 STIDWLPDFAGYSWVAYGASS--LLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAA--SE 117 (2389)
Q Consensus 42 ~ai~wlpD~~G~~~vAYasg~--~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaAS--yD 117 (2389)
....|+||...+..+.+..+. .+++..+..+... .+ ..++++ .-.-+|||| +..||-+ -|
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--~i------~~~~g~-----~~~P~fspD---G~~l~f~~~rd 259 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--VI------LNFNGN-----NGAPAFSPD---GSKLAFSSSRD 259 (425)
T ss_pred eccccCcCCCceEEEEEecCCCceEEEEeccCCccc--ee------eccCCc-----cCCccCCCC---CCEEEEEECCC
Confidence 346789983333233333444 3555544332211 11 113343 335689999 6666633 46
Q ss_pred CeEEEEeeCCCCCCCCccceeeEEecc-cceEEEEeecCCCCeEEEEecc---eEEeec--cCCcEEEEEEeeccccceE
Q 000080 118 NCIFVFAHDSASSKGSFCWSQNAILVQ-GTKVEAIEWTGSGDGIVAGGME---TVLWKK--KNTLWEIAWKFKENYPQNL 191 (2389)
Q Consensus 118 ntIRVw~~d~~~~kgd~~W~~~~tL~h-ssTV~sIAWSpdG~rLaSggdD---V~IW~~--~~s~Wecvwt~~~~~~~~i 191 (2389)
+...||--|- .... ...|++ .+.=..=+|+|||++|+-.+|. -+||.. ..+.=+.+. ..+....
T Consensus 260 g~~~iy~~dl--~~~~-----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT-~~~~~~~-- 329 (425)
T COG0823 260 GSPDIYLMDL--DGKN-----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT-FSGGGNS-- 329 (425)
T ss_pred CCccEEEEcC--CCCc-----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee-ccCCCCc--
Confidence 8888887761 1111 111443 2222367899999999988885 556653 222223331 2222211
Q ss_pred EEEeecCCCc-eEeeec
Q 000080 192 VSATWSIEGP-SATAAS 207 (2389)
Q Consensus 192 vsvaWSpdG~-fATag~ 207 (2389)
.-.|||||. +|-++.
T Consensus 330 -~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 330 -NPVWSPDGDKIVFESS 345 (425)
T ss_pred -CccCCCCCCEEEEEec
Confidence 348999999 777763
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=82.47 E-value=7 Score=44.65 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=61.8
Q ss_pred CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecC
Q 000080 2239 SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFS 2318 (2389)
Q Consensus 2239 ~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs 2318 (2389)
+||+|+.||..+|+.+-.+.. .. +. ...... ..++++.+.+++.++.|..||..+|. .+.+... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~-~~------~~-~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~-----~~W~~~~-~ 65 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDL-GP------GI-GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGK-----VLWRFDL-P 65 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEEC-SS------SC-SSEEET-EEEETTEEEEEETTSEEEEEETTTSE-----EEEEEEC-S
T ss_pred CCCEEEEEECCCCCEEEEEEC-CC------CC-CCccce-EEEeCCEEEEEcCCCEEEEEECCCCC-----EEEEeec-c
Confidence 589999999999999877641 10 01 112211 44466677777999999999999972 3333332 2
Q ss_pred CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE
Q 000080 2319 SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2389)
Q Consensus 2319 ~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL 2362 (2389)
..+....... ++.+++. +.|+.|..+|+ .+|+.+...
T Consensus 66 ~~~~~~~~~~-~~~v~v~----~~~~~l~~~d~--~tG~~~W~~ 102 (238)
T PF13360_consen 66 GPISGAPVVD-GGRVYVG----TSDGSLYALDA--KTGKVLWSI 102 (238)
T ss_dssp SCGGSGEEEE-TTEEEEE----ETTSEEEEEET--TTSCEEEEE
T ss_pred ccccceeeec-ccccccc----cceeeeEeccc--CCcceeeee
Confidence 2211111222 4455443 25678999996 577777663
|
... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.22 E-value=27 Score=44.46 Aligned_cols=140 Identities=15% Similarity=0.116 Sum_probs=86.5
Q ss_pred EEEEEcCCCCe-EEEEe--CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEE-eCCCcEEEe
Q 000080 2223 RAFSSHPLRPF-FLVGS--SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTW 2298 (2389)
Q Consensus 2223 rsVAFsPdG~~-LASGS--~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASg-S~DgTVkLW 2298 (2389)
..++++|+++. .++-+ .+++|.+-|-.+++.+.+.. . |- .. ..++|+|+|+++..+ +.+++|.+-
T Consensus 119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~---v------G~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP---V------GN-TP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe---c------CC-Cc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 56799999964 44444 37999999988888877742 1 11 22 889999999855554 589999999
Q ss_pred eCCCCCccCcccce-----eeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEE-EEeecCcEEEE
Q 000080 2299 QLEVGGRSNVRPME-----SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGLYDLF 2372 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~-----tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~s-L~GH~~~V~sv 2372 (2389)
|.++.. ..+ ...-+ ..-..+++.| ||+.+-.+-..+.|++|-.=|+ .++..... +..-.++-..+
T Consensus 188 ~~~~~~-----v~~~~~~~~~~~~-~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~--~~~~v~~~~~~~~~~~~~~v 258 (381)
T COG3391 188 DTSGNS-----VVRGSVGSLVGVG-TGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDT--ATGNVTATDLPVGSGAPRGV 258 (381)
T ss_pred eCCCcc-----eeccccccccccC-CCCceEEECC-CCCEEEEEeccCCCceEEEEeC--CCceEEEeccccccCCCCce
Confidence 976531 111 11112 2335688999 8884443322334467888886 23333222 22112134467
Q ss_pred eecccchhhh
Q 000080 2373 LPLKLLNFAL 2382 (2389)
Q Consensus 2373 A~~~~~~~~~ 2382 (2389)
+..|+|.++-
T Consensus 259 ~~~p~g~~~y 268 (381)
T COG3391 259 AVDPAGKAAY 268 (381)
T ss_pred eECCCCCEEE
Confidence 8888887763
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=81.03 E-value=11 Score=50.93 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=37.5
Q ss_pred CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
+++|.+.|.++..+.. ..+...-.=......|+++| ||+++..+| -.+.+|-|-|+
T Consensus 295 gn~V~VID~~t~~~~~-~~v~~yIPVGKsPHGV~vSP-DGkylyVan--klS~tVSVIDv 350 (635)
T PRK02888 295 GSKVPVVDGRKAANAG-SALTRYVPVPKNPHGVNTSP-DGKYFIANG--KLSPTVTVIDV 350 (635)
T ss_pred CCEEEEEECCccccCC-cceEEEEECCCCccceEECC-CCCEEEEeC--CCCCcEEEEEC
Confidence 4679999988710000 11222222345567799999 999988876 57889999998
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=80.54 E-value=9.5 Score=51.54 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHhCC-hhHHHHHHhc
Q 000080 1386 GDYWLTSLLEWELGN-YSQSFLTMLG 1410 (2389)
Q Consensus 1386 gDrwL~S~a~W~L~~-~~~Av~~Ll~ 1410 (2389)
..||.-..+|.+|++ ...||+++++
T Consensus 465 k~Ry~~AAaFFLLag~l~dAv~V~~~ 490 (631)
T PF12234_consen 465 KHRYEYAAAFFLLAGSLKDAVNVCLR 490 (631)
T ss_pred cccHHHHHHHHHhcccHHHHHHHHHH
Confidence 456666666666654 5566666663
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=80.20 E-value=35 Score=46.89 Aligned_cols=117 Identities=9% Similarity=-0.002 Sum_probs=70.9
Q ss_pred eeEEEEEEcCCCCeEEE-----EeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC--
Q 000080 2220 ISTRAFSSHPLRPFFLV-----GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-- 2292 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LAS-----GS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D-- 2292 (2389)
..+..+.++|||++||- |++..+|++-|+.+|+.+.+. + . +.-..++|++||+.|.-+..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--i-------~---~~~~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL--L-------D---NVEPSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc--c-------c---CcceEEEEeeCCCEEEEEEecCC
Confidence 45577899999998775 445567899999888643321 1 0 111569999999877766553
Q ss_pred ----CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2293 ----GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2293 ----gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
..|.+|++.++. +....+.. +......-..+.+.||+.+.....+..++.+.+++.
T Consensus 195 ~~~~~~v~~h~lgt~~-~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 195 TLLPYQVWRHTIGTPA-SQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCCEEEEEECCCCh-hHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 357778888762 11122322 222222312233337776655544556778999995
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.16 E-value=5.2 Score=54.76 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=79.5
Q ss_pred CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcc
Q 000080 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2389)
Q Consensus 2230 dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k 2309 (2389)
++..++-|+.-..+--.|+.+++..++..+ . .+.|.-+ -.+++.|-+|+.-|+|-|=|.++- +
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~---------a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~-----~ 208 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-S---------ASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSF-----E 208 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-c---------CCceEEE--EecCcEEEeecccceEEeecCCcC-----c
Confidence 455677788777888899999998887643 1 1224433 357889999999999999999874 6
Q ss_pred cceeeeecCCCeeEEEEecCCCCEEEEeecCC------CCCeEEEeeC
Q 000080 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSS------NGINVVVWDT 2351 (2389)
Q Consensus 2310 ~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS------~D~TVrLWD~ 2351 (2389)
++.++.+|++.+.++.. .|++|+|.|+|. .|.-|++||+
T Consensus 209 ~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 209 TIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred eeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhh
Confidence 88999999999986554 468999999865 4667999996
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 96.5 bits (239), Expect = 9e-20
Identities = 114/760 (15%), Positives = 210/760 (27%), Gaps = 234/760 (30%)
Query: 1104 YNMDLDASNSSSSTKSELSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASV 1163
++MD + K LS F + + ++ V D K IL+ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-SILS------------KEEI 51
Query: 1164 YENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP 1223
+ L F L+S +E V + +L
Sbjct: 52 DHIIMSKDA----VSGTLRL-----FWTLLSKQEEMV--------------QKFVEEVL- 87
Query: 1224 NEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGL 1283
+ + + R + Y++++D LY N QV A
Sbjct: 88 -RINYK---------FLMSPIKTEQRQPSMMTRMYIEQRDR-----LY---NDNQVFAKY 129
Query: 1284 FKISKDEKDKPLVGFLSRNFQEEKNKAAALKNA-YVLLGRHQLELAIAFFLLGGDAASAV 1342
+S+ + L + L+ A VL+ G S
Sbjct: 130 N-VSRLQPYLKL-----------RQALLELRPAKNVLI--D------------GVLGSGK 163
Query: 1343 TVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYS 1402
T +AL +C + K I +WL L N +
Sbjct: 164 TW---------VALDVCL---------SYKVQCKM--DFKI----FWLN------LKNCN 193
Query: 1403 QSFLTMLGFQSTAVINNFALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRW 1462
+ Q + + N + D S + + + + +R
Sbjct: 194 SPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR------------- 236
Query: 1463 AALMRATALNRCGLPL---------EALD--C---LSSSPSTIGGTDQESVLNIGH---S 1505
L+++ C L L A + C L++ + TD S H
Sbjct: 237 --LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAATTTHISLD 292
Query: 1506 HILPEILKPSAATGSSNWL-LRDVALHLESCAKLDLSLQYFSKLIRDHPS----WPDLGF 1560
H + + +L R L E L ++ IRD + W +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 1561 GRASKCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKILSLLCNNGLLFI 1620
+ + L +K++ L+ F S+ + +LSL+ +
Sbjct: 353 DKLTTIIESS----LNVLEPAEYRKMFDRLSVFP-----PSAHIPTILLSLIWFD----- 398
Query: 1621 GYDLLHGYICQGKSQEKSSDTVDGL---SLYFCQHKPLLKAAEDISIFLSRFIAATSITC 1677
+ V+ L SL Q K + I + L
Sbjct: 399 ------------VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV-------KL 439
Query: 1678 SHLKSTNSENVRHHEVRSRWSN-------AQGYYFQSIIFSLWSLRAAMRTFSGSFPEEL 1730
+ + + V H+ + + + Y++ I L ++ R F
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRM-- 495
Query: 1731 ITPLFLLDLYEYYVHFASAWLQR----------DSKGLLQVLQPVLITY----TNGHTPY 1776
+FL D +L++ S +L LQ L Y + Y
Sbjct: 496 ---VFL-DF---------RFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKY 541
Query: 1777 EVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDE 1816
E +N + F + E L + D L+++ +DE
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL----LRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 2e-11
Identities = 86/638 (13%), Positives = 175/638 (27%), Gaps = 182/638 (28%)
Query: 1568 MDFEI----HQYEKLVQNFQQKL------YTALAFFEQRFSM----------DSSSLIAK 1607
MDFE +QY+ ++ F+ + S D+ S +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 1608 ILSLLCNNG----------LLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLK 1657
+ L + +L I Y L I + + ++ S T +Y Q L
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTR----MYIEQRDRLYN 121
Query: 1658 AAEDISIF----LSRFIAATSITCSHLKSTNSEN-------------------VRHHEVR 1694
D +F +SR + L ++V+
Sbjct: 122 ---DNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 1695 SR------WSNAQGYYFQ--SIIFSLWSLRAAMRTFSGSFPEELIT-PLFLLDLYEYYVH 1745
+ W N +++ L L + S + L + +
Sbjct: 178 CKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 1746 FASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFHQSAELL-TRNTSIDNMV 1804
+ + LL VL V + F LL TR + + +
Sbjct: 237 LLKSKPYENC--LL-VLLNVQ------------NAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 1805 GDLQVSKFVDDERSTDL------------MNSIPEDERWQ----------IMGACL---- 1838
+ D S L ++ P+D + I+ +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 1839 -----WQHMSRFMKHKLNSMSVK-LDENHSSRLL--------GGHISS------WTSSLT 1878
W+H++ + S+ L+ ++ HI + W +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 1879 N-PE-------SASIGLKEQMRLLTLFLAQLLKSALLHIS---SHHVKQLAFFLRYKVEN 1927
+ S+ +++Q + T+ + + + + + H + Y +
Sbjct: 402 SDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---HYNIPK 457
Query: 1928 GFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDEAAI-SELLWDVCSDPSIIHE 1986
FD P Y H I + I + + + + D
Sbjct: 458 TFD-----SDDLIPPYLDQYFYSH---IGHHLKNIEHPERMTLFRMVFLDF--------- 500
Query: 1987 GFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKD- 2045
F ++K+ S + + + K I ++L + + D
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---------LDF 551
Query: 2046 LFRNSRTSPRSWHKD----ANMA-NEVIPFQAPKEICK 2078
L + S + D A MA +E I +A K++ +
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 1e-07
Identities = 88/651 (13%), Positives = 184/651 (28%), Gaps = 177/651 (27%)
Query: 1398 LGNYSQSFLTMLGFQSTAVINNFALSSNSVAFM----DPSIGLY----CLMLANKNSMRN 1449
L + +F+ + + LS + + D G L+ + ++
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 1450 AIGE---KNAA-ILGRWAALMRATALNRCGLPLEALDCLSSSPSTIGG---TDQESVLNI 1502
+ E N ++ R ++ + +E D L + + + L +
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 1503 GHSHILPEILKPSAATGSSNWLLRDVALH-LESCAKLDLSLQYFSKLIRDHPSWPDLGFG 1561
+L L+P+ ++V + + K ++L + +
Sbjct: 141 -RQALL--ELRPA----------KNVLIDGVLGSGKTWVALD----VCLSYKV------- 176
Query: 1562 RASKCFMDFEIH-------QYEKLVQNFQQKLY-------TALAFFEQRFSMDSSSLIAK 1607
+C MDF+I + V QKL T+ + + S+ A+
Sbjct: 177 ---QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 1608 ILSLLCN----NGLLFIGYDLLHGYI-------CQGKSQEKSSDTVDGLSLYFCQHKPL- 1655
+ LL + N LL + ++ + C+ + D LS H L
Sbjct: 234 LRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 1656 -----LKAAEDISIFLSRFIAATSITCSHL----KSTN-------SENVRHHEVRSRWSN 1699
L E S+ L L +TN +E++R + W N
Sbjct: 293 HHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNPRRLSIIAESIRDG--LATWDN 346
Query: 1700 AQGYYFQSIIFSLWSLRAAMRTFSGSFPEELITPLFLLDLYEYYVHFASAWLQRDSKGLL 1759
+ + L + + + L + + + + +
Sbjct: 347 WKHV-------NCDKLTTIIESS--------LNVLEPAEYRKMFDRLSV--FPPSAHIPT 389
Query: 1760 QVLQPVLITYTNGHTPYEVDMNNLKTFFHQSAELLTRN-----TSIDNMVGDLQVSKFVD 1814
+L + + + M + S L+ + SI + + V
Sbjct: 390 ILLS---LIWFDV--IKSDVMVVVNKLHKYS--LVEKQPKESTISIP----SIYLELKVK 438
Query: 1815 DERSTDLMNSIPEDERWQIMGACLWQHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWT 1874
E L SI + H + + + + + +G H
Sbjct: 439 LENEYALHRSIVD-------------HYNIPKTFDSDDLIPPYLDQYFYSHIGHH----- 480
Query: 1875 SSLTNPESASIGLKEQMRLLTL---FLAQLLKSA------------LL--------HISS 1911
L N E R++ L FL Q ++ L +I
Sbjct: 481 --LKNIEHP--ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 1912 HH------VKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIV 1956
+ V + FL EN L+ A ++ +++ ++ V
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 3e-06
Identities = 87/582 (14%), Positives = 177/582 (30%), Gaps = 177/582 (30%)
Query: 141 ILVQGTKVEAIE---WT--GSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLVSAT 195
I++ V WT + +V +E VL + N + + K Q
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL--RINYKF-LMSPIKTEQRQ------ 104
Query: 196 WSIEGPSA-TAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPST 254
PS T + Q D L +D + + K + QP ++
Sbjct: 105 -----PSMMTRMYIEQRDRL------------YNDNQV-FAKYNVSRLQPYLKLRQALLE 146
Query: 255 RRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMD-SGKTRKVAKDTNDHK------------ 301
R + VL+ DG + SGKT +K
Sbjct: 147 LRPAKN--------VLI----DG-------VLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 302 TIRRSFCVGAIIEINQAL------NGALGMDIVITWAKEIRCMFETGEGA-NHFISTGVY 354
++ ++E+ Q L N D + I+ + + + + Y
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIHSIQAELRRLLKSKPY 243
Query: 355 EHGGTGKCEWLVGYGPGSLVTL---W--------AIHC--L---DDISPLRFPRVTLWKK 398
E+ L+ L + C L F ++
Sbjct: 244 EN---------------CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF--LSAATT 286
Query: 399 QNLELEHPHNSGFSGFQGQSLLNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLL--HAQ 456
++ L+H H+ + + +SLL K + R LP + S++ +
Sbjct: 287 THISLDH-HSMTLTPDEVKSLLLKYLDCR--PQDLPREVLTTNPRRL-SIIAESIRDGLA 342
Query: 457 RSGDVEDVSSDKSSTGQILSCSASRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLL 516
+ + V+ DK +T I+ S + +L + +++V F + + + L
Sbjct: 343 TWDNWKHVNCDKLTT--IIESSLN-VLEPAEYRKMFDRLSV------FPPSAHIPTILLS 393
Query: 517 LFWSLSTISNCISDLPTLMPSWKLCGK-LRTRKSCSNYTSLRWAPSL-------LDEDMV 568
L W + I ++ + KL L ++ + S+ PS+ L+ +
Sbjct: 394 LIW-----FDVIKSDVMVVVN-KLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYA 444
Query: 569 LLMGHVGGIDCFIVK-------ISQTEVDDIVCHYVCTIPFTGHGHYEDGPANIFSVPLP 621
L H +D + + + +D ++ GH H L
Sbjct: 445 L---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI------GH-H------------LK 482
Query: 622 SCN--DKTVMYNKFML-LGVWLKG---LESLSWEITFHSFDL 657
+ ++ ++ L +L+ +S +W + +
Sbjct: 483 NIEHPERMTLFRMVFLDFR-FLEQKIRHDSTAWNASGSILNT 523
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-05
Identities = 77/518 (14%), Positives = 155/518 (29%), Gaps = 152/518 (29%)
Query: 683 CGKKYFIGVNPCSSQFPEPHTRN---WVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPYT 739
GK + ++ C S + W+ P ++ M QKL+Y DP
Sbjct: 161 SGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 740 MATGYSD-GSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAAS 798
+ S++ L L + + L +
Sbjct: 220 SSNIKLRIHSIQAELRRL---------------LKSKPYENCLLVLLN------------ 252
Query: 799 HSNAVSNVRIWESV---C---VTELGSFVLEDTLSFDTNIVAVNW----LTLENGQSLLG 848
V N + W + C +T V + + T ++++ LT + +SLL
Sbjct: 253 ----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 849 VCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAAHDFTWGRRAIAIVVHQS 908
L + L + L +P R ++I+
Sbjct: 309 KYLDCRPQ-----------------DLPRE---VLTTNP-----------RRLSIIA--- 334
Query: 909 YLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAGDQRGD 968
+ D DN+ +N + ++TI + + R
Sbjct: 335 --------ESIRDGLAT--------WDNW----KHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 969 YES----APSVNIDMKNDHLVASDQLKCGGAILGSWS------MLEIAEKL-RGSLPVYH 1017
++ PS +I + S ++ W ++ + KL + SL
Sbjct: 375 FDRLSVFPPSAHIPTI----LLS--------LI--WFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 1018 PKALFLNIYSGNWKRAYVSVRHLVENLPS-------NYPSEKRYCYTKSSHIVPQILLST 1070
PK ++I S Y+ ++ +EN + +Y K + S ++P L
Sbjct: 421 PKESTISIPSI-----YLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLDQY 472
Query: 1071 YFEGL---LSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFVEL 1127
++ + L ++ + + +F + D A N+S S + L
Sbjct: 473 FYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--- 527
Query: 1128 LQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYE 1165
Y+ + D + V +L+ F K ++
Sbjct: 528 --KFYK-PYICDNDPKYERLVNAILD-FLPKIEENLIC 561
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 9e-05
Identities = 78/527 (14%), Positives = 159/527 (30%), Gaps = 163/527 (30%)
Query: 480 SRILSIEGH--TGK-ILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMP 536
++ + I+G +GK + + V +++ +D +FW + NC S L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDV---CLSYKVQCKMDFK---IFWL--NLKNCNSPETVLEM 201
Query: 537 SWKLCGKLRTRKS--CSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVC 594
KL ++ + + ++++ + ++ L+ +C +V + + V
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV------LLN-VQ 254
Query: 595 HYVCTIPFTGHGHYEDGPANI---FSVPLPSC------NDKTVM------YNKFMLLGVW 639
+ A F++ SC K V + L
Sbjct: 255 N-----------------AKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 640 LKGL---ESLS----WEITFHSFDLSESCCGCIDDNNTVKCSMCKFETTFCGKKYFIGVN 692
L E S + + DL N + S+ + I
Sbjct: 295 SMTLTPDEVKSLLLKY-LDCRPQDLPREVLTT----NPRRLSI-------IAE--SIRDG 340
Query: 693 PCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDN----DPCSKIPPYTMATGYSDGS 748
+ + + +T+ N L P + + ++D P + IP ++
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS------- 393
Query: 749 LRLWRSELGGSSTSCMPWELVGM----LVAHQGPVSAISLTDGGRKI---ATVSAASHSN 801
+W S + + + LV Q S IS+ ++ A H +
Sbjct: 394 -LIW----FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 802 AVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQSLLGVCLQNELKVYAQR 861
V + I ++ +L D + S +G +
Sbjct: 449 IVDHYNIPKTFDSDDL-IPPYLDQYFY----------------SHIG---------H--- 479
Query: 862 HYGGQILLDTKNSLKMQNWFCLAFSPTFAAHDFTWGRRAIAIVVHQSY------------ 909
H L + ++ +M F F DF + + I H S
Sbjct: 480 H-----LKNIEHPERMT-----LFRMVFL--DFRFLEQKI---RHDSTAWNASGSILNTL 524
Query: 910 --LSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFT 954
L Y ++ D K++ N+ I +F I EN++ + +T
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNA---ILDFL---PKIEENLICSKYT 565
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-04
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 739 TMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAAS 798
+ATG +G +R+W G SC P + H G V+ + + + + +
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--- 1197
Query: 799 HSNAVSNVRIW 809
++ W
Sbjct: 1198 -----GYLKWW 1203
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 17/140 (12%)
Query: 2237 GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYAL----ASISALQFDHYGH-RFASAAL 2291
+ ++ + ++++ K + P+ P L L ++ + SA+
Sbjct: 147 KTPSSDVLVFDYTKHPSKPE----PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202
Query: 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAM---DVSYITSSGSVIAAAGHSSNGINVVV 2348
D T+C W + + + R +++ F+ H DV++ S+ + +++
Sbjct: 203 DHTICLWDINATPKEH-RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ---KLMI 258
Query: 2349 WDTLAPPTSS-RASITCHEG 2367
WDT TS ++ H
Sbjct: 259 WDTRNNNTSKPSHTVDAHTA 278
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2389 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.92 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.89 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.88 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.87 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.87 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.87 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.86 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.86 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.86 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.86 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.86 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.86 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.86 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.86 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.85 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.85 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.84 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.84 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.83 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.83 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.83 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.83 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.83 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.83 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.82 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.82 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.82 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.82 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.82 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.81 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.81 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.81 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.81 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.81 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.81 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.81 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.81 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.8 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.8 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.8 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.8 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.79 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.79 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.79 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.79 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.79 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.79 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.78 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.78 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.78 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.78 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.78 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.77 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.77 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.77 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.76 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.76 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.76 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.76 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.76 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.76 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.76 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.75 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.75 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.75 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.75 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.75 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.75 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.75 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.75 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.75 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.74 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.74 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.74 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.74 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.74 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.74 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.74 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.74 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.74 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.73 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.73 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.73 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.73 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.73 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.73 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.72 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.72 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.71 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.7 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.7 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.7 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.7 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.7 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.7 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.7 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.7 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.7 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.7 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.69 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.69 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.69 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.69 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.69 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.69 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.69 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.68 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.68 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.67 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.66 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.66 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.66 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.66 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.65 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.65 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.64 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.63 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.62 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.6 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.6 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.59 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.57 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.52 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.5 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.46 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.46 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.46 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.4 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.36 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.34 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.33 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.33 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.31 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.3 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.26 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.23 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.22 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.22 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.21 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.18 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.16 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.16 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.16 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.15 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.14 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.13 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.13 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.13 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.11 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.1 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.1 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.1 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.09 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.06 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.05 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.03 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.02 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.02 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.0 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.98 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.95 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.94 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.88 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.83 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.82 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.78 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.77 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.72 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.69 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.66 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.63 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.6 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.6 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.53 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.47 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.45 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.45 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.44 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.43 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.4 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.37 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.35 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.34 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.3 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.3 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.27 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.25 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.23 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.21 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.16 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.14 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.09 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.97 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.97 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.96 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.94 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.94 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.93 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.88 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.88 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.77 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.76 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.74 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.73 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.63 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.6 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.6 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.49 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.45 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.45 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.41 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.32 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.21 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.21 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 96.77 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 96.65 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 96.58 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 96.49 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.47 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 96.08 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.08 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.06 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.01 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 95.92 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 95.85 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 95.77 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 95.29 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 94.85 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.83 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 94.77 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 94.19 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 94.07 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 93.81 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 93.8 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 93.69 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 93.54 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 93.54 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 93.53 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 93.48 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 93.33 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 92.47 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 92.39 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 92.27 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 91.8 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 91.76 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 90.35 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 90.33 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 89.86 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 89.38 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 88.89 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 88.73 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 88.64 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 88.5 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 87.96 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 87.87 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 87.12 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 87.1 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 86.99 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 86.76 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 86.28 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 86.06 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 85.99 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 85.92 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 85.57 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 85.49 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 85.29 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 85.24 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 84.7 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 83.86 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 83.47 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 83.3 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 83.28 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 83.16 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 82.95 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 82.67 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 81.33 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 81.25 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 81.18 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 80.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 80.96 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-20 Score=230.81 Aligned_cols=204 Identities=16% Similarity=0.198 Sum_probs=149.0
Q ss_pred ccccccccCCCCCCCccee---ecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEc
Q 000080 27 FLRSEFIPTAPTRSTSTID---WLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWS 103 (2389)
Q Consensus 27 ~~~~~~ip~ap~~~~~ai~---wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWS 103 (2389)
+.+..++||.|.+.|+... |+|| | ..+||+++..+.+..+.+ + +.. .++.+|.+ .|++|+||
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~~~spd--g-~~l~~~~~~~v~l~~~~~---~-~~~------~~~~~h~~--~v~~~~~s 68 (611)
T 1nr0_A 4 FSQTALFPSLPRTARGTAVVLGNTPA--G-DKIQYCNGTSVYTVPVGS---L-TDT------EIYTEHSH--QTTVAKTS 68 (611)
T ss_dssp CEEEEEECCCCCCCTTCCCCCEECTT--S-SEEEEEETTEEEEEETTC---S-SCC------EEECCCSS--CEEEEEEC
T ss_pred cccccEECCCCCcccCceeEEeeCCC--C-CEEEeCCCCEEEEecCCC---c-ccC------eEecCCCC--ceEEEEEC
Confidence 3557899999999988654 7898 8 499999987555544322 2 223 67788877 89999999
Q ss_pred CCCCCCCcEEE-ecCCeEEEEeeCCCCCCCCccceeeEEe-cccceEEEEeecCCCCeEEEEecc------eEEeeccCC
Q 000080 104 PETPSIGQLAA-ASENCIFVFAHDSASSKGSFCWSQNAIL-VQGTKVEAIEWTGSGDGIVAGGME------TVLWKKKNT 175 (2389)
Q Consensus 104 Pd~~~~GeIaA-SyDntIRVw~~d~~~~kgd~~W~~~~tL-~hssTV~sIAWSpdG~rLaSggdD------V~IW~~~~s 175 (2389)
|+ +..||+ +.|++||||.... + ...+..++ .|+..|++|+|+|+|++||++|++ +.+|+.+..
T Consensus 69 pd---g~~lasg~~d~~v~lWd~~~----~--~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~ 139 (611)
T 1nr0_A 69 PS---GYYCASGDVHGNVRIWDTTQ----T--THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 139 (611)
T ss_dssp TT---SSEEEEEETTSEEEEEESSS----T--TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred CC---CcEEEEEeCCCCEEEeECCC----C--cceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence 97 444443 4689999998651 1 12233444 378999999999999999988863 778885432
Q ss_pred cEEEEEEeeccccceEEEEeecCCCc--eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccC
Q 000080 176 LWEIAWKFKENYPQNLVSATWSIEGP--SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPS 253 (2389)
Q Consensus 176 ~Wecvwt~~~~~~~~ivsvaWSpdG~--fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps 253 (2389)
. .++. .|...+.+++|+|+|. +|||+.|.. |.+|.. ....+......|...|++|+|+|
T Consensus 140 ~----~~l~-gh~~~v~~v~f~p~~~~~l~s~s~D~~------------v~lwd~-~~~~~~~~l~~H~~~V~~v~fsp- 200 (611)
T 1nr0_A 140 N----GNLT-GQARAMNSVDFKPSRPFRIISGSDDNT------------VAIFEG-PPFKFKSTFGEHTKFVHSVRYNP- 200 (611)
T ss_dssp C----BCCC-CCSSCEEEEEECSSSSCEEEEEETTSC------------EEEEET-TTBEEEEEECCCSSCEEEEEECT-
T ss_pred c----ceec-CCCCCceEEEECCCCCeEEEEEeCCCe------------EEEEEC-CCCeEeeeeccccCceEEEEECC-
Confidence 2 2233 3567788999999985 999998744 445532 22224445678999999999999
Q ss_pred CCCCCCCCCccccCceEEeeecCCeEEEEEee
Q 000080 254 TRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEM 285 (2389)
Q Consensus 254 ~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~ 285 (2389)
||+. |||+|.||+||||+..
T Consensus 201 -------dg~~-----las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 201 -------DGSL-----FASTGGDGTIVLYNGV 220 (611)
T ss_dssp -------TSSE-----EEEEETTSCEEEEETT
T ss_pred -------CCCE-----EEEEECCCcEEEEECC
Confidence 6555 9999999999999954
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-18 Score=208.36 Aligned_cols=192 Identities=19% Similarity=0.332 Sum_probs=145.3
Q ss_pred CCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE
Q 000080 35 TAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA 114 (2389)
Q Consensus 35 ~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA 114 (2389)
.+|+....+++|+|| | .++|.|+.+..|..| +. .+ +.+ +.+.+|.. .|++++|||| +..||+
T Consensus 13 ~GH~~~V~~~a~spd--g-~~las~~~d~~v~iW--d~-~~-~~~------~~l~gh~~--~V~~l~fspd---g~~las 74 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPD--G-QTIASASDDKTVKLW--NR-NG-QLL------QTLTGHSS--SVWGVAFSPD---GQTIAS 74 (577)
T ss_dssp CCCSSCEEEEEECTT--S-SCEEEEETTSEEEEE--CT-TS-CEE------EEEECCSS--CEEEEEECTT---SSEEEE
T ss_pred CCCCCcEEEEEECCC--C-CEEEEEeCCCEEEEE--EC-CC-CEE------EEEeCCCC--CEEEEEECCC---CCEEEE
Confidence 378899999999999 8 599999999999999 63 22 344 77888876 8999999998 444553
Q ss_pred -ecCCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc--eEEeeccCCcEEEEEEeeccccce
Q 000080 115 -ASENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME--TVLWKKKNTLWEIAWKFKENYPQN 190 (2389)
Q Consensus 115 -SyDntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD--V~IW~~~~s~Wecvwt~~~~~~~~ 190 (2389)
+.|++|+||... + .+..++. |...|++++|+|+|++|++++.| +++|+........ . ..+...
T Consensus 75 ~~~d~~i~vWd~~-----~----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~---~-~~~~~~ 141 (577)
T 2ymu_A 75 ASDDKTVKLWNRN-----G----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT---L-TGHSSS 141 (577)
T ss_dssp EETTSCEEEEETT-----S----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEE---E-CCCSSC
T ss_pred EeCCCEEEEEECC-----C----CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeee---c-cCCCCc
Confidence 468999999854 1 1334453 78899999999999999999998 8899865433322 2 345567
Q ss_pred EEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccCce
Q 000080 191 LVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHV 269 (2389)
Q Consensus 191 ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nI 269 (2389)
+..+.++|++. +++++.+.. +.++. ...........|...|.++.|+| ||+.
T Consensus 142 v~~~~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~v~~~~~~~--------~~~~----- 194 (577)
T 2ymu_A 142 VWGVAFSPDGQTIASASDDKT------------VKLWN--RNGQLLQTLTGHSSSVWGVAFSP--------DGQT----- 194 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSE------------EEEEC--TTSCEEEEEECCSSCEEEEEECT--------TSSC-----
T ss_pred eeeeeeecCCccceecccccc------------eeccc--cceeeeeeccCCCcceeeeeecC--------CCCE-----
Confidence 78889999999 888877533 12221 12223344568999999999999 5555
Q ss_pred EEeeecCCeEEEEEe
Q 000080 270 LLTCCLDGTVRLWCE 284 (2389)
Q Consensus 270 LAScSdDgTVRLW~e 284 (2389)
|+|++.||+|+||+.
T Consensus 195 l~~~~~d~~v~~w~~ 209 (577)
T 2ymu_A 195 IASASDDKTVKLWNR 209 (577)
T ss_dssp EEEEETTSEEEEECT
T ss_pred EEEEcCCCEEEEEeC
Confidence 999999999999983
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=228.91 Aligned_cols=171 Identities=12% Similarity=0.080 Sum_probs=144.9
Q ss_pred ccceeeccccccccccccccCCCC----cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPAT----VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~at----v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
..+|+| +.+...++|+....... ...-.|.+++|+|+|++||+|+.|++|++||+.+++++.++.
T Consensus 135 ~~l~~g-~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~---------- 203 (321)
T 3ow8_A 135 QYLATG-THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE---------- 203 (321)
T ss_dssp SEEEEE-CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----------
T ss_pred CEEEEE-cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----------
Confidence 455666 66666666665322111 112356999999999999999999999999999999988874
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEE
Q 000080 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2389)
Q Consensus 2269 GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrL 2348 (2389)
+|...|++++|+|||++||+|+.||+|++||++++ ....++.+|...|.+++|+| +|++|||+ +.|++|+|
T Consensus 204 ~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~sp-~~~~l~s~---s~D~~v~i 274 (321)
T 3ow8_A 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-----NLAGTLSGHASWVLNVAFCP-DDTHFVSS---SSDKSVKV 274 (321)
T ss_dssp CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECT-TSSEEEEE---ETTSCEEE
T ss_pred ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-----ceeEEEcCCCCceEEEEECC-CCCEEEEE---eCCCcEEE
Confidence 46688999999999999999999999999999976 35678899999999999999 99999997 48999999
Q ss_pred eeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2349 WDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2349 WD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
||+ .++++++++.+|.+.|++++++++|++++|-+
T Consensus 275 wd~--~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 275 WDV--GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EeC--CCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 998 57788999999999999999999999888754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=227.83 Aligned_cols=170 Identities=14% Similarity=0.089 Sum_probs=138.5
Q ss_pred ccceeeccccccccccccccCCCC--c------CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPAT--V------ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN 2264 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~at--v------~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~ 2264 (2389)
+..++| +.|.+.++|+....... . +.-.|++|+|+|||++|||||.|++|++||+.+++++.++.
T Consensus 94 ~~l~~~-s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~------ 166 (344)
T 4gqb_B 94 RGILVA-SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR------ 166 (344)
T ss_dssp TEEEEE-ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------
T ss_pred CeEEEE-ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc------
Confidence 456677 78888999987533211 1 12357999999999999999999999999999999999884
Q ss_pred CCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceee--eecCCCeeEEEEecCCCCEEEEeecCC
Q 000080 2265 VPPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESC--LCFSSHAMDVSYITSSGSVIAAAGHSS 2341 (2389)
Q Consensus 2265 ~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl--~gHs~~V~sVAFSP~DGslLASAG~sS 2341 (2389)
||.+.|++++|+|+| +.||||+.||+|++||++++. +...+ ..|...+.+++|+|+++++||+| +
T Consensus 167 ----~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg---~ 234 (344)
T 4gqb_B 167 ----AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-----PASQIGCSAPGYLPTSLAWHPQQSEVFVFG---D 234 (344)
T ss_dssp ----CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-----CEEECC----CCCEEEEEECSSCTTEEEEE---E
T ss_pred ----CcCCceEEEEecCCCCCceeeeccccccccccccccc-----eeeeeecceeeccceeeeecCCCCcceEEe---c
Confidence 577999999999999 578999999999999999862 34333 45667899999999778899986 5
Q ss_pred CCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccch-hhhc
Q 000080 2342 NGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN-FALS 2383 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~-~~~s 2383 (2389)
.|++|+|||+ .++++++++.+|.+.|++++++|+|. +++|
T Consensus 235 ~dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 235 ENGTVSLVDT--KSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp TTSEEEEEES--CC--CCEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred cCCcEEEEEC--CCCcEEEEEcCCCCCEEEEEEccCCCeEEEE
Confidence 8999999998 57888999999999999999999985 4544
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=225.82 Aligned_cols=176 Identities=14% Similarity=0.112 Sum_probs=144.4
Q ss_pred cccceeeccccccccccccccCC----C---CcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc--eeeEecccCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPP----A---TVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPA 2262 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~----a---tv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk--~l~Tl~vl~g 2262 (2389)
..++|+| +.|.+.++|+..... . .-+.-.|++|+|+|+|++||+||.|++|+|||+.++. ++.++.
T Consensus 28 g~~las~-~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~---- 102 (345)
T 3fm0_A 28 GTLLASC-GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE---- 102 (345)
T ss_dssp SSCEEEE-ETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC----
T ss_pred CCEEEEE-cCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc----
Confidence 4578888 899999999875321 0 1122357999999999999999999999999998774 455653
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC
Q 000080 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2389)
Q Consensus 2263 h~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~ 2342 (2389)
||...|++|+|+|||++||+|+.|++|++||++++. ....+..+.+|...|.+++|+| +|++||++ +.
T Consensus 103 ------~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~---s~ 170 (345)
T 3fm0_A 103 ------GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED--EYECVSVLNSHTQDVKHVVWHP-SQELLASA---SY 170 (345)
T ss_dssp ------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS--CEEEEEEECCCCSCEEEEEECS-SSSCEEEE---ET
T ss_pred ------CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC--CeEEEEEecCcCCCeEEEEECC-CCCEEEEE---eC
Confidence 567899999999999999999999999999998753 2245677889999999999999 99999997 48
Q ss_pred CCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2343 GINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2343 D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
|++|+|||+......++..+.+|.+.|++++++|+|++.+|-
T Consensus 171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 999999997321113568899999999999999999988764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=221.80 Aligned_cols=143 Identities=11% Similarity=0.141 Sum_probs=127.3
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|++|+|||+|++||||+.|++|+|||+.+++++.++. +|...|++++|+|+|++||+|+.|++|++||+
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ----------VTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----------CCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee----------ccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 46999999999999999999999999999999988874 35688999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCC-CceEEEEeecCcEEEEeecc-cc
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEGLYDLFLPLK-LL 2378 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg-~~v~sL~GH~~~V~svA~~~-~~ 2378 (2389)
+++ +.+.++.+|...|++++|+| +|++|||| +.|++|+|||+. ++ ...+.+.+|...|.+++++| ++
T Consensus 85 ~~~-----~~~~~~~~h~~~v~~~~~~~-~~~~l~sg---s~D~~v~lWd~~--~~~~~~~~~~~h~~~v~~v~~~p~~~ 153 (304)
T 2ynn_A 85 NTG-----EKVVDFEAHPDYIRSIAVHP-TKPYVLSG---SDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDP 153 (304)
T ss_dssp TTC-----CEEEEEECCSSCEEEEEECS-SSSEEEEE---ETTSCEEEEEGG--GTTEEEEEECCCCSCEEEEEECTTCT
T ss_pred CCC-----cEEEEEeCCCCcEEEEEEcC-CCCEEEEE---CCCCeEEEEECC--CCcchhhhhcccCCcEEEEEECCCCC
Confidence 987 46788899999999999999 89999997 599999999983 34 34678999999999999999 56
Q ss_pred hhhhcc
Q 000080 2379 NFALSK 2384 (2389)
Q Consensus 2379 ~~~~s~ 2384 (2389)
+..+|-
T Consensus 154 ~~l~sg 159 (304)
T 2ynn_A 154 STFASG 159 (304)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 666554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=216.89 Aligned_cols=213 Identities=18% Similarity=0.345 Sum_probs=158.1
Q ss_pred CCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE
Q 000080 35 TAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA 114 (2389)
Q Consensus 35 ~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA 114 (2389)
.+|+....+++|+|| | ..+|.|+.+..|..| +.....+. -..+.+.+|.. +|.+++|+|+ +..||+
T Consensus 102 ~~h~~~v~~v~~sp~--~-~~l~s~s~D~~v~iw--d~~~~~~~----~~~~~~~~h~~--~v~~~~~~p~---~~~l~s 167 (345)
T 3fm0_A 102 EGHENEVKSVAWAPS--G-NLLATCSRDKSVWVW--EVDEEDEY----ECVSVLNSHTQ--DVKHVVWHPS---QELLAS 167 (345)
T ss_dssp CCCSSCEEEEEECTT--S-SEEEEEETTSCEEEE--EECTTSCE----EEEEEECCCCS--CEEEEEECSS---SSCEEE
T ss_pred cCCCCCceEEEEeCC--C-CEEEEEECCCeEEEE--ECCCCCCe----EEEEEecCcCC--CeEEEEECCC---CCEEEE
Confidence 467788899999998 7 588888888888888 42222110 11256667765 8999999997 555654
Q ss_pred -ecCCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc--eEEeec-------------cCCcE
Q 000080 115 -ASENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME--TVLWKK-------------KNTLW 177 (2389)
Q Consensus 115 -SyDntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD--V~IW~~-------------~~s~W 177 (2389)
+.|++|++|... ...|.+..++. |+..|++|+|+|+|++||+||.| |+||+. ....|
T Consensus 168 ~s~d~~i~~w~~~------~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 168 ASYDDTVKLYREE------EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp EETTSCEEEEEEE------TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred EeCCCcEEEEEec------CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 578999999876 22577777775 89999999999999999999998 999984 13569
Q ss_pred EEEEEeeccccceEEEEeecCCCc-eEeeecccccccC---CCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccC
Q 000080 178 EIAWKFKENYPQNLVSATWSIEGP-SATAASMSQLDLL---GPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPS 253 (2389)
Q Consensus 178 ecvwt~~~~~~~~ivsvaWSpdG~-fATag~dikf~~~---~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps 253 (2389)
+|+.++.+.|...+++++|+|+|. +||++++..++++ ...+...|.+.. ......+|..+|++|+|+|
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~-------~~~~~~~h~~~V~~v~~~p- 313 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL-------TAHLHQAHSQDVNCVAWNP- 313 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE-------EEEETTSSSSCEEEEEECS-
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE-------EeeecccccCcEeEeEEeC-
Confidence 999988888888999999999988 9999997542222 111111111111 1123468999999999999
Q ss_pred CCCCCCCCCccccCceEEeeecCCeEEEEEeec
Q 000080 254 TRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMD 286 (2389)
Q Consensus 254 ~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d 286 (2389)
+ ..++|||||+||+||||+...
T Consensus 314 -------~----~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 314 -------K----EPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp -------S----STTEEEEEETTSCEEEEEECC
T ss_pred -------C----CceEEEEcCCCCcEEEEEecC
Confidence 2 235799999999999999764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=222.80 Aligned_cols=175 Identities=16% Similarity=0.160 Sum_probs=137.3
Q ss_pred ccceeeccccccccccccccC----CCCc----CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCC-------CceeeEe
Q 000080 2193 GIGASALGWETQDDFEDYVDP----PATV----ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGK-------DKATATY 2257 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~----~atv----~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~t-------Gk~l~Tl 2257 (2389)
+++|+| +.|.+.++|+.... ..++ +.-.|++|+|+|+|++||+||.|++|+|||+.. .+++.++
T Consensus 25 ~~las~-~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 103 (330)
T 2hes_X 25 GILATG-STDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII 103 (330)
T ss_dssp TEEEEE-ESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE
T ss_pred CEEEEE-cCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE
Confidence 388898 88999999877431 1111 234679999999999999999999999999853 2345555
Q ss_pred cccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEe
Q 000080 2258 GVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAA 2337 (2389)
Q Consensus 2258 ~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASA 2337 (2389)
. ||...|++|+|+|||++||+|+.|++|++||++..+. ..+++..+.+|...|.+++|+| +|++|||+
T Consensus 104 ~----------~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~-~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~ 171 (330)
T 2hes_X 104 E----------GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE-EYECISVLQEHSQDVKHVIWHP-SEALLASS 171 (330)
T ss_dssp C--------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC-CCEEEEEECCCSSCEEEEEECS-SSSEEEEE
T ss_pred c----------CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC-CeEEEEEeccCCCceEEEEECC-CCCEEEEE
Confidence 2 5778999999999999999999999999999964321 2245677889999999999999 99999997
Q ss_pred ecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc--chhhhc
Q 000080 2338 GHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL--LNFALS 2383 (2389)
Q Consensus 2338 G~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~--~~~~~s 2383 (2389)
+.|++|||||+.....++++.+.+|.+.|++++++|+ +.+++|
T Consensus 172 ---s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 172 ---SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp ---ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred ---cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence 4899999999742222578999999999999999998 555555
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=221.30 Aligned_cols=169 Identities=17% Similarity=0.204 Sum_probs=139.6
Q ss_pred ceeeccccccccccccccC--CCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC
Q 000080 2195 GASALGWETQDDFEDYVDP--PATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA 2270 (2389)
Q Consensus 2195 ~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH 2270 (2389)
.+++ +.|.+.++|+.... ..++ +.-.|.+++|+|++++|+||+.|++|++||+.+++++.++. +|
T Consensus 157 l~s~-s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~----------~h 225 (340)
T 1got_B 157 IVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----------GH 225 (340)
T ss_dssp EEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC----------CC
T ss_pred EEEE-ECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc----------CC
Confidence 5566 67777888876321 1111 12357999999999999999999999999999999998884 46
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeee--ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEE
Q 000080 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCL--CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2389)
Q Consensus 2271 ~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~--gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrL 2348 (2389)
...|++|+|+|+|+.||+|+.||+|++||++++ +++.++. .+...|.+++|+| +|++||+| +.|++|+|
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g---~~d~~i~v 296 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRAD-----QELMTYSHDNIICGITSVSFSK-SGRLLLAG---YDDFNCNV 296 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCTTCCSCEEEEEECT-TSSEEEEE---ETTSEEEE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-----cEEEEEccCCcccceEEEEECC-CCCEEEEE---CCCCeEEE
Confidence 788999999999999999999999999999975 2333332 3445799999999 99999997 48999999
Q ss_pred eeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2349 WDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2349 WD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
||+ .+++.+..+.+|.+.|.+++++|+|++.+|-.
T Consensus 297 wd~--~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 297 WDA--LKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp EET--TTCCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEc--ccCcEeeEeecCCCcEEEEEEcCCCCEEEEEc
Confidence 998 46778899999999999999999999887743
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=226.75 Aligned_cols=173 Identities=17% Similarity=0.168 Sum_probs=149.2
Q ss_pred cccceeeccccccccccccccC--CCCcC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDP--PATVE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~--~atv~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
+.++|+| +.|.+.++|++... .+++. .-.|.+++|+|+|++|+|||.|++|++||+.+|+++.++.
T Consensus 162 ~~~l~sg-s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--------- 231 (410)
T 1vyh_C 162 GKLLASC-SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------- 231 (410)
T ss_dssp SSEEEEE-ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred CCEEEEE-eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---------
Confidence 3467888 88999999987422 22222 2367999999999999999999999999999999999884
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCC-----------------
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS----------------- 2330 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D----------------- 2330 (2389)
||...|++++|+|||+.||+|+.||+|++||++++ .....+.+|...|.+++|+|+.
T Consensus 232 -~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 232 -GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred -CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 46789999999999999999999999999999986 3567788999999999999931
Q ss_pred --CCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2331 --GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2331 --GslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|.+|||| +.|++|+|||+ .+++++.++.+|.+.|++++++|+|++++|-+
T Consensus 306 ~~g~~l~sg---s~D~~i~iwd~--~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 306 KPGPFLLSG---SRDKTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp --CCEEEEE---ETTSEEEEEET--TTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred CCCCEEEEE---eCCCeEEEEEC--CCCceEEEEECCCCcEEEEEEcCCCCEEEEEe
Confidence 6789997 58999999998 57788999999999999999999999988754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-21 Score=218.86 Aligned_cols=175 Identities=13% Similarity=0.131 Sum_probs=147.9
Q ss_pred ccccccceeeccccccccccccccC-------CCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecc
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDP-------PATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV 2259 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~-------~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~v 2259 (2389)
|+...++|+| ++|.+.++|+.... ..++ +.-.|.+++|+|+|++|+|||.|++||+||+.+|+++.++.
T Consensus 27 ~~~~~~l~s~-s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~- 104 (319)
T 3frx_A 27 AGQPNLLLSA-SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV- 104 (319)
T ss_dssp SSCTTEEEEE-ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred CCCccEEEEe-cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc-
Confidence 4455688999 99999999987421 1111 12357999999999999999999999999999999988884
Q ss_pred cCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC-----CCCEE
Q 000080 2260 LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-----SGSVI 2334 (2389)
Q Consensus 2260 l~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~-----DGslL 2334 (2389)
||...|++|+|+|+|+.|++|+.|++|++||++. +.+.++.+|...|.+++|+|. ++.+|
T Consensus 105 ---------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l 169 (319)
T 3frx_A 105 ---------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG------QCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169 (319)
T ss_dssp ---------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS------CEEEEECCCSSCEEEEEECCC------CCEE
T ss_pred ---------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CeEEEEeccCCcEEEEEEccCCCCCCCccEE
Confidence 4678999999999999999999999999999974 356788899999999999983 34589
Q ss_pred EEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2335 AAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2335 ASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+++ +.|++|++||+ .+.+....+.+|.+.|++++++|+|++++|-+
T Consensus 170 ~s~---~~d~~i~~wd~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 170 ISA---GNDKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAG 215 (319)
T ss_dssp EEE---ETTSCEEEEET--TTTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred EEE---eCCCEEEEEEC--CcchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence 987 48999999998 45667889999999999999999999888754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=221.53 Aligned_cols=171 Identities=12% Similarity=0.173 Sum_probs=146.3
Q ss_pred ccceeeccccccccccccccCC--CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPP--ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~--atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
.+.|++ +.|.+.++|+..... .++ ....+.+++|+|+|++||+|+.|++|++||+.+++...++.
T Consensus 93 ~~l~s~-s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~---------- 161 (321)
T 3ow8_A 93 PIAASS-SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD---------- 161 (321)
T ss_dssp SEEEEE-ETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE----------
T ss_pred CEEEEE-eCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec----------
Confidence 456777 888888888764221 111 12345789999999999999999999999999999887774
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEE
Q 000080 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2389)
Q Consensus 2269 GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrL 2348 (2389)
+|...|.+++|+|||++||+|+.||+|++||++++ +.+.++.+|...|++++|+| +|++|||+ +.|++|+|
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~sp-d~~~l~s~---s~dg~i~i 232 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-----KLLHTLEGHAMPIRSLTFSP-DSQLLVTA---SDDGYIKI 232 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCCCEEEECT-TSCEEEEE---CTTSCEEE
T ss_pred CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----cEEEEEcccCCceeEEEEcC-CCCEEEEE---cCCCeEEE
Confidence 24578999999999999999999999999999986 46788899999999999999 99999997 58999999
Q ss_pred eeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2349 WDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2349 WD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
||+ .+++++..+.+|.+.|.+++++|+|++++|-+
T Consensus 233 wd~--~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 233 YDV--QHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp EET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEC--CCcceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 998 46778899999999999999999999887754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=228.29 Aligned_cols=144 Identities=19% Similarity=0.282 Sum_probs=132.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
+|++++|||++++|||||.|++|++||+.+|+.+.++. ||.+.|++|+|+|+|++||+|+.|++|++||+
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~----------~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK----------GHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC----------CCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----------ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 45999999999999999999999999999999988884 57789999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+++ +++.++.+|...|.+++|+| +|++|+|| +.|++|++||+ .++.+++++.+|...|.+++++++|++
T Consensus 180 ~~~-----~~~~~~~~h~~~V~~v~~~p-~~~~l~s~---s~D~~i~~wd~--~~~~~~~~~~~h~~~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 180 QGF-----ECIRTMHGHDHNVSSVSIMP-NGDHIVSA---SRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTL 248 (410)
T ss_dssp TSS-----CEEECCCCCSSCEEEEEECS-SSSEEEEE---ETTSEEEEEET--TTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCC-----ceeEEEcCCCCCEEEEEEeC-CCCEEEEE---eCCCeEEEEEC--CCCcEEEEEeCCCccEEEEEECCCCCE
Confidence 875 46788899999999999999 99999997 48999999998 578889999999999999999999998
Q ss_pred hhccc
Q 000080 2381 ALSKC 2385 (2389)
Q Consensus 2381 ~~s~~ 2385 (2389)
+++-+
T Consensus 249 l~s~s 253 (410)
T 1vyh_C 249 IASCS 253 (410)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 87643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.4e-21 Score=215.32 Aligned_cols=173 Identities=19% Similarity=0.249 Sum_probs=138.9
Q ss_pred ccceeeccccccccccccccCC--CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce-eeEecccCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPP--ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPP 2267 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~--atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~-l~Tl~vl~gh~~p~ 2267 (2389)
..+|+| +.|.+.++|+..... .++ +.-.|++|+|+|++++|+|||.|++|++||+.++.. ..++.
T Consensus 68 ~~l~s~-s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~--------- 137 (304)
T 2ynn_A 68 NWIIVG-SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--------- 137 (304)
T ss_dssp TEEEEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC---------
T ss_pred CEEEEE-CCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc---------
Confidence 346667 777777888764221 111 123579999999999999999999999999988854 45552
Q ss_pred CCCCCCEEEEEECC-CCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC-CCCEEEEeecCCCCCe
Q 000080 2268 PYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSP-DG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~-DGslLASAG~sS~D~T 2345 (2389)
||...|++|+|+| +++.||+|+.|++|++||++++. .......+|...+..++|+|. ++++|||+ +.|++
T Consensus 138 -~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---s~D~~ 209 (304)
T 2ynn_A 138 -GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITA---SDDLT 209 (304)
T ss_dssp -CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS----CSEEEECCCTTCEEEEEECCSTTCCEEEEE---ETTSE
T ss_pred -ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC----ccceeccCCcCcEEEEEEEEcCCCCEEEEE---cCCCe
Confidence 5678999999999 68999999999999999998752 223333567788999999873 77899997 48999
Q ss_pred EEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2346 VVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2346 VrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|+|||+ .++++++++.+|.+.|.+++++|++++++|-+
T Consensus 210 i~iWd~--~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 210 IKIWDY--QTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (304)
T ss_dssp EEEEET--TTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEeC--CCCccceeeCCCCCCEEEEEECCCCCEEEEEc
Confidence 999998 56788999999999999999999999887754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-21 Score=223.10 Aligned_cols=170 Identities=15% Similarity=0.124 Sum_probs=137.2
Q ss_pred ccceeeccccccccccccccC--CCCcC--ceeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP--PATVE--NISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~--~atv~--ni~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
..+|+| +.|.+.++|+.... ..++. .-.|++++|+|+++ +|+|||.|++|++||+++++++.++..
T Consensus 140 ~~l~sg-s~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------- 210 (344)
T 4gqb_B 140 TQAVSG-SKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-------- 210 (344)
T ss_dssp SEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------
T ss_pred CEEEEE-eCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec--------
Confidence 457777 78888888876421 12221 24679999999986 789999999999999999998887641
Q ss_pred CCCCCCEEEEEECCC-CCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCC-CEEEEeecCCCCCe
Q 000080 2268 PYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSG-SVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DG-slLASAG~sS~D~T 2345 (2389)
.+|...|.+++|+|+ ++.||+|+.||+|+|||++++ +++.++.+|...|++++|+| +| ++|||+ |.|++
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-----~~~~~~~~h~~~v~~v~fsp-~g~~~lasg---s~D~~ 281 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-----SCVLSSAVHSQCVTGLVFSP-HSVPFLASL---SEDCS 281 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------CCEEEECCSSCEEEEEECS-SSSCCEEEE---ETTSC
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-----cEEEEEcCCCCCEEEEEEcc-CCCeEEEEE---eCCCe
Confidence 234567999999996 578999999999999999986 57889999999999999999 66 689986 58999
Q ss_pred EEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2346 VVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2346 VrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
|+|||+ .+++ +..+.+|++.|++++++|+|++.|.
T Consensus 282 i~vwd~--~~~~-~~~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 282 LAVLDS--SLSE-LFRSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EEEECT--TCCE-EEEECCCSSCEEEEEECSSSTTEEE
T ss_pred EEEEEC--CCCc-EEEEcCCCCCEEEEEEeCCCCeEEE
Confidence 999997 3443 5678999999999999999998764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-17 Score=195.18 Aligned_cols=212 Identities=16% Similarity=0.223 Sum_probs=148.2
Q ss_pred ccccccCCCC---CCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCC-eeEEEEcC
Q 000080 29 RSEFIPTAPT---RSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLP-VTSISWSP 104 (2389)
Q Consensus 29 ~~~~ip~ap~---~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~d-Vk~VaWSP 104 (2389)
+..++|+.|. ....+++|+|| | .++|++++..+.+..++++....+.. +.+++|.. . |.+++|+|
T Consensus 6 ~~~~~~~~~~~~~~~v~~~~~spd--g-~~l~~~~~~~v~v~~~~~~~~~~~~~------~~~~~h~~--~~v~~~~~sp 74 (615)
T 1pgu_A 6 LKEIIPPQPSTQRNFTTHLSYDPT--T-NAIAYPCGKSAFVRCLDDGDSKVPPV------VQFTGHGS--SVVTTVKFSP 74 (615)
T ss_dssp EEEEECCCCCCCTTCCCCCEEETT--T-TEEEEEETTEEEEEECCSSCCSSCSE------EEECTTTT--SCEEEEEECS
T ss_pred hhhccCCCCCCccCceeEEEECCC--C-CEEEEecCCeEEEEECCCCCCccccc------eEEecCCC--ceEEEEEECc
Confidence 3455565555 44567889998 7 59999998877777655432222333 67788866 8 99999999
Q ss_pred --CCCCCCcEEE-ecCCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc------eEEeeccC
Q 000080 105 --ETPSIGQLAA-ASENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME------TVLWKKKN 174 (2389)
Q Consensus 105 --d~~~~GeIaA-SyDntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD------V~IW~~~~ 174 (2389)
+ +..||+ +.|++|+||..+...........+...+. |...|.+++|+|+|++|++++.+ +.+|+..
T Consensus 75 ~~~---~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~- 150 (615)
T 1pgu_A 75 IKG---SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG- 150 (615)
T ss_dssp STT---CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-
T ss_pred CCC---CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC-
Confidence 8 555554 46899999987511001111234444554 78899999999999999999874 6778732
Q ss_pred CcEEEEEEeeccccceEEEEeecCCCc--eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCC---CeeEEE
Q 000080 175 TLWEIAWKFKENYPQNLVSATWSIEGP--SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQ---PVSMVQ 249 (2389)
Q Consensus 175 s~Wecvwt~~~~~~~~ivsvaWSpdG~--fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~q---dVn~V~ 249 (2389)
+.+.++. .|...+.+++|+|+|. +||++.+.. +.+|... ..........|.. .|.+++
T Consensus 151 ---~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~------------v~vwd~~-~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 151 ---NSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGS------------VVFYQGP-PFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp ---CEEEECC-SCSSCEEEEEECSSSSCEEEEEETTTE------------EEEEETT-TBEEEEEECSSSCTTCCEEEEE
T ss_pred ---Ccceeee-cCCccEEEEEECCCCCcEEEEEeCCCc------------EEEEeCC-CcceeeeecccCCCCceEEEEE
Confidence 2444444 4667788999999996 899888744 4455322 2223345567998 999999
Q ss_pred eccCCCCCCCCC-CccccCceEEeeecCCeEEEEEee
Q 000080 250 WRPSTRRHSPGD-TKRSQRHVLLTCCLDGTVRLWCEM 285 (2389)
Q Consensus 250 W~Ps~~~~~~~D-gk~~~~nILAScSdDgTVRLW~e~ 285 (2389)
|+| | ++ .|++++.||+|+||+..
T Consensus 214 ~~~--------~~~~-----~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 214 FSP--------DSGE-----FVITVGSDRKISCFDGK 237 (615)
T ss_dssp ECS--------TTCC-----EEEEEETTCCEEEEETT
T ss_pred ECC--------CCCC-----EEEEEeCCCeEEEEECC
Confidence 999 4 44 49999999999999954
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=214.59 Aligned_cols=174 Identities=11% Similarity=0.078 Sum_probs=143.1
Q ss_pred ccccceeeccccccccccccccCC---------CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecc
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPP---------ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV 2259 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~---------atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~v 2259 (2389)
...++|+| +.|.+.++|+..... .++ +.-.|.+++|+|++.+|+|||.|++|||||+.+++++.++.
T Consensus 38 d~~~l~sg-s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~- 115 (343)
T 2xzm_R 38 DSPVLISG-SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV- 115 (343)
T ss_dssp CCCEEEEE-ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE-
T ss_pred CCCEEEEE-cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-
Confidence 34578888 899999999875321 111 12357999999999999999999999999999999988884
Q ss_pred cCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCC--------
Q 000080 2260 LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSG-------- 2331 (2389)
Q Consensus 2260 l~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DG-------- 2331 (2389)
||...|++|+|+|||+.||+|+.|++|++||+... .........+|...|.+++|+| ++
T Consensus 116 ---------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 182 (343)
T 2xzm_R 116 ---------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE---CKFSSAEKENHSDWVSCVRYSP-IMKSANKVQP 182 (343)
T ss_dssp ---------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC---EEEECCTTTSCSSCEEEEEECC-CCCSCSCCCS
T ss_pred ---------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC---ceeeeecccCCCceeeeeeecc-ccccccccCC
Confidence 46789999999999999999999999999999842 1112222347999999999999 65
Q ss_pred --CEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2332 --SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2332 --slLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.+||++ +.|++|+|||. ..+.+..+.+|.+.|.+++++|+|+++++-+
T Consensus 183 ~~~~l~s~---~~d~~i~iwd~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 183 FAPYFASV---GWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp SCCEEEEE---ETTSEEEEEET---TTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEE---cCCCEEEEEcC---CCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 789987 48999999995 4566789999999999999999999987754
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=230.74 Aligned_cols=144 Identities=18% Similarity=0.227 Sum_probs=124.7
Q ss_pred eEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
.|++++|+|+++ .|||||.|++|++||..+++++.++. ||.+.|++|+|+|||++||||+.|++|+|||
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~----------~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG----------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec----------cccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 569999999998 59999999999999999998888874 5779999999999999999999999999999
Q ss_pred CCCCCccCcccceeee-------ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--------------
Q 000080 2300 LEVGGRSNVRPMESCL-------CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-------------- 2358 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~-------gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~-------------- 2358 (2389)
+.++. +..++. +|.+.|.+++|+| ||++|||+ +.|++|||||+. ++++
T Consensus 219 ~~~g~-----~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~---s~D~~v~lWd~~--~~~~~~~~~~~~~~~~~~ 287 (611)
T 1nr0_A 219 GVDGT-----KTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASA---SADKTIKIWNVA--TLKVEKTIPVGTRIEDQQ 287 (611)
T ss_dssp TTTCC-----EEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEE---ETTSEEEEEETT--TTEEEEEEECCSSGGGCE
T ss_pred CCCCc-----EeeeeccccccccccCCCEEEEEECC-CCCEEEEE---eCCCeEEEEeCC--CCceeeeecCCCCcccee
Confidence 99863 344442 8999999999999 99999997 489999999973 3333
Q ss_pred -----------------------------eEEEEeecCcEEEEeecccchhhhccc
Q 000080 2359 -----------------------------RASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2359 -----------------------------v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
++.+.+|.+.|++++++|+|++++|-.
T Consensus 288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s 343 (611)
T 1nr0_A 288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD 343 (611)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 345678999999999999999988743
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=217.30 Aligned_cols=175 Identities=18% Similarity=0.223 Sum_probs=140.1
Q ss_pred ccccccceeeccccccccccccccCCC---------CcCceeEEEEEEcC-CCCeEEEEeCCCcEEEeecC-CCceeeEe
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPPA---------TVENISTRAFSSHP-LRPFFLVGSSNTHIYLWEFG-KDKATATY 2257 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~a---------tv~ni~VrsVAFsP-dG~~LASGS~DgTIRLWDl~-tGk~l~Tl 2257 (2389)
|.....+++| ++|.+.++|+...... .-+...|.+++|+| ++.+|+|||.|++|++||++ +++++.++
T Consensus 167 ~~~~~~l~s~-s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~ 245 (380)
T 3iz6_a 167 PDQETRLITG-SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245 (380)
T ss_dssp SSSSSCEEEE-CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE
T ss_pred cCCCCEEEEE-CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence 3334567888 8888888887642211 11224579999987 89999999999999999997 45677777
Q ss_pred cccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeec-------CCCeeEEEEecCC
Q 000080 2258 GVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCF-------SSHAMDVSYITSS 2330 (2389)
Q Consensus 2258 ~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gH-------s~~V~sVAFSP~D 2330 (2389)
. ||.+.|++|+|+|||++||||+.||+|++||++++ +++..+..| ...|.+++|+| +
T Consensus 246 ~----------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~-~ 309 (380)
T 3iz6_a 246 H----------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-----HQLQVYNREPDRNDNELPIVTSVAFSI-S 309 (380)
T ss_dssp C----------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-----EEEEEECCCCSSSCCSSCSCSEEEECS-S
T ss_pred C----------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-----cEEEEecccccccccccCceEEEEECC-C
Confidence 3 57789999999999999999999999999999986 234444333 23589999999 9
Q ss_pred CCEEEEeecCCCCCeEEEeeCCCCCCCceEEE----EeecCcEEEEeecccchhhhccc
Q 000080 2331 GSVIAAAGHSSNGINVVVWDTLAPPTSSRASI----TCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2331 GslLASAG~sS~D~TVrLWD~l~~tg~~v~sL----~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|++||+| +.|++|+|||+ ..++.+..+ .+|.+.|++++++|+|++.+|-.
T Consensus 310 g~~l~~g---~~dg~i~vwd~--~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 310 GRLLFAG---YSNGDCYVWDT--LLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp SSEEEEE---CTTSCEEEEET--TTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred CCEEEEE---ECCCCEEEEEC--CCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 9999986 58999999998 456777777 78999999999999999887753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=224.54 Aligned_cols=167 Identities=20% Similarity=0.167 Sum_probs=139.8
Q ss_pred ccceeeccccccccccccccC-CCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP-PATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPY 2269 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~-~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~G 2269 (2389)
..+|++ +.|...++|+.... ..++ +.-.|.+++|+||+++|++|+.|++|++||. +++++.++. +
T Consensus 398 ~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~----------~ 465 (577)
T 2ymu_A 398 QTIASA-SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT----------G 465 (577)
T ss_dssp SCEEEE-ETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE----------C
T ss_pred CEEEEE-eCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc----------C
Confidence 346666 66667777754211 1111 1235699999999999999999999999996 678877774 4
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEe
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLW 2349 (2389)
|...|++++|+|||++||+|+.|++|++||.. + +.+.++.+|...|++++|+| ||++|||+| .|++|+||
T Consensus 466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~-----~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~---~dg~v~lw 535 (577)
T 2ymu_A 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-----QLLQTLTGHSSSVRGVAFSP-DGQTIASAS---DDKTVKLW 535 (577)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S-----CEEEEEECCSSCEEEEEECT-TSSCEEEEE---TTSEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C-----CEEEEEeCCCCCEEEEEEcC-CCCEEEEEE---CcCEEEEE
Confidence 67889999999999999999999999999964 3 46788999999999999999 999999974 89999999
Q ss_pred eCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2350 DTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2350 D~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
|. ++++++.+.+|.+.|++++++|+|++.+|-
T Consensus 536 d~---~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 536 NR---NGQLLQTLTGHSSSVWGVAFSPDGQTIASA 567 (577)
T ss_dssp CT---TSCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred eC---CCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 95 678899999999999999999999998874
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-20 Score=208.55 Aligned_cols=173 Identities=11% Similarity=0.076 Sum_probs=138.5
Q ss_pred cccceeecccccccccccccc----CCCCcC--ceeEEEEEEcCC--CCeEEEEeCCCcEEEeecCCCc--eeeEecccC
Q 000080 2192 AGIGASALGWETQDDFEDYVD----PPATVE--NISTRAFSSHPL--RPFFLVGSSNTHIYLWEFGKDK--ATATYGVLP 2261 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d----~~atv~--ni~VrsVAFsPd--G~~LASGS~DgTIRLWDl~tGk--~l~Tl~vl~ 2261 (2389)
...+|+| ++|.+.++|+... ...++. .-.|++|+|+|+ |++|||||.|++|||||+.+++ ++.++.
T Consensus 21 g~~las~-s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~--- 96 (297)
T 2pm7_B 21 GKRMATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA--- 96 (297)
T ss_dssp SSEEEEE-ETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC---
T ss_pred CCEEEEE-eCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee---
Confidence 4578888 8999999998742 222222 246799999864 8999999999999999998875 444442
Q ss_pred CCCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC----------
Q 000080 2262 AANVPPPYALASISALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS---------- 2329 (2389)
Q Consensus 2262 gh~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~---------- 2329 (2389)
+|...|++|+|+|+ |+.||+|+.|++|++||+++++. .....+.+|...|.+++|+|.
T Consensus 97 -------~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 97 -------VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp -------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC---BCCEEEECCSSCEEEEEECCCC---------
T ss_pred -------cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc---eeeeeeecccCccceEeecCCcccccccCCC
Confidence 46788999999998 89999999999999999987521 224667899999999999993
Q ss_pred --CCCEEEEeecCCCCCeEEEeeCCCCCCC----ceEEEEeecCcEEEEeecccc---hhhhc
Q 000080 2330 --SGSVIAAAGHSSNGINVVVWDTLAPPTS----SRASITCHEGLYDLFLPLKLL---NFALS 2383 (2389)
Q Consensus 2330 --DGslLASAG~sS~D~TVrLWD~l~~tg~----~v~sL~GH~~~V~svA~~~~~---~~~~s 2383 (2389)
++++|||| +.|++|||||+. +++ .++.|.+|++.|++++++|++ ++.+|
T Consensus 167 ~~~~~~l~sg---s~D~~v~lwd~~--~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 167 TKESRKFVTG---GADNLVKIWKYN--SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp ---CCEEEEE---ETTSCEEEEEEE--TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCCcceEEEE---cCCCcEEEEEEc--CCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 25799997 489999999984 333 467899999999999999985 56555
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=212.75 Aligned_cols=171 Identities=16% Similarity=0.168 Sum_probs=140.4
Q ss_pred cccceeeccccccccccccccCC--CCc--CceeEEEEEEcC--CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPP--ATV--ENISTRAFSSHP--LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~--atv--~ni~VrsVAFsP--dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
+...+++ +.|.+.++|+..... .++ +...|.+++|+| +|++|+||+.|++|++||+++++++.++.
T Consensus 166 ~~~l~t~-s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~------- 237 (354)
T 2pbi_B 166 DMQILTA-SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE------- 237 (354)
T ss_dssp SSEEEEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-------
T ss_pred CCEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------
Confidence 3456777 788888888874221 111 123568889988 57899999999999999999999998874
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeee--cCCCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC--FSSHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g--Hs~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
+|...|++|+|+|+|+.||+|+.|++|++||++++ +.+..+.. +...+.+++|+| +|++||++ +.|
T Consensus 238 ---~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~g---~~d 305 (354)
T 2pbi_B 238 ---THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-----REVAIYSKESIIFGASSVDFSL-SGRLLFAG---YND 305 (354)
T ss_dssp ---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCTTCCSCEEEEEECT-TSSEEEEE---ETT
T ss_pred ---CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----cEEEEEcCCCcccceeEEEEeC-CCCEEEEE---ECC
Confidence 46789999999999999999999999999999875 23333332 345788999999 99999997 489
Q ss_pred CeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2344 INVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
++|+|||+ .+++.+..+.+|++.|++++++|+|++.+|-
T Consensus 306 ~~i~vwd~--~~~~~~~~l~~h~~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 306 YTINVWDV--LKGSRVSILFGHENRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp SCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred CcEEEEEC--CCCceEEEEECCCCcEEEEEECCCCCEEEEE
Confidence 99999998 4678899999999999999999999988764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-20 Score=205.82 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=131.1
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|++++|+|+|++||+|+.|++|++||+.+++...++. +|...|.+++|+|||++||+|+.||+|++||+
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----------GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc----------cCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 46999999999999999999999999999999888773 46788999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+++ +.+..+.+|...|.+++|+| +|++||++ +.|++|++||+ .++++++.+.+|...|.+++++++|++
T Consensus 95 ~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~---~~d~~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (312)
T 4ery_A 95 SSG-----KCLKTLKGHSNYVFCCNFNP-QSNLIVSG---SFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSL 163 (312)
T ss_dssp TTC-----CEEEEEECCSSCEEEEEECS-SSSEEEEE---ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCC-----cEEEEEcCCCCCEEEEEEcC-CCCEEEEE---eCCCcEEEEEC--CCCEEEEEecCCCCcEEEEEEcCCCCE
Confidence 986 46788899999999999999 99999997 48999999998 567889999999999999999999998
Q ss_pred hhccc
Q 000080 2381 ALSKC 2385 (2389)
Q Consensus 2381 ~~s~~ 2385 (2389)
.++-+
T Consensus 164 l~~~~ 168 (312)
T 4ery_A 164 IVSSS 168 (312)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77643
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=230.90 Aligned_cols=171 Identities=10% Similarity=0.071 Sum_probs=141.6
Q ss_pred ccccceeeccccccccccccccCCC-------------Cc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce-e
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPPA-------------TV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-T 2254 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~a-------------tv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~-l 2254 (2389)
..+++|++ +.|.+.++|+...... ++ +...|.+++|+|++ .||+||.||+|+|||+.+++. .
T Consensus 224 ~~~~LAs~-s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~ 301 (524)
T 2j04_B 224 LVGCLSFV-SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPS 301 (524)
T ss_dssp SSCEEEEE-ETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCS
T ss_pred CCceEEEE-ecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCce
Confidence 45689999 8999999998753311 11 12467999999965 899999999999999987753 3
Q ss_pred eEecccCCCCCCCCCCCCCEEEE--EECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCC--CeeEEEEecC
Q 000080 2255 ATYGVLPAANVPPPYALASISAL--QFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS--HAMDVSYITS 2329 (2389)
Q Consensus 2255 ~Tl~vl~gh~~p~~GH~~~V~sV--aFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~--~V~sVAFSP~ 2329 (2389)
.++. +|...|++| +|+|+| ++|||||.|++|||||++++ ++..++.+|.. .|.+|+|+|
T Consensus 302 ~~~~----------~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~-----~~~~~~~~~~~~~~v~~v~fsp- 365 (524)
T 2j04_B 302 FYDQ----------VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI-----ATTKTTVSRFRGSNLVPVVYCP- 365 (524)
T ss_dssp EEEE----------CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH-----HHHCEEEEECSCCSCCCEEEET-
T ss_pred EEee----------cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC-----CcccccccccccCcccceEeCC-
Confidence 4453 467899999 689999 99999999999999999875 45567778864 588999999
Q ss_pred CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2330 SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2330 DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+|+.+|++ +.|++|||||+ .++.+++++.+|.+.|++|+++|+|++++|-
T Consensus 366 ~~~~l~s~---~~d~tv~lwd~--~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sg 415 (524)
T 2j04_B 366 QIYSYIYS---DGASSLRAVPS--RAAFAVHPLVSRETTITAIGVSRLHPMVLAG 415 (524)
T ss_dssp TTTEEEEE---CSSSEEEEEET--TCTTCCEEEEECSSCEEEEECCSSCCBCEEE
T ss_pred CcCeEEEe---CCCCcEEEEEC--cccccceeeecCCCceEEEEeCCCCCeEEEE
Confidence 89999986 48999999998 4677889999999999999999999998874
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=208.87 Aligned_cols=171 Identities=12% Similarity=0.140 Sum_probs=143.0
Q ss_pred cccceeeccccccccccccccCCC--C--cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc----eeeEecccCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPPA--T--VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK----ATATYGVLPAA 2263 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~a--t--v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk----~l~Tl~vl~gh 2263 (2389)
...+|++ +.|.+.++|+...... + .+.-.|.+++|+|+|++||+|+.|++|++||+.+++ ....+
T Consensus 67 ~~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~------ 139 (340)
T 1got_B 67 SRLLLSA-SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL------ 139 (340)
T ss_dssp SSEEEEE-ETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE------
T ss_pred CCEEEEE-eCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe------
Confidence 4567888 8889999997642211 1 122357999999999999999999999999998764 23333
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2264 NVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
.||.+.|.+++|+|+++ +++++.|++|++||++++ +++.++.+|.+.|.+++|+| +|++|||+ +.|
T Consensus 140 ----~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~-----~~~~~~~~h~~~v~~~~~~~-~~~~l~sg---~~d 205 (340)
T 1got_B 140 ----AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG-----QQTTTFTGHTGDVMSLSLAP-DTRLFVSG---ACD 205 (340)
T ss_dssp ----ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEECT-TSSEEEEE---ETT
T ss_pred ----cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC-----cEEEEEcCCCCceEEEEECC-CCCEEEEE---eCC
Confidence 25678999999999885 999999999999999986 46788899999999999999 99999997 489
Q ss_pred CeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2344 INVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
++|+|||+ .++++++.+.+|...|++++++|+|+..++-.
T Consensus 206 ~~v~~wd~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 206 ASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp SCEEEEET--TTCSEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEC--CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence 99999998 56788999999999999999999999877643
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=206.89 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=140.4
Q ss_pred ccccceeeccccccccccccccCC--CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCC
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPP--ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVP 2266 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~--atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p 2266 (2389)
....+|+| ++|.+.++|+..... .++ +.-.|.+++|+|++++|+|||.|++|++||+. ++++.++.
T Consensus 76 dg~~l~s~-s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~-------- 145 (319)
T 3frx_A 76 DGAYALSA-SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL-------- 145 (319)
T ss_dssp TSSEEEEE-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC--------
T ss_pred CCCEEEEE-eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe--------
Confidence 34567888 899999999874221 111 12357999999999999999999999999994 67777763
Q ss_pred CCCCCCCEEEEEECCC------CCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecC
Q 000080 2267 PPYALASISALQFDHY------GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS 2340 (2389)
Q Consensus 2267 ~~GH~~~V~sVaFSPD------G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~s 2340 (2389)
||...|.+++|+|+ +..|++|+.|++|++||++++ +....+.+|...|++++|+| +|++|||+
T Consensus 146 --~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~h~~~v~~~~~sp-~g~~l~s~--- 214 (319)
T 3frx_A 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----QIEADFIGHNSNINTLTASP-DGTLIASA--- 214 (319)
T ss_dssp --CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-----EEEEEECCCCSCEEEEEECT-TSSEEEEE---
T ss_pred --ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-----hhheeecCCCCcEEEEEEcC-CCCEEEEE---
Confidence 56789999999995 559999999999999999975 45677889999999999999 99999997
Q ss_pred CCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2341 SNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2341 S~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
+.|++|+|||+ .+++++..+.. .+.|.+++++|+|.++.+
T Consensus 215 ~~dg~i~iwd~--~~~~~~~~~~~-~~~v~~~~~sp~~~~la~ 254 (319)
T 3frx_A 215 GKDGEIMLWNL--AAKKAMYTLSA-QDEVFSLAFSPNRYWLAA 254 (319)
T ss_dssp ETTCEEEEEET--TTTEEEEEEEC-CSCEEEEEECSSSSEEEE
T ss_pred eCCCeEEEEEC--CCCcEEEEecC-CCcEEEEEEcCCCCEEEE
Confidence 48999999998 46677888875 468999999999988654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=200.91 Aligned_cols=172 Identities=14% Similarity=0.178 Sum_probs=143.2
Q ss_pred cccceeeccccccccccccccCC--CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPP--ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~--atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
....|++ +.|...++|+..+.. ..+ +...|.+++|+|+|++|++|+.|++|++||+.+++++.++.
T Consensus 35 ~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--------- 104 (312)
T 4ery_A 35 GEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--------- 104 (312)
T ss_dssp SSEEEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred CCEEEEe-eCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc---------
Confidence 3456777 777778887764221 111 22467999999999999999999999999999999988874
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
+|...|.+++|+|+|+.|++|+.||+|++||++++ +.+..+.+|...|.+++|+| +|++||++ +.|++|+
T Consensus 105 -~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~---~~d~~i~ 174 (312)
T 4ery_A 105 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----KCLKTLPAHSDPVSAVHFNR-DGSLIVSS---SYDGLCR 174 (312)
T ss_dssp -CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECT-TSSEEEEE---ETTSCEE
T ss_pred -CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----EEEEEecCCCCcEEEEEEcC-CCCEEEEE---eCCCcEE
Confidence 46788999999999999999999999999999986 46778889999999999999 99999997 4899999
Q ss_pred EeeCCCCCCCceEEE-EeecCcEEEEeecccchhhhccc
Q 000080 2348 VWDTLAPPTSSRASI-TCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2348 LWD~l~~tg~~v~sL-~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+||+ .+++++..+ ..|...+.+++++|+|++.++-+
T Consensus 175 ~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 175 IWDT--ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp EEET--TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred EEEC--CCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 9998 466777766 45677899999999999877643
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-20 Score=210.62 Aligned_cols=168 Identities=10% Similarity=0.082 Sum_probs=130.7
Q ss_pred ccceeeccccccccccccccCC---------CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCC----ceeeEe
Q 000080 2193 GIGASALGWETQDDFEDYVDPP---------ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKD----KATATY 2257 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~---------atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tG----k~l~Tl 2257 (2389)
.++|+| ++|.+.++|+..... .++ +.-.|++|+|+|+|++|||||.|++|++||+.++ +++.++
T Consensus 71 ~~las~-s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~ 149 (330)
T 2hes_X 71 SLLAAG-SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL 149 (330)
T ss_dssp SEEEEE-ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE
T ss_pred CEEEEE-eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe
Confidence 467788 888888888763211 111 1236799999999999999999999999999432 345555
Q ss_pred cccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCC--CCEEE
Q 000080 2258 GVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS--GSVIA 2335 (2389)
Q Consensus 2258 ~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D--GslLA 2335 (2389)
. +|...|++|+|+|+|+.||||+.|++|++||+.++. .+++..+.+|...|++++|+| + +.+||
T Consensus 150 ~----------~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~ 215 (330)
T 2hes_X 150 Q----------EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTVWSSDFDK-TEGVFRLC 215 (330)
T ss_dssp C----------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECC-SSSSCEEE
T ss_pred c----------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcEEEEEecC-CCCeeEEE
Confidence 3 467899999999999999999999999999997642 246788899999999999999 6 67899
Q ss_pred EeecCCCCCeEEEeeCCCCCC------CceEEEEe-ecCcEEEEeecccc
Q 000080 2336 AAGHSSNGINVVVWDTLAPPT------SSRASITC-HEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2336 SAG~sS~D~TVrLWD~l~~tg------~~v~sL~G-H~~~V~svA~~~~~ 2378 (2389)
|+ +.|++|+|||+..... .++..+.+ |...|+++++++.+
T Consensus 216 s~---s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 262 (330)
T 2hes_X 216 SG---SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG 262 (330)
T ss_dssp EE---ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS
T ss_pred EE---eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC
Confidence 87 4899999999731111 23455655 99999999999766
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=203.05 Aligned_cols=141 Identities=19% Similarity=0.139 Sum_probs=118.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCC--ceeeEecccCCCCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVC 2296 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tG--k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVk 2296 (2389)
.|++++|+|+|++|||||.|++|||||+.++ +++.++. ||.+.|++|+|+|+ |++|||||.||+|+
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~----------gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC----------CCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc----------cccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4699999999999999999999999999743 5667763 57799999999874 99999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCC--CCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D--GslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
|||++++. ...+..+.+|...|++++|+| + |.+||++ +.|++|+|||+..........+.+|...|.++++
T Consensus 81 iWd~~~~~---~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s~---s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~ 153 (297)
T 2pm7_B 81 IWKEENGR---WSQIAVHAVHSASVNSVQWAP-HEYGPMLLVA---SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (297)
T ss_dssp EEEBSSSC---BCCCEEECCCSSCEEEEEECC-GGGCSEEEEE---ETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred EEEcCCCc---eEEEEEeecCCCceeEEEeCc-CCCCcEEEEE---ECCCcEEEEEecCCCceeeeeeecccCccceEee
Confidence 99999762 135667888999999999999 5 8999997 4899999999842111225788999999999999
Q ss_pred cccc
Q 000080 2375 LKLL 2378 (2389)
Q Consensus 2375 ~~~~ 2378 (2389)
+|++
T Consensus 154 ~p~~ 157 (297)
T 2pm7_B 154 APAT 157 (297)
T ss_dssp CCCC
T ss_pred cCCc
Confidence 9973
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=208.86 Aligned_cols=175 Identities=11% Similarity=0.025 Sum_probs=132.1
Q ss_pred ccceeeccccccccccccccCC-----CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce---eeEecccCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPP-----ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA---TATYGVLPA 2262 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~-----atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~---l~Tl~vl~g 2262 (2389)
..+|++ +.|...++|+..... ... +.-.|.+++|+|++++|++|+.|++|++||+.+++. ...+. +
T Consensus 68 ~~l~s~-s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~ 143 (377)
T 3dwl_C 68 NRIVTC-SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK---R 143 (377)
T ss_dssp CCEEEE-ETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC---S
T ss_pred CEEEEE-eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee---c
Confidence 356666 677777777765322 111 123679999999999999999999999999998873 55553 1
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCc-------------cCcccceeeeecCCCeeEEEEecC
Q 000080 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGR-------------SNVRPMESCLCFSSHAMDVSYITS 2329 (2389)
Q Consensus 2263 h~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggr-------------s~~k~l~tl~gHs~~V~sVAFSP~ 2329 (2389)
.|...|++++|+|||++||+|+.|++|++||+++++. ...+++.++ +|...|.+++|+|
T Consensus 144 ------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp- 215 (377)
T 3dwl_C 144 ------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP- 215 (377)
T ss_dssp ------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-
T ss_pred ------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-
Confidence 2678999999999999999999999999999964310 001244555 8999999999999
Q ss_pred CCCEEEEeecCCCCCeEEEeeCCCCCCCc----eEEEEeecCcEEEEeecccchhhhcc
Q 000080 2330 SGSVIAAAGHSSNGINVVVWDTLAPPTSS----RASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2330 DGslLASAG~sS~D~TVrLWD~l~~tg~~----v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+|++||++ +.|++|+|||+ .++++ ++.+.+|...|.+++++|+|+++++-
T Consensus 216 ~~~~l~~~---~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 216 SGNALAYA---GHDSSVTIAYP--SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp TSSCEEEE---ETTTEEC-CEE--CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred CCCEEEEE---eCCCcEEEEEC--CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence 99999997 48999999998 45666 88999999999999999999987764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-20 Score=215.68 Aligned_cols=184 Identities=11% Similarity=-0.024 Sum_probs=141.3
Q ss_pred cccccccccccceeeccccccccccccccCC--CCcC-ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEeccc
Q 000080 2184 LAFGIPGYAGIGASALGWETQDDFEDYVDPP--ATVE-NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVL 2260 (2389)
Q Consensus 2184 ~~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~--atv~-ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl 2260 (2389)
.+|.--|.--..|++ ++|.+.++|+..... .+++ .-.|++|+|+|||++|++|++|+ +++|+..+++.+....
T Consensus 139 v~fSpDg~~la~as~-~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~-- 214 (365)
T 4h5i_A 139 VYISREGTVAAIASS-KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKT-- 214 (365)
T ss_dssp EEECTTSSCEEEEES-CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEEC--
T ss_pred EEEcCCCCEEEEEEC-CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeee--
Confidence 345443443345667 788888998874221 1111 12568999999999999998665 6666666787665432
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC----cEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEE
Q 000080 2261 PAANVPPPYALASISALQFDHYGHRFASAALDG----TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAA 2336 (2389)
Q Consensus 2261 ~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg----TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLAS 2336 (2389)
..+|...|++|+|+|||+.+++++.|+ ++++||+..+. ........+.+|...|++++|+| ||++||+
T Consensus 215 ------~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~Sp-dg~~las 286 (365)
T 4h5i_A 215 ------DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN-TSVLRSKQVTNRFKGITSMDVDM-KGELAVL 286 (365)
T ss_dssp ------CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE-EEEEEEEEEESSCSCEEEEEECT-TSCEEEE
T ss_pred ------cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce-ecceeeeeecCCCCCeEeEEECC-CCCceEE
Confidence 135678899999999999999999998 68999998652 11123456789999999999999 9999999
Q ss_pred eecCCCCCeEEEeeCCCCCCCceEEE-EeecCcEEEEeecccchhhhcc
Q 000080 2337 AGHSSNGINVVVWDTLAPPTSSRASI-TCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2337 AG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
| +.|++|+|||+ .++++++.+ .+|.+.|++|+++|+|++.+|-
T Consensus 287 g---s~D~~V~iwd~--~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 287 A---SNDNSIALVKL--KDLSMSKIFKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp E---ETTSCEEEEET--TTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred E---cCCCEEEEEEC--CCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence 7 48999999998 577888875 8999999999999999998874
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=210.67 Aligned_cols=173 Identities=14% Similarity=0.211 Sum_probs=140.2
Q ss_pred cccceeeccccccccccccccCC--CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPP--ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~--atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
+..+|+| +.|.+.++|+..... .++ +.-.|.+++|+|+|++|+|||.|++|++||+.++++..++.
T Consensus 135 g~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--------- 204 (393)
T 1erj_A 135 GKFLATG-AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--------- 204 (393)
T ss_dssp SSEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---------
T ss_pred CCEEEEE-cCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE---------
Confidence 3467777 778888888764221 111 12357999999999999999999999999999999888774
Q ss_pred CCCCCCEEEEEECC-CCCEEEEEeCCCcEEEeeCCCCCccCcccceee-------eecCCCeeEEEEecCCCCEEEEeec
Q 000080 2268 PYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSNVRPMESC-------LCFSSHAMDVSYITSSGSVIAAAGH 2339 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSP-DG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl-------~gHs~~V~sVAFSP~DGslLASAG~ 2339 (2389)
|...|.+++|+| ||++||+|+.||+|++||++++. .+..+ .+|...|.+++|+| +|++|||+
T Consensus 205 --~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~-- 274 (393)
T 1erj_A 205 --IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-----LVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSG-- 274 (393)
T ss_dssp --CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-----EEEEEC------CCCSSCEEEEEECT-TSSEEEEE--
T ss_pred --cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEeecccccCCCCCCCCEEEEEECC-CCCEEEEE--
Confidence 236799999999 89999999999999999999862 33333 68999999999999 99999997
Q ss_pred CCCCCeEEEeeCCCC----------CCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2340 SSNGINVVVWDTLAP----------PTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2340 sS~D~TVrLWD~l~~----------tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+.|++|+|||+... .+.+...+.+|.+.|.+++++++|++++|-+
T Consensus 275 -s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 275 -SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329 (393)
T ss_dssp -ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred -eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe
Confidence 48999999998321 2356778999999999999999999988754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=208.70 Aligned_cols=166 Identities=10% Similarity=0.089 Sum_probs=132.6
Q ss_pred cccccccccccccCC--CCc------CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCC
Q 000080 2200 GWETQDDFEDYVDPP--ATV------ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYAL 2271 (2389)
Q Consensus 2200 ~~d~~~~~~~~~d~~--atv------~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~ 2271 (2389)
+.+.+.++|+..... ... +.-.|++|+|+|+|++||||+.|++|++||+.+++++.++. +|.
T Consensus 112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~----------~h~ 181 (357)
T 4g56_B 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN----------AHS 181 (357)
T ss_dssp ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC----------CCS
T ss_pred ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc----------CCC
Confidence 456777888764221 111 12357999999999999999999999999999999998884 467
Q ss_pred CCEEEEEECCCCC-EEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEee
Q 000080 2272 ASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2272 ~~V~sVaFSPDG~-~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD 2350 (2389)
..|++|+|+|+|+ .|++++.||+|++||++++.. ........|...+.+++|+|+++.+||+| +.|++|+|||
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~~la~g---~~d~~i~~wd 255 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP---ATRIDFCASDTIPTSVTWHPEKDDTFACG---DETGNVSLVN 255 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC---BCBCCCTTCCSCEEEEEECTTSTTEEEEE---ESSSCEEEEE
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCce---eeeeeeccccccccchhhhhcccceEEEe---ecccceeEEE
Confidence 8999999999985 899999999999999998631 22233456778899999999667889986 4899999999
Q ss_pred CCCCCCCceEEEEeecCcEEEEeecccch-hhhc
Q 000080 2351 TLAPPTSSRASITCHEGLYDLFLPLKLLN-FALS 2383 (2389)
Q Consensus 2351 ~l~~tg~~v~sL~GH~~~V~svA~~~~~~-~~~s 2383 (2389)
+ .++++++.+.+|.+.|++++++|+|. +++|
T Consensus 256 ~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 256 I--KNPDSAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp S--SCGGGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred C--CCCcEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 8 46788999999999999999999985 4444
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=225.94 Aligned_cols=175 Identities=17% Similarity=0.137 Sum_probs=144.0
Q ss_pred cccceeeccccccccccccccCCCC-------c--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPPAT-------V--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA 2262 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~at-------v--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~g 2262 (2389)
.+++|+| +.|.+.++|+....... + +.-.|++++|+|+|++|+|||.|++|||||+.++++++++.
T Consensus 395 ~~~l~s~-s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~---- 469 (694)
T 3dm0_A 395 ADIIVSA-SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---- 469 (694)
T ss_dssp CSEEEEE-ETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----
T ss_pred CCEEEEE-eCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe----
Confidence 4578888 88999999987532111 1 12357999999999999999999999999999999988874
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCC--CEEEEeecC
Q 000080 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSG--SVIAAAGHS 2340 (2389)
Q Consensus 2263 h~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DG--slLASAG~s 2340 (2389)
||...|++|+|+|||++|+|||.|++|++||+.... .........+|...|.+++|+| ++ ..|+|+
T Consensus 470 ------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~--- 537 (694)
T 3dm0_A 470 ------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC--KYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSA--- 537 (694)
T ss_dssp ------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EEEECSSTTSCSSCEEEEEECS-CSSSCEEEEE---
T ss_pred ------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc--ceeeccCCCCCCCcEEEEEEeC-CCCcceEEEE---
Confidence 477899999999999999999999999999987531 1111122357999999999999 65 578886
Q ss_pred CCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2341 SNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2341 S~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+.|++|+|||+ .+++++..+.+|.+.|++++++|+|++.+|-+
T Consensus 538 s~d~~v~vwd~--~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 538 SWDKTVKVWNL--SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eCCCeEEEEEC--CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 48999999998 46677899999999999999999999988754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=210.04 Aligned_cols=172 Identities=14% Similarity=0.111 Sum_probs=136.9
Q ss_pred ccceeeccccccccccccccC--CCCc--CceeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP--PATV--ENISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
..+|+| +.|.+.++|+.... ...+ +.-.|++|+|+|+++ ++++|+.|++|++||+++++++..+. .
T Consensus 152 ~~l~sg-s~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~----- 222 (357)
T 4g56_B 152 TQAVSG-GKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---F----- 222 (357)
T ss_dssp SEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---C-----
T ss_pred CEEEEE-eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---e-----
Confidence 456777 77778888876421 1111 123579999999986 79999999999999999998776553 1
Q ss_pred CCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeE
Q 000080 2268 PYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TV 2346 (2389)
..|...|++|+|+|++ ++||+|+.|++|++||++++ +++.++.+|...|++++|+|+++++|||+ +.|++|
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-----~~~~~~~~~~~~v~~l~~sp~~~~~lasg---s~D~~i 294 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-----DSAQTSAVHSQNITGLAYSYHSSPFLASI---SEDCTV 294 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----GGCEEECCCSSCEEEEEECSSSSCCEEEE---ETTSCE
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCC-----cEeEEEeccceeEEEEEEcCCCCCEEEEE---eCCCEE
Confidence 2356789999999985 78999999999999999976 46788999999999999999444689986 589999
Q ss_pred EEeeCCCCCCCceEEEEeecCcEEEEeecc-cchhhhcc
Q 000080 2347 VVWDTLAPPTSSRASITCHEGLYDLFLPLK-LLNFALSK 2384 (2389)
Q Consensus 2347 rLWD~l~~tg~~v~sL~GH~~~V~svA~~~-~~~~~~s~ 2384 (2389)
+|||+ .++++++. .+|.+.|++|+++| +++..+|-
T Consensus 295 ~iwd~--~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 295 AVLDA--DFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp EEECT--TSCEEEEE-CCCSSCEEEEEECSSSTTEEEEE
T ss_pred EEEEC--CCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEE
Confidence 99998 45555554 48999999999998 67776653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-16 Score=208.68 Aligned_cols=214 Identities=12% Similarity=0.147 Sum_probs=150.8
Q ss_pred cccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCc
Q 000080 32 FIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQ 111 (2389)
Q Consensus 32 ~ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~Ge 111 (2389)
+.-.+|+....+++|+|| | .++|.|+.+..|..| +..++ +.+ +.+++|.. .|.+++|||+ +..
T Consensus 609 ~~~~~h~~~v~~~~~s~~--~-~~l~s~~~d~~i~vw--~~~~~-~~~------~~~~~h~~--~v~~~~~s~~---~~~ 671 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQD--G-QRIASCGADKTLQVF--KAETG-EKL------LDIKAHED--EVLCCAFSSD---DSY 671 (1249)
T ss_dssp EEECCCSSCEEEEEECTT--S-SEEEEEETTSCEEEE--ETTTC-CEE------EEECCCSS--CEEEEEECTT---SSE
T ss_pred EEEecccccEEEEEECCC--C-CEEEEEeCCCeEEEE--ECCCC-CEE------EEeccCCC--CEEEEEEecC---CCE
Confidence 344578888999999998 7 589999888888888 54333 333 56677766 8999999997 555
Q ss_pred EEE-ecCCeEEEEeeCCCCCCCCccceeeEEe-cccceEEEEeecCC--CCeEEEEecc--eEEeeccCCcEEEEEEeec
Q 000080 112 LAA-ASENCIFVFAHDSASSKGSFCWSQNAIL-VQGTKVEAIEWTGS--GDGIVAGGME--TVLWKKKNTLWEIAWKFKE 185 (2389)
Q Consensus 112 IaA-SyDntIRVw~~d~~~~kgd~~W~~~~tL-~hssTV~sIAWSpd--G~rLaSggdD--V~IW~~~~s~Wecvwt~~~ 185 (2389)
||+ +.|++|+||.... + .+..++ .|...|++++|+|+ +..+++|+.| +++|+..++. ++.++.
T Consensus 672 l~s~~~d~~v~vwd~~~----~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--~~~~~~- 740 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSAT----G----KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--CRNTMF- 740 (1249)
T ss_dssp EEEEETTSEEEEEETTT----C----CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--EEEEEC-
T ss_pred EEEEeCCCeEEEEECCC----C----ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc--hhheec-
Confidence 554 4589999998762 2 233444 48889999999995 4578899887 9999976654 444444
Q ss_pred cccceEEEEeecCCCc-eEeeecccccccCCC----------------------------------CCC--------Cce
Q 000080 186 NYPQNLVSATWSIEGP-SATAASMSQLDLLGP----------------------------------KEA--------GKC 222 (2389)
Q Consensus 186 ~~~~~ivsvaWSpdG~-fATag~dikf~~~~~----------------------------------~~~--------~kp 222 (2389)
.|...+.+++|+|+|. +||++.+..+..|.. +.+ +..
T Consensus 741 ~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~ 820 (1249)
T 3sfz_A 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820 (1249)
T ss_dssp CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence 4667788999999999 999988554222210 000 012
Q ss_pred eEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeec
Q 000080 223 VFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMD 286 (2389)
Q Consensus 223 V~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d 286 (2389)
+.+|..............|..+|.+++|+| +++ .|++++.||+|++|+...
T Consensus 821 v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp--------~~~-----~l~~~~~dg~v~vwd~~~ 871 (1249)
T 3sfz_A 821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSP--------YDH-----LAVIALSQYCVELWNIDS 871 (1249)
T ss_dssp EEEEETTTCCEEEEEECSSSSCCCEEEECS--------STT-----EEEEECSSSCEEEEETTT
T ss_pred EEEEEecCCCceeEEcCCCCCceEEEEEcC--------CCC-----EEEEEeCCCeEEEEEcCC
Confidence 233322222222334468999999999999 444 499999999999999553
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=207.63 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=143.1
Q ss_pred ccceeeccccccccccccccCCC--C--cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc------eeeEecccCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPA--T--VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK------ATATYGVLPA 2262 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~a--t--v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk------~l~Tl~vl~g 2262 (2389)
..+|+| +.|.+.++|+...... + .+...|.+++|+|+|.+||+|+.|++|++|++..+. ....+
T Consensus 77 ~~l~s~-s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~----- 150 (354)
T 2pbi_B 77 RRIVSS-SQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV----- 150 (354)
T ss_dssp SEEEEE-ETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE-----
T ss_pred CEEEEE-eCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee-----
Confidence 568888 8899999997632211 1 122356899999999999999999999999986542 22333
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC-CCCEEEEeecCC
Q 000080 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSS 2341 (2389)
Q Consensus 2263 h~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~-DGslLASAG~sS 2341 (2389)
.+|...|++++|+|+|+.|++|+.|++|++||++++ +++.++.+|...|.+++|+|. +|++|||+ +
T Consensus 151 -----~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg---s 217 (354)
T 2pbi_B 151 -----AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-----QLLQSFHGHGADVLCLDLAPSETGNTFVSG---G 217 (354)
T ss_dssp -----EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEECCCSSCCEEEEE---E
T ss_pred -----eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEEcCCCCCeEEEEEEeCCCCCEEEEE---e
Confidence 247789999999999999999999999999999986 467889999999999999874 57899997 4
Q ss_pred CCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2342 NGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.|++|++||+ .++++++.+.+|++.|++++++|+|+.+++-+
T Consensus 218 ~Dg~v~~wd~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 259 (354)
T 2pbi_B 218 CDKKAMVWDM--RSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259 (354)
T ss_dssp TTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCeEEEEEC--CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe
Confidence 8999999998 57888999999999999999999999877643
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=207.79 Aligned_cols=144 Identities=21% Similarity=0.235 Sum_probs=126.0
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|++++|+|||++||+|+.|++|++||+.+++.+.++. ||...|++++|+|||++|++|+.|++|++||+
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~ 194 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ----------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC
Confidence 46999999999999999999999999999999888874 46789999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-------EeecCcEEEEe
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-------TCHEGLYDLFL 2373 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-------~GH~~~V~svA 2373 (2389)
+++ +...++. |...+.+++|+|.+|++||++ +.|++|+|||+ .+++.+..+ .+|.+.|++++
T Consensus 195 ~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~---s~d~~v~iwd~--~~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 195 RTG-----QCSLTLS-IEDGVTTVAVSPGDGKYIAAG---SLDRAVRVWDS--ETGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp TTT-----EEEEEEE-CSSCEEEEEECSTTCCEEEEE---ETTSCEEEEET--TTCCEEEEEC------CCCSSCEEEEE
T ss_pred CCC-----eeEEEEE-cCCCcEEEEEECCCCCEEEEE---cCCCcEEEEEC--CCCcEEEeecccccCCCCCCCCEEEEE
Confidence 986 2344443 667899999999889999997 48999999998 456667666 68999999999
Q ss_pred ecccchhhhccc
Q 000080 2374 PLKLLNFALSKC 2385 (2389)
Q Consensus 2374 ~~~~~~~~~s~~ 2385 (2389)
++|+|++.++-+
T Consensus 264 ~~~~g~~l~s~s 275 (393)
T 1erj_A 264 FTRDGQSVVSGS 275 (393)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 999999887643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=205.52 Aligned_cols=175 Identities=11% Similarity=0.020 Sum_probs=131.9
Q ss_pred ccceeecccccccccccccc----CCCCcC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc---eeeEecccCCC
Q 000080 2193 GIGASALGWETQDDFEDYVD----PPATVE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPAA 2263 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d----~~atv~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk---~l~Tl~vl~gh 2263 (2389)
...|+| +.+...++|+... ...++. .-.|.+++|+|+|++||+|+.|++|++||+.+++ ...++
T Consensus 24 ~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~------ 96 (377)
T 3dwl_C 24 TEFVTT-TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL------ 96 (377)
T ss_dssp SEEECC-CSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC------
T ss_pred CEEEEe-cCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe------
Confidence 456666 6677777777642 223332 2467999999999999999999999999999887 34433
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeee-cCCCeeEEEEecCCCCEEEEeecCCC
Q 000080 2264 NVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC-FSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g-Hs~~V~sVAFSP~DGslLASAG~sS~ 2342 (2389)
.+|...|++++|+|||+.||+|+.|++|++||++++. .......+.+ |...|.+++|+| +|++||++ +.
T Consensus 97 ----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~---~~ 166 (377)
T 3dwl_C 97 ----LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN--DWWVSKHLKRPLRSTILSLDWHP-NNVLLAAG---CA 166 (377)
T ss_dssp ----CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------CCCCEEECSSCCSCEEEEEECT-TSSEEEEE---ES
T ss_pred ----cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc--cceeeeEeecccCCCeEEEEEcC-CCCEEEEE---eC
Confidence 2467899999999999999999999999999999862 1124667777 999999999999 99999997 48
Q ss_pred CCeEEEeeCCC----------------CCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2343 GINVVVWDTLA----------------PPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2343 D~TVrLWD~l~----------------~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|++|++||+.. +.+++++.+ +|.+.|.+++++|+|+++++-+
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999999721 124456667 9999999999999999887643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=202.64 Aligned_cols=202 Identities=11% Similarity=0.070 Sum_probs=140.8
Q ss_pred CCCCCCcceeecCCCCCCeEEEEec--CCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEE
Q 000080 36 APTRSTSTIDWLPDFAGYSWVAYGA--SSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLA 113 (2389)
Q Consensus 36 ap~~~~~ai~wlpD~~G~~~vAYas--g~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIa 113 (2389)
.|..-++.++|+|| | .++|.|+ ....|..| ++.+. +.. ..++ |.. +|.+|+|||| +..++
T Consensus 131 ~~~~~~~~v~fSpD--g-~~la~as~~~d~~i~iw--d~~~~-~~~------~~~~-~~~--~V~~v~fspd---g~~l~ 192 (365)
T 4h5i_A 131 NADDYTKLVYISRE--G-TVAAIASSKVPAIMRII--DPSDL-TEK------FEIE-TRG--EVKDLHFSTD---GKVVA 192 (365)
T ss_dssp CTTCCEEEEEECTT--S-SCEEEEESCSSCEEEEE--ETTTT-EEE------EEEE-CSS--CCCEEEECTT---SSEEE
T ss_pred CcccCEEEEEEcCC--C-CEEEEEECCCCCEEEEe--ECCCC-cEE------EEeC-CCC--ceEEEEEccC---CceEE
Confidence 44445678999999 7 3665555 45788888 65444 222 3344 333 6999999998 44455
Q ss_pred EecCCeEEEEeeCCCCCCCCccceeeEEe-cccceEEEEeecCCCCeEEEEecc------eEEeeccCCcEEEEEEe-ec
Q 000080 114 AASENCIFVFAHDSASSKGSFCWSQNAIL-VQGTKVEAIEWTGSGDGIVAGGME------TVLWKKKNTLWEIAWKF-KE 185 (2389)
Q Consensus 114 ASyDntIRVw~~d~~~~kgd~~W~~~~tL-~hssTV~sIAWSpdG~rLaSggdD------V~IW~~~~s~Wecvwt~-~~ 185 (2389)
+++++++++|+... + ......+. .|...|++++|+|+|+++++++.+ +.+|+.........-.. ..
T Consensus 193 s~s~~~~~~~~~~~----~--~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~ 266 (365)
T 4h5i_A 193 YITGSSLEVISTVT----G--SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT 266 (365)
T ss_dssp EECSSCEEEEETTT----C--CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccceeEEEEEecc----C--cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec
Confidence 56788899988652 1 12222222 378899999999999999988865 55677665555443221 23
Q ss_pred cccceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCcc
Q 000080 186 NYPQNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKR 264 (2389)
Q Consensus 186 ~~~~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~ 264 (2389)
.|...+.+++|||||. +|||+.|.. |.+|.............+|...|++|+|+| ||+.
T Consensus 267 ~~~~~V~~~~~Spdg~~lasgs~D~~------------V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp--------dg~~ 326 (365)
T 4h5i_A 267 NRFKGITSMDVDMKGELAVLASNDNS------------IALVKLKDLSMSKIFKQAHSFAITEVTISP--------DSTY 326 (365)
T ss_dssp SSCSCEEEEEECTTSCEEEEEETTSC------------EEEEETTTTEEEEEETTSSSSCEEEEEECT--------TSCE
T ss_pred CCCCCeEeEEECCCCCceEEEcCCCE------------EEEEECCCCcEEEEecCcccCCEEEEEECC--------CCCE
Confidence 3556788999999999 999998743 555533222222334578999999999999 7777
Q ss_pred ccCceEEeeecCCeEEEEEeec
Q 000080 265 SQRHVLLTCCLDGTVRLWCEMD 286 (2389)
Q Consensus 265 ~~~nILAScSdDgTVRLW~e~d 286 (2389)
|||||.|+|||||++..
T Consensus 327 -----laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 327 -----VASVSAANTIHIIKLPL 343 (365)
T ss_dssp -----EEEEETTSEEEEEECCT
T ss_pred -----EEEEeCCCeEEEEEcCC
Confidence 99999999999999754
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-19 Score=202.40 Aligned_cols=137 Identities=15% Similarity=0.269 Sum_probs=117.7
Q ss_pred eEEEEEE-----cC-CCCeEEEEeCCCcEEEeecCCCc-------eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE
Q 000080 2221 STRAFSS-----HP-LRPFFLVGSSNTHIYLWEFGKDK-------ATATYGVLPAANVPPPYALASISALQFDHYGHRFA 2287 (2389)
Q Consensus 2221 ~VrsVAF-----sP-dG~~LASGS~DgTIRLWDl~tGk-------~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA 2287 (2389)
.|++|+| +| |+++|||||.|++||+||+.+++ +..++ .||...|++|+|+|+|++||
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l----------~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL----------TGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE----------CCCSSCEEEEEECSSTTEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh----------ccCCCceEEEEECCCCCEEE
Confidence 4599999 77 99999999999999999997543 34444 25778999999999999999
Q ss_pred EEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE---e
Q 000080 2288 SAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---C 2364 (2389)
Q Consensus 2288 SgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~---G 2364 (2389)
||+.|++|+|||++++ +.+.++.+|...|.+++|+| +|++|||+| .|++|+|||+. +.+...+. +
T Consensus 93 s~s~D~~v~lwd~~~~-----~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~---~d~~i~~wd~~---~~~~~~~~~~~~ 160 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTG-----TTYKRFVGHQSEVYSVAFSP-DNRQILSAG---AEREIKLWNIL---GECKFSSAEKEN 160 (343)
T ss_dssp EEETTSEEEEEETTSS-----CEEEEEECCCSCEEEEEECS-STTEEEEEE---TTSCEEEEESS---SCEEEECCTTTS
T ss_pred EEcCCCcEEEEECCCC-----cEEEEEcCCCCcEEEEEECC-CCCEEEEEc---CCCEEEEEecc---CCceeeeecccC
Confidence 9999999999999986 46788899999999999999 999999974 89999999983 44444444 8
Q ss_pred ecCcEEEEeecccch
Q 000080 2365 HEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2365 H~~~V~svA~~~~~~ 2379 (2389)
|...|.+++++|++.
T Consensus 161 ~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMK 175 (343)
T ss_dssp CSSCEEEEEECCCCC
T ss_pred CCceeeeeeeccccc
Confidence 999999999999873
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=191.68 Aligned_cols=184 Identities=13% Similarity=0.132 Sum_probs=139.2
Q ss_pred cccceeeccccccccccccccC--CCCc----CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDP--PATV----ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~--~atv----~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
++++|.| -|.+.++|+.... ..++ +...|.+|+|+|+|++|||||.|++|++||+.+++++.++. +|..
T Consensus 36 ~~~lAvg--~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~---~h~~ 110 (318)
T 4ggc_A 36 GNVLAVA--LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT---SHSA 110 (318)
T ss_dssp TSEEEEE--ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSS
T ss_pred CCEEEEE--eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec---Cccc
Confidence 3467766 3778888886422 1111 22457999999999999999999999999999999887764 3331
Q ss_pred C----------------------------------CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccc
Q 000080 2266 P----------------------------------PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2389)
Q Consensus 2266 p----------------------------------~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l 2311 (2389)
. ..+|...+..++|+++|+.|++++.||+|++||++++.. .....
T Consensus 111 ~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~ 189 (318)
T 4ggc_A 111 RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-GWVPL 189 (318)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT-BSCCS
T ss_pred eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc-cccce
Confidence 1 356888999999999999999999999999999987521 00111
Q ss_pred eee--------------------------------------------eecCCCeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2312 ESC--------------------------------------------LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2312 ~tl--------------------------------------------~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
... ..|...+..++|+| ++..+++++ ++.|++|+
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s-g~~d~~i~ 267 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGH-GFAQNQLV 267 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEET-TTTEEEEEE-CTTTCCEE
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecc-cccceEEEE-EcCCCEEE
Confidence 111 22444566777777 566666543 36899999
Q ss_pred EeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2348 VWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2348 LWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|||+ .++++++.|.||++.|++++++|+|++.+|-+
T Consensus 268 iwd~--~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s 303 (318)
T 4ggc_A 268 IWKY--PTMAKVAELKGHTSRVLSLTMSPDGATVASAA 303 (318)
T ss_dssp EEET--TTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEC--CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 9998 57888999999999999999999999988743
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-19 Score=204.10 Aligned_cols=187 Identities=18% Similarity=0.145 Sum_probs=142.1
Q ss_pred ccccccccccceeeccccccccccccccCC----CCc--CceeEEEEEEcCC--CCeEEEEeCCCcEEEeecCCCceeeE
Q 000080 2185 AFGIPGYAGIGASALGWETQDDFEDYVDPP----ATV--ENISTRAFSSHPL--RPFFLVGSSNTHIYLWEFGKDKATAT 2256 (2389)
Q Consensus 2185 ~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~----atv--~ni~VrsVAFsPd--G~~LASGS~DgTIRLWDl~tGk~l~T 2256 (2389)
+|.-+....++|++ ++|.+.++|+..... .+. +.-.|++|+|+|+ |.+||+|+.|++|++||+.++.....
T Consensus 64 ~~~~~~~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 64 AWAHPMYGNILASC-SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EECCGGGSSCEEEE-ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EeCCCCCCCEEEEE-ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 34333334678888 899999999875321 111 1235699999998 88999999999999999987643221
Q ss_pred ecccCCCCCCCCCCCCCEEEEEECCC-----------------CCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCC
Q 000080 2257 YGVLPAANVPPPYALASISALQFDHY-----------------GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319 (2389)
Q Consensus 2257 l~vl~gh~~p~~GH~~~V~sVaFSPD-----------------G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~ 2319 (2389)
...+ .+|...|.+++|+|+ |++||+|+.|++|+|||++.++ ..++..++.+|..
T Consensus 143 ~~~~-------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 143 KKIN-------NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG--QWKEEQKLEAHSD 213 (316)
T ss_dssp CCBT-------TSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS--CEEEEECCBCCSS
T ss_pred eeee-------ccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC--ccceeeecccCCC
Confidence 1111 356788999999998 5799999999999999997542 1235677899999
Q ss_pred CeeEEEEecCCC----CEEEEeecCCCCCeEEEeeCCCCC-CC-ceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2320 HAMDVSYITSSG----SVIAAAGHSSNGINVVVWDTLAPP-TS-SRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2320 ~V~sVAFSP~DG----slLASAG~sS~D~TVrLWD~l~~t-g~-~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.|++|+|+| ++ ++|||+ +.|++|+|||+.... +. ..+.+.+|.+.|++++++|+|++.++-+
T Consensus 214 ~V~~v~~sp-~~~~~~~~las~---s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~ 281 (316)
T 3bg1_A 214 WVRDVAWAP-SIGLPTSTIASC---SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSG 281 (316)
T ss_dssp CEEEEECCC-CSSCSCCEEEEE---ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEE
T ss_pred ceEEEEecC-CCCCCCceEEEE---cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEc
Confidence 999999999 65 899997 589999999974211 12 2456788999999999999999877643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-19 Score=212.43 Aligned_cols=144 Identities=18% Similarity=0.217 Sum_probs=119.4
Q ss_pred eEEEEEEcCC-CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~DgTVkLW 2298 (2389)
.|.+|+|||+ +.+||+|+.||+|+|||+.+++....+. ..||.+.|++|+|+| ||++|+|||.||+|++|
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 4799999994 6699999999999999998887655443 136789999999998 68999999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
|++++ ..+.+.....+...+.+++|+| +|++||+| +.|++|+|||+ .++.+..+.+|.+.|++++++|++
T Consensus 193 d~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g---~~dg~i~~wd~---~~~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 193 DFKGN---ILRVFASSDTINIWFCSLDVSA-SSRMVVTG---DNVGNVILLNM---DGKELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp ETTSC---EEEEEECCSSCSCCCCCEEEET-TTTEEEEE---CSSSBEEEEES---SSCBCCCSBCCSSCEEEEEECTTC
T ss_pred eccCC---ceeEEeccCCCCccEEEEEECC-CCCEEEEE---eCCCcEeeecc---CcceeEEEecccceEEeeeecCCC
Confidence 99864 1123333334555678999999 99999996 58999999997 467788999999999999999999
Q ss_pred hhhh
Q 000080 2379 NFAL 2382 (2389)
Q Consensus 2379 ~~~~ 2382 (2389)
+..|
T Consensus 263 ~~~~ 266 (435)
T 4e54_B 263 DWFL 266 (435)
T ss_dssp SSEE
T ss_pred ceEE
Confidence 8654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.7e-19 Score=206.04 Aligned_cols=176 Identities=13% Similarity=0.183 Sum_probs=140.0
Q ss_pred ccceeeccccccccccccccC---------CCCcC--ceeEEEEEEcCCC-CeEEEEeCCCcEEEeecCCCceeeEeccc
Q 000080 2193 GIGASALGWETQDDFEDYVDP---------PATVE--NISTRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVL 2260 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~---------~atv~--ni~VrsVAFsPdG-~~LASGS~DgTIRLWDl~tGk~l~Tl~vl 2260 (2389)
...|+| ++|...++|+.... ...+. .-.|.+++|+|++ ..|+|||.|++|++||+.+|+++.++..
T Consensus 121 ~~las~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~- 198 (380)
T 3iz6_a 121 QSVACG-GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS- 198 (380)
T ss_dssp SEEEEC-CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC-
T ss_pred CEEEEe-eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec-
Confidence 345666 67777777765311 01111 1245788999985 4799999999999999999999888741
Q ss_pred CCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeec
Q 000080 2261 PAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH 2339 (2389)
Q Consensus 2261 ~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~ 2339 (2389)
. .+.||...|.+++|+| +++.|+||+.||+|++||++..+ +++.++.+|.+.|++|+|+| +|++|||+
T Consensus 199 --~--~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~~~~~h~~~v~~v~~~p-~~~~l~s~-- 267 (380)
T 3iz6_a 199 --E--FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVRTYHGHEGDINSVKFFP-DGQRFGTG-- 267 (380)
T ss_dssp --C--SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCEEECCCSSCCCEEEECT-TSSEEEEE--
T ss_pred --c--cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceEEECCcCCCeEEEEEec-CCCeEEEE--
Confidence 1 1247889999999987 89999999999999999998643 56788899999999999999 99999997
Q ss_pred CCCCCeEEEeeCCCCCCCceEEEEeecC-------cEEEEeecccchhhhcc
Q 000080 2340 SSNGINVVVWDTLAPPTSSRASITCHEG-------LYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2340 sS~D~TVrLWD~l~~tg~~v~sL~GH~~-------~V~svA~~~~~~~~~s~ 2384 (2389)
+.|++|+|||+ .++++++.+..|.. .|++++++|+|+++++-
T Consensus 268 -s~D~~i~lwd~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 268 -SDDGTCRLFDM--RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp -CSSSCEEEEET--TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE
T ss_pred -cCCCeEEEEEC--CCCcEEEEecccccccccccCceEEEEECCCCCEEEEE
Confidence 59999999998 46777888876543 48999999999988764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=191.56 Aligned_cols=180 Identities=13% Similarity=0.059 Sum_probs=141.3
Q ss_pred ccccceeeccccccccccccccCCC------Cc--CceeEEEEEEcC--CCCeEEEEeCCCcEEEeecCCC---------
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPPA------TV--ENISTRAFSSHP--LRPFFLVGSSNTHIYLWEFGKD--------- 2251 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~a------tv--~ni~VrsVAFsP--dG~~LASGS~DgTIRLWDl~tG--------- 2251 (2389)
....+|++ +.|...++|+...... ++ +.-.|.+++|+| |+++|++|+.|++|++||+.++
T Consensus 22 ~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 100 (351)
T 3f3f_A 22 YGRHVATC-SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRW 100 (351)
T ss_dssp SSSEEEEE-ETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred CCCEEEEe-eCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence 34467777 7888888888753211 11 224679999999 6999999999999999999887
Q ss_pred ceeeEecccCCCCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEEEeeCCCCCcc-----------------------
Q 000080 2252 KATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVCTWQLEVGGRS----------------------- 2306 (2389)
Q Consensus 2252 k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVkLWDl~tggrs----------------------- 2306 (2389)
+.+.++. +|...|++++|+|+ |+.|++|+.||+|++||++++...
T Consensus 101 ~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 101 NKLCTLN----------DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp EEEEEEC----------CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred ceeeeec----------ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 4455552 46788999999999 999999999999999999875210
Q ss_pred --------------------------------CcccceeeeecCCCeeEEEEecCCC----CEEEEeecCCCCCeEEEee
Q 000080 2307 --------------------------------NVRPMESCLCFSSHAMDVSYITSSG----SVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2307 --------------------------------~~k~l~tl~gHs~~V~sVAFSP~DG----slLASAG~sS~D~TVrLWD 2350 (2389)
....+..+.+|...|.+++|+| +| ++|||+ +.|++|+|||
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p-~~~~~~~~l~s~---~~dg~i~iwd 246 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP-SIGRWYQLIATG---CKDGRIRIFK 246 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC-CSSCSSEEEEEE---ETTSCEEEEE
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC-CCCCcceEEEEE---cCCCeEEEEe
Confidence 0012556778999999999999 77 799987 4899999999
Q ss_pred CCCC--------------------------------------------CCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2351 TLAP--------------------------------------------PTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2351 ~l~~--------------------------------------------tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+... +.+.+..+.+|.+.|++++++|+|++.++-+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 325 (351)
T 3f3f_A 247 ITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAG 325 (351)
T ss_dssp EEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEE
T ss_pred CCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEec
Confidence 8421 1145778899999999999999999887754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=207.09 Aligned_cols=175 Identities=10% Similarity=0.052 Sum_probs=138.1
Q ss_pred ccccceeeccccccccccccccC----CCCcC--ceeEEEEEEcC--CCCeEEEEeCCCcEEEeecCCCc--eeeEeccc
Q 000080 2191 YAGIGASALGWETQDDFEDYVDP----PATVE--NISTRAFSSHP--LRPFFLVGSSNTHIYLWEFGKDK--ATATYGVL 2260 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~----~atv~--ni~VrsVAFsP--dG~~LASGS~DgTIRLWDl~tGk--~l~Tl~vl 2260 (2389)
.+.++|+| ++|.+.++|+.... ..++. .-.|++|+|+| +|++|||||.|++|++||+.+++ ++.++.
T Consensus 24 ~g~~lasg-s~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-- 100 (316)
T 3bg1_A 24 YGTRLATC-SSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA-- 100 (316)
T ss_dssp GGCEEEEE-ETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC--
T ss_pred CCCEEEEE-eCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc--
Confidence 34578899 89999999987532 12221 24679999976 48999999999999999998875 444442
Q ss_pred CCCCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCC--------
Q 000080 2261 PAANVPPPYALASISALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS-------- 2330 (2389)
Q Consensus 2261 ~gh~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D-------- 2330 (2389)
+|...|++|+|+|+ |+.||+|+.|++|++||++.++ .......+.+|...|.+++|+| +
T Consensus 101 --------~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~ 169 (316)
T 3bg1_A 101 --------GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG--QWEVKKINNAHTIGCNAVSWAP-AVVPGSLID 169 (316)
T ss_dssp --------CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS--CEEECCBTTSSSSCBCCCEECC-CCCC-----
T ss_pred --------CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC--CcceeeeeccccCCcceEEEcc-ccCCccccc
Confidence 56789999999998 8999999999999999998752 1122455678999999999999 5
Q ss_pred ---------CCEEEEeecCCCCCeEEEeeCCCCCC--CceEEEEeecCcEEEEeecccc----hhhhc
Q 000080 2331 ---------GSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEGLYDLFLPLKLL----NFALS 2383 (2389)
Q Consensus 2331 ---------GslLASAG~sS~D~TVrLWD~l~~tg--~~v~sL~GH~~~V~svA~~~~~----~~~~s 2383 (2389)
|++|||+ +.|++|+|||+. ..+ ++++.|.+|.+.|++++++|++ +.++|
T Consensus 170 ~~~~~~~~~~~~l~sg---s~D~~v~lWd~~-~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las 233 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASG---GCDNLIKLWKEE-EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS 233 (316)
T ss_dssp -CCSCCCCCCCBEECC---BTTSBCCEEEEC-TTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred cccccCccccceEEEe---cCCCeEEEEEeC-CCCccceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence 5789986 589999999983 111 3577899999999999999987 55554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-18 Score=201.73 Aligned_cols=187 Identities=14% Similarity=0.181 Sum_probs=145.0
Q ss_pred cccceeeccccccccccccccCC--CC--c--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPP--AT--V--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~--at--v--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
+.++|-|+ |.+.++|+..... .. . ++..|.+|+|+|||++||+|+.|++|+|||+.+++++.++. +|..
T Consensus 116 ~n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~---~h~~ 190 (420)
T 4gga_A 116 GNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT---SHSA 190 (420)
T ss_dssp TSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSS
T ss_pred CCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe---CCCC
Confidence 45777663 7889999874221 11 1 12457999999999999999999999999999999887764 3431
Q ss_pred C----------------------------------CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccc
Q 000080 2266 P----------------------------------PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2389)
Q Consensus 2266 p----------------------------------~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l 2311 (2389)
. ..+|...|..+.++|+|+.+++++.||+|++||+.++. .....+
T Consensus 191 ~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~-~~~~~~ 269 (420)
T 4gga_A 191 RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-GGWVPL 269 (420)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS-SCSCCS
T ss_pred ceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc-ccceee
Confidence 1 35788999999999999999999999999999998863 222456
Q ss_pred eeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC---------------------------------------
Q 000080 2312 ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL--------------------------------------- 2352 (2389)
Q Consensus 2312 ~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l--------------------------------------- 2352 (2389)
.....|...|.+++|+|.++.++|++| ++.|++|+|||+.
T Consensus 270 ~~~~~~~~~V~~~~~~p~~~~~la~~~-gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEE-CTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred eeecccCCceeeeeeCCCcccEEEEEe-ecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEE
Confidence 677788888888888887677777654 4567777777641
Q ss_pred --CCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2353 --APPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2353 --~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.+++++++.|.||++.|++++++|+|++++|-+
T Consensus 349 wd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 349 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 134566788999999999999999999988753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.3e-19 Score=209.48 Aligned_cols=179 Identities=12% Similarity=0.003 Sum_probs=138.8
Q ss_pred ccccccceeeccccccccccccccCC--CCc----CceeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccC
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPP--ATV----ENISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLP 2261 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~--atv----~ni~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~ 2261 (2389)
|-...++|+| +.|...++|++.... ..+ +.-.|.+|+|+| ++.+|+|||.|++|++||+.++.. .++. .
T Consensus 129 P~~~~~lasG-s~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~--~ 204 (435)
T 4e54_B 129 PTHPSTVAVG-SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFA--S 204 (435)
T ss_dssp SSCTTCEEEE-ETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEE--C
T ss_pred CCCCCEEEEE-eCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEe--c
Confidence 3445688999 899999999874221 111 123679999998 689999999999999999975544 4443 1
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC
Q 000080 2262 AANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS 2341 (2389)
Q Consensus 2262 gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS 2341 (2389)
.| .+...|.+++|+|||++||+|+.||+|++||++. +.+.++.+|...|.+++|+|.+..+||++ +
T Consensus 205 ~~-----~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~---s 270 (435)
T 4e54_B 205 SD-----TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG------KELWNLRMHKKKVTHVALNPCCDWFLATA---S 270 (435)
T ss_dssp CS-----SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS------CBCCCSBCCSSCEEEEEECTTCSSEEEEE---E
T ss_pred cC-----CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc------ceeEEEecccceEEeeeecCCCceEEEEe---c
Confidence 22 2446789999999999999999999999999974 35677889999999999999333478886 4
Q ss_pred CCCeEEEeeCCCCCCC-ceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2342 NGINVVVWDTLAPPTS-SRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~-~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.|++|+|||+...... .+....+|.+.|++++++|+|++.++-+
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 8999999998422211 2344578999999999999999988755
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-19 Score=211.20 Aligned_cols=167 Identities=8% Similarity=0.003 Sum_probs=125.8
Q ss_pred ccccccccccccccCCCC-----cCceeEEEEEEcC---CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC
Q 000080 2199 LGWETQDDFEDYVDPPAT-----VENISTRAFSSHP---LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA 2270 (2389)
Q Consensus 2199 ~~~d~~~~~~~~~d~~at-----v~ni~VrsVAFsP---dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH 2270 (2389)
-+.+.+.+++++...-+. .+...++.++|+| ++.+|||||.|+||||||+.+|++++++. +|. .|
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~---g~~----~~ 225 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH---IDD----SY 225 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE---CCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc---CCC----cc
Confidence 468999999998432222 2223557789999 78999999999999999999999999985 331 23
Q ss_pred CCCEEEEEECCCCCEE------------EEEeCCCcEEEeeCCCCCccCcccceee-----eecCCCeeEEEEecCCCCE
Q 000080 2271 LASISALQFDHYGHRF------------ASAALDGTVCTWQLEVGGRSNVRPMESC-----LCFSSHAMDVSYITSSGSV 2333 (2389)
Q Consensus 2271 ~~~V~sVaFSPDG~~L------------ASgS~DgTVkLWDl~tggrs~~k~l~tl-----~gHs~~V~sVAFSP~DGsl 2333 (2389)
...|.+++|||||+++ |||+.|+||++||+.++ +.+..+ .||.....+..++ |.+
T Consensus 226 v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-----k~l~v~~~~~p~Gh~~~~lsg~~s---g~~ 297 (356)
T 2w18_A 226 QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-----LSVGVMLYCLPPGQAGRFLEGDVK---DHC 297 (356)
T ss_dssp -CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT-----EEEEEEEECCCTTCCCCEEEEEEE---TTE
T ss_pred eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-----EEEEEEEeeccCCCcceeEccccC---CCE
Confidence 4679999999999987 77999999999999986 233333 3777665544444 688
Q ss_pred EEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEE-EEeecccchhhhccc
Q 000080 2334 IAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYD-LFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2334 LASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~-svA~~~~~~~~~s~~ 2385 (2389)
+|++ +.|+||||||+ .+++++++|.+|.+.+. +++++|+|++.+|-+
T Consensus 298 lASg---S~DgTIkIWDl--~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 298 AAAI---LTSGTIAIWDL--LLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp EEEE---ETTSCEEEEET--TTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred EEEE---cCCCcEEEEEC--CCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 9986 58999999998 68899999999998876 599999999988755
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-18 Score=191.84 Aligned_cols=176 Identities=10% Similarity=0.100 Sum_probs=141.9
Q ss_pred cccceeeccccccccccccccCCCCc------CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPPATV------ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~atv------~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
...+|+| +.|...++|+.......+ +.-.|.+++|+|++++|++|+.|++|++||+.+++.+...
T Consensus 54 g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------- 124 (368)
T 3mmy_A 54 GNFLIAG-SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-------- 124 (368)
T ss_dssp SEEEEEE-ETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------
T ss_pred ceEEEEE-CCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec--------
Confidence 3677888 778888888875311111 1246799999999999999999999999999999877654
Q ss_pred CCCCCCCCEEEEEE--CCCCCEEEEEeCCCcEEEeeCCCCCccC------------------------------------
Q 000080 2266 PPPYALASISALQF--DHYGHRFASAALDGTVCTWQLEVGGRSN------------------------------------ 2307 (2389)
Q Consensus 2266 p~~GH~~~V~sVaF--SPDG~~LASgS~DgTVkLWDl~tggrs~------------------------------------ 2307 (2389)
+|...|++++| +|+|+.|++|+.||+|++||++++....
T Consensus 125 ---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 125 ---QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQP 201 (368)
T ss_dssp ---ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSC
T ss_pred ---cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecccc
Confidence 25688999999 9999999999999999999998752000
Q ss_pred -------------------------------------------------cccceeeeecCC------------CeeEEEE
Q 000080 2308 -------------------------------------------------VRPMESCLCFSS------------HAMDVSY 2326 (2389)
Q Consensus 2308 -------------------------------------------------~k~l~tl~gHs~------------~V~sVAF 2326 (2389)
......+.+|.. .|.+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (368)
T 3mmy_A 202 SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF 281 (368)
T ss_dssp EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence 012234455554 6999999
Q ss_pred ecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2327 ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2327 SP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+| +|++||++| .|++|+|||+ .++++++.+.+|.+.|++++++|+|++.++-.
T Consensus 282 sp-~~~~l~s~~---~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 282 HP-VHGTLATVG---SDGRFSFWDK--DARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp CT-TTCCEEEEE---TTSCEEEEET--TTTEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred ec-CCCEEEEEc---cCCeEEEEEC--CCCcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence 99 999999974 8999999998 46788999999999999999999999987654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=200.69 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=124.5
Q ss_pred ceeeccccccccccccc--cCCCCcCc-eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCC
Q 000080 2195 GASALGWETQDDFEDYV--DPPATVEN-ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYAL 2271 (2389)
Q Consensus 2195 ~Asg~~~d~~~~~~~~~--d~~atv~n-i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~ 2271 (2389)
+|++ +.|...++|+.. .....+.. -.+...+|+|+|++||+|+.|++|++||+.+++++..+. +|.
T Consensus 71 l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~h~ 139 (420)
T 3vl1_A 71 LYKA-RLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ----------AHV 139 (420)
T ss_dssp EEEE-EETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT----------SSS
T ss_pred EEEE-EcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc----------ccc
Confidence 4444 455566666553 12222222 123455799999999999999999999999888877653 467
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2272 ~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
..|++++|+|||+.||+|+.||+|++||++++ +.+.++.+|...|.+++|+| +|++||++ +.|++|++||+
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~-~~~~l~s~---~~d~~v~iwd~ 210 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIID-RGRNVLSA---SLDGTIRLWEC 210 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----CCCEEEECCSSCEEEEEEET-TTTEEEEE---ETTSCEEEEET
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----cCceEEcCCCCcEEEEEEcC-CCCEEEEE---cCCCcEEEeEC
Confidence 89999999999999999999999999999986 35678899999999999999 99999997 48999999998
Q ss_pred CCCCCCceEEEEe---ecCcEEEEee
Q 000080 2352 LAPPTSSRASITC---HEGLYDLFLP 2374 (2389)
Q Consensus 2352 l~~tg~~v~sL~G---H~~~V~svA~ 2374 (2389)
.++++++.+.+ |...|.++++
T Consensus 211 --~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 211 --GTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp --TTTEEEEEECBTTBTTCCEEEEEE
T ss_pred --CCCceeEEeecCCCCCCCccEEEE
Confidence 46777888875 4455555554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=200.73 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=131.1
Q ss_pred cceeeccccccccccccccC--CCC--cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCC
Q 000080 2194 IGASALGWETQDDFEDYVDP--PAT--VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPY 2269 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~--~at--v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~G 2269 (2389)
++|+| +.+...++|+.... ... -+.-.|++++|+|++++|++|+.|++|++||+.+++++.++. +
T Consensus 111 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----------~ 179 (420)
T 3vl1_A 111 RFILG-TTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI----------G 179 (420)
T ss_dssp EEEEE-ETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE----------C
T ss_pred EEEEE-ECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc----------C
Confidence 45555 55666666654311 111 122357999999999999999999999999999999988874 4
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeee---cCCCeeEEE---------------------
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC---FSSHAMDVS--------------------- 2325 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g---Hs~~V~sVA--------------------- 2325 (2389)
|...|++++|+|||+.||+|+.||+|++||++++ +++..+.+ |...|.+++
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-----TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-----EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-----ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 6789999999999999999999999999999986 34445443 445555555
Q ss_pred EecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecCcEEEEeecccch-hhhccc
Q 000080 2326 YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGLYDLFLPLKLLN-FALSKC 2385 (2389)
Q Consensus 2326 FSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~~V~svA~~~~~~-~~~s~~ 2385 (2389)
|+| +|++||++ +.|++|+|||+ .+++.+..+ .+|...|++++++|+|+ ++++-+
T Consensus 255 ~s~-~~~~l~~~---~~dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 255 FGT-YGKYVIAG---HVSGVITVHNV--FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp SSC-TTEEEEEE---ETTSCEEEEET--TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred EcC-CCCEEEEE---cCCCeEEEEEC--CCCceeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence 467 89999986 48999999998 456666655 55899999999999998 666543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=227.85 Aligned_cols=167 Identities=9% Similarity=0.065 Sum_probs=132.0
Q ss_pred ccccceeeccccccccccccccCCC-C--------------cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc---
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPPA-T--------------VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--- 2252 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~a-t--------------v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk--- 2252 (2389)
...++|+| ++|.+.|+|++..... + -+...|++|+|+|||++||+|+.|++|||||+.+++
T Consensus 446 dg~~laSg-s~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~ 524 (902)
T 2oaj_A 446 YGTAFITG-HSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS 524 (902)
T ss_dssp EEEEEEEE-ETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred cCcEEEEe-cCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence 44589999 9999999999864321 1 122468999999999999999999999999998763
Q ss_pred ------------------------------------------eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe
Q 000080 2253 ------------------------------------------ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2389)
Q Consensus 2253 ------------------------------------------~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS 2290 (2389)
++.++ .+|.+.|++|+||||| +||+|+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l----------~~h~~~V~svafSpdG-~lAsgs 593 (902)
T 2oaj_A 525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV----------HANKGKTSAINNSNIG-FVGIAY 593 (902)
T ss_dssp -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE----------CCCSCSEEEEEECBTS-EEEEEE
T ss_pred ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE----------EcCCCcEEEEEecCCc-EEEEEe
Confidence 23444 2467999999999999 999999
Q ss_pred CCCcEEEeeCCCCCccCcc--cceeee-ecCCCeeEEEEe-----cCCC---CEEEEeecCCCCCeEEEeeCCC-CCCCc
Q 000080 2291 LDGTVCTWQLEVGGRSNVR--PMESCL-CFSSHAMDVSYI-----TSSG---SVIAAAGHSSNGINVVVWDTLA-PPTSS 2358 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k--~l~tl~-gHs~~V~sVAFS-----P~DG---slLASAG~sS~D~TVrLWD~l~-~tg~~ 2358 (2389)
.|++|+|||++++. .+. .+..+. +|+..|++|+|+ | || ++||+| +.|++|++||++. .+|++
T Consensus 594 ~D~tv~lwd~~~~~--~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sg---s~D~tv~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 594 AAGSLMLIDRRGPA--IIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCG---TDMGEVITYKILPASGGKF 667 (902)
T ss_dssp TTSEEEEEETTTTE--EEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEE---ETTSEEEEEEEEECGGGCE
T ss_pred CCCcEEEEECCCCe--EEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEE---ecCCcEEEEEEecCCCCcE
Confidence 99999999998641 100 112343 899999999999 8 64 899997 5999999999732 36778
Q ss_pred eEEEEeec-----CcEEEEeec
Q 000080 2359 RASITCHE-----GLYDLFLPL 2375 (2389)
Q Consensus 2359 v~sL~GH~-----~~V~svA~~ 2375 (2389)
+..|.+|. +.|.++++.
T Consensus 668 ~~~~~~~~~~~~~~~v~~i~~~ 689 (902)
T 2oaj_A 668 DVQLMDITNVTSKGPIHKIDAF 689 (902)
T ss_dssp EEEEEEEEECCSSCCCCEEEEE
T ss_pred EEEecCceecCCCCceEEEEeE
Confidence 89999996 778888753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-18 Score=186.24 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=100.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc----eeeEecccCCCCCCCCCCCCCEEEEEECC--CCCEEEEEeCCCc
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK----ATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGT 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk----~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP--DG~~LASgS~DgT 2294 (2389)
.|.+++|+|+|++||+|+.||+|++||+.++. .+.++. +|...|++|+|+| ||++||+|+.||+
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR----------AHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE----------CCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec----------cCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 46999999999999999999999999998774 444443 4678999999999 7999999999999
Q ss_pred EEEeeCCCCCc----cCcccceeeeecCCCeeEEEEecCC--CCEEEEeecCCCCCeEEEeeCC
Q 000080 2295 VCTWQLEVGGR----SNVRPMESCLCFSSHAMDVSYITSS--GSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2295 VkLWDl~tggr----s~~k~l~tl~gHs~~V~sVAFSP~D--GslLASAG~sS~D~TVrLWD~l 2352 (2389)
|++||++++.. ...+++..+.+|...|.+++|+| + |++||++ +.|++|+|||+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~---~~dg~v~iwd~~ 142 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACL---GNDGILRLYDAL 142 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEE---ETTCEEEEEECS
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEe---cCCCcEEEecCC
Confidence 99999987521 01134677889999999999999 7 9999997 489999999973
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=197.74 Aligned_cols=143 Identities=14% Similarity=0.181 Sum_probs=125.9
Q ss_pred eeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCC-------ceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEe
Q 000080 2220 ISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKD-------KATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAA 2290 (2389)
Q Consensus 2220 i~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tG-------k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS 2290 (2389)
-.|.+++|+| ++++||+|+.||+|++||+.++ +++.++. +|...|++|+|+|+| +.|++|+
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE----------GHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE----------CCSSCEEEEEECSSBTTEEEEEE
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec----------CCCCeEEEEEECcCCCCEEEEEc
Confidence 3579999999 9999999999999999999988 4555653 467899999999998 7999999
Q ss_pred CCCcEEEeeCCCCCccCcccceee--eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecC
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESC--LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEG 2367 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl--~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~ 2367 (2389)
.||+|++||++++ ++..++ .+|...|.+++|+| +|++||++ +.|++|+|||+ .+++.++.+ .+|.+
T Consensus 152 ~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~---~~d~~i~iwd~--~~~~~~~~~~~~~~~ 220 (402)
T 2aq5_A 152 CDNVILVWDVGTG-----AAVLTLGPDVHPDTIYSVDWSR-DGALICTS---CRDKRVRVIEP--RKGTVVAEKDRPHEG 220 (402)
T ss_dssp TTSCEEEEETTTT-----EEEEEECTTTCCSCEEEEEECT-TSSCEEEE---ETTSEEEEEET--TTTEEEEEEECSSCS
T ss_pred CCCEEEEEECCCC-----CccEEEecCCCCCceEEEEECC-CCCEEEEE---ecCCcEEEEeC--CCCceeeeeccCCCC
Confidence 9999999999986 466777 78999999999999 99999997 48999999998 466778888 79988
Q ss_pred c-EEEEeecccchhhhc
Q 000080 2368 L-YDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2368 ~-V~svA~~~~~~~~~s 2383 (2389)
. +.+++++++|+++.+
T Consensus 221 ~~~~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 221 TRPVHAVFVSEGKILTT 237 (402)
T ss_dssp SSCCEEEECSTTEEEEE
T ss_pred CcceEEEEcCCCcEEEE
Confidence 7 899999999988765
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=202.31 Aligned_cols=182 Identities=10% Similarity=-0.008 Sum_probs=131.7
Q ss_pred ccccccceeeccccccccccccccCC-------CCcC--ceeEEEEEEcC--------CCCeEEEEeCCCcEEEeecCCC
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPP-------ATVE--NISTRAFSSHP--------LRPFFLVGSSNTHIYLWEFGKD 2251 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~-------atv~--ni~VrsVAFsP--------dG~~LASGS~DgTIRLWDl~tG 2251 (2389)
+-...++|++ +.|.+.++|+..... .++. .-.|.+|+|+| ||++|||||.|++|||||+.++
T Consensus 98 ~~~~~~las~-~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 98 PVYSLFLACV-CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CEEEEEEEEE-ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred CCCCCEEEEE-eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 3344568888 899999999764221 1121 23579999998 8999999999999999999888
Q ss_pred ceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeCCCCCccC--------------------ccc
Q 000080 2252 KATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSN--------------------VRP 2310 (2389)
Q Consensus 2252 k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl~tggrs~--------------------~k~ 2310 (2389)
.++.++. +|...|.+|+|+|+| ++||+|+.||+|++||++++.... ...
T Consensus 177 ~~~~~~~----------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 177 GPILAGY----------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEE----------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred ceeeeec----------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 8766653 255889999999998 589999999999999998862100 000
Q ss_pred ceeeeecCCCeeEEEEecCCCCEEEEeec---------------------------------------------------
Q 000080 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGH--------------------------------------------------- 2339 (2389)
Q Consensus 2311 l~tl~gHs~~V~sVAFSP~DGslLASAG~--------------------------------------------------- 2339 (2389)
.....+|...|.+++|+++||+.|++++.
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 11234677777778777446666554310
Q ss_pred --------CCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2340 --------SSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2340 --------sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
++.|++|+|||+ .+++++..+.+|...|++|+++|+|+...+
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~--~~~~~~~~~~~~~~~V~svafspdG~~LA~ 376 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINT--YEKDSNSIPIQLGMPIVDFCWHQDGSHLAI 376 (393)
T ss_dssp CTTEEEEEETTTTEEEEEET--TCTTCCEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEECCCCEEEEEEC--CCCcEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 145677777776 456677788889999999999999998654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=187.38 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=137.9
Q ss_pred cccceeeccccccccccccccCC----CCc--CceeEEEEEEcCC--CCeEEEEeCCCcEEEeecCCCceeeEecccCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPP----ATV--ENISTRAFSSHPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA 2263 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~----atv--~ni~VrsVAFsPd--G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh 2263 (2389)
...+|++ +.|...++|+..... ... +.-.|.+++|+|+ +++|++|+.|++|++||+.++....... +
T Consensus 69 ~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~--- 143 (379)
T 3jrp_A 69 GTILASC-SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-I--- 143 (379)
T ss_dssp CSEEEEE-ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE-E---
T ss_pred CCEEEEe-ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE-e---
Confidence 4566777 777788888764321 111 2246799999999 9999999999999999998885433322 1
Q ss_pred CCCCCCCCCCEEEEEECC-------------CCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCC
Q 000080 2264 NVPPPYALASISALQFDH-------------YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS 2330 (2389)
Q Consensus 2264 ~~p~~GH~~~V~sVaFSP-------------DG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D 2330 (2389)
.+|...|++++|+| ||+.|++|+.||+|++||++++.. .......+.+|...|.+++|+| +
T Consensus 144 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v~~~~~sp-~ 217 (379)
T 3jrp_A 144 ----DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSP-T 217 (379)
T ss_dssp ----ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECC-C
T ss_pred ----cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-ceeeEEEEecccCcEeEEEECC-C
Confidence 14568899999999 799999999999999999987631 1234567889999999999999 7
Q ss_pred ---CCEEEEeecCCCCCeEEEeeCCCCCCCceEE---EEeecCcEEEEeecccchhhhccc
Q 000080 2331 ---GSVIAAAGHSSNGINVVVWDTLAPPTSSRAS---ITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2331 ---GslLASAG~sS~D~TVrLWD~l~~tg~~v~s---L~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|++||++ +.|++|+|||+.......... ...|...|++++++|+|++.++-+
T Consensus 218 ~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 218 VLLRSYLASV---SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp CSSSEEEEEE---ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred CCCCCeEEEE---eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 8999997 489999999984222122222 244999999999999999887643
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=214.89 Aligned_cols=177 Identities=9% Similarity=-0.023 Sum_probs=129.8
Q ss_pred cceeeccccccccccccccCCC------Cc--CceeEEEEEEcCC------CCeEEEEeCCCcEEEeecCCCceee--Ee
Q 000080 2194 IGASALGWETQDDFEDYVDPPA------TV--ENISTRAFSSHPL------RPFFLVGSSNTHIYLWEFGKDKATA--TY 2257 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~~a------tv--~ni~VrsVAFsPd------G~~LASGS~DgTIRLWDl~tGk~l~--Tl 2257 (2389)
+.|++ ++|.+.++|++..... ++ +...|++|+|+|+ +.+|||||.||+|||||+.++++.. .+
T Consensus 175 ~laS~-s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 175 MFDKE-KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhccC-CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 45777 8888899998743211 11 1235799999997 5799999999999999998775320 00
Q ss_pred cccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEE--EEecCCC-CEE
Q 000080 2258 GVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSG-SVI 2334 (2389)
Q Consensus 2258 ~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sV--AFSP~DG-slL 2334 (2389)
.. ........||...|++|+|+|++ .||+|+.||+|+|||++++. .+...+.+|...|++| +|+| +| ++|
T Consensus 254 ~~-~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~----~~~~~~~~H~~~V~sv~~~~s~-~g~~~l 326 (524)
T 2j04_B 254 MC-EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE----VPSFYDQVHDSYILSVSTAYSD-FEDTVV 326 (524)
T ss_dssp CC-CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS----SCSEEEECSSSCEEEEEEECCT-TSCCEE
T ss_pred ee-cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC----CceEEeecccccEEEEEEEcCC-CCCeEE
Confidence 00 00000013577899999999975 89999999999999999763 4667789999999999 5666 88 899
Q ss_pred EEeecCCCCCeEEEeeCCCCCCCceEEEEeecC--cEEEEeecccchhhhc
Q 000080 2335 AAAGHSSNGINVVVWDTLAPPTSSRASITCHEG--LYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2335 ASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~--~V~svA~~~~~~~~~s 2383 (2389)
||+ |.|++|||||+ .++++++.+.+|.. .|.+++++|+|...++
T Consensus 327 aS~---S~D~tvklWD~--~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s 372 (524)
T 2j04_B 327 STV---AVDGYFYIFNP--KDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY 372 (524)
T ss_dssp EEE---ETTSEEEEECG--GGHHHHCEEEEECSCCSCCCEEEETTTTEEEE
T ss_pred EEe---ccCCeEEEEEC--CCCCcccccccccccCcccceEeCCCcCeEEE
Confidence 997 58999999998 45677889999975 4889999999877665
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=192.86 Aligned_cols=179 Identities=11% Similarity=0.144 Sum_probs=145.1
Q ss_pred ccceeeccccccccccccccCC--------CCc-----CceeEEEEEEcCC-CCeEEEEeCCCcEEEeecCCCceeeEec
Q 000080 2193 GIGASALGWETQDDFEDYVDPP--------ATV-----ENISTRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYG 2258 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~--------atv-----~ni~VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk~l~Tl~ 2258 (2389)
.++|++ +.|...++|+..... ..+ +.-.|.+++|+|+ +.+|++|+.|++|++||+.+++++.++.
T Consensus 127 ~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 205 (416)
T 2pm9_A 127 NVLASG-GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS 205 (416)
T ss_dssp TBEEEE-CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC
T ss_pred CEEEEE-cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe
Confidence 355666 666777777664322 111 2236799999999 7899999999999999999999888875
Q ss_pred ccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCC---cEEEeeCCCCCccCcccceeee-ecCCCeeEEEEecCCCCE
Q 000080 2259 VLPAANVPPPYALASISALQFDHYG-HRFASAALDG---TVCTWQLEVGGRSNVRPMESCL-CFSSHAMDVSYITSSGSV 2333 (2389)
Q Consensus 2259 vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~Dg---TVkLWDl~tggrs~~k~l~tl~-gHs~~V~sVAFSP~DGsl 2333 (2389)
. |. +..+|...|++++|+|+| +.|++++.|+ +|++||++++. .+...+. +|...|.+++|+|.+|++
T Consensus 206 ~---~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 206 Y---TS-PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----TPLQTLNQGHQKGILSLDWCHQDEHL 277 (416)
T ss_dssp C---CC-CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----SCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred c---cc-cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----CCcEEeecCccCceeEEEeCCCCCCe
Confidence 2 21 123557889999999998 7999999999 99999999863 4667777 899999999999978899
Q ss_pred EEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc-hhhhccc
Q 000080 2334 IAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL-NFALSKC 2385 (2389)
Q Consensus 2334 LASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~-~~~~s~~ 2385 (2389)
||++ +.|++|+|||+ .+++.+..+.+|.+.|++++++|+| +++++-+
T Consensus 278 l~s~---~~dg~v~~wd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 278 LLSS---GRDNTVLLWNP--ESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp EEEE---ESSSEEEEECS--SSCCEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred EEEE---eCCCCEEEeeC--CCCccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 9997 48999999998 5678899999999999999999999 6666543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=196.41 Aligned_cols=143 Identities=11% Similarity=0.046 Sum_probs=114.3
Q ss_pred eEEEEEEcC--CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHP--LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsP--dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
.|.+++|+| ++++|+|||.|++|++||+.+++++..+. . .|...|++++|+|||++||+|+.||+|++|
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~------~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS---A------KSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC---C------CSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---c------CCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 479999999 99999999999999999999999876653 1 244579999999999999999999999999
Q ss_pred eCCCCCccCcccceeeee-cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE---eecCcEE--EE
Q 000080 2299 QLEVGGRSNVRPMESCLC-FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---CHEGLYD--LF 2372 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~g-Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~---GH~~~V~--sv 2372 (2389)
|++++. ....++.+ |...|.+++|+| +|.+||+++ +| +|+|||+. +.+++++++ +|...+. ++
T Consensus 198 d~~~~~----~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~---~~-~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 198 NLSSPD----QASSRFPVDEEAKIKEVKFAD-NGYWMVVEC---DQ-TVVCFDLR--KDVGTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp ESSCTT----SCCEECCCCTTSCEEEEEECT-TSSEEEEEE---SS-BEEEEETT--SSTTCBSSCCCBC-----CCEEE
T ss_pred ECCCCC----CCccEEeccCCCCEEEEEEeC-CCCEEEEEe---CC-eEEEEEcC--CCCcceeecccccccccccceEE
Confidence 999863 22256777 999999999999 999999963 44 99999984 445544433 3555555 69
Q ss_pred eecccchhhhc
Q 000080 2373 LPLKLLNFALS 2383 (2389)
Q Consensus 2373 A~~~~~~~~~s 2383 (2389)
+++|+|++.++
T Consensus 267 ~~~~~g~~l~~ 277 (343)
T 3lrv_A 267 DIDDSGKNMIA 277 (343)
T ss_dssp EECTTSSEEEE
T ss_pred EECCCCCEEEE
Confidence 99999999876
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-17 Score=185.34 Aligned_cols=174 Identities=11% Similarity=0.138 Sum_probs=137.4
Q ss_pred ccceeeccccccccccccccCCC--Cc-CceeEEEEEEcCCCC---eEEEEeCCCcEEEeecCCCceeeEecccCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPA--TV-ENISTRAFSSHPLRP---FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVP 2266 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~a--tv-~ni~VrsVAFsPdG~---~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p 2266 (2389)
.+.+++ +.+...++|+...... .. ..-.+.+++|+|.++ ++++|+.|++|++||+.+++.+.++.
T Consensus 113 ~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------- 183 (408)
T 4a11_B 113 GMFTSS-SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-------- 183 (408)
T ss_dssp TCEEEE-ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC--------
T ss_pred cEEEEE-eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec--------
Confidence 356666 6777777776632111 11 112468889999554 99999999999999999999888874
Q ss_pred CCCCCCCEEEEEECCCCC-EEEEEeCCCcEEEeeCCCCCccCcccceee---------------eecCCCeeEEEEecCC
Q 000080 2267 PPYALASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESC---------------LCFSSHAMDVSYITSS 2330 (2389)
Q Consensus 2267 ~~GH~~~V~sVaFSPDG~-~LASgS~DgTVkLWDl~tggrs~~k~l~tl---------------~gHs~~V~sVAFSP~D 2330 (2389)
+|...|++++|+|+|+ .||+|+.||+|++||++++. .++..+ .+|...|.+++|+| +
T Consensus 184 --~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 256 (408)
T 4a11_B 184 --GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS----GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-D 256 (408)
T ss_dssp --CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS----CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-T
T ss_pred --CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC----cccccccccccccceeeccccccccCceeEEEEcC-C
Confidence 3668899999999998 59999999999999998753 233333 67999999999999 9
Q ss_pred CCEEEEeecCCCCCeEEEeeCCC---------------------------------------------CCCCceEEEEee
Q 000080 2331 GSVIAAAGHSSNGINVVVWDTLA---------------------------------------------PPTSSRASITCH 2365 (2389)
Q Consensus 2331 GslLASAG~sS~D~TVrLWD~l~---------------------------------------------~tg~~v~sL~GH 2365 (2389)
|++||+++ .|++|++||+.. .+++.+..+.+|
T Consensus 257 ~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 333 (408)
T 4a11_B 257 GLHLLTVG---TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333 (408)
T ss_dssp SSEEEEEE---TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred CCEEEEec---CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence 99999974 899999999732 233557888999
Q ss_pred cCcEEEEeecccchhhhccc
Q 000080 2366 EGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2366 ~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.+.|++++++|+|++.++-+
T Consensus 334 ~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 334 YKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp SSCEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEC
Confidence 99999999999999887654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=189.11 Aligned_cols=148 Identities=18% Similarity=0.110 Sum_probs=125.1
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecC--CCceeeEecccCCCCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVC 2296 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~--tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVk 2296 (2389)
.|++++|+|+|++||+|+.|++|++||+. +++.+.++. +|...|++|+|+|+ |+.||+|+.||+|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec----------CCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 46999999999999999999999999997 445566663 46789999999988 99999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCC--CCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D--GslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
+||++++. ......+.+|...|.+++|+| + |++|+++ +.|++|++||+..........+.+|...|.++++
T Consensus 83 iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 83 IWKEENGR---WSQIAVHAVHSASVNSVQWAP-HEYGPLLLVA---SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 155 (379)
T ss_dssp EEEEETTE---EEEEEEECCCSSCEEEEEECC-GGGCSEEEEE---ETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE
T ss_pred EEEcCCCc---eeEeeeecCCCcceEEEEeCC-CCCCCEEEEe---cCCCcEEEEecCCCCceeeEEecCCCCceEEEEE
Confidence 99999862 136777888999999999999 7 8999997 4899999999853322346788999999999999
Q ss_pred cc-------------cchhhhccc
Q 000080 2375 LK-------------LLNFALSKC 2385 (2389)
Q Consensus 2375 ~~-------------~~~~~~s~~ 2385 (2389)
+| +++++++-+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~ 179 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGG 179 (379)
T ss_dssp CCCC----------CTTCEEEEEE
T ss_pred cCccccccccccCCCCCCEEEEEe
Confidence 99 577776543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=191.81 Aligned_cols=173 Identities=13% Similarity=0.034 Sum_probs=139.1
Q ss_pred ccceeeccccccccccccccCCCC--c----CceeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPAT--V----ENISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~at--v----~ni~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
.++|+| +.|...++|+....... . +.-.|.+++|+| ++++|++|+.|++|++||+. ++.+.++. .+
T Consensus 87 ~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~---~~-- 159 (383)
T 3ei3_B 87 TTVAVG-SKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS-GSVIQVFA---KT-- 159 (383)
T ss_dssp TEEEEE-EBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT-SCEEEEEE---CC--
T ss_pred CEEEEE-cCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC-CCceEEEe---cc--
Confidence 467777 77778888877422111 1 234679999999 78999999999999999997 46666664 22
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCC-EEEEeecCCCCC
Q 000080 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGI 2344 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGs-lLASAG~sS~D~ 2344 (2389)
.+|...|++++|+|+|+.||+|+.||+|++||++ + +++.++.+|...|.+++|+| +|+ +||++ +.|+
T Consensus 160 --~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-----~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~---~~d~ 227 (383)
T 3ei3_B 160 --DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G-----HEIFKEKLHKAKVTHAEFNP-RCDWLMATS---SVDA 227 (383)
T ss_dssp --CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S-----CEEEEEECSSSCEEEEEECS-SCTTEEEEE---ETTS
T ss_pred --CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C-----CEEEEeccCCCcEEEEEECC-CCCCEEEEE---eCCC
Confidence 2466889999999999999999999999999995 3 46788899999999999999 888 89987 4899
Q ss_pred eEEEeeCCCCC--CCceEEEEeecCcEEEEeecc-cchhhhccc
Q 000080 2345 NVVVWDTLAPP--TSSRASITCHEGLYDLFLPLK-LLNFALSKC 2385 (2389)
Q Consensus 2345 TVrLWD~l~~t--g~~v~sL~GH~~~V~svA~~~-~~~~~~s~~ 2385 (2389)
+|+|||+.... +.++..+ +|.+.|++++++| +|+++++-+
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence 99999984211 4456666 7999999999999 999888754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-17 Score=179.76 Aligned_cols=173 Identities=10% Similarity=0.058 Sum_probs=133.2
Q ss_pred ccccccceeeccccccccccccccCCC-----CcCceeEEEEEEcCCC--CeEEEEeCCCcEEEeecCCCceeeEecccC
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPPA-----TVENISTRAFSSHPLR--PFFLVGSSNTHIYLWEFGKDKATATYGVLP 2261 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~a-----tv~ni~VrsVAFsPdG--~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~ 2261 (2389)
.......+++ +.|...++|+...... .-+.-.|..++|++++ .++++|+.|++|++||+.+++++.++.
T Consensus 137 ~~~~~~l~s~-s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--- 212 (340)
T 4aow_A 137 SSDNRQIVSG-SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--- 212 (340)
T ss_dssp CTTSSCEEEE-ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC---
T ss_pred eecCccceee-cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec---
Confidence 3445567777 7777777776531111 0112346888999875 478999999999999999999988873
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC
Q 000080 2262 AANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS 2341 (2389)
Q Consensus 2262 gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS 2341 (2389)
+|.+.|++|+|+|||++||+|+.||+|++||++++ +++..+.+| ..|..++|+| ++.+++++
T Consensus 213 -------~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-----~~~~~~~~~-~~v~~~~~~~-~~~~~~~~---- 274 (340)
T 4aow_A 213 -------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-----KHLYTLDGG-DIINALCFSP-NRYWLCAA---- 274 (340)
T ss_dssp -------CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----EEEEEEECS-SCEEEEEECS-SSSEEEEE----
T ss_pred -------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-----ceeeeecCC-ceEEeeecCC-CCceeecc----
Confidence 46789999999999999999999999999999975 456666544 6799999999 87777653
Q ss_pred CCCeEEEeeCCCCCCCceEE---------EEeecCcEEEEeecccchhhhccc
Q 000080 2342 NGINVVVWDTLAPPTSSRAS---------ITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~~v~s---------L~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.|++|+|||+ .++..+.. ..+|...|++++++|+|++.++-+
T Consensus 275 ~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 275 TGPSIKIWDL--EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp ETTEEEEEET--TTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEEC--CCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence 6899999997 33333433 457999999999999999988744
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=197.00 Aligned_cols=173 Identities=12% Similarity=0.000 Sum_probs=135.6
Q ss_pred ccccccceeeccccccccccccccCC--CCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecC---------CCceeeEe
Q 000080 2189 PGYAGIGASALGWETQDDFEDYVDPP--ATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFG---------KDKATATY 2257 (2389)
Q Consensus 2189 ~g~~~~~Asg~~~d~~~~~~~~~d~~--atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~---------tGk~l~Tl 2257 (2389)
.....+.|+| +.|.+.++|+..+.. .++..-.|++++|||+ ++|||.|++|++|+.. +++.++.+
T Consensus 45 ~~d~~~l~sg-~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 45 YYDKWVCMCR-CEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp SEEEEEEEEE-EETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred cCCCCEEEEE-CCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 3455678888 899999999875321 1121224567789998 9999999999999765 44444444
Q ss_pred cccCCCCCCCCCCCCCEEEEEECC--CCCEEEEEeCCCcEEEeeCCCCCccCcccceee-eecCCCeeEEEEecCCCCEE
Q 000080 2258 GVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQLEVGGRSNVRPMESC-LCFSSHAMDVSYITSSGSVI 2334 (2389)
Q Consensus 2258 ~vl~gh~~p~~GH~~~V~sVaFSP--DG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl-~gHs~~V~sVAFSP~DGslL 2334 (2389)
. .+|.+.|.+++|+| +|++||+|+.||+|++||++++. ++... ..|...|.+++|+| ||.+|
T Consensus 121 ~---------~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----~~~~~~~~~~~~i~~~~~~p-dg~~l 185 (343)
T 3lrv_A 121 E---------VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----QYIVHSAKSDVEYSSGVLHK-DSLLL 185 (343)
T ss_dssp E---------CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----EEEEECCCSSCCCCEEEECT-TSCEE
T ss_pred e---------cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----EEEEEecCCCCceEEEEECC-CCCEE
Confidence 2 24668899999999 99999999999999999999862 34333 33556899999999 99999
Q ss_pred EEeecCCCCCeEEEeeCCCCCCCce-EEEEe-ecCcEEEEeecccchhhhccc
Q 000080 2335 AAAGHSSNGINVVVWDTLAPPTSSR-ASITC-HEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2335 ASAG~sS~D~TVrLWD~l~~tg~~v-~sL~G-H~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|+| +.|++|+|||+ .+++.+ ..+.+ |.+.|++++++|+|++.++-+
T Consensus 186 asg---~~dg~i~iwd~--~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 186 ALY---SPDGILDVYNL--SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp EEE---CTTSCEEEEES--SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred EEE---cCCCEEEEEEC--CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence 996 58999999998 466666 88998 999999999999999887754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=187.06 Aligned_cols=178 Identities=13% Similarity=0.124 Sum_probs=133.8
Q ss_pred cceeeccccccccccccccC--CCCc--CceeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2194 IGASALGWETQDDFEDYVDP--PATV--ENISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
++|+| +.|...++|+.... ..++ +.-.|.+++|+| ++++|++|+.|++|++||+.+++.+..+..+ .
T Consensus 87 ~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~ 158 (366)
T 3k26_A 87 LLAVA-GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-------E 158 (366)
T ss_dssp EEEEE-ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST-------T
T ss_pred EEEEe-cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc-------c
Confidence 45555 55556666654311 1111 123579999999 9999999999999999999999988887422 2
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCcc-----------------------CcccceeeeecCCCeeEEE
Q 000080 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS-----------------------NVRPMESCLCFSSHAMDVS 2325 (2389)
Q Consensus 2269 GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs-----------------------~~k~l~tl~gHs~~V~sVA 2325 (2389)
+|...|++++|+|+|+.|++|+.||+|++||++++... ....+....+|...|.+++
T Consensus 159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 46789999999999999999999999999999875200 0001223334999999999
Q ss_pred EecCCCCEEEEeecCCCCCeEEEeeCCCCCC------------CceEEEEeecCcEEEEeeccc--chhhhccc
Q 000080 2326 YITSSGSVIAAAGHSSNGINVVVWDTLAPPT------------SSRASITCHEGLYDLFLPLKL--LNFALSKC 2385 (2389)
Q Consensus 2326 FSP~DGslLASAG~sS~D~TVrLWD~l~~tg------------~~v~sL~GH~~~V~svA~~~~--~~~~~s~~ 2385 (2389)
|+ |++|+++ +.|++|++||+..... ..+..+.+|...|++++++|+ |++.++-+
T Consensus 239 ~~---~~~l~~~---~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 239 WL---GDLILSK---SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp EE---TTEEEEE---CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred Ec---CCEEEEE---ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence 99 4789986 5899999999732111 237889999999999999999 99887654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=187.84 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=127.4
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
-.|.+++|+|++++|++|+.|++|++||+.+++.+.++. +|...|.+++|+|+| .|++++.||+|++||
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY----------GHSQSIVSASWVGDD-KVISCSMDGSVRLWS 316 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC----------CCSSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec----------CCCccEEEEEECCCC-EEEEEeCCCcEEEEE
Confidence 357999999999999999999999999999998888773 356889999999999 999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCC--------------------ce
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--------------------SR 2359 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~--------------------~v 2359 (2389)
++++ +++..+.+|...|.+++|+| +|++||++ +.|++|+|||+ .+++ .+
T Consensus 317 ~~~~-----~~~~~~~~~~~~i~~~~~s~-~~~~l~~~---~~dg~i~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (425)
T 1r5m_A 317 LKQN-----TLLALSIVDGVPIFAGRISQ-DGQKYAVA---FMDGQVNVYDL--KKLNSKSRSLYGNRDGILNPLPIPLY 385 (425)
T ss_dssp TTTT-----EEEEEEECTTCCEEEEEECT-TSSEEEEE---ETTSCEEEEEC--HHHHC--------------CEECCEE
T ss_pred CCCC-----cEeEecccCCccEEEEEEcC-CCCEEEEE---ECCCeEEEEEC--CCCccceeeeecccccccCcccchhh
Confidence 9986 46778889999999999999 99999997 48999999998 3444 68
Q ss_pred EEEEeecC--cEEEEeecccchhhhcc
Q 000080 2360 ASITCHEG--LYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2360 ~sL~GH~~--~V~svA~~~~~~~~~s~ 2384 (2389)
..+.+|.. .|++++++|+|++.++-
T Consensus 386 ~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 386 ASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred hhhcCcccCCceEEEEccCCCceEEEE
Confidence 99999987 99999999999987654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=185.75 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=134.4
Q ss_pred cccceeeccccccccccccccCC---CCcC------ceeEEEEE----EcCCCCeEEEEeCCCcEEEeecCCCceeeEec
Q 000080 2192 AGIGASALGWETQDDFEDYVDPP---ATVE------NISTRAFS----SHPLRPFFLVGSSNTHIYLWEFGKDKATATYG 2258 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~---atv~------ni~VrsVA----FsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~ 2258 (2389)
....|++ +.|...++|+..... .++. ...|++++ |+|++++|++|+.|++|++||+.+++.+...
T Consensus 129 ~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~- 206 (357)
T 3i2n_A 129 APEIVTG-SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET- 206 (357)
T ss_dssp CCEEEEE-ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred ccEEEEE-eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-
Confidence 3456666 677777777765322 1111 12578888 7899999999999999999999998875543
Q ss_pred ccCCCCCCCCCCCCCEEEEEECC---CCCEEEEEeCCCcEEEeeCCCCCccCccccee-----eeecCCCeeEEEEecCC
Q 000080 2259 VLPAANVPPPYALASISALQFDH---YGHRFASAALDGTVCTWQLEVGGRSNVRPMES-----CLCFSSHAMDVSYITSS 2330 (2389)
Q Consensus 2259 vl~gh~~p~~GH~~~V~sVaFSP---DG~~LASgS~DgTVkLWDl~tggrs~~k~l~t-----l~gHs~~V~sVAFSP~D 2330 (2389)
+|...|++++|+| +|+.|++|+.||+|++||++++ ++... +.+|...|.+++|+| +
T Consensus 207 ----------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~-~ 270 (357)
T 3i2n_A 207 ----------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-----HPTKGFASVSEKAHKSTVWQVRHLP-Q 270 (357)
T ss_dssp ----------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-----ETTTEEEEEEEECCSSCEEEEEEET-T
T ss_pred ----------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-----CcccceeeeccCCCcCCEEEEEECC-C
Confidence 2457899999999 9999999999999999999875 23333 348999999999999 8
Q ss_pred CC-EEEEeecCCCCCeEEEeeCCCCCC-----------------CceEEEEeecCcEEEEeecccchhhh
Q 000080 2331 GS-VIAAAGHSSNGINVVVWDTLAPPT-----------------SSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2331 Gs-lLASAG~sS~D~TVrLWD~l~~tg-----------------~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
|+ +||++ +.|++|+|||+..... +++..+.+|.+.|++++++|+|++.+
T Consensus 271 ~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 271 NRELFLTA---GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp EEEEEEEE---ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred CCcEEEEE---eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence 88 88886 4899999999842111 35788999999999999999999887
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-17 Score=189.72 Aligned_cols=175 Identities=11% Similarity=0.045 Sum_probs=137.8
Q ss_pred cceeeccccccccccccccC--CCCc----CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2194 IGASALGWETQDDFEDYVDP--PATV----ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~--~atv----~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
++|++ +.|...++|+.... ..++ +.-.|.+++|+|+|++|++|+.|++|++||+++++.+.++. .+
T Consensus 146 ~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~----- 217 (402)
T 2aq5_A 146 VLLSA-GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD--RP----- 217 (402)
T ss_dssp EEEEE-ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CS-----
T ss_pred EEEEE-cCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--cC-----
Confidence 56666 66777777765421 1122 23457999999999999999999999999999999888873 12
Q ss_pred CCCCC-CEEEEEECCCCCEEEEE---eCCCcEEEeeCCCCCccCcccceee-eecCCCeeEEEEecCCCCEEEEeecCCC
Q 000080 2268 PYALA-SISALQFDHYGHRFASA---ALDGTVCTWQLEVGGRSNVRPMESC-LCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2389)
Q Consensus 2268 ~GH~~-~V~sVaFSPDG~~LASg---S~DgTVkLWDl~tggrs~~k~l~tl-~gHs~~V~sVAFSP~DGslLASAG~sS~ 2342 (2389)
|.+ .+.+++|+|||+.|++| +.|++|++||++++. .++... ..|...+.+++|+| +|++|+++| +.
T Consensus 218 --~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~g--~~ 288 (402)
T 2aq5_A 218 --HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE----EPLSLQELDTSSGVLLPFFDP-DTNIVYLCG--KG 288 (402)
T ss_dssp --SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS----SCSEEEECCCCSSCEEEEEET-TTTEEEEEE--TT
T ss_pred --CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc----CCceEEeccCCCceeEEEEcC-CCCEEEEEE--cC
Confidence 334 48999999999999999 899999999999863 233332 25778899999999 899998665 57
Q ss_pred CCeEEEeeCCCCCCCc-eEEEEeec--CcEEEEeecccchhhhccccc
Q 000080 2343 GINVVVWDTLAPPTSS-RASITCHE--GLYDLFLPLKLLNFALSKCRC 2387 (2389)
Q Consensus 2343 D~TVrLWD~l~~tg~~-v~sL~GH~--~~V~svA~~~~~~~~~s~~~~ 2387 (2389)
|++|++||+. +++. ++.+..|. +.|.+++++|+|.++++.|..
T Consensus 289 dg~i~i~d~~--~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~ 334 (402)
T 2aq5_A 289 DSSIRYFEIT--SEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEI 334 (402)
T ss_dssp CSCEEEEEEC--SSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEE
T ss_pred CCeEEEEEec--CCCcceEeecccccCCcccceEEecccccceeccee
Confidence 9999999983 4443 77777765 999999999999999988763
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-17 Score=184.00 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=119.3
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.+++|+|+|++||+|+.|++|++||+.+++.+.++. +|...|++++|+|||++||+++.||+|++||+
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD----------GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC----------CCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh----------hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 45999999999999999999999999999999988874 46789999999999999999999999999999
Q ss_pred CCCCccC----------------------------------------------------cccceeeeecCC--CeeEEEE
Q 000080 2301 EVGGRSN----------------------------------------------------VRPMESCLCFSS--HAMDVSY 2326 (2389)
Q Consensus 2301 ~tggrs~----------------------------------------------------~k~l~tl~gHs~--~V~sVAF 2326 (2389)
+++.... ..+...+.+|.. .+.+++|
T Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 8762100 001112222333 6677777
Q ss_pred ecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2327 ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2327 SP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+| +|++||++ +.|++|++||+. ...+.+..+.+|.+.|.+++++|+|+++++-+
T Consensus 184 ~~-~~~~l~~~---~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 184 ST-KGKYIIAG---HKDGKISKYDVS-NNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp CG-GGCEEEEE---ETTSEEEEEETT-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cC-CCCEEEEE---cCCCEEEEEECC-CCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 77 77777775 478999999973 12566889999999999999999999887654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=188.63 Aligned_cols=178 Identities=8% Similarity=0.003 Sum_probs=139.1
Q ss_pred ccceeeccccccccccccccC----CCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP----PATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVP 2266 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~----~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p 2266 (2389)
.+.|.+ +.+...++|+.... ..++ +.-.|.+++|+|+|++|++|+.|++|++||+.+++....+..
T Consensus 21 ~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------- 92 (372)
T 1k8k_C 21 TQIAIC-PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI------- 92 (372)
T ss_dssp SEEEEE-CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC-------
T ss_pred CEEEEE-eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe-------
Confidence 345555 55666666655322 1222 123579999999999999999999999999998886665531
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccc-eeeeecCCCeeEEEEecCCCCEEEEeecCCCCCe
Q 000080 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM-ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2267 ~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l-~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~T 2345 (2389)
.+|...|++++|+|+|++||+|+.||+|++||++++. ..... ....+|...|.+++|+| +|++||++ +.|++
T Consensus 93 -~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~---~~dg~ 165 (372)
T 1k8k_C 93 -LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN--DWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAG---SCDFK 165 (372)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT--TEEEEEEECTTCCSCEEEEEECT-TSSEEEEE---ETTSC
T ss_pred -ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC--cceeeeeeecccCCCeeEEEEcC-CCCEEEEE---cCCCC
Confidence 2466889999999999999999999999999999762 11112 22367899999999999 99999997 48999
Q ss_pred EEEeeCC----------------CCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2346 VVVWDTL----------------APPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2346 VrLWD~l----------------~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|++||+. .+.++++..+.+|.+.|.+++++|+|+++++-+
T Consensus 166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 9999963 245677899999999999999999999887654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=205.64 Aligned_cols=174 Identities=9% Similarity=0.034 Sum_probs=132.8
Q ss_pred cccccceeeccccccccccccc------cCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce-------eeE
Q 000080 2190 GYAGIGASALGWETQDDFEDYV------DPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-------TAT 2256 (2389)
Q Consensus 2190 g~~~~~Asg~~~d~~~~~~~~~------d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~-------l~T 2256 (2389)
..+.++|++ +.+.+.++|+.. ++...+..-.|++++|||||++||+|++||+|+|||+.+++. +.+
T Consensus 95 PdG~~LAs~-s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~t 173 (588)
T 2j04_A 95 PIDDWMAVL-SNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESS 173 (588)
T ss_dssp SSSSCEEEE-ETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEE
T ss_pred CCCCEEEEE-eCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeee
Confidence 355667777 778888888621 122222222479999999999999999999999999988753 566
Q ss_pred ecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceee-eecCCCeeEEEEecCCCCEEE
Q 000080 2257 YGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC-LCFSSHAMDVSYITSSGSVIA 2335 (2389)
Q Consensus 2257 l~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl-~gHs~~V~sVAFSP~DGslLA 2335 (2389)
+. .| ..||.++|.+|+||||| +|+++.|++|++||+..+. ......++ .+|...|.+|+|+ |+.||
T Consensus 174 i~---~~---~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~--~~~~~~tL~~~h~~~V~svaFs---g~~LA 240 (588)
T 2j04_A 174 IR---LS---DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS--HQPVSRMIQNASRRKITDLKIV---DYKVV 240 (588)
T ss_dssp EE---CS---CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS--SCCCEEEEECCCSSCCCCEEEE---TTEEE
T ss_pred ee---cc---cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc--cccceeeecccccCcEEEEEEE---CCEEE
Confidence 53 33 25788999999999999 9999999999999998752 11123456 4788999999999 48999
Q ss_pred EeecCCCCCeEEEeeCCCCCCCceEEEE-eecCcEEEEee--cccchhhhcc
Q 000080 2336 AAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGLYDLFLP--LKLLNFALSK 2384 (2389)
Q Consensus 2336 SAG~sS~D~TVrLWD~l~~tg~~v~sL~-GH~~~V~svA~--~~~~~~~~s~ 2384 (2389)
+++ |++|+|||+ .++....+. ||.+.|+.+++ +|+|..+++-
T Consensus 241 Sa~----~~tIkLWd~---~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a 285 (588)
T 2j04_A 241 LTC----PGYVHKIDL---KNYSISSLKTGSLENFHIIPLNHEKESTILLMS 285 (588)
T ss_dssp EEC----SSEEEEEET---TTTEEEEEECSCCSCCCEEEETTCSSCEEEEEC
T ss_pred EEe----CCeEEEEEC---CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEE
Confidence 862 689999997 234443444 99999999999 9999776654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=189.99 Aligned_cols=140 Identities=18% Similarity=0.154 Sum_probs=124.6
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC---CCCEEEEEECCCCCEEEEEeCC---C
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA---LASISALQFDHYGHRFASAALD---G 2293 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH---~~~V~sVaFSPDG~~LASgS~D---g 2293 (2389)
..|.+++|+|++ +|++|+.|++|++||+.+++.+.++... .+| ...|++++|+|+|+.||+|+.| |
T Consensus 187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g 258 (397)
T 1sq9_A 187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ-------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 258 (397)
T ss_dssp CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC-------C---CCCCCEEEEEECSSTTEEEEEEEETTEE
T ss_pred CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc-------ccccccCCccceEEECCCCCEEEEEecCCCCc
Confidence 456899999999 9999999999999999999988887521 125 6889999999999999999999 9
Q ss_pred cEEEeeCCCCCccCcccceeeee-------------cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE
Q 000080 2294 TVCTWQLEVGGRSNVRPMESCLC-------------FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA 2360 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~tl~g-------------Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~ 2360 (2389)
+|++||++++ +++..+.+ |...|.+++|+| +|++||++ +.|++|+|||+ .+++++.
T Consensus 259 ~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~---~~dg~i~iwd~--~~~~~~~ 327 (397)
T 1sq9_A 259 CITLYETEFG-----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSA---GWDGKLRFWDV--KTKERIT 327 (397)
T ss_dssp EEEEEETTTC-----CEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEE---ETTSEEEEEET--TTTEEEE
T ss_pred eEEEEECCCC-----cccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEE---eCCCeEEEEEc--CCCceeE
Confidence 9999999986 46777888 999999999999 99999997 48999999998 5678899
Q ss_pred EEE------ee---------------cCcEEEEeecccc
Q 000080 2361 SIT------CH---------------EGLYDLFLPLKLL 2378 (2389)
Q Consensus 2361 sL~------GH---------------~~~V~svA~~~~~ 2378 (2389)
.+. +| ...|++++++|+|
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 999 88 9999999999999
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=185.60 Aligned_cols=175 Identities=13% Similarity=0.037 Sum_probs=137.0
Q ss_pred cceeeccccccccccccccCC----C--CcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce---eeEecccCCCC
Q 000080 2194 IGASALGWETQDDFEDYVDPP----A--TVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA---TATYGVLPAAN 2264 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~~----a--tv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~---l~Tl~vl~gh~ 2264 (2389)
..|++ +.|...++|+..... . .-..-.|.+++|+|++++|++|+.|++|++||+.+++. ...+.
T Consensus 66 ~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------ 138 (372)
T 1k8k_C 66 RIVTC-GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK------ 138 (372)
T ss_dssp EEEEE-ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC------
T ss_pred EEEEE-cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee------
Confidence 45555 556666666653221 0 11123569999999999999999999999999988763 23331
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCC-------------ccCcccceeeeecCCCeeEEEEecCCC
Q 000080 2265 VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGG-------------RSNVRPMESCLCFSSHAMDVSYITSSG 2331 (2389)
Q Consensus 2265 ~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tgg-------------rs~~k~l~tl~gHs~~V~sVAFSP~DG 2331 (2389)
.+|...|++++|+|+|+.|++|+.||+|++||++... ....+++..+.+|...|.+++|+| +|
T Consensus 139 ---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 214 (372)
T 1k8k_C 139 ---KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NG 214 (372)
T ss_dssp ---TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SS
T ss_pred ---cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CC
Confidence 2467889999999999999999999999999975210 001146677889999999999999 99
Q ss_pred CEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2332 SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2332 slLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
++||++ +.|++|++||+ .+++++..+.+|...|.+++++|+|+++.+-
T Consensus 215 ~~l~~~---~~d~~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 215 SRVAWV---SHDSTVCLADA--DKKMAVATLASETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp SEEEEE---ETTTEEEEEEG--GGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred CEEEEE---eCCCEEEEEEC--CCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence 999997 48999999998 4678899999999999999999999876543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=191.08 Aligned_cols=145 Identities=11% Similarity=0.112 Sum_probs=124.3
Q ss_pred eEEEEEEcCCC-CeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG-~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~DgTVkLW 2298 (2389)
.|.+++|+|+| ++||+|+.|++|++||+.+++....+.. .+|...|++++|+| +|+.|++|+.|++|++|
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG--------MGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC--------CSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec--------CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 56999999999 8999999999999999998887776631 25779999999999 78999999999999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
|++.. ..+.+....+|...|.+++|+| +|++||++ +.|++|++||+ .++.+..+.+|.+.|.+++++|++
T Consensus 147 d~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~---~~d~~i~i~d~---~~~~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 147 DFSGS---VIQVFAKTDSWDYWYCCVDVSV-SRQMLATG---DSTGRLLLLGL---DGHEIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp ETTSC---EEEEEECCCCSSCCEEEEEEET-TTTEEEEE---ETTSEEEEEET---TSCEEEEEECSSSCEEEEEECSSC
T ss_pred ECCCC---ceEEEeccCCCCCCeEEEEECC-CCCEEEEE---CCCCCEEEEEC---CCCEEEEeccCCCcEEEEEECCCC
Confidence 99853 2233344445668899999999 99999997 48999999997 477899999999999999999999
Q ss_pred h-hhhc
Q 000080 2379 N-FALS 2383 (2389)
Q Consensus 2379 ~-~~~s 2383 (2389)
+ .+++
T Consensus 217 ~~~l~s 222 (383)
T 3ei3_B 217 DWLMAT 222 (383)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 8 4554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=178.08 Aligned_cols=143 Identities=10% Similarity=0.017 Sum_probs=125.5
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCC-CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
.+.+++|+|+|++|++|+.|++|++||+.+ ++.+.++. +|...|.+++|+|||+.|++++.||+|++||
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID----------LHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE----------CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe----------cCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 679999999999999999999999999998 67777764 3568899999999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC--------------eEEEeeCCCCCCCceEEEEee
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--------------NVVVWDTLAPPTSSRASITCH 2365 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~--------------TVrLWD~l~~tg~~v~sL~GH 2365 (2389)
++++ +.+..+. |...+..++|+| +|+++++++ .++ .|++||+ .+++.+..+.+|
T Consensus 247 ~~~~-----~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~---~~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~~~~~~ 314 (369)
T 3zwl_B 247 VSTL-----QVLKKYE-TDCPLNTAVITP-LKEFIILGG---GQEAKDVTTTSANEGKFEARFYHK--IFEEEIGRVQGH 314 (369)
T ss_dssp TTTC-----CEEEEEE-CSSCEEEEEECS-SSSEEEEEE---CCC-------------CEEEEEET--TTCCEEEEEECC
T ss_pred CCCC-----ceeeeec-CCCCceeEEecC-CCceEEEee---cCCCceEEEEecCCCcceeEEEec--CCCcchhheecc
Confidence 9986 3445554 788999999999 999999874 455 8999998 577889999999
Q ss_pred cCcEEEEeecccchhhhccc
Q 000080 2366 EGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2366 ~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.+.|++++++|+|++.++-+
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEE
T ss_pred cCcEEEEEECCCCCEEEEEc
Confidence 99999999999999887754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-17 Score=178.79 Aligned_cols=168 Identities=13% Similarity=0.112 Sum_probs=134.6
Q ss_pred ccceeeccccccccccccccCC--CCc-------CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc--eeeEecccC
Q 000080 2193 GIGASALGWETQDDFEDYVDPP--ATV-------ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLP 2261 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~--atv-------~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk--~l~Tl~vl~ 2261 (2389)
...|++ + +...++|+..... ..+ +.-.|.+++|+|++++|++|+.|++|++||+.+++ ....+.
T Consensus 64 ~~l~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--- 138 (337)
T 1gxr_A 64 RHVYTG-G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT--- 138 (337)
T ss_dssp SEEEEE-C-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE---
T ss_pred cEEEEc-C-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc---
Confidence 345555 4 6666677654211 111 22357999999999999999999999999999887 344442
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC
Q 000080 2262 AANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS 2341 (2389)
Q Consensus 2262 gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS 2341 (2389)
+|...|++++|+|+|+.|++++.||+|++||++++ ++...+.+|...|.+++|+| +|++|+++ +
T Consensus 139 -------~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~---~ 202 (337)
T 1gxr_A 139 -------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-----TLVRQFQGHTDGASCIDISN-DGTKLWTG---G 202 (337)
T ss_dssp -------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEECT-TSSEEEEE---E
T ss_pred -------cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----ceeeeeecccCceEEEEECC-CCCEEEEE---e
Confidence 35688999999999999999999999999999976 46778889999999999999 99999997 4
Q ss_pred CCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2342 NGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.|++|++||+ .+++.+..+. |.+.+.+++++|+|++.+.-
T Consensus 203 ~dg~i~~~d~--~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 203 LDNTVRSWDL--REGRQLQQHD-FTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp TTSEEEEEET--TTTEEEEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred cCCcEEEEEC--CCCceEeeec-CCCceEEEEECCCCCEEEEE
Confidence 8999999998 3556666664 89999999999999987654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-17 Score=184.42 Aligned_cols=154 Identities=12% Similarity=0.048 Sum_probs=130.2
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCC------------------------------------
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA------------------------------------ 2263 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh------------------------------------ 2263 (2389)
-.|.+++|+|++++|++|+.|++|++||+.+++.+..+......
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 229 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI 229 (425)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCE
T ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeE
Confidence 35799999999999999999999999999999887766421100
Q ss_pred --------C--CCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCE
Q 000080 2264 --------N--VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSV 2333 (2389)
Q Consensus 2264 --------~--~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGsl 2333 (2389)
. ....+|...|++++|+|+|+.|++++.||+|++||++++ ++...+.+|...|.+++|+| +| +
T Consensus 230 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~-~~-~ 302 (425)
T 1r5m_A 230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----NSQNCFYGHSQSIVSASWVG-DD-K 302 (425)
T ss_dssp EEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----SCSEEECCCSSCEEEEEEET-TT-E
T ss_pred EEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----ccceEecCCCccEEEEEECC-CC-E
Confidence 0 001257789999999999999999999999999999975 46777888999999999999 87 8
Q ss_pred EEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2334 IAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2334 LASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|+++ +.|++|++||+ .+++.+..+.+|...|.+++++|+|++.++-+
T Consensus 303 l~~~---~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 303 VISC---SMDGSVRLWSL--KQNTLLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp EEEE---ETTSEEEEEET--TTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred EEEE---eCCCcEEEEEC--CCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 8886 48999999998 46778899999999999999999999877644
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=194.92 Aligned_cols=183 Identities=11% Similarity=0.088 Sum_probs=134.5
Q ss_pred ccccceeeccccccccccccccCCC-------------Cc--Cc------------eeEEEEEEcCCC--CeEEEEeCCC
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPPA-------------TV--EN------------ISTRAFSSHPLR--PFFLVGSSNT 2241 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~a-------------tv--~n------------i~VrsVAFsPdG--~~LASGS~Dg 2241 (2389)
.+..+|+| +.|...++|+...... ++ +. -.|.+|+|+|++ .+|++|+.|+
T Consensus 39 ~g~~la~g-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~ 117 (447)
T 3dw8_B 39 SGELLATG-DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 117 (447)
T ss_dssp SSSEEEEE-ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS
T ss_pred CCCEEEEE-cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCC
Confidence 34566777 7777777777642210 11 11 236899999999 7999999999
Q ss_pred cEEEeecCCCceeeEecccCCCC------------------------------CCCCCCCCCEEEEEECCCCCEEEEEeC
Q 000080 2242 HIYLWEFGKDKATATYGVLPAAN------------------------------VPPPYALASISALQFDHYGHRFASAAL 2291 (2389)
Q Consensus 2242 TIRLWDl~tGk~l~Tl~vl~gh~------------------------------~p~~GH~~~V~sVaFSPDG~~LASgS~ 2291 (2389)
+|++||+.+++.......+.++. .-..+|...|++++|+|||+.||+| .
T Consensus 118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 196 (447)
T 3dw8_B 118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D 196 (447)
T ss_dssp CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C
T ss_pred eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C
Confidence 99999998765432100000000 0013688999999999999999999 7
Q ss_pred CCcEEEeeCCCCCccCcccce-------eeeecCCCeeEEEEecCCC-CEEEEeecCCCCCeEEEeeCCCCCCCc----e
Q 000080 2292 DGTVCTWQLEVGGRSNVRPME-------SCLCFSSHAMDVSYITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSS----R 2359 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~-------tl~gHs~~V~sVAFSP~DG-slLASAG~sS~D~TVrLWD~l~~tg~~----v 2359 (2389)
|++|++||+++++ +.+. ++.+|...|.+++|+| +| ++||++ +.|++|+|||+. +++. +
T Consensus 197 d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~---~~dg~i~iwd~~--~~~~~~~~~ 266 (447)
T 3dw8_B 197 DLRINLWHLEITD----RSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYS---SSKGTIRLCDMR--ASALCDRHS 266 (447)
T ss_dssp SSEEEEEETTEEE----EEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEE---ETTSCEEEEETT--TCSSSCTTC
T ss_pred CCeEEEEECCCCC----ceeeeeecccccccccCcceEEEEECC-CCCcEEEEE---eCCCeEEEEECc--CCcccccee
Confidence 9999999999542 2332 4678999999999999 77 999997 489999999983 4554 7
Q ss_pred EEEEeecC------------cEEEEeecccchhhhccc
Q 000080 2360 ASITCHEG------------LYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2360 ~sL~GH~~------------~V~svA~~~~~~~~~s~~ 2385 (2389)
+.+.+|.+ .|.+++++|+|+++++-.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred eEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 89999987 999999999999987643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=209.28 Aligned_cols=144 Identities=11% Similarity=0.164 Sum_probs=129.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|++++|||+|++||+|+.||+|++||+.+|+.+.++. +|...|++++|+|||++||+|+.||+|++||+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ----------VTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----------CCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe----------cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 46999999999999999999999999999999988874 46688999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCC-CceEEEEeecCcEEEEeecc-cc
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEGLYDLFLPLK-LL 2378 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg-~~v~sL~GH~~~V~svA~~~-~~ 2378 (2389)
+++ +.+.++.+|.+.|++++|+| +|++||++ +.|++|++||+. ++ ...+.+.+|...|.+++++| +|
T Consensus 85 ~~~-----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~---~~dg~i~vw~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~ 153 (814)
T 3mkq_A 85 NTG-----EKVVDFEAHPDYIRSIAVHP-TKPYVLSG---SDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDP 153 (814)
T ss_dssp TTC-----CEEEEEECCSSCEEEEEECS-SSSEEEEE---ETTSEEEEEEGG--GTSEEEEEEECCSSCEEEEEEETTEE
T ss_pred CCC-----cEEEEEecCCCCEEEEEEeC-CCCEEEEE---cCCCEEEEEECC--CCceEEEEEcCCCCcEEEEEEEcCCC
Confidence 987 46778889999999999999 99999987 489999999983 34 55789999999999999999 88
Q ss_pred hhhhccc
Q 000080 2379 NFALSKC 2385 (2389)
Q Consensus 2379 ~~~~s~~ 2385 (2389)
+.+++-+
T Consensus 154 ~~l~~~~ 160 (814)
T 3mkq_A 154 STFASGC 160 (814)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 8777654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-18 Score=189.89 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=119.5
Q ss_pred eEEEEEEcCC----CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCCcE
Q 000080 2221 STRAFSSHPL----RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTV 2295 (2389)
Q Consensus 2221 ~VrsVAFsPd----G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~DgTV 2295 (2389)
.|.+++|+|+ |++|++|+.|++|++||+.+++.+.++. +|...|++++|+| +|+.||+|+.||+|
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV----------GHGNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE----------SCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec----------CCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 4799999999 6799999999999999999999988874 4668999999999 99999999999999
Q ss_pred EEeeCCCCCccCcccceee---eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEE-----------
Q 000080 2296 CTWQLEVGGRSNVRPMESC---LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS----------- 2361 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl---~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~s----------- 2361 (2389)
++||++++ +....+ .+|...|.+++|+| +|++|++++ .|++|++||+. +++.++.
T Consensus 141 ~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~---~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~ 209 (366)
T 3k26_A 141 RLWNIQTD-----TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCG---MDHSLKLWRIN--SKRMMNAIKESYDYNPNK 209 (366)
T ss_dssp EEEETTTT-----EEEEEECSTTSCSSCEEEEEECT-TSSEEEEEE---TTSCEEEEESC--SHHHHHHHHHHHTCCGGG
T ss_pred EEEEeecC-----eEEEEecccccccCceeEEEECC-CCCEEEEec---CCCCEEEEECC--CCccccccceeEEecCCC
Confidence 99999986 344555 68999999999999 999999974 89999999983 3333333
Q ss_pred -----------------EEeecCcEEEEeecccchhhhcc
Q 000080 2362 -----------------ITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2362 -----------------L~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+.+|.+.|.+++++ |+++++-
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp CSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 33499999999998 6666654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=183.55 Aligned_cols=150 Identities=11% Similarity=0.064 Sum_probs=126.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.+++|+|+|++|++|+ |++|++||+.+++....+..+.. .+|...|++++|+|||+.|++|+.||+|++||+
T Consensus 53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC-----LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC-----SCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccc-----cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 458899999999999999 99999999988764433321111 246789999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+++. ......+.+|...|.+++|+| +|++|+++ +.|++|++||+ .+++.+..+.+|.+.|.+++++|+|++
T Consensus 127 ~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~---~~dg~v~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 127 AAPT---PRIKAELTSSAPACYALAISP-DSKVCFSC---CSDGNIAVWDL--HNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp CCC-----EEEEEEECSSSCEEEEEECT-TSSEEEEE---ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCC---cceeeecccCCCceEEEEECC-CCCEEEEE---eCCCcEEEEeC--CCCceeeeeecccCceEEEEECCCCCE
Confidence 9862 135677888999999999999 99999987 48999999998 466778999999999999999999998
Q ss_pred hhccc
Q 000080 2381 ALSKC 2385 (2389)
Q Consensus 2381 ~~s~~ 2385 (2389)
+++-+
T Consensus 198 l~~~~ 202 (337)
T 1gxr_A 198 LWTGG 202 (337)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87644
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=207.70 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=138.8
Q ss_pred cccceeeccccccccccccccCC--CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPP--ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~--atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
..++|+| ++|.+.++|+..... .++ +.-.|.+++|+|++++|+|||.|++|++||... .+..++. .. .
T Consensus 442 g~~l~sg-s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~--~~----~ 513 (694)
T 3dm0_A 442 GQFALSG-SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTIS--EG----G 513 (694)
T ss_dssp SSEEEEE-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEEC--SS----T
T ss_pred CCEEEEE-eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC-Ccceeec--cC----C
Confidence 3567888 889999999874221 111 223579999999999999999999999999854 4443332 11 1
Q ss_pred CCCCCCEEEEEECCCC--CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCe
Q 000080 2268 PYALASISALQFDHYG--HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG--~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~T 2345 (2389)
.+|...|++++|+|++ ..|++|+.|++|++||++++ +...++.+|.+.|++++|+| +|++|||+ +.|++
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-----~~~~~~~~h~~~v~~v~~sp-dg~~l~sg---~~Dg~ 584 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-----KLRSTLAGHTGYVSTVAVSP-DGSLCASG---GKDGV 584 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECT-TSSEEEEE---ETTSB
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-----cEEEEEcCCCCCEEEEEEeC-CCCEEEEE---eCCCe
Confidence 3688999999999998 68999999999999999975 46678899999999999999 99999997 48999
Q ss_pred EEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2346 VVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2346 VrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
|+|||+ .+++++..+.. ...|.+++++|++.++.+
T Consensus 585 i~iwd~--~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 585 VLLWDL--AEGKKLYSLEA-NSVIHALCFSPNRYWLCA 619 (694)
T ss_dssp CEEEET--TTTEEEECCBC-SSCEEEEEECSSSSEEEE
T ss_pred EEEEEC--CCCceEEEecC-CCcEEEEEEcCCCcEEEE
Confidence 999998 46677777764 567999999999987654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=190.71 Aligned_cols=170 Identities=16% Similarity=0.168 Sum_probs=135.1
Q ss_pred cceeeccccccccccccccC---------CCC--cCceeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCC---ceeeEec
Q 000080 2194 IGASALGWETQDDFEDYVDP---------PAT--VENISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKD---KATATYG 2258 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~---------~at--v~ni~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tG---k~l~Tl~ 2258 (2389)
.+++| +.+....+|+.... ... .+...|.+++|+| ++.+|++|+.|++|++||++++ +.+.++.
T Consensus 196 ~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 196 YLLSA-SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp EEEEE-CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred eEEEE-eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 56666 66667777766431 111 1223579999999 6789999999999999999987 4555553
Q ss_pred ccCCCCCCCCCCCCCEEEEEECCCCC-EEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCC-CEEEE
Q 000080 2259 VLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSG-SVIAA 2336 (2389)
Q Consensus 2259 vl~gh~~p~~GH~~~V~sVaFSPDG~-~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DG-slLAS 2336 (2389)
+|...|++|+|+|+|+ .||+|+.||+|++||+++.+ .++.++.+|...|.+++|+| +| .+||+
T Consensus 275 ----------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~~~~~h~~~v~~i~~sp-~~~~~l~s 339 (430)
T 2xyi_A 275 ----------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLHSFESHKDEIFQVQWSP-HNETILAS 339 (430)
T ss_dssp ----------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSEEEECCSSCEEEEEECS-SCTTEEEE
T ss_pred ----------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeEEeecCCCCEEEEEECC-CCCCEEEE
Confidence 3568899999999997 79999999999999999753 57888899999999999999 66 57888
Q ss_pred eecCCCCCeEEEeeCCCCC------------CCceEEEEeecCcEEEEeecccchhhh
Q 000080 2337 AGHSSNGINVVVWDTLAPP------------TSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2337 AG~sS~D~TVrLWD~l~~t------------g~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
+| .|++|+|||+.... .+.+..+.+|.+.|++++++|+++|.|
T Consensus 340 ~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 340 SG---TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394 (430)
T ss_dssp EE---TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEE
T ss_pred Ee---CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEE
Confidence 64 89999999984211 255778899999999999999999644
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=195.31 Aligned_cols=150 Identities=9% Similarity=0.100 Sum_probs=117.4
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc-----------eeeEecccCCCCCCCCCCC------------CCEEE
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-----------ATATYGVLPAANVPPPYAL------------ASISA 2276 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk-----------~l~Tl~vl~gh~~p~~GH~------------~~V~s 2276 (2389)
-.|.+|+|+|+|++||+|+.||+|+|||+.+++ ...++. ||. ..|++
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ----------SHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE----------CCCCEEEGGGTEEECCCCCE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc----------cccccccccccccccCceEE
Confidence 356999999999999999999999999998877 355553 455 77999
Q ss_pred EEECCCC--CEEEEEeCCCcEEEeeCCCCCcc--------------------C--------------ccccee-eeecCC
Q 000080 2277 LQFDHYG--HRFASAALDGTVCTWQLEVGGRS--------------------N--------------VRPMES-CLCFSS 2319 (2389)
Q Consensus 2277 VaFSPDG--~~LASgS~DgTVkLWDl~tggrs--------------------~--------------~k~l~t-l~gHs~ 2319 (2389)
|+|+|+| ..|++|+.||+|++||+.++... . ..+... ..+|..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 9999999 89999999999999999763100 0 000112 368999
Q ss_pred CeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE-------EEEeecCcEEEEeecccc-hhhhccc
Q 000080 2320 HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-------SITCHEGLYDLFLPLKLL-NFALSKC 2385 (2389)
Q Consensus 2320 ~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~-------sL~GH~~~V~svA~~~~~-~~~~s~~ 2385 (2389)
.|.+++|+| +|++||++ .|++|+|||+. ..+++++ .+.+|.+.|++++++|+| +.+++-+
T Consensus 179 ~v~~~~~~~-~~~~l~s~----~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 246 (447)
T 3dw8_B 179 HINSISINS-DYETYLSA----DDLRINLWHLE-ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS 246 (447)
T ss_dssp CCCEEEECT-TSSEEEEE----CSSEEEEEETT-EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE
T ss_pred ceEEEEEcC-CCCEEEEe----CCCeEEEEECC-CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe
Confidence 999999999 99999984 59999999983 1233344 256899999999999999 7776643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=217.07 Aligned_cols=144 Identities=10% Similarity=0.068 Sum_probs=130.5
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
|.+++|+|||++||+|+.||+|++||+.+++++.++. +|.+.|++++|+|||++||+|+.||+|++||++
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~----------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK----------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec----------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 5899999999999999999999999999999988874 467899999999999999999999999999999
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecC-CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~-DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
++ +++.++.+|...|.+++|+|+ ++.++|++ +.|++|++||+ .+++++.++.+|.+.|++++++|+|++
T Consensus 688 ~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg---~~d~~v~vwd~--~~~~~~~~~~~h~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 688 TG-----KLVHTYDEHSEQVNCCHFTNKSNHLLLATG---SNDFFLKLWDL--NQKECRNTMFGHTNSVNHCRFSPDDEL 757 (1249)
T ss_dssp TC-----CEEEEEECCSSCEEEEEECSSSSCCEEEEE---ETTSCEEEEET--TSSSEEEEECCCSSCEEEEEECSSTTE
T ss_pred CC-----ceEEEEcCCCCcEEEEEEecCCCceEEEEE---eCCCeEEEEEC--CCcchhheecCCCCCEEEEEEecCCCE
Confidence 87 467888999999999999994 34578886 58999999998 577889999999999999999999998
Q ss_pred hhccc
Q 000080 2381 ALSKC 2385 (2389)
Q Consensus 2381 ~~s~~ 2385 (2389)
.++-+
T Consensus 758 l~s~s 762 (1249)
T 3sfz_A 758 LASCS 762 (1249)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=187.74 Aligned_cols=172 Identities=10% Similarity=0.101 Sum_probs=134.7
Q ss_pred ccceeeccccccccccccccCCCC---c--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPAT---V--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~at---v--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
.+.++| +.+....+|+....... . +.-.|.+++|+|+|++|++|+.|++|++||+.+++.+.++.
T Consensus 187 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--------- 256 (401)
T 4aez_A 187 HVLSSG-SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT--------- 256 (401)
T ss_dssp TEEEEE-ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC---------
T ss_pred CEEEEE-cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec---------
Confidence 345556 66666667765321111 1 12367999999999999999999999999999999888773
Q ss_pred CCCCCCEEEEEECCCC-CEEEEEe--CCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC
Q 000080 2268 PYALASISALQFDHYG-HRFASAA--LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI 2344 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG-~~LASgS--~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~ 2344 (2389)
+|...|.+++|+|+| +.+++|+ .|++|++||++++ +++.++. |...|.+++|+| +|+.|++++ ++.|+
T Consensus 257 -~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-----~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~-g~~dg 327 (401)
T 4aez_A 257 -NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-----ARVNTVD-AGSQVTSLIWSP-HSKEIMSTH-GFPDN 327 (401)
T ss_dssp -CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-----CEEEEEE-CSSCEEEEEECS-SSSEEEEEE-CTTTC
T ss_pred -CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-----CEEEEEe-CCCcEEEEEECC-CCCeEEEEe-ecCCC
Confidence 356889999999987 5677765 7999999999986 3455554 677899999999 899999863 35899
Q ss_pred eEEEeeCCCCCCCc--eEEEEeecCcEEEEeecccchhhhccc
Q 000080 2345 NVVVWDTLAPPTSS--RASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2345 TVrLWD~l~~tg~~--v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+|+|||+. +++. +..+.+|.+.|.+++++|+|++.++-+
T Consensus 328 ~i~v~~~~--~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 328 NLSIWSYS--SSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp EEEEEEEE--TTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC
T ss_pred cEEEEecC--CccceeEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 99999983 4334 455889999999999999999887653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=178.23 Aligned_cols=134 Identities=15% Similarity=0.197 Sum_probs=112.6
Q ss_pred eEEEEEEcCC---CCeEEEEeCCCcEEEeecCC-Ccee-eEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcE
Q 000080 2221 STRAFSSHPL---RPFFLVGSSNTHIYLWEFGK-DKAT-ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2389)
Q Consensus 2221 ~VrsVAFsPd---G~~LASGS~DgTIRLWDl~t-Gk~l-~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTV 2295 (2389)
.|.+|+|+|+ |++||+|+.|++|++||+.+ ++.+ .++. +|...|++++|+|||++||+|+.||+|
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ----------MHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE----------ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec----------cccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 4699999999 69999999999999999987 5554 4453 467899999999999999999999999
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEE--ecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEe
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFL 2373 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAF--SP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA 2373 (2389)
++||++++ + .....+|...|.+++| +| +|++|+++ +.|++|++||+ .+++.++.+..|. .+.++.
T Consensus 111 ~iwd~~~~-----~-~~~~~~~~~~v~~~~~~~~~-~~~~l~~~---~~dg~i~vwd~--~~~~~~~~~~~~~-~~~~~~ 177 (368)
T 3mmy_A 111 KMWDLSSN-----Q-AIQIAQHDAPVKTIHWIKAP-NYSCVMTG---SWDKTLKFWDT--RSSNPMMVLQLPE-RCYCAD 177 (368)
T ss_dssp EEEETTTT-----E-EEEEEECSSCEEEEEEEECS-SCEEEEEE---ETTSEEEEECS--SCSSCSEEEECSS-CEEEEE
T ss_pred EEEEcCCC-----C-ceeeccccCceEEEEEEeCC-CCCEEEEc---cCCCcEEEEEC--CCCcEEEEEecCC-CceEEE
Confidence 99999976 2 2346789999999999 77 88999997 48999999998 4677888888775 566666
Q ss_pred eccc
Q 000080 2374 PLKL 2377 (2389)
Q Consensus 2374 ~~~~ 2377 (2389)
+...
T Consensus 178 ~~~~ 181 (368)
T 3mmy_A 178 VIYP 181 (368)
T ss_dssp EETT
T ss_pred ecCC
Confidence 6554
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=187.88 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=136.1
Q ss_pred cccccccccccccCCC--C--c-CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCE
Q 000080 2200 GWETQDDFEDYVDPPA--T--V-ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASI 2274 (2389)
Q Consensus 2200 ~~d~~~~~~~~~d~~a--t--v-~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V 2274 (2389)
+.+...++|+...... . . +.-.|.+++|+|+|++|++|+.||+|++||+.+++.+.++. +|...|
T Consensus 110 ~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~v 179 (401)
T 4aez_A 110 ALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA----------GHQARV 179 (401)
T ss_dssp EETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----------CCSSCE
T ss_pred ECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec----------CCCCce
Confidence 4566667776532111 1 1 23467999999999999999999999999999999988874 467899
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCC
Q 000080 2275 SALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP 2354 (2389)
Q Consensus 2275 ~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~ 2354 (2389)
.+++| +|+.|++|+.||+|++||+++.+ .....+.+|...|.+++|+| +|++||++ +.|++|++||+ .
T Consensus 180 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~---~~d~~v~iwd~--~ 247 (401)
T 4aez_A 180 GCLSW--NRHVLSSGSRSGAIHHHDVRIAN----HQIGTLQGHSSEVCGLAWRS-DGLQLASG---GNDNVVQIWDA--R 247 (401)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTSSS----CEEEEEECCSSCEEEEEECT-TSSEEEEE---ETTSCEEEEET--T
T ss_pred EEEEE--CCCEEEEEcCCCCEEEEecccCc----ceeeEEcCCCCCeeEEEEcC-CCCEEEEE---eCCCeEEEccC--C
Confidence 99999 67899999999999999999653 46788899999999999999 99999997 48999999998 4
Q ss_pred CCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2355 PTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2355 tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
+++.+..+.+|...|.+++++|+|+..+.
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~p~~~~ll~ 276 (401)
T 4aez_A 248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276 (401)
T ss_dssp CSSEEEEECCCSSCCCEEEECTTSTTEEE
T ss_pred CCCccEEecCCcceEEEEEECCCCCCEEE
Confidence 56778999999999999999999877664
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=196.24 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=113.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeE--ecccCCCCCCCCCCCCCEEEEEECC--------CCCEEEEEeCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATAT--YGVLPAANVPPPYALASISALQFDH--------YGHRFASAALD 2292 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~T--l~vl~gh~~p~~GH~~~V~sVaFSP--------DG~~LASgS~D 2292 (2389)
....++|++.+||+||.|++|||||..++++... +.. ..||.+.|++|+|+| ||++|||||.|
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~-------~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGG-------KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECT-------TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecc-------cCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 4457788899999999999999999988876432 222 347889999999998 99999999999
Q ss_pred CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE------------
Q 000080 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA------------ 2360 (2389)
Q Consensus 2293 gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~------------ 2360 (2389)
+||||||++++ .+...+.+|...|.+|+|+|+++.+||++ +.|++|||||+. +++...
T Consensus 166 ~tv~~Wd~~~~-----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~---~~d~~v~~wd~~--t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 166 CTLIIWRLTDE-----GPILAGYPLSSPGISVQFRPSNPNQLIVG---ERNGNIRIFDWT--LNLSAEENSQTELVKNPW 235 (393)
T ss_dssp SEEEEEEEETT-----EEEEEEEECSSCEEEEEEETTEEEEEEEE---ETTSEEEEEETT--CCC----------CSCCC
T ss_pred CeEEEEECCCC-----ceeeeecCCCCCcEEEEECCCCCceEEec---CCCCEEEEEECC--CCcccccccccCCcccce
Confidence 99999999875 35677788999999999999444588886 589999999983 332221
Q ss_pred -------------EEEeecCcEEEEeec-ccchhhhccc
Q 000080 2361 -------------SITCHEGLYDLFLPL-KLLNFALSKC 2385 (2389)
Q Consensus 2361 -------------sL~GH~~~V~svA~~-~~~~~~~s~~ 2385 (2389)
...+|...|.+++++ ++|+.+++-+
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s 274 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC 274 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred EEecccccceeeeecccccccceeeeeecCCCCEEEEEe
Confidence 235788889999886 7888887754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.8e-17 Score=213.47 Aligned_cols=170 Identities=7% Similarity=0.000 Sum_probs=137.8
Q ss_pred ccceeeccccccccccccccCCC--Cc-CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPA--TV-ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPY 2269 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~a--tv-~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~G 2269 (2389)
.++|+| +.|.+.++|+...... .. +...|++|+|+| |++|||||.|++|++||+.+++++.++.
T Consensus 30 ~~lAsg-s~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~----------- 96 (902)
T 2oaj_A 30 NLLAIA-TVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF----------- 96 (902)
T ss_dssp TEEEEE-ETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-----------
T ss_pred CEEEEE-eCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-----------
Confidence 577888 8888888887532111 11 124679999999 8899999999999999999999988874
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccc---------eeeeecCCCeeEEEEecCCCCEEEEeecC
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM---------ESCLCFSSHAMDVSYITSSGSVIAAAGHS 2340 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l---------~tl~gHs~~V~sVAFSP~DGslLASAG~s 2340 (2389)
|...|++|+|+|+|++||+|+.||+|++||++++. . .++ ..+.+|.+.|.+++|+|+++.+||+|
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~--~-~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g--- 170 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ--L-SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS--- 170 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE--E-EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE---
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc--c-ccceeccccccccccccCCCCeEEEEEccCCCCEEEEE---
Confidence 23679999999999999999999999999999752 1 111 34578999999999999556788875
Q ss_pred CCCCeEEEeeCCCCCCCceEEEEee------------------cCcEEEEeecccchhhhcc
Q 000080 2341 SNGINVVVWDTLAPPTSSRASITCH------------------EGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2341 S~D~TVrLWD~l~~tg~~v~sL~GH------------------~~~V~svA~~~~~~~~~s~ 2384 (2389)
+.|++| |||+ .++++++.+.+| .+.|++++++|+|+++++-
T Consensus 171 ~~dg~v-lWd~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 171 YEYVTL-TYSL--VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp CSSCEE-EEET--TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred eCCCcE-EEEC--CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence 589999 9998 466778888776 5789999999999988764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=183.82 Aligned_cols=169 Identities=11% Similarity=0.144 Sum_probs=131.8
Q ss_pred ccccccccccccc-----CCCCcC-ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCC----CceeeEecccCCCCCCCCC
Q 000080 2200 GWETQDDFEDYVD-----PPATVE-NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGK----DKATATYGVLPAANVPPPY 2269 (2389)
Q Consensus 2200 ~~d~~~~~~~~~d-----~~atv~-ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~t----Gk~l~Tl~vl~gh~~p~~G 2269 (2389)
+.|...++|+... +..+.. .-.|.+++|+|+|++||+|+.|++|++||+.+ .+.+.++. +
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~----------~ 111 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS----------N 111 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC----------C
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc----------C
Confidence 5566667776542 222222 24679999999999999999999999999987 34666552 4
Q ss_pred CCCCEEEEEECCC-CCEEEEEeCCCcEEEeeCCCCCcc----CcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC
Q 000080 2270 ALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRS----NVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI 2344 (2389)
Q Consensus 2270 H~~~V~sVaFSPD-G~~LASgS~DgTVkLWDl~tggrs----~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~ 2344 (2389)
|...|++++|+|+ +++||+|+.||+|++||++++... ....+....+|...|.+++|+|+++.+||++ +.|+
T Consensus 112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg 188 (416)
T 2pm9_A 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA---GSSN 188 (416)
T ss_dssp SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE---SSSS
T ss_pred CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE---cCCC
Confidence 6789999999999 899999999999999999986200 1112234578999999999999337899986 5899
Q ss_pred eEEEeeCCCCCCCceEEEEee------cCcEEEEeecccch-hhhc
Q 000080 2345 NVVVWDTLAPPTSSRASITCH------EGLYDLFLPLKLLN-FALS 2383 (2389)
Q Consensus 2345 TVrLWD~l~~tg~~v~sL~GH------~~~V~svA~~~~~~-~~~s 2383 (2389)
+|++||+ .+++.+..+..| ...|.+++++|+|. .+++
T Consensus 189 ~v~iwd~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 189 FASIWDL--KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CEEEEET--TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred CEEEEEC--CCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 9999998 466778888877 89999999999984 4443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-17 Score=192.11 Aligned_cols=148 Identities=11% Similarity=0.032 Sum_probs=127.3
Q ss_pred eEEEEEEcCCCCeE-EEEeCCCcEEEeecC--CCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 000080 2221 STRAFSSHPLRPFF-LVGSSNTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~L-ASGS~DgTIRLWDl~--tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL 2297 (2389)
.|++++|+|+|++| |+|+.|++|++||+. +++++.++. .| +|...|++|+|+|||++||+|+.||+|++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~---~~-----~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK---RF-----CFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE---EE-----ECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee---cc-----cCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 46999999999996 999999999999998 888888774 12 24578999999999999999999999999
Q ss_pred eeCCCCCccCcc-cceeeeecCCCeeEEEEecCC---CCEEEEeecCCCCCeEEEeeCCCCCCCceEE-EEeecCcEEEE
Q 000080 2298 WQLEVGGRSNVR-PMESCLCFSSHAMDVSYITSS---GSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGLYDLF 2372 (2389)
Q Consensus 2298 WDl~tggrs~~k-~l~tl~gHs~~V~sVAFSP~D---GslLASAG~sS~D~TVrLWD~l~~tg~~v~s-L~GH~~~V~sv 2372 (2389)
|++.++. ... +...+.+|...|.+++|+| + |++||++ +.|++|+|||+ .+++++.. +.+|.+.|+++
T Consensus 176 ~~~~~~~--~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~---~~d~~i~vwd~--~~~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 176 IDINSIP--EEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITS---DRDEHIKISHY--PQCFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp EETTSCC--CSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEE---ETTSCEEEEEE--SCTTCEEEECCCCSSCEEEE
T ss_pred EecCCcc--cccccceeeecccCceEEEEEcC-CCCCCcEEEEE---cCCCcEEEEEC--CCCceeeeeecCCCCceEEE
Confidence 9998863 112 4557889999999999999 8 8999997 48999999998 56777777 66999999999
Q ss_pred eecccchhhhccc
Q 000080 2373 LPLKLLNFALSKC 2385 (2389)
Q Consensus 2373 A~~~~~~~~~s~~ 2385 (2389)
+++ +|+++++-+
T Consensus 248 ~~s-d~~~l~s~~ 259 (450)
T 2vdu_B 248 CCG-KDYLLLSAG 259 (450)
T ss_dssp EEC-STTEEEEEE
T ss_pred EEC-CCCEEEEEe
Confidence 999 999888754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=174.39 Aligned_cols=142 Identities=12% Similarity=0.092 Sum_probs=119.8
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
...|+|||++ +||+| .|++|||||+.+|+++++++ .| +|...|++|+|+|+|++||||+.||+|++||++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~---~~-----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQ---ME-----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEE---CC-----STTCCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEE---ec-----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecC
Confidence 4568999986 67665 59999999999999998875 22 467889999999999999999999999999999
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhh
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~ 2381 (2389)
++ +++.++.+|...+.++++. +.+||++ +.|+++++|+.. .....+..+.+|...+.++++++.|+..
T Consensus 98 ~~-----~~~~~~~~h~~~~~~~~~~---~~~l~s~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 98 QQ-----KRLRNMTSHSARVGSLSWN---SYILSSG---SRSGHIHHHDVR-VAEHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp TT-----EEEEEEECCSSCEEEEEEE---TTEEEEE---ETTSEEEEEETT-SSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred Cc-----eeEEEecCccceEEEeecC---CCEEEEE---ecCCceEeeecC-CCceeEEEEcCccCceEEEEEcCCCCEE
Confidence 86 5778889999988766655 4889986 589999999973 2334578999999999999999999988
Q ss_pred hccc
Q 000080 2382 LSKC 2385 (2389)
Q Consensus 2382 ~s~~ 2385 (2389)
++-+
T Consensus 166 ~s~~ 169 (318)
T 4ggc_A 166 ASGG 169 (318)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=175.45 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=132.0
Q ss_pred ccceeeccccccccccccccCCCCc--CceeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPATV--ENISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPY 2269 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~atv--~ni~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~G 2269 (2389)
...+++ +.+...++|+........ +.-.|.+++|+| ++++|++|+.|++|++|| .++.+.++. . .
T Consensus 115 ~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~---~------~ 182 (313)
T 3odt_A 115 GVVISG-SWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFS---G------I 182 (313)
T ss_dssp TEEEEE-ETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEEC---S------S
T ss_pred CEEEEE-eCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEe---c------c
Confidence 345555 555556666522111111 123568999999 999999999999999999 456666664 1 2
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEe
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLW 2349 (2389)
|...|.+++|+|+|+ |++|+.||+|++||++++ +++..+.+|...|.+++|+| +|. |+++ +.|++|++|
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~-~~~-l~~~---~~dg~v~iw 251 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-----DVLRTYEGHESFVYCIKLLP-NGD-IVSC---GEDRTVRIW 251 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEECT-TSC-EEEE---ETTSEEEEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-----hhhhhhhcCCceEEEEEEec-CCC-EEEE---ecCCEEEEE
Confidence 568899999999998 999999999999999986 46788899999999999999 875 6676 489999999
Q ss_pred eCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2350 DTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2350 D~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
|+ .+++.++.+.+|.+.|++++++|+|+++.
T Consensus 252 d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 282 (313)
T 3odt_A 252 SK--ENGSLKQVITLPAISIWSVDCMSNGDIIV 282 (313)
T ss_dssp CT--TTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred EC--CCCceeEEEeccCceEEEEEEccCCCEEE
Confidence 98 56788999999999999999999998553
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-17 Score=189.98 Aligned_cols=180 Identities=6% Similarity=-0.043 Sum_probs=139.9
Q ss_pred ccccceeecccccccccccccc---CC--C-Cc---CceeEEEEEEcCCCCeEEEEeCCCcEEEeecC---CCceeeEec
Q 000080 2191 YAGIGASALGWETQDDFEDYVD---PP--A-TV---ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFG---KDKATATYG 2258 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d---~~--a-tv---~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~---tGk~l~Tl~ 2258 (2389)
....+|+| +.|.+.++|+... .. . .. +.-.|.+++|+|++++|++|+.|++|++||+. +|+++.++.
T Consensus 75 ~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 153 (437)
T 3gre_A 75 ETPYLITG-SDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN 153 (437)
T ss_dssp SSCEEEEE-ETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEe-cCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc
Confidence 34578888 8888999998754 11 1 11 13468999999999999999999999999994 666655442
Q ss_pred ccCCCC-----CCCCCCCCCEEEEE--ECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeee--cCCCeeEEEEecC
Q 000080 2259 VLPAAN-----VPPPYALASISALQ--FDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC--FSSHAMDVSYITS 2329 (2389)
Q Consensus 2259 vl~gh~-----~p~~GH~~~V~sVa--FSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g--Hs~~V~sVAFSP~ 2329 (2389)
+|. ..+.++...+.+++ ++|||+.|++|+.||+|++||++++ +++.++.+ |...|.+++|+|
T Consensus 154 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~h~~~v~~~~~s~- 224 (437)
T 3gre_A 154 ---CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-----ERLQIIENSPRHGAVSSICIDE- 224 (437)
T ss_dssp ---EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-----CEEEEEECCGGGCCEEEEEECT-
T ss_pred ---cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----eeeEEEccCCCCCceEEEEECC-
Confidence 110 00111346677777 6689999999999999999999986 46777888 899999999999
Q ss_pred CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE-eecCcEEEE----eecccchhhhccc
Q 000080 2330 SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGLYDLF----LPLKLLNFALSKC 2385 (2389)
Q Consensus 2330 DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~-GH~~~V~sv----A~~~~~~~~~s~~ 2385 (2389)
+|++||++ +.|++|+|||+ .++++++++. +|...|+++ +++++|+++++-+
T Consensus 225 ~~~~l~s~---~~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 225 ECCVLILG---TTRGIIDIWDI--RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp TSCEEEEE---ETTSCEEEEET--TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred CCCEEEEE---cCCCeEEEEEc--CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence 89999997 48999999998 4577788886 788899999 5566787777643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-17 Score=202.76 Aligned_cols=145 Identities=10% Similarity=0.076 Sum_probs=113.7
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|++|+|||||++||++|.||+|++||.. + ++.++ . |.++.+ ...|.+|+|||||++||+|+.||+|+|||+
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~-~-~l~~l---~-~~~~~~--~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDN-K-MLTNL---D-SKGNLS--SRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETT-E-EEEEC---C-CSSCST--TTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCC-c-eeeec---c-CCCccc--cccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 56999999999999999999999999953 3 55554 3 432111 246999999999999999999999999999
Q ss_pred CCCCccCcc----cceee----eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc---eEEEE-eecCc
Q 000080 2301 EVGGRSNVR----PMESC----LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RASIT-CHEGL 2368 (2389)
Q Consensus 2301 ~tggrs~~k----~l~tl----~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~---v~sL~-GH~~~ 2368 (2389)
.++. ... .+.++ .||...|.+|+|+| || ||++ +.|++||+||+. .++. .++|. +|...
T Consensus 159 ~~~~--l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laas---s~D~tVrlWd~~--~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 159 RKNS--ENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAA---LSNNSVFSMTVS--ASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp CCCT--TTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEE---ETTCCEEEECCC--SSSSCCCEEEEECCCSSC
T ss_pred CCCc--cccccceeeeeeecccccccccEEEEEEcC-Cc--EEEE---eCCCeEEEEECC--CCccccceeeecccccCc
Confidence 9752 101 24565 67889999999999 88 5555 379999999983 3332 46784 89999
Q ss_pred EEEEeecccchhhhccc
Q 000080 2369 YDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2369 V~svA~~~~~~~~~s~~ 2385 (2389)
|.+++++ |+.++|-|
T Consensus 229 V~svaFs--g~~LASa~ 243 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC 243 (588)
T ss_dssp CCCEEEE--TTEEEEEC
T ss_pred EEEEEEE--CCEEEEEe
Confidence 9999999 67777655
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=196.52 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=114.9
Q ss_pred cccc-ccccccceeeccccccccccccccC--CCCcC-----ceeEEEEEEcCCCCeE------------EEEeCCCcEE
Q 000080 2185 AFGI-PGYAGIGASALGWETQDDFEDYVDP--PATVE-----NISTRAFSSHPLRPFF------------LVGSSNTHIY 2244 (2389)
Q Consensus 2185 ~~~~-~g~~~~~Asg~~~d~~~~~~~~~d~--~atv~-----ni~VrsVAFsPdG~~L------------ASGS~DgTIR 2244 (2389)
+|.. +|....+|+| ++|.+.++|+.... ..++. ...|.+++|||||+++ +||+.|++||
T Consensus 185 ~fs~~~g~~~~LaSg-S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 185 TFAEVQGMQEALLGT-TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEEEEETSTTEEEEE-ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred EeeccCCCCceEEEe-cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 5555 7888999999 99999999987522 23332 1245778999999986 7799999999
Q ss_pred EeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCee-E
Q 000080 2245 LWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM-D 2323 (2389)
Q Consensus 2245 LWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~-s 2323 (2389)
+||..+|+++.++... . |.||...+.+..++ |..+|+|+.|+||||||++++ +.+.++.+|...+. .
T Consensus 264 lWd~~tgk~l~v~~~~----~-p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-----k~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 264 VINPKTTLSVGVMLYC----L-PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-----QCTALLPPVSDQHWSF 331 (356)
T ss_dssp EEETTTTEEEEEEEEC----C-CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC-----SEEEEECCC--CCCCE
T ss_pred EEECCCCEEEEEEEee----c-cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC-----cEEEEecCCCCCeEEE
Confidence 9999999988775310 1 23666666555555 999999999999999999997 47788999988766 5
Q ss_pred EEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2324 VSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2324 VAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
++|+| ||++|||| |.|+||||||+
T Consensus 332 vafSP-DG~~LaSG---S~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSG-TDSHLLAG---QKDGNIFVYHY 355 (356)
T ss_dssp EEECS-SSSEEEEE---CTTSCEEEEEE
T ss_pred EEECC-CCCEEEEE---ECCCcEEEecC
Confidence 89999 99999996 69999999995
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=187.96 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=137.8
Q ss_pred ccceeeccccccccccccccC--CCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP--PATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
+..|+| +.|...++|+.... ..++ +.-.|.+++|+|++ +|++|+.||+|++||+.+++++.++.
T Consensus 133 ~~l~sg-s~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~---------- 200 (464)
T 3v7d_B 133 NYVITG-ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE---------- 200 (464)
T ss_dssp TEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC----------
T ss_pred CEEEEE-cCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC----------
Confidence 356666 66777777765321 1111 22367999999998 99999999999999999999988874
Q ss_pred CCCCCEEEEEEC--CCCCEEEEEeCCCcEEEeeCCCCCccC------------------cccceeeeecCCCeeEEEEec
Q 000080 2269 YALASISALQFD--HYGHRFASAALDGTVCTWQLEVGGRSN------------------VRPMESCLCFSSHAMDVSYIT 2328 (2389)
Q Consensus 2269 GH~~~V~sVaFS--PDG~~LASgS~DgTVkLWDl~tggrs~------------------~k~l~tl~gHs~~V~sVAFSP 2328 (2389)
+|.+.|++++|+ |+|+.|++|+.||+|++||++++.... ...+..+.+|...|.++ ++
T Consensus 201 ~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~ 278 (464)
T 3v7d_B 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG 278 (464)
T ss_dssp CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE
T ss_pred CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC
Confidence 467899999998 688999999999999999999763100 00155678899988877 55
Q ss_pred CCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2329 SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2329 ~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+|++|+++ +.|++|++||+ .+++++..+.+|.+.|.+++++++|++.++-+
T Consensus 279 -~~~~l~~~---~~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 279 -HGNIVVSG---SYDNTLIVWDV--AQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp -ETTEEEEE---ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred -CCCEEEEE---eCCCeEEEEEC--CCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 67999997 48999999998 46788999999999999999999999887654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=175.23 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=143.5
Q ss_pred cccceeeccccccccccccccCCCC-------cC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDPPAT-------VE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA 2262 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~~at-------v~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~g 2262 (2389)
..++|+| +.|.+.++|++...... +. .-.|.+++|+|+|++|++|+.|++|++|+...+.......
T Consensus 51 ~~~l~S~-s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~---- 125 (340)
T 4aow_A 51 PDMILSA-SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---- 125 (340)
T ss_dssp TTEEEEE-ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----
T ss_pred CCEEEEE-cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec----
Confidence 4688999 99999999987533211 11 2367999999999999999999999999998887766653
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCC-CCEEEEeecCC
Q 000080 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS-GSVIAAAGHSS 2341 (2389)
Q Consensus 2263 h~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D-GslLASAG~sS 2341 (2389)
.+...+..+.++|+++.|++|+.|+.+++||+.... .......+|...+..++|+++. ..+++++ +
T Consensus 126 ------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~---~ 192 (340)
T 4aow_A 126 ------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC----KYTVQDESHSEWVSCVRFSPNSSNPIIVSC---G 192 (340)
T ss_dssp ------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE----EEEECSSSCSSCEEEEEECSCSSSCEEEEE---E
T ss_pred ------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc----eEEEEeccccCcccceEEccCCCCcEEEEE---c
Confidence 244779999999999999999999999999998642 3455677899999999999842 3467775 4
Q ss_pred CCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2342 NGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.|++|++||+ .+++++..+.+|++.|++++++|+|+++++-+
T Consensus 193 ~d~~i~i~d~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 193 WDKLVKVWNL--ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp TTSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEEC--CCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 8999999998 56777899999999999999999999887643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=194.19 Aligned_cols=173 Identities=8% Similarity=0.074 Sum_probs=133.0
Q ss_pred ccccceeeccccccccccccccC--CCCc----CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCC
Q 000080 2191 YAGIGASALGWETQDDFEDYVDP--PATV----ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN 2264 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~--~atv----~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~ 2264 (2389)
...+.++| +.|...++|+.... ..++ +.-.|.+++|+|++++|++|+.||+|++||+++++++.++..
T Consensus 181 ~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----- 254 (437)
T 3gre_A 181 EKSLLVAL-TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF----- 254 (437)
T ss_dssp SCEEEEEE-ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-----
T ss_pred CCCEEEEE-eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-----
Confidence 34566777 77777788876422 1111 234679999999999999999999999999999999988741
Q ss_pred CCCCCCCCCEEEE----EECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeee------------------------e
Q 000080 2265 VPPPYALASISAL----QFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCL------------------------C 2316 (2389)
Q Consensus 2265 ~p~~GH~~~V~sV----aFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~------------------------g 2316 (2389)
+|...|++| +|+|||+.||+|+.||+|++||++++. ....+. +
T Consensus 255 ----~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 255 ----GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH-----CQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp ----TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE-----EEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred ----CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc-----EEEEEEcCCCCCccceecccccccccceecc
Confidence 345789999 555679999999999999999999862 233333 3
Q ss_pred --cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe------------------------------
Q 000080 2317 --FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC------------------------------ 2364 (2389)
Q Consensus 2317 --Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G------------------------------ 2364 (2389)
|...|++++|++ |++|+|+ +.|++|++||+ .++++++.+.+
T Consensus 326 ~~~~~~v~~l~~~~--~~~l~s~---~~d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
T 3gre_A 326 IRSLNALSTISVSN--DKILLTD---EATSSIVMFSL--NELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTH 398 (437)
T ss_dssp CCSGGGGCCEEEET--TEEEEEE---GGGTEEEEEET--TCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----
T ss_pred cccCCceEEEEECC--ceEEEec---CCCCeEEEEEC--CCcccceEEecccccCceEEEEEeecceEEEEEeccccccc
Confidence 667788999994 6899987 48999999998 46677777776
Q ss_pred -------ecCcEEEEeeccc--chhhhccc
Q 000080 2365 -------HEGLYDLFLPLKL--LNFALSKC 2385 (2389)
Q Consensus 2365 -------H~~~V~svA~~~~--~~~~~s~~ 2385 (2389)
|.+.|++++.+++ +..++|-.
T Consensus 399 ~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 399 SVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp --------CCCEEEEEEEESSSSEEEEEEE
T ss_pred ccCcccccccceeeEeeeccCCceEEEEEc
Confidence 8999999999988 65666543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-16 Score=186.00 Aligned_cols=171 Identities=9% Similarity=-0.004 Sum_probs=137.8
Q ss_pred ceeeccccccccccccc--c--CCCCcC----ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceee-EecccCCCCC
Q 000080 2195 GASALGWETQDDFEDYV--D--PPATVE----NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATA-TYGVLPAANV 2265 (2389)
Q Consensus 2195 ~Asg~~~d~~~~~~~~~--d--~~atv~----ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~-Tl~vl~gh~~ 2265 (2389)
.|++ +.|...++|+.. . ....+. ...|.+++|+|+|++|++|+.|++|++||+.+++... ....+
T Consensus 118 ~~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~----- 191 (450)
T 2vdu_B 118 IACA-DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPI----- 191 (450)
T ss_dssp EEEE-GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCS-----
T ss_pred EEEE-CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceee-----
Confidence 4777 778888888874 1 111121 1357999999999999999999999999998887554 11111
Q ss_pred CCCCCCCCEEEEEECCC---CCEEEEEeCCCcEEEeeCCCCCccCccccee-eeecCCCeeEEEEecCCCCEEEEeecCC
Q 000080 2266 PPPYALASISALQFDHY---GHRFASAALDGTVCTWQLEVGGRSNVRPMES-CLCFSSHAMDVSYITSSGSVIAAAGHSS 2341 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPD---G~~LASgS~DgTVkLWDl~tggrs~~k~l~t-l~gHs~~V~sVAFSP~DGslLASAG~sS 2341 (2389)
.+|...|++|+|+|| |++|++|+.|++|++||++++ +.+.. +.+|...|.+++|+ +|++||++ +
T Consensus 192 --~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~h~~~v~~~~~s--d~~~l~s~---~ 259 (450)
T 2vdu_B 192 --LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-----FIVDKWLFGHKHFVSSICCG--KDYLLLSA---G 259 (450)
T ss_dssp --EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-----TCEEEECCCCSSCEEEEEEC--STTEEEEE---E
T ss_pred --ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-----ceeeeeecCCCCceEEEEEC--CCCEEEEE---e
Confidence 246789999999999 999999999999999999986 34555 66899999999999 78999997 4
Q ss_pred CCCeEEEeeCCCCCCCceEEEEee-------------------------cCcEEEEeecccchhhhccc
Q 000080 2342 NGINVVVWDTLAPPTSSRASITCH-------------------------EGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2342 ~D~TVrLWD~l~~tg~~v~sL~GH-------------------------~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.|++|+|||+ .++++++.+..| ...|.+++++|+|+++++-|
T Consensus 260 ~d~~v~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 260 GDDKIFAWDW--KTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp SSSEEEEEET--TTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred CCCeEEEEEC--CCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 8999999998 567888888744 36789999999999988766
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=176.76 Aligned_cols=171 Identities=10% Similarity=0.091 Sum_probs=132.0
Q ss_pred ccceeeccc---cccccccccccCCCC-c----CceeEEEEEEcCC---CCeEEEEeCCCcEEEeecCCCc-eeeEeccc
Q 000080 2193 GIGASALGW---ETQDDFEDYVDPPAT-V----ENISTRAFSSHPL---RPFFLVGSSNTHIYLWEFGKDK-ATATYGVL 2260 (2389)
Q Consensus 2193 ~~~Asg~~~---d~~~~~~~~~d~~at-v----~ni~VrsVAFsPd---G~~LASGS~DgTIRLWDl~tGk-~l~Tl~vl 2260 (2389)
.+.|.| ++ |...++|+....... . +.-.|.+++|+|+ |++|++|+.|++|++||+.+++ .+.++.
T Consensus 32 ~l~~~~-s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 108 (357)
T 3i2n_A 32 KFVTMG-NFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-- 108 (357)
T ss_dssp EEEEEE-C--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC--
T ss_pred eEEEec-CccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE--
Confidence 345556 55 777778876422111 1 1236799999999 7999999999999999999888 777763
Q ss_pred CCCCCCCCCCCCCEEEE------EECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCC----CeeEEE----E
Q 000080 2261 PAANVPPPYALASISAL------QFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS----HAMDVS----Y 2326 (2389)
Q Consensus 2261 ~gh~~p~~GH~~~V~sV------aFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~----~V~sVA----F 2326 (2389)
+|...|+++ +|+|+|+.|++|+.||+|++||++++. .+...+..|.+ .|.+++ |
T Consensus 109 --------~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 109 --------GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD----DPVANMEPVQGENKRDCWTVAFGNAY 176 (357)
T ss_dssp --------CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS----SCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred --------ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC----CcceeccccCCCCCCceEEEEEEecc
Confidence 467889999 568999999999999999999999863 35666666655 889998 6
Q ss_pred ecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc---cchhhhccc
Q 000080 2327 ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK---LLNFALSKC 2385 (2389)
Q Consensus 2327 SP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~---~~~~~~s~~ 2385 (2389)
+| +|++|+++ +.|++|++||+. +++ ......|.+.|.+++++| ++++.++-+
T Consensus 177 ~~-~~~~l~~~---~~d~~i~i~d~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 177 NQ-EERVVCAG---YDNGDIKLFDLR--NMA-LRWETNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp C--CCCEEEEE---ETTSEEEEEETT--TTE-EEEEEECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred CC-CCCEEEEE---ccCCeEEEEECc--cCc-eeeecCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 67 99999997 489999999983 333 455678999999999999 888877643
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=183.17 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=124.5
Q ss_pred eeEEEEEEc----CCCCe-EEEEeCCCcEEEeecCC------Cceee-----EecccCCCCCCCCCCCCCEEEEEECCCC
Q 000080 2220 ISTRAFSSH----PLRPF-FLVGSSNTHIYLWEFGK------DKATA-----TYGVLPAANVPPPYALASISALQFDHYG 2283 (2389)
Q Consensus 2220 i~VrsVAFs----PdG~~-LASGS~DgTIRLWDl~t------Gk~l~-----Tl~vl~gh~~p~~GH~~~V~sVaFSPDG 2283 (2389)
-.|.+++|+ |++++ |++|+.|++|++||+.+ ++.+. ++. ++...+..|...|++++|+|+|
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ---GTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE---EEECCSSSSCCCCCEEEECTTS
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceee---eeeccccCCCCCceEEEECCCc
Confidence 457999999 99999 99999999999999988 76665 552 1000001256889999999999
Q ss_pred CEEEEEeCCCcEEEeeCCCCCccCcccceeeee---c---CCCeeEEEEecCCCCEEEEeecCCCC---CeEEEeeCCCC
Q 000080 2284 HRFASAALDGTVCTWQLEVGGRSNVRPMESCLC---F---SSHAMDVSYITSSGSVIAAAGHSSNG---INVVVWDTLAP 2354 (2389)
Q Consensus 2284 ~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g---H---s~~V~sVAFSP~DGslLASAG~sS~D---~TVrLWD~l~~ 2354 (2389)
.|++|+.||+|++||++++ +++..+.+ | ...|.+++|+| +|++||+++ .| ++|+|||+ .
T Consensus 199 -~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~---~d~~~g~i~i~d~--~ 266 (397)
T 1sq9_A 199 -LIATGFNNGTVQISELSTL-----RPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAH---DSNSFGCITLYET--E 266 (397)
T ss_dssp -EEEEECTTSEEEEEETTTT-----EEEEEEECCC---CCCCCEEEEEECS-STTEEEEEE---EETTEEEEEEEET--T
T ss_pred -eEEEEeCCCcEEEEECCCC-----ceeEEEeccccccccCCccceEEECC-CCCEEEEEe---cCCCCceEEEEEC--C
Confidence 9999999999999999975 46777888 9 99999999999 899999974 77 99999998 4
Q ss_pred CCCceEEEEe-------------ecCcEEEEeecccchhhhccc
Q 000080 2355 PTSSRASITC-------------HEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2355 tg~~v~sL~G-------------H~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+++.+..+.+ |.+.|.+++++|+|++.++-+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 310 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 310 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence 6788999999 999999999999999887754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-16 Score=184.73 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=121.6
Q ss_pred eEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCce-------eeEecccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeC
Q 000080 2221 STRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKA-------TATYGVLPAANVPPPYALASISALQFDH-YGHRFASAAL 2291 (2389)
Q Consensus 2221 ~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~-------l~Tl~vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~ 2291 (2389)
.|.+++|+|+++ +|++|+.||+|++||+.++.. ...+ .+|...|.+|+|+| +++.||+++.
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~h~~~v~~v~~~p~~~~~l~s~~~ 252 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF----------TGHTAVVEDVAWHLLHESLFGSVAD 252 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE----------CCCSSCEEEEEECSSCTTEEEEEET
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee----------cCCCCCEeeeEEeCCCCCEEEEEeC
Confidence 568899999999 999999999999999987432 2222 25678999999999 6799999999
Q ss_pred CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCC-EEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEE
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYD 2370 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGs-lLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~ 2370 (2389)
||+|++||++++. ..+++..+.+|...|++++|+| +|. +||++ +.|++|+|||+. ..++.++.+.+|.+.|+
T Consensus 253 dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~tg---~~dg~v~vwd~~-~~~~~~~~~~~h~~~v~ 325 (430)
T 2xyi_A 253 DQKLMIWDTRNNN--TSKPSHTVDAHTAEVNCLSFNP-YSEFILATG---SADKTVALWDLR-NLKLKLHSFESHKDEIF 325 (430)
T ss_dssp TSEEEEEETTCSC--SSSCSEEEECCSSCEEEEEECS-SCTTEEEEE---ETTSEEEEEETT-CTTSCSEEEECCSSCEE
T ss_pred CCeEEEEECCCCC--CCcceeEeecCCCCeEEEEeCC-CCCCEEEEE---eCCCeEEEEeCC-CCCCCeEEeecCCCCEE
Confidence 9999999999863 2356778889999999999999 666 78886 489999999984 22466899999999999
Q ss_pred EEeecccchhh
Q 000080 2371 LFLPLKLLNFA 2381 (2389)
Q Consensus 2371 svA~~~~~~~~ 2381 (2389)
+++++|+|++.
T Consensus 326 ~i~~sp~~~~~ 336 (430)
T 2xyi_A 326 QVQWSPHNETI 336 (430)
T ss_dssp EEEECSSCTTE
T ss_pred EEEECCCCCCE
Confidence 99999999763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=199.80 Aligned_cols=173 Identities=13% Similarity=0.121 Sum_probs=140.0
Q ss_pred ccceeeccccccccccccccC--CCC--cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP--PAT--VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~--~at--v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
...|.+ +.+...++|+.... ..+ .+..+|++++|+|+|++||+|+.||+|++||+.+|+.+.++.
T Consensus 26 ~~la~~-~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~---------- 94 (814)
T 3mkq_A 26 PWVLTT-LYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE---------- 94 (814)
T ss_dssp SEEEEE-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE----------
T ss_pred CEEEEE-eCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----------
Confidence 345555 45556666665311 111 123467999999999999999999999999999999988874
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEE
Q 000080 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2389)
Q Consensus 2269 GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrL 2348 (2389)
+|.+.|++++|+|||++||+|+.||+|++||++++. .....+.+|...|.+++|+|.+|+.|+++ +.|++|++
T Consensus 95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~---~~dg~v~v 167 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDPSTFASG---CLDRTVKV 167 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----EEEEEEECCSSCEEEEEEETTEEEEEEEE---ETTSEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----eEEEEEcCCCCcEEEEEEEcCCCCEEEEE---eCCCeEEE
Confidence 467889999999999999999999999999998763 45677889999999999999778899987 48999999
Q ss_pred eeCCCCCCCceEEEEeec-CcEEEEeecc--cchhhhccc
Q 000080 2349 WDTLAPPTSSRASITCHE-GLYDLFLPLK--LLNFALSKC 2385 (2389)
Q Consensus 2349 WD~l~~tg~~v~sL~GH~-~~V~svA~~~--~~~~~~s~~ 2385 (2389)
||+ .+++....+..|. ..+.+++++| +|+++++-+
T Consensus 168 wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 168 WSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp EET--TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred EEC--CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 998 4566677776665 8999999998 888877643
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=174.86 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=138.0
Q ss_pred ccccceeeccccccccccccccCCC--Cc---------------CceeEEEEEEcC-CCCeEEEEeCCCcEEEeecCCCc
Q 000080 2191 YAGIGASALGWETQDDFEDYVDPPA--TV---------------ENISTRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDK 2252 (2389)
Q Consensus 2191 ~~~~~Asg~~~d~~~~~~~~~d~~a--tv---------------~ni~VrsVAFsP-dG~~LASGS~DgTIRLWDl~tGk 2252 (2389)
....+|+| +.|...++|+...... .. +.-.|.+++|+| ++++|++|+.|++|++||+.+++
T Consensus 55 ~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 133 (408)
T 4a11_B 55 EGRYMLSG-GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133 (408)
T ss_dssp TCCEEEEE-ETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE
T ss_pred CCCEEEEE-cCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc
Confidence 34556677 6777777877642211 11 334679999999 78899999999999999999999
Q ss_pred eeeEecccCCCCCCCCCCCCCEEEEEECCC---CCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC
Q 000080 2253 ATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS 2329 (2389)
Q Consensus 2253 ~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD---G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~ 2329 (2389)
.+..+. +...+.+++|+|+ ++.+++|+.||+|++||++++ +.+..+.+|...|.+++|+|
T Consensus 134 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~v~~~~~~~- 196 (408)
T 4a11_B 134 TADVFN-----------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-----SCSHILQGHRQEILAVSWSP- 196 (408)
T ss_dssp EEEEEE-----------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-----CCCEEECCCCSCEEEEEECS-
T ss_pred cceecc-----------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-----ceeeeecCCCCcEEEEEECC-
Confidence 888774 2366999999985 559999999999999999986 46778889999999999999
Q ss_pred CCC-EEEEeecCCCCCeEEEeeCCCCCCCceEEE---------------EeecCcEEEEeecccchhhhccc
Q 000080 2330 SGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASI---------------TCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2330 DGs-lLASAG~sS~D~TVrLWD~l~~tg~~v~sL---------------~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+|+ +||++ +.|++|++||+.. ...++..+ .+|.+.|.+++++|+|++.++-+
T Consensus 197 ~~~~ll~~~---~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 197 RYDYILATA---SADSRVKLWDVRR-ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp SCTTEEEEE---ETTSCEEEEETTC-SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEE---cCCCcEEEEECCC-CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 777 68886 4899999999842 22345555 68999999999999999877643
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=190.21 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=121.8
Q ss_pred eEEEEEEcCCCCeEEEEeC-CCcEEEeecCCCcee-eEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEe
Q 000080 2221 STRAFSSHPLRPFFLVGSS-NTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~-DgTIRLWDl~tGk~l-~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLW 2298 (2389)
.+.+++|+ +++|++|+. |++|++||+.+++.. ..+ .+|...|++++|+|||++||+|+.||+|++|
T Consensus 448 ~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 515 (615)
T 1pgu_A 448 PGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLK----------TPLRAKPSYISISPSETYIAAGDVMGKILLY 515 (615)
T ss_dssp CEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECS----------SCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CceEEEEc--CCEEEEeecCCCeEEEEECCCcccccccc----------CCccCceEEEEECCCCCEEEEcCCCCeEEEe
Confidence 46778888 889999999 999999999877654 222 2467899999999999999999999999999
Q ss_pred eCCCCCccCcccceeeee-cCCCeeEEEEecC---------CCCEEEEeecCCCCCeEEEeeCCCCCC-CceEEEEeecC
Q 000080 2299 QLEVGGRSNVRPMESCLC-FSSHAMDVSYITS---------SGSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEG 2367 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~g-Hs~~V~sVAFSP~---------DGslLASAG~sS~D~TVrLWD~l~~tg-~~v~sL~GH~~ 2367 (2389)
|++++ +++..+.+ |...|.+++|+|. +|++||++ +.|++|+|||+ .++ ++++.+.+|..
T Consensus 516 ~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~---~~dg~i~iw~~--~~~~~~~~~~~~h~~ 585 (615)
T 1pgu_A 516 DLQSR-----EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG---SLDTNIFIYSV--KRPMKIIKALNAHKD 585 (615)
T ss_dssp ETTTT-----EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE---ETTSCEEEEES--SCTTCCEEETTSSTT
T ss_pred eCCCC-----cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEE---cCCCcEEEEEC--CCCceechhhhcCcc
Confidence 99986 45677777 9999999999984 78999997 48999999998 344 67899999999
Q ss_pred cEEEEeecccchhhhccc
Q 000080 2368 LYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2368 ~V~svA~~~~~~~~~s~~ 2385 (2389)
.|++++++|+|+ .++-+
T Consensus 586 ~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 586 GVNNLLWETPST-LVSSG 602 (615)
T ss_dssp CEEEEEEEETTE-EEEEE
T ss_pred ceEEEEEcCCCC-eEEec
Confidence 999999999999 66543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=174.42 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=135.2
Q ss_pred cccceeecccccccccccccc-----------CCCCc-CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCC-CceeeEec
Q 000080 2192 AGIGASALGWETQDDFEDYVD-----------PPATV-ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYG 2258 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d-----------~~atv-~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~t-Gk~l~Tl~ 2258 (2389)
..+.+++ ++|...++|+... +..++ ....|.+++|+|++ +++|+.|++|++||+.+ ++......
T Consensus 112 ~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~ 188 (342)
T 1yfq_A 112 DDKLIAA-SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE 188 (342)
T ss_dssp TTEEEEE-ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred CCEEEEE-cCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee
Confidence 3455666 6666777776532 12222 22467999999998 99999999999999988 65432211
Q ss_pred ccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCCcEEEeeCCCCCc-cCcccceeeeecCC---------CeeEEEEe
Q 000080 2259 VLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGR-SNVRPMESCLCFSS---------HAMDVSYI 2327 (2389)
Q Consensus 2259 vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~DgTVkLWDl~tggr-s~~k~l~tl~gHs~---------~V~sVAFS 2327 (2389)
. ..|...|++|+|+| +|+.||+|+.||+|++||++.++. ...++...+.+|.. .|.+++|+
T Consensus 189 ~--------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 260 (342)
T 1yfq_A 189 E--------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260 (342)
T ss_dssp E--------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred e--------cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence 1 13557899999999 999999999999999999987510 00146677788865 99999999
Q ss_pred cCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee-cCcEEEEeecccchhhhccc
Q 000080 2328 TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-EGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2328 P~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH-~~~V~svA~~~~~~~~~s~~ 2385 (2389)
| +|++||++ +.|++|++||+ .+++.+..+.+| .+.|++++ ++|++.++-+
T Consensus 261 ~-~~~~l~~~---~~dg~i~vwd~--~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 261 P-RHKFLYTA---GSDGIISCWNL--QTRKKIKNFAKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp T-TTCCEEEE---ETTSCEEEEET--TTTEEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred C-CCCEEEEe---cCCceEEEEcC--ccHhHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence 9 99999997 48999999998 467788999999 99999999 9999887654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-16 Score=180.66 Aligned_cols=162 Identities=10% Similarity=0.058 Sum_probs=117.1
Q ss_pred cccccccccccC---CCCcCceeEEEEEEcCCCCeEEE--EeCCCcEEEeecCCCc----------------eeeEeccc
Q 000080 2202 ETQDDFEDYVDP---PATVENISTRAFSSHPLRPFFLV--GSSNTHIYLWEFGKDK----------------ATATYGVL 2260 (2389)
Q Consensus 2202 d~~~~~~~~~d~---~atv~ni~VrsVAFsPdG~~LAS--GS~DgTIRLWDl~tGk----------------~l~Tl~vl 2260 (2389)
+...++|++.+. ..++.. +...++++| .++|. |+.||+|++||+.+++ ++.++
T Consensus 118 ~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--- 191 (355)
T 3vu4_A 118 GDVISVFKFGNPWKRITDDIR-FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--- 191 (355)
T ss_dssp TTEEEEEESSTTCCBSSCCEE-EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE---
T ss_pred cCEEEEEECCCCceeeEEecc-CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE---
Confidence 455666666433 222222 345567888 55555 7899999999998876 14444
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc-EEEeeCCCCCccCcccceeee-e-cCCCeeEEEEecCCCCEEEEe
Q 000080 2261 PAANVPPPYALASISALQFDHYGHRFASAALDGT-VCTWQLEVGGRSNVRPMESCL-C-FSSHAMDVSYITSSGSVIAAA 2337 (2389)
Q Consensus 2261 ~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT-VkLWDl~tggrs~~k~l~tl~-g-Hs~~V~sVAFSP~DGslLASA 2337 (2389)
.+|.+.|++|+|+|||++||||+.||+ |++||++++ +++.++. + |...|++++|+| ||++||++
T Consensus 192 -------~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-----~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~ 258 (355)
T 3vu4_A 192 -------KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-----VLVREFRRGLDRADVVDMKWST-DGSKLAVV 258 (355)
T ss_dssp -------CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-----CEEEEEECTTCCSCEEEEEECT-TSCEEEEE
T ss_pred -------EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-----cEEEEEEcCCCCCcEEEEEECC-CCCEEEEE
Confidence 257799999999999999999999999 999999987 4667777 6 999999999999 99999997
Q ss_pred ecCCCCCeEEEeeCCCCCCCceEEEEe---------------------ecCcEEEEeecccchhhhccc
Q 000080 2338 GHSSNGINVVVWDTLAPPTSSRASITC---------------------HEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2338 G~sS~D~TVrLWD~l~~tg~~v~sL~G---------------------H~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+.|++|+|||+..........+.+ +......+|.+++|+.++.-|
T Consensus 259 ---s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~ 324 (355)
T 3vu4_A 259 ---SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP 324 (355)
T ss_dssp ---ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET
T ss_pred ---ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe
Confidence 489999999984322222222211 122236788999988776654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-16 Score=182.76 Aligned_cols=175 Identities=17% Similarity=0.200 Sum_probs=134.1
Q ss_pred cceeeccccccccccccccC--CCCc--CceeEEEEEEc--CCCCeEEEEeCCCcEEEeecCCCceeeEeccc-------
Q 000080 2194 IGASALGWETQDDFEDYVDP--PATV--ENISTRAFSSH--PLRPFFLVGSSNTHIYLWEFGKDKATATYGVL------- 2260 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFs--PdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl------- 2260 (2389)
..++| +.|.+.++|+.... ..+. +.-.|.+++|+ |++++|++|+.|++|++||+.+++........
T Consensus 175 ~l~s~-s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 175 ILVSG-STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp EEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred EEEEE-eCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 66777 77888888876422 1111 22356888888 68899999999999999999887643221000
Q ss_pred --CCCC----CCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEE
Q 000080 2261 --PAAN----VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVI 2334 (2389)
Q Consensus 2261 --~gh~----~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslL 2334 (2389)
+..+ ....||...|.++ +|+|+.|++|+.||+|++||++++ +++..+.+|...|.+++|+| +|++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l 325 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM-----KCLYILSGHTDRIYSTIYDH-ERKRC 325 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEEET-TTTEE
T ss_pred eccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecCCCCCEEEEEEcC-CCCEE
Confidence 0000 0013567888877 789999999999999999999986 57788899999999999999 99999
Q ss_pred EEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2335 AAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2335 ASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
|++ +.|++|++||+ .++++++.+.+|.+.|.+++++ +++.++-
T Consensus 326 ~sg---~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 326 ISA---SMDTTIRIWDL--ENGELMYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp EEE---ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred EEE---eCCCcEEEEEC--CCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 997 48999999998 5678899999999999999997 4565553
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=168.80 Aligned_cols=142 Identities=12% Similarity=0.062 Sum_probs=122.6
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|++++| |++++||+|+.||+|++||+.+++....+. +|...|++++|+|+|+.||+|+.||+|++||+
T Consensus 20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY----------TGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp CEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE----------ECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee----------cCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 4599999 999999999999999999999888877764 35688999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc-cch
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK-LLN 2379 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~-~~~ 2379 (2389)
.... ..+++..+.+|...|.+++|. +++|+++ +.|++|++|| .++.+..+.+|.+.+.+++.++ +++
T Consensus 89 ~~~~--~~~~~~~~~~~~~~i~~~~~~---~~~l~~~---~~d~~i~~~d----~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 89 FATS--GEDPLYTLIGHQGNVCSLSFQ---DGVVISG---SWDKTAKVWK----EGSLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp TCCT--TSCC-CEECCCSSCEEEEEEE---TTEEEEE---ETTSEEEEEE----TTEEEEEEECCSSCEEEEEEEETTTT
T ss_pred eecC--CCCcccchhhcccCEEEEEec---CCEEEEE---eCCCCEEEEc----CCcEEEecccCCCceeEEEEccCCCC
Confidence 8752 235678889999999999994 4788886 4899999999 3567899999999999999988 888
Q ss_pred hhhccc
Q 000080 2380 FALSKC 2385 (2389)
Q Consensus 2380 ~~~s~~ 2385 (2389)
..++-+
T Consensus 157 ~l~~~~ 162 (313)
T 3odt_A 157 KFLTAS 162 (313)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776644
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=180.40 Aligned_cols=149 Identities=11% Similarity=0.083 Sum_probs=123.1
Q ss_pred CCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc
Q 000080 2215 ATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2389)
Q Consensus 2215 atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT 2294 (2389)
...+..+..-|+|+++ ++||+| .|++|||||..+|++++++. .| +|...|++|+|+|||++||+|+.||+
T Consensus 101 ~~~~d~y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~---~~-----~~~~~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 101 EIRNDYYLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQ---ME-----QPGEYISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp TCCCCTTCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEE---CC-----STTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CCcccccceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEE---ec-----CCCCcEEEEEECCCCCEEEEEECCCe
Confidence 3333333456799986 477766 59999999999999988875 22 46688999999999999999999999
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
|+|||++++ +.+.++.+|...+.++++++ .+|+++ +.|+++++||.. .....+..+.+|...+..+..
T Consensus 171 v~iWd~~~~-----~~~~~~~~h~~~v~~~s~~~---~~l~sg---s~d~~i~~~d~~-~~~~~~~~~~~h~~~~~~~~~ 238 (420)
T 4gga_A 171 VQLWDVQQQ-----KRLRNMTSHSARVGSLSWNS---YILSSG---SRSGHIHHHDVR-VAEHHVATLSGHSQEVCGLRW 238 (420)
T ss_dssp EEEEETTTT-----EEEEEECCCSSCEEEEEEET---TEEEEE---ETTSEEEEEETT-SSSCEEEEEECCSSCEEEEEE
T ss_pred EEEEEcCCC-----cEEEEEeCCCCceEEEeeCC---CEEEEE---eCCCceeEeeec-ccceeeEEecccccceeeeee
Confidence 999999986 57788999999999887765 889986 589999999984 234457899999999999999
Q ss_pred cccchhhhccc
Q 000080 2375 LKLLNFALSKC 2385 (2389)
Q Consensus 2375 ~~~~~~~~s~~ 2385 (2389)
+++|+..++-+
T Consensus 239 ~~~g~~l~s~~ 249 (420)
T 4gga_A 239 APDGRHLASGG 249 (420)
T ss_dssp CTTSSEEEEEE
T ss_pred cCCCCeeeeee
Confidence 99999887654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-16 Score=198.87 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=140.8
Q ss_pred ccceeeccccccccccccccC----CCCc--CceeEEEEEEcCC--CCeEEEEeCCCcEEEeecCCCc--eeeEecccCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP----PATV--ENISTRAFSSHPL--RPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPA 2262 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~----~atv--~ni~VrsVAFsPd--G~~LASGS~DgTIRLWDl~tGk--~l~Tl~vl~g 2262 (2389)
...|+| +.|...++|+.... ..++ +.-.|++++|+|+ |++|+||+.||+|++||+.+++ .+..+.
T Consensus 22 ~~latg-~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~---- 96 (753)
T 3jro_A 22 KRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA---- 96 (753)
T ss_dssp CCEEEE-ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC----
T ss_pred CeEEEE-ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc----
Confidence 466777 77778888876411 1111 1236799999998 9999999999999999999887 444442
Q ss_pred CCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC-----------
Q 000080 2263 ANVPPPYALASISALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS----------- 2329 (2389)
Q Consensus 2263 h~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~----------- 2329 (2389)
+|...|++|+|+|+ |+.|++|+.||+|++||++++. ......+.+|...|.+++|+|.
T Consensus 97 ------~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~---~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~ 167 (753)
T 3jro_A 97 ------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG---TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167 (753)
T ss_dssp ------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS---CCCCEEEECCSSCEEEEEECCCC---------C
T ss_pred ------CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC---CcceeEeecCCCceEEEEecCcccccccccccC
Confidence 46789999999999 9999999999999999999863 1345677899999999999994
Q ss_pred -CCCEEEEeecCCCCCeEEEeeCCCCCC--CceEEEEeecCcEEEEeeccc---chhhhccc
Q 000080 2330 -SGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEGLYDLFLPLKL---LNFALSKC 2385 (2389)
Q Consensus 2330 -DGslLASAG~sS~D~TVrLWD~l~~tg--~~v~sL~GH~~~V~svA~~~~---~~~~~s~~ 2385 (2389)
+|.+|+++ +.|++|++||+..... ..+..+.+|.+.|++++++|+ |+++++-+
T Consensus 168 ~d~~~l~sg---s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 168 KESRKFVTG---GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp GGGCCEEEE---ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred CCCCEEEEE---ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 48999997 4899999999842211 446788999999999999999 88887643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=190.01 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=117.4
Q ss_pred eEEEEEEcCCCCeEE----EEeCCCcEEEeecCCC--------ceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEE
Q 000080 2221 STRAFSSHPLRPFFL----VGSSNTHIYLWEFGKD--------KATATYGVLPAANVPPPYALASISALQFDHY-GHRFA 2287 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LA----SGS~DgTIRLWDl~tG--------k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LA 2287 (2389)
.|++++|+|+|++|| ||+.|++|++||+.++ +.+..+..+ .||...|++|+|+|+ ++.||
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-------~~h~~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-------KDAGGMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-------CSGGGSEEEEEECSSCTTEEE
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-------CCCCCceEEEEECCCCCCEEE
Confidence 368999999999999 8999999999998765 222333322 356789999999998 89999
Q ss_pred EEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecC
Q 000080 2288 SAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2389)
Q Consensus 2288 SgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~ 2367 (2389)
+|+.||+|++||++++ .......+|...|.+++|+| +|++||+| +.|++|++||+. ++....+..|..
T Consensus 167 s~s~Dg~v~iwD~~~~-----~~~~~~~~~~~~v~~v~wsp-dg~~lasg---s~dg~v~iwd~~---~~~~~~~~~~~~ 234 (434)
T 2oit_A 167 VCLADGSIAVLQVTET-----VKVCATLPSTVAVTSVCWSP-KGKQLAVG---KQNGTVVQYLPT---LQEKKVIPCPPF 234 (434)
T ss_dssp EEETTSCEEEEEESSS-----EEEEEEECGGGCEEEEEECT-TSSCEEEE---ETTSCEEEECTT---CCEEEEECCCTT
T ss_pred EEECCCeEEEEEcCCC-----cceeeccCCCCceeEEEEcC-CCCEEEEE---cCCCcEEEEccC---CcccccccCCcc
Confidence 9999999999999985 23455667999999999999 89999997 489999999972 455666766543
Q ss_pred -------cEEEEeecccchhhhc
Q 000080 2368 -------LYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2368 -------~V~svA~~~~~~~~~s 2383 (2389)
.|.++++++++.|+++
T Consensus 235 ~~~~~~~~v~~v~w~~~~~~l~~ 257 (434)
T 2oit_A 235 YESDHPVRVLDVLWIGTYVFAIV 257 (434)
T ss_dssp CCTTSCEEEEEEEEEETTEEEEE
T ss_pred cCCCCceeEEEEEEecCceEEEE
Confidence 7899999998888744
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-16 Score=197.64 Aligned_cols=148 Identities=18% Similarity=0.108 Sum_probs=125.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCC--CceeeEecccCCCCCCCCCCCCCEEEEEECCC--CCEEEEEeCCCcEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGK--DKATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVC 2296 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~t--Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD--G~~LASgS~DgTVk 2296 (2389)
.|++++|+|+|++|++|+.||+|++||+.+ ++.+.++. +|.+.|++|+|+|+ |+.||+|+.||+|+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~----------~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc----------CCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 569999999999999999999999999974 45566653 56789999999998 99999999999999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCC--CCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~D--GslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
+||++++. ......+.+|...|.+++|+| + |++++++ +.|++|++||+..........+.+|...|.++++
T Consensus 81 vwd~~~~~---~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sg---s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~ 153 (753)
T 3jro_A 81 IWKEENGR---WSQIAVHAVHSASVNSVQWAP-HEYGPLLLVA---SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (753)
T ss_dssp EEEEETTE---EEEEEEECCCSSCEEEEEECC-GGGCSEEEEE---ETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE
T ss_pred EEECCCCc---ccccccccCCCCCeEEEEECC-CCCCCEEEEE---eCCCcEEEEEeecCCCcceeEeecCCCceEEEEe
Confidence 99999862 236778889999999999999 7 9999997 4899999999853323446788999999999999
Q ss_pred cc-------------cchhhhccc
Q 000080 2375 LK-------------LLNFALSKC 2385 (2389)
Q Consensus 2375 ~~-------------~~~~~~s~~ 2385 (2389)
+| +|+.+++-+
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs 177 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGG 177 (753)
T ss_dssp CCCC---------CGGGCCEEEEE
T ss_pred cCcccccccccccCCCCCEEEEEE
Confidence 99 577776644
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-16 Score=172.79 Aligned_cols=134 Identities=9% Similarity=-0.004 Sum_probs=114.5
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCc---eeeEecccCCCCCCCCCCCCCEEEEEECCCCC-EEEEEeCCCcEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVC 2296 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk---~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~-~LASgS~DgTVk 2296 (2389)
.|.+++|+|+|++|++|+.|++|++||+.+++ ....+. +|...|++++|+|+|+ .|++|+.||+|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----------RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE----------ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee----------ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 46999999999999999999999999998887 222321 3668899999999999 999999999999
Q ss_pred EeeC-CCCCccCcccceeeee--cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCC---------CCceEEEEe
Q 000080 2297 TWQL-EVGGRSNVRPMESCLC--FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP---------TSSRASITC 2364 (2389)
Q Consensus 2297 LWDl-~tggrs~~k~l~tl~g--Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~t---------g~~v~sL~G 2364 (2389)
+||+ +++ ....+.+ |...|.+++|+| +++|+++ +.|++|++||+. + +++++.+.
T Consensus 83 ~wd~~~~~------~~~~~~~~~~~~~v~~l~~~~--~~~l~s~---~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~- 148 (342)
T 1yfq_A 83 KVDLIGSP------SFQALTNNEANLGICRICKYG--DDKLIAA---SWDGLIEVIDPR--NYGDGVIAVKNLNSNNTK- 148 (342)
T ss_dssp EECSSSSS------SEEECBSCCCCSCEEEEEEET--TTEEEEE---ETTSEEEEECHH--HHTTBCEEEEESCSSSSS-
T ss_pred EEEeccCC------ceEeccccCCCCceEEEEeCC--CCEEEEE---cCCCeEEEEccc--ccccccccccCCeeeEEe-
Confidence 9999 865 2366778 999999999999 7889887 489999999973 4 55566666
Q ss_pred ecCcEEEEeecccc
Q 000080 2365 HEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2365 H~~~V~svA~~~~~ 2378 (2389)
|.+.|.++++++++
T Consensus 149 ~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR 162 (342)
T ss_dssp SCCCEEEEEECSSE
T ss_pred eCCceEEEEecCCc
Confidence 99999999999988
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=175.45 Aligned_cols=147 Identities=9% Similarity=-0.045 Sum_probs=117.5
Q ss_pred EEEEEEcCCCCeE-EEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-----------------
Q 000080 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG----------------- 2283 (2389)
Q Consensus 2222 VrsVAFsPdG~~L-ASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG----------------- 2283 (2389)
+..+++.++++.+ ++|+.|++|++||+.+|+++.++. |...|.+|+|+|++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-----------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~ 129 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-----------VDAPVKDLFLSREFIVVSYGDVISVFKFGNP 129 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-----------CSSCEEEEEECSSEEEEEETTEEEEEESSTT
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-----------CCCceEEEEEcCCEEEEEEcCEEEEEECCCC
Confidence 3567888888876 578889999999999999888774 23578888888864
Q ss_pred ------------------CEEEE--EeCCCcEEEeeCCCCCc----------cCccc-ceeeeecCCCeeEEEEecCCCC
Q 000080 2284 ------------------HRFAS--AALDGTVCTWQLEVGGR----------SNVRP-MESCLCFSSHAMDVSYITSSGS 2332 (2389)
Q Consensus 2284 ------------------~~LAS--gS~DgTVkLWDl~tggr----------s~~k~-l~tl~gHs~~V~sVAFSP~DGs 2332 (2389)
+.+|. |+.||+|++||++++.. ...++ +..+.+|.+.|.+++|+| ||+
T Consensus 130 ~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~ 208 (355)
T 3vu4_A 130 WKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSD 208 (355)
T ss_dssp CCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSS
T ss_pred ceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCC
Confidence 34444 57889999999987520 00123 678899999999999999 999
Q ss_pred EEEEeecCCCCCe-EEEeeCCCCCCCceEEEE-e-ecCcEEEEeecccchhhhccc
Q 000080 2333 VIAAAGHSSNGIN-VVVWDTLAPPTSSRASIT-C-HEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2333 lLASAG~sS~D~T-VrLWD~l~~tg~~v~sL~-G-H~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+|||+ +.|++ |+|||+ .++++++.+. | |.+.|++++++|+|++.++-+
T Consensus 209 ~l~s~---s~d~~~v~iwd~--~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 209 MVATC---SQDGTIIRVFKT--EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp EEEEE---ETTCSEEEEEET--TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred EEEEE---eCCCCEEEEEEC--CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 99997 48999 999998 5788899998 6 999999999999999987643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=176.29 Aligned_cols=163 Identities=14% Similarity=0.164 Sum_probs=132.1
Q ss_pred ccceeeccccccccccccccCCCC-------cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPAT-------VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~at-------v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
++.++| +.|...++|+....... -+...|.+++| ++++|++|+.|++|++||+.+++++.++.
T Consensus 224 ~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------- 293 (435)
T 1p22_A 224 GMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN------- 293 (435)
T ss_dssp TEEEEE-ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-------
T ss_pred CEEEEe-eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-------
Confidence 466777 77777788876432111 11236688888 88999999999999999999999998884
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCe
Q 000080 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~T 2345 (2389)
+|...|.+++| +|+.+++|+.||+|++||++++ +++.++.+|...|.+++| +|++||+| +.|++
T Consensus 294 ---~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~---~~~~l~sg---~~dg~ 357 (435)
T 1p22_A 294 ---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLRVLEGHEELVRCIRF---DNKRIVSG---AYDGK 357 (435)
T ss_dssp ---CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEC---CSSEEEEE---ETTSC
T ss_pred ---CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-----CEEEEEeCCcCcEEEEEe---cCCEEEEE---eCCCc
Confidence 46688999999 5789999999999999999986 467888999999999998 46899987 48999
Q ss_pred EEEeeCCCCCCC---------ceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2346 VVVWDTLAPPTS---------SRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2346 VrLWD~l~~tg~---------~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|+|||+. +++ +++.+.+|.+.|.++++ +|++.++-+
T Consensus 358 i~vwd~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 358 IKVWDLV--AALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEEEEHH--HHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred EEEEECC--CCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEe
Confidence 9999973 222 68999999999999999 677766543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=171.95 Aligned_cols=164 Identities=13% Similarity=0.158 Sum_probs=128.6
Q ss_pred ccceeeccccccccccccccC--CCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP--PATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
...|+| +.|...++|+.... ..++ +...|.+++| ++++|++|+.||+|++||+.+++++.++.
T Consensus 144 ~~l~~g-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---------- 210 (435)
T 1p22_A 144 QKIVSG-LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI---------- 210 (435)
T ss_dssp SEEEEE-ESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC----------
T ss_pred CEEEEE-eCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc----------
Confidence 345555 56666666665321 1111 1235688888 88999999999999999999999988874
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEE
Q 000080 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2389)
Q Consensus 2269 GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrL 2348 (2389)
+|...|.+++|++ +.|++|+.||+|++||++++. .......+.+|...|.+++| +|++||+| +.|++|++
T Consensus 211 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~---~~~~l~s~---~~dg~i~v 280 (435)
T 1p22_A 211 HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRAAVNVVDF---DDKYIVSA---SGDRTIKV 280 (435)
T ss_dssp CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSS--CCEEEEEECCCSSCEEEEEE---ETTEEEEE---ETTSEEEE
T ss_pred CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCC--CceeeeEecCCCCcEEEEEe---CCCEEEEE---eCCCeEEE
Confidence 4678899999974 599999999999999999863 22333678899999999999 35899987 48999999
Q ss_pred eeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2349 WDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2349 WD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
||+ .++++++.+.+|.+.|.++++. ++..++
T Consensus 281 wd~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 311 (435)
T 1p22_A 281 WNT--STCEFVRTLNGHKRGIACLQYR--DRLVVS 311 (435)
T ss_dssp EET--TTCCEEEEEECCSSCEEEEEEE--TTEEEE
T ss_pred EEC--CcCcEEEEEcCCCCcEEEEEeC--CCEEEE
Confidence 998 5678899999999999999984 555554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.4e-15 Score=173.39 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=127.7
Q ss_pred cceeeccccccccccccccC--CCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCC
Q 000080 2194 IGASALGWETQDDFEDYVDP--PATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPY 2269 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~G 2269 (2389)
..|+| +.|...++|+.... ..++ +...|++++|+ +.+|++|+.|++|++||+.+++++.++. +
T Consensus 131 ~l~sg-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------~ 197 (445)
T 2ovr_B 131 RIVSG-SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY----------G 197 (445)
T ss_dssp EEEEE-ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC----------C
T ss_pred EEEEE-ECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC----------C
Confidence 34555 55666666655311 1111 12356899998 5699999999999999999999988874 4
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEe
Q 000080 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLW 2349 (2389)
|...|.+++|+ ++.|++|+.||+|++||++++ +++..+.+|...|.+++| +|++||++ +.|++|++|
T Consensus 198 h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~---~~~~l~~~---~~dg~i~iw 264 (445)
T 2ovr_B 198 HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-----QCLHVLMGHVAAVRCVQY---DGRRVVSG---AYDFMVKVW 264 (445)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-----CEEEEEECCSSCEEEEEE---CSSCEEEE---ETTSCEEEE
T ss_pred CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-----cEEEEEcCCcccEEEEEE---CCCEEEEE---cCCCEEEEE
Confidence 67889999995 678999999999999999986 467788899999999998 46788886 489999999
Q ss_pred eCCCCCCCceEEEEeecCcEEEEeecccchhhhccc
Q 000080 2350 DTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2350 D~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
|+ .+++++..+.+|.+.|.++++ +|+++++-+
T Consensus 265 d~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 265 DP--ETETCLHTLQGHTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp EG--GGTEEEEEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred EC--CCCcEeEEecCCCCceEEEEE--CCCEEEEEe
Confidence 97 467788999999999999998 677766543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=169.44 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=131.9
Q ss_pred cccceeeccccccccccccccC--CCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC
Q 000080 2192 AGIGASALGWETQDDFEDYVDP--PATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP 2267 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~ 2267 (2389)
....++| +.|...++|+.... ..++ +...|.+++| ++.++++|+.|++|++||+.+++++.++.
T Consensus 249 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------- 316 (445)
T 2ovr_B 249 GRRVVSG-AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT--------- 316 (445)
T ss_dssp SSCEEEE-ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC---------
T ss_pred CCEEEEE-cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc---------
Confidence 4456666 66777777765321 1111 1235688888 89999999999999999999999998874
Q ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeee---cCCCeeEEEEecCCCCEEEEeecCCCCC
Q 000080 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC---FSSHAMDVSYITSSGSVIAAAGHSSNGI 2344 (2389)
Q Consensus 2268 ~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g---Hs~~V~sVAFSP~DGslLASAG~sS~D~ 2344 (2389)
+|...|.++++ +|+.|++|+.||+|++||++++ +++.++.+ |...|.+++|++ ++||++ +.|+
T Consensus 317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~---~~dg 382 (445)
T 2ovr_B 317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-----QCLQTLQGPNKHQSAVTCLQFNK---NFVITS---SDDG 382 (445)
T ss_dssp -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-----CEEEEECSTTSCSSCEEEEEECS---SEEEEE---ETTS
T ss_pred -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-----cEEEEEccCCCCCCCEEEEEECC---CEEEEE---eCCC
Confidence 35678888777 5789999999999999999986 35666665 889999999965 789987 4899
Q ss_pred eEEEeeCCCCCCCceEEE-----EeecCcEEEEeecccchhhhccc
Q 000080 2345 NVVVWDTLAPPTSSRASI-----TCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2345 TVrLWD~l~~tg~~v~sL-----~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+|+|||+ .+++.++.+ .+|.+.|++++++|+|.++.+-+
T Consensus 383 ~v~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~ 426 (445)
T 2ovr_B 383 TVKLWDL--KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426 (445)
T ss_dssp EEEEEET--TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred eEEEEEC--CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence 9999998 567788888 47999999999999999876543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=158.85 Aligned_cols=139 Identities=8% Similarity=0.024 Sum_probs=112.3
Q ss_pred eEEEEEEcCCCCeE-EEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE-EEeCCCcEEEe
Q 000080 2221 STRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~L-ASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA-SgS~DgTVkLW 2298 (2389)
.+++++|+|+|++| ++++.|++|++||+.+++.+.++. . | ..|.+++|+|||++|+ +++.|++|++|
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~---~-------~-~~v~~~~~spdg~~l~~~~~~~~~v~v~ 101 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---A-------G-SSPQGVAVSPDGKQVYVTNMASSTLSVI 101 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---C-------S-SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE---C-------C-CCccceEECCCCCEEEEEECCCCEEEEE
Confidence 35899999999976 788899999999999999988874 1 2 3799999999999875 55577999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
|++++ +....+.. ...+.+++|+| +|+.|+.++ +.|++|++||+ .+++.+..+..| ..+.+++++|+|
T Consensus 102 d~~~~-----~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~--~~~~~v~~~d~--~~~~~~~~~~~~-~~~~~~~~~~dg 169 (391)
T 1l0q_A 102 DTTSN-----TVAGTVKT-GKSPLGLALSP-DGKKLYVTN--NGDKTVSVINT--VTKAVINTVSVG-RSPKGIAVTPDG 169 (391)
T ss_dssp ETTTT-----EEEEEEEC-SSSEEEEEECT-TSSEEEEEE--TTTTEEEEEET--TTTEEEEEEECC-SSEEEEEECTTS
T ss_pred ECCCC-----eEEEEEeC-CCCcceEEECC-CCCEEEEEe--CCCCEEEEEEC--CCCcEEEEEecC-CCcceEEECCCC
Confidence 99986 34455544 45789999999 889774333 58999999998 466778888866 456999999999
Q ss_pred hhhh
Q 000080 2379 NFAL 2382 (2389)
Q Consensus 2379 ~~~~ 2382 (2389)
++++
T Consensus 170 ~~l~ 173 (391)
T 1l0q_A 170 TKVY 173 (391)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 8763
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-14 Score=164.29 Aligned_cols=147 Identities=7% Similarity=-0.062 Sum_probs=121.2
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
.+++|+|++.++++++.|++|++||+.+|+.++.... + ...+|...|++++|+|+|+.+++++.|++|++||+++
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~---~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP--E---KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC--H---HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc--c---cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 4679999888999999999999999999988764321 0 0125678999999999999999999999999999998
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
+ +...++..|...+.+++|+| +|+.+++++ +.|++|++||+ .+++.+..+..| ..+.+++++|+|++++
T Consensus 201 ~-----~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~--~~~~~i~~~d~--~~~~~~~~~~~~-~~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 201 L-----AYKATVDLTGKWSKILLYDP-IRDLVYCSN--WISEDISVIDR--KTKLEIRKTDKI-GLPRGLLLSKDGKELY 269 (433)
T ss_dssp C-----CEEEEEECSSSSEEEEEEET-TTTEEEEEE--TTTTEEEEEET--TTTEEEEECCCC-SEEEEEEECTTSSEEE
T ss_pred c-----eEEEEEcCCCCCeeEEEEcC-CCCEEEEEe--cCCCcEEEEEC--CCCcEEEEecCC-CCceEEEEcCCCCEEE
Confidence 6 35677778999999999999 888886554 57999999998 456667777754 5699999999998877
Q ss_pred ccc
Q 000080 2383 SKC 2385 (2389)
Q Consensus 2383 s~~ 2385 (2389)
.-+
T Consensus 270 ~~~ 272 (433)
T 3bws_A 270 IAQ 272 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 644
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.4e-13 Score=152.44 Aligned_cols=142 Identities=12% Similarity=0.054 Sum_probs=114.2
Q ss_pred eEEEEEEcCCCCeE-EEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEe
Q 000080 2221 STRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~L-ASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLW 2298 (2389)
.+.+++|+|+|++| ++++.|++|++||+.+++.+..+. . ...+.+++|+|||+.| ++++.|++|++|
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~--------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---T--------GKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---C--------SSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---C--------CCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 56899999999976 566678999999999999887764 1 2568999999999977 788899999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~ 2378 (2389)
|++++ +....+..| ..+.+++|+| +|+.|+.++ +.|++|++||+ .+++++..+. |...+.+++++|+|
T Consensus 144 d~~~~-----~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~--~~~~~v~~~d~--~~~~~~~~~~-~~~~~~~~~~~~~g 211 (391)
T 1l0q_A 144 NTVTK-----AVINTVSVG-RSPKGIAVTP-DGTKVYVAN--FDSMSISVIDT--VTNSVIDTVK-VEAAPSGIAVNPEG 211 (391)
T ss_dssp ETTTT-----EEEEEEECC-SSEEEEEECT-TSSEEEEEE--TTTTEEEEEET--TTTEEEEEEE-CSSEEEEEEECTTS
T ss_pred ECCCC-----cEEEEEecC-CCcceEEECC-CCCEEEEEe--CCCCEEEEEEC--CCCeEEEEEe-cCCCccceEECCCC
Confidence 99986 345555555 4679999999 888774433 58899999998 4556666665 67789999999999
Q ss_pred hhhhccc
Q 000080 2379 NFALSKC 2385 (2389)
Q Consensus 2379 ~~~~s~~ 2385 (2389)
++++.-+
T Consensus 212 ~~l~~~~ 218 (391)
T 1l0q_A 212 TKAYVTN 218 (391)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 9877543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-13 Score=158.56 Aligned_cols=142 Identities=10% Similarity=0.010 Sum_probs=114.0
Q ss_pred eEEEEEEcCCCCeEEEEeCCC---cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE-EEeCCCc--
Q 000080 2221 STRAFSSHPLRPFFLVGSSNT---HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGT-- 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~Dg---TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA-SgS~DgT-- 2294 (2389)
.|.+++|||||+.||+++.|+ +|++||+.+|++.. +. +|...|.+++|||||++|| +++.|+.
T Consensus 180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~----------~~~~~~~~~~~spdg~~la~~~~~~g~~~ 248 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA----------SFPRHNGAPAFSPDGSKLAFALSKTGSLN 248 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE----------CCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-ee----------cCCCcccCEEEcCCCCEEEEEEecCCCce
Confidence 568999999999999999886 99999999998754 32 2446799999999999998 7777665
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC--eEEEeeCCCCCCCceEEEEeecCcEEEE
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGLYDLF 2372 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~--TVrLWD~l~~tg~~v~sL~GH~~~V~sv 2372 (2389)
|++||++++. ...+..|...+.+++|+| ||+.||+++ ..|+ .|.+||+ .++ .+..+..|...+.++
T Consensus 249 i~~~d~~~~~------~~~l~~~~~~~~~~~~sp-dg~~l~~~s--~~~g~~~i~~~d~--~~~-~~~~l~~~~~~~~~~ 316 (415)
T 2hqs_A 249 LYVMDLASGQ------IRQVTDGRSNNTEPTWFP-DSQNLAFTS--DQAGRPQVYKVNI--NGG-APQRITWEGSQNQDA 316 (415)
T ss_dssp EEEEETTTCC------EEECCCCSSCEEEEEECT-TSSEEEEEE--CTTSSCEEEEEET--TSS-CCEECCCSSSEEEEE
T ss_pred EEEEECCCCC------EEeCcCCCCcccceEECC-CCCEEEEEE--CCCCCcEEEEEEC--CCC-CEEEEecCCCcccCe
Confidence 9999998762 356678889999999999 999999864 2345 5677786 333 356677788899999
Q ss_pred eecccchhhhccc
Q 000080 2373 LPLKLLNFALSKC 2385 (2389)
Q Consensus 2373 A~~~~~~~~~s~~ 2385 (2389)
+++|+|++++.-.
T Consensus 317 ~~spdG~~l~~~~ 329 (415)
T 2hqs_A 317 DVSSDGKFMVMVS 329 (415)
T ss_dssp EECTTSSEEEEEE
T ss_pred EECCCCCEEEEEE
Confidence 9999999877543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=156.36 Aligned_cols=142 Identities=8% Similarity=0.000 Sum_probs=115.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLWD 2299 (2389)
.|.+++|+|+|+++++++.|++|++||+.+++.+.++. +|...+.+++|+|||+.+ ++++.|++|++||
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD----------LTGKWSKILLYDPIRDLVYCSNWISEDISVID 240 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE----------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc----------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence 57999999999999999999999999999999888774 255789999999999988 5556899999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC-----CCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS-----NGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS-----~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
++++ +....+..+ ..+.+++|+| +|+.|++++.+. .|++|++||+ .+++.+.. ..|.+.+.++++
T Consensus 241 ~~~~-----~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~--~~~~~~~~-~~~~~~~~~~~~ 310 (433)
T 3bws_A 241 RKTK-----LEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSM--DKEKLIDT-IGPPGNKRHIVS 310 (433)
T ss_dssp TTTT-----EEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEET--TTTEEEEE-EEEEECEEEEEE
T ss_pred CCCC-----cEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEEC--CCCcEEee-ccCCCCcceEEE
Confidence 9976 344555444 4589999999 999999875322 4889999998 34454444 468889999999
Q ss_pred cccchhhh
Q 000080 2375 LKLLNFAL 2382 (2389)
Q Consensus 2375 ~~~~~~~~ 2382 (2389)
+|+|++++
T Consensus 311 ~~~g~~l~ 318 (433)
T 3bws_A 311 GNTENKIY 318 (433)
T ss_dssp CSSTTEEE
T ss_pred CCCCCEEE
Confidence 99998653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=164.42 Aligned_cols=153 Identities=6% Similarity=-0.068 Sum_probs=115.5
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCC----------ceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE----
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD----------KATATYGVLPAANVPPPYALASISALQFDHYGHRFA---- 2287 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tG----------k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA---- 2287 (2389)
+..++++|++.++++|+.|+ |++|+..+- ..+.... +... ..|...|++|+|+|||++||
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV--QGLL---VPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC--CCEE---ECCSSCEEEEEECTTSCEEEEEEE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccC--cccc---ccCCCcccEEEEcCCCCEEEEEEe
Confidence 36679999999999999998 999885311 0111111 0000 11346799999999999999
Q ss_pred EEeCCCcEEEeeCCCC-----Cc-cCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEE
Q 000080 2288 SAALDGTVCTWQLEVG-----GR-SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS 2361 (2389)
Q Consensus 2288 SgS~DgTVkLWDl~tg-----gr-s~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~s 2361 (2389)
+|+.|++|++||++++ .. .....+..+.+|...|.+++|+|.++++||++ +.|++|+|||+. ++..+..
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~---s~Dg~v~iwD~~--~~~~~~~ 187 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC---LADGSIAVLQVT--ETVKVCA 187 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE---ETTSCEEEEEES--SSEEEEE
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE---ECCCeEEEEEcC--CCcceee
Confidence 8999999999999764 00 01112456678999999999999548999997 489999999983 4556677
Q ss_pred EEeecCcEEEEeecccchhhhccc
Q 000080 2362 ITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2362 L~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
..+|...|++++.+|+|++.++-+
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs 211 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGK 211 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEE
T ss_pred ccCCCCceeEEEEcCCCCEEEEEc
Confidence 788999999999999999887654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-13 Score=168.77 Aligned_cols=144 Identities=6% Similarity=-0.098 Sum_probs=111.1
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC---------C
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---------G 2293 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D---------g 2293 (2389)
.+++|+|||+++++ +.|++|++||+.+|++...+. +|. .+...|.+++|||||++||+++.| +
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~---~~~----~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIE---GKK----IESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC---TTT----TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEec---ccc----ccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 56699999998877 789999999999998877663 221 111259999999999999999885 7
Q ss_pred cEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcE----
Q 000080 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLY---- 2369 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V---- 2369 (2389)
+|.+||++++. .+.+....+|...+..++||| ||+.||+++ +++|++||+ .+++..+....|...+
T Consensus 92 ~i~~~d~~~~~---~~~l~~~~~~~~~~~~~~~SP-dG~~la~~~----~~~i~~~~~--~~g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 92 YYVLSKIPHGD---PQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF----ENNIYYCAH--VGKQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp EEEEEESSSCC---CEECCCTTCCSCCCSBCCBCS-STTCEEEEE----TTEEEEESS--SSSCCEEEECCCBTTTEEEE
T ss_pred eEEEEECCCCc---eEeccCCccccccccccEECC-CCCEEEEEE----CCeEEEEEC--CCCceEEEecCCCCCceECc
Confidence 78899999863 133444455666688999999 999999863 479999998 4566666655555444
Q ss_pred --------------EEEeecccchhhhcc
Q 000080 2370 --------------DLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2370 --------------~svA~~~~~~~~~s~ 2384 (2389)
.+++++|+|++++.-
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 899999999987653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=161.99 Aligned_cols=145 Identities=11% Similarity=0.060 Sum_probs=112.1
Q ss_pred eEEEEEEcCCCCeEEEEeC-CC-----cEEEeecCCCceeeEecccCCCCCCCCCCC----------------------C
Q 000080 2221 STRAFSSHPLRPFFLVGSS-NT-----HIYLWEFGKDKATATYGVLPAANVPPPYAL----------------------A 2272 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~-Dg-----TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~----------------------~ 2272 (2389)
.|++++|+|||++|++++. |+ +|++||+.+|+..+.+. .+ ++. .
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD---SK-----VVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC---GG-----GTC--------------------CCE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccc---hh-----hcccccccccchhhhhhhhhhhcccc
Confidence 3488999999999999998 88 99999999998776653 11 111 2
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2273 SISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2273 ~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
.|.+++|||||++||+++. ++|++||+.+++ . .....+..|...+.+++||| ||++||++ .+++|++||+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~--~-~~~~~l~~~~~~~~~~~~SP-DG~~la~~----~~~~i~~~d~- 179 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEG--K-AAVRQLTHGEGFATDAKLSP-KGGFVSFI----RGRNLWVIDL- 179 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCS--T-TSCCBCCCSSSCEEEEEECT-TSSEEEEE----ETTEEEEEET-
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCC--c-ceEEEcccCCcccccccCCC-CCCEEEEE----eCCcEEEEec-
Confidence 3789999999999999997 999999998751 0 02345667888999999999 99999986 3569999997
Q ss_pred CCCCCceEEEEeecCc----------------EEEEeecccchhhhcc
Q 000080 2353 APPTSSRASITCHEGL----------------YDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2353 ~~tg~~v~sL~GH~~~----------------V~svA~~~~~~~~~s~ 2384 (2389)
.+++..+....+... +.+++++|+|++++.-
T Consensus 180 -~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~ 226 (741)
T 2ecf_A 180 -ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYA 226 (741)
T ss_dssp -TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEE
T ss_pred -CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEE
Confidence 344444433444432 4789999999987654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=136.95 Aligned_cols=144 Identities=12% Similarity=-0.003 Sum_probs=109.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCC-CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe--CCCcEEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--LDGTVCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS--~DgTVkL 2297 (2389)
.|.+++|+|||++|++++ |+.|++||+.+ ++....+. ++ +...|.+++|+|||++|++++ .|+.++|
T Consensus 43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~---~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT---GF------ATICNNDHGISPDGALYAISDKVEFGKSAI 112 (297)
T ss_dssp CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC---TT------CCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc---cc------ccccccceEECCCCCEEEEEEeCCCCcceE
Confidence 458999999999999987 78999999988 77655442 21 236789999999999999999 5567777
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
|.+...+ .....+..+. .+..++|+| ||+.|+.++ +.|++++||++... +.....+..|...+.+++++|+
T Consensus 113 ~~~~~~~----~~~~~~~~~~-~~~~~~~sp-dg~~l~~~~--~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~s~d 183 (297)
T 2ojh_A 113 YLLPSTG----GTPRLMTKNL-PSYWHGWSP-DGKSFTYCG--IRDQVFDIYSMDID-SGVETRLTHGEGRNDGPDYSPD 183 (297)
T ss_dssp EEEETTC----CCCEECCSSS-SEEEEEECT-TSSEEEEEE--EETTEEEEEEEETT-TCCEEECCCSSSCEEEEEECTT
T ss_pred EEEECCC----CceEEeecCC-CccceEECC-CCCEEEEEE--CCCCceEEEEEECC-CCcceEcccCCCccccceECCC
Confidence 7665322 1233444343 488999999 899888433 47899999997422 3456778889999999999999
Q ss_pred chhhhc
Q 000080 2378 LNFALS 2383 (2389)
Q Consensus 2378 ~~~~~s 2383 (2389)
|++++.
T Consensus 184 g~~l~~ 189 (297)
T 2ojh_A 184 GRWIYF 189 (297)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 997653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=148.01 Aligned_cols=142 Identities=9% Similarity=0.024 Sum_probs=109.3
Q ss_pred eEEEEEEcCCCCeEE-EEeCCCc--EEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CC--c
Q 000080 2221 STRAFSSHPLRPFFL-VGSSNTH--IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DG--T 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LA-SGS~DgT--IRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-Dg--T 2294 (2389)
.+.+++|+|||+.|| +++.|+. |++||+.+++.. .+. +|...+.+++|||||++|+.++. |+ .
T Consensus 224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~----------~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT----------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC----------CCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc----------CCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 458999999999888 7777665 999999888763 332 24578999999999999999887 45 5
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
|.+||+.++. ...+..|...+.+++|+| ||++||+++....+.+|++||+ .+++ +..+..|. .+.++++
T Consensus 293 i~~~d~~~~~------~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~--~~~~-~~~l~~~~-~~~~~~~ 361 (415)
T 2hqs_A 293 VYKVNINGGA------PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDL--ATGG-VQVLSSTF-LDETPSL 361 (415)
T ss_dssp EEEEETTSSC------CEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEET--TTCC-EEECCCSS-SCEEEEE
T ss_pred EEEEECCCCC------EEEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEEC--CCCC-EEEecCCC-CcCCeEE
Confidence 7777888752 344556778899999999 9999998752212468999997 3444 46677675 8999999
Q ss_pred cccchhhhcc
Q 000080 2375 LKLLNFALSK 2384 (2389)
Q Consensus 2375 ~~~~~~~~s~ 2384 (2389)
+|+|++++.-
T Consensus 362 spdg~~l~~~ 371 (415)
T 2hqs_A 362 APNGTMVIYS 371 (415)
T ss_dssp CTTSSEEEEE
T ss_pred cCCCCEEEEE
Confidence 9999987653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=158.83 Aligned_cols=145 Identities=9% Similarity=0.009 Sum_probs=109.1
Q ss_pred EEEEEEcCCCCeEEEEeCC---------CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSN---------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~D---------gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D 2292 (2389)
|.+++|||||++||+++.| ++|++||+.+|++ +.+.. + .+|...|..++|||||++||.++.
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~---~----~~~~~~~~~~~~SPdG~~la~~~~- 133 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDP---P----EVSNAKLQYAGWGPKGQQLIFIFE- 133 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCC---T----TCCSCCCSBCCBCSSTTCEEEEET-
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccC---C----ccccccccccEECCCCCEEEEEEC-
Confidence 5889999999999999875 7888999998876 33321 1 245567999999999999999997
Q ss_pred CcEEEeeCCCCCccCcccceeeeecCC------------------CeeEEEEecCCCCEEEEeecCC-------------
Q 000080 2293 GTVCTWQLEVGGRSNVRPMESCLCFSS------------------HAMDVSYITSSGSVIAAAGHSS------------- 2341 (2389)
Q Consensus 2293 gTVkLWDl~tggrs~~k~l~tl~gHs~------------------~V~sVAFSP~DGslLASAG~sS------------- 2341 (2389)
++|++||+.++. .......+.. .+.+++||| ||+.||+++...
T Consensus 134 ~~i~~~~~~~g~-----~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 134 NNIYYCAHVGKQ-----AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp TEEEEESSSSSC-----CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSS
T ss_pred CeEEEEECCCCc-----eEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCC
Confidence 799999999863 2222222222 237899999 999999874210
Q ss_pred ------------------CCCeEEEeeCCCCCCCceEEEEee------cCcEEEEeecccchhhhc
Q 000080 2342 ------------------NGINVVVWDTLAPPTSSRASITCH------EGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2342 ------------------~D~TVrLWD~l~~tg~~v~sL~GH------~~~V~svA~~~~~~~~~s 2383 (2389)
.+.+|++||+ .++++...+..| ...+.+++++|+|+++++
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~--~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~ 271 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGL--NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT 271 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEES--SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEEC--CCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEE
Confidence 0128999997 455556777765 678999999999998754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.9e-12 Score=134.85 Aligned_cols=146 Identities=10% Similarity=-0.005 Sum_probs=111.7
Q ss_pred EEEEEEcCCCCeEE-EEeCCCcEEEeecCC-CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CCCcEEEe
Q 000080 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTW 2298 (2389)
Q Consensus 2222 VrsVAFsPdG~~LA-SGS~DgTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~DgTVkLW 2298 (2389)
+..++|+|||++|+ +++.|++++||++.. +.....+. .|...+.+++|+|||+.|+.++ .|++++||
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~ 200 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT----------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIW 200 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC----------CSSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc----------cCCCccccceECCCCCEEEEEecCCCCccEE
Confidence 57889999999877 888999999999642 22333331 2447799999999999888776 59999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC--------CCCeEEEeeCCCCCCCc--eEEEEeecCc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS--------NGINVVVWDTLAPPTSS--RASITCHEGL 2368 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS--------~D~TVrLWD~l~~tg~~--v~sL~GH~~~ 2368 (2389)
++...+ .....+..|...+.+++|+| ||++||+++... .++.|.+||+ .+++. +..+.+|...
T Consensus 201 ~~~~~~----~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~--~~~~~~~~~~~~~~~~~ 273 (297)
T 2ojh_A 201 RVRVDG----SSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDM--DGGNVETLFDLFGGQGT 273 (297)
T ss_dssp EEETTS----SCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEET--TSCSCEEEEEEEESTTT
T ss_pred EECCCC----CCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEec--CCCCceeeeccCCCCcc
Confidence 987432 34566777888899999999 999999875211 1257999998 34444 4556689999
Q ss_pred EEEEeecccchhhhcc
Q 000080 2369 YDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2369 V~svA~~~~~~~~~s~ 2384 (2389)
+.+++++|+|++++.-
T Consensus 274 ~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 274 MNSPNWSPDGDEFAYV 289 (297)
T ss_dssp SCSCCBCTTSSEEEEE
T ss_pred cccceECCCCCEEEEE
Confidence 9999999999987654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-12 Score=156.73 Aligned_cols=133 Identities=11% Similarity=-0.023 Sum_probs=109.0
Q ss_pred EEEEEcCCCCeEEEEeCC----CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC--cEE
Q 000080 2223 RAFSSHPLRPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--TVC 2296 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~D----gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg--TVk 2296 (2389)
.+++|+|||++||+++.| ++|++||+.+|+.. ++. +|...+.+++|||||++||+++.|+ +|+
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~----------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD----------SGEGSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC----------CSSCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee----------cCCCccccceECCCCCEEEEccCCCeeEEE
Confidence 678999999999999988 89999999888764 442 3457799999999999999999999 999
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEE--------EecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCc
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVS--------YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGL 2368 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVA--------FSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~ 2368 (2389)
+||++++. .. .+.+|...+.+++ |+| ||.+++++ +.|++++||++ ++.+. .+.+.
T Consensus 222 ~~d~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~---~~~g~~~l~~~----g~~~~---~~~~~ 284 (582)
T 3o4h_A 222 TVDPRDGS-----VE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVA---RREGRSAVFID----GERVE---APQGN 284 (582)
T ss_dssp EECTTTCC-----EE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEE---EETTEEEEEET----TEEEC---CCSSE
T ss_pred EEcCCCCc-----EE-EccCCCcChhhhhhccccceeEcC-CCcEEEEE---EcCCcEEEEEE----CCeec---cCCCc
Confidence 99999862 23 6677888888888 999 88888886 48999999997 44433 45577
Q ss_pred EEEEeecccchhhhcc
Q 000080 2369 YDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2369 V~svA~~~~~~~~~s~ 2384 (2389)
|.+++++ +|+++++.
T Consensus 285 v~~~~~s-dg~~l~~~ 299 (582)
T 3o4h_A 285 HGRVVLW-RGKLVTSH 299 (582)
T ss_dssp EEEEEEE-TTEEEEEE
T ss_pred eEEEEec-CCEEEEEE
Confidence 8899999 88887653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-11 Score=147.07 Aligned_cols=142 Identities=8% Similarity=-0.038 Sum_probs=112.0
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeec--CCCceeeEecccCCCCCCCCCCCCCEEEEEECC----CCCEEEEEe-CCCc
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEF--GKDKATATYGVLPAANVPPPYALASISALQFDH----YGHRFASAA-LDGT 2294 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl--~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP----DG~~LASgS-~DgT 2294 (2389)
++.++|+|||++|++++.|++|++||+ .+++++.++. +...++.|+||| ||+++++++ .|++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-----------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-----------IGIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-----------CCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-----------cCCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 588999999999999999999999999 8898888874 125689999999 999999998 5899
Q ss_pred EEEeeCCCCCccCcccceeeee----------c-CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE--E
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLC----------F-SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA--S 2361 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~g----------H-s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~--s 2361 (2389)
|++||..++ +++.++.. | ...+.+++|+|+++.++++. ..+++|.+||+. +.+.+. .
T Consensus 250 v~v~D~~t~-----~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~---~~~g~i~vvd~~--~~~~l~~~~ 319 (543)
T 1nir_A 250 FAIMDGETL-----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV---KETGKVLLVNYK--DIDNLTVTS 319 (543)
T ss_dssp EEEEETTTC-----CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE---TTTTEEEEEECT--TSSSCEEEE
T ss_pred EEEEecccc-----ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE---CCCCeEEEEEec--CCCcceeEE
Confidence 999999886 34444433 3 23789999999444455553 689999999983 444433 4
Q ss_pred EEeecCcEEEEeecccchhhhccc
Q 000080 2362 ITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2362 L~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+ .|...+..++++|+|++++.-+
T Consensus 320 i-~~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 320 I-GAAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp E-ECCSSCCCEEECTTSCEEEEEE
T ss_pred e-ccCcCccCceECCCCCEEEEEe
Confidence 4 4777888999999999876543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=147.52 Aligned_cols=213 Identities=11% Similarity=0.023 Sum_probs=132.6
Q ss_pred CCCcceeecCCCCCCeEEEEecC-Cc-----EEEEeCCCCcccccccccccceeeeeccCCC------------------
Q 000080 39 RSTSTIDWLPDFAGYSWVAYGAS-SL-----LVISHFPSPLSQEEALIGPIFRQVFALSDNS------------------ 94 (2389)
Q Consensus 39 ~~~~ai~wlpD~~G~~~vAYasg-~~-----vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~------------------ 94 (2389)
.....++|+|| | .++||++. .. -|..| +...+ +. ++.+.++.+.
T Consensus 37 ~~~~~~~~Spd--G-~~la~~~~~d~~~~~~~i~~~--d~~~g-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (741)
T 2ecf_A 37 PTLMKPKVAPD--G-SRVTFLRGKDSDRNQLDLWSY--DIGSG-QT------RLLVDSKVVLPGTETLSDEEKARRERQR 104 (741)
T ss_dssp CCCEEEEECTT--S-SEEEEEECCSSCTTEEEEEEE--ETTTC-CE------EEEECGGGTC------------------
T ss_pred CCCCCceEecC--C-CEEEEEeccCCCCcccEEEEE--ECCCC-ce------eEccchhhcccccccccchhhhhhhhhh
Confidence 35678999999 8 59999986 43 45555 33323 22 2445444331
Q ss_pred ----CCeeEEEEcCCCCCCCcEEEecCCeEEEEeeCCCCCCCCccceeeEEecccceEEEEeecCCCCeEEEEecc-eEE
Q 000080 95 ----LPVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGME-TVL 169 (2389)
Q Consensus 95 ----~dVk~VaWSPd~~~~GeIaASyDntIRVw~~d~~~~kgd~~W~~~~tL~hssTV~sIAWSpdG~rLaSggdD-V~I 169 (2389)
..|..++|||| +..|+.+++++|++|..+... +... .....+...|..++|||||++||+++++ |.+
T Consensus 105 ~~~~~~v~~~~~SpD---g~~l~~~~~~~i~~~d~~~~~-~~~~----~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~ 176 (741)
T 2ecf_A 105 IAAMTGIVDYQWSPD---AQRLLFPLGGELYLYDLKQEG-KAAV----RQLTHGEGFATDAKLSPKGGFVSFIRGRNLWV 176 (741)
T ss_dssp --CCEESCCCEECTT---SSEEEEEETTEEEEEESSSCS-TTSC----CBCCCSSSCEEEEEECTTSSEEEEEETTEEEE
T ss_pred hccccCcceeEECCC---CCEEEEEeCCcEEEEECCCCC-cceE----EEcccCCcccccccCCCCCCEEEEEeCCcEEE
Confidence 13899999998 666776677999999876210 0011 1111356789999999999999998886 999
Q ss_pred eeccCCcEEEEEEeeccccce----------------EEEEeecCCCc-eEeeecccc---------------------c
Q 000080 170 WKKKNTLWEIAWKFKENYPQN----------------LVSATWSIEGP-SATAASMSQ---------------------L 211 (2389)
Q Consensus 170 W~~~~s~Wecvwt~~~~~~~~----------------ivsvaWSpdG~-fATag~dik---------------------f 211 (2389)
|+..++....+. ..+... +.+++|||||. +|+++.+.. |
T Consensus 177 ~d~~~g~~~~~~---~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 177 IDLASGRQMQLT---ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EETTTTEEEECC---CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EecCCCCEEEec---cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 997766554332 122221 24579999999 888876421 2
Q ss_pred ccCCCCCCCceeEEEeeCC-Cccceeecc--cCCCCeeEEEeccCCCCCCCCCCccccCceEEeeec-----CCeEEEEE
Q 000080 212 DLLGPKEAGKCVFICCSDG-KSEYIKLEL--CHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCL-----DGTVRLWC 283 (2389)
Q Consensus 212 ~~~~~~~~~kpV~V~~~dg-~~~~~~ve~--aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSd-----DgTVRLW~ 283 (2389)
...+..+....++++..++ .. ...+.. .|...|..++| | ||+. |+.++. |++|++|+
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-p--------Dg~~-----l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-R--------DPQH-----LSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-E--------ETTE-----EEEEEEETTSSEEEEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-C--------CCCE-----EEEEEecccCCeEEEEEEE
Confidence 2111111223456664333 22 222322 58889999999 9 7777 665543 67888888
Q ss_pred eecCCcc
Q 000080 284 EMDSGKT 290 (2389)
Q Consensus 284 e~d~Gk~ 290 (2389)
.. .|+.
T Consensus 319 ~~-~g~~ 324 (741)
T 2ecf_A 319 LA-SNQQ 324 (741)
T ss_dssp TT-TCCE
T ss_pred CC-CCce
Confidence 43 3443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-12 Score=160.05 Aligned_cols=143 Identities=13% Similarity=0.142 Sum_probs=104.5
Q ss_pred EEEEEEcCCCCeEEEEeC---------CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSS---------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~---------DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D 2292 (2389)
|.+++|||||++||+++. |++|++||+.+|+.+...+ + ...|..++|||||++||.++ |
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l----------~~~~~~~~~SPDG~~la~~~-~ 129 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-L----------PRPIQYLCWSPVGSKLAYVY-Q 129 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-C----------CSSBCCEEECSSTTCEEEEE-T
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-c----------CcccccceECCCCCEEEEEE-C
Confidence 588999999999999887 8999999999887632111 1 14588999999999999996 7
Q ss_pred CcEEEeeCCCCCccCcccceeeeecCCCe-----------------eEEEEecCCCCEEEEeecCC--------------
Q 000080 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHA-----------------MDVSYITSSGSVIAAAGHSS-------------- 2341 (2389)
Q Consensus 2293 gTVkLWDl~tggrs~~k~l~tl~gHs~~V-----------------~sVAFSP~DGslLASAG~sS-------------- 2341 (2389)
++|++||+.++.. .. .+..++...| .+++||| ||+.||+++...
T Consensus 130 ~~i~~~~~~~g~~---~~-l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~ 204 (719)
T 1z68_A 130 NNIYLKQRPGDPP---FQ-ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDE 204 (719)
T ss_dssp TEEEEESSTTSCC---EE-CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred CeEEEEeCCCCCc---EE-EecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCC
Confidence 8999999988631 11 1122333322 4899999 999999874210
Q ss_pred -----------------CCCeEEEeeCCCCCCCce--------EEEEeecCcEEEEeecccchhhhc
Q 000080 2342 -----------------NGINVVVWDTLAPPTSSR--------ASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2342 -----------------~D~TVrLWD~l~~tg~~v--------~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
.+.+|++||+ .+++.+ ..+.+|...+.+++.+|+|+.+++
T Consensus 205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~ 269 (719)
T 1z68_A 205 QYPRTINIPYPKAGAKNPVVRIFIIDT--TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQ 269 (719)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEES--SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEE
T ss_pred CCccceeecCCCCCCCCCeeEEEEEEC--CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEE
Confidence 0118999997 344432 224578889999999999987765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.1e-11 Score=147.89 Aligned_cols=136 Identities=9% Similarity=-0.016 Sum_probs=112.1
Q ss_pred EEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC--CCC
Q 000080 2226 SSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL--EVG 2303 (2389)
Q Consensus 2226 AFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl--~tg 2303 (2389)
+|+|++.++++++.|++|++||..+++++.++.. ||. ++.++|||||++|++++.|++|++||+ +++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~---------g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~ 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT---------GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC---------STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec---------Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC
Confidence 4899999999999999999999999999988851 232 899999999999999999999999999 665
Q ss_pred CccCcccceeeeecCCCeeEEEEec--C-CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe----------ecC-cE
Q 000080 2304 GRSNVRPMESCLCFSSHAMDVSYIT--S-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----------HEG-LY 2369 (2389)
Q Consensus 2304 grs~~k~l~tl~gHs~~V~sVAFSP--~-DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G----------H~~-~V 2369 (2389)
+.+.++. +...++.++|+| + ||++|++++ ..|++|+|||. .+.++++.+.. |.+ .+
T Consensus 213 -----~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~--~~~~~v~v~D~--~t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 213 -----TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGA--YWPPQFAIMDG--ETLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp -----EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEE--EESSEEEEEET--TTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred -----cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEE--ccCCeEEEEec--cccccceeecccCcccCccccccCCce
Confidence 4556665 456789999997 1 688888864 36899999997 57788888865 444 78
Q ss_pred EEEeecccchhhh
Q 000080 2370 DLFLPLKLLNFAL 2382 (2389)
Q Consensus 2370 ~svA~~~~~~~~~ 2382 (2389)
..+++++++++.+
T Consensus 283 ~~i~~s~~~~~~~ 295 (543)
T 1nir_A 283 AAIIASHEHPEFI 295 (543)
T ss_dssp EEEEECSSSSEEE
T ss_pred EEEEECCCCCEEE
Confidence 9999999876543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=131.82 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=104.4
Q ss_pred eEEEEEEcCCCCeEE-EEeCCCcEEEeecCCCce------e------eEecccCCCCCCCCCCCCCEEEEEECCCCCEEE
Q 000080 2221 STRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKA------T------ATYGVLPAANVPPPYALASISALQFDHYGHRFA 2287 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LA-SGS~DgTIRLWDl~tGk~------l------~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA 2287 (2389)
.++.++|+|||++|+ ++..+++|++|++..+.. + .... .+ +...++.++|+|||++++
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~--------~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-VA--------PGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CC--------TTCCEEEEEECTTSSEEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee-cC--------CCCCCeEEEEcCCCCEEE
Confidence 357899999999654 455689999999875432 1 1221 11 125578999999999887
Q ss_pred EEe-CCCcEEEeeCCCCCccCccccee---eeecCCCeeEEEEecCCCCEEEEeecCCC-CCeEEEeeCCCCCCC--ceE
Q 000080 2288 SAA-LDGTVCTWQLEVGGRSNVRPMES---CLCFSSHAMDVSYITSSGSVIAAAGHSSN-GINVVVWDTLAPPTS--SRA 2360 (2389)
Q Consensus 2288 SgS-~DgTVkLWDl~tggrs~~k~l~t---l~gHs~~V~sVAFSP~DGslLASAG~sS~-D~TVrLWD~l~~tg~--~v~ 2360 (2389)
+++ .+++|++||++++. ...+.. ...+.....+++|+| ||++|+.++ .. +++|+|||+...+++ .+.
T Consensus 227 v~~~~~~~v~v~~~~~g~---~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~--~~~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGM---LDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASN--RLKADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp EEETTTCEEEEEEEETTE---EEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEE--CSSSCEEEEEEECTTTCCEEEEE
T ss_pred EEcCCCCeEEEEEecCCc---eEEeEEEecCCCCCCCcccEEECC-CCCEEEEEC--CCCCCEEEEEEEcCCCCcEEEee
Confidence 777 69999999998652 122222 233445578999999 999887653 34 689999998433444 244
Q ss_pred EEEeecCcEEEEeecccchhhhccc
Q 000080 2361 SITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2361 sL~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
.+.. ...+..++++|+|++++.-+
T Consensus 301 ~~~~-g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 301 YQLT-GIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp EEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred EecC-CCCCceEEECCCCCEEEEEE
Confidence 5554 55788999999999876544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-10 Score=127.57 Aligned_cols=144 Identities=6% Similarity=-0.056 Sum_probs=109.9
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCcEEEeeCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQLE 2301 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgTVkLWDl~ 2301 (2389)
..++|+|||++|+.++.|+.|++||..+++.+.++.. + ..++...+..++|+|||+++..++. +++|.+||++
T Consensus 188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL--L----DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC--C----CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc--C----CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 5669999999999999999999999999998877642 1 1245567899999999997766665 5999999999
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhh
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~ 2381 (2389)
++. .+..+.... ...++|+| ||+.|..++ ..|++|.+||+ .+++.+..+..+ ..+.+++++++|+++
T Consensus 262 ~~~-----~~~~~~~~~--~~~~~~s~-dg~~l~v~~--~~~~~v~~~d~--~~~~~~~~~~~~-~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 262 NGN-----ILAKVAAPE--SLAVLFNP-ARNEAYVTH--RQAGKVSVIDA--KSYKVVKTFDTP-THPNSLALSADGKTL 328 (353)
T ss_dssp TCC-----EEEEEECSS--CCCEEEET-TTTEEEEEE--TTTTEEEEEET--TTTEEEEEEECC-SEEEEEEECTTSCEE
T ss_pred CCc-----EEEEEEcCC--CceEEECC-CCCEEEEEE--CCCCeEEEEEC--CCCeEEEEEecC-CCCCeEEEcCCCCEE
Confidence 863 334443322 25699999 888665543 57899999997 456667777654 478999999999966
Q ss_pred hccc
Q 000080 2382 LSKC 2385 (2389)
Q Consensus 2382 ~s~~ 2385 (2389)
+--+
T Consensus 329 ~v~~ 332 (353)
T 3vgz_A 329 YVSV 332 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5433
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.5e-10 Score=127.85 Aligned_cols=155 Identities=7% Similarity=-0.038 Sum_probs=104.6
Q ss_pred EEEEEEcCCCCeEEEEe-CCCcEEEeecC-CCce--eeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 000080 2222 TRAFSSHPLRPFFLVGS-SNTHIYLWEFG-KDKA--TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS-~DgTIRLWDl~-tGk~--l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL 2297 (2389)
+..++|+|||++|++++ .|++|++||+. +|+. +..+. ..+....+..+...+.+++|+|||+.+++...+++|++
T Consensus 88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~ 166 (347)
T 3hfq_A 88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ-HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYV 166 (347)
T ss_dssp CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE-CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee-cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEE
Confidence 36789999999888887 78999999995 3432 33321 11110000012346999999999998888888999999
Q ss_pred eeCCCCCccCcccceeeeecC-CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEEEeec------Cc
Q 000080 2298 WQLEVGGRSNVRPMESCLCFS-SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCHE------GL 2368 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs-~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL~GH~------~~ 2368 (2389)
||+...++ +........+. ..+..++|+| ||++|+.++ ..+++|++||+...+++. ++.+..+. ..
T Consensus 167 ~~~~~~g~--~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 3hfq_A 167 YNVSDAGQ--LSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAG--ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG 241 (347)
T ss_dssp EEECTTSC--EEEEEEEECCTTCCEEEEEECT-TSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred EEECCCCc--EEEeeeEEcCCCCCCceEEECC-CCCEEEEEe--CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence 99984321 12222222222 3678899999 999777654 578999999984323432 34444444 45
Q ss_pred EEEEeecccchhhh
Q 000080 2369 YDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2369 V~svA~~~~~~~~~ 2382 (2389)
+..++++|+|+++.
T Consensus 242 ~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 242 AAAIRLSHDGHFLY 255 (347)
T ss_dssp EEEEEECTTSCEEE
T ss_pred ceeEEECCCCCEEE
Confidence 88999999999763
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-11 Score=153.11 Aligned_cols=137 Identities=9% Similarity=-0.004 Sum_probs=101.5
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCC---CEEEEEECCCCCEEEEEeC---------
Q 000080 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALA---SISALQFDHYGHRFASAAL--------- 2291 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~---~V~sVaFSPDG~~LASgS~--------- 2291 (2389)
+++|+|||++++++ .|++|++||+.+|++...+. + |.. .|.+++|||||++||+++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~---~-------~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILS---N-------RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEEC---H-------HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEc---c-------ccccccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 45999999766654 69999999999998876653 1 212 3899999999999999987
Q ss_pred CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecC---
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEG--- 2367 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~--- 2367 (2389)
|++|++||++++. ......+ ...+.+++||| ||+.||++ .|++|++||+ .++++.+.. .+|..
T Consensus 89 ~~~i~~~d~~~g~---~~~~~~l---~~~~~~~~~SP-DG~~la~~----~~~~i~~~~~--~~g~~~~l~~~~~~~~v~ 155 (719)
T 1z68_A 89 TATYYIYDLSNGE---FVRGNEL---PRPIQYLCWSP-VGSKLAYV----YQNNIYLKQR--PGDPPFQITFNGRENKIF 155 (719)
T ss_dssp EEEEEEEETTTTE---ECCSSCC---CSSBCCEEECS-STTCEEEE----ETTEEEEESS--TTSCCEECCCCCBTTTEE
T ss_pred ceEEEEEECCCCc---cccceec---CcccccceECC-CCCEEEEE----ECCeEEEEeC--CCCCcEEEecCCCcCCeE
Confidence 8999999999862 1000222 25688899999 99999986 4789999997 344443321 33333
Q ss_pred -----cE---------EEEeecccchhhhcc
Q 000080 2368 -----LY---------DLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2368 -----~V---------~svA~~~~~~~~~s~ 2384 (2389)
+| .+++.+|+|+++++-
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~ 186 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYA 186 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEE
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEE
Confidence 32 489999999988753
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=155.33 Aligned_cols=142 Identities=14% Similarity=0.033 Sum_probs=116.7
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEE-EeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIY-LWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIR-LWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
.++.++|+ ||+.|++++.+.+|. +||+.+++.. .+. +|...|.+++|||||++||+++.|++|++||
T Consensus 339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~----------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE----------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC----------CCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec----------CCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 67899999 999999999999999 9999776643 331 3457899999999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecC-------CCCCeEEEeeCCCCCCCceEEEEeecCcEEEE
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS-------SNGINVVVWDTLAPPTSSRASITCHEGLYDLF 2372 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~s-------S~D~TVrLWD~l~~tg~~v~sL~GH~~~V~sv 2372 (2389)
++++. ......+|.+.+.+++|+| ||++||+++.. ..+++|++||+ .+++ +..+..|...+.++
T Consensus 407 ~~tg~-----~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~--~~g~-~~~l~~~~~~~~~~ 477 (1045)
T 1k32_A 407 LETGK-----PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDM--EGRK-IFAATTENSHDYAP 477 (1045)
T ss_dssp TTTCC-----EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEET--TTTE-EEECSCSSSBEEEE
T ss_pred CCCCc-----eEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEEC--CCCc-EEEeeCCCcccCCc
Confidence 99862 3344558999999999999 99999987521 12359999997 3444 78888999999999
Q ss_pred eecccchhhhc
Q 000080 2373 LPLKLLNFALS 2383 (2389)
Q Consensus 2373 A~~~~~~~~~s 2383 (2389)
+++|+|++++.
T Consensus 478 ~~spdG~~l~~ 488 (1045)
T 1k32_A 478 AFDADSKNLYY 488 (1045)
T ss_dssp EECTTSCEEEE
T ss_pred eEcCCCCEEEE
Confidence 99999997654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.8e-10 Score=126.10 Aligned_cols=139 Identities=17% Similarity=0.096 Sum_probs=109.0
Q ss_pred EEEEEEcCCCCeEEEEe--CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLRPFFLVGS--SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS--~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
++.++|+|+|++++.++ .|++|++||..+++.+.++. . +...+..++|+|||+++++++.|+.|.+||
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---~-------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d 212 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---N-------TGKMSTGLALDSEGKRLYTTNADGELITID 212 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC---C-------CCTTCCCCEEETTTTEEEEECTTSEEEEEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec---C-------CCCccceEEECCCCCEEEEEcCCCeEEEEE
Confidence 58899999999776665 58999999999999887763 1 124478899999999999999999999999
Q ss_pred CCCCCccCcccceeee----ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeec
Q 000080 2300 LEVGGRSNVRPMESCL----CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~----gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~ 2375 (2389)
++++. ...... ++...+.+++|+| ||+.|+.++ ..++.|.+||+ .+++.+..+..+. -..++++
T Consensus 213 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~--~~~~~v~~~d~--~~~~~~~~~~~~~--~~~~~~s 280 (353)
T 3vgz_A 213 TADNK-----ILSRKKLLDDGKEHFFINISLDT-ARQRAFITD--SKAAEVLVVDT--RNGNILAKVAAPE--SLAVLFN 280 (353)
T ss_dssp TTTTE-----EEEEEECCCSSSCCCEEEEEEET-TTTEEEEEE--SSSSEEEEEET--TTCCEEEEEECSS--CCCEEEE
T ss_pred CCCCe-----EEEEEEcCCCCCCcccceEEECC-CCCEEEEEe--CCCCEEEEEEC--CCCcEEEEEEcCC--CceEEEC
Confidence 99862 333333 3566788999999 888777654 46799999998 4667777776544 2579999
Q ss_pred ccchhhh
Q 000080 2376 KLLNFAL 2382 (2389)
Q Consensus 2376 ~~~~~~~ 2382 (2389)
|+|++++
T Consensus 281 ~dg~~l~ 287 (353)
T 3vgz_A 281 PARNEAY 287 (353)
T ss_dssp TTTTEEE
T ss_pred CCCCEEE
Confidence 9998654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.5e-10 Score=125.52 Aligned_cols=139 Identities=10% Similarity=0.133 Sum_probs=103.3
Q ss_pred EEEcCCCCeEEEEeCCC---cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCc-EEEee
Q 000080 2225 FSSHPLRPFFLVGSSNT---HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGT-VCTWQ 2299 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~Dg---TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgT-VkLWD 2299 (2389)
++|+|||++|+++..++ +|++||+.+++.+.++. . .....+++|+|||+++ ++...+++ |++|+
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~---~--------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP---I--------PYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE---C--------CTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE---C--------CCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 79999999999665553 99999999999887764 1 1346899999999855 55566688 99999
Q ss_pred CCCCCccCcccc-eeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc---eEEEEeecCcEEEEeec
Q 000080 2300 LEVGGRSNVRPM-ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2300 l~tggrs~~k~l-~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~---v~sL~GH~~~V~svA~~ 2375 (2389)
+...+. .... .....+......++|+| ||++|+.++ ..+++|++||+ .+++. +..+.. ...+..++++
T Consensus 158 ~~~~g~--~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~--~~~~~v~v~d~--~~~~~~~~~~~~~~-~~~~~~~~~s 229 (331)
T 3u4y_A 158 IDADGV--LFDTGQEFISGGTRPFNITFTP-DGNFAFVAN--LIGNSIGILET--QNPENITLLNAVGT-NNLPGTIVVS 229 (331)
T ss_dssp ECTTCC--EEEEEEEEECSSSSEEEEEECT-TSSEEEEEE--TTTTEEEEEEC--SSTTSCEEEEEEEC-SSCCCCEEEC
T ss_pred ECCCCc--EeecCCccccCCCCccceEECC-CCCEEEEEe--CCCCeEEEEEC--CCCcccceeeeccC-CCCCceEEEC
Confidence 986531 1111 12223445688999999 898665553 57899999997 46676 777774 4677899999
Q ss_pred ccchhhh
Q 000080 2376 KLLNFAL 2382 (2389)
Q Consensus 2376 ~~~~~~~ 2382 (2389)
|+|++++
T Consensus 230 pdg~~l~ 236 (331)
T 3u4y_A 230 RDGSTVY 236 (331)
T ss_dssp TTSSEEE
T ss_pred CCCCEEE
Confidence 9999764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.8e-10 Score=128.37 Aligned_cols=152 Identities=9% Similarity=0.065 Sum_probs=105.9
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecC-CCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEE-EeCCCcEEEe
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~-tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LAS-gS~DgTVkLW 2298 (2389)
.+..++|+|||++++++..+++|++||+. +|+...... ...+ . ...++.++|+|||++++. +..+++|++|
T Consensus 142 ~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~-~~~~----~--g~~p~~~~~spdg~~l~v~~~~~~~v~v~ 214 (347)
T 3hfq_A 142 HIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSV-LTME----A--GFGPRHLVFSPDGQYAFLAGELSSQIASL 214 (347)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEE-EECC----T--TCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeee-EEcC----C--CCCCceEEECCCCCEEEEEeCCCCEEEEE
Confidence 35889999999988888889999999998 565432211 0011 1 135789999999995555 5678999999
Q ss_pred eCCCCCccCcccceeeeecC------CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCC--CceEEEEeecCcEE
Q 000080 2299 QLEVGGRSNVRPMESCLCFS------SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEGLYD 2370 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs------~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg--~~v~sL~GH~~~V~ 2370 (2389)
++..... ..........+. ..+.+++|+| ||++|+.++ ..+++|++||+. +.+ +.+..+..|...+.
T Consensus 215 ~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~--~~~~~v~v~~~~-~~g~~~~~~~~~~~~~~~~ 289 (347)
T 3hfq_A 215 KYDTQTG-AFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSN--RGYNTLAVFAVT-ADGHLTLIQQISTEGDFPR 289 (347)
T ss_dssp EEETTTT-EEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEE--ETTTEEEEEEEC-GGGCEEEEEEEECSSSCCC
T ss_pred EecCCCC-ceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEe--CCCCEEEEEEEC-CCCcEEEeEEEecCCCCcC
Confidence 9875210 112223333222 3488899999 999875443 468999999983 222 33566777777899
Q ss_pred EEeecccchhhhcc
Q 000080 2371 LFLPLKLLNFALSK 2384 (2389)
Q Consensus 2371 svA~~~~~~~~~s~ 2384 (2389)
.++++|+|++++.-
T Consensus 290 ~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 290 DFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEECTTSSEEEEE
T ss_pred eEEECCCCCEEEEE
Confidence 99999999987653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.5e-10 Score=125.12 Aligned_cols=145 Identities=8% Similarity=0.074 Sum_probs=100.9
Q ss_pred EEEEEEcCCCCeEEEEe-CCCcEEEeecCCC---ceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CCCcEE
Q 000080 2222 TRAFSSHPLRPFFLVGS-SNTHIYLWEFGKD---KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVC 2296 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS-~DgTIRLWDl~tG---k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~DgTVk 2296 (2389)
+..++|+|+|++|++++ .|++|++||+.+| +.+.++. .+ ..+.+++|+|||+++++++ .|++|+
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~--------~~~~~~~~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---GL--------DGCHSANISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC---CC--------TTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc---CC--------CCceEEEECCCCCEEEEecCCCCEEE
Confidence 36789999999776655 5899999999544 3344432 21 3488999999999888887 899999
Q ss_pred EeeCCCCCccCcccce--eeee-cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEEEe----e--
Q 000080 2297 TWQLEVGGRSNVRPME--SCLC-FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITC----H-- 2365 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~--tl~g-Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL~G----H-- 2365 (2389)
+||+++.++ ..... .... ....+..++|+| +|++|+.++ ..+++|++||+...+++. ++.+.. |
T Consensus 155 ~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~--~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 155 LFTVSDDGH--LVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVN--ELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp EEEECTTSC--EEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEE--TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred EEEecCCCc--eeeecccccccCCCCCcceEEECC-CCCEEEEEe--CCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 999987221 12212 2222 335788999999 899776553 578999999984333333 233331 1
Q ss_pred cCcEEEEeecccchhhh
Q 000080 2366 EGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2366 ~~~V~svA~~~~~~~~~ 2382 (2389)
...+..++++|+|++++
T Consensus 230 ~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLY 246 (343)
T ss_dssp CCCEEEEEECTTSSEEE
T ss_pred cCCccceEECCCCCEEE
Confidence 23566899999998765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.11 E-value=5.5e-11 Score=152.40 Aligned_cols=141 Identities=10% Similarity=-0.011 Sum_probs=104.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC---------
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--------- 2293 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg--------- 2293 (2389)
.+++|+|||++|+++ |++|++||+.+|++...+. +|... .+......++|||||++||.++.|+
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLE---NSTFD--EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEEC---TTTTT--TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEe---chhhh--hhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 567999999999996 9999999999999876663 44211 1112234589999999999999984
Q ss_pred cEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE-EEEeecCcE---
Q 000080 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGLY--- 2369 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~-sL~GH~~~V--- 2369 (2389)
.+.+||++++. ...+..|...+..++||| ||+.||.+ .|++|.+||+ .+++..+ +..++.+.+
T Consensus 93 ~~~~~d~~~~~------~~~l~~~~~~~~~~~~SP-dG~~la~~----~~~~i~~~~~--~~~~~~~lt~~g~~~~~~~g 159 (740)
T 4a5s_A 93 SYDIYDLNKRQ------LITEERIPNNTQWVTWSP-VGHKLAYV----WNNDIYVKIE--PNLPSYRITWTGKEDIIYNG 159 (740)
T ss_dssp EEEEEETTTTE------ECCSSCCCTTEEEEEECS-STTCEEEE----ETTEEEEESS--TTSCCEECCSCCBTTTEEES
T ss_pred EEEEEECCCCc------EEEcccCCCcceeeEECC-CCCEEEEE----ECCeEEEEEC--CCCceEEEcCCCCccceecC
Confidence 45699999862 234567888999999999 99999985 5789999997 3444432 223443322
Q ss_pred --------------EEEeecccchhhhc
Q 000080 2370 --------------DLFLPLKLLNFALS 2383 (2389)
Q Consensus 2370 --------------~svA~~~~~~~~~s 2383 (2389)
..++.||||+++..
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~ 187 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAY 187 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEE
T ss_pred cccccccchhcCCCcceEECCCCCEEEE
Confidence 34899999997764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=125.98 Aligned_cols=141 Identities=7% Similarity=0.038 Sum_probs=100.3
Q ss_pred eEEEEEEcCCCCeEEEEe-CCCcEEEeecCCCce--eeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC--CCcE
Q 000080 2221 STRAFSSHPLRPFFLVGS-SNTHIYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL--DGTV 2295 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS-~DgTIRLWDl~tGk~--l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~--DgTV 2295 (2389)
..+.++|+|||++++.++ .+++|++||+.+|+. +.++... +++......++|||||++|+++.. +++|
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~-------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD-------TVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC-------SSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC-------CCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 458899999999877666 799999999987764 3333211 223456799999999998866555 5999
Q ss_pred EEeeCC--CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecCcEEEE
Q 000080 2296 CTWQLE--VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGLYDLF 2372 (2389)
Q Consensus 2296 kLWDl~--tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~~V~sv 2372 (2389)
++|++. ++ ..+.+..+.. ...+.+++|+| ||++|++++ ..+++|++|++...+++..... ..|...+.||
T Consensus 285 ~v~~~~~~~g---~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~--~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v 357 (361)
T 3scy_A 285 AIFKVDETNG---TLTKVGYQLT-GIHPRNFIITP-NGKYLLVAC--RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCL 357 (361)
T ss_dssp EEEEECTTTC---CEEEEEEEEC-SSCCCEEEECT-TSCEEEEEE--TTTTEEEEEEECTTTCCEEECSCCEECSSEEEE
T ss_pred EEEEEcCCCC---cEEEeeEecC-CCCCceEEECC-CCCEEEEEE--CCCCCEEEEEEECCCCcEeecceeeeCCCCeEE
Confidence 999996 33 1234444443 45788999999 999888874 4789999987643455543322 3466678888
Q ss_pred eec
Q 000080 2373 LPL 2375 (2389)
Q Consensus 2373 A~~ 2375 (2389)
++.
T Consensus 358 ~~~ 360 (361)
T 3scy_A 358 KFV 360 (361)
T ss_dssp EEE
T ss_pred EEc
Confidence 875
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=151.69 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=114.5
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC------
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG------ 2293 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg------ 2293 (2389)
..+..++|+|||++||+++.|++|++||+.+|+....+. +|...|.+++|||||++||+++.++
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~----------~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER----------SREAMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------CSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc----------CCCCCccceEECCCCCeEEEEecCccccccC
Confidence 356899999999999999999999999999998776653 3457789999999999999998765
Q ss_pred ----cEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCC---------------
Q 000080 2294 ----TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP--------------- 2354 (2389)
Q Consensus 2294 ----TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~--------------- 2354 (2389)
+|++||+.++ + ...+..|...+.+++|+| ||+.|+++ +.++..++|+....
T Consensus 449 ~~~~~i~l~d~~~g-----~-~~~l~~~~~~~~~~~~sp-dG~~l~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1045)
T 1k32_A 449 YVMQAIHVYDMEGR-----K-IFAATTENSHDYAPAFDA-DSKNLYYL---SYRSLDPSPDRVVLNFSFEVVSKPFVIPL 518 (1045)
T ss_dssp CCEEEEEEEETTTT-----E-EEECSCSSSBEEEEEECT-TSCEEEEE---ESCCCCCEECSSSSCEECCSCBEEEEEES
T ss_pred CCCCeEEEEECCCC-----c-EEEeeCCCcccCCceEcC-CCCEEEEE---ecccCCcCcchhccccccccCceeEEEEe
Confidence 9999999975 2 566778888999999999 99999986 36666677763100
Q ss_pred ------------------------CC--CceEEEEeecCcEEEEeecccchhhh
Q 000080 2355 ------------------------PT--SSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2355 ------------------------tg--~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
.+ ..+..+..|.+.+..++++|+|...+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~ 572 (1045)
T 1k32_A 519 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 572 (1045)
T ss_dssp STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEE
T ss_pred CCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEE
Confidence 01 12456667888999999999998554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.2e-10 Score=124.73 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=103.2
Q ss_pred EEEEEEcCCCCeEEEEe-CCCcEEEeecCC-Cceee----EecccCCCCCCCCCCCCCEEEEEECCCCCEEEEE-eCCCc
Q 000080 2222 TRAFSSHPLRPFFLVGS-SNTHIYLWEFGK-DKATA----TYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGT 2294 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS-~DgTIRLWDl~t-Gk~l~----Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASg-S~DgT 2294 (2389)
+..++|+|+|++|++++ .|++|++||+.+ ++... .+. .+ ....++.++|+|||++++.+ ..|++
T Consensus 131 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~pdg~~l~~~~~~~~~ 201 (343)
T 1ri6_A 131 CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TV------EGAGPRHMVFHPNEQYAYCVNELNSS 201 (343)
T ss_dssp BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CS------TTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred ceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc---cC------CCCCcceEEECCCCCEEEEEeCCCCE
Confidence 36679999999888777 899999999987 65432 221 11 12468999999999977555 48999
Q ss_pred EEEeeCCCCCccCcccceeee----ec--CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCC--CceEEEEeec
Q 000080 2295 VCTWQLEVGGRSNVRPMESCL----CF--SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHE 2366 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~----gH--s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg--~~v~sL~GH~ 2366 (2389)
|++||++.... ......... +| ...+.+++|+| ||+.|+.++ +.|++|++||+...++ +.+..+..+.
T Consensus 202 i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 277 (343)
T 1ri6_A 202 VDVWELKDPHG-NIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACD--RTASLITVFSVSEDGSVLSKEGFQPTET 277 (343)
T ss_dssp EEEEESSCTTS-CCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEE--TTTTEEEEEEECTTSCCEEEEEEEECSS
T ss_pred EEEEEecCCCC-cEEEEeeccccCccccccCCccceEECC-CCCEEEEEe--cCCCEEEEEEEcCCCCceEEeeeecCCC
Confidence 99999964210 111122222 11 23566899999 888877543 5789999999842222 2345566555
Q ss_pred CcEEEEeecccchhhhccc
Q 000080 2367 GLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2367 ~~V~svA~~~~~~~~~s~~ 2385 (2389)
. +..++++|+|++++.-+
T Consensus 278 ~-~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 278 Q-PRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp S-CCCEEECTTSSEEEEEC
T ss_pred c-cceEEECCCCCEEEEec
Confidence 4 88999999999876544
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-09 Score=123.47 Aligned_cols=136 Identities=7% Similarity=-0.096 Sum_probs=101.2
Q ss_pred EEcCCCCe-EEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCcEEEeeCCCC
Q 000080 2226 SSHPLRPF-FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQLEVG 2303 (2389)
Q Consensus 2226 AFsPdG~~-LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgTVkLWDl~tg 2303 (2389)
.|.+++++ +++++.|++|++||..+|+.+.++.. +...+ .++|+|||+++++++. |++|.+||++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL----------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC----------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc----------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC
Confidence 56776664 88899999999999999998777641 12446 9999999996666655 899999999986
Q ss_pred CccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC-C--eEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2304 GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG-I--NVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2304 grs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D-~--TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
. .....+..+.....+++|+| ||++|+++ ..+ + +|++||+ .+++.++.+..+ ....+++++|+|++
T Consensus 73 ~----~~~~~~~~~~~~~~~~~~s~-dg~~l~~~---~~~~~~~~i~v~d~--~~~~~~~~~~~~-~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 73 P----PKVVAIQEGQSSMADVDITP-DDQFAVTV---TGLNHPFNMQSYSF--LKNKFISTIPIP-YDAVGIAISPNGNG 141 (331)
T ss_dssp S----CEEEEEEECSSCCCCEEECT-TSSEEEEC---CCSSSSCEEEEEET--TTTEEEEEEECC-TTEEEEEECTTSSC
T ss_pred c----eeEEecccCCCCccceEECC-CCCEEEEe---cCCCCcccEEEEEC--CCCCeEEEEECC-CCccceEECCCCCE
Confidence 2 11556666666655599999 99999853 233 3 9999998 456667777644 45689999999997
Q ss_pred hhc
Q 000080 2381 ALS 2383 (2389)
Q Consensus 2381 ~~s 2383 (2389)
++.
T Consensus 142 l~~ 144 (331)
T 3u4y_A 142 LIL 144 (331)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=141.16 Aligned_cols=134 Identities=14% Similarity=0.056 Sum_probs=104.5
Q ss_pred EEEEEcCCCC--eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC----CcEE
Q 000080 2223 RAFSSHPLRP--FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVC 2296 (2389)
Q Consensus 2223 rsVAFsPdG~--~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D----gTVk 2296 (2389)
+..+|+|||+ .+++++.|+++ |||+.+|+..+... + + . .+++|||||++||+++.| ++|+
T Consensus 113 ~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~----~------~-~--~~~~~spDG~~la~~~~~~~~~~~i~ 178 (582)
T 3o4h_A 113 RILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELAR----L------P-G--FGFVSDIRGDLIAGLGFFGGGRVSLF 178 (582)
T ss_dssp EEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEE----E------S-S--CEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred eeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeec----C------C-C--ceEEECCCCCEEEEEEEcCCCCeEEE
Confidence 3457788775 56666666655 99999887655442 1 1 2 889999999999999988 8899
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC--eEEEeeCCCCCCCceEEEEeecCcEEEEe-
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGLYDLFL- 2373 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~--TVrLWD~l~~tg~~v~sL~GH~~~V~svA- 2373 (2389)
+||++++. ...+.+|.+.+.+++||| ||+.||++ ..|+ +|++||+ .+++.. .+.+|...+..++
T Consensus 179 ~~d~~~g~------~~~l~~~~~~~~~~~~Sp-DG~~l~~~---~~~~~~~i~~~d~--~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 179 TSNLSSGG------LRVFDSGEGSFSSASISP-GMKVTAGL---ETAREARLVTVDP--RDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEETTTCC------CEEECCSSCEEEEEEECT-TSCEEEEE---ECSSCEEEEEECT--TTCCEE-ECCCSCSHHHHHCC
T ss_pred EEcCCCCC------ceEeecCCCccccceECC-CCCEEEEc---cCCCeeEEEEEcC--CCCcEE-EccCCCcChhhhhh
Confidence 99999862 346778999999999999 99999964 4677 8999997 455555 7788998888888
Q ss_pred -------ecccchhhhc
Q 000080 2374 -------PLKLLNFALS 2383 (2389)
Q Consensus 2374 -------~~~~~~~~~s 2383 (2389)
++|+|..+.+
T Consensus 246 ~~~~~~~~spdg~~~~~ 262 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVV 262 (582)
T ss_dssp SEEEEEEECTTSCEEEE
T ss_pred ccccceeEcCCCcEEEE
Confidence 9999954443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=142.40 Aligned_cols=141 Identities=10% Similarity=0.005 Sum_probs=102.5
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.+++|||| +.++.+ .|++|++||+.+++...... +...+.+++|||||++||++ .|++|++||+
T Consensus 83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~ 148 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFD-----------TNEETASLDFSPVGDRVAYV-RNHNLYIARG 148 (706)
T ss_dssp CCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEEC-----------CTTCCTTCEECTTSSEEEEE-ETTEEEEEEC
T ss_pred CceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccC-----------CcccccCCcCCCCCCEEEEE-ECCeEEEEec
Confidence 4589999999 655554 45999999998887655432 23558889999999999995 6899999999
Q ss_pred CC-----CCccCcccceeeeecCC--------------CeeEEEEecCCCCEEEEeecC---------------------
Q 000080 2301 EV-----GGRSNVRPMESCLCFSS--------------HAMDVSYITSSGSVIAAAGHS--------------------- 2340 (2389)
Q Consensus 2301 ~t-----ggrs~~k~l~tl~gHs~--------------~V~sVAFSP~DGslLASAG~s--------------------- 2340 (2389)
.+ +. .......+.. .+.+++||| ||+.||+++..
T Consensus 149 ~~~~~~~g~-----~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~ 222 (706)
T 2z3z_A 149 GKLGEGMSR-----AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP 222 (706)
T ss_dssp BCTTSCCCC-----CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred CcccccCCC-----cEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence 87 62 2221122222 247899999 99999987411
Q ss_pred ---------CCCCeEEEeeCCCCCCCceEEE--EeecCcEEEEeecccchhhhc
Q 000080 2341 ---------SNGINVVVWDTLAPPTSSRASI--TCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2341 ---------S~D~TVrLWD~l~~tg~~v~sL--~GH~~~V~svA~~~~~~~~~s 2383 (2389)
..+.+|++||+ .+++..... ..|...+.+++++|+|++++.
T Consensus 223 ~~y~~~g~~~~~~~l~~~d~--~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 274 (706)
T 2z3z_A 223 LYYPMAGTPSHHVTVGIYHL--ATGKTVYLQTGEPKEKFLTNLSWSPDENILYV 274 (706)
T ss_dssp ECCCBTTSCCCEEEEEEEET--TTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred eeCCCCCCCCCeeEEEEEEC--CCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence 14578999998 344433322 257788999999999998765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-10 Score=125.12 Aligned_cols=137 Identities=7% Similarity=-0.019 Sum_probs=101.2
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEeeCCCC
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVG 2303 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLWDl~tg 2303 (2389)
+++++++.++++++.|++|++||..+++.+.++.. + ....+..++|+|||+++ ++++.+++|.+||++++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~------~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~ 75 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM---P------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 75 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC---S------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec---C------CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence 47899999999999999999999999998887741 1 11246899999999865 56668999999999986
Q ss_pred CccCcccceeee-ec-----CCCeeEEEEecCCCCEEEEeecC---------CCCCeEEEeeCCCCCC---CceEEEEee
Q 000080 2304 GRSNVRPMESCL-CF-----SSHAMDVSYITSSGSVIAAAGHS---------SNGINVVVWDTLAPPT---SSRASITCH 2365 (2389)
Q Consensus 2304 grs~~k~l~tl~-gH-----s~~V~sVAFSP~DGslLASAG~s---------S~D~TVrLWD~l~~tg---~~v~sL~GH 2365 (2389)
+....+. ++ ...+.+++|+| ||++|++++.. ..+++|.+||+ .++ +.+..+. +
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~~~~~~~-~ 146 (349)
T 1jmx_B 76 -----KNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFST--ADGLEAKPVRTFP-M 146 (349)
T ss_dssp -----EEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEG--GGGGGBCCSEEEE-C
T ss_pred -----cEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEEC--CCccccceeeecc-C
Confidence 2333333 22 22367899999 99999986410 01489999997 332 2244555 4
Q ss_pred cCcEEEEeecccch
Q 000080 2366 EGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2366 ~~~V~svA~~~~~~ 2379 (2389)
...+.+++++|+|+
T Consensus 147 ~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 147 PRQVYLMRAADDGS 160 (349)
T ss_dssp CSSCCCEEECTTSC
T ss_pred CCcccceeECCCCc
Confidence 45789999999998
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.2e-09 Score=125.52 Aligned_cols=148 Identities=12% Similarity=0.007 Sum_probs=103.9
Q ss_pred EEEcCCCC--eEEEEe-------------CCCcEEEeecC-CCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q 000080 2225 FSSHPLRP--FFLVGS-------------SNTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS 2288 (2389)
Q Consensus 2225 VAFsPdG~--~LASGS-------------~DgTIRLWDl~-tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LAS 2288 (2389)
++|+|||+ ++++++ .|+++++|++. +|+...++..++ + .+...+.+++|||||++|++
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~-~-----~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE-Y-----QENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE-C-----CTTCCEEEEEECTTSSEEEE
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE-e-----CCCCcceEEEECCCCCEEEE
Confidence 58999999 455653 79999999997 576554443111 1 12356999999999998887
Q ss_pred Ee-CCCcEEEeeCC-CCCccCcccceeee--ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCce---EE
Q 000080 2289 AA-LDGTVCTWQLE-VGGRSNVRPMESCL--CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR---AS 2361 (2389)
Q Consensus 2289 gS-~DgTVkLWDl~-tggrs~~k~l~tl~--gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v---~s 2361 (2389)
++ .+++|++||++ ++. ...+..+. .|...++.++|+| ||++|++++ ..+++|++|++...+++.. +.
T Consensus 162 ~~~~~~~v~~~~~~~~g~---~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~ 235 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGE---VELVGSVDAPDPGDHPRWVAMHP-TGNYLYALM--EAGNRICEYVIDPATHMPVYTHHS 235 (365)
T ss_dssp EETTTTEEEEEEECTTSC---EEEEEEEECSSTTCCEEEEEECT-TSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EcCCCCEEEEEEECCCCC---EEEeeeEecCCCCCCCCEeEECC-CCCEEEEEE--CCCCeEEEEEEeCCCCcEEEccce
Confidence 76 47899999998 652 12233333 2466789999999 999988764 4678999998743345432 22
Q ss_pred EE-------eecC------cEEEEe-ecccchhhhcc
Q 000080 2362 IT-------CHEG------LYDLFL-PLKLLNFALSK 2384 (2389)
Q Consensus 2362 L~-------GH~~------~V~svA-~~~~~~~~~s~ 2384 (2389)
+. +|.+ .+..++ ++|+|+++..-
T Consensus 236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred EEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 32 2333 588999 99999987543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=137.90 Aligned_cols=150 Identities=11% Similarity=0.024 Sum_probs=110.5
Q ss_pred eeEEEEEEcCCCCeEEEEeCCC-----cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECC--CCCEEEEEeCC
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNT-----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALD 2292 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~Dg-----TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP--DG~~LASgS~D 2292 (2389)
..+++++|+|||++|++++.|+ +|++||+.+|+...++.. +.+ .+....+.+++|+| ||+++++++.|
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~----~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-ETD----KHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EEC----SSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-ccC----CCeECccCCceeecCCCCEEEEEEccC
Confidence 3568999999999999988876 999999999944444321 111 11112357889999 99999999999
Q ss_pred CcEEEeeCCCCCccCcccceeeeecCCCeeE-EEEecCCCCEEEEeecCCCCC----eEEEeeCCCCCCCceEEEEeecC
Q 000080 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMD-VSYITSSGSVIAAAGHSSNGI----NVVVWDTLAPPTSSRASITCHEG 2367 (2389)
Q Consensus 2293 gTVkLWDl~tggrs~~k~l~tl~gHs~~V~s-VAFSP~DGslLASAG~sS~D~----TVrLWD~l~~tg~~v~sL~GH~~ 2367 (2389)
++++||++...+ .....+..|...+.+ ++|+| ||+.|+.++ +.++ .|..||+ .+++ +..+. |..
T Consensus 333 g~~~l~~~~~~~----~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~--~~~~~~~~~l~~~d~--~~~~-~~~l~-~~~ 401 (706)
T 2z3z_A 333 GWNHLYLYDTTG----RLIRQVTKGEWEVTNFAGFDP-KGTRLYFES--TEASPLERHFYCIDI--KGGK-TKDLT-PES 401 (706)
T ss_dssp SSCEEEEEETTS----CEEEECCCSSSCEEEEEEECT-TSSEEEEEE--SSSCTTCBEEEEEET--TCCC-CEESC-CSS
T ss_pred CccEEEEEECCC----CEEEecCCCCeEEEeeeEEcC-CCCEEEEEe--cCCCCceEEEEEEEc--CCCC-ceecc-CCC
Confidence 999999887322 345667778888887 89999 898887764 3444 5666665 3333 55555 788
Q ss_pred cEEEEeecccchhhhccc
Q 000080 2368 LYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2368 ~V~svA~~~~~~~~~s~~ 2385 (2389)
.+.+++++|+|++++..|
T Consensus 402 ~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 402 GMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp SEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEe
Confidence 899999999999887654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=120.40 Aligned_cols=139 Identities=9% Similarity=-0.003 Sum_probs=102.8
Q ss_pred EEEEEcCCCCeEEEEe------------CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe
Q 000080 2223 RAFSSHPLRPFFLVGS------------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS------------~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS 2290 (2389)
..++|+|||++|++++ .|++|++||+.+++.+..+.. ...+.+++|+|||++|+++
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTTSSCEEEE-
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------CCCcceeEECCCCCEEEEe-
Confidence 5579999999988886 689999999999888777641 1346789999999988888
Q ss_pred CCCcEEEeeCCCCCcc-----C--ccc-----------------------------------------------------
Q 000080 2291 LDGTVCTWQLEVGGRS-----N--VRP----------------------------------------------------- 2310 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs-----~--~k~----------------------------------------------------- 2310 (2389)
++.|++||++++... . ..+
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred -CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 689999999875210 0 000
Q ss_pred -ceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2311 -MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2311 -l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
...+..|...+.+++|+| ||++|+++ |++|++||+ .+++.++.+.. ...+.+++++|+|++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~s~-dg~~l~~~-----~~~v~~~d~--~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNP-AKTRAFGA-----YNVLESFDL--EKNASIKRVPL-PHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp EEEEEEECSSCEEEEEECT-TSSEEEEE-----ESEEEEEET--TTTEEEEEEEC-SSCCCEEEECTTSCEEEE
T ss_pred eEeecCCCCCceeeEEECC-CCCEEEEe-----CCeEEEEEC--CCCcCcceecC-CCceeeEEECCCCCEEEE
Confidence 001122334566799999 99999874 589999997 45666677764 356789999999997654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-10 Score=128.77 Aligned_cols=146 Identities=8% Similarity=-0.020 Sum_probs=102.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecC-CCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCE--EEEEe---------
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYGHR--FASAA--------- 2290 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~-tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~--LASgS--------- 2290 (2389)
..++|+|||++|++++.+ +|++||+. +|+.+..... +. .| .+..++|+|||++ +++++
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-~~-----~g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-PI-----GG---HPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-EC-----CS---SGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-ec-----CC---CCccEEECCCCCEEEEEEecCCcceeccc
Confidence 667999999999999988 99999997 7876544321 11 11 2455899999994 55653
Q ss_pred ----CCCcEEEeeCCCCCccCcccceeee-ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEEE
Q 000080 2291 ----LDGTVCTWQLEVGGRSNVRPMESCL-CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASIT 2363 (2389)
Q Consensus 2291 ----~DgTVkLWDl~tggrs~~k~l~tl~-gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL~ 2363 (2389)
.||++++|++...++ ....+..+. .+...+.+++|+| ||++|+++. ..+++|++||+. ++++. +..+.
T Consensus 113 ~~~~~~g~v~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~--~~~~~v~~~~~~-~~g~~~~~~~~~ 187 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGK-LEKNVQNYEYQENTGIHGMVFDP-TETYLYSAD--LTANKLWTHRKL-ASGEVELVGSVD 187 (365)
T ss_dssp EESSSCCEEEEEEECTTCC-EEEEEEEEECCTTCCEEEEEECT-TSSEEEEEE--TTTTEEEEEEEC-TTSCEEEEEEEE
T ss_pred eeecCCceEEEEccCCCCc-CcceEeeEEeCCCCcceEEEECC-CCCEEEEEc--CCCCEEEEEEEC-CCCCEEEeeeEe
Confidence 799999999974321 111111111 2557899999999 999888763 356799999983 14443 23444
Q ss_pred e--ecCcEEEEeecccchhhhc
Q 000080 2364 C--HEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2364 G--H~~~V~svA~~~~~~~~~s 2383 (2389)
. |..+++.++++|+|+++..
T Consensus 188 ~~~~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 188 APDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp CSSTTCCEEEEEECTTSSEEEE
T ss_pred cCCCCCCCCEeEECCCCCEEEE
Confidence 2 4567999999999998754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=136.99 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=100.4
Q ss_pred EEEEEcCCCCeEEEEeCC---------CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSN---------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~D---------gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg 2293 (2389)
.+++|||||++||.++.| +.+.+||+.+|++.+ +. +|...+..++|||||++||.++ |+
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~----------~~~~~~~~~~~SPdG~~la~~~-~~ 132 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE----------RIPNNTQWVTWSPVGHKLAYVW-NN 132 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS----------CCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cc----------cCCCcceeeEECCCCCEEEEEE-CC
Confidence 457999999999999987 455699999988643 31 2346799999999999999995 68
Q ss_pred cEEEeeCCCCCccCcccceeeeecCCCe-----------------eEEEEecCCCCEEEEeecCCCCC------------
Q 000080 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHA-----------------MDVSYITSSGSVIAAAGHSSNGI------------ 2344 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~tl~gHs~~V-----------------~sVAFSP~DGslLASAG~sS~D~------------ 2344 (2389)
.|++||+.++.. +. .+..++...+ .+++||| ||+.||.+.. ++.
T Consensus 133 ~i~~~~~~~~~~---~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~--d~~~v~~~~~~~~~~ 205 (740)
T 4a5s_A 133 DIYVKIEPNLPS---YR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQF--NDTEVPLIEYSFYSD 205 (740)
T ss_dssp EEEEESSTTSCC---EE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEE--ECTTCCEEEEEECCS
T ss_pred eEEEEECCCCce---EE-EcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEE--cccCCceEEEEeecC
Confidence 999999987631 11 1223333222 3489999 9999998631 111
Q ss_pred -----------------------eEEEeeCCCCC---CC--ceEEEE------eecCcEEEEeecccchhhh
Q 000080 2345 -----------------------NVVVWDTLAPP---TS--SRASIT------CHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2345 -----------------------TVrLWD~l~~t---g~--~v~sL~------GH~~~V~svA~~~~~~~~~ 2382 (2389)
+|+|||+ .+ ++ ....+. +|...+..++.+|+|++++
T Consensus 206 ~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~ 275 (740)
T 4a5s_A 206 ESLQYPKTVRVPYPKAGAVNPTVKFFVVNT--DSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISL 275 (740)
T ss_dssp TTCSSCEEEEEECCBTTSCCCEEEEEEEET--TSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEE
T ss_pred CCCCCCcceeecCCCCcCcCCeeEEEEEEC--CCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEE
Confidence 5788887 34 42 344554 3888899999999999644
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=119.33 Aligned_cols=134 Identities=9% Similarity=0.046 Sum_probs=98.8
Q ss_pred CeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCC-CEEEEEECCCCCEE-EEEeCCCcEEEeeCCCCCccCcc
Q 000080 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALA-SISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVR 2309 (2389)
Q Consensus 2232 ~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~-~V~sVaFSPDG~~L-ASgS~DgTVkLWDl~tggrs~~k 2309 (2389)
++|++++.|++|++||..+++.+.++.. ++.. .+..++|+|||+.+ ++++.+++|.+||+.++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~----- 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI---------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE----- 67 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC---------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc---------CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-----
Confidence 4799999999999999999998877641 1112 37889999999765 666778999999999863
Q ss_pred cceeee-ec----CCCeeEEEEecCCCCEEEEeecCC---------CCCeEEEeeCCCCCCCceEEEEeecCcEEEEeec
Q 000080 2310 PMESCL-CF----SSHAMDVSYITSSGSVIAAAGHSS---------NGINVVVWDTLAPPTSSRASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2310 ~l~tl~-gH----s~~V~sVAFSP~DGslLASAG~sS---------~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~ 2375 (2389)
.+..+. ++ ...+.+++|+| ||+.|++++.+. .|+.|++||+ .+++.++.+.. ...+.+++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~--~~~~~~~~~~~-~~~~~~~~~s 143 (337)
T 1pby_B 68 TLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDA--ETLSRRKAFEA-PRQITMLAWA 143 (337)
T ss_dssp EEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEET--TTTEEEEEEEC-CSSCCCEEEC
T ss_pred eEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEEC--CCCcEEEEEeC-CCCcceeEEC
Confidence 333332 12 22567899999 999888762100 4799999997 45566666664 4568889999
Q ss_pred ccchhhhc
Q 000080 2376 KLLNFALS 2383 (2389)
Q Consensus 2376 ~~~~~~~s 2383 (2389)
|+|++++.
T Consensus 144 ~dg~~l~~ 151 (337)
T 1pby_B 144 RDGSKLYG 151 (337)
T ss_dssp TTSSCEEE
T ss_pred CCCCEEEE
Confidence 99997653
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=133.96 Aligned_cols=146 Identities=13% Similarity=0.024 Sum_probs=100.9
Q ss_pred eeEEEEEEcCCCCeEEEEeCC----------CcEEEeecCC------CceeeEecccCCCCCCCCCCCCCEEEEEECCCC
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSN----------THIYLWEFGK------DKATATYGVLPAANVPPPYALASISALQFDHYG 2283 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~D----------gTIRLWDl~t------Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG 2283 (2389)
..+.+++|+|||+.|++++.| .+|++||+.+ ++. ..+. .. +...+.+++|||||
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~--~~-------~~~~~~~~~~SpDG 199 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELS--DD-------AHRFVTGPRLSPDG 199 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESS--CS-------CSSEECCCEECTTS
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEE--ec-------CCCcccCceECCCC
Confidence 456899999999999999988 6999999987 543 3331 01 23678899999999
Q ss_pred CEEEEEeCCC--------cEEEeeCC-CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC--eEEEeeCC
Q 000080 2284 HRFASAALDG--------TVCTWQLE-VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTL 2352 (2389)
Q Consensus 2284 ~~LASgS~Dg--------TVkLWDl~-tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~--TVrLWD~l 2352 (2389)
++||.++.|+ +|++||++ ++. .........+|...+.+++|+| ||++++++ +.|+ +|.+||+
T Consensus 200 ~~la~~~~~~~~~~~~~~~i~~~d~~~~g~--~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~---~~~~~~~l~~~~~- 272 (662)
T 3azo_A 200 RQAVWLAWDHPRMPWEGTELKTARVTEDGR--FADTRTLLGGPEEAIAQAEWAP-DGSLIVAT---DRTGWWNLHRVDP- 272 (662)
T ss_dssp SEEEEEEECTTCCTTTCEEEEEEEECTTSC--EEEEEEEEEETTBCEEEEEECT-TSCEEEEE---CTTSSCEEEEECT-
T ss_pred CEEEEEECCCCCCCCCCcEEEEEEECCCCc--ccccEEeCCCCCceEcceEECC-CCeEEEEE---CCCCCeEEEEEEC-
Confidence 9999988664 79999998 441 0012222345678899999999 99977765 4667 4555554
Q ss_pred CCCCCceEEEEeecCc--------EEEEeecccchhhhc
Q 000080 2353 APPTSSRASITCHEGL--------YDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2353 ~~tg~~v~sL~GH~~~--------V~svA~~~~~~~~~s 2383 (2389)
.+++..+.+.+|... +.+++++++|+.+.+
T Consensus 273 -~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 273 -ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp -TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred -CCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 344433333333322 457888888876654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.7e-09 Score=119.41 Aligned_cols=139 Identities=6% Similarity=-0.136 Sum_probs=102.6
Q ss_pred EEEcCCCCeEEEEeC-CCc--EEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2225 FSSHPLRPFFLVGSS-NTH--IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~-DgT--IRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
.+|+|||++||.++. |++ |.+||+.+|+..+... +|...+..++|||||++||.++.|++|++||+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~----------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE----------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA 110 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC----------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee----------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECC
Confidence 589999999999988 774 8888998887665431 233445567899999999999999999999999
Q ss_pred CCCccCcccceeeeecCCCeeEEE--EecCCCCEEEEee-------------------cCCCCCeEEEeeCCCCCCCceE
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAG-------------------HSSNGINVVVWDTLAPPTSSRA 2360 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVA--FSP~DGslLASAG-------------------~sS~D~TVrLWD~l~~tg~~v~ 2360 (2389)
++. .......+...+.... ++| ||++|+... ....+..|.+||+ .++ .+.
T Consensus 111 ~g~-----~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~--~~g-~~~ 181 (388)
T 3pe7_A 111 TLE-----ENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL--KTG-EST 181 (388)
T ss_dssp TCC-----EEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET--TTC-CEE
T ss_pred CCc-----ceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC--CCC-ceE
Confidence 873 2223344555554444 477 999998421 0124578999997 344 467
Q ss_pred EEEeecCcEEEEeecc-cchhhh
Q 000080 2361 SITCHEGLYDLFLPLK-LLNFAL 2382 (2389)
Q Consensus 2361 sL~GH~~~V~svA~~~-~~~~~~ 2382 (2389)
.+..|...+..++++| +|++++
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~ 204 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVA 204 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEE
T ss_pred EeecCCccccccEECCCCCCEEE
Confidence 7778889999999999 998765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=9e-09 Score=115.95 Aligned_cols=126 Identities=12% Similarity=0.136 Sum_probs=88.7
Q ss_pred EEEEEEcCCCCe-EEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC--------
Q 000080 2222 TRAFSSHPLRPF-FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-------- 2292 (2389)
Q Consensus 2222 VrsVAFsPdG~~-LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D-------- 2292 (2389)
+..++|+|||++ +++++.+++|++||+.+++.+.++.. ++. +..+...+..++|+|||++|++++.|
T Consensus 45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~--~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 120 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL--SSV--PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 120 (349)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES--CCS--TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc--ccc--cccccccccceEECCCCCEEEEEccccccccccc
Confidence 367899999985 45667899999999999988776641 110 00002347889999999999999976
Q ss_pred ----CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2293 ----GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2293 ----gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
++|.+||++++. ..+.+.... +...+.+++|+| ||++++ ++ . .|++||+ .+++.+..+.
T Consensus 121 ~~~~~~i~~~d~~~~~--~~~~~~~~~-~~~~~~~~~~s~-dg~l~~-~~---~--~i~~~d~--~~~~~~~~~~ 183 (349)
T 1jmx_B 121 VVKPPRLEVFSTADGL--EAKPVRTFP-MPRQVYLMRAAD-DGSLYV-AG---P--DIYKMDV--KTGKYTVALP 183 (349)
T ss_dssp EECCCEEEEEEGGGGG--GBCCSEEEE-CCSSCCCEEECT-TSCEEE-ES---S--SEEEECT--TTCCEEEEEC
T ss_pred ccCCCeEEEEECCCcc--ccceeeecc-CCCcccceeECC-CCcEEE-cc---C--cEEEEeC--CCCceecccc
Confidence 999999998852 113333433 445688999999 889554 32 2 3999997 4555555554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-08 Score=107.63 Aligned_cols=140 Identities=9% Similarity=0.100 Sum_probs=110.1
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
++.|+++|+|+++++.+.++.|++||. +|+.+.++.. .++...++.|+|+|+|+.+++.+.+++|++||.+
T Consensus 123 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~--------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 193 (286)
T 1q7f_A 123 PRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGC--------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 193 (286)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEEC--------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred ceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCC--------CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence 488999999999999889999999996 5777766631 1234678999999999999999999999999985
Q ss_pred CCCccCcccceeeee--cCCCeeEEEEecCCCCEEEEeecCCCCC-eEEEeeCCCCCCCceEEEEeecC--cEEEEeecc
Q 000080 2302 VGGRSNVRPMESCLC--FSSHAMDVSYITSSGSVIAAAGHSSNGI-NVVVWDTLAPPTSSRASITCHEG--LYDLFLPLK 2376 (2389)
Q Consensus 2302 tggrs~~k~l~tl~g--Hs~~V~sVAFSP~DGslLASAG~sS~D~-TVrLWD~l~~tg~~v~sL~GH~~--~V~svA~~~ 2376 (2389)
. +.+.++.. +...+.+++++| +|+++++. ..++ .|++||. .++.+..+..|.. .+..++.++
T Consensus 194 g------~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~---~~~~~~i~~~~~---~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 194 G------QYLRQIGGEGITNYPIGVGINS-NGEILIAD---NHNNFNLTIFTQ---DGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp C------CEEEEESCTTTSCSEEEEEECT-TCCEEEEE---CSSSCEEEEECT---TSCEEEEEEESSCCSCEEEEEEET
T ss_pred C------CEEEEEccCCccCCCcEEEECC-CCCEEEEe---CCCCEEEEEECC---CCCEEEEEcccCCCCcceeEEECC
Confidence 3 23334433 336788999999 89998875 3554 9999995 5777888877654 377999999
Q ss_pred cchhhhc
Q 000080 2377 LLNFALS 2383 (2389)
Q Consensus 2377 ~~~~~~s 2383 (2389)
+|+..++
T Consensus 261 ~g~l~vs 267 (286)
T 1q7f_A 261 DGSVVLA 267 (286)
T ss_dssp TTEEEEE
T ss_pred CCcEEEE
Confidence 9987665
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-07 Score=110.47 Aligned_cols=144 Identities=9% Similarity=0.058 Sum_probs=111.4
Q ss_pred eEEEEEEcCCCCeEEEEeCC------------------------CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSN------------------------THIYLWEFGKDKATATYGVLPAANVPPPYALASISA 2276 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~D------------------------gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~s 2276 (2389)
.+.+|+++|+|+++++++.+ ++|++||..+|+.+..+. .++......
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------~~~~~~p~g 95 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG---------KNLFYLPHG 95 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC---------TTTCSSEEE
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC---------CCccCCceE
Confidence 35899999999999999888 589999998899877663 134567899
Q ss_pred EEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceee---------eecCCCeeEEEEecCCCCEEEEeecCC-CCCeE
Q 000080 2277 LQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC---------LCFSSHAMDVSYITSSGSVIAAAGHSS-NGINV 2346 (2389)
Q Consensus 2277 VaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl---------~gHs~~V~sVAFSP~DGslLASAG~sS-~D~TV 2346 (2389)
|+|+|+|+.+++.+.+++|+.||..... ..+.++ .++-....+|+|+|.+|.++++. + .++.|
T Consensus 96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~----~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d---~~~~~~I 168 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVALHQVFKLDPHSKE----GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD---GYCNSRI 168 (329)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCSS----CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE---CSSCCEE
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCCCe----EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe---CCCCCeE
Confidence 9999999999999999999999986421 234444 34555788999999678988874 3 58899
Q ss_pred EEeeCCCCCCCceEEEEee----------cCcEEEEeeccc-chhhhc
Q 000080 2347 VVWDTLAPPTSSRASITCH----------EGLYDLFLPLKL-LNFALS 2383 (2389)
Q Consensus 2347 rLWD~l~~tg~~v~sL~GH----------~~~V~svA~~~~-~~~~~s 2383 (2389)
++||. .++.+..+... -.....++++++ |+..++
T Consensus 169 ~~~~~---~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~ 213 (329)
T 3fvz_A 169 VQFSP---SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA 213 (329)
T ss_dssp EEECT---TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE
T ss_pred EEEcC---CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE
Confidence 99994 57777777533 334889999998 554443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3e-08 Score=126.57 Aligned_cols=146 Identities=10% Similarity=-0.057 Sum_probs=105.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCC-----cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc-
Q 000080 2221 STRAFSSHPLRPFFLVGSSNT-----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT- 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~Dg-----TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT- 2294 (2389)
.+.+++|||||++||.+++++ +|++||+.+|+.+.... + + ..+.+++|||||+.|+.++.|++
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~--------~-~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--E--------R-VKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--E--------E-ECSCCEEECTTSSEEEEEECCCCS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--c--------C-cccceEEEEeCCCEEEEEEECCcc
Confidence 357889999999999877654 99999999998765321 1 1 22678999999999999999887
Q ss_pred ---------------EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC--CCeEEEeeCCCCC--
Q 000080 2295 ---------------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN--GINVVVWDTLAPP-- 2355 (2389)
Q Consensus 2295 ---------------VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~--D~TVrLWD~l~~t-- 2355 (2389)
|++|++.++. .....+.....|...+.+++|+| ||++|+.++..+. +..|.+||+. +
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~-~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~--~~~ 270 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQ--QES 270 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGG--GSS
T ss_pred ccccccccccCCCCEEEEEECCCCc-ccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECc--ccc
Confidence 9999998862 11112223333566788999999 9999987642121 6789999973 2
Q ss_pred ----CC-ceEEEEeecCcEEEEeecccchhhh
Q 000080 2356 ----TS-SRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2356 ----g~-~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
++ ..+.|..|...+.. ..+++|++++
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~ 301 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYD-YVTNEGTVFT 301 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEE-EEEEETTEEE
T ss_pred cccCCccceEEeeCCCCcEEE-EEeccCCEEE
Confidence 22 47888888877765 3677777654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-08 Score=128.37 Aligned_cols=142 Identities=6% Similarity=-0.113 Sum_probs=99.6
Q ss_pred eEEEEEEcCCCCeEE-----EEeCCCcEEEeecCCCcee-eEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc
Q 000080 2221 STRAFSSHPLRPFFL-----VGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LA-----SGS~DgTIRLWDl~tGk~l-~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT 2294 (2389)
.+.+++|||||++|| +|+++.+|++||+.+|+.+ ..- ++ + .....++|||||+.|+.++.|.+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~-------~--~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV--IE-------G--GKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC--BS-------C--CTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc--cC-------c--ccccceEEecCCCEEEEEEecCC
Confidence 458889999999999 7777889999999998864 211 11 1 11268999999999999999988
Q ss_pred -------------EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC-CCCeEEEeeCCCCCCCceE
Q 000080 2295 -------------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS-NGINVVVWDTLAPPTSSRA 2360 (2389)
Q Consensus 2295 -------------VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS-~D~TVrLWD~l~~tg~~v~ 2360 (2389)
|++|++.++. .....+.....|...+.+++|+| ||++||.++... ....|.+||. + +...+
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~-~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~--~-~~~~~ 265 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEP-SKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRP--G-EKDFR 265 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCG-GGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECT--T-CSSCE
T ss_pred CCCccccCCCCCEEEEEECCCCc-hhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcC--C-CCceE
Confidence 9999999862 11123444455667889999999 999998764111 1125666653 2 33467
Q ss_pred EEEeecCcEEEEeecccch
Q 000080 2361 SITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2361 sL~GH~~~V~svA~~~~~~ 2379 (2389)
.|..|...+..... ++|+
T Consensus 266 ~l~~~~~~~~~~~~-~~g~ 283 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA-WKDR 283 (695)
T ss_dssp EEEECSSCCEEEEE-ETTE
T ss_pred EeecCCCceEEEEe-cCCc
Confidence 77777776666554 4554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=124.83 Aligned_cols=152 Identities=6% Similarity=-0.063 Sum_probs=99.6
Q ss_pred EEEc--CCCCe-EEEEeC-CCcEEEeecC-CC-ceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC------
Q 000080 2225 FSSH--PLRPF-FLVGSS-NTHIYLWEFG-KD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD------ 2292 (2389)
Q Consensus 2225 VAFs--PdG~~-LASGS~-DgTIRLWDl~-tG-k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D------ 2292 (2389)
.+|+ |||+. ||.++. +..|++||.. +| .....+. .. +...|...+.+++|||||++||+++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~---~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 156 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLT---PV--SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGP 156 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECS---CC--CCSTTCEEEEEEEEETTTTEEEEEEEEECSSST
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEecc---CC--ccCCCCccccCcEECCCCCEEEEEEecccCCCC
Confidence 3454 99998 776654 5667777764 02 3334442 11 001145679999999999999999988
Q ss_pred ----CcEEEeeCCCCCccCcccceeee-ecCCCeeEEEEecCCCCEEEEeecCC-----CCCeEEEeeCCCCCC---Cce
Q 000080 2293 ----GTVCTWQLEVGGRSNVRPMESCL-CFSSHAMDVSYITSSGSVIAAAGHSS-----NGINVVVWDTLAPPT---SSR 2359 (2389)
Q Consensus 2293 ----gTVkLWDl~tggrs~~k~l~tl~-gHs~~V~sVAFSP~DGslLASAG~sS-----~D~TVrLWD~l~~tg---~~v 2359 (2389)
.+|++||+.++..........+. .+...+.+++||| ||+.||.++... ...+|++||+. .++ +..
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~-~~g~~~~~~ 234 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVT-EDGRFADTR 234 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEEC-TTSCEEEEE
T ss_pred CCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEEC-CCCcccccE
Confidence 68999999872000000123444 5567788899999 999999764211 11479999972 134 233
Q ss_pred EEEEeecCcEEEEeecccchhhhc
Q 000080 2360 ASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2360 ~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
+...+|...+..++++|+|+.+.+
T Consensus 235 ~l~~~~~~~~~~~~~spdg~l~~~ 258 (662)
T 3azo_A 235 TLLGGPEEAIAQAEWAPDGSLIVA 258 (662)
T ss_dssp EEEEETTBCEEEEEECTTSCEEEE
T ss_pred EeCCCCCceEcceEECCCCeEEEE
Confidence 344556789999999999986554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=108.08 Aligned_cols=134 Identities=8% Similarity=-0.013 Sum_probs=93.0
Q ss_pred EEEEEEcCCCCeEEEEeCCC-----cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC----
Q 000080 2222 TRAFSSHPLRPFFLVGSSNT-----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---- 2292 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~Dg-----TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D---- 2292 (2389)
+..++|+|||++||.++.++ .|.+||+.+|+..+... +.. |..++|||||+.||.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-----------~~~-~~~~~wspdg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-----------AKN-IRSLEWNEDSRKLLIVGFKRRED 128 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-----------ESE-EEEEEECTTSSEEEEEEECCCC-
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-----------CCC-ccceeECCCCCEEEEEEccCCCc
Confidence 47789999999999887653 48888988887655432 113 9999999999999998743
Q ss_pred -----------------------CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC-C--C-e
Q 000080 2293 -----------------------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN-G--I-N 2345 (2389)
Q Consensus 2293 -----------------------gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~-D--~-T 2345 (2389)
..|.+||++++. ....+.. . .+.+++|+| || +++++..... . . .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-----~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~ 199 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-----VIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKF 199 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTE-----EEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCC
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCe-----EEeeecC-C-CcccccCCC-Ce-EEEEEeccccccccccc
Confidence 579999998762 2233444 3 788999999 88 7776532111 0 2 5
Q ss_pred EEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2346 VVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2346 VrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
.+||.+. + ..+..+..| ..+..+ +|+|++++
T Consensus 200 ~~l~~~d--~-~~~~~l~~~-~~~~~~--spdg~~l~ 230 (347)
T 2gop_A 200 WDIYIWE--D-GKEEKMFEK-VSFYAV--DSDGERIL 230 (347)
T ss_dssp EEEEEEE--T-TEEEEEEEE-ESEEEE--EECSSCEE
T ss_pred ccEEEeC--C-CceEEeccC-cceeeE--CCCCCEEE
Confidence 6677653 2 335666666 556554 89998765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=109.37 Aligned_cols=140 Identities=7% Similarity=-0.044 Sum_probs=101.6
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEE--EECCCCCEEEEE------------
Q 000080 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISAL--QFDHYGHRFASA------------ 2289 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sV--aFSPDG~~LASg------------ 2289 (2389)
.++|+|||+.|+.++.|++|++||+.+|+....+.. +...+... .++|||+.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~----------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV----------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC----------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec----------hhhcccccceeECCCCCeeccccccCcccccccc
Confidence 348999999999999999999999999987665531 22445443 459999999853
Q ss_pred ----------eCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC---CCeEEEeeCCCCCC
Q 000080 2290 ----------ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN---GINVVVWDTLAPPT 2356 (2389)
Q Consensus 2290 ----------S~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~---D~TVrLWD~l~~tg 2356 (2389)
+.++.|.+||+.++. ...+..+...+..++|+|.||+.||.+..+.. +..|.+||+ .+
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~---~~ 225 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGE------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE---DG 225 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCC------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET---TS
T ss_pred cchhhhhhccCCcceEEEEECCCCc------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC---CC
Confidence 345789999999862 34455677789999999866788887642111 336777775 34
Q ss_pred CceEEEEeecC--cEEEEeecccchhhh
Q 000080 2357 SSRASITCHEG--LYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2357 ~~v~sL~GH~~--~V~svA~~~~~~~~~ 2382 (2389)
..++.+..+.. .+..++++|+|++++
T Consensus 226 ~~~~~l~~~~~~~~~~~~~~spdg~~l~ 253 (388)
T 3pe7_A 226 TNMRKVKTHAEGESCTHEFWVPDGSALV 253 (388)
T ss_dssp CCCEESCCCCTTEEEEEEEECTTSSCEE
T ss_pred CceEEeeeCCCCcccccceECCCCCEEE
Confidence 45666665653 577899999999764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.8e-07 Score=105.69 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=113.5
Q ss_pred EEEEEEcC-CCCeEEEEe-CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEe
Q 000080 2222 TRAFSSHP-LRPFFLVGS-SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2222 VrsVAFsP-dG~~LASGS-~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLW 2298 (2389)
.+.|+|+| +|.++++.+ .++.|++|| .+|+.+.++........+.+++....+.|+|+|+ |+.+++...+++|++|
T Consensus 145 P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp EEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 37889999 899999997 799999999 5788877764210000112345567899999999 8899999999999999
Q ss_pred eCCCCCccCcccceee--eecCCCeeEEEEecCCCCEEEEeec----CCCCCeEEEeeCCCCCCCceEEE---EeecCcE
Q 000080 2299 QLEVGGRSNVRPMESC--LCFSSHAMDVSYITSSGSVIAAAGH----SSNGINVVVWDTLAPPTSSRASI---TCHEGLY 2369 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl--~gHs~~V~sVAFSP~DGslLASAG~----sS~D~TVrLWD~l~~tg~~v~sL---~GH~~~V 2369 (2389)
|.++|. .+.++ .++...+++++|+| |..+++.|. ++.+.+|++||+ .+++.+..+ .+|-...
T Consensus 224 ~~~~G~-----~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~--~~g~~~~~~~~~~~~~~~p 294 (329)
T 3fvz_A 224 KTDTKE-----FVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNF--SSGEIIDVFKPVRKHFDMP 294 (329)
T ss_dssp ETTTCC-----EEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEET--TTCCEEEEECCSSSCCSSE
T ss_pred ECCCCc-----EEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEc--CCCeEEEEEcCCCCccCCe
Confidence 998762 33343 35667889999998 555555431 134568999997 567778887 4788889
Q ss_pred EEEeecccchhhhc
Q 000080 2370 DLFLPLKLLNFALS 2383 (2389)
Q Consensus 2370 ~svA~~~~~~~~~s 2383 (2389)
..|+++++|+..++
T Consensus 295 ~~ia~~~dG~lyva 308 (329)
T 3fvz_A 295 HDIVASEDGTVYIG 308 (329)
T ss_dssp EEEEECTTSEEEEE
T ss_pred eEEEECCCCCEEEE
Confidence 99999999965554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-07 Score=109.19 Aligned_cols=90 Identities=8% Similarity=-0.036 Sum_probs=73.5
Q ss_pred EEECCCCCEEEEEeC-----------CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCe
Q 000080 2277 LQFDHYGHRFASAAL-----------DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2277 VaFSPDG~~LASgS~-----------DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~T 2345 (2389)
++|+|||+++..+.. +++|.+||++++ +.+.++..+. +++++|+| ||++|++++ . ++
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-----~~v~~i~~~~--p~~ia~sp-dg~~l~v~n---~-~~ 326 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-----QRVARIPGRD--ALSMTIDQ-QRNLMLTLD---G-GN 326 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-----EEEEEEECTT--CCEEEEET-TTTEEEEEC---S-SC
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-----cEEEEEecCC--eeEEEECC-CCCEEEEeC---C-Ce
Confidence 689999887766543 358999999986 4677777776 89999999 999999863 4 89
Q ss_pred EEEeeCCCCCC--CceEEEEeecCcEEEEeecccchh
Q 000080 2346 VVVWDTLAPPT--SSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2346 VrLWD~l~~tg--~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
|.+||+ .++ +.++++..+-..-+.++++|+|++
T Consensus 327 v~v~D~--~t~~l~~~~~i~~~G~~P~~~~~~p~G~~ 361 (361)
T 2oiz_A 327 VNVYDI--SQPEPKLLRTIEGAAEASLQVQFHPVGGT 361 (361)
T ss_dssp EEEEEC--SSSSCEEEEEETTSCSSEEEEEECCCSCC
T ss_pred EEEEEC--CCCcceeeEEeccCCCCcEEEEecCCCCC
Confidence 999997 577 778888777778889999999974
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=6e-07 Score=100.29 Aligned_cols=140 Identities=9% Similarity=0.012 Sum_probs=107.4
Q ss_pred EEEEEE-cCCCCeEEEEeC-CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2222 TRAFSS-HPLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAF-sPdG~~LASGS~-DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
+..+++ .++|.+++++.. ++.|++|| .+|+.+.++.. ++...++.|+|+|+|+.+++.+.++.|++||
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 148 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA---------TILQHPRGVTVDNKGRIIVVECKVMRVIIFD 148 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT---------TTCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC---------ccCCCceEEEEeCCCCEEEEECCCCEEEEEc
Confidence 377899 588888888754 89999999 57888777631 2346789999999999999999999999999
Q ss_pred CCCCCccCcccceeee--ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee--cCcEEEEeec
Q 000080 2300 LEVGGRSNVRPMESCL--CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--EGLYDLFLPL 2375 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~--gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH--~~~V~svA~~ 2375 (2389)
.. + +.+..+. ++...+++++++| +|+++++. +.++.|++||. .++.+..+..+ ......++++
T Consensus 149 ~~-g-----~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~---~~~~~i~~~~~---~g~~~~~~~~~g~~~~p~~i~~d 215 (286)
T 1q7f_A 149 QN-G-----NVLHKFGCSKHLEFPNGVVVND-KQEIFISD---NRAHCVKVFNY---EGQYLRQIGGEGITNYPIGVGIN 215 (286)
T ss_dssp TT-S-----CEEEEEECTTTCSSEEEEEECS-SSEEEEEE---GGGTEEEEEET---TCCEEEEESCTTTSCSEEEEEEC
T ss_pred CC-C-----CEEEEeCCCCccCCcEEEEECC-CCCEEEEE---CCCCEEEEEcC---CCCEEEEEccCCccCCCcEEEEC
Confidence 65 2 1233332 4556789999999 89988874 46889999995 46667777543 4678899999
Q ss_pred ccchhhhcc
Q 000080 2376 KLLNFALSK 2384 (2389)
Q Consensus 2376 ~~~~~~~s~ 2384 (2389)
++|+..++-
T Consensus 216 ~~G~l~v~~ 224 (286)
T 1q7f_A 216 SNGEILIAD 224 (286)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEEe
Confidence 999876654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=99.80 Aligned_cols=145 Identities=11% Similarity=0.031 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC----CcEEE
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCT 2297 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D----gTVkL 2297 (2389)
+.+++|+|+|+++++++.++.|++||..+++...... .+...|.+++|+|||+.++++..+ +.|.+
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~----------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV----------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee----------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 3778999999999999999999999998887654331 123669999999999999988887 79999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecC-CCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS-SNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~s-S~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
||.+++. ...+..-..+...+++++++| +|+++++...+ ..+.+.+||.+. +.+..+..+..+...+..+++++
T Consensus 117 ~d~~~~~---~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 117 ATENGDN---LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVS-PDFRTVTPIIQNISVANGIALST 191 (333)
T ss_dssp ECTTSCS---CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEEC-TTSCCEEEEEEEESSEEEEEECT
T ss_pred EeCCCCE---EEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEe-CCCCEEEEeecCCCcccceEECC
Confidence 9998752 111111113456789999999 89988874200 012244555542 22334555555666788999999
Q ss_pred cchhh
Q 000080 2377 LLNFA 2381 (2389)
Q Consensus 2377 ~~~~~ 2381 (2389)
+|+++
T Consensus 192 dg~~l 196 (333)
T 2dg1_A 192 DEKVL 196 (333)
T ss_dssp TSSEE
T ss_pred CCCEE
Confidence 99743
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.3e-08 Score=111.93 Aligned_cols=141 Identities=9% Similarity=-0.125 Sum_probs=93.9
Q ss_pred EEEEEcCCCCeEEEEeCC---CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2223 RAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~D---gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
..++|+|||++||.++.+ ..|.+||+.+|+..+.. .+ +......++|||||++||.++.+++|.+||
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~----~~------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT----EG------KGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC----CS------SCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee----cC------CCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 445899999998877653 47889999888754322 11 112223378999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeE-------------------EEEecCCCCEEEEee--cCCCCCeEEEeeCCCCCCCc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMD-------------------VSYITSSGSVIAAAG--HSSNGINVVVWDTLAPPTSS 2358 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~s-------------------VAFSP~DGslLASAG--~sS~D~TVrLWD~l~~tg~~ 2358 (2389)
+.++. .......+.....+ ++++| +|+.++.+. ....+..|.+||+ .+++
T Consensus 109 ~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~--~~g~- 179 (396)
T 3c5m_A 109 LETLE-----EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDI--ETGE- 179 (396)
T ss_dssp TTTCC-----EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEET--TTCC-
T ss_pred CCCCC-----cEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEEC--CCCc-
Confidence 98762 22222334443333 34566 666665421 0135678999997 3444
Q ss_pred eEEEEeecCcEEEEeecc-cchhhh
Q 000080 2359 RASITCHEGLYDLFLPLK-LLNFAL 2382 (2389)
Q Consensus 2359 v~sL~GH~~~V~svA~~~-~~~~~~ 2382 (2389)
...+..+...+..++++| +|++++
T Consensus 180 ~~~~~~~~~~~~~~~~sp~dg~~l~ 204 (396)
T 3c5m_A 180 LEVIHQDTAWLGHPIYRPFDDSTVG 204 (396)
T ss_dssp EEEEEEESSCEEEEEEETTEEEEEE
T ss_pred EEeeccCCcccccceECCCCCCEEE
Confidence 455557888999999999 787543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.8e-07 Score=114.53 Aligned_cols=145 Identities=10% Similarity=-0.010 Sum_probs=100.7
Q ss_pred eEEEEEEcCCCCeEEEEeCC-----CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc-
Q 000080 2221 STRAFSSHPLRPFFLVGSSN-----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT- 2294 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~D-----gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT- 2294 (2389)
.+.+++|||||++||.++++ .+|++||+.+|+.+.... +...+..++|||| +.|+.++.|++
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-----------~~~~~~~~~wspD-~~l~~~~~~~~~ 231 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-----------KWVKFSGLAWLGN-DALLYSRFAEPK 231 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-----------EEEESCCCEESTT-SEEEEEECCCC-
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-----------CCceeccEEEECC-CEEEEEEecCcc
Confidence 45788999999999988765 579999999998754311 0112357899999 99999998876
Q ss_pred -------------EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC--CCCeEEEeeCCCCCC--C
Q 000080 2295 -------------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS--NGINVVVWDTLAPPT--S 2357 (2389)
Q Consensus 2295 -------------VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS--~D~TVrLWD~l~~tg--~ 2357 (2389)
|++|++.++. +....+.....|...+.+++||| ||++|+.++... .+..|.+||+. ++ +
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~-~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~--~~~~~ 307 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQ-SADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVT--NGKIG 307 (741)
T ss_dssp -------CCCCCEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEE--TTEEC
T ss_pred cccccccCCCCCEEEEEECCCCc-hhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECC--CCCCc
Confidence 8999998762 11122333333444688999999 999988764222 24589999973 33 3
Q ss_pred ceEEEEeecCcEEEEeecccchhhh
Q 000080 2358 SRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2358 ~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
+...|..+...+.... +++|++++
T Consensus 308 ~~~~l~~~~~~~~~~~-~~dg~~l~ 331 (741)
T 1yr2_A 308 PVTALIPDLKAQWDFV-DGVGDQLW 331 (741)
T ss_dssp CCEEEECSSSSCEEEE-EEETTEEE
T ss_pred ccEEecCCCCceEEEE-eccCCEEE
Confidence 2677777776666553 47777654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-06 Score=100.55 Aligned_cols=133 Identities=7% Similarity=0.008 Sum_probs=93.9
Q ss_pred EEEEEEcCCCCeEEEEe---------CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC
Q 000080 2222 TRAFSSHPLRPFFLVGS---------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS---------~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D 2292 (2389)
+..+++ ||+.+|... .+++|++||+.+|+... + ..+..++|||||++||.++.+
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l--------------~~~~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I--------------ENATMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E--------------ESCEEEEECTTSSEEEEEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c--------------ccCCCeEECCCCCEEEEEEec
Confidence 366677 999887642 37889999998876432 2 237899999999999998865
Q ss_pred ---Cc--EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecC------------------------CCC
Q 000080 2293 ---GT--VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS------------------------SNG 2343 (2389)
Q Consensus 2293 ---gT--VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~s------------------------S~D 2343 (2389)
+. |.+||+.++. . ..+..+.. +.+++|+| ||+.||.++.. ..+
T Consensus 80 ~~~~~~~l~~~~~~~g~-----~-~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (347)
T 2gop_A 80 EEKKVSEIWVADLETLS-----S-KKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK 151 (347)
T ss_dssp TTTTEEEEEEEETTTTE-----E-EEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CE
T ss_pred cCCCcceEEEEECCCCc-----e-EEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence 33 7777887652 2 22233334 89999999 99999986411 013
Q ss_pred CeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2344 INVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
..|.+||+ .+++.++.+.. . .+..++.+|+| .+++.
T Consensus 152 ~~l~~~d~--~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 152 TTFWIFDT--ESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp EEEEEEET--TTTEEEEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred ceEEEEEC--CCCeEEeeecC-C-CcccccCCCCe-EEEEE
Confidence 57999997 34444466766 4 88899999999 66653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.45 E-value=7.5e-07 Score=105.56 Aligned_cols=76 Identities=8% Similarity=0.021 Sum_probs=58.6
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC--
Q 000080 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS----------~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-- 2291 (2389)
.++|||||+++.+++ .|++|.+||..+++.+.++...+.+ ..+......++|||||++|.++..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~----~~~g~~p~~i~~spdg~~l~v~n~~~ 129 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR----VQGLNYDGLFRQTTDGKFIVLQNASP 129 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB----CCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc----cccCCCcceEEECCCCCEEEEECCCC
Confidence 789999999988876 3778999999999988877421111 011245678999999999988863
Q ss_pred CCcEEEeeCCCC
Q 000080 2292 DGTVCTWQLEVG 2303 (2389)
Q Consensus 2292 DgTVkLWDl~tg 2303 (2389)
+++|.+||++++
T Consensus 130 ~~~v~v~d~~~~ 141 (361)
T 2oiz_A 130 ATSIGIVDVAKG 141 (361)
T ss_dssp SEEEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 689999998764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.44 E-value=9.3e-07 Score=99.72 Aligned_cols=146 Identities=9% Similarity=-0.002 Sum_probs=100.1
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC--------
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-------- 2293 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg-------- 2293 (2389)
+.+++++|+|+++++.+.++.|.+||..+|+.........+ .....++.++|+|||+.+++.+.+|
T Consensus 71 ~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~ 144 (296)
T 3e5z_A 71 QNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY 144 (296)
T ss_dssp EEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred cceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC------CCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence 47899999999999888889999999988876443321111 1124578899999999999843221
Q ss_pred -------cEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc---eEEEE
Q 000080 2294 -------TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RASIT 2363 (2389)
Q Consensus 2294 -------TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~---v~sL~ 2363 (2389)
.-+||.+...+ .+..+..+....+.++|+| ||++|++. +.++.|++||+. ++++. ...+.
T Consensus 145 ~~~~~~~~~~l~~~~~~g-----~~~~~~~~~~~~~gi~~s~-dg~~lv~~---~~~~~i~~~~~~-~~g~~~~~~~~~~ 214 (296)
T 3e5z_A 145 GGEMELPGRWVFRLAPDG-----TLSAPIRDRVKPNGLAFLP-SGNLLVSD---TGDNATHRYCLN-ARGETEYQGVHFT 214 (296)
T ss_dssp CCCCCSSSCEEEEECTTS-----CEEEEECCCSSEEEEEECT-TSCEEEEE---TTTTEEEEEEEC-SSSCEEEEEEEEC
T ss_pred cccccCCCcEEEEECCCC-----CEEEeecCCCCCccEEECC-CCCEEEEe---CCCCeEEEEEEC-CCCcCcCCCeEee
Confidence 22555554422 2344456677789999999 99988553 578899999984 23433 23344
Q ss_pred eecCcEEEEeecccchhhhc
Q 000080 2364 CHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2364 GH~~~V~svA~~~~~~~~~s 2383 (2389)
.+.+.+..++.+++|+..++
T Consensus 215 ~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 215 VEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp CSSSCCCSEEEBTTSCEEEE
T ss_pred CCCCCCCeEEECCCCCEEEE
Confidence 45566678889999875443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=97.73 Aligned_cols=142 Identities=11% Similarity=-0.005 Sum_probs=100.8
Q ss_pred EEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2223 RAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2223 rsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
.+++|+|+|+ +++++..++.|+.||..++ ...+.. +...+.+++|+|||+.+++...++.|.+||.+
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~----------~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH----------PSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES----------SCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC----------CCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 6779999999 8889999999999999776 555531 23568999999999999998889999999998
Q ss_pred CCCccCccccee-eee-cCCCeeEEEEecCCCCEEEEeec-CC-----------CCCeEEEeeCCCCCCCceEEEEeecC
Q 000080 2302 VGGRSNVRPMES-CLC-FSSHAMDVSYITSSGSVIAAAGH-SS-----------NGINVVVWDTLAPPTSSRASITCHEG 2367 (2389)
Q Consensus 2302 tggrs~~k~l~t-l~g-Hs~~V~sVAFSP~DGslLASAG~-sS-----------~D~TVrLWD~l~~tg~~v~sL~GH~~ 2367 (2389)
++.. ..+.. ..+ ....+++++++| +|++++|... ++ +.+.-+||.+. +. ..+..+..+..
T Consensus 99 ~g~~---~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~-g~~~~~~~~~~ 172 (296)
T 3e5z_A 99 GGEW---ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA-PD-GTLSAPIRDRV 172 (296)
T ss_dssp TCCE---EEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC-TT-SCEEEEECCCS
T ss_pred CCcE---EEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEEC-CC-CCEEEeecCCC
Confidence 7631 11111 111 123567899999 9999997310 01 00122455542 22 44666777888
Q ss_pred cEEEEeecccchhhh
Q 000080 2368 LYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2368 ~V~svA~~~~~~~~~ 2382 (2389)
....++++|+|+..+
T Consensus 173 ~~~gi~~s~dg~~lv 187 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLV 187 (296)
T ss_dssp SEEEEEECTTSCEEE
T ss_pred CCccEEECCCCCEEE
Confidence 889999999998654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.40 E-value=5.5e-07 Score=102.58 Aligned_cols=139 Identities=9% Similarity=0.019 Sum_probs=103.0
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
|.+++|+|++..+++.+.|++++.| .++...++. + +...+.+++|+|||+.++++..++.|.+||.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~-------~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEIS---K-------KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEE---S-------SCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEe---c-------cCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence 3667899999988888999999999 345555552 2 33668999999999988899999999999998
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC----CeEEEeeCCCCCCCceEEEE--eecCcEEEEeec
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG----INVVVWDTLAPPTSSRASIT--CHEGLYDLFLPL 2375 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D----~TVrLWD~l~~tg~~v~sL~--GH~~~V~svA~~ 2375 (2389)
++. .......+...+.+++++| +|++++++ ..+ +.|.+||. .++.....+. .+...+..++.+
T Consensus 75 ~~~-----~~~~~~~~~~~~~~i~~~~-dg~l~v~~---~~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~i~~d 143 (333)
T 2dg1_A 75 TKE-----IKRPFVSHKANPAAIKIHK-DGRLFVCY---LGDFKSTGGIFAATE--NGDNLQDIIEDLSTAYCIDDMVFD 143 (333)
T ss_dssp TCC-----EEEEEECSSSSEEEEEECT-TSCEEEEE---CTTSSSCCEEEEECT--TSCSCEEEECSSSSCCCEEEEEEC
T ss_pred CCc-----EEEEeeCCCCCcceEEECC-CCcEEEEe---CCCCCCCceEEEEeC--CCCEEEEEEccCccCCcccceEEC
Confidence 762 1111224667899999999 89988874 244 68999996 2333322332 245678999999
Q ss_pred ccchhhhcc
Q 000080 2376 KLLNFALSK 2384 (2389)
Q Consensus 2376 ~~~~~~~s~ 2384 (2389)
++|+..++-
T Consensus 144 ~~g~l~v~~ 152 (333)
T 2dg1_A 144 SKGGFYFTD 152 (333)
T ss_dssp TTSCEEEEE
T ss_pred CCCCEEEEe
Confidence 999876653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=110.86 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=99.8
Q ss_pred eEEEEEEcCCCCeEE-----EEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCE--EEEEECCCCCEEEEEeCCC
Q 000080 2221 STRAFSSHPLRPFFL-----VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASI--SALQFDHYGHRFASAALDG 2293 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LA-----SGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V--~sVaFSPDG~~LASgS~Dg 2293 (2389)
.+.+++|||||++|| +|+++.+|++||+.+|+.+..-. ..+ .+++|+ ||+.|+.++.|.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-------------~~~k~~~~~Ws-Dg~~l~y~~~~~ 195 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-------------KDVKFSGISWL-GNEGFFYSSYDK 195 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-------------EEEESCCCEEE-TTTEEEEEESSC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-------------CCceeccEEEe-CCCEEEEEEecC
Confidence 457889999999998 56667899999999998654311 123 578999 999999999986
Q ss_pred c-------------EEEeeCCCCCccCcccceeeee-cCCCeeEEEEecCCCCEEEEee-cCCCCCeEEEeeCCCCCCCc
Q 000080 2294 T-------------VCTWQLEVGGRSNVRPMESCLC-FSSHAMDVSYITSSGSVIAAAG-HSSNGINVVVWDTLAPPTSS 2358 (2389)
Q Consensus 2294 T-------------VkLWDl~tggrs~~k~l~tl~g-Hs~~V~sVAFSP~DGslLASAG-~sS~D~TVrLWD~l~~tg~~ 2358 (2389)
+ |++|++.++. .....+..... |.....+++|+| ||++|+... .+..++.|.+||+.. ....
T Consensus 196 ~~~~~~~~~~~~~~v~~~~lgt~~-~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~-~~~~ 272 (693)
T 3iuj_A 196 PDGSELSARTDQHKVYFHRLGTAQ-EDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQ-ENAP 272 (693)
T ss_dssp CC-------CCCCEEEEEETTSCG-GGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTS-TTCC
T ss_pred cccccccccCCCcEEEEEECCCCc-ccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCC-CCCc
Confidence 5 9999998863 11123444444 566678899999 999875432 222446899999732 1224
Q ss_pred eEEEEeecCcEEEEeecccchh
Q 000080 2359 RASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2359 v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
...|..+.+..... .+++|++
T Consensus 273 ~~~l~~~~~~~~~~-~~~~g~~ 293 (693)
T 3iuj_A 273 LLTVQGDLDADVSL-VDNKGST 293 (693)
T ss_dssp CEEEECSSSSCEEE-EEEETTE
T ss_pred eEEEeCCCCceEEE-EeccCCE
Confidence 67788887776654 3445543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=105.86 Aligned_cols=131 Identities=8% Similarity=-0.029 Sum_probs=99.7
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
|+.|+| |+.+|+.+ .|+.|++||+.+-....+.. . |...|.++.+.+. .+|+++.||+|.+||+.
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~---~-------~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT---S-------FEKPVFQLKNVNN--TLVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE---E-------CSSCEEEEEECSS--EEEEEETTSEEEEEETT
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc---e-------eecceeeEEecCC--CEEEEECCCCEEEEEcc
Confidence 589999 99999998 88999999997665444432 2 3456888888765 39999999999999999
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEE------E---eecCcEE
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASI------T---CHEGLYD 2370 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL------~---GH~~~V~ 2370 (2389)
.+. . .. +...|.+++||| +| ++.| ..|++|++|+. ..+.+ .+.+ . +|...|.
T Consensus 155 ~~~-----~-~~---~~~~Vs~v~WSp-kG--~~vg---~~dg~i~~~~~--~~~~~~~k~~I~~Pp~~~~~~~~~~~V~ 217 (388)
T 1xip_A 155 TKS-----T-KQ---LAQNVTSFDVTN-SQ--LAVL---LKDRSFQSFAW--RNGEMEKQFEFSLPSELEELPVEEYSPL 217 (388)
T ss_dssp TCC-----E-EE---EEESEEEEEECS-SE--EEEE---ETTSCEEEEEE--ETTEEEEEEEECCCHHHHTSCTTTSEEE
T ss_pred CCc-----c-cc---ccCCceEEEEcC-Cc--eEEE---EcCCcEEEEcC--CCccccccceecCCcccccccCCCeeEE
Confidence 752 1 11 446899999999 88 4443 37899999986 22232 4456 2 4788899
Q ss_pred EEeecccchhhhcc
Q 000080 2371 LFLPLKLLNFALSK 2384 (2389)
Q Consensus 2371 svA~~~~~~~~~s~ 2384 (2389)
+|...+.+.|.++-
T Consensus 218 sI~wl~~~~flv~y 231 (388)
T 1xip_A 218 SVTILSPQDFLAVF 231 (388)
T ss_dssp EEEESSSSEEEEEE
T ss_pred EEEEecCCeEEEEE
Confidence 99999999998863
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-06 Score=98.12 Aligned_cols=110 Identities=10% Similarity=-0.075 Sum_probs=80.0
Q ss_pred eEEEEEEcCCCCeEEEEeCC-----CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEe----
Q 000080 2221 STRAFSSHPLRPFFLVGSSN-----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAA---- 2290 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~D-----gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS---- 2290 (2389)
.+..++|+|||++|+.++.+ ++|++||+.+|+...... . ++ .. ++|+| ||+.+++++
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~-------~~----~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-M-------PP----CS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-C-------CS----EE-EEEECSSSSEEEEEECCC-
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-C-------CC----CC-CCccCCCCceEEEecCCcc
Confidence 46889999999988887765 559999998887544321 1 11 23 89999 999999865
Q ss_pred ------------CCCcEEEeeCCCCCccCcccceeeeecCC-----------CeeEEEEecCCCCEEEEeecCCCCCeEE
Q 000080 2291 ------------LDGTVCTWQLEVGGRSNVRPMESCLCFSS-----------HAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2389)
Q Consensus 2291 ------------~DgTVkLWDl~tggrs~~k~l~tl~gHs~-----------~V~sVAFSP~DGslLASAG~sS~D~TVr 2347 (2389)
.++.|.+||++++. ...+..|.. .+.+++|+| ||+.|+.++ ..++...
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s--~~~~~~~ 376 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKS------AQKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTS--DFEGVPA 376 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTB------CCEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEE--CTTSSCE
T ss_pred eeeccccccccCCCCcEEEEecccCc------eEEccCCCCccccccccccCCCCCceEcc-CCCeEEEEe--cCCCCce
Confidence 35789999998752 234455554 256789999 999998864 4566777
Q ss_pred EeeCC
Q 000080 2348 VWDTL 2352 (2389)
Q Consensus 2348 LWD~l 2352 (2389)
||.+.
T Consensus 377 l~~~~ 381 (396)
T 3c5m_A 377 IYIAD 381 (396)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=6.4e-06 Score=105.32 Aligned_cols=146 Identities=9% Similarity=0.022 Sum_probs=103.2
Q ss_pred EEEEEEcCCCCeEEEEeCCCc----------------EEEeecCCCce--eeEecccCCCCCCCCCCCCCEEEEEECCCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTH----------------IYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHYG 2283 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgT----------------IRLWDl~tGk~--l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG 2283 (2389)
+.+++|+|||+.|+.++.|+. |++|++++++. +..+. . +.|...+..++|||||
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~---~-----~~~~~~~~~~~~SpDg 244 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE---F-----PDEPKWMGGAELSDDG 244 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC---C-----TTCTTCEEEEEECTTS
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec---c-----CCCCeEEEEEEEcCCC
Confidence 356799999999999998877 99999998873 23332 1 1244678999999999
Q ss_pred CEEEEEeC-----CCcEEEeeCCC------CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeec-CCCCCeEEEeeC
Q 000080 2284 HRFASAAL-----DGTVCTWQLEV------GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH-SSNGINVVVWDT 2351 (2389)
Q Consensus 2284 ~~LASgS~-----DgTVkLWDl~t------ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~-sS~D~TVrLWD~ 2351 (2389)
++|+.++. +..|.+||+.+ +. .....+..|...+.. .|+| +|+.|+..+. +..+..|.+||+
T Consensus 245 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~----~~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGI----LKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS----CCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEET
T ss_pred CEEEEEEEccCCCccEEEEEECcccccccCCc----cceEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeC
Confidence 99998875 67899999986 41 135666777776665 4888 7887775431 112447999997
Q ss_pred CCCCCC--ceEEEEeecC--cEEEEeecccchhhhc
Q 000080 2352 LAPPTS--SRASITCHEG--LYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2352 l~~tg~--~v~sL~GH~~--~V~svA~~~~~~~~~s 2383 (2389)
. +++ ..+.+..|.. .+..++.++++..+++
T Consensus 319 ~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 319 T--DPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp T--SCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred C--CCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 3 332 3567777765 5778888866555544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.5e-06 Score=105.16 Aligned_cols=141 Identities=11% Similarity=-0.047 Sum_probs=95.8
Q ss_pred EEEEEcCCCCeEEEEeCCCc-------------EEEeecCCCce--eeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE
Q 000080 2223 RAFSSHPLRPFFLVGSSNTH-------------IYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHYGHRFA 2287 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgT-------------IRLWDl~tGk~--l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA 2287 (2389)
..++|+|||+.|+.++.|.+ |++|++++++. ...+. . ++|...+.+++|||||++|+
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~---~-----~~~~~~~~~~~~SpDG~~l~ 242 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE---R-----TGDPTTFLQSDLSRDGKYLF 242 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC---C-----CCCTTCEEEEEECTTSCCEE
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe---c-----CCCCEEEEEEEECCCCCEEE
Confidence 46799999999999999887 99999998873 23332 1 23446799999999999999
Q ss_pred EEeCCC----cEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEE
Q 000080 2288 SAALDG----TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RAS 2361 (2389)
Q Consensus 2288 SgS~Dg----TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~s 2361 (2389)
.++.++ .|.+||..++ ....+..+...+....+ | +|++++++..+..+++|.+||+. +++. .+.
T Consensus 243 ~~~~~~~~~~~l~~~~~~~~------~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~--~~~~~~~~~ 312 (695)
T 2bkl_A 243 VYILRGWSENDVYWKRPGEK------DFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPA--KPARASWKE 312 (695)
T ss_dssp EEEEETTTEEEEEEECTTCS------SCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTT--BCSGGGCEE
T ss_pred EEEeCCCCceEEEEEcCCCC------ceEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCC--CCCccCCeE
Confidence 988776 6666665443 34556667777777777 5 45555554222246899999973 3332 345
Q ss_pred EEee--cCcEEEEeecccchhhh
Q 000080 2362 ITCH--EGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2362 L~GH--~~~V~svA~~~~~~~~~ 2382 (2389)
+..| ...+..++++ ++..++
T Consensus 313 l~~~~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 313 IVPEDSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp EECCCSSCEEEEEEEE-TTEEEE
T ss_pred EecCCCCCeEEEEEEE-CCEEEE
Confidence 5444 4457777777 444333
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.2e-06 Score=97.27 Aligned_cols=131 Identities=8% Similarity=0.017 Sum_probs=97.1
Q ss_pred CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcc
Q 000080 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2389)
Q Consensus 2230 dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k 2309 (2389)
.+++|++++.|+.|++||..+|+.+.++.. + ....+++++++|||+.|+ +.++.|+.||. +| +
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~---~------~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G-----~ 66 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL---E------KGWECNSVAATKAGEILF--SYSKGAKMITR-DG-----R 66 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC---C------TTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS-----C
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC---C------ccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC-----C
Confidence 368999999999999999999999988851 1 113578999999999999 46889999999 66 3
Q ss_pred cceeeeec-CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE------eecCcEEEEeecccchhhh
Q 000080 2310 PMESCLCF-SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT------CHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2310 ~l~tl~gH-s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~------GH~~~V~svA~~~~~~~~~ 2382 (2389)
.+..+..+ ...+.++++.| ||++|++.+ ..++.|..+| +.++.+..+. ++......+++.++|+..+
T Consensus 67 ~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~--~~~~~v~~vd---~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv 140 (276)
T 3no2_A 67 ELWNIAAPAGCEMQTARILP-DGNALVAWC--GHPSTILEVN---MKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV 140 (276)
T ss_dssp EEEEEECCTTCEEEEEEECT-TSCEEEEEE--STTEEEEEEC---TTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE
T ss_pred EEEEEcCCCCccccccEECC-CCCEEEEec--CCCCEEEEEe---CCCCEEEEEeccCCCCcccccccCceECCCCCEEE
Confidence 45555544 35788999999 999998753 1255666666 4677777664 2333455677888888766
Q ss_pred c
Q 000080 2383 S 2383 (2389)
Q Consensus 2383 s 2383 (2389)
+
T Consensus 141 ~ 141 (276)
T 3no2_A 141 P 141 (276)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.25 E-value=8.4e-06 Score=89.67 Aligned_cols=140 Identities=9% Similarity=0.043 Sum_probs=101.1
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
++.++++|+|+++++.+.++.|..||.++....... ..+...++.|+++|+|+.+++...++.|..||..
T Consensus 110 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~----------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 110 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP----------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC----------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred CcceEECCCCCEEEEECCCCEEEEEECCCceeEeec----------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 488999999999998888999999987655432211 0122457889999999999998889999999988
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecCcEEEEeecccchh
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~~V~svA~~~~~~~ 2380 (2389)
.+. .......+...+.++++.+ +|.++++. ..++.|.+||. .+..+..+ ..+-..+.+++.+++|+.
T Consensus 180 ~~~-----~~~~~~~~~~~p~~i~~d~-~g~l~v~~---~~~~~v~~~~~---~~~~~~~~~~~~~~~p~~i~~~~~g~l 247 (270)
T 1rwi_B 180 SNN-----QVVLPFTDITAPWGIAVDE-AGTVYVTE---HNTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRTV 247 (270)
T ss_dssp TCC-----EEECCCSSCCSEEEEEECT-TCCEEEEE---TTTSCEEEECT---TCSCCEECCCCSCSCEEEEEECTTCCE
T ss_pred CCc-----eEeecccCCCCceEEEECC-CCCEEEEE---CCCCcEEEEcC---CCCcceeeccCCCCCceeEEECCCCCE
Confidence 642 1111222336788999999 88888874 46788999996 23333332 234467899999999985
Q ss_pred hhc
Q 000080 2381 ALS 2383 (2389)
Q Consensus 2381 ~~s 2383 (2389)
.++
T Consensus 248 ~v~ 250 (270)
T 1rwi_B 248 YVA 250 (270)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.9e-06 Score=100.98 Aligned_cols=131 Identities=9% Similarity=0.073 Sum_probs=94.5
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCce-e----eEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-T----ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~-l----~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTV 2295 (2389)
++..+++++.+.++++|+.| .+++|++...+. . ..++ +....+ +.. |++|+| ||+.|+++ .|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~--~~~~~~---lp~-V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLT--FKWEKE---IPD-VIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCC--CSEEEE---CTT-EEEEEE--ETTEEEEE-ESSEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccccccc--ceEEee---CCC-eeEEEE--CCCEEEEE-cCCcE
Confidence 45778999999999999998 477798653330 0 0010 000001 225 999999 99999999 88999
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeec
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~ 2375 (2389)
++||+.+.. ...+...|...+.++.+.+++ +|.+ +.||+|.+||+. .+...+ +..+|+|++-|
T Consensus 109 ~v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p~---~av~---~~dG~L~v~dl~--~~~~~~----~~~~Vs~v~WS 171 (388)
T 1xip_A 109 YSLDLEELS-----EFRTVTSFEKPVFQLKNVNNT---LVIL---NSVNDLSALDLR--TKSTKQ----LAQNVTSFDVT 171 (388)
T ss_dssp EEEESSSTT-----CEEEEEECSSCEEEEEECSSE---EEEE---ETTSEEEEEETT--TCCEEE----EEESEEEEEEC
T ss_pred EEEEchhhh-----ccCccceeecceeeEEecCCC---EEEE---ECCCCEEEEEcc--CCcccc----ccCCceEEEEc
Confidence 999998742 234556788889999888733 6665 489999999983 333332 66789999999
Q ss_pred ccc
Q 000080 2376 KLL 2378 (2389)
Q Consensus 2376 ~~~ 2378 (2389)
|+|
T Consensus 172 pkG 174 (388)
T 1xip_A 172 NSQ 174 (388)
T ss_dssp SSE
T ss_pred CCc
Confidence 999
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=91.53 Aligned_cols=157 Identities=8% Similarity=-0.041 Sum_probs=112.3
Q ss_pred eccccccccccccccCCCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEE
Q 000080 2198 ALGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISAL 2277 (2389)
Q Consensus 2198 g~~~d~~~~~~~~~d~~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sV 2277 (2389)
.+.-++-+.+|.+..+.. ..++++++.|+|++|+ +.++.|+.||. +|+.+..+.. ++...+.++
T Consensus 19 ~~d~~tG~~~w~~~~~~~----~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~---------~~~~~~~~~ 82 (276)
T 3no2_A 19 IINKDTKEIVWEYPLEKG----WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA---------PAGCEMQTA 82 (276)
T ss_dssp EEETTTTEEEEEEECCTT----CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC---------CTTCEEEEE
T ss_pred EEECCCCeEEEEeCCCcc----CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC---------CCCcccccc
Confidence 445556667777632210 1347789999999999 45888999998 8999988851 122468999
Q ss_pred EECCCCCEEEEEeC-CCcEEEeeCCCCCccCcccceeee------ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEee
Q 000080 2278 QFDHYGHRFASAAL-DGTVCTWQLEVGGRSNVRPMESCL------CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2278 aFSPDG~~LASgS~-DgTVkLWDl~tggrs~~k~l~tl~------gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD 2350 (2389)
++.|||+.+++.+. +++|..+|. +| +.+.++. ++....+.+++.+ +|++|++. +.++.|..||
T Consensus 83 ~~~~dG~~lv~~~~~~~~v~~vd~-~G-----k~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~---~~~~~v~~~d 152 (276)
T 3no2_A 83 RILPDGNALVAWCGHPSTILEVNM-KG-----EVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPL---FATSEVREIA 152 (276)
T ss_dssp EECTTSCEEEEEESTTEEEEEECT-TS-----CEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEE---TTTTEEEEEC
T ss_pred EECCCCCEEEEecCCCCEEEEEeC-CC-----CEEEEEeccCCCCcccccccCceECC-CCCEEEEe---cCCCEEEEEC
Confidence 99999999999988 777777775 33 1222221 2223455678888 99999985 5889999999
Q ss_pred CCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2351 TLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2351 ~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
. .++.+.++..+ +...+++..+.|+..+.-
T Consensus 153 ~---~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 153 P---NGQLLNSVKLS-GTPFSSAFLDNGDCLVAC 182 (276)
T ss_dssp T---TSCEEEEEECS-SCCCEEEECTTSCEEEEC
T ss_pred C---CCCEEEEEECC-CCccceeEcCCCCEEEEe
Confidence 6 48888888764 456678888888876643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=90.37 Aligned_cols=142 Identities=6% Similarity=0.028 Sum_probs=101.4
Q ss_pred eEEEEEEcCCCCeEEEEeCC---------------CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEEC----C
Q 000080 2221 STRAFSSHPLRPFFLVGSSN---------------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD----H 2281 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~D---------------gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFS----P 2281 (2389)
.+++++++|+|+++++.+.+ +.|..||.. |+...... +......++|+ |
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----------~~~~~~~i~~~~~~d~ 185 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-----------AFQFPNGIAVRHMNDG 185 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-----------EESSEEEEEEEECTTS
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-----------CCCCcceEEEecccCC
Confidence 35788999999998887765 567777765 65443321 12446889999 9
Q ss_pred CCCEE-EEEeCCCcEEEeeCC-CCCccCcccceeeeecC-CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc
Q 000080 2282 YGHRF-ASAALDGTVCTWQLE-VGGRSNVRPMESCLCFS-SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2389)
Q Consensus 2282 DG~~L-ASgS~DgTVkLWDl~-tggrs~~k~l~tl~gHs-~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~ 2358 (2389)
||+.+ ++...++.|.+||++ ++.....+.+..+.++. .....+++.+ +|++.++. ..++.|.+||. .+++.
T Consensus 186 dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~---~~~~~i~~~d~--~~g~~ 259 (314)
T 1pjx_A 186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVAN---WGSSHIEVFGP--DGGQP 259 (314)
T ss_dssp CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEE---ETTTEEEEECT--TCBSC
T ss_pred CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEE---cCCCEEEEEcC--CCCcE
Confidence 99654 555678999999986 33100001233344444 5678899999 89988874 35789999996 34667
Q ss_pred eEEEEeecCcEEEEeecccchh
Q 000080 2359 RASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2359 v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+..+..+...+.+++++++|++
T Consensus 260 ~~~~~~~~~~~~~i~~~~dg~~ 281 (314)
T 1pjx_A 260 KMRIRCPFEKPSNLHFKPQTKT 281 (314)
T ss_dssp SEEEECSSSCEEEEEECTTSSE
T ss_pred eEEEeCCCCCceeEEECCCCCE
Confidence 7888888889999999999984
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.14 E-value=3e-05 Score=88.67 Aligned_cols=144 Identities=13% Similarity=0.022 Sum_probs=99.8
Q ss_pred eeEEEEEEcCCCCeEEEEeCC---------CcEEEeecCC-CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EE
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSN---------THIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRF-AS 2288 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~D---------gTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-AS 2288 (2389)
..+..++++|+|+++++...+ .+.+||.+.. |+...... +....+.++|+|||+.| ++
T Consensus 98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-----------QVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------EESBEEEEEECTTSCEEEEE
T ss_pred CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-----------ccccccceEEcCCCCEEEEe
Confidence 456889999999988765332 3345665543 44332221 12446899999999865 66
Q ss_pred EeCCCcEEEeeC--CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec
Q 000080 2289 AALDGTVCTWQL--EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2389)
Q Consensus 2289 gS~DgTVkLWDl--~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~ 2366 (2389)
.+.+++|..||+ ++|..++.+.+..+..+.+....+++.+ +|++.++. ..++.|..||. .+++.+..+..+.
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~---~~~~~v~~~d~--~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVAC---YNGGRVIRLDP--VTGKRLQTVKLPV 240 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEE---ETTTEEEEECT--TTCCEEEEEECSS
T ss_pred cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEE---cCCCEEEEEcC--CCceEEEEEECCC
Confidence 677899999997 4442111122333444456778999999 89988764 35678999996 3578889998888
Q ss_pred CcEEEEeec-ccchh
Q 000080 2367 GLYDLFLPL-KLLNF 2380 (2389)
Q Consensus 2367 ~~V~svA~~-~~~~~ 2380 (2389)
..++++++. |+++.
T Consensus 241 ~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSE 255 (297)
T ss_dssp SBEEEEEEESGGGCE
T ss_pred CCceEEEEeCCCCCE
Confidence 899999998 88775
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-05 Score=86.88 Aligned_cols=139 Identities=9% Similarity=-0.012 Sum_probs=97.1
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
++|+++|+|+++++.. ++.|+.||...+. ...+. . +....++.++++|+|+.+++...++.|..||..+
T Consensus 70 ~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-~~~~~---~------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 70 QGLAVDGAGTVYVTDF-NNRVVTLAAGSNN-QTVLP---F------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp CCEEECTTCCEEEEET-TTEEEEECTTCSC-CEECC---C------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred ceeEECCCCCEEEEcC-CCEEEEEeCCCce-Eeeee---c------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCC
Confidence 6789999999888766 8899999985443 33332 1 1235689999999999999988899999998765
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
.. ...........+.++++.| +|+++++. ..++.|.+||.. ..........+......++..++|+..+
T Consensus 139 ~~-----~~~~~~~~~~~p~~i~~~~-~g~l~v~~---~~~~~i~~~~~~--~~~~~~~~~~~~~~p~~i~~d~~g~l~v 207 (270)
T 1rwi_B 139 KT-----QTVLPFTGLNDPDGVAVDN-SGNVYVTD---TDNNRVVKLEAE--SNNQVVLPFTDITAPWGIAVDEAGTVYV 207 (270)
T ss_dssp CS-----CEECCCCSCCSCCCEEECT-TCCEEEEE---GGGTEEEEECTT--TCCEEECCCSSCCSEEEEEECTTCCEEE
T ss_pred ce-----eEeeccccCCCceeEEEeC-CCCEEEEE---CCCCEEEEEecC--CCceEeecccCCCCceEEEECCCCCEEE
Confidence 31 1111122334678899999 89988874 356899999962 2222222233446788999999986554
Q ss_pred c
Q 000080 2383 S 2383 (2389)
Q Consensus 2383 s 2383 (2389)
+
T Consensus 208 ~ 208 (270)
T 1rwi_B 208 T 208 (270)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00015 Score=80.07 Aligned_cols=140 Identities=8% Similarity=0.005 Sum_probs=101.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.+.+++++|+|.++++...++.|..||. +|+... +. .+ .+...+..++++|+|+.+++...++.|..||.
T Consensus 100 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~-~~-------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 100 APYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YE-LP-------NKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EE-CS-------STTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ec-CC-------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 3488999999999998888999999998 666443 21 11 12356899999999999998888899999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE--EeecCcEEEEeecccc
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI--TCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL--~GH~~~V~svA~~~~~ 2378 (2389)
++. ... .....+...+.++++.+ +|++.++. ..++.|.+||. +++ +..+ ..+...+.+++.+++|
T Consensus 170 -~g~---~~~-~~~~~~~~~~~~i~~~~-~g~l~v~~---~~~~~i~~~~~---~g~-~~~~~~~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 170 -SGD---ITE-FKIPTPASGPVGITKGN-DDALWFVE---IIGNKIGRITT---SGE-ITEFKIPTPNARPHAITAGAGI 236 (299)
T ss_dssp -TCC---EEE-EECSSTTCCEEEEEECT-TSSEEEEE---TTTTEEEEECT---TCC-EEEEECSSTTCCEEEEEECSTT
T ss_pred -CCc---EEE-eeCCCCCCcceeEEECC-CCCEEEEc---cCCceEEEECC---CCc-EEEEECCCCCCCceeEEECCCC
Confidence 542 111 12233456688999999 89988764 35788999996 333 3333 3355778899999998
Q ss_pred hhhhc
Q 000080 2379 NFALS 2383 (2389)
Q Consensus 2379 ~~~~s 2383 (2389)
+.-++
T Consensus 237 ~l~v~ 241 (299)
T 2z2n_A 237 DLWFT 241 (299)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 85443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.6e-05 Score=87.88 Aligned_cols=146 Identities=9% Similarity=0.011 Sum_probs=98.0
Q ss_pred EEEEEEcCCCCeEEEEe--CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-----CCc
Q 000080 2222 TRAFSSHPLRPFFLVGS--SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-----DGT 2294 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS--~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-----DgT 2294 (2389)
...|+++|+|+++++.. .++.++||.+.+|+. ..| |.......+|...+..|+|+|+|+.+++-+. ++.
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~---p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPF---PPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EES---CCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecC---CCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 37789999999999964 334488888865653 333 2211112356788999999999988777655 689
Q ss_pred EEEeeCCCCCccCcccceeee------ecCCCeeEEEEecCCCCEEEEeecCC---CCCeEEEeeCCCCCCCceEEEEee
Q 000080 2295 VCTWQLEVGGRSNVRPMESCL------CFSSHAMDVSYITSSGSVIAAAGHSS---NGINVVVWDTLAPPTSSRASITCH 2365 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~------gHs~~V~sVAFSP~DGslLASAG~sS---~D~TVrLWD~l~~tg~~v~sL~GH 2365 (2389)
|..||++++. .+.++. .+....+++++.|++|..+++. + .++.|.+||+ .+++..+.+.+|
T Consensus 95 i~~~d~~tg~-----~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd---~~~~~~~~i~v~d~--~~g~~~r~~~~~ 164 (343)
T 2qe8_A 95 LVAWDTLNNQ-----LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD---PAPDDKAALIRVDL--QTGLAARVLQGY 164 (343)
T ss_dssp EEEEETTTTE-----EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE---CCSGGGCEEEEEET--TTCCEEEECTTC
T ss_pred EEEEECCCCe-----EEEEEECChhhcccccccceEEEecCCCEEEEEc---CccCCCCeEEEEEC--CCCCEEEEecCC
Confidence 9999999862 223222 2334678999998456666653 3 5789999997 344444444443
Q ss_pred c-----------------------------CcEEEEeecccchhh
Q 000080 2366 E-----------------------------GLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2366 ~-----------------------------~~V~svA~~~~~~~~ 2381 (2389)
. ..+..+|.+|+|++.
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL 209 (343)
T ss_dssp TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE
T ss_pred CcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEE
Confidence 1 246789999999754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00014 Score=92.74 Aligned_cols=142 Identities=6% Similarity=-0.028 Sum_probs=101.1
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecC--CCceeeEecccCCCCCCCCCCCCCEEEEEEC----CCCCEEEEEe-CCCc
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFD----HYGHRFASAA-LDGT 2294 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~--tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFS----PDG~~LASgS-~DgT 2294 (2389)
+..++|+|||+++.+++.|++|.+||+. +++.+.++.+ | ..-+.++|| |||+++.++. .+++
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~---------G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~ 267 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI---------G--SEARSIETSKMEGWEDKYAIAGAYWPPQ 267 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC---------C--SEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec---------C--CCCceeEEccccCCCCCEEEEEEccCCe
Confidence 4678999999999999999999999995 7777777641 1 236899999 7998777766 4599
Q ss_pred EEEeeCCCCCccCcccceeee--e--------cC-CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEE
Q 000080 2295 VCTWQLEVGGRSNVRPMESCL--C--------FS-SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RAS 2361 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~--g--------Hs-~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~s 2361 (2389)
|.++|..+. +++.+.. + |. ..+..+.++++....+++. .++++|.++|+. +.+. +..
T Consensus 268 v~ViD~~t~-----~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~---~~~g~v~~vd~~--~~~~~~v~~ 337 (567)
T 1qks_A 268 YVIMDGETL-----EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV---KETGKILLVDYT--DLNNLKTTE 337 (567)
T ss_dssp EEEEETTTC-----CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE---TTTTEEEEEETT--CSSEEEEEE
T ss_pred EEEEECCCC-----cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe---cCCCeEEEEecC--CCccceeee
Confidence 999998875 2333322 1 22 2678899998434445443 578999999983 2222 333
Q ss_pred EEeecCcEEEEeecccchhhhccc
Q 000080 2362 ITCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2362 L~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
+. .......++++++|++++.-|
T Consensus 338 i~-~~~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 338 IS-AERFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp EE-CCSSEEEEEECTTSCEEEEEE
T ss_pred ee-ccccccCceECCCCCEEEEEe
Confidence 32 334456788999999987655
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=9e-05 Score=94.34 Aligned_cols=128 Identities=12% Similarity=0.005 Sum_probs=95.5
Q ss_pred CCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC--CCCcc
Q 000080 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE--VGGRS 2306 (2389)
Q Consensus 2229 PdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~--tggrs 2306 (2389)
|.+.++++.+.|++|.++|..+++.+.++.+ | ..+..++|||||+++.+++.|++|.+||+. ++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---------g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--- 230 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT---------G--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--- 230 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC---------S--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC---------C--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---
Confidence 4556788899999999999999998888741 1 347799999999999999999999999996 54
Q ss_pred CcccceeeeecCCCeeEEEEec---CCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe----------ecC-cEEEE
Q 000080 2307 NVRPMESCLCFSSHAMDVSYIT---SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----------HEG-LYDLF 2372 (2389)
Q Consensus 2307 ~~k~l~tl~gHs~~V~sVAFSP---~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G----------H~~-~V~sv 2372 (2389)
+.+.++.. ....+.++|++ +||++++.+. ..+++|.|+|. .+.+.++.+.- |.. .+..+
T Consensus 231 --~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n--~~~~~v~ViD~--~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 231 --TTVAEIKI-GSEARSIETSKMEGWEDKYAIAGA--YWPPQYVIMDG--ETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp --CEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEE--EETTEEEEEET--TTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred --cEeEEEec-CCCCceeEEccccCCCCCEEEEEE--ccCCeEEEEEC--CCCcEEEEEeccccccccccccCCCceEEE
Confidence 34444443 23467899993 3999988874 47799999996 46666666541 333 45556
Q ss_pred eeccc
Q 000080 2373 LPLKL 2377 (2389)
Q Consensus 2373 A~~~~ 2377 (2389)
..+++
T Consensus 304 ~~s~~ 308 (567)
T 1qks_A 304 LASHY 308 (567)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 65554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00014 Score=84.59 Aligned_cols=144 Identities=10% Similarity=-0.001 Sum_probs=96.1
Q ss_pred eeEEEEEEcCCCCeEEEEeCC----CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEE-EEeCCCc
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGT 2294 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~D----gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LA-SgS~DgT 2294 (2389)
..+..++++|+|+++++...+ .+.+||.+.+|+...... +......++|+|||+.|. +.+.++.
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~-----------~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-----------DISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-----------EESSEEEEEECTTSCEEEEEETTTCE
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeC-----------CCcccCCeEEcCCCCEEEEEECCCCE
Confidence 356899999999987765432 234444443555432221 124468999999998764 4456799
Q ss_pred EEEeeCC--CC-CccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEE
Q 000080 2295 VCTWQLE--VG-GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDL 2371 (2389)
Q Consensus 2295 VkLWDl~--tg-grs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~s 2371 (2389)
|.+||+. +| .....+.+..+..+......+++.+ +|.+.++. ..++.|..||. +++.+..+..+...+++
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~---~~~~~v~~~d~---~g~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNAR---WGEGAVDRYDT---DGNHIARYEVPGKQTTC 275 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEE---ETTTEEEEECT---TCCEEEEEECSCSBEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEE---eCCCEEEEECC---CCCEEEEEECCCCCcEE
Confidence 9999986 44 2111122333333345677899998 88887764 24678999995 56677888888888999
Q ss_pred Eeec-ccchhh
Q 000080 2372 FLPL-KLLNFA 2381 (2389)
Q Consensus 2372 vA~~-~~~~~~ 2381 (2389)
+++. ++++..
T Consensus 276 ~af~g~d~~~L 286 (326)
T 2ghs_A 276 PAFIGPDASRL 286 (326)
T ss_dssp EEEESTTSCEE
T ss_pred EEEecCCCCEE
Confidence 9998 887643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0002 Score=79.19 Aligned_cols=139 Identities=4% Similarity=-0.096 Sum_probs=102.6
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.+..+++.|+|.++++...++.|..||. +|+... +. ++. +...+.+++++|+|+.+++...++.|..||.
T Consensus 142 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~-~~~-------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 142 YPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FK-IPT-------PASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EE-CSS-------TTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-ee-CCC-------CCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 3488999999999998888899999998 776543 21 111 2356899999999999998888999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE--EeecCcEEEEeecccc
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI--TCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL--~GH~~~V~svA~~~~~ 2378 (2389)
++. ........+...+.++++.+ +|++.++. ..++.|..||. ++ .+..+ .++...+.+++. ++|
T Consensus 212 -~g~----~~~~~~~~~~~~~~~i~~~~-~g~l~v~~---~~~~~i~~~d~---~g-~~~~~~~~~~~~~~~~i~~-~~g 277 (299)
T 2z2n_A 212 -SGE----ITEFKIPTPNARPHAITAGA-GIDLWFTE---WGANKIGRLTS---NN-IIEEYPIQIKSAEPHGICF-DGE 277 (299)
T ss_dssp -TCC----EEEEECSSTTCCEEEEEECS-TTCEEEEE---TTTTEEEEEET---TT-EEEEEECSSSSCCEEEEEE-CSS
T ss_pred -CCc----EEEEECCCCCCCceeEEECC-CCCEEEec---cCCceEEEECC---CC-ceEEEeCCCCCCccceEEe-cCC
Confidence 552 11122334557789999999 89988764 35788999996 23 33333 355677899999 888
Q ss_pred hhhhc
Q 000080 2379 NFALS 2383 (2389)
Q Consensus 2379 ~~~~s 2383 (2389)
+.-++
T Consensus 278 ~l~v~ 282 (299)
T 2z2n_A 278 TIWFA 282 (299)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 76554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00019 Score=82.03 Aligned_cols=146 Identities=8% Similarity=-0.025 Sum_probs=94.9
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC--------
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-------- 2292 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D-------- 2292 (2389)
.+.+++++|+|+++++. +..|.+||..+|+...... .+.. .....++.++++|||+.+++...+
T Consensus 55 ~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~-~~~~-----~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~ 126 (297)
T 3g4e_A 55 PVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLAT-VDND-----KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLE 126 (297)
T ss_dssp CEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEE-CCTT-----CSSEEEEEEEECTTSCEEEEEEECCSBTTBCC
T ss_pred ceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEe-cCCC-----CCCCCCCCEEECCCCCEEEecCCccccccccc
Confidence 45889999999976653 5689999998887543322 1111 123568999999999988876443
Q ss_pred -CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc-----eEEEEeec
Q 000080 2293 -GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-----RASITCHE 2366 (2389)
Q Consensus 2293 -gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~-----v~sL~GH~ 2366 (2389)
.+-+||.+...+ ....+..+-...+.++|+| ||+.|..+. +.++.|.+||+...++.. +..+..+.
T Consensus 127 ~~~~~l~~~d~~g-----~~~~~~~~~~~pngi~~sp-dg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~ 198 (297)
T 3g4e_A 127 RHQGALYSLFPDH-----HVKKYFDQVDISNGLDWSL-DHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEE 198 (297)
T ss_dssp TTCEEEEEECTTS-----CEEEEEEEESBEEEEEECT-TSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGG
T ss_pred CCCcEEEEEECCC-----CEEEEeeccccccceEEcC-CCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCC
Confidence 445777776533 1222333445678899999 888665443 567899999973234432 12223344
Q ss_pred CcEEEEeecccchhhh
Q 000080 2367 GLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2367 ~~V~svA~~~~~~~~~ 2382 (2389)
+....++..++|+.-+
T Consensus 199 ~~p~g~~~d~~G~lwv 214 (297)
T 3g4e_A 199 QIPDGMCIDAEGKLWV 214 (297)
T ss_dssp CEEEEEEEBTTSCEEE
T ss_pred CCCCeeEECCCCCEEE
Confidence 5677888888887444
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0001 Score=85.94 Aligned_cols=145 Identities=4% Similarity=-0.088 Sum_probs=99.0
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CCCcEEEeeC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQL 2300 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~DgTVkLWDl 2300 (2389)
.+.|+++|+|+++++...+++|.+||..+++.+.++.+ +.. .++......+++ .+|+.+++.. .+++|.++|+
T Consensus 86 p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~--g~~---~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 86 PRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC--PDM---DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp EEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC--TTC---CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEET
T ss_pred CcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc--CCc---cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEEC
Confidence 38889999997777766899999999999988777642 110 122234566777 4555555554 4899999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC--------CCeEEEeeCCCCCCCceEEEEeec-CcEEE
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN--------GINVVVWDTLAPPTSSRASITCHE-GLYDL 2371 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~--------D~TVrLWD~l~~tg~~v~sL~GH~-~~V~s 2371 (2389)
+++. ...++.. .....+++++| +|++++++. +.. .++|.++|. .+++.+..+.-.. .....
T Consensus 160 ~t~~-----~~~~i~~-g~~p~~i~~~~-dG~l~v~~~-~~~~~~~~~~~~~~v~~id~--~t~~v~~~~~~~~g~~p~~ 229 (328)
T 3dsm_A 160 ETDK-----VVDELTI-GIQPTSLVMDK-YNKMWTITD-GGYEGSPYGYEAPSLYRIDA--ETFTVEKQFKFKLGDWPSE 229 (328)
T ss_dssp TTTE-----EEEEEEC-SSCBCCCEECT-TSEEEEEBC-CBCTTCSSCBCCCEEEEEET--TTTEEEEEEECCTTCCCEE
T ss_pred CCCe-----EEEEEEc-CCCccceEEcC-CCCEEEEEC-CCccCCccccCCceEEEEEC--CCCeEEEEEecCCCCCcee
Confidence 9862 3333332 23456799999 899887742 110 278999997 3555555665322 36889
Q ss_pred Eeecccchhhh
Q 000080 2372 FLPLKLLNFAL 2382 (2389)
Q Consensus 2372 vA~~~~~~~~~ 2382 (2389)
++++|+|+++.
T Consensus 230 la~~~d~~~ly 240 (328)
T 3dsm_A 230 VQLNGTRDTLY 240 (328)
T ss_dssp EEECTTSCEEE
T ss_pred EEEecCCCEEE
Confidence 99999998764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00015 Score=93.46 Aligned_cols=138 Identities=9% Similarity=0.019 Sum_probs=91.6
Q ss_pred EEEEEcCCCCeEEEEeCCCc--------------EEEeecCCCce--eeEecccCCCCCCCCCCCCCEEEEEECCCCCEE
Q 000080 2223 RAFSSHPLRPFFLVGSSNTH--------------IYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHYGHRF 2286 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgT--------------IRLWDl~tGk~--l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L 2286 (2389)
.+++|+|| +.|+.++.|+. |++|++++++. ...+. . ++|...+.++.|||||++|
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~---~-----~~~~~~~~~~~~SpDG~~l 282 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA---T-----PELPKRGHGASVSSDGRWV 282 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC---C-----TTCTTCEEEEEECTTSCEE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec---c-----CCCCeEEEEEEECCCCCEE
Confidence 46799999 99998887765 99999988863 23332 1 1233568999999999999
Q ss_pred EEEeCCC-----cEEEeeCCCCCccCccc-ceeeeecCCCeeEEEEecCCCCEEEEeec-CCCCCeEEEeeCCCCCCCce
Q 000080 2287 ASAALDG-----TVCTWQLEVGGRSNVRP-MESCLCFSSHAMDVSYITSSGSVIAAAGH-SSNGINVVVWDTLAPPTSSR 2359 (2389)
Q Consensus 2287 ASgS~Dg-----TVkLWDl~tggrs~~k~-l~tl~gHs~~V~sVAFSP~DGslLASAG~-sS~D~TVrLWD~l~~tg~~v 2359 (2389)
+..+.++ .|.+||++++. .. ...+..+...+.... +| +|+.|+..+- +..+..|.+||+..+.++..
T Consensus 283 ~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 356 (741)
T 1yr2_A 283 VITSSEGTDPVNTVHVARVTNGK----IGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD 356 (741)
T ss_dssp EEEEECTTCSCCEEEEEEEETTE----ECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEE
T ss_pred EEEEEccCCCcceEEEEECCCCC----CcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccE
Confidence 9988655 89999998651 12 455666666666554 47 7888776531 11245699999731111223
Q ss_pred EEEEeecCcEEEEeec
Q 000080 2360 ASITCHEGLYDLFLPL 2375 (2389)
Q Consensus 2360 ~sL~GH~~~V~svA~~ 2375 (2389)
..+..|...+..++++
T Consensus 357 ~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 357 TVVPESKDNLESVGIA 372 (741)
T ss_dssp EEECCCSSEEEEEEEE
T ss_pred EEecCCCCeEEEEEEE
Confidence 3445555556677776
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00031 Score=78.84 Aligned_cols=114 Identities=9% Similarity=0.158 Sum_probs=83.6
Q ss_pred EEEEEc----CCCCe-EEEEeCCCcEEEeecC-CCcee--eEecccCCCCCCCCCCC-CCEEEEEECCCCCEEEEEeCCC
Q 000080 2223 RAFSSH----PLRPF-FLVGSSNTHIYLWEFG-KDKAT--ATYGVLPAANVPPPYAL-ASISALQFDHYGHRFASAALDG 2293 (2389)
Q Consensus 2223 rsVAFs----PdG~~-LASGS~DgTIRLWDl~-tGk~l--~Tl~vl~gh~~p~~GH~-~~V~sVaFSPDG~~LASgS~Dg 2293 (2389)
..++++ |+|+. +++.+.++.|++||.. +|+.. ..+..++ ++. ..+..++++++|+.+++...++
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-------~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-------GTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-------CCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-------CCCCCCCCceEECCCCCEEEEEcCCC
Confidence 678999 99964 5666678999999986 45421 1222111 233 5578999999999999999999
Q ss_pred cEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
.|..||.+++ +.+..+..+...+.+++|+| +|+.|..++ ..++.|..||+
T Consensus 248 ~i~~~d~~~g-----~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~--~~~~~l~~~~~ 297 (314)
T 1pjx_A 248 HIEVFGPDGG-----QPKMRIRCPFEKPSNLHFKP-QTKTIFVTE--HENNAVWKFEW 297 (314)
T ss_dssp EEEEECTTCB-----SCSEEEECSSSCEEEEEECT-TSSEEEEEE--TTTTEEEEEEC
T ss_pred EEEEEcCCCC-----cEeEEEeCCCCCceeEEECC-CCCEEEEEe--CCCCeEEEEeC
Confidence 9999999865 23445556667899999998 888444332 46678999997
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00044 Score=80.61 Aligned_cols=126 Identities=6% Similarity=-0.028 Sum_probs=90.2
Q ss_pred EEEEEcCCCCeEEEEeCC----------CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC
Q 000080 2223 RAFSSHPLRPFFLVGSSN----------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~D----------gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D 2292 (2389)
..++++|+|++++++..+ ++|.++|..+++.+.++.. +. | ...+.++|+|||++|-.+..
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-~~------g--~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-KL------G--DWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-CT------T--CCCEEEEECTTSCEEEEESS-
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec-CC------C--CCceeEEEecCCCEEEEEcc-
Confidence 456999999988887765 8999999999988777641 11 1 35799999999998888765
Q ss_pred CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecC-CCCCeEEEeeCCCCCCCceEEEEee
Q 000080 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS-SNGINVVVWDTLAPPTSSRASITCH 2365 (2389)
Q Consensus 2293 gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~s-S~D~TVrLWD~l~~tg~~v~sL~GH 2365 (2389)
+|.+||++++. . ........+......++++|++|.+.++...+ ..+++|.+||. .++.++++.--
T Consensus 245 -~v~~~d~~t~~--~-~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~---~g~~~~~i~~G 311 (328)
T 3dsm_A 245 -DIWRMPVEADR--V-PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP---QGKLIDEFYVG 311 (328)
T ss_dssp -SEEEEETTCSS--C-CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT---TCCEEEEEEEE
T ss_pred -EEEEEECCCCc--e-eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC---CCCEEEEEEec
Confidence 99999998863 1 11111111245688999999677777763000 25789999996 37778887643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00024 Score=91.34 Aligned_cols=143 Identities=8% Similarity=0.025 Sum_probs=96.9
Q ss_pred EEEEEcCCCCeEEEEeCCCc-------------EEEeecCCCce--eeEecccCCCCCCCCC-CCCCEEEEEECCCCCEE
Q 000080 2223 RAFSSHPLRPFFLVGSSNTH-------------IYLWEFGKDKA--TATYGVLPAANVPPPY-ALASISALQFDHYGHRF 2286 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgT-------------IRLWDl~tGk~--l~Tl~vl~gh~~p~~G-H~~~V~sVaFSPDG~~L 2286 (2389)
.+++|+ ||+.|+.++.|.. |++|++++++. +..+.. .+ |..++.+++|||||++|
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--------~~~~~~~~~~~~~SpDg~~l 248 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA--------IPAQHHRYVGATVTEDDRFL 248 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC--------SGGGCCSEEEEEECTTSCEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec--------CCCCCeEEEEEEEcCCCCEE
Confidence 467999 9999999998854 99999988764 333321 12 33568899999999988
Q ss_pred EEEeC----CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eE
Q 000080 2287 ASAAL----DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RA 2360 (2389)
Q Consensus 2287 ASgS~----DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~ 2360 (2389)
+..+. ++.|.+||++++. .....+..+....... ++++++.+++++..+.....|.+||+. ++.. .+
T Consensus 249 ~~~~~~~~~~~~i~~~d~~~~~----~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~--~~~~~~~~ 321 (693)
T 3iuj_A 249 LISAANSTSGNRLYVKDLSQEN----APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA--NPGPAHWR 321 (693)
T ss_dssp EEEEESSSSCCEEEEEETTSTT----CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT--SCCGGGCE
T ss_pred EEEEccCCCCcEEEEEECCCCC----CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC--CCCccccE
Confidence 65443 3589999998752 2456667777766665 566344555554211123678889973 3333 46
Q ss_pred EEEeecCcEEEEeecccchhhhc
Q 000080 2361 SITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2361 sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
.|..|...+. +++++|++++.
T Consensus 322 ~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 322 DLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp EEECCCSSCE--EEEEETTEEEE
T ss_pred EEecCCCCEE--EEEEECCEEEE
Confidence 7888887776 77888887653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0013 Score=72.70 Aligned_cols=141 Identities=7% Similarity=-0.019 Sum_probs=100.6
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.+..+++.|+|.++++...++.|..+|.. |+.. .+. ++. ....+..++++|+|+.+++...++.|..+|.
T Consensus 105 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~-~~~-------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 105 GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYD-LPN-------KGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEE-CSS-------TTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ecc-CCC-------CCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 34889999999999988878999999986 6654 232 111 2356899999999998888888899999998
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE-EEEeecCcEEEEeecccch
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~-sL~GH~~~V~svA~~~~~~ 2379 (2389)
++. ........+...+.++++.+ +|++.++. ..++.|.++|. +++... .+..+...+.+++..++|+
T Consensus 175 -~g~----~~~~~~~~~~~~~~~i~~d~-~g~l~v~~---~~~~~i~~~~~---~g~~~~~~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 175 -TGK----LEEYPLPTNAAAPVGITSGN-DGALWFVE---IMGNKIGRITT---TGEISEYDIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp -TCC----EEEEECSSTTCCEEEEEECT-TSSEEEEE---TTTTEEEEECT---TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred -CCc----EEEeeCCCCCCCcceEEECC-CCCEEEEc---cCCCEEEEEcC---CCcEEEEECCCCCCCceEEEECCCCC
Confidence 442 11122233456788999999 89988764 35678999996 333322 2334556788999999987
Q ss_pred hhhc
Q 000080 2380 FALS 2383 (2389)
Q Consensus 2380 ~~~s 2383 (2389)
--++
T Consensus 243 l~v~ 246 (300)
T 2qc5_A 243 IWFT 246 (300)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00072 Score=78.71 Aligned_cols=144 Identities=9% Similarity=-0.004 Sum_probs=90.6
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC----CcEEE
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCT 2297 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D----gTVkL 2297 (2389)
+.+++++|+|+++++. .+ .|.+||..+|+...... .+.. .....++.++++|||+.+++...+ ++..|
T Consensus 92 v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~-~~~~-----~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 92 GSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE-LESD-----LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp EEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC-SSTT-----CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred ceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee-CCCC-----CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 5888999999988864 44 49999998887543221 1110 112568999999999988766532 34556
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCC-Cc--eEEE---EeecCcEEE
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SS--RASI---TCHEGLYDL 2371 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg-~~--v~sL---~GH~~~V~s 2371 (2389)
|.+.++ + +..+..+....+.++|+| ||+.|..+. +.++.|.+||+...++ +. .+.+ ..+.+....
T Consensus 164 ~~~~~g-~-----~~~~~~~~~~~~~i~~s~-dg~~lyv~~--~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g 234 (326)
T 2ghs_A 164 YHVAKG-K-----VTKLFADISIPNSICFSP-DGTTGYFVD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG 234 (326)
T ss_dssp EEEETT-E-----EEEEEEEESSEEEEEECT-TSCEEEEEE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred EEEeCC-c-----EEEeeCCCcccCCeEEcC-CCCEEEEEE--CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCe
Confidence 655433 1 222223334678899999 888765543 4678999999731233 21 1222 223455677
Q ss_pred Eeecccchhhh
Q 000080 2372 FLPLKLLNFAL 2382 (2389)
Q Consensus 2372 vA~~~~~~~~~ 2382 (2389)
++..++|+.-+
T Consensus 235 i~~d~~G~lwv 245 (326)
T 2ghs_A 235 SVCDAEGHIWN 245 (326)
T ss_dssp EEECTTSCEEE
T ss_pred eEECCCCCEEE
Confidence 88888887544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0013 Score=72.66 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=100.2
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
.++|++.++|+++++...++.|..||.. ++.. .+. ++ .+...+.+|+++++|+.+++...++.|..+|..
T Consensus 22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~-~~-------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE-VP-------TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE-CS-------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE-CC-------CCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 4889999999999988889999999986 6543 332 12 123679999999999999988888999999987
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE-EEEeecCcEEEEeecccchh
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~-sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+. ............+.++++.+ +|++.++. ..++.|..+|. .++... .+......+..++..++|+.
T Consensus 92 -g~----~~~~~~~~~~~~~~~i~~~~-~g~l~v~~---~~~~~i~~~~~---~g~~~~~~~~~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 92 -GG----FTEYPLPQPDSGPYGITEGL-NGDIWFTQ---LNGDRIGKLTA---DGTIYEYDLPNKGSYPAFITLGSDNAL 159 (300)
T ss_dssp -SC----EEEEECSSTTCCEEEEEECS-TTCEEEEE---TTTTEEEEECT---TSCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred -CC----eEEecCCCCCCCCccceECC-CCCEEEEc---cCCCeEEEECC---CCCEEEccCCCCCCCceeEEECCCCCE
Confidence 42 11122222446788999998 89988864 35778999996 233321 22323456888999998874
Q ss_pred hh
Q 000080 2381 AL 2382 (2389)
Q Consensus 2381 ~~ 2382 (2389)
.+
T Consensus 160 ~v 161 (300)
T 2qc5_A 160 WF 161 (300)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00067 Score=79.38 Aligned_cols=153 Identities=5% Similarity=-0.013 Sum_probs=100.1
Q ss_pred EEEEEEcCC-CCeEEEEe---CCCcEEEeecCCCceeeEecccCCCC-C-C------CCC--------------CCCCEE
Q 000080 2222 TRAFSSHPL-RPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAAN-V-P------PPY--------------ALASIS 2275 (2389)
Q Consensus 2222 VrsVAFsPd-G~~LASGS---~DgTIRLWDl~tGk~l~Tl~vl~gh~-~-p------~~G--------------H~~~V~ 2275 (2389)
...|+++|+ |..+++.+ .++.|++||+.+|+..+.+. +|. + + ..| -...+.
T Consensus 122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~---~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~ 198 (343)
T 2qe8_A 122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ---GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVN 198 (343)
T ss_dssp CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT---TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEE
T ss_pred cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec---CCCcccccccceeECCEEEEeccCCCceeceecccc
Confidence 367799986 55667776 78999999998888766552 221 0 0 000 012468
Q ss_pred EEEECCCCCEEEEEeCCCcEEEeeCCCC----Cc-cCcccc--eeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEE
Q 000080 2276 ALQFDHYGHRFASAALDGTVCTWQLEVG----GR-SNVRPM--ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2389)
Q Consensus 2276 sVaFSPDG~~LASgS~DgTVkLWDl~tg----gr-s~~k~l--~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrL 2348 (2389)
.|+|||||++|..++.+++ +||.+.+. +. +..+.. ....++.+....+++++ +|.++++. ..++.|.+
T Consensus 199 gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~---~~~~~V~~ 273 (343)
T 2qe8_A 199 GIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGD---LAHSAIGV 273 (343)
T ss_dssp EEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEE---GGGTEEEE
T ss_pred eeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEc---cCCCeEEE
Confidence 8999999999999988876 77766431 00 000001 12235556667899999 89998874 57889999
Q ss_pred eeCCCCCCCceEEEEee--cCcEEEEeecccchhhhccc
Q 000080 2349 WDTLAPPTSSRASITCH--EGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2349 WD~l~~tg~~v~sL~GH--~~~V~svA~~~~~~~~~s~~ 2385 (2389)
||. .+++ +..+... -....++++.++|+..++-+
T Consensus 274 ~d~--~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 274 ITS--ADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EET--TTTE-EEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred EEC--CCCC-EEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 995 2344 4444433 45688999999887555443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0012 Score=80.18 Aligned_cols=143 Identities=8% Similarity=-0.056 Sum_probs=96.4
Q ss_pred EEEcCCCCeEEEEeCCC--cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2225 FSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~Dg--TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
++|+|+|+.|+.+..++ .|..||...+.....+..... .+...+++++|+|++..|..+..+++|+.||.++
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT 249 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC
Confidence 79999999988888766 799999876665444421111 1235678999999544444478889999999987
Q ss_pred CCccCccccee--eeecCCCe-e-EEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec------------
Q 000080 2303 GGRSNVRPMES--CLCFSSHA-M-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE------------ 2366 (2389)
Q Consensus 2303 ggrs~~k~l~t--l~gHs~~V-~-sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~------------ 2366 (2389)
+.. ..+.. ..++.... . .++|+|.+|.++++- +.++.|+.||. .++ +..+.|+.
T Consensus 250 ~~~---~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d---~~~~~I~~~~~---~g~-~~~~~g~~~~~g~~dg~~~~ 319 (409)
T 3hrp_A 250 QEV---TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD---QNLSSVYKITP---DGE-CEWFCGSATQKTVQDGLREE 319 (409)
T ss_dssp CCE---EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE---TTTTEEEEECT---TCC-EEEEEECTTCCSCBCEEGGG
T ss_pred CCE---EEEecccccCCCCCCccccEEEeCCCCEEEEEe---CCCCEEEEEec---CCC-EEEEEeCCCCCCcCCCcccc
Confidence 521 11111 12233332 2 899999557777763 57889999996 333 66677764
Q ss_pred ---CcEEEEeecccchhhhc
Q 000080 2367 ---GLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2367 ---~~V~svA~~~~~~~~~s 2383 (2389)
+....++++++|+..++
T Consensus 320 ~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp CBCSSEEEEEECTTCCEEEE
T ss_pred cEeCCCeEEEEeCCCCEEEE
Confidence 45778999999985554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0015 Score=79.47 Aligned_cols=140 Identities=9% Similarity=-0.035 Sum_probs=97.1
Q ss_pred EEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCE--EEEEECC-CCCEEEEEeCCCcEEEe
Q 000080 2223 RAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASI--SALQFDH-YGHRFASAALDGTVCTW 2298 (2389)
Q Consensus 2223 rsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V--~sVaFSP-DG~~LASgS~DgTVkLW 2298 (2389)
+.++++| +|.+++ +..+++|+.||..++... .+...+ ..++...- ..++|+| +|+.+++-..+++|+.|
T Consensus 222 ~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-~~~~~~-----~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~ 294 (409)
T 3hrp_A 222 GAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-LIKQLE-----LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKI 294 (409)
T ss_dssp CBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-EEEECC-----CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-EEeccc-----ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEE
Confidence 6679999 566555 567889999999877632 331110 01122222 3999999 57888888889999999
Q ss_pred eCCCCCccCcccceeeeecC---------------CCeeEEEEecCCCCEEEEeecCC-CCCeEEEeeCCCCCCCceEEE
Q 000080 2299 QLEVGGRSNVRPMESCLCFS---------------SHAMDVSYITSSGSVIAAAGHSS-NGINVVVWDTLAPPTSSRASI 2362 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs---------------~~V~sVAFSP~DGslLASAG~sS-~D~TVrLWD~l~~tg~~v~sL 2362 (2389)
|.... +..+.++. .....++|+| +|+++++- + .++.|+.||+ ++ ..+.++
T Consensus 295 ~~~g~-------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad---~~~~~~I~~~~~--~~-G~v~~~ 360 (409)
T 3hrp_A 295 TPDGE-------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVD---GFKGYCLRKLDI--LD-GYVSTV 360 (409)
T ss_dssp CTTCC-------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEE---TTTTCEEEEEET--TT-TEEEEE
T ss_pred ecCCC-------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEe---CCCCCEEEEEEC--CC-CEEEEE
Confidence 87631 23333432 3578999999 89988763 6 7889999996 23 347788
Q ss_pred Eee---------------cCcEEEEeecccchhhhc
Q 000080 2363 TCH---------------EGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2363 ~GH---------------~~~V~svA~~~~~~~~~s 2383 (2389)
.|+ -+....||.+++|+..++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa 396 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA 396 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence 887 245789999999876554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.002 Score=73.82 Aligned_cols=138 Identities=7% Similarity=-0.075 Sum_probs=92.1
Q ss_pred EEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2223 RAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2223 rsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
...+|+|+|+ ++.++..++.|..|+. +|+ +..+.. +...+..++++|||+.+++...++.|.+||..
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~----------~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD----------ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEE----------SCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeC----------CCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 5569999999 7788889999999998 565 334431 12568999999999988887788999999986
Q ss_pred CCCccCccccee-eee-cCCCeeEEEEecCCCCEEEEe---ecCC-----------CCCeEEEeeCCCCCCCceEEEEee
Q 000080 2302 VGGRSNVRPMES-CLC-FSSHAMDVSYITSSGSVIAAA---GHSS-----------NGINVVVWDTLAPPTSSRASITCH 2365 (2389)
Q Consensus 2302 tggrs~~k~l~t-l~g-Hs~~V~sVAFSP~DGslLASA---G~sS-----------~D~TVrLWD~l~~tg~~v~sL~GH 2365 (2389)
+. ...+.. ..+ ....++++++.| +|++.+|- |... ..+.|..+|. .+++ +..+. +
T Consensus 116 -g~---~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~--~~g~-~~~~~-~ 186 (305)
T 3dr2_A 116 -GQ---AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP--DGSP-LQRMA-D 186 (305)
T ss_dssp -SC---EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS--SSCC-CEEEE-E
T ss_pred -CC---EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcC--CCCc-EEEEe-c
Confidence 42 111111 111 123467899999 99999872 1100 0234555664 2343 33344 5
Q ss_pred cCcEEEEeecccchhh
Q 000080 2366 EGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2366 ~~~V~svA~~~~~~~~ 2381 (2389)
......++++|+|++.
T Consensus 187 ~~~p~gl~~spdg~~l 202 (305)
T 3dr2_A 187 LDHPNGLAFSPDEQTL 202 (305)
T ss_dssp ESSEEEEEECTTSSEE
T ss_pred CCCCcceEEcCCCCEE
Confidence 5667889999999853
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00075 Score=77.29 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=91.3
Q ss_pred EEEEEcCCCCeEEE----EeC-------------CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCE
Q 000080 2223 RAFSSHPLRPFFLV----GSS-------------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHR 2285 (2389)
Q Consensus 2223 rsVAFsPdG~~LAS----GS~-------------DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~ 2285 (2389)
..++++|+|++++| |.. .+.|..+|..+|+...... ......++|+|||+.
T Consensus 134 ~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------------~~~p~gl~~spdg~~ 201 (305)
T 3dr2_A 134 NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD------------LDHPNGLAFSPDEQT 201 (305)
T ss_dssp CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE------------ESSEEEEEECTTSSE
T ss_pred CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec------------CCCCcceEEcCCCCE
Confidence 56799999999997 442 2568888876676433211 134688999999998
Q ss_pred EEEEeCC------CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCce
Q 000080 2286 FASAALD------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR 2359 (2389)
Q Consensus 2286 LASgS~D------gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v 2359 (2389)
|..+..+ +.|..||+..++....+.+.. ...+....+++.+ +|++.+++ .+ .|.+||. .++.+
T Consensus 202 lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~--~~~~~pdgi~~d~-~G~lwv~~----~~-gv~~~~~---~g~~~ 270 (305)
T 3dr2_A 202 LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS--VPDGLPDGFCVDR-GGWLWSSS----GT-GVCVFDS---DGQLL 270 (305)
T ss_dssp EEEEECCC---CCCEEEEEEEETTEEEEEEEEEC--CSSSCCCSEEECT-TSCEEECC----SS-EEEEECT---TSCEE
T ss_pred EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE--CCCCCCCeEEECC-CCCEEEec----CC-cEEEECC---CCCEE
Confidence 8777765 789999987531000011111 1234455688999 89977652 33 4999995 57777
Q ss_pred EEEEeecCcEEEEeecccchhh
Q 000080 2360 ASITCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2360 ~sL~GH~~~V~svA~~~~~~~~ 2381 (2389)
..+..+. .+.++++.++++..
T Consensus 271 ~~~~~~~-~~~~~~f~~d~~~L 291 (305)
T 3dr2_A 271 GHIPTPG-TASNCTFDQAQQRL 291 (305)
T ss_dssp EEEECSS-CCCEEEECTTSCEE
T ss_pred EEEECCC-ceeEEEEeCCCCEE
Confidence 8887655 68889998888643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=79.13 Aligned_cols=117 Identities=12% Similarity=-0.016 Sum_probs=83.9
Q ss_pred EEcCCCCeEEEEeC-----CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe----------
Q 000080 2226 SSHPLRPFFLVGSS-----NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA---------- 2290 (2389)
Q Consensus 2226 AFsPdG~~LASGS~-----DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS---------- 2290 (2389)
...|+++.+..... +++|.+.|..+++.+.++.+ |. .. . |+|||||+++..++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v---------G~-~P-~-va~spDG~~lyVan~~~~r~~~G~ 106 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---------GF-LP-N-PVVADDGSFIAHASTVFSRIARGE 106 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---------CS-SC-E-EEECTTSSCEEEEEEEEEETTEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC---------CC-CC-c-EEECCCCCEEEEEcccccccccCC
Confidence 56899997666554 68999999999998888742 22 22 4 99999999887765
Q ss_pred CCCcEEEeeCCCCCccCcccceeeeec-------CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESCLCF-------SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl~gH-------s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
.+++|.+||..+. +.+.++.-- ...-..++|+| ||++|..+.. ..+++|.++|+ .+++.+.++.
T Consensus 107 ~~~~VsviD~~t~-----~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~-~~~~~VsVID~--~t~~vv~tI~ 177 (386)
T 3sjl_D 107 RTDYVEVFDPVTL-----LPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQF-SPAPAVGVVDL--EGKAFKRMLD 177 (386)
T ss_dssp EEEEEEEECTTTC-----CEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEEC-SSSCEEEEEET--TTTEEEEEEE
T ss_pred CCCEEEEEECCCC-----eEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEc-CCCCeEEEEEC--CCCcEEEEEE
Confidence 4789999999986 344444211 12345699999 9998776531 13689999998 4666666664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00088 Score=87.42 Aligned_cols=115 Identities=8% Similarity=-0.019 Sum_probs=76.4
Q ss_pred eEEEEEEc-CCCCeEEEEe-----CCCcEEEeecCCC-ceeeE-ecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC
Q 000080 2221 STRAFSSH-PLRPFFLVGS-----SNTHIYLWEFGKD-KATAT-YGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2389)
Q Consensus 2221 ~VrsVAFs-PdG~~LASGS-----~DgTIRLWDl~tG-k~l~T-l~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D 2292 (2389)
.+.+.+|| |||++||-+. +..+|+++|+.+| +.+.. +. ....+++|+|||+.|+-.+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-------------~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-------------GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-------------EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-------------CceeeEEEecCCCEEEEEEEC
Confidence 45778999 9999888443 3346999999988 63221 10 113468899999999988876
Q ss_pred -----CcEEEeeCCCCCccCcccceeee-ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC
Q 000080 2293 -----GTVCTWQLEVGGRSNVRPMESCL-CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2389)
Q Consensus 2293 -----gTVkLWDl~tggrs~~k~l~tl~-gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l 2352 (2389)
..|.+|++.++. + .....+. .......+++++| ||+.|+..........|.++|+.
T Consensus 242 ~~~~~~~v~~~~lgt~~-~--~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQ-S--EDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp TTCCEEEEEEEETTSCG-G--GCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESS
T ss_pred CCCCCCEEEEEECCCCc-h--hcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECC
Confidence 358888887752 1 1112222 2334566889999 99988865433345568888873
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00075 Score=80.53 Aligned_cols=122 Identities=9% Similarity=-0.028 Sum_probs=65.7
Q ss_pred CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCccc
Q 000080 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2389)
Q Consensus 2231 G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~ 2310 (2389)
+..|++|+.|++|+.||..+|+.+.++. . + . .+.++|+|+.+.+++.|++|+.||.++|. .
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~---~-------~-~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~-----~ 152 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLS---S-------A-F---ADSLSPSTSLLYLGRTEYTITMYDTKTRE-----L 152 (369)
T ss_dssp ---CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEECCCSSSSS-----C
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEec---C-------C-C---cccccccCCEEEEEecCCEEEEEECCCCC-----E
Confidence 4567788999999999999999887763 1 1 1 24678899999999999999999999973 2
Q ss_pred ceeeeecCCCeeEEEEecC---CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2311 MESCLCFSSHAMDVSYITS---SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2311 l~tl~gHs~~V~sVAFSP~---DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
..+...+. ....++.++ ++.+++ + +.|+.|..||. .+++.+.++.-...-+...+.+++|.
T Consensus 153 ~W~~~~~~--~~~~~~~~~~~~~~~v~~-~---~~dg~v~a~d~--~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 153 RWNATYFD--YAASLPEDDVDYKMSHFV-S---NGDGLVVTVDS--ESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp CCEEEEEE--ECCBCCCCCTTCCCCEEE-E---ETSCEEEEECT--TTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred EEeEeccc--ccCccccCCccccceEEE-E---CCCCEEEEEEC--CCCcEEEEecCCCceEEEEEecCCce
Confidence 22222111 122333331 145554 3 47899999997 57777777764333334566666664
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00026 Score=84.53 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=44.1
Q ss_pred CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCC
Q 000080 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGG 2304 (2389)
Q Consensus 2230 dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tgg 2304 (2389)
++..+++|+.|++|+.||..+|+.+.++.. +.+.+..+.++|+.+++++.||+|+.||.++|.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC------------CCSCCCC-----CCEEECTTTCCEEEC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCc
Confidence 577899999999999999999999888751 224455566889899999999999999998873
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.013 Score=70.58 Aligned_cols=113 Identities=11% Similarity=-0.043 Sum_probs=75.7
Q ss_pred EcCCCCeEEEEeC--CC---cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe----------C
Q 000080 2227 SHPLRPFFLVGSS--NT---HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------L 2291 (2389)
Q Consensus 2227 FsPdG~~LASGS~--Dg---TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS----------~ 2291 (2389)
..|+++++..... +. +|.++|..+++.+.++. .|. . ..++|||||+++..+. .
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~---------~g~-~--p~i~~spDg~~lyv~n~~~~~~~rg~~ 95 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN---------GGF-L--PNPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEec---------CCC-C--CCeEECCCCCEEEEEeccccccccCCC
Confidence 4467765444332 22 89999999999887763 122 2 2899999999998886 4
Q ss_pred CCcEEEeeCCCCCccCcccceeeeec-------CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEE
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLCF-------SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS 2361 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~gH-------s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~s 2361 (2389)
|++|.++|+.+.. .+.+..-- ...-..++|+| ||++|..+.. ..+++|.++| . +++.+..
T Consensus 96 ~~~v~viD~~t~~-----~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~-~~~~~v~viD-~--t~~~~~~ 162 (373)
T 2mad_H 96 TDYVEVFDPVTFL-----PIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQF-AAGPAVGLVV-Q--GGSSDDQ 162 (373)
T ss_pred CCeEEEEECCCCc-----EEEEEECCCccccccCCCccceEECC-CCCEEEEEec-CCCCeEEEEE-C--CCCEEeE
Confidence 7899999998752 33322110 12345799999 9999887631 1257899999 4 4555555
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.02 Score=68.89 Aligned_cols=112 Identities=8% Similarity=-0.135 Sum_probs=70.7
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC--
Q 000080 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS----------~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-- 2291 (2389)
.++|||||+++..+. .|++|.+||..+.+.+.+... ++......| ..-..++|||||++|..+..
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~-~~~~~~~~g--~~p~~~~~spDG~~l~v~n~~~ 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL-PDAPRFDVG--PYSWMNANTPNNADLLFFQFAA 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC-CCccccccC--CCccceEECCCCCEEEEEecCC
Confidence 569999999888775 378899999998888777642 200000001 22468999999999998874
Q ss_pred CCcEEEeeCCCCCccCccccee-eeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~t-l~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
+++|.++| +++. ...+ .. ... ++.+.|...+.+++. +.|+++.++|.
T Consensus 147 ~~~v~viD-~t~~-----~~~~~i~-~~~---~~~~~~~~~~~~~~~---~~dg~~~~vd~ 194 (373)
T 2mad_H 147 GPAVGLVV-QGGS-----SDDQLLS-SPT---CYHIHPGAPSTFYLL---CAQGGLAKTDH 194 (373)
T ss_pred CCeEEEEE-CCCC-----EEeEEcC-CCc---eEEEEeCCCceEEEE---cCCCCEEEEEC
Confidence 58899999 8762 3333 22 111 244555222333332 35666666664
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.012 Score=76.24 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=87.7
Q ss_pred EEcCCC---CeEEEEeCCCcEEEeecCCCceeeEecccCCC----------------------C---CC-CCCCCCCEEE
Q 000080 2226 SSHPLR---PFFLVGSSNTHIYLWEFGKDKATATYGVLPAA----------------------N---VP-PPYALASISA 2276 (2389)
Q Consensus 2226 AFsPdG---~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh----------------------~---~p-~~GH~~~V~s 2276 (2389)
....+| +.|+.++.||.|+++|..+|+.+..+..-+.. . .| ..|...+ ..
T Consensus 319 ~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~ 397 (677)
T 1kb0_A 319 DIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW-HP 397 (677)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS-SC
T ss_pred ecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCC-CC
Confidence 444588 78999999999999999999987665311000 0 00 1122122 36
Q ss_pred EEECCCCCEEEEEeCC-------------------------------------------CcEEEeeCCCCCccCccccee
Q 000080 2277 LQFDHYGHRFASAALD-------------------------------------------GTVCTWQLEVGGRSNVRPMES 2313 (2389)
Q Consensus 2277 VaFSPDG~~LASgS~D-------------------------------------------gTVkLWDl~tggrs~~k~l~t 2313 (2389)
++|+|++.++.+.+.| |+|..||+++| +.+.+
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-----~~~W~ 472 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-----KAAWS 472 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-----EEEEE
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-----cEEee
Confidence 8999999888776542 78999999997 34444
Q ss_pred eeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee
Q 000080 2314 CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365 (2389)
Q Consensus 2314 l~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH 2365 (2389)
.. +...+.+..+++ +|.++..+ +.|+++++||. .+++.+.++.-.
T Consensus 473 ~~-~~~~~~~g~~~~-~g~~v~~g---~~dg~l~a~D~--~tG~~lw~~~~~ 517 (677)
T 1kb0_A 473 VE-HVSPWNGGTLTT-AGNVVFQG---TADGRLVAYHA--ATGEKLWEAPTG 517 (677)
T ss_dssp EE-ESSSCCCCEEEE-TTTEEEEE---CTTSEEEEEET--TTCCEEEEEECS
T ss_pred cC-CCCCCcCcceEe-CCCEEEEE---CCCCcEEEEEC--CCCceeeeeeCC
Confidence 43 334455666777 66777764 58999999997 578888888643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.029 Score=69.61 Aligned_cols=114 Identities=11% Similarity=-0.039 Sum_probs=78.7
Q ss_pred CCCCeEEEE-eCC----CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe----------CCC
Q 000080 2229 PLRPFFLVG-SSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDG 2293 (2389)
Q Consensus 2229 PdG~~LASG-S~D----gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS----------~Dg 2293 (2389)
|+++.+... ..+ ++|.+.|..+++.+.++.+ |. .. .|+|||||+++..+. .++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v---------G~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG---------GF-LP--HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE---------CS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC---------CC-CC--ceEECCCCCEEEEEeccccccccCCCCC
Confidence 566644433 333 7999999999999888752 22 23 799999999887776 478
Q ss_pred cEEEeeCCCCCccCcccceeee-e------cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2294 TVCTWQLEVGGRSNVRPMESCL-C------FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~tl~-g------Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
+|.++|..++ +.+.++. + ....-..++|+| ||++|..+.. ..+++|-+-|+ .+.+.+..+.
T Consensus 150 ~VsviD~~t~-----~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~-~~~~~VsVID~--~t~kvv~~I~ 217 (426)
T 3c75_H 150 YVEVFDPVTF-----LPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQF-SPAPAVGVVDL--EGKTFDRMLD 217 (426)
T ss_dssp EEEEECTTTC-----CEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEEC-SSSCEEEEEET--TTTEEEEEEE
T ss_pred EEEEEECCCC-----cEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEec-CCCCeEEEEEC--CCCeEEEEEE
Confidence 9999999986 2344332 1 012345689999 8988877531 13688999998 4556566664
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0089 Score=76.90 Aligned_cols=130 Identities=9% Similarity=0.016 Sum_probs=82.4
Q ss_pred CcEEEeecCC--Cce-eeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEE-EeCCCcEEEeeCCCCCc---cCc----c
Q 000080 2241 THIYLWEFGK--DKA-TATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGTVCTWQLEVGGR---SNV----R 2309 (2389)
Q Consensus 2241 gTIRLWDl~t--Gk~-l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LAS-gS~DgTVkLWDl~tggr---s~~----k 2309 (2389)
+.|.+-|..+ ++. +.+..+ . .....|.|||||+++.. +-.+.+|.+.|+++... ..+ .
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipv---g--------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPI---A--------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEE---E--------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred CcEEEEeCcccCCceeEEEEec---C--------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 3589999887 554 444421 1 23478999999985555 55889999999985300 000 0
Q ss_pred cceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCC--------CCCceEEEEeecCc-----EEEEeecc
Q 000080 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP--------PTSSRASITCHEGL-----YDLFLPLK 2376 (2389)
Q Consensus 2310 ~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~--------tg~~v~sL~GH~~~-----V~svA~~~ 2376 (2389)
...+.. -....+-++|+| ||....+. -.|++|..||+..+ ..+.++++.-|-.. ...++.++
T Consensus 323 v~~~v~-vG~gP~h~aF~~-dG~aY~t~---~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~ 397 (595)
T 1fwx_A 323 VVAEPE-LGLGPLHTAFDG-RGNAYTSL---FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA 397 (595)
T ss_dssp EEECCB-CCSCEEEEEECT-TSEEEEEE---TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred eEEEcC-CCCCcceEEECC-CCeEEEEE---ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC
Confidence 111211 124567899999 88444443 48899999997321 13457777665442 22446689
Q ss_pred cchhhhcccc
Q 000080 2377 LLNFALSKCR 2386 (2389)
Q Consensus 2377 ~~~~~~s~~~ 2386 (2389)
+|+|+++-||
T Consensus 398 DGk~l~~~Nk 407 (595)
T 1fwx_A 398 TNDWLVCLSK 407 (595)
T ss_dssp CSSEEEEEES
T ss_pred CCCEEEEcCC
Confidence 9999998886
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.015 Score=70.68 Aligned_cols=100 Identities=10% Similarity=-0.092 Sum_probs=72.0
Q ss_pred eEEEEeCCC----cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe----------CCCcEEEe
Q 000080 2233 FFLVGSSNT----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDGTVCTW 2298 (2389)
Q Consensus 2233 ~LASGS~Dg----TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS----------~DgTVkLW 2298 (2389)
.+++-..++ +|.+.|..+++.+.++.+ |. .. .++|||||+++..+. .|++|.+|
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v---------G~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsvi 101 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLG---------AF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEE---------CT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeC---------CC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 455555454 899999999999988752 23 23 699999999888886 47999999
Q ss_pred eCCCCCccCcccceeeeec-------CCCeeEEEEecCCCCEEEEeecCCCCCeEEE--eeC
Q 000080 2299 QLEVGGRSNVRPMESCLCF-------SSHAMDVSYITSSGSVIAAAGHSSNGINVVV--WDT 2351 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gH-------s~~V~sVAFSP~DGslLASAG~sS~D~TVrL--WD~ 2351 (2389)
|+.++ +.+.++.-. ......++|+| ||++|..+-. ..+++|.+ +|+
T Consensus 102 D~~T~-----~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~-~~~~~v~V~~iD~ 156 (368)
T 1mda_H 102 DPVTF-----LPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLF-GSSAAAGLSVPGA 156 (368)
T ss_dssp CTTTC-----CEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEEC-SSSCEEEEEETTT
T ss_pred ECCCC-----CEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEcc-CCCCeEEEEEEch
Confidence 99987 345555322 02245699999 8988887521 13567888 997
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.031 Score=72.64 Aligned_cols=167 Identities=10% Similarity=0.054 Sum_probs=100.1
Q ss_pred ccccccccccccccCCCC-----cCceeEEEEEEcCCCC---eEEEEeCCCcEEEeecCCCceeeEecccC---------
Q 000080 2199 LGWETQDDFEDYVDPPAT-----VENISTRAFSSHPLRP---FFLVGSSNTHIYLWEFGKDKATATYGVLP--------- 2261 (2389)
Q Consensus 2199 ~~~d~~~~~~~~~d~~at-----v~ni~VrsVAFsPdG~---~LASGS~DgTIRLWDl~tGk~l~Tl~vl~--------- 2261 (2389)
+.-++-+.+|.+...... ..+. ..-.....+|+ .++.++.||.++++|..+|+.+......+
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~-~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQH-MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSC-EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEccCCceeEeeecCCcccccccCCCC-cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 455666777776421111 1111 11113334675 79999999999999999999874322100
Q ss_pred ----------------CCC----CC-CCCCCCCEEEEEECCCCCEEEEEeC-----------------------------
Q 000080 2262 ----------------AAN----VP-PPYALASISALQFDHYGHRFASAAL----------------------------- 2291 (2389)
Q Consensus 2262 ----------------gh~----~p-~~GH~~~V~sVaFSPDG~~LASgS~----------------------------- 2291 (2389)
... .| ..|...+ ..++|+|+.+.+.+.+.
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w-~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDW-QPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCS-SCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCC-CcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 000 00 0111111 24899999888877632
Q ss_pred ----------------CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCC
Q 000080 2292 ----------------DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP 2355 (2389)
Q Consensus 2292 ----------------DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~t 2355 (2389)
+|+|+.||++|| +...+...+. .+..-.++. .|.++..+ +.|+.++.||. .+
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG-----~~~W~~~~~~-~~~~g~~~t-agglvf~g---t~dg~l~a~D~--~t 505 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ-----QAAWEVPYVT-IFNGGTLST-AGNLVFEG---SADGRVIAYAA--DT 505 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTT-----EEEEEEEESS-SCCCCEEEE-TTTEEEEE---CTTSEEEEEET--TT
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCC-----CeEeEccCCC-CccCccceE-CCCEEEEE---CCCCcEEEEEC--CC
Confidence 488999999997 3455554443 334446777 67778775 68999999997 68
Q ss_pred CCceEEEEeecCcE-EEEeecccch
Q 000080 2356 TSSRASITCHEGLY-DLFLPLKLLN 2379 (2389)
Q Consensus 2356 g~~v~sL~GH~~~V-~svA~~~~~~ 2379 (2389)
++.+.+++...+.+ .-+.+..+|+
T Consensus 506 G~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 506 GEKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp CCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CccceeeeCCCCcccCceEEEECCE
Confidence 88888887543222 2344444554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.029 Score=70.33 Aligned_cols=146 Identities=8% Similarity=0.004 Sum_probs=98.1
Q ss_pred EEEEEcCCCCeEEEEeCC------CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe------
Q 000080 2223 RAFSSHPLRPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA------ 2290 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~D------gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS------ 2290 (2389)
+.+...|+| +++|...| +.|-+.|..+++.+.++.. ..+ | ...-+.+.|+|+++.+.|..
T Consensus 141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~-~~~--~----~~~~Yd~~~~p~~~~mvsS~wg~p~~ 212 (462)
T 2ece_A 141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI-DRG--D----QYLAYDFWWNLPNEVLVSSEWAVPNT 212 (462)
T ss_dssp EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS-BCT--T----CCCCCCEEEETTTTEEEECBCCCHHH
T ss_pred cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc-CCC--C----ccccceEEECCCCCEEEEccCcCccc
Confidence 667899999 88887777 7999999999999888752 111 1 12235688899999998885
Q ss_pred -------------CCCcEEEeeCCCCCccCcccceeeee--cCCCeeEEEE--ecCCCCEEEEeecCC-----CCCeEEE
Q 000080 2291 -------------LDGTVCTWQLEVGGRSNVRPMESCLC--FSSHAMDVSY--ITSSGSVIAAAGHSS-----NGINVVV 2348 (2389)
Q Consensus 2291 -------------~DgTVkLWDl~tggrs~~k~l~tl~g--Hs~~V~sVAF--SP~DGslLASAG~sS-----~D~TVrL 2348 (2389)
.+++|.+||+.++ +.+.++.- .......++| +| +|+++-.+. . .+++|.+
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~-----k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~--e~~~~~Lss~V~v 284 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKR-----KRIHSLTLGEENRMALELRPLHDP-TKLMGFINM--VVSLKDLSSSIWL 284 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTT-----EEEEEEESCTTEEEEEEEEECSST-TCCEEEEEE--EEETTTCCEEEEE
T ss_pred cccccchhhhhhccCCEEEEEECCCC-----cEeeEEecCCCCCccceeEeeECC-CCCEEEEEE--eeeccCCCceEEE
Confidence 3799999999975 23334332 1123445666 88 888777652 4 5678888
Q ss_pred eeCCCCCCCc--eEEE--Eee----------------cCcEEEEeecccchhhhcccc
Q 000080 2349 WDTLAPPTSS--RASI--TCH----------------EGLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2349 WD~l~~tg~~--v~sL--~GH----------------~~~V~svA~~~~~~~~~s~~~ 2386 (2389)
|... .++. ++.+ ... .+....++.+++|+|..--||
T Consensus 285 ~~~d--~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr 340 (462)
T 2ece_A 285 WFYE--DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW 340 (462)
T ss_dssp EEEE--TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred EEec--CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence 7753 1221 1221 111 244678899999999876555
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=95.85 E-value=0.032 Score=68.59 Aligned_cols=76 Identities=13% Similarity=-0.057 Sum_probs=56.2
Q ss_pred EEEcCCCCeEEEEe----------CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC--C
Q 000080 2225 FSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL--D 2292 (2389)
Q Consensus 2225 VAFsPdG~~LASGS----------~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~--D 2292 (2389)
++++|||+++..++ .+++|.+||..+++.+.++.+ ++....+ ....-+.++|+|||+++..+.. +
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v-~~g~r~~--~g~~P~~~a~spDGk~lyVan~~~~ 159 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL-PDAPRFL--VGTYPWMTSLTPDGKTLLFYQFSPA 159 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE-TTCCCCC--BSCCGGGEEECTTSSEEEEEECSSS
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEEC-CCccccc--cCCCCceEEEcCCCCEEEEEEcCCC
Confidence 79999999876655 477899999999998888742 2100000 0123467999999998887763 7
Q ss_pred CcEEEeeCCCC
Q 000080 2293 GTVCTWQLEVG 2303 (2389)
Q Consensus 2293 gTVkLWDl~tg 2303 (2389)
++|.++|++++
T Consensus 160 ~~VsVID~~t~ 170 (386)
T 3sjl_D 160 PAVGVVDLEGK 170 (386)
T ss_dssp CEEEEEETTTT
T ss_pred CeEEEEECCCC
Confidence 99999999986
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.062 Score=67.45 Aligned_cols=145 Identities=14% Similarity=0.081 Sum_probs=93.8
Q ss_pred CCCCe-EEEEeCCCcEEEeecCCC----ceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC------CcEEE
Q 000080 2229 PLRPF-FLVGSSNTHIYLWEFGKD----KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD------GTVCT 2297 (2389)
Q Consensus 2229 PdG~~-LASGS~DgTIRLWDl~tG----k~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D------gTVkL 2297 (2389)
+++++ +++|-.+.+|++.|+.+. +.+++.+. +.-....| ...=+.+.++||| .++++..| |+|-+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~--~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP--EEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH--HHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeech--hhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 78885 556778899999999755 55565520 00000001 1234678999999 88888877 89999
Q ss_pred eeCCCCCccCcccceeee---ecCCCeeEEEEecCCCCEEEEeecC----------------CCCCeEEEeeCCCCCCCc
Q 000080 2298 WQLEVGGRSNVRPMESCL---CFSSHAMDVSYITSSGSVIAAAGHS----------------SNGINVVVWDTLAPPTSS 2358 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~---gHs~~V~sVAFSP~DGslLASAG~s----------------S~D~TVrLWD~l~~tg~~ 2358 (2389)
.|.+++ +.+.++. +-....+++.|+| +++++.|+-++ ..+.+|.+||+ .+++.
T Consensus 169 lD~~T~-----~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~--~~~k~ 240 (462)
T 2ece_A 169 LDHYSF-----EPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL--RKRKR 240 (462)
T ss_dssp ECTTTC-----CEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET--TTTEE
T ss_pred EECCCC-----eEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC--CCCcE
Confidence 999986 2344443 1224456788999 89999885211 12789999998 34556
Q ss_pred eEEEEeec--CcEEE--Eeecccchhhhccc
Q 000080 2359 RASITCHE--GLYDL--FLPLKLLNFALSKC 2385 (2389)
Q Consensus 2359 v~sL~GH~--~~V~s--vA~~~~~~~~~s~~ 2385 (2389)
++++.--. ..... ++++|+|++|.--|
T Consensus 241 ~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 241 IHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp EEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred eeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 77776421 12333 45599998875443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.27 Score=56.74 Aligned_cols=143 Identities=10% Similarity=0.017 Sum_probs=84.2
Q ss_pred EEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecc-cCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeC--------
Q 000080 2223 RAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGV-LPAANVPPPYALASISALQFDH-YGHRFASAAL-------- 2291 (2389)
Q Consensus 2223 rsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~v-l~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~-------- 2291 (2389)
..|++.| +|+++++... +.|..+|..+++ +.++.. .++ ........|++.| +|+..++-..
T Consensus 83 ~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~-~~~~~~~~~~------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY-YHLSVVGSEGGH-ATQLATSVDG------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp EEEEEETTTTEEEEEETT-TEEEEECTTCEE-CEEEESEETT------EECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred ceEEEcCCCCcEEEEECC-CCEEEEeCCCCE-EEEecccCCC------CcccccceEEEecCCCEEEEECCccccccccc
Confidence 6789998 7776665443 448888976554 333321 011 1124578999999 9998887543
Q ss_pred ---------CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE
Q 000080 2292 ---------DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2389)
Q Consensus 2292 ---------DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL 2362 (2389)
++.|..+|..++. +..+..--...+.++++| ||+.|..+- +.++.|..+|+..........+
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~------~~~~~~~~~~p~gia~~~-dg~~lyv~d--~~~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKE------TTLLLKELHVPGGAEVSA-DSSFVLVAE--FLSHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTE------EEEEEEEESCCCEEEECT-TSSEEEEEE--GGGTEEEEEESSSTTTTCEEEE
T ss_pred ceehcccCCCceEEEEeCCCCE------EEEeccCCccCcceEECC-CCCEEEEEe--CCCCeEEEEECCCCcCCccceE
Confidence 4678888887641 111111123456799999 888554332 3567899998731111122233
Q ss_pred EeecCcEEEEeecccchhhhc
Q 000080 2363 TCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2363 ~GH~~~V~svA~~~~~~~~~s 2383 (2389)
....+ -..++..++|+.-++
T Consensus 226 ~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 226 VKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EECSS-EEEEEECTTSCEEEE
T ss_pred EeCCC-CCCeEECCCCCEEEE
Confidence 22223 566788888875444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.28 Score=57.56 Aligned_cols=119 Identities=7% Similarity=-0.032 Sum_probs=76.0
Q ss_pred EEEEEEcCCCCeEEEEeC--CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLRPFFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~--DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
...++|+|||.++++.+. +++|+..|..+|+.++++. ++.+ .....+++. +++..++.-.+++|.++|
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~--------~fgeGi~~~-g~~lyv~t~~~~~v~viD 92 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDS--------YFGEGLTLL-NEKLYQVVWLKNIGFIYD 92 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTT--------CCEEEEEEE-TTEEEEEETTCSEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCC--------cceEEEEEe-CCEEEEEEecCCEEEEEE
Confidence 367799999887777664 6899999999999888864 2222 223445554 234555566789999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
.++. +.+.++.--... ...+++ ||+.|..+ ..+++|.+.|+ .+.+.+.++.
T Consensus 93 ~~t~-----~v~~~i~~g~~~--g~glt~-Dg~~l~vs---~gs~~l~viD~--~t~~v~~~I~ 143 (266)
T 2iwa_A 93 RRTL-----SNIKNFTHQMKD--GWGLAT-DGKILYGS---DGTSILYEIDP--HTFKLIKKHN 143 (266)
T ss_dssp TTTT-----EEEEEEECCSSS--CCEEEE-CSSSEEEE---CSSSEEEEECT--TTCCEEEEEE
T ss_pred CCCC-----cEEEEEECCCCC--eEEEEE-CCCEEEEE---CCCCeEEEEEC--CCCcEEEEEE
Confidence 9986 344444211122 234666 55555443 24679999997 4555555554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.28 Score=64.25 Aligned_cols=100 Identities=10% Similarity=0.060 Sum_probs=62.6
Q ss_pred EEEEcCCCCeEEEEeCC-----CcEEEeecCCCce--eeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC---CC
Q 000080 2224 AFSSHPLRPFFLVGSSN-----THIYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DG 2293 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS~D-----gTIRLWDl~tGk~--l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~---Dg 2293 (2389)
+++|+|||+.|+-.+.| ..|+++++++++. +..+.. . +......+.+||||++|+..+. ..
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~--~-------~~~~~~~~~~SpDg~~l~~~~~~~~~~ 295 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE--H-------NPLFSAFMYKAADTNTLCIGSQSPETA 295 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC--C-------CTTCEEEEEECTTSSEEEEEEECSSCE
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec--C-------CCceEEEEEECCCCCEEEEEecCCCCc
Confidence 46899999988877766 4799999988753 233431 1 1245778999999999987763 34
Q ss_pred cEEEeeCCCCCccCccc-ceee-eecCCCeeEEEEecCCCCEEEE
Q 000080 2294 TVCTWQLEVGGRSNVRP-MESC-LCFSSHAMDVSYITSSGSVIAA 2336 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~-l~tl-~gHs~~V~sVAFSP~DGslLAS 2336 (2389)
.|.++|+.++. . .+ +..+ .+.....+++.|+. ++.++..
T Consensus 296 ~l~~~d~~~~~-~--~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~ 336 (751)
T 2xe4_A 296 EVHLLDLRKGN-A--HNTLEIVRPREKGVRYDVQMHG-TSHLVIL 336 (751)
T ss_dssp EEEEEESSSCT-T--CCCEEESSCCCTTCCEEEEEET-TTEEEEE
T ss_pred eEEEEECCCCC-C--CceeEEeecCCCCceEEEeeee-CCEEEEE
Confidence 57788988751 0 11 0222 23344555665554 3344444
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=94.77 E-value=1.2 Score=49.96 Aligned_cols=141 Identities=10% Similarity=0.003 Sum_probs=86.2
Q ss_pred EEEEEEcCCC-CeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG-~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWD 2299 (2389)
...++++|++ .++++-..++.|..+|...+.. .++. +. .......|+|+|++ +.+.+-...++|...+
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~--~~-------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII--RQ-------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE--CT-------TCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEE--EC-------CCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 4788999965 4666666788999999864443 3331 11 12457999999975 5555666778999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE-eecCcEEEEeecccc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~-GH~~~V~svA~~~~~ 2378 (2389)
+.... .+.+ ........+++++.|++|.+.++. .....+.|...++ .++..+.+. ..-..-..++.++++
T Consensus 108 ~~g~~---~~~~--~~~~~~~P~~i~vd~~~g~lyv~~-~~~~~~~I~~~~~---dg~~~~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 108 MDGTQ---RRVL--FDTGLVNPRGIVTDPVRGNLYWTD-WNRDNPKIETSHM---DGTNRRILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp TTSCS---CEEE--ECSSCSSEEEEEEETTTTEEEEEE-CCSSSCEEEEEET---TSCCCEEEECTTCSCEEEEEEETTT
T ss_pred cCCCC---EEEE--EECCCCCccEEEEeeCCCEEEEEE-CCCCCcEEEEEec---CCCCcEEEEECCCCCCcEEEEcCCC
Confidence 87421 1111 111124568999999445555553 1112467888886 234444442 222446688888877
Q ss_pred hhh
Q 000080 2379 NFA 2381 (2389)
Q Consensus 2379 ~~~ 2381 (2389)
+++
T Consensus 179 ~~l 181 (267)
T 1npe_A 179 SQL 181 (267)
T ss_dssp TEE
T ss_pred CEE
Confidence 643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.16 Score=63.11 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=81.7
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCcee--eEecccCCCCCCCCC-CCCCEEEEEECCCCCEEEEEeC----------
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKAT--ATYGVLPAANVPPPY-ALASISALQFDHYGHRFASAAL---------- 2291 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l--~Tl~vl~gh~~p~~G-H~~~V~sVaFSPDG~~LASgS~---------- 2291 (2389)
++|.|+|..++-.+.+++|.+.|...+... .++........+ .| .-.....++|+|||+++-.+..
T Consensus 270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~-~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERA-DDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGG-GTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSC
T ss_pred eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccc-cccccCCceeeEEcCCCCEEEEEecccccccccCC
Confidence 378999997777778899999998655421 222110000000 00 0011224689999987666542
Q ss_pred CCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCC-EEEEeecCCCCCeEEEeeCCCCCCCceEEE
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGs-lLASAG~sS~D~TVrLWD~l~~tg~~v~sL 2362 (2389)
+++|.+.|+.+. +.+.++.-- ...+.++|+| ||+ ++.++- ..+++|-++|+ .+.+.++++
T Consensus 349 s~~VsVID~~T~-----kvv~~I~vg-~~P~gia~sp-Dg~~~lyv~n--~~s~~VsVID~--~t~kvv~tI 409 (426)
T 3c75_H 349 SRFVVVLNAETG-----ERINKIELG-HEIDSINVSQ-DAEPLLYALS--AGTQTLHIYDA--ATGEELRSV 409 (426)
T ss_dssp EEEEEEEETTTC-----CEEEEEEEE-EEECEEEECC-SSSCEEEEEE--TTTTEEEEEET--TTCCEEEEE
T ss_pred CCEEEEEECCCC-----eEEEEEECC-CCcCeEEEcc-CCCEEEEEEc--CCCCeEEEEEC--CCCCEEEEe
Confidence 468999999986 344444321 2477899999 898 887763 35899999998 577778886
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.31 Score=57.25 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=73.3
Q ss_pred EEEEEEcCCCCeEEEEeCCC--cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEE-EeCCCcEEEe
Q 000080 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGTVCTW 2298 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~Dg--TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LAS-gS~DgTVkLW 2298 (2389)
+..+.|+ ++.++.|++.+| +|+..|+.+|+.+++.. ++. ........++|++|-. .-.++++.++
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~~----------~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LGK----------RYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CCT----------TCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cCC----------ccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 4777999 788899998877 99999999999888774 221 1233333345555544 4458999999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL 2362 (2389)
|.++. +.+.++.- ...-+. +.+ ||+.|..+ ..+++|.++|+ .+.+.+.++
T Consensus 113 D~~t~-----~~~~ti~~-~~eG~g--lt~-dg~~L~~S---dGs~~i~~iDp--~T~~v~~~I 162 (262)
T 3nol_A 113 NIRNL-----RQVRSFNY-DGEGWG--LTH-NDQYLIMS---DGTPVLRFLDP--ESLTPVRTI 162 (262)
T ss_dssp ETTTC-----CEEEEEEC-SSCCCC--EEE-CSSCEEEC---CSSSEEEEECT--TTCSEEEEE
T ss_pred ECccC-----cEEEEEEC-CCCceE--Eec-CCCEEEEE---CCCCeEEEEcC--CCCeEEEEE
Confidence 99986 24444432 222233 445 45555442 23567999997 344555554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.095 Score=68.04 Aligned_cols=79 Identities=13% Similarity=0.187 Sum_probs=57.3
Q ss_pred CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeee-ecCC
Q 000080 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCL-CFSS 2319 (2389)
Q Consensus 2241 gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~-gHs~ 2319 (2389)
++|+.||..+|+.+-.+.. ...+....++++|.++..++.||+++.||.++|. .+.++. ++..
T Consensus 457 g~l~A~D~~tG~~~W~~~~-----------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~-----~lw~~~~~~~~ 520 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-----------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE-----KLWEAPTGTGV 520 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-----------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC-----EEEEEECSSCC
T ss_pred cEEEEEeCCCCcEEeecCC-----------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc-----eeeeeeCCCCc
Confidence 8899999999998877641 1224455678889899999999999999999983 444443 3444
Q ss_pred CeeEEEEecCCCCEEEE
Q 000080 2320 HAMDVSYITSSGSVIAA 2336 (2389)
Q Consensus 2320 ~V~sVAFSP~DGslLAS 2336 (2389)
...-+.|.+ +|+.++.
T Consensus 521 ~~~p~~y~~-~G~~~v~ 536 (677)
T 1kb0_A 521 VAAPSTYMV-DGRQYVS 536 (677)
T ss_dssp CSCCEEEEE-TTEEEEE
T ss_pred ccCCEEEEe-CCEEEEE
Confidence 445678887 7765443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.45 Score=53.74 Aligned_cols=113 Identities=9% Similarity=0.030 Sum_probs=75.9
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
.++...++|.+++ |+.|+.|..+|.. |+.+..+.. +...+.++.+.++|+.++++ +.|..+| .+
T Consensus 140 ~~~~~~~~g~l~v-gt~~~~l~~~d~~-g~~~~~~~~----------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~ 203 (330)
T 3hxj_A 140 ATPIVSEDGTIYV-GSNDNYLYAINPD-GTEKWRFKT----------NDAITSAASIGKDGTIYFGS---DKVYAIN-PD 203 (330)
T ss_dssp SCCEECTTSCEEE-ECTTSEEEEECTT-SCEEEEEEC----------SSCCCSCCEECTTCCEEEES---SSEEEEC-TT
T ss_pred eeeEEcCCCEEEE-EcCCCEEEEECCC-CCEeEEEec----------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CC
Confidence 3446777887555 6788999999987 887766641 12457778888999877655 8899999 65
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC 2364 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G 2364 (2389)
+. ...........+.+++..+ +|.+.+.+ .++.|..+|. +++.+..+..
T Consensus 204 g~-----~~~~~~~~~~~~~~~~~~~-~g~l~v~t----~~~gl~~~~~---~g~~~~~~~~ 252 (330)
T 3hxj_A 204 GT-----EKWNFYAGYWTVTRPAISE-DGTIYVTS----LDGHLYAINP---DGTEKWRFKT 252 (330)
T ss_dssp SC-----EEEEECCSSCCCSCCEECT-TSCEEEEE----TTTEEEEECT---TSCEEEEEEC
T ss_pred Cc-----EEEEEccCCcceeceEECC-CCeEEEEc----CCCeEEEECC---CCCEeEEeeC
Confidence 52 3333333446677888888 78877753 5666777773 4555554443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.1 Score=67.89 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=56.6
Q ss_pred CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeee-cC
Q 000080 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC-FS 2318 (2389)
Q Consensus 2240 DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~g-Hs 2318 (2389)
+|+|+.||..+|+.+-.+.. + ..+..-.++..|..+..|+.||+++.||.++| +.+.++.. +.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~---~--------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG-----~~lw~~~~~~~ 517 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPY---V--------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTG-----EKLWEQPAASG 517 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEE---S--------SSCCCCEEEETTTEEEEECTTSEEEEEETTTC-----CEEEEEECSSC
T ss_pred ceeEEEEECCCCCeEeEccC---C--------CCccCccceECCCEEEEECCCCcEEEEECCCC-----ccceeeeCCCC
Confidence 58999999999998877641 1 11233467778889999999999999999998 34555443 33
Q ss_pred CCeeEEEEecCCCCEEE
Q 000080 2319 SHAMDVSYITSSGSVIA 2335 (2389)
Q Consensus 2319 ~~V~sVAFSP~DGslLA 2335 (2389)
....-++|.. ||+..+
T Consensus 518 ~~~~p~ty~~-~G~qyv 533 (689)
T 1yiq_A 518 VMAAPVTYSV-DGEQYV 533 (689)
T ss_dssp CCSCCEEEEE-TTEEEE
T ss_pred cccCceEEEE-CCEEEE
Confidence 3345588888 777444
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.17 Score=61.58 Aligned_cols=86 Identities=5% Similarity=-0.123 Sum_probs=60.3
Q ss_pred EEEcCCCCeEEEEeC---------CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC-EEEEEe-CCC
Q 000080 2225 FSSHPLRPFFLVGSS---------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAA-LDG 2293 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~---------DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~-~LASgS-~Dg 2293 (2389)
++|+|||+.+..+.. +..+.++|+.+++.+.++.+ | ...+.|+|+|||+ .+++.. .++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---------g--~~p~gi~~s~Dg~~l~va~~~~~~ 337 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---------G--HDSDAIIAAQDGASDNYANSAGTE 337 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---------E--EEECEEEECCSSSCEEEEEETTTT
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---------C--CCcceEEECCCCCEEEEEccCCCC
Confidence 689999997665432 23456999999998887642 1 2479999999997 566666 599
Q ss_pred cEEEeeCCCCCccCcccceeeeecCCCeeEEEEe
Q 000080 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI 2327 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFS 2327 (2389)
+|.++|++++ +.+.++.-.. ....+++.
T Consensus 338 ~VsVID~~t~-----kvv~~I~vg~-~P~~i~~~ 365 (368)
T 1mda_H 338 VLDIYDAASD-----QDQSSVELDK-GPESLSVQ 365 (368)
T ss_dssp EEEEEESSSC-----EEEEECCCCS-CCCEEECC
T ss_pred eEEEEECCCC-----cEEEEEECCC-CCCEEEee
Confidence 9999999986 3555554332 23345444
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.75 Score=54.29 Aligned_cols=116 Identities=9% Similarity=0.065 Sum_probs=76.6
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
+..+.|+ ++.++.|.+.+|.|+..|+.+|+.+++. +++. ..--.+++.. ++.+...-.++++.++|.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~--------~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN--------IFAEGLASDG-ERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT--------CCEEEEEECS-SCEEEEESSSCEEEEEETT
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC--------cceeEEEEeC-CEEEEEEccCCEEEEEECC
Confidence 4677898 4788999999999999999999987776 3322 2223455542 3566666678999999999
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
+. +.+.++.- ...-+.++ + ||+.|..+ ..+++|.++|+ .+.+.+.+++
T Consensus 125 Tl-----~~~~ti~~-~~eGwGLt--~-Dg~~L~vS---dGs~~l~~iDp--~T~~v~~~I~ 172 (268)
T 3nok_A 125 PP-----QRERTTRY-SGEGWGLC--Y-WNGKLVRS---DGGTMLTFHEP--DGFALVGAVQ 172 (268)
T ss_dssp TT-----EEEEEEEC-SSCCCCEE--E-ETTEEEEE---CSSSEEEEECT--TTCCEEEEEE
T ss_pred cC-----cEEEEEeC-CCceeEEe--c-CCCEEEEE---CCCCEEEEEcC--CCCeEEEEEE
Confidence 86 34444432 23334455 4 45655553 23678999997 4555555543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.97 Score=53.02 Aligned_cols=136 Identities=6% Similarity=-0.071 Sum_probs=93.6
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCC
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGG 2304 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tgg 2304 (2389)
++++. ++++++.-.+++|.++|..+.+.+.++.. + + ++ + ..++|||+++..+..+++|.+.|.++..
T Consensus 71 i~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~-g---~---~~-g----~glt~Dg~~l~vs~gs~~l~viD~~t~~ 137 (266)
T 2iwa_A 71 LTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTH-Q---M---KD-G----WGLATDGKILYGSDGTSILYEIDPHTFK 137 (266)
T ss_dssp EEEET-TEEEEEETTCSEEEEEETTTTEEEEEEEC-C---S---SS-C----CEEEECSSSEEEECSSSEEEEECTTTCC
T ss_pred EEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEEC-C---C---CC-e----EEEEECCCEEEEECCCCeEEEEECCCCc
Confidence 45552 34556666889999999999999888741 1 0 11 2 3377899888888889999999998852
Q ss_pred ccCcccceeee-e----cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec-------------
Q 000080 2305 RSNVRPMESCL-C----FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE------------- 2366 (2389)
Q Consensus 2305 rs~~k~l~tl~-g----Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~------------- 2366 (2389)
...+.. + .-...+.+.|. +|++.|+. ..+++|.+=|+ .+++.+..+.-..
T Consensus 138 -----v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~---~~~~~V~vID~--~tg~V~~~I~~~g~~~~~~~~~~~~~ 205 (266)
T 2iwa_A 138 -----LIKKHNVKYNGHRVIRLNELEYI--NGEVWANI---WQTDCIARISA--KDGTLLGWILLPNLRKKLIDEGFRDI 205 (266)
T ss_dssp -----EEEEEECEETTEECCCEEEEEEE--TTEEEEEE---TTSSEEEEEET--TTCCEEEEEECHHHHHHHHHTTCTTC
T ss_pred -----EEEEEEECCCCcccccceeEEEE--CCEEEEec---CCCCeEEEEEC--CCCcEEEEEECCCccccccccccccc
Confidence 233322 1 11246788888 57777764 35678999997 5778888886320
Q ss_pred CcEEEEeecccchhhhccc
Q 000080 2367 GLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2367 ~~V~svA~~~~~~~~~s~~ 2385 (2389)
.....+|++++|++++--+
T Consensus 206 ~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 206 DVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp CCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEC
Confidence 3457999999998876443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=1.1 Score=51.70 Aligned_cols=134 Identities=8% Similarity=0.033 Sum_probs=81.2
Q ss_pred EEEEEEcC-CCCeEEEEeC-----------------CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC
Q 000080 2222 TRAFSSHP-LRPFFLVGSS-----------------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG 2283 (2389)
Q Consensus 2222 VrsVAFsP-dG~~LASGS~-----------------DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG 2283 (2389)
...|++.| +|.++++-.. ++.|..+|..+++.......+ ..-..|+|+|||
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-----------~~p~gia~~~dg 196 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL-----------HVPGGAEVSADS 196 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE-----------SCCCEEEECTTS
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC-----------ccCcceEECCCC
Confidence 36789999 9998887543 477899998767643322111 223679999999
Q ss_pred CEE-EEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecC-------CCCCeEEEeeCCCCC
Q 000080 2284 HRF-ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS-------SNGINVVVWDTLAPP 2355 (2389)
Q Consensus 2284 ~~L-ASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~s-------S~D~TVrLWD~l~~t 2355 (2389)
++| ++-+.++.|..+++.... ......+....+ ...+++.+ +|++.++.... +..+.|..+|. .
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~---~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~---~ 268 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPK---KGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDE---F 268 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTT---TTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECT---T
T ss_pred CEEEEEeCCCCeEEEEECCCCc---CCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEECC---C
Confidence 855 454667899999987531 011112111223 67899999 89988764210 01245666663 4
Q ss_pred CCceEEEEeec----CcEEEEee
Q 000080 2356 TSSRASITCHE----GLYDLFLP 2374 (2389)
Q Consensus 2356 g~~v~sL~GH~----~~V~svA~ 2374 (2389)
++.+..+.... ..+++++.
T Consensus 269 G~~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 269 GNILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp SCEEEEEECCTTTTTSCCCEEEE
T ss_pred CCEEEEEECCCCCccccceEEEE
Confidence 66566665442 23555554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=93.33 E-value=0.12 Score=66.61 Aligned_cols=117 Identities=13% Similarity=0.086 Sum_probs=78.3
Q ss_pred EEEEEcCCCCe-EEEEeCCCcEEEeecCCCc------------eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q 000080 2223 RAFSSHPLRPF-FLVGSSNTHIYLWEFGKDK------------ATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2389)
Q Consensus 2223 rsVAFsPdG~~-LASGS~DgTIRLWDl~tGk------------~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASg 2289 (2389)
..+.|+|||++ ++++-.+.+|.++|+.+.+ .+... +.| ..-+.++|+|||+...+.
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v---------~vG--~gP~h~aF~~dG~aY~t~ 348 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP---------ELG--LGPLHTAFDGRGNAYTSL 348 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC---------BCC--SCEEEEEECTTSEEEEEE
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc---------CCC--CCcceEEECCCCeEEEEE
Confidence 55799999996 5556689999999998543 12221 122 346999999999778889
Q ss_pred eCCCcEEEeeCCCCC-----ccCcccceeeee-----cCCCeeEEEEecCCCCEEEEeecCCCCCe----------EEEe
Q 000080 2290 ALDGTVCTWQLEVGG-----RSNVRPMESCLC-----FSSHAMDVSYITSSGSVIAAAGHSSNGIN----------VVVW 2349 (2389)
Q Consensus 2290 S~DgTVkLWDl~tgg-----rs~~k~l~tl~g-----Hs~~V~sVAFSP~DGslLASAG~sS~D~T----------VrLW 2349 (2389)
-.|++|..||++++. ....+.+.++.- |.....+++++| ||++|.++--.|.|+- -+|.
T Consensus 349 ~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~ 427 (595)
T 1fwx_A 349 FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLI 427 (595)
T ss_dssp TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEE
T ss_pred ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEE
Confidence 999999999998620 000123344333 322223456788 9999987644455663 2888
Q ss_pred eC
Q 000080 2350 DT 2351 (2389)
Q Consensus 2350 D~ 2351 (2389)
|+
T Consensus 428 di 429 (595)
T 1fwx_A 428 DI 429 (595)
T ss_dssp EC
T ss_pred Ec
Confidence 97
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=92.47 E-value=0.38 Score=61.75 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=74.5
Q ss_pred EEEEcC-CCCeEEEEeCCC-----------cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-
Q 000080 2224 AFSSHP-LRPFFLVGSSNT-----------HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA- 2290 (2389)
Q Consensus 2224 sVAFsP-dG~~LASGS~Dg-----------TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS- 2290 (2389)
++++.| +|++++.|+.+. .+.+||..+++-...- ..+. .+.....++++.+||+.++.|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~~~------~~~~~~~~~~~~~~g~lyv~GG~ 262 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VTVT------KHDMFCPGISMDGNGQIVVTGGN 262 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EEEC------SCCCSSCEEEECTTSCEEEECSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc-ccCC------CCCCccccccCCCCCCEEEeCCC
Confidence 557888 999999998654 6899999888632211 1111 1223456788999999999999
Q ss_pred CCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCC---CCCeEEEeeC
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS---NGINVVVWDT 2351 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS---~D~TVrLWD~ 2351 (2389)
.++++.+||..+..= ..+..+. ....--+++..+ +|++++.||... .-+++.+||.
T Consensus 263 ~~~~v~~yd~~t~~W---~~~~~~~-~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 263 DAKKTSLYDSSSDSW---IPGPDMQ-VARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp STTCEEEEEGGGTEE---EECCCCS-SCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CCCceEEecCcCCce---eECCCCC-ccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 456899999987410 1111111 111112466777 899999987211 1167999997
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=92.39 E-value=1 Score=50.75 Aligned_cols=130 Identities=7% Similarity=-0.025 Sum_probs=84.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
.++.+.++|.+++.. +.|..+| .+|+.+..+.. ....+.++++.++|+..+ ++.++.|..+|. +
T Consensus 180 ~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~----------~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~ 243 (330)
T 3hxj_A 180 SAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYA----------GYWTVTRPAISEDGTIYV-TSLDGHLYAINP-D 243 (330)
T ss_dssp SCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECC----------SSCCCSCCEECTTSCEEE-EETTTEEEEECT-T
T ss_pred eeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEcc----------CCcceeceEECCCCeEEE-EcCCCeEEEECC-C
Confidence 445778888877654 7899999 78887666531 125588889999987655 555677777774 3
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhh
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~ 2381 (2389)
+ +.+.........+.++++.+ +|.+.+. +.++.|..+|. +++.+..+.-....+.++...++|+..
T Consensus 244 g-----~~~~~~~~~~~~~~~~~~~~-~g~l~v~----t~~ggl~~~d~---~g~~~~~~~~~~~~~~~~~~d~~g~l~ 309 (330)
T 3hxj_A 244 G-----TEKWRFKTGKRIESSPVIGN-TDTIYFG----SYDGHLYAINP---DGTEKWNFETGSWIIATPVIDENGTIY 309 (330)
T ss_dssp S-----CEEEEEECSSCCCSCCEECT-TSCEEEE----CTTCEEEEECT---TSCEEEEEECSSCCCSCCEECTTCCEE
T ss_pred C-----CEeEEeeCCCCccccceEcC-CCeEEEe----cCCCCEEEECC---CCcEEEEEEcCCccccceEEcCCCEEE
Confidence 3 23334433344445566666 7777664 46778888884 566666665555556677776666543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.27 E-value=1.9 Score=52.93 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=80.8
Q ss_pred EEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCc---EEE
Q 000080 2223 RAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGT---VCT 2297 (2389)
Q Consensus 2223 rsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgT---VkL 2297 (2389)
..|+++| ++..|..+...+.|+.+|..+++. .++. + ....-..|+|+|+|++|..+.. ++. .-+
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~~~~--~--------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-STVY--S--------GLSKVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-EEEE--C--------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-EEEe--c--------CCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 5679998 344444434448999999866554 3432 1 1245799999999995554443 332 233
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee--cCcEEEEeec
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--EGLYDLFLPL 2375 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH--~~~V~svA~~ 2375 (2389)
|-...++ ......+.. -....++++.|.+|.++++- ..++.|..+|. .+..+..+... ...-+.++++
T Consensus 209 ~~~~~g~---~~~~~~l~~-~~~p~giavdp~~g~lyv~d---~~~~~V~~~~~---~~~~~~~~~~~~~~~~P~gia~~ 278 (430)
T 3tc9_A 209 ILTRESG---FKVITELTK-GQNCNGAETHPINGELYFNS---WNAGQVFRYDF---TTQETTPLFTIQDSGWEFHIQFH 278 (430)
T ss_dssp EEEGGGT---SCSEEEEEE-CSSCCCEEECTTTCCEEEEE---TTTTEEEEEET---TTTEEEEEEECSSSSCCEEEEEC
T ss_pred EEeCCCc---eeeeeeecc-CCCceEEEEeCCCCEEEEEE---CCCCEEEEEEC---CCCcEEEEEEcCCCCcceeEEEc
Confidence 3333331 111123332 24456799999778887763 35678888886 23333222211 1345689999
Q ss_pred ccchhh
Q 000080 2376 KLLNFA 2381 (2389)
Q Consensus 2376 ~~~~~~ 2381 (2389)
|+|+++
T Consensus 279 pdG~~l 284 (430)
T 3tc9_A 279 PSGNYA 284 (430)
T ss_dssp TTSSEE
T ss_pred CCCCEE
Confidence 999853
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=91.80 E-value=2.8 Score=46.87 Aligned_cols=137 Identities=11% Similarity=-0.000 Sum_probs=83.0
Q ss_pred EEEEEcCCCC-eEEEEeC--CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC-EEEEEeCCCcEEEe
Q 000080 2223 RAFSSHPLRP-FFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTW 2298 (2389)
Q Consensus 2223 rsVAFsPdG~-~LASGS~--DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~-~LASgS~DgTVkLW 2298 (2389)
+.++++|++. ++++... .+.|+.+++. |+....+.. . ....-..++++|+|+ .+++-...++|...
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~--~-------~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQ--D-------NLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEEC--T-------TCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEE--C-------CCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 7889999654 5555433 4789888874 554444320 1 124568999999875 45666677899999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec-CcEEEEeeccc
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-GLYDLFLPLKL 2377 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~-~~V~svA~~~~ 2377 (2389)
|+.... ......+ ......++.. +|.++++. ..++.|...|. .+++.++.+.-.. .....++..|+
T Consensus 195 ~~~g~~-----~~~~~~~-~~~P~gi~~d--~~~lyva~---~~~~~v~~~d~--~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 195 NPAQPG-----RRKVLEG-LQYPFAVTSY--GKNLYYTD---WKTNSVIAMDL--AISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp ETTEEE-----EEEEEEC-CCSEEEEEEE--TTEEEEEE---TTTTEEEEEET--TTTEEEEEECCSSCCCCCCEEEECS
T ss_pred ecCCCc-----eEEEecC-CCCceEEEEe--CCEEEEEE---CCCCeEEEEeC--CCCCceEEEccccccccceeeecCc
Confidence 997531 1111222 2334567654 45566553 35678999996 4566677774322 24567778887
Q ss_pred chhhh
Q 000080 2378 LNFAL 2382 (2389)
Q Consensus 2378 ~~~~~ 2382 (2389)
+...+
T Consensus 262 ~~~~~ 266 (267)
T 1npe_A 262 QCPQG 266 (267)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 76543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=91.76 E-value=2.6 Score=48.53 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=69.5
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc--EEEeeC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT--VCTWQL 2300 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT--VkLWDl 2300 (2389)
..++++|+|+++++-..++.|..||.. ++....+. . + .....|+|+|||+.+++....+. |..+|.
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~-g~~~~~~~-~-------~---~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT-V-------E---GKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEE-C-------S---SEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCC-CceEEEEe-C-------C---CCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 667999999998888889999999975 44443332 1 1 34889999999997776654434 555566
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
.++. ...+.... .......++..+ ++..+++- +.++.|...|.
T Consensus 103 ~~g~---~~~~~~~~-~~~~~~g~~~~~-~~~~~v~d---~~~g~i~~~d~ 145 (306)
T 2p4o_A 103 SDGT---VETLLTLP-DAIFLNGITPLS-DTQYLTAD---SYRGAIWLIDV 145 (306)
T ss_dssp TTSC---EEEEEECT-TCSCEEEEEESS-SSEEEEEE---TTTTEEEEEET
T ss_pred CCCe---EEEEEeCC-CccccCcccccC-CCcEEEEE---CCCCeEEEEeC
Confidence 6652 12222221 123345666666 56666653 35677777775
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=90.35 E-value=4.3 Score=47.25 Aligned_cols=117 Identities=6% Similarity=0.006 Sum_probs=73.4
Q ss_pred EEEEEEcCCCCeEEEEeCCC--cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~Dg--TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
+-.+.|++ +.++.|.+.+| .|+..|+.+|+.+++.. ++++ ..--.+++. +++.+...-.++++.++|
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~--------~fgeGi~~~-~~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPP--------YFGAGIVAW-RDRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTT--------CCEEEEEEE-TTEEEEEESSSSEEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCC--------cceeEEEEe-CCEEEEEEeeCCEEEEEE
Confidence 35668997 77888888764 99999999999888764 2222 112333443 235555566789999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
.++. +.+.++. ....-+.++ ++.+++++|- .+++|.++|. .+.+.+.+++
T Consensus 92 ~~tl-----~~~~ti~-~~~~Gwglt--~dg~~L~vSd----gs~~l~~iDp--~t~~~~~~I~ 141 (243)
T 3mbr_X 92 LATL-----TPRARFR-YPGEGWALT--SDDSHLYMSD----GTAVIRKLDP--DTLQQVGSIK 141 (243)
T ss_dssp TTTT-----EEEEEEE-CSSCCCEEE--ECSSCEEEEC----SSSEEEEECT--TTCCEEEEEE
T ss_pred CCcC-----cEEEEEe-CCCCceEEe--eCCCEEEEEC----CCCeEEEEeC--CCCeEEEEEE
Confidence 9986 3444443 223334454 5234555553 3578999997 3444455543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=90.33 E-value=1.5 Score=51.57 Aligned_cols=129 Identities=9% Similarity=0.049 Sum_probs=88.3
Q ss_pred CeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccc
Q 000080 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2389)
Q Consensus 2232 ~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l 2311 (2389)
++++..-.++++.++|..+.+.+.++.. +++ + ..+++||++|.....+++|.++|.++.. ..
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~-~~e--------G----~glt~dg~~L~~SdGs~~i~~iDp~T~~-----v~ 159 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVRSFNY-DGE--------G----WGLTHNDQYLIMSDGTPVLRFLDPESLT-----PV 159 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEEC-SSC--------C----CCEEECSSCEEECCSSSEEEEECTTTCS-----EE
T ss_pred EEEEEEeeCCEEEEEECccCcEEEEEEC-CCC--------c----eEEecCCCEEEEECCCCeEEEEcCCCCe-----EE
Confidence 3444445799999999999999998852 111 2 2345789888888888999999999862 22
Q ss_pred eeee----ecC-CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee------------cCcEEEEee
Q 000080 2312 ESCL----CFS-SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH------------EGLYDLFLP 2374 (2389)
Q Consensus 2312 ~tl~----gHs-~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH------------~~~V~svA~ 2374 (2389)
.+.. +.. ..++.+.|. +|++.|.. -.+++|.+-|. .+++.+..+.-. .+--+.||+
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~--~G~lyan~---w~~~~I~vIDp--~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~ 232 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWV--DGEIFANV---WQTNKIVRIDP--ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW 232 (262)
T ss_dssp EEEECEETTEECCCEEEEEEE--TTEEEEEE---TTSSEEEEECT--TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE
T ss_pred EEEEeccCCccccccceeEEE--CCEEEEEE---ccCCeEEEEEC--CCCcEEEEEECCcCccccccccCcCCceEEEEE
Confidence 2221 111 445677886 68888764 35778999997 577777777642 123478999
Q ss_pred cccchhhhccc
Q 000080 2375 LKLLNFALSKC 2385 (2389)
Q Consensus 2375 ~~~~~~~~s~~ 2385 (2389)
+|++++.+--|
T Consensus 233 dp~~~~lfVTG 243 (262)
T 3nol_A 233 DKEHHRLFVTG 243 (262)
T ss_dssp ETTTTEEEEEE
T ss_pred cCCCCEEEEEC
Confidence 99988765433
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=89.86 E-value=2.9 Score=51.50 Aligned_cols=137 Identities=9% Similarity=0.025 Sum_probs=79.6
Q ss_pred EEEEEcCC---CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC---CcEE
Q 000080 2223 RAFSSHPL---RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVC 2296 (2389)
Q Consensus 2223 rsVAFsPd---G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D---gTVk 2296 (2389)
..|+++|+ |.++++-.. +.|+.+|..+|+...... .......|+|+|+|+.+++-... ..-.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~-----------~~~~P~giavd~dG~lyVad~~~~~~~~gv 209 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT-----------NIGQCADVNFTLNGDMVVVDDQSSDTNTGI 209 (433)
T ss_dssp CEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECC-----------CCSCEEEEEECTTCCEEEEECCSCTTSEEE
T ss_pred ceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeec-----------CCCCccEEEECCCCCEEEEcCCCCcccceE
Confidence 56799995 666665444 899999997776543321 12458999999999966655422 1211
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee--cCcEEEEee
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--EGLYDLFLP 2374 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH--~~~V~svA~ 2374 (2389)
++-...++. .....+. .-....++++.|.+|.+.++- ..++.|+.+|. .++.....+... ...-..+|+
T Consensus 210 ~~~~~~~~~---~~~~~~~-~~~~P~giavd~~~G~lyv~d---~~~~~V~~~d~--~~g~~~~~~~~~~~~~~~~~ia~ 280 (433)
T 4hw6_A 210 YLFTRASGF---TERLSLC-NARGAKTCAVHPQNGKIYYTR---YHHAMISSYDP--ATGTLTEEEVMMDTKGSNFHIVW 280 (433)
T ss_dssp EEECGGGTT---CCEEEEE-ECSSBCCCEECTTTCCEEECB---TTCSEEEEECT--TTCCEEEEEEECSCCSSCEEEEE
T ss_pred EEEECCCCe---ecccccc-ccCCCCEEEEeCCCCeEEEEE---CCCCEEEEEEC--CCCeEEEEEeccCCCCCcccEEE
Confidence 221122210 1011222 234456789998678877652 46678888886 234432333221 122346999
Q ss_pred cccchh
Q 000080 2375 LKLLNF 2380 (2389)
Q Consensus 2375 ~~~~~~ 2380 (2389)
+|+|++
T Consensus 281 dpdG~~ 286 (433)
T 4hw6_A 281 HPTGDW 286 (433)
T ss_dssp CTTSSE
T ss_pred eCCCCE
Confidence 999984
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=89.38 E-value=3.2 Score=49.09 Aligned_cols=131 Identities=6% Similarity=-0.004 Sum_probs=89.5
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCC
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGG 2304 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tgg 2304 (2389)
+++.. +++++..-.++.+.++|..+.+.+.++.. ++ + + + .+++||++|..+..+++|.++|.++..
T Consensus 101 it~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-~~-------e-G--w--GLt~Dg~~L~vSdGs~~l~~iDp~T~~ 166 (268)
T 3nok_A 101 LASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRY-SG-------E-G--W--GLCYWNGKLVRSDGGTMLTFHEPDGFA 166 (268)
T ss_dssp EEECS-SCEEEEESSSCEEEEEETTTTEEEEEEEC-SS-------C-C--C--CEEEETTEEEEECSSSEEEEECTTTCC
T ss_pred EEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeC-CC-------c-e--e--EEecCCCEEEEECCCCEEEEEcCCCCe
Confidence 44543 34555556899999999999999999852 11 1 2 2 344789998888889999999999862
Q ss_pred ccCcccceeee--ecC---CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee------------c-
Q 000080 2305 RSNVRPMESCL--CFS---SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH------------E- 2366 (2389)
Q Consensus 2305 rs~~k~l~tl~--gHs---~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH------------~- 2366 (2389)
.+.+.. .+. ..++.+.|. +|++.|.. -.+++|.+=|. .+++.+..+.-. .
T Consensus 167 -----v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanv---w~s~~I~vIDp--~TG~V~~~Idl~~L~~~~~~~~~~~~ 234 (268)
T 3nok_A 167 -----LVGAVQVKLRGQPVELINELECA--NGVIYANI---WHSSDVLEIDP--ATGTVVGVIDASALTRAVAGQVTNPE 234 (268)
T ss_dssp -----EEEEEECEETTEECCCEEEEEEE--TTEEEEEE---TTCSEEEEECT--TTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred -----EEEEEEeCCCCcccccccccEEe--CCEEEEEE---CCCCeEEEEeC--CCCcEEEEEECCCCcccccccccCcC
Confidence 222221 122 245677777 68887764 35678888897 577777777643 1
Q ss_pred CcEEEEeecccchhh
Q 000080 2367 GLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2367 ~~V~svA~~~~~~~~ 2381 (2389)
+--+.||.+|++++.
T Consensus 235 ~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 235 AVLNGIAVEPGSGRI 249 (268)
T ss_dssp CCEEEEEECTTTCCE
T ss_pred CceEEEEEcCCCCEE
Confidence 234689999987754
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=88.89 E-value=22 Score=41.62 Aligned_cols=148 Identities=9% Similarity=0.161 Sum_probs=82.5
Q ss_pred CeeEEEEcCCCCCCCcEEE-ecCCeEEEEeeCCCCCCCCccceeeEEecccceEEEEeecCCCCeEEEEecc-eEEee-c
Q 000080 96 PVTSISWSPETPSIGQLAA-ASENCIFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGME-TVLWK-K 172 (2389)
Q Consensus 96 dVk~VaWSPd~~~~GeIaA-SyDntIRVw~~d~~~~kgd~~W~~~~tL~hssTV~sIAWSpdG~rLaSggdD-V~IW~-~ 172 (2389)
.+..+++.|+ +.+++ +.++.|..- .| .+.-.|.... ......+.+++++++|+.++.+.+. +.++. .
T Consensus 164 ~~~~~~~~~~----~~~~~~g~~G~~~~S-~d----~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D 233 (327)
T 2xbg_A 164 VMRNLNRSPS----GEYVAVSSRGSFYST-WE----PGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD 233 (327)
T ss_dssp CEEEEEECTT----SCEEEEETTSSEEEE-EC----TTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTTEEEEEETT
T ss_pred ceEEEEEcCC----CcEEEEECCCcEEEE-eC----CCCCceeECC-CCCCCccceeEECCCCCEEEEeCCceEEEecCC
Confidence 5889999995 55554 444443222 12 1123687753 2345688999999999776655444 33442 2
Q ss_pred cCCcEEEEEEeec--cccceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeec--ccCCCCeeE
Q 000080 173 KNTLWEIAWKFKE--NYPQNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLE--LCHPQPVSM 247 (2389)
Q Consensus 173 ~~s~Wecvwt~~~--~~~~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve--~aH~qdVn~ 247 (2389)
....|+.+- .+ .....++++++.+++. +|.+. ... ++.- .|+........ ..++.+++.
T Consensus 234 ~G~tW~~~~--~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~------------i~~S-~DgG~tW~~~~~~~~~~~~~~~ 297 (327)
T 2xbg_A 234 NSENWGELL--SPLRRNSVGFLDLAYRTPNEVWLAGG-AGA------------LLCS-QDGGQTWQQDVDVKKVPSNFYK 297 (327)
T ss_dssp EEEEECCCB--CTTSSCCSCEEEEEESSSSCEEEEES-TTC------------EEEE-SSTTSSCEECGGGTTSSSCCCE
T ss_pred CCCeeEecc--CCcccCCcceEEEEecCCCEEEEEeC-CCe------------EEEe-CCCCcccEEcCccCCCCCCeEE
Confidence 234565431 11 1223578888999888 55433 221 2211 13222233333 235688999
Q ss_pred EEeccCCCCCCCCCCccccCceEEeeecCCeEEEEE
Q 000080 248 VQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWC 283 (2389)
Q Consensus 248 V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~ 283 (2389)
|.+.+ .+.++.++.||+|.-++
T Consensus 298 v~~~~--------------~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 298 ILFFS--------------PDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEE--------------TTEEEEECSTTEEEEEC
T ss_pred EEEEC--------------CCceEEEcCCceEEEEc
Confidence 99975 12366777899765443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=88.73 E-value=5.9 Score=48.86 Aligned_cols=125 Identities=6% Similarity=-0.039 Sum_probs=78.2
Q ss_pred EEEEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC-EEEEEeCCCcEEEeeC
Q 000080 2223 RAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2223 rsVAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~-~LASgS~DgTVkLWDl 2300 (2389)
..++++| +|.++++-..++.|+.+|..+|+...++... + ....-..|+|+|+|+ .+++-...+.|+.++.
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~-------~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~ 302 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-D-------TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDY 302 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-S-------CCSSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-C-------CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence 4469999 8888888778899999999878763333111 1 112335799999998 5666667789999876
Q ss_pred CCCCccCcccceeeeec---------------CCCeeEEEE---------ecCCCCEEEEeecCCCCCeEEEeeCCCCCC
Q 000080 2301 EVGGRSNVRPMESCLCF---------------SSHAMDVSY---------ITSSGSVIAAAGHSSNGINVVVWDTLAPPT 2356 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gH---------------s~~V~sVAF---------SP~DGslLASAG~sS~D~TVrLWD~l~~tg 2356 (2389)
..... .......+.+. -..-..++| .+ +|.+.++- +..+.|+..|. .+
T Consensus 303 d~~~~-~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD---~~n~~I~~~~~---~G 374 (433)
T 4hw6_A 303 NRETG-KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCD---RDSHTVRVLTP---EG 374 (433)
T ss_dssp CTTTC-CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEE---TTTTEEEEECT---TS
T ss_pred CCCCc-ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEE---CCCCEEEEECC---CC
Confidence 52110 00111222221 123567999 55 77877763 56788998883 34
Q ss_pred CceEEEEe
Q 000080 2357 SSRASITC 2364 (2389)
Q Consensus 2357 ~~v~sL~G 2364 (2389)
.+.++.|
T Consensus 375 -~v~t~~G 381 (433)
T 4hw6_A 375 -RVTTYAG 381 (433)
T ss_dssp -EEEEEEC
T ss_pred -CEEEEEe
Confidence 4555554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=2.7 Score=50.35 Aligned_cols=107 Identities=10% Similarity=0.119 Sum_probs=63.8
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC----CCEEEEEeC---C---
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAAL---D--- 2292 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD----G~~LASgS~---D--- 2292 (2389)
+.++|.|||+++++ ..++.|+++| .+|+ ..+..++-. ..-......|+|+|| |..+++-+. +
T Consensus 32 ~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~v~----~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 32 WSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFDVA----NVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp EEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECCCC----CSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred eEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeecccee----ecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 78899999997776 4569999998 4665 222211100 001245899999998 666666543 3
Q ss_pred -CcEEEeeCCCCC-c-cCccccee-eee-cCCCeeEEEEecCCCCEEEEee
Q 000080 2293 -GTVCTWQLEVGG-R-SNVRPMES-CLC-FSSHAMDVSYITSSGSVIAAAG 2338 (2389)
Q Consensus 2293 -gTVkLWDl~tgg-r-s~~k~l~t-l~g-Hs~~V~sVAFSP~DGslLASAG 2338 (2389)
+.|..++...+. . ...+.+.. +.. .......++|.| ||.+.++.|
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G 153 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG 153 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence 567777765421 0 00112211 221 112346799999 999998865
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=88.50 E-value=2.7 Score=53.66 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=78.8
Q ss_pred EEcCCCC---eEEEEeCCCcEEEeecCCCceeeEecccCCCC----------CC--------------------CCCCCC
Q 000080 2226 SSHPLRP---FFLVGSSNTHIYLWEFGKDKATATYGVLPAAN----------VP--------------------PPYALA 2272 (2389)
Q Consensus 2226 AFsPdG~---~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~----------~p--------------------~~GH~~ 2272 (2389)
...++|+ .++.++.+|.++..|..+|+.+..+..-+..+ .| ..|..+
T Consensus 308 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~ 387 (571)
T 2ad6_A 308 DQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHN 387 (571)
T ss_dssp EEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSC
T ss_pred ecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccC
Confidence 3346884 67889999999999999999876654211000 00 001111
Q ss_pred CEEEEEECCCCCEEEEEe-------------------------------------CCCcEEEeeCCCCCccCcccceeee
Q 000080 2273 SISALQFDHYGHRFASAA-------------------------------------LDGTVCTWQLEVGGRSNVRPMESCL 2315 (2389)
Q Consensus 2273 ~V~sVaFSPDG~~LASgS-------------------------------------~DgTVkLWDl~tggrs~~k~l~tl~ 2315 (2389)
+ ..++|+|++.++...+ .+|.|..||+++|. ...+..
T Consensus 388 w-~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~-----~~W~~~ 461 (571)
T 2ad6_A 388 Q-GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK-----AKWTKW 461 (571)
T ss_dssp S-CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC-----EEEEEE
T ss_pred C-CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC-----EEEEec
Confidence 1 3578999987776653 35889999999873 333332
Q ss_pred ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe
Q 000080 2316 CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC 2364 (2389)
Q Consensus 2316 gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G 2364 (2389)
+...+.+..+.. .|.++..+ +.|++|+.+|. .+++.+.++.-
T Consensus 462 -~~~~~~~~~~~t-~gg~v~~g---~~dg~l~a~D~--~tG~~lw~~~~ 503 (571)
T 2ad6_A 462 -EKFAAWGGTLYT-KGGLVWYA---TLDGYLKALDN--KDGKELWNFKM 503 (571)
T ss_dssp -ESSCCCSBCEEE-TTTEEEEE---CTTSEEEEEET--TTCCEEEEEEC
T ss_pred -CCCCccceeEEE-CCCEEEEE---cCCCeEEEEEC--CCCCEEEEEeC
Confidence 222333334444 34555554 58999999997 57888887763
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=87.96 E-value=2.1 Score=55.49 Aligned_cols=154 Identities=9% Similarity=0.031 Sum_probs=88.7
Q ss_pred eccccccccccccccCCCC-cCc---eeEEEEEEcCCCC---eEEEEeCCCcEEEeecCCCceeeEecccC---------
Q 000080 2198 ALGWETQDDFEDYVDPPAT-VEN---ISTRAFSSHPLRP---FFLVGSSNTHIYLWEFGKDKATATYGVLP--------- 2261 (2389)
Q Consensus 2198 g~~~d~~~~~~~~~d~~at-v~n---i~VrsVAFsPdG~---~LASGS~DgTIRLWDl~tGk~l~Tl~vl~--------- 2261 (2389)
.+.-++-+.+|.+...... .+. .+.....+..+|+ .++.++.||.++++|..+|+.+......+
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 3455677777776421111 000 0111123334775 79999999999999999999874332100
Q ss_pred --C-----CC----------CC--CCCCCCCEEEEEECCCCCEEEEE---------------------------------
Q 000080 2262 --A-----AN----------VP--PPYALASISALQFDHYGHRFASA--------------------------------- 2289 (2389)
Q Consensus 2262 --g-----h~----------~p--~~GH~~~V~sVaFSPDG~~LASg--------------------------------- 2289 (2389)
+ +. .| ..|| .+ ..++|+|+..++-..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~-~w-~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAH-NW-HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV 431 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSS-CS-SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred ccCCccccccccccCCeeEECCCCcccc-CC-CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence 0 00 00 0011 00 137888886654431
Q ss_pred ---eCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee
Q 000080 2290 ---ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365 (2389)
Q Consensus 2290 ---S~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH 2365 (2389)
..+|+|.-||+++| +.......+ ......++.. .|.++..+ +.|+.|+.||. .+++.+..+.-.
T Consensus 432 p~~~~~g~l~A~D~~tG-----~~~W~~~~~-~~~~~~~~~t-~gg~vf~g---~~dg~l~a~d~--~tG~~l~~~~~~ 498 (668)
T 1kv9_A 432 PAAVVSGALLAWDPVKQ-----KAAWKVPYP-THWNGGTLST-AGNLVFQG---TAAGQMHAYSA--DKGEALWQFEAQ 498 (668)
T ss_dssp CGGGCEEEEEEEETTTT-----EEEEEEEES-SSCCCCEEEE-TTTEEEEE---CTTSEEEEEET--TTCCEEEEEECS
T ss_pred CCCCccceEEEEeCCCC-----cEEEEccCC-CCCcCceeEe-CCCEEEEE---CCcccchhhhh--hcChhheEecCC
Confidence 23588999999997 234343322 2333345555 56777764 58999999997 577777777543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=87.87 E-value=4.2 Score=47.37 Aligned_cols=126 Identities=7% Similarity=0.022 Sum_probs=86.1
Q ss_pred CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCccc
Q 000080 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2389)
Q Consensus 2231 G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~ 2310 (2389)
+++++..-.++++.++|..+.+.+.++.. + ++ + ..+.+||++|..+..+++|.++|.++.. .
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-~-------~~-G----wglt~dg~~L~vSdgs~~l~~iDp~t~~-----~ 136 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRY-P-------GE-G----WALTSDDSHLYMSDGTAVIRKLDPDTLQ-----Q 136 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEEC-S-------SC-C----CEEEECSSCEEEECSSSEEEEECTTTCC-----E
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeC-C-------CC-c----eEEeeCCCEEEEECCCCeEEEEeCCCCe-----E
Confidence 44555556899999999999999998851 1 11 2 2345788888888889999999999862 2
Q ss_pred ceeeee--cC---CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee------------c-CcEEEE
Q 000080 2311 MESCLC--FS---SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH------------E-GLYDLF 2372 (2389)
Q Consensus 2311 l~tl~g--Hs---~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH------------~-~~V~sv 2372 (2389)
+.+..- +. ..++.+.+. +|++.|.. -.+..|.+-|. .+++.+..+.-. . +--+.|
T Consensus 137 ~~~I~V~~~g~~~~~lNeLe~~--~G~lyanv---w~s~~I~vIDp--~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGI 209 (243)
T 3mbr_X 137 VGSIKVTAGGRPLDNLNELEWV--NGELLANV---WLTSRIARIDP--ASGKVVAWIDLQALVPDADALTDSTNDVLNGI 209 (243)
T ss_dssp EEEEECEETTEECCCEEEEEEE--TTEEEEEE---TTTTEEEEECT--TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred EEEEEEccCCcccccceeeEEe--CCEEEEEE---CCCCeEEEEEC--CCCCEEEEEECCcCccccccccCCcCCceEEE
Confidence 232221 11 345667766 67887764 25668889897 577777777632 1 234689
Q ss_pred eecccchhh
Q 000080 2373 LPLKLLNFA 2381 (2389)
Q Consensus 2373 A~~~~~~~~ 2381 (2389)
|.+|++++.
T Consensus 210 A~d~~~~~l 218 (243)
T 3mbr_X 210 AFDAEHDRL 218 (243)
T ss_dssp EEETTTTEE
T ss_pred EEcCCCCEE
Confidence 999987754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.12 E-value=15 Score=42.86 Aligned_cols=148 Identities=8% Similarity=0.064 Sum_probs=93.6
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCce---eeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA---TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~---l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
-.|++.++|.++++.-.++.+.++++..... +...+ ++-... + .......|+++|++++|-++.+-...+||.
T Consensus 73 EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~-~~~~~~--~-~N~g~EGLA~d~~~~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 73 ETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIK-IPLQES--P-TNCGFEGLAYSRQDHTFWFFKEKNPIEVYK 148 (255)
T ss_dssp EEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEE-CCCSSC--C-CSSCCEEEEEETTTTEEEEEEESSSEEEEE
T ss_pred HHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeec-cccccc--c-ccCCcceEEEeCCCCEEEEEECcCCceEEE
Confidence 4568889998877765778899998865542 22222 110000 1 235589999999998888888777777776
Q ss_pred CCCCCccCcccceee-------eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCce--EEEE-eec---
Q 000080 2300 LEVGGRSNVRPMESC-------LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR--ASIT-CHE--- 2366 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl-------~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v--~sL~-GH~--- 2366 (2389)
+. |-. ....+.-. .-+-....+++|.|.+|++++.+ ...+.+-..|. .++.+ ..|. |..
T Consensus 149 ~~-g~~-~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS---~~s~~L~~~d~---~g~~~~~~~L~~g~~~l~ 220 (255)
T 3qqz_A 149 VN-GLL-SSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLS---HESRALQEVTL---VGEVIGEMSLTKGSRGLS 220 (255)
T ss_dssp EE-STT-CSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEE---TTTTEEEEECT---TCCEEEEEECSTTGGGCS
T ss_pred Ec-ccc-cCCceeeecchhhccccccCCceeEEEcCCCCeEEEEE---CCCCeEEEEcC---CCCEEEEEEcCCccCCcc
Confidence 65 200 00111111 11344678999999999988874 57888999995 45543 3343 221
Q ss_pred ---CcEEEEeecccchhhh
Q 000080 2367 ---GLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2367 ---~~V~svA~~~~~~~~~ 2382 (2389)
.+.-.||+.++|+--+
T Consensus 221 ~~~~qpEGia~d~~G~lyI 239 (255)
T 3qqz_A 221 HNIKQAEGVAMDASGNIYI 239 (255)
T ss_dssp SCCCSEEEEEECTTCCEEE
T ss_pred cccCCCCeeEECCCCCEEE
Confidence 2556899999997433
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=87.10 E-value=18 Score=47.22 Aligned_cols=145 Identities=10% Similarity=0.094 Sum_probs=91.6
Q ss_pred cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCC-CCCCCCEEEEEECCCCCEEEEEeCCCcE
Q 000080 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP-PYALASISALQFDHYGHRFASAALDGTV 2295 (2389)
Q Consensus 2217 v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~-~GH~~~V~sVaFSPDG~~LASgS~DgTV 2295 (2389)
+.+..|+++...++|.+.+ |+.++-|..||..+++... +...++. +. .-....|++++..++|+.|-.|+.++.|
T Consensus 354 l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~-~~~~~~~--~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl 429 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTS-YTLQEDE--SARGIGSNNIKAVYVDEKKSLVYIGTHAGGL 429 (795)
T ss_dssp CSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEE-ECCC--------CCSCSCEEEEEEETTTTEEEEEETTTEE
T ss_pred CCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEE-EecCCCC--cccCCCCccEEEEEEcCCCCEEEEEeCcCce
Confidence 3344579999999998666 6777779999987776433 3210000 00 0123679999999999856667777789
Q ss_pred EEeeCCCCCccCcccceeee-----ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe------
Q 000080 2296 CTWQLEVGGRSNVRPMESCL-----CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC------ 2364 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~-----gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G------ 2364 (2389)
..+|.+++. +..+. .+...|.+++..+ +|++.+.+ .+ -+.+||. .+ .....+..
T Consensus 430 ~~~d~~~~~------~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt----~~-Gl~~~~~--~~-~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 430 SILHRNSGQ------VENFNQRNSQLVNENVYAILPDG-EGNLWLGT----LS-ALVRFNP--EQ-RSFTTIEKEKDGTP 494 (795)
T ss_dssp EEEETTTCC------EEEECTTTSCCSCSCEEEEEECS-SSCEEEEE----SS-CEEEEET--TT-TEEEECCBCTTCCB
T ss_pred eEEeCCCCc------EEEeecCCCCcCCCeeEEEEECC-CCCEEEEe----cC-ceeEEeC--CC-CeEEEccccccccc
Confidence 999998752 11111 2346799999888 88877643 33 4778885 22 22222221
Q ss_pred -ecCcEEEEeecccchh
Q 000080 2365 -HEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2365 -H~~~V~svA~~~~~~~ 2380 (2389)
+.+.|.++...++|+.
T Consensus 495 ~~~~~i~~i~~d~~g~l 511 (795)
T 4a2l_A 495 VVSKQITTLFRDSHKRL 511 (795)
T ss_dssp CCCCCEEEEEECTTCCE
T ss_pred cCCceEEEEEECCCCCE
Confidence 2356777777777753
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=86.99 E-value=3.5 Score=52.88 Aligned_cols=124 Identities=9% Similarity=-0.004 Sum_probs=75.9
Q ss_pred CCCC---eEEEEeCCCcEEEeecCCCceeeEecccCCC------------------CCC------------------CCC
Q 000080 2229 PLRP---FFLVGSSNTHIYLWEFGKDKATATYGVLPAA------------------NVP------------------PPY 2269 (2389)
Q Consensus 2229 PdG~---~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh------------------~~p------------------~~G 2269 (2389)
.+|+ .++.++.||.++.+|..+|+.+..+..-+.- ..| ..|
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 5784 7889999999999999999987665311000 000 011
Q ss_pred CCCCEEEEEECCCCCEEEEEe---------------------------------CCCcEEEeeCCCCCccCcccceeeee
Q 000080 2270 ALASISALQFDHYGHRFASAA---------------------------------LDGTVCTWQLEVGGRSNVRPMESCLC 2316 (2389)
Q Consensus 2270 H~~~V~sVaFSPDG~~LASgS---------------------------------~DgTVkLWDl~tggrs~~k~l~tl~g 2316 (2389)
..++ ..++|+|+..++.... .+|+|.-||+.+|. ...+...
T Consensus 411 g~~w-~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~-----~~W~~~~ 484 (582)
T 1flg_A 411 GKNW-NPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK-----VVWEHKE 484 (582)
T ss_dssp SSCS-SCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC-----EEEEEEE
T ss_pred ccCC-CCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC-----EEEEecC
Confidence 1111 2568888865444332 36899999999973 3333322
Q ss_pred cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee
Q 000080 2317 FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365 (2389)
Q Consensus 2317 Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH 2365 (2389)
+ ..+..-.... .|.++..+ +.|+.++.+|. .+++.+..++..
T Consensus 485 ~-~~~~~g~~~t-agglvf~g---~~dg~l~A~D~--~tG~~lW~~~~~ 526 (582)
T 1flg_A 485 H-LPLWAGVLAT-AGNLVFTG---TGDGYFKAFDA--KSGKELWKFQTG 526 (582)
T ss_dssp S-SCCCSCCEEE-TTTEEEEE---CTTSEEEEEET--TTCCEEEEEECS
T ss_pred C-CCCcccceEe-CCCEEEEE---CCCCcEEEEEC--CCCCEEEEecCC
Confidence 2 1222222233 34566664 58999999997 678888877653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.76 E-value=2.4 Score=50.63 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=63.9
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC----CCEEEEEeCC-----C
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAALD-----G 2293 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD----G~~LASgS~D-----g 2293 (2389)
+.++|.|||+++++ ..++.|++++ +|+.. .+..++.. ..-......|+|+|| |..+++-+.+ +
T Consensus 34 ~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~-~~~~~~v~----~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 34 WALAFLPDGGMLIA-ERPGRIRLFR--EGRLS-TYAELSVY----HRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp EEEEECTTSCEEEE-ETTTEEEEEE--TTEEE-EEEECCCC----CSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred eEEEEcCCCeEEEE-eCCCeEEEEE--CCCcc-EeecceEe----ecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 78899999997776 4569999998 45432 22111100 011245799999999 5666665543 6
Q ss_pred cEEEeeCCCCCccCccccee-ee---ecCCCeeEEEEecCCCCEEEEee
Q 000080 2294 TVCTWQLEVGGRSNVRPMES-CL---CFSSHAMDVSYITSSGSVIAAAG 2338 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~t-l~---gHs~~V~sVAFSP~DGslLASAG 2338 (2389)
.|..+++..+.-...+.+.+ +. +.......++|.| ||.+.++.|
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 67777776321000012221 22 1112336899999 999988865
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=86.28 E-value=5.8 Score=46.33 Aligned_cols=117 Identities=7% Similarity=-0.042 Sum_probs=68.1
Q ss_pred CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC-CCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcc
Q 000080 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA-LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2389)
Q Consensus 2231 G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH-~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k 2309 (2389)
+..+..++.++.|+.+|..+|+.+-.+.. +... +.... ...+.+ ....++..+..++.|+.|..+|.++|.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~----- 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSL-AEKD-GWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT----- 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC-CC----CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC-----
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecC-cccc-ccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC-----
Confidence 55677778899999999999998766541 1110 00000 122322 122346678888999999999999973
Q ss_pred cceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2310 ~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
...............+.. +|.+++. +.|+.|..+|. .+++.+....
T Consensus 125 ~~W~~~~~~~~~~~p~~~--~~~v~v~----~~~g~l~~~d~--~tG~~~W~~~ 170 (376)
T 3q7m_A 125 VAWQTKVAGEALSRPVVS--DGLVLIH----TSNGQLQALNE--ADGAVKWTVN 170 (376)
T ss_dssp EEEEEECSSCCCSCCEEE--TTEEEEE----CTTSEEEEEET--TTCCEEEEEE
T ss_pred EEEEEeCCCceEcCCEEE--CCEEEEE----cCCCeEEEEEC--CCCcEEEEEe
Confidence 233332222111122222 4555543 46888999996 4666665554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=86.06 E-value=14 Score=42.57 Aligned_cols=143 Identities=7% Similarity=0.013 Sum_probs=77.7
Q ss_pred EEEEEEcCCCCeEEEEeCCC--cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~Dg--TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
...|++.|+|+++++..... .|..+|..+|+...... .+. ...-..+++.++++.+++-+.++.|...|
T Consensus 74 p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~-~~~--------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT-LPD--------AIFLNGITPLSDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE-CTT--------CSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEe-CCC--------ccccCcccccCCCcEEEEECCCCeEEEEe
Confidence 46789999999877765433 46667777777543322 111 13346667777777777766788888888
Q ss_pred CCCCCccCcc---c-ce--eeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEEEeecCcEEE
Q 000080 2300 LEVGGRSNVR---P-ME--SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCHEGLYDL 2371 (2389)
Q Consensus 2300 l~tggrs~~k---~-l~--tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL~GH~~~V~s 2371 (2389)
..++. .... . +. ...+.-...+.+ +| ||+.|-.+- +..+.|..+|+.. .++. ...+. .-..-..
T Consensus 145 ~~~~~-~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d--~~~~~I~~~~~~~-~g~~~~~~~~~-~~~~P~g 216 (306)
T 2p4o_A 145 VVQPS-GSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSN--TEKMLLLRIPVDS-TDKPGEPEIFV-EQTNIDD 216 (306)
T ss_dssp TTTTE-EEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEE--TTTTEEEEEEBCT-TSCBCCCEEEE-ESCCCSS
T ss_pred CCCCc-EeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEe--CCCCEEEEEEeCC-CCCCCccEEEe-ccCCCCC
Confidence 76431 0000 0 00 000111234555 78 666544432 5678999999732 1221 22221 1123345
Q ss_pred Eeecccchhh
Q 000080 2372 FLPLKLLNFA 2381 (2389)
Q Consensus 2372 vA~~~~~~~~ 2381 (2389)
++..++|+..
T Consensus 217 i~vd~dG~l~ 226 (306)
T 2p4o_A 217 FAFDVEGNLY 226 (306)
T ss_dssp EEEBTTCCEE
T ss_pred eEECCCCCEE
Confidence 6666666543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=85.99 E-value=16 Score=42.61 Aligned_cols=139 Identities=9% Similarity=-0.057 Sum_probs=82.6
Q ss_pred EEEEEcCCC-CeEEEEeCCCcEEEeecCC---CceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEE
Q 000080 2223 RAFSSHPLR-PFFLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCT 2297 (2389)
Q Consensus 2223 rsVAFsPdG-~~LASGS~DgTIRLWDl~t---Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkL 2297 (2389)
.+++|++++ .++.+-..++.|+.+|... +....++. +. .......|++++.+ +.+.+-..+++|.+
T Consensus 33 ~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~--~~-------~~~~p~glavd~~~~~ly~~d~~~~~I~~ 103 (316)
T 1ijq_A 33 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SR-------DIQAPDGLAVDWIHSNIYWTDSVLGTVSV 103 (316)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--CS-------SCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE--eC-------CCCCcCEEEEeecCCeEEEEECCCCEEEE
Confidence 788999864 5677777889999999864 13223321 11 11345789999754 56666678899999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE-eecCcEEEEeecc
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGLYDLFLPLK 2376 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~-GH~~~V~svA~~~ 2376 (2389)
.|+.... .+.+ ........+++++.|.+|.+..+. . ...+.|...++ .++....+. ..-..-..+|.++
T Consensus 104 ~~~~g~~---~~~~--~~~~~~~P~~iavdp~~g~ly~~d-~-~~~~~I~~~~~---dG~~~~~~~~~~~~~P~gla~d~ 173 (316)
T 1ijq_A 104 ADTKGVK---RKTL--FRENGSKPRAIVVDPVHGFMYWTD-W-GTPAKIKKGGL---NGVDIYSLVTENIQWPNGITLDL 173 (316)
T ss_dssp EETTSSS---EEEE--EECTTCCEEEEEEETTTTEEEEEE-C-SSSCEEEEEET---TSCCEEEEECSSCSCEEEEEEET
T ss_pred EeCCCCc---eEEE--EECCCCCcceEEeCCCCCEEEEEc-c-CCCCeEEEEcC---CCCCeEEEEECCCCCceEEEEec
Confidence 9987421 1111 122235678999999555555552 1 12256777775 344444442 2234456778877
Q ss_pred cchh
Q 000080 2377 LLNF 2380 (2389)
Q Consensus 2377 ~~~~ 2380 (2389)
++++
T Consensus 174 ~~~~ 177 (316)
T 1ijq_A 174 LSGR 177 (316)
T ss_dssp TTTE
T ss_pred cCCE
Confidence 6543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=85.92 E-value=5.1 Score=46.77 Aligned_cols=112 Identities=7% Similarity=0.027 Sum_probs=71.5
Q ss_pred CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCccc
Q 000080 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2389)
Q Consensus 2231 G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~ 2310 (2389)
+..+..++.++.|..+|..+|+.+..... .....+.. ++..+..++.|+.|..+|.++|. .
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~------------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~-----~ 299 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL------------GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV-----T 299 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC------------CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC-----E
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC------------CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc-----E
Confidence 45666778899999999999998766531 22344433 46788888899999999999873 2
Q ss_pred ceeeee-cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcE
Q 000080 2311 MESCLC-FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLY 2369 (2389)
Q Consensus 2311 l~tl~g-Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V 2369 (2389)
...... ........+.. +|.+++ + +.++.|..+|. .+++.+.........+
T Consensus 300 ~w~~~~~~~~~~~~~~~~--~~~l~v-~---~~~g~l~~~d~--~tG~~~~~~~~~~~~~ 351 (376)
T 3q7m_A 300 LWTQSDLLHRLLTSPVLY--NGNLVV-G---DSEGYLHWINV--EDGRFVAQQKVDSSGF 351 (376)
T ss_dssp EEEECTTTTSCCCCCEEE--TTEEEE-E---CTTSEEEEEET--TTCCEEEEEECCTTCB
T ss_pred EEeecccCCCcccCCEEE--CCEEEE-E---eCCCeEEEEEC--CCCcEEEEEecCCCcc
Confidence 332221 11222233333 345444 3 47899999997 4677776665433333
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=85.57 E-value=14 Score=44.62 Aligned_cols=138 Identities=10% Similarity=-0.051 Sum_probs=83.9
Q ss_pred EEEEEEcCC-CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLWD 2299 (2389)
..+|+|++. +.++.+-...+.|+.++...+. +.++.. .+ ......|++++. |+.+.+-...++|.+.+
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~-~~--------~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVS-TG--------LESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEEC-SS--------CSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEe-CC--------CCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 378899975 5567777788999999986544 333210 11 133467899986 45666667788899888
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC-CeEEEeeCCCCCCCceEEEE-eecCcEEEEeeccc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAPPTSSRASIT-CHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D-~TVrLWD~l~~tg~~v~sL~-GH~~~V~svA~~~~ 2377 (2389)
+.... ........-...+++++.|.+|.+..+- ..+ +.|...|+ .+..+..+. ..-..-..||.+++
T Consensus 188 ~dg~~-----~~~l~~~~l~~P~giavdp~~g~ly~td---~~~~~~I~r~~~---dG~~~~~~~~~~~~~PnGlavd~~ 256 (386)
T 3v65_B 188 LDGAH-----RKVLLWQSLEKPRAIALHPMEGTIYWTD---WGNTPRIEASSM---DGSGRRIIADTHLFWPNGLTIDYA 256 (386)
T ss_dssp TTSCS-----CEEEECSSCSCEEEEEEETTTTEEEEEE---CSSSCEEEEEET---TSCSCEEEECSSCSCEEEEEEEGG
T ss_pred CCCCc-----eEEeecCCCCCCcEEEEEcCCCeEEEec---cCCCCEEEEEeC---CCCCcEEEEECCCCCeeeEEEeCC
Confidence 87431 1111222235678999999555555552 233 66777775 344444443 22334567888766
Q ss_pred chh
Q 000080 2378 LNF 2380 (2389)
Q Consensus 2378 ~~~ 2380 (2389)
+++
T Consensus 257 ~~~ 259 (386)
T 3v65_B 257 GRR 259 (386)
T ss_dssp GTE
T ss_pred CCE
Confidence 553
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.49 E-value=4.4 Score=49.78 Aligned_cols=111 Identities=11% Similarity=0.116 Sum_probs=69.4
Q ss_pred EEEEEEcCCCC-eEEEEeCCC----cEEEeecCCCcee--eEecccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCC
Q 000080 2222 TRAFSSHPLRP-FFLVGSSNT----HIYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDG 2293 (2389)
Q Consensus 2222 VrsVAFsPdG~-~LASGS~Dg----TIRLWDl~tGk~l--~Tl~vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~Dg 2293 (2389)
-+.|+|+++|+ ++++...++ .+...+ ..|... .++.. ......|+++| +|+.+++-..++
T Consensus 181 P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-----------~~~p~giavdp~~g~lyv~d~~~~ 248 (430)
T 3tc9_A 181 VRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-----------GQNCNGAETHPINGELYFNSWNAG 248 (430)
T ss_dssp EEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-----------CSSCCCEEECTTTCCEEEEETTTT
T ss_pred cceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-----------CCCceEEEEeCCCCEEEEEECCCC
Confidence 37889999999 555554333 233333 344332 23321 12247789999 788888888889
Q ss_pred cEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2294 TVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
.|..+|..++. ...+..... ...-+.++|+| +|++|..+ ....+.|..+|.
T Consensus 249 ~V~~~~~~~~~---~~~~~~~~~-~~~P~gia~~p-dG~~lyv~--d~~~~~I~~~~~ 299 (430)
T 3tc9_A 249 QVFRYDFTTQE---TTPLFTIQD-SGWEFHIQFHP-SGNYAYIV--VVNQHYILRSDY 299 (430)
T ss_dssp EEEEEETTTTE---EEEEEECSS-SSCCEEEEECT-TSSEEEEE--ETTTTEEEEEEE
T ss_pred EEEEEECCCCc---EEEEEEcCC-CCcceeEEEcC-CCCEEEEE--ECCCCEEEEEeC
Confidence 99999998641 112222211 23467899999 89844333 257788999886
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=85.29 E-value=13 Score=46.21 Aligned_cols=113 Identities=7% Similarity=0.019 Sum_probs=65.3
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECC----CCCEEEEEeC-------
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH----YGHRFASAAL------- 2291 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP----DG~~LASgS~------- 2291 (2389)
++++|.|||+++++-...+.|++++..+|+... +..++.-. ..+........|+|+| +|...++-+.
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~-~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIV-NDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCC-CCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE-EecCCccc-cccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 789999999988876555579999876665422 21122110 0011235688999999 5666666553
Q ss_pred -----CCcEEEeeCCCCC-c-cCccccee-eee-cCCCeeEEEEecCCCCEEEEee
Q 000080 2292 -----DGTVCTWQLEVGG-R-SNVRPMES-CLC-FSSHAMDVSYITSSGSVIAAAG 2338 (2389)
Q Consensus 2292 -----DgTVkLWDl~tgg-r-s~~k~l~t-l~g-Hs~~V~sVAFSP~DGslLASAG 2338 (2389)
...|.-+++..+. + ...+.+.. +.. ..+....++|.| ||.+.++.|
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence 2345555543211 0 00112221 211 123468899999 999999876
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=14 Score=48.22 Aligned_cols=140 Identities=6% Similarity=0.033 Sum_probs=90.0
Q ss_pred eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
..|+++...++|++|-.|+.++-|.++|..+++.. .+.. .. + ..+...|+++...++|+..+... +.+.++|
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~--~~--~-~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~ 477 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQ--RN--S-QLVNENVYAILPDGEGNLWLGTL--SALVRFN 477 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECT--TT--S-CCSCSCEEEEEECSSSCEEEEES--SCEEEEE
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-Eeec--CC--C-CcCCCeeEEEEECCCCCEEEEec--CceeEEe
Confidence 34699999999994555777777999998877643 3321 00 1 12346799999999998777665 4588899
Q ss_pred CCCCCccCcccceee----eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE-------eecCc
Q 000080 2300 LEVGGRSNVRPMESC----LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-------CHEGL 2368 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl----~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~-------GH~~~ 2368 (2389)
.+++. ...+... .-+...|+++...+ +|++.+.+ . +-|..||.. +++ . .+. -+.+.
T Consensus 478 ~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt----~-~Gl~~~~~~--~~~-~-~~~~~~~~~~l~~~~ 544 (795)
T 4a2l_A 478 PEQRS---FTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGG----E-EGLSVFKQE--GLD-I-QKASILPVSNVTKLF 544 (795)
T ss_dssp TTTTE---EEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEE----S-SCEEEEEEE--TTE-E-EECCCSCSCGGGGSC
T ss_pred CCCCe---EEEccccccccccCCceEEEEEECC-CCCEEEEe----C-CceEEEeCC--CCe-E-EEecCCCCCCCCCCe
Confidence 88752 0111110 11246789999998 88877643 3 347778852 222 2 222 13456
Q ss_pred EEEEeecccchh
Q 000080 2369 YDLFLPLKLLNF 2380 (2389)
Q Consensus 2369 V~svA~~~~~~~ 2380 (2389)
|.+++..++|+.
T Consensus 545 i~~i~~d~~g~l 556 (795)
T 4a2l_A 545 TNCIYEASNGII 556 (795)
T ss_dssp EEEEEECTTSCE
T ss_pred eEEEEECCCCCE
Confidence 888888888873
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=84.70 E-value=11 Score=44.18 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=66.2
Q ss_pred EEEEEcCCCCeEEEEeCCCcE-EEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHI-YLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTI-RLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
..|++.+++..++.+. ++.| |-+|-+.-..... . ++...+.+++|+|+|+.+|.+...+..+-+|-.
T Consensus 125 ~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~~~-~----------~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g 192 (327)
T 2xbg_A 125 RLIKALGNGSAEMITN-VGAIYRTKDSGKNWQALV-Q----------EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG 192 (327)
T ss_dssp EEEEEEETTEEEEEET-TCCEEEESSTTSSEEEEE-C----------SCCCCEEEEEECTTSCEEEEETTSSEEEEECTT
T ss_pred EEEEEECCCCEEEEeC-CccEEEEcCCCCCCEEee-c----------CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC
Confidence 6778888888887765 5544 5555332222211 1 123568999999999999888776666666531
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEee
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD 2350 (2389)
+.+ -+++ -......+.++++.+ +|++++.+ .++.+.+++
T Consensus 193 --G~t-W~~~--~~~~~~~~~~~~~~~-~g~~~~~~----~~G~~~~s~ 231 (327)
T 2xbg_A 193 --QTA-WEPH--NRTTSRRLHNMGFTP-DGRLWMIV----NGGKIAFSD 231 (327)
T ss_dssp --CSS-CEEE--ECCSSSCEEEEEECT-TSCEEEEE----TTTEEEEEE
T ss_pred --CCc-eeEC--CCCCCCccceeEECC-CCCEEEEe----CCceEEEec
Confidence 110 0111 123456788999998 78888763 567777773
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=83.86 E-value=25 Score=42.74 Aligned_cols=139 Identities=9% Similarity=-0.054 Sum_probs=83.4
Q ss_pred EEEEEEcCC-CCeEEEEeCCCcEEEeecCCCc---eeeEecccCCCCCCCCCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Q 000080 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVC 2296 (2389)
Q Consensus 2222 VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk---~l~Tl~vl~gh~~p~~GH~~~V~sVaFSP-DG~~LASgS~DgTVk 2296 (2389)
+.+|+|++. +.++.+-..++.|+.+++.... ...++. .. .......|++.+ .|+.+.+-...++|.
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~---~~------~~~~p~glavD~~~~~lY~~d~~~~~I~ 184 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SR------DIQAPDGLAVDWIHSNIYWTDSVLGTVS 184 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE---CS------SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE---eC------CCCCcccEEEEecCCceEEEECCCCeEE
Confidence 388999985 5567777778899999985421 122221 11 124578999998 456666767788999
Q ss_pred EeeCCCCCccCcccceee-eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE-eecCcEEEEee
Q 000080 2297 TWQLEVGGRSNVRPMESC-LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGLYDLFLP 2374 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl-~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~-GH~~~V~svA~ 2374 (2389)
+-+++... ...+ ..--...++|++.|..|.+..|- . ...+.|...++ .+..+..+. ..-..-..||.
T Consensus 185 ~~~~~g~~------~~~l~~~~~~~P~~iavdp~~g~ly~td-~-~~~~~I~~~~~---dG~~~~~~~~~~l~~P~glav 253 (400)
T 3p5b_L 185 VADTKGVK------RKTLFRENGSKPRAIVVDPVHGFMYWTD-W-GTPAKIKKGGL---NGVDIYSLVTENIQWPNGITL 253 (400)
T ss_dssp EECTTTCS------EEEEEECSSCCEEEEEEETTTTEEEEEE-C-SSSCCEEEEET---TSCSCEEEECSSCSCEEEEEE
T ss_pred EEeCCCCc------eEEEEeCCCCCcceEEEecccCeEEEEe-C-CCCCEEEEEeC---CCCccEEEEECCCCceEEEEE
Confidence 98887431 1222 22234578999999555565552 1 22356777775 344444442 22245567787
Q ss_pred cccchh
Q 000080 2375 LKLLNF 2380 (2389)
Q Consensus 2375 ~~~~~~ 2380 (2389)
++++++
T Consensus 254 d~~~~~ 259 (400)
T 3p5b_L 254 DLLSGR 259 (400)
T ss_dssp ETTTTE
T ss_pred EeCCCE
Confidence 766543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=3 Score=48.48 Aligned_cols=140 Identities=13% Similarity=0.006 Sum_probs=74.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
..++|||||.+.+. .+|.++--+..+++.. .+... +..+-..|- ..-.++.|.|+|.+.|+ .||.|.-|+--+
T Consensus 44 ~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s-~t~IG~~Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 44 KFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGR-AKKIGNGGW-NQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHH-CEEEECSCG-GGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred eeEEECCCccEEEE--eCCeEEEECCCCCCcc-ccccc-ccEeccccc-ccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 57899999998887 6665555554342211 11000 000000011 12488999999999999 569998887643
Q ss_pred CCccCccccee--eeec--CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc-----eEEEE--eecCcEEE
Q 000080 2303 GGRSNVRPMES--CLCF--SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-----RASIT--CHEGLYDL 2371 (2389)
Q Consensus 2303 ggrs~~k~l~t--l~gH--s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~-----v~sL~--GH~~~V~s 2371 (2389)
.+. ..-+.. ..+- =..+..|.|.| +|.+-|.+ |+.+.=+. .|++.+ ..++. +.-+..+-
T Consensus 117 ~~~--~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~-----dg~lyr~~--~P~~~~~~wl~~~~~~g~~g~~~yr~ 186 (236)
T 1tl2_A 117 SDT--DNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH-----GQQFYKAL--PPVSNQDNWLARATKIGQGGWDTFKF 186 (236)
T ss_dssp STT--CCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE-----TTEEEEEC--CCSSTTCCHHHHCEEEESSSGGGEEE
T ss_pred CCC--CceeccccEeccCCCCceEEEEECC-CceEEEEe-----CCcEEecC--CCCCCCcccccccceeccCCcceEEE
Confidence 221 111111 1110 03567899999 99999863 55533232 232221 12222 34445556
Q ss_pred Eeecccch
Q 000080 2372 FLPLKLLN 2379 (2389)
Q Consensus 2372 vA~~~~~~ 2379 (2389)
+.+.++|+
T Consensus 187 l~f~~~G~ 194 (236)
T 1tl2_A 187 LFFSSVGT 194 (236)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 66666664
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=83.30 E-value=1.8 Score=55.26 Aligned_cols=82 Identities=15% Similarity=0.020 Sum_probs=52.7
Q ss_pred CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeee-ec
Q 000080 2239 SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCL-CF 2317 (2389)
Q Consensus 2239 ~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~-gH 2317 (2389)
.++.|..||..+|+.+-++.. + ..+.+..+...|.++..++.||+|+.+|.++|. .+.++. +.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~--~---------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~-----~lw~~~~~~ 505 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWE--K---------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK-----ELWNFKMPS 505 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEE--S---------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC-----EEEEEECSS
T ss_pred CCCeEEEEECCCCCEEEEecC--C---------CCccceeEEECCCEEEEEcCCCeEEEEECCCCC-----EEEEEeCCC
Confidence 468999999999998877641 1 112223334456677779999999999999983 343333 22
Q ss_pred CCCeeEEEEecCCCCEEEEe
Q 000080 2318 SSHAMDVSYITSSGSVIAAA 2337 (2389)
Q Consensus 2318 s~~V~sVAFSP~DGslLASA 2337 (2389)
......+.|.. +|++++..
T Consensus 506 ~~~~~p~~~~~-~G~~yv~~ 524 (571)
T 2ad6_A 506 GGIGSPMTYSF-KGKQYIGS 524 (571)
T ss_dssp CCCSCCEEEEE-TTEEEEEE
T ss_pred CcEeeeEEEEE-CCEEEEEE
Confidence 22233466777 77766543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=83.28 E-value=16 Score=43.36 Aligned_cols=137 Identities=10% Similarity=-0.032 Sum_probs=82.9
Q ss_pred EEEEEEcCC-CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC-CCEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPd-G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD-G~~LASgS~DgTVkLWD 2299 (2389)
..+|+|++. +.++.+-...+.|+.++...+....... .+ ......+++.+. |+.+.+-...++|.+.+
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~--------~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TG--------LESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SS--------CSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--CC--------CCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 378899975 5566777788999999986544322221 01 133578999985 55667777788999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC-CeEEEeeCCCCCCCceEEEE-eecCcEEEEeeccc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAPPTSSRASIT-CHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D-~TVrLWD~l~~tg~~v~sL~-GH~~~V~svA~~~~ 2377 (2389)
+.... ........-...+++++.|.+|.+..|- ..+ +.|...|+ .+.....+. ..-..-..||.+++
T Consensus 145 ~dG~~-----~~~l~~~~l~~P~~iavdp~~g~ly~td---~~~~~~I~r~~~---dG~~~~~~~~~~~~~PnGla~d~~ 213 (349)
T 3v64_C 145 LDGAH-----RKVLLWQSLEKPRAIALHPMEGTIYWTD---WGNTPRIEASSM---DGSGRRIIADTHLFWPNGLTIDYA 213 (349)
T ss_dssp TTSCS-----CEEEECTTCSCEEEEEEETTTTEEEEEE---CSSSCEEEEEET---TSCSCEESCCSSCSCEEEEEEETT
T ss_pred CCCCc-----eEEEEeCCCCCcceEEEecCcCeEEEec---cCCCCEEEEEeC---CCCCcEEEEECCCCCcceEEEeCC
Confidence 87431 1111122234578999999566666553 233 67777775 233333332 12233456777765
Q ss_pred ch
Q 000080 2378 LN 2379 (2389)
Q Consensus 2378 ~~ 2379 (2389)
++
T Consensus 214 ~~ 215 (349)
T 3v64_C 214 GR 215 (349)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=83.16 E-value=14 Score=44.08 Aligned_cols=108 Identities=12% Similarity=0.056 Sum_probs=61.9
Q ss_pred EEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC----CCEEEEEeC------
Q 000080 2223 RAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAAL------ 2291 (2389)
Q Consensus 2223 rsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD----G~~LASgS~------ 2291 (2389)
+.|+|.|||+ ++++ ..++.|++++. +|+....+..++. +...| ......|+|+|| |..+++-+.
T Consensus 21 ~~i~~~pdG~~l~V~-e~~G~i~~~~~-~g~~~~~~~~~~~--v~~~g-~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 21 WALAFLPDNHGMLIT-LRGGELRHWQA-GKGLSAPLSGVPD--VWAHG-QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp EEEEECSTTCCEEEE-ETTTEEEEEET-TTEECCCCBSCCC--CCCST-TCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred EEEEEcCCCCEEEEE-eCCceEEEEeC-CCceeeEecCCcc--cccCC-CCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 8899999999 6665 56799999985 4543222221110 00011 245789999995 666666443
Q ss_pred -CCcEEEeeCCCCCc--cCcccce-ee-----eecCCCeeEEEEecCCCCEEEEee
Q 000080 2292 -DGTVCTWQLEVGGR--SNVRPME-SC-----LCFSSHAMDVSYITSSGSVIAAAG 2338 (2389)
Q Consensus 2292 -DgTVkLWDl~tggr--s~~k~l~-tl-----~gHs~~V~sVAFSP~DGslLASAG 2338 (2389)
...|.-+++..++. ...+.+. .+ ..|. ...++|.| ||.+.++.|
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~p-dG~Lyv~~G 148 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDG-KGYLFIALG 148 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECS-SSEEEEEEC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECC-CCcEEEEEC
Confidence 23455566543210 0001111 11 1232 35799999 999888865
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=82.95 E-value=11 Score=45.95 Aligned_cols=143 Identities=10% Similarity=-0.030 Sum_probs=83.5
Q ss_pred EEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC-CCCEEEEEE---CCCCCEEEEEe---------
Q 000080 2225 FSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA-LASISALQF---DHYGHRFASAA--------- 2290 (2389)
Q Consensus 2225 VAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH-~~~V~sVaF---SPDG~~LASgS--------- 2290 (2389)
++|++... +++|.-..++|..||...+....+ . +++-. .+|. ...+..|.+ .|+|+.+++..
T Consensus 18 ~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~-~~~~s--~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 18 TIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-V-IDGAS--SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-C-CTTTC--CSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred ccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-e-cCCcc--ccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 48998555 555544899999999876654433 2 22200 0011 123688999 79988888644
Q ss_pred ----CCCcEEEeeCC---CCCccCcccceeeeec----------C-CCeeEEEEecCCCCEEEEeecCCCC-CeEEEeeC
Q 000080 2291 ----LDGTVCTWQLE---VGGRSNVRPMESCLCF----------S-SHAMDVSYITSSGSVIAAAGHSSNG-INVVVWDT 2351 (2389)
Q Consensus 2291 ----~DgTVkLWDl~---tggrs~~k~l~tl~gH----------s-~~V~sVAFSP~DGslLASAG~sS~D-~TVrLWD~ 2351 (2389)
.++.|..+|+. ++.. .....+... . ..+++++..+ +|+..++.. .. +. ||.+
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~---~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s---~~~~~--I~rV 164 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKP---VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFA---LGMPA--IARV 164 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCC---SEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEE---ESSCE--EEEE
T ss_pred cccCCCCEEEEEcCCcCCCCCE---EEEecCccccccccccccccccCCceeEECC-CCCEEEeCC---CCCCe--EEEE
Confidence 37889999999 7631 111222211 1 2488999999 999998864 33 33 4443
Q ss_pred CCCCCCceEEEE-ee-----cCcEEEEeecccchhh
Q 000080 2352 LAPPTSSRASIT-CH-----EGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2352 l~~tg~~v~sL~-GH-----~~~V~svA~~~~~~~~ 2381 (2389)
. +.++.+..+. .. .-+.+-++++|+|+..
T Consensus 165 ~-pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~L 199 (334)
T 2p9w_A 165 S-ADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKL 199 (334)
T ss_dssp C-TTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEE
T ss_pred e-CCCCEEeeeeecCCCcccccCcceEEEeCCCCEE
Confidence 2 3444333321 11 1124467778777654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=82.67 E-value=24 Score=44.54 Aligned_cols=144 Identities=11% Similarity=-0.007 Sum_probs=85.2
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
|......+|..++.+ .|+.||.=++..+..-+.+.. |.+- ....|+.+..||+|++||..+. .+|.+-.+-.
T Consensus 24 R~~~~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~-~~~i-----~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~ 95 (452)
T 3pbp_A 24 RYIFSSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNF-SRHL-----VLDDTFHVISSTSGDLLCLFND-NEIFVMEVPW 95 (452)
T ss_dssp EEEEEETTTTEEEEE-ETTEEEEEETTTCSSCEEEEC-TTTC-----CCCTTCEEEECTTSSEEEEECS-SEEEEEECCT
T ss_pred cEEEEEcCCCEEEEE-ECCEEEEEECCCCCcceEEec-Cccc-----ccCceeEEEECCCCCEEEEecC-CeEEEEEecC
Confidence 455566677766664 568899988875543344431 1100 1135889999999999999854 6899988874
Q ss_pred CCccCccc--------ceeeee------cCCCeeEEEEecC--CCCEEEEeecCCCCCeEEEeeCCCCCCCce------E
Q 000080 2303 GGRSNVRP--------MESCLC------FSSHAMDVSYITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSR------A 2360 (2389)
Q Consensus 2303 ggrs~~k~--------l~tl~g------Hs~~V~sVAFSP~--DGslLASAG~sS~D~TVrLWD~l~~tg~~v------~ 2360 (2389)
+.. .... .+++.- .+..|..|-|+|- .|..|++- .+|++||+||+........ .
T Consensus 96 ~~~-~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL---tsD~~Ir~yDl~~s~~~P~~L~k~~~ 171 (452)
T 3pbp_A 96 GYS-NVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL---KEDDTITMFDILNSQEKPIVLNKPNN 171 (452)
T ss_dssp TCS-CCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE---ETTSCEEEEETTCTTSCCEEESCCCS
T ss_pred ccc-cCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE---ecCCEEEEEEcccCCCCCcchhcccc
Confidence 310 0010 011111 2467999999984 23345443 3899999999853221112 1
Q ss_pred --EEEeecCcEEEEeecccc
Q 000080 2361 --SITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2361 --sL~GH~~~V~svA~~~~~ 2378 (2389)
.+..+...|.+++|..+|
T Consensus 172 ~fg~d~~~~ev~S~~Fg~~~ 191 (452)
T 3pbp_A 172 SFGLDARVNDITDLEFSKDG 191 (452)
T ss_dssp EEESCSSCCCEEEEEECTTS
T ss_pred ccCCCcccceEEEEEEcCCC
Confidence 112233567777777643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=81.33 E-value=13 Score=45.31 Aligned_cols=111 Identities=10% Similarity=0.118 Sum_probs=66.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCC----CCEEEEEe--CCCcEE
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAA--LDGTVC 2296 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPD----G~~LASgS--~DgTVk 2296 (2389)
+.|+|.|||.++++--..|.|++++..+|+... +..++. + ..........|+|+|| |...++=+ .++.|-
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~-v~~~~~--v-~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE-LGEVPG--V-SPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTT--C-CCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcEee-ecccCc--e-eecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 889999999998886668999999876665422 211110 0 0112356899999995 66666533 445555
Q ss_pred EeeCCCCC----c-cCcccce-eee-ecCCCeeEEEEecCCCCEEEEee
Q 000080 2297 TWQLEVGG----R-SNVRPME-SCL-CFSSHAMDVSYITSSGSVIAAAG 2338 (2389)
Q Consensus 2297 LWDl~tgg----r-s~~k~l~-tl~-gHs~~V~sVAFSP~DGslLASAG 2338 (2389)
-|.+..+. + ...+.+. .+. +..+....++|.| ||.+.++.|
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence 56554310 0 0112222 221 1112345799999 999999876
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=81.25 E-value=29 Score=41.30 Aligned_cols=111 Identities=5% Similarity=-0.040 Sum_probs=70.1
Q ss_pred EEEEEcCC-CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCC-CcEEEee
Q 000080 2223 RAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALD-GTVCTWQ 2299 (2389)
Q Consensus 2223 rsVAFsPd-G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~D-gTVkLWD 2299 (2389)
..+++.+. |.++.+-+..+.|...+.. |+...++. .. ....-+.|+++|++ ..+.+-..+ +.|...+
T Consensus 119 ~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l~--~~-------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVLL--WQ-------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE--CT-------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred cEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEEE--eC-------CCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 45689974 5667777788899999985 54444432 11 12456999999965 555555555 7788777
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
+.... .+.+. ...-...+.++++|++|.+..+ .+..+.|...|+
T Consensus 189 ~dG~~---~~~~~--~~~~~~PnGla~d~~~~~lY~a---D~~~~~I~~~~~ 232 (349)
T 3v64_C 189 MDGSG---RRIIA--DTHLFWPNGLTIDYAGRRMYWV---DAKHHVIERANL 232 (349)
T ss_dssp TTSCS---CEESC--CSSCSCEEEEEEETTTTEEEEE---ETTTTEEEEEET
T ss_pred CCCCC---cEEEE--ECCCCCcceEEEeCCCCEEEEE---ECCCCEEEEEeC
Confidence 76321 11111 1122456789999845555554 256788999996
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.18 E-value=20 Score=41.79 Aligned_cols=111 Identities=10% Similarity=0.046 Sum_probs=72.3
Q ss_pred CCCCcCceeEEEEEEcCCCC-eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC
Q 000080 2213 PPATVENISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2389)
Q Consensus 2213 ~~atv~ni~VrsVAFsPdG~-~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~ 2291 (2389)
++..+.+ .+..++++|++. +++....++.|..-|.. |+.++++. +. |. ...-.|++.++|.++++.-.
T Consensus 21 ~l~g~~~-~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-l~-------g~-~D~EGIa~~~~g~~~vs~E~ 89 (255)
T 3qqz_A 21 EIAGITN-NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-LD-------FV-KDLETIEYIGDNQFVISDER 89 (255)
T ss_dssp ECTTCCS-CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-CS-------SC-SSEEEEEECSTTEEEEEETT
T ss_pred ECCCccc-CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-cC-------CC-CChHHeEEeCCCEEEEEECC
Confidence 3444433 258999999876 45556778899999986 88777763 21 22 45889999999987676667
Q ss_pred CCcEEEeeCCCCCccCcccceee------eecCCCeeEEEEecCCCCEEEEe
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESC------LCFSSHAMDVSYITSSGSVIAAA 2337 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl------~gHs~~V~sVAFSP~DGslLASA 2337 (2389)
++.+.+.++...+. ...+... ..+......+||.| +++.|.++
T Consensus 90 ~~~l~~~~v~~~~~--i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va 138 (255)
T 3qqz_A 90 DYAIYVISLTPNSE--VKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFF 138 (255)
T ss_dssp TTEEEEEEECTTCC--EEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEE
T ss_pred CCcEEEEEcCCCCe--eeeeeeeccccccccccCCcceEEEeC-CCCEEEEE
Confidence 78888888876431 0111111 12344557899999 55444444
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.97 E-value=24 Score=45.95 Aligned_cols=141 Identities=11% Similarity=0.023 Sum_probs=87.8
Q ss_pred cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 000080 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2389)
Q Consensus 2217 v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVk 2296 (2389)
+.+..|+++...++|.+.+ |+.++-|..||..+++.. .+. ... ......|.++...++|+..+ |+.++.+.
T Consensus 360 l~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~--~~~----~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~ 430 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQGKLWI-GTDGGGINVFENGKRVAI-YNK--ENR----ELLSNSVLCSLKDSEGNLWF-GTYLGNIS 430 (781)
T ss_dssp CSSSCEEEEEECTTSCEEE-EEBSSCEEEEETTEEEEE-CC-----------CCCSBEEEEEECTTSCEEE-EETTEEEE
T ss_pred CCCcceEEEEEcCCCCEEE-EeCCCcEEEEECCCCeEE-Ecc--CCC----CCCCcceEEEEECCCCCEEE-EeccCCEE
Confidence 3344579999999988665 565666999997654332 221 000 12346799999999998776 56667788
Q ss_pred EeeCCCCCccCcccceeee---ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe-e-----cC
Q 000080 2297 TWQLEVGGRSNVRPMESCL---CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-H-----EG 2367 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~---gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G-H-----~~ 2367 (2389)
.+|.+++. +..+. -....|++++..+ +|.+.+.+ . +-|..+|. .+++ ...+.. . .+
T Consensus 431 ~~~~~~~~------~~~~~~~~~~~~~v~~i~~d~-~g~lwigt----~-~Gl~~~~~--~~~~-~~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 431 YYNTRLKK------FQIIELEKNELLDVRVFYEDK-NKKIWIGT----H-AGVFVIDL--ASKK-VIHHYDTSNSQLLEN 495 (781)
T ss_dssp EECSSSCE------EEECCSTTTCCCCEEEEEECT-TSEEEEEE----T-TEEEEEES--SSSS-CCEEECTTTSSCSCS
T ss_pred EEcCCCCc------EEEeccCCCCCCeEEEEEECC-CCCEEEEE----C-CceEEEeC--CCCe-EEecccCcccccccc
Confidence 89887651 12221 1346789998888 78877642 3 45788885 2222 222221 1 35
Q ss_pred cEEEEeecccchhh
Q 000080 2368 LYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2368 ~V~svA~~~~~~~~ 2381 (2389)
.|.+++..++|+.-
T Consensus 496 ~i~~i~~d~~g~lW 509 (781)
T 3v9f_A 496 FVRSIAQDSEGRFW 509 (781)
T ss_dssp CEEEEEECTTCCEE
T ss_pred eeEEEEEcCCCCEE
Confidence 67888887777643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.96 E-value=2.7 Score=47.05 Aligned_cols=96 Identities=14% Similarity=0.253 Sum_probs=72.7
Q ss_pred CCCHHHHHHcCcEEEEeChHHHHHHHHHHHHHHHhccCCcchhHHHHHHhcchHHHHHHHhcccCCCchhHHhHhhcccC
Q 000080 1225 EPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ 1304 (2389)
Q Consensus 1225 ~~sW~~~r~~Gv~~Wl~~~~~Lr~~~EkIAr~ey~~~kDP~dcaLfYlAL~Kk~vL~gL~k~~~~~k~~~m~~FLsnDFs 1304 (2389)
...|+.+-+ ..|+..==.||..-|++.+|.....++|...|.+.-|..|-|++...
T Consensus 34 ~~~Wk~Lg~----------~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~-------------- 89 (177)
T 3mkq_B 34 SITWERLIQ----------EALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTR-------------- 89 (177)
T ss_dssp HHHHHHHHH----------HHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHH----------HHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHC--------------
Confidence 345776543 34444334589999999999999999999999998888777765422
Q ss_pred hHHHHHHHHhhHHHHhhcchhHHHHHHHHhcCChhHHHHHHHHhcCChhhhhhhhhhhc
Q 000080 1305 EEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVE 1363 (2389)
Q Consensus 1305 e~RWr~AAlKNAyaLLsK~Ry~~AAAFFLLAg~lkDAV~Vc~~~L~D~qLAi~IaRLyE 1363 (2389)
.+|-.|-.-+++-|++++|+++. .+.+-+++|+++||-|-
T Consensus 90 ------------------g~~n~af~~~l~lGdv~~~i~lL-~~~~r~~eA~~~A~t~g 129 (177)
T 3mkq_B 90 ------------------EDFGSMLLNTFYNNSTKERSSIF-AEGGSLPLAYAVAKANG 129 (177)
T ss_dssp ------------------TCHHHHHHHHHHHTCHHHHHHHH-HHTTCHHHHHHHHHHTT
T ss_pred ------------------ccHHHHHHHHHHcCCHHHHHHHH-HHCCChHHHHHHHHHcC
Confidence 23344445577789999999996 56799999999999983
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2389 | ||||
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 |
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 1e-06
Identities = 37/252 (14%), Positives = 64/252 (25%), Gaps = 20/252 (7%)
Query: 570 LMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVM 629
L GH G + C TG + L N V
Sbjct: 51 LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT 110
Query: 630 YNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCIDDNNTVKCSM-----------CKF 678
+K + VW + + DD V S C+F
Sbjct: 111 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170
Query: 679 ETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPY 738
T G K I + + + + + + + C +
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVRCIRFDNK 229
Query: 739 TMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAAS 798
+ +G DG +++W + + LV H G V + +I + S
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD- 286
Query: 799 HSNAVSNVRIWE 810
+ IW+
Sbjct: 287 -----DTILIWD 293
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.1 bits (118), Expect = 2e-06
Identities = 45/347 (12%), Positives = 85/347 (24%), Gaps = 61/347 (17%)
Query: 484 SIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLST----------ISNCISDLPT 533
++ GH + +V HP F + VS + + W T +
Sbjct: 12 ALSGHRSPVTRVIFHPV---FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 534 LMPSWKLCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIV 593
++ ++ D + + IV S+ + +
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 594 CHYVCTIPFTGHGHYEDGPANIFSVPLP----SCNDKTVMYNKF--MLLGVWLKGLESLS 647
T GH E + ND+TV L+ +
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 648 WEITFHSFDLSESCCGCIDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFP----EPHT 703
I++ S F + + I + S+ H
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHD 247
Query: 704 RNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSC 763
NWV + + D +LR+W +
Sbjct: 248 -NWVRGVLFHSGGKFI---------------------LSCADDKTLRVWDYK-------- 277
Query: 764 MPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWE 810
+ L AH+ V+++ + T S V++WE
Sbjct: 278 -NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (94), Expect = 0.002
Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 23/153 (15%)
Query: 2200 GWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV 2259
+ + E + S PF L GS + I +W+ T
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-- 243
Query: 2260 LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319
+ + F G S A D T+ W + + ++
Sbjct: 244 --------VGHDNWVRGVLFHSGGKFILSCADDKTLRVW--------DYKNKRCMKTLNA 287
Query: 2320 HAMDVSYITSS--GSVIAAAGHSSNGINVVVWD 2350
H V+ + + V VW+
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQ---TVKVWE 317
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 7e-05
Identities = 32/328 (9%), Positives = 80/328 (24%), Gaps = 49/328 (14%)
Query: 482 ILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLC 541
+ +I GH I + V+P +S S D G ++ WS S++
Sbjct: 6 LKTISGHNKGITALTVNPLIS-----GSYD--GRIMEWSSSSM----------------- 41
Query: 542 GKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIP 601
+ + SL + + + SQ +V +
Sbjct: 42 ----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97
Query: 602 FTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESC 661
+ N + + ++S
Sbjct: 98 TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 157
Query: 662 CGCIDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPM 721
+ + G + +R + + +
Sbjct: 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217
Query: 722 QQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSA 781
+ + + +ATG D ++ ++ + +++ L AH+ V+
Sbjct: 218 KGANEEEIEED------LVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNN 263
Query: 782 ISLTDGGRKIATVSAASHSNAVSNVRIW 809
+ + + A + ++ W
Sbjct: 264 LLWETPST-LVSSGAD------ACIKRW 284
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 9e-05
Identities = 38/360 (10%), Positives = 82/360 (22%), Gaps = 42/360 (11%)
Query: 453 LHAQRSGDVEDVS-SDKSSTGQILSCSASRILSIEGHTGKILQVAVHPCVSEFELAVSLD 511
H G ++ V + G + A +I ++ H + V + +
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRH--VYTG-- 69
Query: 512 SNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTRKSCSNY-TSLRWAPSLLDEDMVLL 570
G + W +S P K + NY S + P L+
Sbjct: 70 GKGCVKVWDISH------------PGNKSPVSQLDCLNRDNYIRSCKLLPD----GCTLI 113
Query: 571 MGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMY 630
+G + T + +
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173
Query: 631 NKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCIDDNNTVKCSMCKFETTFCGKKYFIG 690
+ +I+ L + ++ + F + + +G
Sbjct: 174 TLVR--QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG 231
Query: 691 VNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLR 750
P + V V P+ + + + + + D L
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLN 290
Query: 751 LWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWE 810
WR+ G + V + ++ + I T S ++E
Sbjct: 291 AWRTPYG---------ASIFQS-KESSSVLSCDISVDDKYIVTGSGDKK------ATVYE 334
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.3 bits (103), Expect = 1e-04
Identities = 44/326 (13%), Positives = 96/326 (29%), Gaps = 36/326 (11%)
Query: 484 SIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGK 543
++ GH KI + + L VS +G L+ W T +N + +P C
Sbjct: 50 TLRGHLAKIYAMHWGT---DSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAY 105
Query: 544 LRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFT 603
+ + + + + +S D + T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 604 GHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCG 663
+ + + + ++ L V S + + + +D+ E C
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV------SGACDASAKLWDVREGMCR 219
Query: 664 CIDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQ 723
+ + F G + G + + + + + +++ +
Sbjct: 220 QTFTGHESDINAICFFPN--GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI---T 274
Query: 724 KLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAIS 783
+ + + GY D + +W + + G+L H VS +
Sbjct: 275 SVSFSKSG------RLLLAGYDDFNCNVW---------DALKADRAGVLAGHDNRVSCLG 319
Query: 784 LTDGGRKIATVSAASHSNAVSNVRIW 809
+TD G +AT S S ++IW
Sbjct: 320 VTDDGMAVATGSWD------SFLKIW 339
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.1 bits (94), Expect = 0.001
Identities = 27/325 (8%), Positives = 60/325 (18%), Gaps = 37/325 (11%)
Query: 485 IEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKL 544
GH I ++ S D+ G + W +ST P + +
Sbjct: 8 RYGHNKAITALSSSADGK---TLFSADAEGHINSWDIST-GISNRVFPDVHATMITG--- 60
Query: 545 RTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTG 604
+ L +V + VD
Sbjct: 61 -----------------IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 103
Query: 605 HGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGC 664
+ + + + + + +
Sbjct: 104 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 163
Query: 665 IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQK 724
+V F + + +
Sbjct: 164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 223
Query: 725 LVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISL 784
+ATG D S+ +W ++ V+++
Sbjct: 224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD------HPIIIKGAHAMSSVNSVIW 277
Query: 785 TDGGRKIATVSAASHSNAVSNVRIW 809
+ I + SN++ W
Sbjct: 278 LNETT-IVSAGQD------SNIKFW 295
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 0.001
Identities = 46/348 (13%), Positives = 95/348 (27%), Gaps = 30/348 (8%)
Query: 476 SCSASRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDL---- 531
+ ++L +GH ++ + C VS + L WS T C+ L
Sbjct: 5 ELKSPKVL--KGHDDHVI-TCLQFC---GNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHT 57
Query: 532 -----PTLMPSWKLCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQ 586
+ + + G N + +L + H+
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 587 TEVDDIVCHYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESL 646
T + C GH + D V L L+
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD-PETETCLHTLQGH 176
Query: 647 SWEITFHSFDLSESCCGCIDDNNTVKCSMCKFE----TTFCGKKYFIGVNPCSSQFPEPH 702
+ + FD G +D +++ + T + G+ + +
Sbjct: 177 TNRVYSLQFDGIHVVSGSLD--TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 234
Query: 703 TRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIP-PYTMATGYSDGSLRLWRSELGGSST 761
+ V + + L +Q + + + T DG+++LW + G
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 294
Query: 762 SCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIW 809
+ + E G G V I ++ A S + + + +
Sbjct: 295 NLVTLESGG----SGGVVWRIRASNTKLVCAVGS--RNGTEETKLLVL 336
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 0.001
Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY 2282
+ ++ + L GS + + W+ + ++A +
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML----QGHRNSVISVAVANGSSLGPE 367
Query: 2283 GHRFASAALDGTVCTWQLE 2301
+ FA+ + D W+ +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.004
Identities = 7/67 (10%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 2273 SISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS 2332
IS ++ + DG++ ++ ++ ++ + L + + ++I ++
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 2333 VIAAAGH 2339
I
Sbjct: 71 QIYVGTV 77
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2389 | |||
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.86 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.81 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.8 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.78 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.77 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.77 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.76 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.75 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.75 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.75 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.74 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.74 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.72 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.71 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.7 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.68 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.67 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.67 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.67 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.65 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.64 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.6 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.6 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.6 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.58 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.56 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.54 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.45 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.41 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.41 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.4 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.4 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.35 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.25 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.22 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.2 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.18 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.15 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.15 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.98 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.68 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.54 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.53 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.5 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.35 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.33 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.11 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.84 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.66 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.63 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.44 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.27 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.19 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.19 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.13 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.96 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.34 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.02 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.01 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 95.91 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 95.83 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.71 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.62 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.49 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 95.09 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.65 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.34 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 91.58 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 90.97 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 87.6 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 87.0 |
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=8.4e-22 Score=227.52 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=123.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc---EEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT---VCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT---VkL 2297 (2389)
.+.+|+|+||| +|||||.|++|||||+.+++++.++.. .+ ...||...|++|+|||||++||+|+.|++ |+|
T Consensus 186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~--~~--~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l 260 (393)
T d1sq9a_ 186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES--QH--SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260 (393)
T ss_dssp CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--CC-----CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccc--cc--ccccccceEEEcccccccceeeeecCCCCcceeee
Confidence 35789999998 899999999999999999999887752 11 23578899999999999999999999986 999
Q ss_pred eeCCCCCcc--------CcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcE
Q 000080 2298 WQLEVGGRS--------NVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLY 2369 (2389)
Q Consensus 2298 WDl~tggrs--------~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V 2369 (2389)
||++++... .......+.||++.|++++|+| ||++|||+ |.|++|||||+ .+++++++|.||++.|
T Consensus 261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~---s~D~~v~vWd~--~~g~~~~~l~gH~~~v 334 (393)
T d1sq9a_ 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSA---GWDGKLRFWDV--KTKERITTLNMHCDDI 334 (393)
T ss_dssp EETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEE---ETTSEEEEEET--TTTEEEEEEECCGGGC
T ss_pred cccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEE---CCCCEEEEEEC--CCCCEEEEECCcCCcc
Confidence 999986310 0011222358999999999999 99999997 49999999998 6789999999999988
Q ss_pred E----EEeecccchhhhc
Q 000080 2370 D----LFLPLKLLNFALS 2383 (2389)
Q Consensus 2370 ~----svA~~~~~~~~~s 2383 (2389)
. .++++++|+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~ 352 (393)
T d1sq9a_ 335 EIEEDILAVDEHGDSLAE 352 (393)
T ss_dssp SSGGGCCCBCTTSCBCSS
T ss_pred cCCccEEEECCCCCEEEE
Confidence 7 5888888876543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=1.2e-18 Score=185.39 Aligned_cols=170 Identities=12% Similarity=0.156 Sum_probs=141.1
Q ss_pred ccceeeccccccccccccccCC--CCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPP--ATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~--atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
...+++ +.|...++|+..... .++ +...+.+++|+|++++|++|+.|++|++||+.+++.+..+.
T Consensus 114 ~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~---------- 182 (317)
T d1vyhc1 114 DHIVSA-SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---------- 182 (317)
T ss_dssp SEEEEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----------
T ss_pred ceEEee-ccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEe----------
Confidence 345555 566666666653211 111 12346889999999999999999999999999999888774
Q ss_pred CCCCCEEEEEECCCC--------------------CEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEec
Q 000080 2269 YALASISALQFDHYG--------------------HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYIT 2328 (2389)
Q Consensus 2269 GH~~~V~sVaFSPDG--------------------~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP 2328 (2389)
+|...|.+++|+|++ ..+++|+.|++|++||++++ +++.++.+|...|.+++|+|
T Consensus 183 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~ 257 (317)
T d1vyhc1 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-----MCLMTLVGHDNWVRGVLFHS 257 (317)
T ss_dssp CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEECS
T ss_pred cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-----cEEEEEeCCCCCEEEEEECC
Confidence 356789999998875 47999999999999999986 57888999999999999999
Q ss_pred CCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2329 SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2329 ~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
+|++||++| .|++|+|||+ .+++.++.+.+|++.|++++++|+|++.++-
T Consensus 258 -~~~~l~s~~---~dg~i~iwd~--~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~ 307 (317)
T d1vyhc1 258 -GGKFILSCA---DDKTLRVWDY--KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307 (317)
T ss_dssp -SSSCEEEEE---TTTEEEEECC--TTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred -CCCEEEEEE---CCCeEEEEEC--CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 999999974 8999999998 5778899999999999999999999988774
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.80 E-value=1.4e-18 Score=196.53 Aligned_cols=207 Identities=15% Similarity=0.178 Sum_probs=152.0
Q ss_pred ccccccCCCCCCCcc---eeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCC
Q 000080 29 RSEFIPTAPTRSTST---IDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPE 105 (2389)
Q Consensus 29 ~~~~ip~ap~~~~~a---i~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd 105 (2389)
..+++||.|.+.|+. ++++|+ | ..+||++|..+++..+.++ +.. +++.+|.+ +|++++|||+
T Consensus 5 ~~~~~~~~p~~~r~~~~~~a~~~~--g-~~l~~~~~~~v~i~~~~~~----~~~------~~~~~H~~--~v~~~~~sp~ 69 (311)
T d1nr0a1 5 QTALFPSLPRTARGTAVVLGNTPA--G-DKIQYCNGTSVYTVPVGSL----TDT------EIYTEHSH--QTTVAKTSPS 69 (311)
T ss_dssp EEEEECCCCCCCTTCCCCCEECTT--S-SEEEEEETTEEEEEETTCS----SCC------EEECCCSS--CEEEEEECTT
T ss_pred ccccccCCCCCCCCCeEEEEEcCC--C-CEEEEEeCCEEEEEECCCC----cee------EEEcCCCC--CEEEEEEeCC
Confidence 457889999999975 566677 8 4899999999888876552 222 66778877 8999999997
Q ss_pred CCCCCcEEE-ecCCeEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc----eEEeeccCCcEEE
Q 000080 106 TPSIGQLAA-ASENCIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME----TVLWKKKNTLWEI 179 (2389)
Q Consensus 106 ~~~~GeIaA-SyDntIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD----V~IW~~~~s~Wec 179 (2389)
+..||+ ++|++|+||.... + ......++. |+..|.+|+|+|+|++|+++|++ +.||+..++.-
T Consensus 70 ---g~~latg~~dg~i~iwd~~~----~--~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-- 138 (311)
T d1nr0a1 70 ---GYYCASGDVHGNVRIWDTTQ----T--THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-- 138 (311)
T ss_dssp ---SSEEEEEETTSEEEEEESSS----T--TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--
T ss_pred ---CCeEeccccCceEeeeeeec----c--ccccccccccccCccccccccccccccccccccccccccccccccccc--
Confidence 444543 5799999998761 1 233334443 78899999999999999999874 67888655432
Q ss_pred EEEeeccccceEEEEeecCCCc--eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCC
Q 000080 180 AWKFKENYPQNLVSATWSIEGP--SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRH 257 (2389)
Q Consensus 180 vwt~~~~~~~~ivsvaWSpdG~--fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~ 257 (2389)
+.++. .|...+.+++|+|+|. ||||+.+.. +.+|.. ...........|..+|+++.|+|
T Consensus 139 ~~~l~-~h~~~v~~v~~~~~~~~~l~sgs~d~~------------i~i~d~-~~~~~~~~~~~~~~~i~~v~~~p----- 199 (311)
T d1nr0a1 139 NGNLT-GQARAMNSVDFKPSRPFRIISGSDDNT------------VAIFEG-PPFKFKSTFGEHTKFVHSVRYNP----- 199 (311)
T ss_dssp CBCCC-CCSSCEEEEEECSSSSCEEEEEETTSC------------EEEEET-TTBEEEEEECCCSSCEEEEEECT-----
T ss_pred ccccc-ccccccccccccccceeeecccccccc------------cccccc-cccccccccccccccccccccCc-----
Confidence 22233 3456677999999987 888887643 344422 22234456678999999999999
Q ss_pred CCCCCccccCceEEeeecCCeEEEEEeecCC
Q 000080 258 SPGDTKRSQRHVLLTCCLDGTVRLWCEMDSG 288 (2389)
Q Consensus 258 ~~~Dgk~~~~nILAScSdDgTVRLW~e~d~G 288 (2389)
|++ .|++++.||+|+||+..+..
T Consensus 200 ---~~~-----~l~~~~~d~~v~~~d~~~~~ 222 (311)
T d1nr0a1 200 ---DGS-----LFASTGGDGTIVLYNGVDGT 222 (311)
T ss_dssp ---TSS-----EEEEEETTSCEEEEETTTCC
T ss_pred ---ccc-----cccccccccccccccccccc
Confidence 444 49999999999999966543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.78 E-value=1.7e-18 Score=188.30 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=127.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.+....+.+++.++++|+.|++|++||+.+++++.++. +|.+.|++|+|+|+|+.||+|+.||+|++||+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~----------~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~ 255 (340)
T d1tbga_ 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----------GHESDINAICFFPNGNAFATGSDDATCRLFDL 255 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEeeeccccccceeEEeecCceEEEEECCCCcEEEEEe----------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEee
Confidence 45788999999999999999999999999999998884 46789999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+... .........|...|.+++|+| +|++|++| +.|++|+|||+ .++++++++.+|.+.|++++++|+|++
T Consensus 256 ~~~~---~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g---~~dg~i~iwd~--~~~~~~~~~~~H~~~V~~l~~s~d~~~ 326 (340)
T d1tbga_ 256 RADQ---ELMTYSHDNIICGITSVSFSK-SGRLLLAG---YDDFNCNVWDA--LKADRAGVLAGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp TTTE---EEEEECCTTCCSCEEEEEECS-SSCEEEEE---ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred cccc---cccccccccccCceEEEEECC-CCCEEEEE---ECCCEEEEEEC--CCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 8752 112233456778899999999 99999996 48999999998 578889999999999999999999998
Q ss_pred hhcc
Q 000080 2381 ALSK 2384 (2389)
Q Consensus 2381 ~~s~ 2384 (2389)
.+|-
T Consensus 327 l~s~ 330 (340)
T d1tbga_ 327 VATG 330 (340)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.77 E-value=4.2e-19 Score=203.25 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCc--eeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk--~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWD 2299 (2389)
|.+++|||||++||+|+.|++|+|||..+++ ++.+++ ||.+.|++|+|+|||++||||+.|++|++||
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~----------gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd 79 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK----------EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE----------CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec----------CCCCCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence 5888999999999999999999999998776 455553 5778999999999999999999999999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc--eEEEEeecCcEEEEeeccc
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~--v~sL~GH~~~V~svA~~~~ 2377 (2389)
++++. .++...+.+|...|.+++|+| +|+.||++ +.|++|++|++....... .....+|.+.|.+++++|+
T Consensus 80 ~~~~~---~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~---s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 80 LKGRT---WKPTLVILRINRAARCVRWAP-NEKKFAVG---SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152 (371)
T ss_dssp EETTE---EEEEEECCCCSSCEEEEEECT-TSSEEEEE---ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred ecccc---ccccccccccccccccccccc-ccccceee---cccCcceeeeeeccccccccccccccccccccccccccc
Confidence 98752 245566778999999999999 99999996 489999999984322211 3445679999999999999
Q ss_pred chhhhcc
Q 000080 2378 LNFALSK 2384 (2389)
Q Consensus 2378 ~~~~~s~ 2384 (2389)
|++.++-
T Consensus 153 ~~~l~s~ 159 (371)
T d1k8kc_ 153 SVLLAAG 159 (371)
T ss_dssp SSEEEEE
T ss_pred ccceecc
Confidence 9987764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.77 E-value=2.7e-18 Score=194.15 Aligned_cols=171 Identities=12% Similarity=0.031 Sum_probs=140.0
Q ss_pred ccceeeccccccccccccccCCCC----c--CceeEEEEEEcCCCCeEEEEeC--CCcEEEeecCCCceeeEecccCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPPAT----V--ENISTRAFSSHPLRPFFLVGSS--NTHIYLWEFGKDKATATYGVLPAAN 2264 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~at----v--~ni~VrsVAFsPdG~~LASGS~--DgTIRLWDl~tGk~l~Tl~vl~gh~ 2264 (2389)
.+.|+| +.|.+.++|+....... + +.-+|.+|+|+|++++|+++|. |..+++||+.+++.+.++.
T Consensus 71 ~~latg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~------ 143 (311)
T d1nr0a1 71 YYCASG-DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT------ 143 (311)
T ss_dssp SEEEEE-ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC------
T ss_pred CeEecc-ccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccc------
Confidence 356777 77888888877533211 1 1236799999999999999986 4569999999998877763
Q ss_pred CCCCCCCCCEEEEEECCCCC-EEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2265 VPPPYALASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2265 ~p~~GH~~~V~sVaFSPDG~-~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
+|...|++|+|+|+|+ .||+|+.||+|++||++++ +......+|...|.+++|+| +|++||+++ .|
T Consensus 144 ----~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-----~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~---~d 210 (311)
T d1nr0a1 144 ----GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-----KFKSTFGEHTKFVHSVRYNP-DGSLFASTG---GD 210 (311)
T ss_dssp ----CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-----EEEEEECCCSSCEEEEEECT-TSSEEEEEE---TT
T ss_pred ----ccccccccccccccceeeeccccccccccccccccc-----ccccccccccccccccccCc-ccccccccc---cc
Confidence 5678999999999997 5899999999999999975 46778889999999999999 999999974 89
Q ss_pred CeEEEeeCCCCCCCceEEE-------EeecCcEEEEeecccchhhhccc
Q 000080 2344 INVVVWDTLAPPTSSRASI-------TCHEGLYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL-------~GH~~~V~svA~~~~~~~~~s~~ 2385 (2389)
++|+|||. .+++.++.+ .+|.+.|++++++|+|++.++-+
T Consensus 211 ~~v~~~d~--~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs 257 (311)
T d1nr0a1 211 GTIVLYNG--VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257 (311)
T ss_dssp SCEEEEET--TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccc--ccccccccccccccccccccccccccccCCCCCEEEEEe
Confidence 99999998 345555554 46999999999999999988754
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.76 E-value=2.8e-18 Score=186.50 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=116.7
Q ss_pred cccccceeeccccccccccccccC--CCCc--CceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC
Q 000080 2190 GYAGIGASALGWETQDDFEDYVDP--PATV--ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265 (2389)
Q Consensus 2190 g~~~~~Asg~~~d~~~~~~~~~d~--~atv--~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~ 2265 (2389)
......++| +.+...++|+.... ..+. +.-.|.+|+|+|+|++||+|+.|++|++||+..++.+.++..
T Consensus 194 ~~~~~~~~~-~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~------ 266 (340)
T d1tbga_ 194 PDTRLFVSG-ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH------ 266 (340)
T ss_dssp TTSSEEEEE-ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------
T ss_pred cccceeEEe-ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc------
Confidence 344556666 66666666665321 1111 123569999999999999999999999999998888877641
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCe
Q 000080 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345 (2389)
Q Consensus 2266 p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~T 2345 (2389)
..|...|++++|+|+|+.|++|+.||+|++||+.++ +++.++.+|.+.|++++|+| ||++|||| |.|++
T Consensus 267 --~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~H~~~V~~l~~s~-d~~~l~s~---s~Dg~ 335 (340)
T d1tbga_ 267 --DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-----DRAGVLAGHDNRVSCLGVTD-DGMAVATG---SWDSF 335 (340)
T ss_dssp --TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECT-TSSCEEEE---ETTSC
T ss_pred --ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-----cEEEEEcCCCCCEEEEEEeC-CCCEEEEE---ccCCE
Confidence 235577999999999999999999999999999986 46788999999999999999 99999997 48999
Q ss_pred EEEee
Q 000080 2346 VVVWD 2350 (2389)
Q Consensus 2346 VrLWD 2350 (2389)
|+|||
T Consensus 336 v~iWd 340 (340)
T d1tbga_ 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.9e-18 Score=192.91 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=124.4
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.+|+|+|+|++||||+ ||+|+|||+.++.....+.... ..+|.+.|++|+|+|||++||+|+.||+|++||+
T Consensus 53 ~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~-----~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~ 126 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD-----CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE-----CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEee-----ecCCCCcEEEEEEcCCCCEEEEeecccccccccc
Confidence 458999999999999997 8899999998775433221110 1367899999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
.... .+....+.+|...+..++|+| ++.++|++ +.|++|++||+ .++++.....+|.+.|.+++++++|++
T Consensus 127 ~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~---~~d~~i~~~~~--~~~~~~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 127 AAPT---PRIKAELTSSAPACYALAISP-DSKVCFSC---CSDGNIAVWDL--HNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp CCC-----EEEEEEECSSSCEEEEEECT-TSSEEEEE---ETTSCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred cccc---ccccccccccccccccccccc-cccccccc---ccccccccccc--ccccccccccccccccccccccccccc
Confidence 8642 245667888999999999999 99999987 48999999998 466778889999999999999999988
Q ss_pred hhcc
Q 000080 2381 ALSK 2384 (2389)
Q Consensus 2381 ~~s~ 2384 (2389)
++.-
T Consensus 198 ~~~~ 201 (337)
T d1gxra_ 198 LWTG 201 (337)
T ss_dssp EEEE
T ss_pred cccc
Confidence 7653
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=4.6e-17 Score=186.23 Aligned_cols=209 Identities=13% Similarity=0.168 Sum_probs=146.1
Q ss_pred CcceeecCCCCCCeEEEEecCCcEEEEeCCCCccc-ccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE-ecCC
Q 000080 41 TSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQ-EEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA-ASEN 118 (2389)
Q Consensus 41 ~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~-~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA-SyDn 118 (2389)
...++|+|| | .++|+|+....|..| +...+ ++.+ +.+.+|.. +|.+++|+|+ +..||+ +.|+
T Consensus 10 It~~~~s~d--g-~~la~~~~~~~i~iw--~~~~~~~~~~------~~l~gH~~--~V~~l~fsp~---~~~l~s~s~D~ 73 (371)
T d1k8kc_ 10 ISCHAWNKD--R-TQIAICPNNHEVHIY--EKSGNKWVQV------HELKEHNG--QVTGVDWAPD---SNRIVTCGTDR 73 (371)
T ss_dssp CCEEEECTT--S-SEEEEECSSSEEEEE--EEETTEEEEE------EEEECCSS--CEEEEEEETT---TTEEEEEETTS
T ss_pred eEEEEECCC--C-CEEEEEeCCCEEEEE--ECCCCCEEEE------EEecCCCC--CEEEEEECCC---CCEEEEEECCC
Confidence 568999999 7 599999988888778 43222 1223 66778866 8999999997 555553 5689
Q ss_pred eEEEEeeCCCCCCCCccceeeEEec-ccceEEEEeecCCCCeEEEEecc--eEEeecc--CCcEEEEEEeeccccceEEE
Q 000080 119 CIFVFAHDSASSKGSFCWSQNAILV-QGTKVEAIEWTGSGDGIVAGGME--TVLWKKK--NTLWEIAWKFKENYPQNLVS 193 (2389)
Q Consensus 119 tIRVw~~d~~~~kgd~~W~~~~tL~-hssTV~sIAWSpdG~rLaSggdD--V~IW~~~--~s~Wecvwt~~~~~~~~ivs 193 (2389)
+|+||..+ ...|.+...+. |+..|.+++|+|+|++|++|+.| +++|... ...+.+.. ....|...+.+
T Consensus 74 ~i~vWd~~------~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~v~~ 146 (371)
T d1k8kc_ 74 NAYVWTLK------GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH-IKKPIRSTVLS 146 (371)
T ss_dssp CEEEEEEE------TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE-ECTTCCSCEEE
T ss_pred eEEEEeec------ccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccc-ccccccccccc
Confidence 99999876 22577766664 68899999999999999999887 8899743 33344443 34445667889
Q ss_pred EeecCCCc-eEeeecccccccCC---CCCCCceeE-EEee-CCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccC
Q 000080 194 ATWSIEGP-SATAASMSQLDLLG---PKEAGKCVF-ICCS-DGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQR 267 (2389)
Q Consensus 194 vaWSpdG~-fATag~dikf~~~~---~~~~~kpV~-V~~~-dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~ 267 (2389)
++|+|+|. ||||+.|..++.+. ......+.. .+.. ............|...|++++|+| ||..
T Consensus 147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------~g~~--- 215 (371)
T d1k8kc_ 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA--------NGSR--- 215 (371)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS--------SSSE---
T ss_pred ccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec--------cccc---
Confidence 99999999 99999865522221 000000000 0000 011123344578999999999999 5544
Q ss_pred ceEEeeecCCeEEEEEee
Q 000080 268 HVLLTCCLDGTVRLWCEM 285 (2389)
Q Consensus 268 nILAScSdDgTVRLW~e~ 285 (2389)
|||++.||+|+||+..
T Consensus 216 --l~s~~~d~~i~iwd~~ 231 (371)
T d1k8kc_ 216 --VAWVSHDSTVCLADAD 231 (371)
T ss_dssp --EEEEETTTEEEEEEGG
T ss_pred --ccccccCCcceEEeee
Confidence 9999999999999964
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=7.5e-17 Score=181.99 Aligned_cols=223 Identities=16% Similarity=0.182 Sum_probs=150.7
Q ss_pred ccccccccCCCCCCCc---ceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEc
Q 000080 27 FLRSEFIPTAPTRSTS---TIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWS 103 (2389)
Q Consensus 27 ~~~~~~ip~ap~~~~~---ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWS 103 (2389)
+.+..++||.|.+.|+ .++|.|+ | ..+|||+|..++|+.++......... ..+.+|.. ..|++|+||
T Consensus 3 ~~l~~~~p~~p~t~~~~~t~l~~~~~--~-~~la~~~~~~~~i~~~~~~~~~~~~~------~~~~gh~~-~~v~~v~fs 72 (325)
T d1pgua1 3 ISLKEIIPPQPSTQRNFTTHLSYDPT--T-NAIAYPCGKSAFVRCLDDGDSKVPPV------VQFTGHGS-SVVTTVKFS 72 (325)
T ss_dssp EEEEEEECCCCCCCTTCCCCCEEETT--T-TEEEEEETTEEEEEECCSSCCSSCSE------EEECTTTT-SCEEEEEEC
T ss_pred cccccccCCcCCCCCCCeEEEEECCC--C-CEEEEEeCCCEEEEEEeCCCCCccce------EEEeCCCC-CCEEEEEEe
Confidence 3456789999999887 5778887 7 58999999999998876644444444 55566532 479999999
Q ss_pred CCCCCCCcEEE--ecCCeEEEEeeCCCCCCCCccceeeEEe-cccceEEEEeecCCCCeEEEEecc----eEEeeccCCc
Q 000080 104 PETPSIGQLAA--ASENCIFVFAHDSASSKGSFCWSQNAIL-VQGTKVEAIEWTGSGDGIVAGGME----TVLWKKKNTL 176 (2389)
Q Consensus 104 Pd~~~~GeIaA--SyDntIRVw~~d~~~~kgd~~W~~~~tL-~hssTV~sIAWSpdG~rLaSggdD----V~IW~~~~s~ 176 (2389)
|+ ..|.++| +.|++||||.-................. .+.+.|.+++|+++|++|++++.+ +.+|+..++
T Consensus 73 P~--~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~- 149 (325)
T d1pgua1 73 PI--KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG- 149 (325)
T ss_dssp SS--TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-
T ss_pred eC--CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc-
Confidence 94 2345554 4689999996541100111111112222 378899999999999999987753 677775443
Q ss_pred EEEEEEeeccccceEEEEeecCCCc--eEeeecccccccCCCCCCCceeEEEeeCCCcccee---ecccCCCCeeEEEec
Q 000080 177 WEIAWKFKENYPQNLVSATWSIEGP--SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIK---LELCHPQPVSMVQWR 251 (2389)
Q Consensus 177 Wecvwt~~~~~~~~ivsvaWSpdG~--fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~---ve~aH~qdVn~V~W~ 251 (2389)
+++.++. .|...+.+++|+|++. ++|++.+.. +.+|... ...... ....|...|.+++|+
T Consensus 150 -~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~------------v~~~d~~-~~~~~~~~~~~~~~~~~v~~v~~~ 214 (325)
T d1pgua1 150 -NSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGS------------VVFYQGP-PFKFSASDRTHHKQGSFVRDVEFS 214 (325)
T ss_dssp -CEEEECC-SCSSCEEEEEECSSSSCEEEEEETTTE------------EEEEETT-TBEEEEEECSSSCTTCCEEEEEEC
T ss_pred -ccceeee-ecccccccccccccccceEEEeecccc------------ccccccc-ccccceecccccCCCCccEEeeec
Confidence 4565554 3667788999999987 567776643 2233211 111111 246789999999999
Q ss_pred cCCCCCCCCCCccccCceEEeeecCCeEEEEEeecCCcc
Q 000080 252 PSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKT 290 (2389)
Q Consensus 252 Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d~Gk~ 290 (2389)
| | ..++|+||+.||+|+||+. .+|+.
T Consensus 215 p--------d----~~~~l~s~~~d~~i~iwd~-~~~~~ 240 (325)
T d1pgua1 215 P--------D----SGEFVITVGSDRKISCFDG-KSGEF 240 (325)
T ss_dssp S--------T----TCCEEEEEETTCCEEEEET-TTCCE
T ss_pred c--------c----cceeccccccccceeeeee-ccccc
Confidence 9 3 2346999999999999983 34443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=1.4e-17 Score=177.06 Aligned_cols=143 Identities=19% Similarity=0.284 Sum_probs=129.5
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.+|+|||++++|||||.||+|||||+.+++++.++. +|...|++++|+|+|..+++++.++++..|+.
T Consensus 19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~----------~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK----------GHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC----------CCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe----------CCCCcEEEEeeecccccccccccccccccccc
Confidence 46999999999999999999999999999999999884 46789999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
... +....+.+|...+.++.|+| +++.++++ +.|+++++||+ .+++.++.+.+|...+.+++++++|++
T Consensus 89 ~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (317)
T d1vyhc1 89 QGF-----ECIRTMHGHDHNVSSVSIMP-NGDHIVSA---SRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTL 157 (317)
T ss_dssp TSS-----CEEECCCCCSSCEEEEEECS-SSSEEEEE---ETTSEEEEEET--TTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred ccc-----ccccccccccccceeeeccC-CCceEEee---ccCcceeEeec--ccceeeeEEccCCCcceeeecccCCCE
Confidence 875 34566778999999999999 89999987 48999999998 567789999999999999999999998
Q ss_pred hhcc
Q 000080 2381 ALSK 2384 (2389)
Q Consensus 2381 ~~s~ 2384 (2389)
.++-
T Consensus 158 l~~~ 161 (317)
T d1vyhc1 158 IASC 161 (317)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7753
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.74 E-value=1.3e-17 Score=181.82 Aligned_cols=148 Identities=13% Similarity=0.159 Sum_probs=115.6
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.+..++|+|++++|++|+.|++|++||+.+++...... .+|...|++++|+|+|++|++++.|++|++||+
T Consensus 138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~ 208 (299)
T d1nr0a2 138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT---------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 208 (299)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE---------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred cccccccccccccccccccccccccccccccccccccc---------ccccccccccccccccccccccccccccccccc
Confidence 45889999999999999999999999998777544322 135688999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec-CcEEEEeecccch
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-GLYDLFLPLKLLN 2379 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~-~~V~svA~~~~~~ 2379 (2389)
.++. .......+.+|...|++++|+| +|++||++ +.|++|+|||+.......+.....|. ..+.++ .+++++
T Consensus 209 ~~~~--~~~~~~~~~~h~~~v~~l~~s~-~~~~l~sg---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 281 (299)
T d1nr0a2 209 ANNF--ELAHTNSWTFHTAKVACVSWSP-DNVRLATG---SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNET 281 (299)
T ss_dssp GGTT--EESCCCCCCCCSSCEEEEEECT-TSSEEEEE---ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETT
T ss_pred cccc--cccccccccccccccccccccc-cccceEEE---cCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCC
Confidence 8763 2244567788999999999999 99999997 48999999998432223333334444 455555 456677
Q ss_pred hhhcc
Q 000080 2380 FALSK 2384 (2389)
Q Consensus 2380 ~~~s~ 2384 (2389)
++++-
T Consensus 282 ~l~s~ 286 (299)
T d1nr0a2 282 TIVSA 286 (299)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77653
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=8.7e-17 Score=180.82 Aligned_cols=141 Identities=9% Similarity=0.064 Sum_probs=124.8
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl 2300 (2389)
.|.+++|+|++..+++|+.|++|++||+.+++.+.++. |...|.+++|+|+|+.|++|+.|+.|++||+
T Consensus 185 ~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-----------~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~ 253 (337)
T d1gxra_ 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-----------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ccccccccccccccccccccccccccccccceeecccc-----------cccceEEEEEcccccccceeccccccccccc
Confidence 56999999999999999999999999999999888773 4578999999999999999999999999999
Q ss_pred CCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchh
Q 000080 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~ 2380 (2389)
+++. .....+|...|.+++|+| +|++|||+ +.|++|+|||+ .+++.+..+. |.+.|.+++++|+|++
T Consensus 254 ~~~~------~~~~~~~~~~i~~v~~s~-~g~~l~s~---s~Dg~i~iwd~--~~~~~~~~~~-~~~~v~~~~~s~d~~~ 320 (337)
T d1gxra_ 254 NKPD------KYQLHLHESCVLSLKFAY-CGKWFVST---GKDNLLNAWRT--PYGASIFQSK-ESSSVLSCDISVDDKY 320 (337)
T ss_dssp TSSC------EEEECCCSSCEEEEEECT-TSSEEEEE---ETTSEEEEEET--TTCCEEEEEE-CSSCEEEEEECTTSCE
T ss_pred cccc------cccccccccccceEEECC-CCCEEEEE---eCCCeEEEEEC--CCCCEEEEcc-CCCCEEEEEEeCCCCE
Confidence 9752 345678999999999999 99999997 48999999998 5677776654 8999999999999998
Q ss_pred hhccc
Q 000080 2381 ALSKC 2385 (2389)
Q Consensus 2381 ~~s~~ 2385 (2389)
.++-+
T Consensus 321 l~t~s 325 (337)
T d1gxra_ 321 IVTGS 325 (337)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87643
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=6.5e-17 Score=181.40 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=119.8
Q ss_pred EEEEEc-CCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2223 RAFSSH-PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2223 rsVAFs-PdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
..+.++ +++++|++|+.|++|++||..+++.+.++.. ......+|.+.|++++|+|+|++||+|+.||+|++||+.
T Consensus 208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 284 (388)
T d1erja_ 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS---ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284 (388)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc---ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence 344555 5899999999999999999999998877642 111235788999999999999999999999999999998
Q ss_pred CCCcc-------CcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee
Q 000080 2302 VGGRS-------NVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP 2374 (2389)
Q Consensus 2302 tggrs-------~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~ 2374 (2389)
++... ..........|...|.+++|+| +|++||+| +.|++|+|||+ .++++++++++|++.|.+++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg---~~dg~i~vwd~--~~~~~~~~l~~H~~~V~~~~~ 358 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG---SKDRGVLFWDK--KSGNPLLMLQGHRNSVISVAV 358 (388)
T ss_dssp --------------CEEEEEECCSSCEEEEEECG-GGCEEEEE---ETTSEEEEEET--TTCCEEEEEECCSSCEEEEEE
T ss_pred CCccccccccccccceeeecccccceEEEEEECC-CCCEEEEE---eCCCEEEEEEC--CCCcEEEEEeCCCCCEEEEEE
Confidence 75210 0123455677999999999999 99999997 48999999998 578899999999999999975
Q ss_pred ------cccchhhhc
Q 000080 2375 ------LKLLNFALS 2383 (2389)
Q Consensus 2375 ------~~~~~~~~s 2383 (2389)
+|+|+..+|
T Consensus 359 ~~~~~~spd~~~l~s 373 (388)
T d1erja_ 359 ANGSSLGPEYNVFAT 373 (388)
T ss_dssp CSSCTTCTTCEEEEE
T ss_pred ecCcccCCCCCEEEE
Confidence 556776665
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=9.3e-17 Score=180.10 Aligned_cols=152 Identities=14% Similarity=0.204 Sum_probs=120.0
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCC--------CCCCCCCCCCEEEEEECCCCCEEEEEeCC
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA--------NVPPPYALASISALQFDHYGHRFASAALD 2292 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh--------~~p~~GH~~~V~sVaFSPDG~~LASgS~D 2292 (2389)
.|++|+|+|||++||||+ |++|+|||+.+|+++.++...... ....++|...|++|+|+|||++||+|+.|
T Consensus 64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d 142 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142 (388)
T ss_dssp CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred cEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccc
Confidence 358999999999999987 889999999999988776421000 01134677889999999999999999999
Q ss_pred CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEE
Q 000080 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLF 2372 (2389)
Q Consensus 2293 gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~sv 2372 (2389)
|+|++||..++ +......+|...|.+++|++ ++..++++ +.|+.|++||. .+...+.....|...+...
T Consensus 143 g~v~i~~~~~~-----~~~~~~~~h~~~v~~~~~~~-~~~~~~~~---~~~~~i~~~d~--~~~~~~~~~~~~~~~~~~~ 211 (388)
T d1erja_ 143 RLIRIWDIENR-----KIVMILQGHEQDIYSLDYFP-SGDKLVSG---SGDRTVRIWDL--RTGQCSLTLSIEDGVTTVA 211 (388)
T ss_dssp SCEEEEETTTT-----EEEEEECCCSSCEEEEEECT-TSSEEEEE---ETTSEEEEEET--TTTEEEEEEECSSCEEEEE
T ss_pred ccccccccccc-----cccccccccccccccccccc-cccccccc---ccceeeeeeec--ccccccccccccccccccc
Confidence 99999999976 46777889999999999999 88999886 48999999997 3445566666666655555
Q ss_pred eecccchhhhcc
Q 000080 2373 LPLKLLNFALSK 2384 (2389)
Q Consensus 2373 A~~~~~~~~~s~ 2384 (2389)
...++|+++++-
T Consensus 212 ~~~~~~~~l~~~ 223 (388)
T d1erja_ 212 VSPGDGKYIAAG 223 (388)
T ss_dssp ECSTTCCEEEEE
T ss_pred ccCCCCCeEEEE
Confidence 555677777654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=7e-17 Score=172.90 Aligned_cols=74 Identities=9% Similarity=0.086 Sum_probs=61.9
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC-CEEEEEeCCCcEEEeeC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTWQL 2300 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG-~~LASgS~DgTVkLWDl 2300 (2389)
|++|+|+|+|++|||||.||+|||||+.+++....+... .+|.+.|.+|+|+|++ +.|++|+.||+|++|++
T Consensus 14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-------~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~ 86 (342)
T d1yfqa_ 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-------LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-------EECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe-------cCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence 599999999999999999999999999877654443211 2467899999999875 68999999999999988
Q ss_pred CC
Q 000080 2301 EV 2302 (2389)
Q Consensus 2301 ~t 2302 (2389)
..
T Consensus 87 ~~ 88 (342)
T d1yfqa_ 87 IG 88 (342)
T ss_dssp SS
T ss_pred cc
Confidence 65
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.67 E-value=3.8e-15 Score=162.22 Aligned_cols=209 Identities=16% Similarity=0.214 Sum_probs=144.8
Q ss_pred ccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeee-eccCCCCCeeEEEEcCCCCCCCc
Q 000080 33 IPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVF-ALSDNSLPVTSISWSPETPSIGQ 111 (2389)
Q Consensus 33 ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qvi-egh~d~~dVk~VaWSPd~~~~Ge 111 (2389)
+.-+|+....+++|+|| | .++|.|+.+..|..| +...+ +.. +.+ ++|.+ .|++++|+|+ |.
T Consensus 7 ~~~GH~~~V~~l~~s~d--g-~~l~s~s~Dg~v~vW--d~~~~-~~~------~~~~~~h~~--~v~~v~~~~~----g~ 68 (299)
T d1nr0a2 7 VRYGHNKAITALSSSAD--G-KTLFSADAEGHINSW--DISTG-ISN------RVFPDVHAT--MITGIKTTSK----GD 68 (299)
T ss_dssp EECCCSSCEEEEEECTT--S-SEEEEEETTSCEEEE--ETTTC-CEE------ECSSCSCSS--CEEEEEECTT----SC
T ss_pred EcCCCCCCcEEEEECCC--C-CEEEEEcCCCeEEEE--ECCCC-cEE------EEEcCCCCC--cEEEEEeecc----ce
Confidence 45689999999999998 7 589999988888888 53333 222 334 45655 8999999997 55
Q ss_pred EE-EecCCeEEEEeeCCCC---------------------CCCCc----------ccee--eEEecccceEEEEeecCCC
Q 000080 112 LA-AASENCIFVFAHDSAS---------------------SKGSF----------CWSQ--NAILVQGTKVEAIEWTGSG 157 (2389)
Q Consensus 112 Ia-ASyDntIRVw~~d~~~---------------------~kgd~----------~W~~--~~tL~hssTV~sIAWSpdG 157 (2389)
++ +++|++|++|...... ..+.+ -|.. .........+..++|+|+|
T Consensus 69 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~ 148 (299)
T d1nr0a2 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK 148 (299)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS
T ss_pred eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55 5789999999743100 00000 0000 0011134567889999999
Q ss_pred CeEEEEecc--eEEeeccCCcEEEEEEeeccccceEEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccc
Q 000080 158 DGIVAGGME--TVLWKKKNTLWEIAWKFKENYPQNLVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEY 234 (2389)
Q Consensus 158 ~rLaSggdD--V~IW~~~~s~Wecvwt~~~~~~~~ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~ 234 (2389)
++|++|+.| +.+|+..+.....+.. ..|+..+.+++|+|+|. +|+++.+.+ +.+|........
T Consensus 149 ~~l~~g~~dg~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~------------i~~~~~~~~~~~ 214 (299)
T d1nr0a2 149 QFVAVGGQDSKVHVYKLSGASVSEVKT--IVHPAEITSVAFSNNGAFLVATDQSRK------------VIPYSVANNFEL 214 (299)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEE--EECSSCEEEEEECTTSSEEEEEETTSC------------EEEEEGGGTTEE
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccc------------cccccccccccc
Confidence 999998887 8899876665544432 34667788999999999 999888644 334432211111
Q ss_pred --eeecccCCCCeeEEEeccCCCCCCCCCCccccCceEEeeecCCeEEEEEeec
Q 000080 235 --IKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMD 286 (2389)
Q Consensus 235 --~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nILAScSdDgTVRLW~e~d 286 (2389)
......|..+|++++|+| |++. |||+|.||+|+||+...
T Consensus 215 ~~~~~~~~h~~~v~~l~~s~--------~~~~-----l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 215 AHTNSWTFHTAKVACVSWSP--------DNVR-----LATGSLDNSVIVWNMNK 255 (299)
T ss_dssp SCCCCCCCCSSCEEEEEECT--------TSSE-----EEEEETTSCEEEEETTC
T ss_pred cccccccccccccccccccc--------cccc-----eEEEcCCCEEEEEECCC
Confidence 223567999999999999 5554 99999999999999654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=4.2e-16 Score=179.57 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=115.8
Q ss_pred eEEEEEEcCC-----CCeEEEEeCCCcEEEeecCCCce-e----------eEecccCCCCCCCCCCCCCEEEEEECCCCC
Q 000080 2221 STRAFSSHPL-----RPFFLVGSSNTHIYLWEFGKDKA-T----------ATYGVLPAANVPPPYALASISALQFDHYGH 2284 (2389)
Q Consensus 2221 ~VrsVAFsPd-----G~~LASGS~DgTIRLWDl~tGk~-l----------~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~ 2284 (2389)
.++++++.++ +.++++++.||+|++||+..... . ..+.. .......+...+.+|+|+|||
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~s~dg- 196 (393)
T d1sq9a_ 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG---TVESPMTPSQFATSVDISERG- 196 (393)
T ss_dssp CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE---EECCSSSSCCCCCEEEECTTS-
T ss_pred ceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceeccc---ceecccCCCCcEEEEEECCCC-
Confidence 4577888876 46899999999999999742211 0 00000 000123455779999999998
Q ss_pred EEEEEeCCCcEEEeeCCCCCcc-CcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCC---eEEEeeCCCCCCCceE
Q 000080 2285 RFASAALDGTVCTWQLEVGGRS-NVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI---NVVVWDTLAPPTSSRA 2360 (2389)
Q Consensus 2285 ~LASgS~DgTVkLWDl~tggrs-~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~---TVrLWD~l~~tg~~v~ 2360 (2389)
+||||+.||+|+|||++++... ...+..++.+|...|++|+|+| ||++||+|| .|+ .|+|||+ .++++++
T Consensus 197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs---~D~t~~~i~lwd~--~~g~~~~ 270 (393)
T d1sq9a_ 197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAH---DSNSFGCITLYET--EFGERIG 270 (393)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEE---EETTEEEEEEEET--TTCCEEE
T ss_pred EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeec---CCCCcceeeeccc--ccceeee
Confidence 9999999999999999986210 0122345678999999999999 999999975 665 5999998 5677777
Q ss_pred EEE-------------eecCcEEEEeecccchhhhcccc
Q 000080 2361 SIT-------------CHEGLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2361 sL~-------------GH~~~V~svA~~~~~~~~~s~~~ 2386 (2389)
+|. ||.+.|++++++|+|++.+|-+.
T Consensus 271 ~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~ 309 (393)
T d1sq9a_ 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309 (393)
T ss_dssp EECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred eeccccccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence 774 89999999999999999988653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1.5e-16 Score=179.52 Aligned_cols=181 Identities=11% Similarity=-0.061 Sum_probs=140.1
Q ss_pred ccccccccccceeeccccccccccccccCC--CC----------cCceeEEEEEEcCCCCeEEEEe--CCCcEEEeecCC
Q 000080 2185 AFGIPGYAGIGASALGWETQDDFEDYVDPP--AT----------VENISTRAFSSHPLRPFFLVGS--SNTHIYLWEFGK 2250 (2389)
Q Consensus 2185 ~~~~~g~~~~~Asg~~~d~~~~~~~~~d~~--at----------v~ni~VrsVAFsPdG~~LASGS--~DgTIRLWDl~t 2250 (2389)
+|.-.+.+.+.|+| +.|.+.++|+..... .. ....+|.+|+|+|+|++|++++ .|+.+++|++.+
T Consensus 70 ~fsP~~~g~~lasg-s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~ 148 (325)
T d1pgua1 70 KFSPIKGSQYLCSG-DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 148 (325)
T ss_dssp EECSSTTCCEEEEE-ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT
T ss_pred EEeeCCCCCEEEEE-eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc
Confidence 44333445577888 888888888774211 11 1123679999999999988776 477899999999
Q ss_pred CceeeEecccCCCCCCCCCCCCCEEEEEECCCCC-EEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecC
Q 000080 2251 DKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS 2329 (2389)
Q Consensus 2251 Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~-~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~ 2329 (2389)
++++.++. +|...|++++|+|+++ ++++++.|++|++||+.++. .........+|...|.+++|+|+
T Consensus 149 ~~~~~~~~----------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd 216 (325)
T d1pgua1 149 GNSLGEVS----------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPD 216 (325)
T ss_dssp CCEEEECC----------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECST
T ss_pred cccceeee----------ecccccccccccccccceEEEeecccccccccccccc--cceecccccCCCCccEEeeeccc
Confidence 99988874 4678999999999986 47889999999999998752 22344556678899999999996
Q ss_pred CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeec---ccchhhhc
Q 000080 2330 SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPL---KLLNFALS 2383 (2389)
Q Consensus 2330 DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~---~~~~~~~s 2383 (2389)
.|.+||++| .|++|+|||+ .+++++++|.+|...+.++.++ ++|++.++
T Consensus 217 ~~~~l~s~~---~d~~i~iwd~--~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s 268 (325)
T d1pgua1 217 SGEFVITVG---SDRKISCFDG--KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT 268 (325)
T ss_dssp TCCEEEEEE---TTCCEEEEET--TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred cceeccccc---cccceeeeee--ccccccccccccccccccceeeeeccCCCEEEE
Confidence 689999874 8999999998 5778899999999888655444 57776665
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=4.3e-16 Score=169.18 Aligned_cols=113 Identities=12% Similarity=0.252 Sum_probs=96.9
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCC----------CEEEEEe
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG----------HRFASAA 2290 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG----------~~LASgS 2290 (2389)
.|.+++|+|+|++|++|+.||+|++||+.+++.+.... .+|...|.+++|+|++ ++||||+
T Consensus 164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---------~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs 234 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW---------AFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234 (287)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS---------CCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred ceeEEEeccCccccccccccccccceeecccccccccc---------cccccccceeeecccccccccccCCCCeeEeec
Confidence 46999999999999999999999999999888654421 3577899999998754 6899999
Q ss_pred CCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
.|++|++||+++++ +.+..+.+|...|++++|+| ++ .|+|+| .|++|||||+
T Consensus 235 ~D~~i~iw~~~~~~----~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g---~D~~v~iW~i 286 (287)
T d1pgua2 235 LDTNIFIYSVKRPM----KIIKALNAHKDGVNNLLWET-PS-TLVSSG---ADACIKRWNV 286 (287)
T ss_dssp TTSCEEEEESSCTT----CCEEETTSSTTCEEEEEEEE-TT-EEEEEE---TTSCEEEEEE
T ss_pred CCCeEEEEECCCCC----eEEEEeCCCCCCeEEEEECC-CC-EEEEEE---CCCeEEEEEE
Confidence 99999999998753 46777889999999999999 76 477764 7999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7.9e-16 Score=165.68 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=121.9
Q ss_pred ccceeeccccccccccccccC--CCCcCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDP--PATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA 2270 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~--~atv~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH 2270 (2389)
...+.+ +.+...++++.... ..+...-......+++++.+|++|+.|++|++||+.+++++.++. +|
T Consensus 148 ~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~----------~~ 216 (342)
T d2ovrb2 148 RRVVSG-AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT----------GH 216 (342)
T ss_dssp SCEEEE-ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC----------CC
T ss_pred ceeeee-cCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEec----------cc
Confidence 344444 45555555554211 111111112345677789999999999999999999999988873 45
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEee
Q 000080 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2271 ~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD 2350 (2389)
...|.++++++ ++||+|+.||+|++||+.... ....+.....|...+.+++|++ +++++| +.|++|+|||
T Consensus 217 ~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~s~---s~Dg~i~iwd 286 (342)
T d2ovrb2 217 QSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFNK---NFVITS---SDDGTVKLWD 286 (342)
T ss_dssp CSCEEEEEEET--TEEEEEETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEECS---SEEEEE---ETTSEEEEEE
T ss_pred ccceeEEecCC--CEEEEEcCCCEEEEEeccccc--ccccccccceeeeceeecccCC---CeeEEE---cCCCEEEEEE
Confidence 68898887764 699999999999999998762 1123333344666777776665 789987 4899999999
Q ss_pred CCCCCCCceEEEE-----eecCcEEEEeecccchhhhc
Q 000080 2351 TLAPPTSSRASIT-----CHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2351 ~l~~tg~~v~sL~-----GH~~~V~svA~~~~~~~~~s 2383 (2389)
+ .++++++.+. +|.+.|++++++|+|+++.+
T Consensus 287 ~--~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~ 322 (342)
T d2ovrb2 287 L--KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322 (342)
T ss_dssp T--TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred C--CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence 8 5788888885 58888999999999988665
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1.4e-15 Score=164.57 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=122.1
Q ss_pred ccceeeccccccccccccccCC--CC--cCceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCC
Q 000080 2193 GIGASALGWETQDDFEDYVDPP--AT--VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268 (2389)
Q Consensus 2193 ~~~Asg~~~d~~~~~~~~~d~~--at--v~ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~ 2268 (2389)
.+.+.+ ..+...++|+..... .. .....+.++.|+|+++++++|+.|++|++||..+++++..+.
T Consensus 172 ~~~~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------- 240 (355)
T d1nexb2 172 NIVVSG-SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ---------- 240 (355)
T ss_dssp TEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC----------
T ss_pred ceeeee-cccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc----------
Confidence 344555 555555555542111 01 112345889999999999999999999999999999988874
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEE
Q 000080 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2389)
Q Consensus 2269 GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrL 2348 (2389)
+|...|++++|+| +.|++|+.||+|++||++++. ..+.+|...+.++++.++++++|+++ .|++|+|
T Consensus 241 ~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~g----~d~~i~v 307 (355)
T d1nexb2 241 GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS-------RKFSYHHTNLSAITTFYVSDNILVSG----SENQFNI 307 (355)
T ss_dssp CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC-------EEEEEECTTCCCCCEEEECSSEEEEE----ETTEEEE
T ss_pred ccccccccccccc--ceeeeeecccccccccccccc-------eecccccCCceEEEEEcCCCCEEEEE----eCCEEEE
Confidence 4678899999975 699999999999999998752 34556777888766554488888764 4889999
Q ss_pred eeCCCCCCCceE-EEEeecCcEEEEeecccc
Q 000080 2349 WDTLAPPTSSRA-SITCHEGLYDLFLPLKLL 2378 (2389)
Q Consensus 2349 WD~l~~tg~~v~-sL~GH~~~V~svA~~~~~ 2378 (2389)
||+ .++++++ .+.+|.+.|++++++++.
T Consensus 308 wd~--~tg~~~~~~~~~~~~~V~~v~~~~~~ 336 (355)
T d1nexb2 308 YNL--RSGKLVHANILKDADQIWSVNFKGKT 336 (355)
T ss_dssp EET--TTCCBCCSCTTTTCSEEEEEEEETTE
T ss_pred EEC--CCCCEEEEEecCCCCCEEEEEEcCCe
Confidence 998 5778875 578999999999998863
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=3.6e-15 Score=161.88 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=113.2
Q ss_pred EEEEcCCCCeEEEEeCCC-cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2224 AFSSHPLRPFFLVGSSNT-HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS~Dg-TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
..+++|++..++.|+.|+ .|++|++.+.+....+. ..|...|++|+|+|||++||+|+.||+|++||+.+
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 193 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK---------TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 193 (287)
T ss_dssp EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS---------SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eeeeeccCcceeeeccccceeeeeeccccceeeeee---------eccCCceeEEEeccCccccccccccccccceeecc
Confidence 347889999888888765 79999997666554442 12567899999999999999999999999999987
Q ss_pred CCccCcccceeeeecCCCeeEEEEecC---------CCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEe
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITS---------SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFL 2373 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~---------DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA 2373 (2389)
+. .....+.+|...|.+++|+|. ++.+|||| +.|++|+|||+. ...+.++.+.+|.+.|++++
T Consensus 194 ~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg---s~D~~i~iw~~~-~~~~~~~~~~~h~~~V~~v~ 265 (287)
T d1pgua2 194 RE----VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG---SLDTNIFIYSVK-RPMKIIKALNAHKDGVNNLL 265 (287)
T ss_dssp TE----EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE---ETTSCEEEEESS-CTTCCEEETTSSTTCEEEEE
T ss_pred cc----cccccccccccccceeeecccccccccccCCCCeeEee---cCCCeEEEEECC-CCCeEEEEeCCCCCCeEEEE
Confidence 62 233446789999999999872 45789987 589999999984 23566888899999999999
Q ss_pred ecccchh
Q 000080 2374 PLKLLNF 2380 (2389)
Q Consensus 2374 ~~~~~~~ 2380 (2389)
+++++..
T Consensus 266 ~~~~~~l 272 (287)
T d1pgua2 266 WETPSTL 272 (287)
T ss_dssp EEETTEE
T ss_pred ECCCCEE
Confidence 9998753
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.60 E-value=2.5e-15 Score=165.33 Aligned_cols=134 Identities=8% Similarity=-0.013 Sum_probs=115.1
Q ss_pred EEEcC-CCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC--cEEEeeCC
Q 000080 2225 FSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--TVCTWQLE 2301 (2389)
Q Consensus 2225 VAFsP-dG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg--TVkLWDl~ 2301 (2389)
-.||| ||+++|+++. +.|++||...|+.++. +|...|++++|||||++|++++.|+ +|++||++
T Consensus 8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~------------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~ 74 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV------------PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR 74 (360)
T ss_dssp EEEEECGGGCEEEEET-TEEEEECTTSSBEEEC------------SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT
T ss_pred ccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc------------cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC
Confidence 47999 9999999875 6999999987776542 2567899999999999999887664 89999999
Q ss_pred CCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhh
Q 000080 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2302 tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~ 2381 (2389)
++ ....+..|...|.+++|+| ||++||++ +.|+++++||+ .++++...+..|...+.+++++|+|+++
T Consensus 75 ~~------~~~~~~~~~~~v~~~~~sp-dg~~l~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~spdg~~l 142 (360)
T d1k32a3 75 TG------KAEKFEENLGNVFAMGVDR-NGKFAVVA---NDRFEIMTVDL--ETGKPTVIERSREAMITDFTISDNSRFI 142 (360)
T ss_dssp TC------CEEECCCCCCSEEEEEECT-TSSEEEEE---ETTSEEEEEET--TTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred CC------cEEEeeCCCceEEeeeecc-ccccccee---ccccccccccc--cccceeeeeecccccccchhhccceeee
Confidence 75 2456778999999999999 99999997 48999999998 5677788999999999999999999987
Q ss_pred hc
Q 000080 2382 LS 2383 (2389)
Q Consensus 2382 ~s 2383 (2389)
+.
T Consensus 143 a~ 144 (360)
T d1k32a3 143 AY 144 (360)
T ss_dssp EE
T ss_pred ee
Confidence 63
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.8e-14 Score=149.09 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=105.2
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
|.+ +++||++|||||.||+|||||+.++++++++. ||.+.|++|+| ||++|+||+.|++|++|++.
T Consensus 18 V~c--~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~----------~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 18 VYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILT----------GHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp EEE--EECCSSEEEEEESSSCEEEEESSSCCEEEEEC----------CCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EEE--EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEe----------cCCCCEeeeec--ccceeecccccccccccccc
Confidence 355 45689999999999999999999999999984 57789999887 68899999999999999997
Q ss_pred CCCc--------------------------------------cCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCC
Q 000080 2302 VGGR--------------------------------------SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG 2343 (2389)
Q Consensus 2302 tggr--------------------------------------s~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D 2343 (2389)
.+.. ........+..|...|..+.+.+ ..++++ +.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~---s~d 157 (293)
T d1p22a2 84 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSA---SGD 157 (293)
T ss_dssp SCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEE---ETT
T ss_pred cccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccc---cCC
Confidence 7521 00111233456777777777776 456665 489
Q ss_pred CeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2344 INVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2344 ~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
++|++||+ .+++.+..+.+|...+..+++++
T Consensus 158 ~~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~~ 188 (293)
T d1p22a2 158 RTIKVWNT--STCEFVRTLNGHKRGIACLQYRD 188 (293)
T ss_dssp SEEEEEET--TTCCEEEEEECCSSCEEEEEEET
T ss_pred CceeeecC--CCCcEEEEEcccccccccccCCC
Confidence 99999998 46778899999999999888764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.56 E-value=1.1e-14 Score=160.05 Aligned_cols=144 Identities=13% Similarity=0.009 Sum_probs=117.7
Q ss_pred eeEEEEEEcCCCCeEEEEeCCC--cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 000080 2220 ISTRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LASGS~Dg--TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkL 2297 (2389)
..|++++|+|||++|+++|.|. +|++||..+|+..+.. +|...|.+++|||||++|++++.|+++++
T Consensus 43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~-----------~~~~~v~~~~~spdg~~l~~~~~~~~~~~ 111 (360)
T d1k32a3 43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-----------ENLGNVFAMGVDRNGKFAVVANDRFEIMT 111 (360)
T ss_dssp SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-----------CCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee-----------CCCceEEeeeecccccccceecccccccc
Confidence 3569999999999998877553 8999999888765432 35688999999999999999999999999
Q ss_pred eeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEee-------cCCCCCeEEEeeCCCCCCCceEEEEeecCcEE
Q 000080 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAG-------HSSNGINVVVWDTLAPPTSSRASITCHEGLYD 2370 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG-------~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~ 2370 (2389)
|+++++ +....+..|...+.+++|+| ||++||.++ .+..++++++||+ . ......+..|...+.
T Consensus 112 ~~~~~~-----~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~--~-~~~~~~~~~~~~~~~ 182 (360)
T d1k32a3 112 VDLETG-----KPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDM--E-GRKIFAATTENSHDY 182 (360)
T ss_dssp EETTTC-----CEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEET--T-TTEEEECSCSSSBEE
T ss_pred cccccc-----ceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeecc--c-cCceeeecccccccc
Confidence 999986 35566778999999999999 999999643 1245678999997 2 344556667888999
Q ss_pred EEeecccchhhhc
Q 000080 2371 LFLPLKLLNFALS 2383 (2389)
Q Consensus 2371 svA~~~~~~~~~s 2383 (2389)
+++++|+|+++++
T Consensus 183 ~~~~spdg~~l~~ 195 (360)
T d1k32a3 183 APAFDADSKNLYY 195 (360)
T ss_dssp EEEECTTSCEEEE
T ss_pred cccccCCCCEEEE
Confidence 9999999998764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.6e-14 Score=151.78 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=105.6
Q ss_pred EEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCc
Q 000080 2226 SSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGR 2305 (2389)
Q Consensus 2226 AFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggr 2305 (2389)
+++++|++|||||.||+|||||+.++++++++. ||.+.|++|+|+|+ .|++|+.|+++++|+......
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~----------~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~ 89 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV----------GHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGEC 89 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECC----------CCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEE
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe----------CCCCCEEEEEeCCC--ccccceecccccccccccccc
Confidence 477789999999999999999999999999884 56789999999985 999999999999998754210
Q ss_pred ---------------------------------------------------------------------------cCccc
Q 000080 2306 ---------------------------------------------------------------------------SNVRP 2310 (2389)
Q Consensus 2306 ---------------------------------------------------------------------------s~~k~ 2310 (2389)
.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 169 (342)
T d2ovrb2 90 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 169 (342)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE
T ss_pred eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccccee
Confidence 00112
Q ss_pred ceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2311 l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
+..+.+|...+. .+.+ +|..||++ +.|++|++||+ ..+++++.+.+|...+.++++++ ++.++
T Consensus 170 ~~~~~~~~~~~~--~~~~-~~~~l~s~---~~dg~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~~--~~l~s 232 (342)
T d2ovrb2 170 LHTLQGHTNRVY--SLQF-DGIHVVSG---SLDTSIRVWDV--ETGNCIHTLTGHQSLTSGMELKD--NILVS 232 (342)
T ss_dssp EEEECCCSSCEE--EEEE-CSSEEEEE---ETTSCEEEEET--TTCCEEEEECCCCSCEEEEEEET--TEEEE
T ss_pred eEEEcCcccccc--cccC-CCCEEEEE---eCCCeEEEeec--ccceeeeEecccccceeEEecCC--CEEEE
Confidence 233445555444 4445 67899987 48999999998 56788999999999999999876 44444
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.45 E-value=3.6e-14 Score=165.95 Aligned_cols=128 Identities=10% Similarity=-0.005 Sum_probs=99.8
Q ss_pred EcCCCC--eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCC
Q 000080 2227 SHPLRP--FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGG 2304 (2389)
Q Consensus 2227 FsPdG~--~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tgg 2304 (2389)
+.+|.+ +++++++|++|++||..+++.+.++. . | ..|.+|+|||||++|++++.|++|++||+.++.
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~---~-------g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~ 94 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID---T-------G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKE 94 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEE---C-------C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEe---C-------C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence 445544 67899999999999999999999984 2 2 459999999999999999999999999999873
Q ss_pred ccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEE
Q 000080 2305 RSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYD 2370 (2389)
Q Consensus 2305 rs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~ 2370 (2389)
......+....+|.+.+.+++|+| ||++|++++ ..|++|++||. .++.+++.+.+|...+.
T Consensus 95 ~~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~--~~~~~v~i~d~--~~~~~~~~~~~~~~~~~ 155 (426)
T d1hzua2 95 PTKVAEIKIGIEARSVESSKFKGY-EDRYTIAGA--YWPPQFAIMDG--ETLEPKQIVSTRGMTVD 155 (426)
T ss_dssp CEEEEEEECCSEEEEEEECCSTTC-TTTEEEEEE--EESSEEEEEET--TTCCEEEEEECCEECSS
T ss_pred eeEEEEEeCCCCCcceEEeeeecC-CCCEEEEee--cCCCeEEEEcC--CccceeEEeeccCCCcc
Confidence 111112233456777788889999 999987664 58999999997 56677777777665443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=8.4e-13 Score=142.61 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=111.2
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCC
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGG 2304 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tgg 2304 (2389)
.++.++++++++|+.|+.|++||+.+++.+.++. ++...+.++.|+|+++.+++++.|++|++||++++
T Consensus 165 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~- 233 (355)
T d1nexb2 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS----------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG- 233 (355)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC----------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC-
T ss_pred cccccccceeeeecccceeeeeecccccceeeee----------ccccccccccccccceeeecccccceEEeeecccc-
Confidence 3577889999999999999999999999887763 34577999999999999999999999999999986
Q ss_pred ccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEee-cccchhh
Q 000080 2305 RSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLP-LKLLNFA 2381 (2389)
Q Consensus 2305 rs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~-~~~~~~~ 2381 (2389)
..+..+.+|...|.+++|++ ++||++ +.|++|++||+. +..+.+.+|...+.+++. +++++++
T Consensus 234 ----~~~~~~~~h~~~v~~~~~~~---~~l~~~---~~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (355)
T d1nexb2 234 ----ELMYTLQGHTALVGLLRLSD---KFLVSA---AADGSIRGWDAN----DYSRKFSYHHTNLSAITTFYVSDNIL 297 (355)
T ss_dssp ----CEEEEECCCSSCCCEEEECS---SEEEEE---CTTSEEEEEETT----TCCEEEEEECTTCCCCCEEEECSSEE
T ss_pred ----cccccccccccccccccccc---ceeeee---eccccccccccc----ccceecccccCCceEEEEEcCCCCEE
Confidence 46788899999999999986 789986 589999999972 345778889988887654 4455444
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=2.5e-12 Score=137.26 Aligned_cols=120 Identities=12% Similarity=-0.014 Sum_probs=81.1
Q ss_pred ccCCCCCCCcceeecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcE
Q 000080 33 IPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQL 112 (2389)
Q Consensus 33 ip~ap~~~~~ai~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeI 112 (2389)
|.-||.-...+++|+|| | +++|-|+.+..|..| +-....... .+++. .+|.+ +|.+|+|+|+ ++.+
T Consensus 6 ~~~~h~d~I~~l~fsp~--~-~~L~s~s~Dg~v~iw--d~~~~~~~~---~~~~~-~~h~~--~V~~v~f~~~---~~~~ 71 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPS--K-SLLLITSWDGSLTVY--KFDIQAKNV---DLLQS-LRYKH--PLLCCNFIDN---TDLQ 71 (342)
T ss_dssp CSSCCSSCEEEEEEEGG--G-TEEEEEETTSEEEEE--EEETTTTEE---EEEEE-EECSS--CEEEEEEEES---SSEE
T ss_pred cCCCCCCCEEEEEEeCC--C-CEEEEEECCCeEEEE--EccCCCcce---EEEEe-cCCCC--CEEEEEEeCC---CCCE
Confidence 56899999999999998 7 599999999999888 422221111 11122 24554 8999999996 5555
Q ss_pred EE--ecCCeEEEEeeCCCCCCCCccceeeEEecccceEEEEeecCCCCeEEEEecc--eEEeec
Q 000080 113 AA--ASENCIFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGME--TVLWKK 172 (2389)
Q Consensus 113 aA--SyDntIRVw~~d~~~~kgd~~W~~~~tL~hssTV~sIAWSpdG~rLaSggdD--V~IW~~ 172 (2389)
++ +.|++|++|.... .. ........+........+.+++..+++++.+ +.+|+.
T Consensus 72 l~sg~~d~~v~~w~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~ 129 (342)
T d1yfqa_ 72 IYVGTVQGEILKVDLIG----SP--SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp EEEEETTSCEEEECSSS----SS--SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred EEEcccccceeeeeccc----cc--ccccccccccccccccccccccccccccccccccceeec
Confidence 53 4689999998762 11 1111111234455667778888999998887 889984
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.40 E-value=4.1e-14 Score=168.22 Aligned_cols=137 Identities=10% Similarity=-0.059 Sum_probs=104.2
Q ss_pred cCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccC
Q 000080 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2389)
Q Consensus 2228 sPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~ 2307 (2389)
+++.-++++.++|++|+|||..+++++.++.. | ..|..|+|||||+++++++.||+|++||+++++...
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~---------g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~ 97 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT---------G--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT 97 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC---------S--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeC---------C--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE
Confidence 33333569999999999999999999999851 2 359999999999999999999999999999874211
Q ss_pred cccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec-----------CcEEEEeecc
Q 000080 2308 VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-----------GLYDLFLPLK 2376 (2389)
Q Consensus 2308 ~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~-----------~~V~svA~~~ 2376 (2389)
...+....+|.+.+.+++|+| ||++|+.++ +.|++|+|||+ .+++.++.+.+|. .....++.++
T Consensus 98 ~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~--~~~~~v~i~d~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~ 172 (432)
T d1qksa2 98 VAEIKIGSEARSIETSKMEGW-EDKYAIAGA--YWPPQYVIMDG--ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 172 (432)
T ss_dssp EEEEECCSEEEEEEECCSTTC-TTTEEEEEE--EETTEEEEEET--TTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred EEEEecCCCCCCeEEecccCC-CCCEEEEEc--CCCCeEEEEeC--ccccceeeeccCCccccceeccCCCceeEEEECC
Confidence 122333456777777788888 999875443 58999999998 5777777776654 4445677777
Q ss_pred cchh
Q 000080 2377 LLNF 2380 (2389)
Q Consensus 2377 ~~~~ 2380 (2389)
+|..
T Consensus 173 dg~~ 176 (432)
T d1qksa2 173 YRPE 176 (432)
T ss_dssp SSSE
T ss_pred CCCE
Confidence 7754
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.40 E-value=8.7e-13 Score=156.67 Aligned_cols=150 Identities=6% Similarity=-0.100 Sum_probs=112.2
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEee
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQ 2299 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLWD 2299 (2389)
.+..++|+|||++++++|.|++|++||+.+++.....+.-.+ .+|.+.|.+++|||||++| |+++.|++|+|||
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~-----~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d 137 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-----SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD 137 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-----SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC-----CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEe
Confidence 468999999999999999999999999988874333221011 2456778889999999975 7899999999999
Q ss_pred CCCCCccCcccceeee-----------ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE-eecC
Q 000080 2300 LEVGGRSNVRPMESCL-----------CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEG 2367 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~-----------gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~-GH~~ 2367 (2389)
.+++. ++.... .+......|+++| ||..++.+. +++++|.+||. .+.+...... .+..
T Consensus 138 ~~t~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~--~~~~~i~~~d~--~~~~~~~~~~i~~g~ 207 (432)
T d1qksa2 138 GETLE-----PKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNV--KETGKILLVDY--TDLNNLKTTEISAER 207 (432)
T ss_dssp TTTCC-----EEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEE--TTTTEEEEEET--TCSSEEEEEEEECCS
T ss_pred Ccccc-----ceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEE--ccCCeEEEEEc--cCCCcceEEEEcccC
Confidence 99863 333332 3556677899999 788766553 57899999997 3444443333 3556
Q ss_pred cEEEEeecccchhhhccc
Q 000080 2368 LYDLFLPLKLLNFALSKC 2385 (2389)
Q Consensus 2368 ~V~svA~~~~~~~~~s~~ 2385 (2389)
....++++|+|++++.-+
T Consensus 208 ~~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 208 FLHDGGLDGSHRYFITAA 225 (432)
T ss_dssp SEEEEEECTTSCEEEEEE
T ss_pred ccccceECCCCCEEEEec
Confidence 788999999999876544
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.2e-11 Score=129.83 Aligned_cols=172 Identities=15% Similarity=0.092 Sum_probs=125.4
Q ss_pred cccceeecccccccccccccc--CCCCcC--ceeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCC---
Q 000080 2192 AGIGASALGWETQDDFEDYVD--PPATVE--NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN--- 2264 (2389)
Q Consensus 2192 ~~~~Asg~~~d~~~~~~~~~d--~~atv~--ni~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~--- 2264 (2389)
+.++|+| +.|.+.++|+... ..+++. .-+|.+|+| ++++|+|||.|++|++|++.++.............
T Consensus 25 ~~~l~sg-s~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~ 101 (293)
T d1p22a2 25 DQKIVSG-LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101 (293)
T ss_dssp SSEEEEE-ESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred CCEEEEE-eCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccc
Confidence 4578888 8899999998742 222222 235677766 67899999999999999998876554332100000
Q ss_pred ------------------------------CCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceee
Q 000080 2265 ------------------------------VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC 2314 (2389)
Q Consensus 2265 ------------------------------~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl 2314 (2389)
.....|...|..+.+.+ ..+++++.|++|++||++++ +++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~-----~~~~~~ 174 (293)
T d1p22a2 102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTC-----EFVRTL 174 (293)
T ss_dssp ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTC-----CEEEEE
T ss_pred cccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCC-----cEEEEE
Confidence 00245667777777655 46889999999999999986 467788
Q ss_pred eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2315 ~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
.+|...+..+.+++ ..|+++ +.|++|+|||+ .+.+.+..+.+|...+.++++ ++++.++
T Consensus 175 ~~~~~~v~~~~~~~---~~l~~~---~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~s 233 (293)
T d1p22a2 175 NGHKRGIACLQYRD---RLVVSG---SSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DNKRIVS 233 (293)
T ss_dssp ECCSSCEEEEEEET---TEEEEE---ETTSCEEEEET--TTCCEEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred cccccccccccCCC---CeEEEe---cCCCEEEEEec--ccceeeeeecccceeeeeccc--cceEEEE
Confidence 89999998888775 678886 48999999998 467778999999999887655 3445444
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.25 E-value=8.9e-12 Score=145.54 Aligned_cols=174 Identities=7% Similarity=-0.102 Sum_probs=116.1
Q ss_pred cceeecccccccccccccc--CCCCcCc-eeEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCC
Q 000080 2194 IGASALGWETQDDFEDYVD--PPATVEN-ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA 2270 (2389)
Q Consensus 2194 ~~Asg~~~d~~~~~~~~~d--~~atv~n-i~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH 2270 (2389)
+.++. ..+...++|+... .+++++. -.+++|+|||||++|++++.|++|++||+.+++...+++. +.. .+|
T Consensus 34 ~~V~~-~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i-~~~----~~~ 107 (426)
T d1hzua2 34 FSVTL-RDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-KIG----IEA 107 (426)
T ss_dssp EEEEE-TTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-ECC----SEE
T ss_pred EEEEE-cCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE-eCC----CCC
Confidence 33444 5566666666531 1122211 2468999999999999999999999999999986554432 111 256
Q ss_pred CCCEEEEEECCCCCEE-EEEeCCCcEEEeeCCCCCccCcccceeeeecCC-----------CeeEEEEecCCCCEEEEee
Q 000080 2271 LASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS-----------HAMDVSYITSSGSVIAAAG 2338 (2389)
Q Consensus 2271 ~~~V~sVaFSPDG~~L-ASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~-----------~V~sVAFSP~DGslLASAG 2338 (2389)
.+.+.+++|||||+++ +++..|+++++||.+++ .+.....+|.. ....+++++ ++..++.+.
T Consensus 108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~ 181 (426)
T d1hzua2 108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNV 181 (426)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-----CEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEE
T ss_pred cceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-----ceeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEec
Confidence 7889999999999987 45568999999999986 24444444443 344455555 555555432
Q ss_pred cCCCCCeEEEeeCCCCCCCc-eEEEEeecCcEEEEeecccchhhhc
Q 000080 2339 HSSNGINVVVWDTLAPPTSS-RASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2339 ~sS~D~TVrLWD~l~~tg~~-v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
...+.|.+++.. .... .....+|...+..++++|+|++.+.
T Consensus 182 --~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 223 (426)
T d1hzua2 182 --KETGKVLLVNYK--DIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223 (426)
T ss_dssp --TTTTEEEEEECS--SSSSCEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred --CCCCeEEEEEec--cccceeeEEeccCCccEeeeECCCCcEEEe
Confidence 344555555542 2222 3456678899999999999987654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=1.8e-11 Score=132.61 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=104.6
Q ss_pred CeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEeeCCCCCccCccc
Q 000080 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRP 2310 (2389)
Q Consensus 2232 ~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLWDl~tggrs~~k~ 2310 (2389)
.++++++.|++|++||+.+++.+.++.. + .+...+.+++|||||+++ ++++.|++|.+||++++ +.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~-~-------~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-----~~ 68 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITI-A-------DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-----ET 68 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-T-------TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-----CE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEEC-C-------CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-----cE
Confidence 4799999999999999999999988742 2 233567899999999987 67788999999999997 34
Q ss_pred ceeeeecC-----CCeeEEEEecCCCCEEEEeecC---------CCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2311 MESCLCFS-----SHAMDVSYITSSGSVIAAAGHS---------SNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2311 l~tl~gHs-----~~V~sVAFSP~DGslLASAG~s---------S~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
+.+...+. ..+..++|+| ||+.+++++.. ..+..+.+||. .+++.+..+. +...+..+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~-~~~~~~~~~~s~ 144 (337)
T d1pbyb_ 69 LGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDA--ETLSRRKAFE-APRQITMLAWAR 144 (337)
T ss_dssp EEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEET--TTTEEEEEEE-CCSSCCCEEECT
T ss_pred EEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccc--cCCeEEEecc-ccCCceEEEEcC
Confidence 45554443 3345799999 99999876421 14678999997 4566677777 456788999999
Q ss_pred cchhhhc
Q 000080 2377 LLNFALS 2383 (2389)
Q Consensus 2377 ~~~~~~s 2383 (2389)
+|+++.+
T Consensus 145 dg~~l~~ 151 (337)
T d1pbyb_ 145 DGSKLYG 151 (337)
T ss_dssp TSSCEEE
T ss_pred CCCEEEE
Confidence 9998765
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.5e-11 Score=134.14 Aligned_cols=139 Identities=8% Similarity=0.009 Sum_probs=99.6
Q ss_pred eEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEeeCCCCCccCcccc
Q 000080 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRPM 2311 (2389)
Q Consensus 2233 ~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLWDl~tggrs~~k~l 2311 (2389)
.++++++|++|++||+.+...+..++.+ .|.+.|+.|+|||||++| ++++.|++|++|++...+. ....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~--------~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~--~~~~ 75 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV--------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--ALTF 75 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE--------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC--CEEE
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEE--------cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC--cEEE
Confidence 4688999999999999755433322211 134679999999999988 5555699999999987531 1122
Q ss_pred eeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2312 ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2312 ~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.....+...+..++|+| ||++|++++ ..+++|++|+..............|...+.+++++++|++++.-
T Consensus 76 ~~~~~~~~~p~~l~~sp-Dg~~l~v~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~ 145 (333)
T d1ri6a_ 76 AAESALPGSLTHISTDH-QGQFVFVGS--YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP 145 (333)
T ss_dssp EEEEECSSCCSEEEECT-TSSEEEEEE--TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEE
T ss_pred eeecccCCCceEEEEcC-CCCEEeecc--cCCCceeeeccccccceecccccCCCccceEEEeeecceeeecc
Confidence 22333555677899999 999999875 47889999997322222244556688889999999999986653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.18 E-value=1.5e-10 Score=124.11 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=102.1
Q ss_pred EEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEeeCCCCCccCcccce
Q 000080 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRPME 2312 (2389)
Q Consensus 2234 LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLWDl~tggrs~~k~l~ 2312 (2389)
+++++.|++|++||+.+++.++++.. | ..++.|+|||||++| ++++.|++|++||++++ +.+.
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~---------g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~-----~~~~ 68 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPV---------G--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-----NVIA 68 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC---------S--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-----EEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEEC---------C--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-----ceee
Confidence 56788999999999999999888741 1 447899999999977 57788999999999986 4566
Q ss_pred eeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhc
Q 000080 2313 SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2313 tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s 2383 (2389)
++..|. .+..++|++ +|..++.++ ..|+.+++||. .+++.+..+. +.....+++++++|++++.
T Consensus 69 ~~~~~~-~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~ 132 (301)
T d1l0qa2 69 TVPAGS-SPQGVAVSP-DGKQVYVTN--MASSTLSVIDT--TSNTVAGTVK-TGKSPLGLALSPDGKKLYV 132 (301)
T ss_dssp EEECSS-SEEEEEECT-TSSEEEEEE--TTTTEEEEEET--TTTEEEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred eeeccc-ccccccccc-ccccccccc--cccceeeeccc--ccceeeeecc-ccccceEEEeecCCCeeee
Confidence 666665 468899999 888776654 68899999997 4556667776 5567789999999998753
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.15 E-value=6.1e-10 Score=119.25 Aligned_cols=140 Identities=8% Similarity=0.029 Sum_probs=110.3
Q ss_pred EEEEEEcCCCCeE-EEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCE-EEEEeCCCcEEEee
Q 000080 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDGTVCTWQ 2299 (2389)
Q Consensus 2222 VrsVAFsPdG~~L-ASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~-LASgS~DgTVkLWD 2299 (2389)
.+.|+|+|||++| ++++.|++|++||+.+++.+.++. .| ..+..++|++||+. ++++..|+.+++||
T Consensus 34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AG--------SSPQGVAVSPDGKQVYVTNMASSTLSVID 102 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CS--------SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---cc--------ccccccccccccccccccccccceeeecc
Confidence 4889999999976 678899999999999999998874 22 45799999999975 55667888999999
Q ss_pred CCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccch
Q 000080 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLN 2379 (2389)
Q Consensus 2300 l~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~ 2379 (2389)
..++ +....+. +......++|+| ||+.++.++ +.|+++.+||. .+...+..+. +......++.+++++
T Consensus 103 ~~~~-----~~~~~~~-~~~~~~~~~~~~-dg~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~ 170 (301)
T d1l0qa2 103 TTSN-----TVAGTVK-TGKSPLGLALSP-DGKKLYVTN--NGDKTVSVINT--VTKAVINTVS-VGRSPKGIAVTPDGT 170 (301)
T ss_dssp TTTT-----EEEEEEE-CSSSEEEEEECT-TSSEEEEEE--TTTTEEEEEET--TTTEEEEEEE-CCSSEEEEEECTTSS
T ss_pred cccc-----eeeeecc-ccccceEEEeec-CCCeeeeee--ccccceeeeec--cccceeeecc-cCCCceEEEeecccc
Confidence 9876 3444444 445678899999 888887654 68999999997 4555566666 445688999999998
Q ss_pred hhhcc
Q 000080 2380 FALSK 2384 (2389)
Q Consensus 2380 ~~~s~ 2384 (2389)
+++.-
T Consensus 171 ~~~~~ 175 (301)
T d1l0qa2 171 KVYVA 175 (301)
T ss_dssp EEEEE
T ss_pred ceeee
Confidence 77654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.15 E-value=3.9e-11 Score=130.48 Aligned_cols=139 Identities=7% Similarity=-0.001 Sum_probs=100.0
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEeeCCCC
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVG 2303 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLWDl~tg 2303 (2389)
+||++++++|++++.|++|.+||+.+++.+.+++. + |...+.+|+|+|||+++ ++++.|++|++||+.++
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-~--------~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~ 72 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-P--------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 72 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-S--------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc-C--------CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence 47999999999999999999999999999998852 1 23457899999999976 67778999999999986
Q ss_pred CccCcccceeeee------cCCCeeEEEEecCCCCEEEEeecC---------CCCCeEEEeeCCCCCCCceEEEEee--c
Q 000080 2304 GRSNVRPMESCLC------FSSHAMDVSYITSSGSVIAAAGHS---------SNGINVVVWDTLAPPTSSRASITCH--E 2366 (2389)
Q Consensus 2304 grs~~k~l~tl~g------Hs~~V~sVAFSP~DGslLASAG~s---------S~D~TVrLWD~l~~tg~~v~sL~GH--~ 2366 (2389)
. .+.+... +...+..++|+| ||++++.++.. ..+..+++||. .+++....+..| .
T Consensus 73 ~-----~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~ 144 (346)
T d1jmxb_ 73 K-----NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFST--ADGLEAKPVRTFPMP 144 (346)
T ss_dssp E-----EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEG--GGGGGBCCSEEEECC
T ss_pred e-----eeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEec--ccceeeeEEEeeecc
Confidence 2 3333221 223456799999 99988876311 25788999997 344444444333 2
Q ss_pred CcEEEEeecccchh
Q 000080 2367 GLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2367 ~~V~svA~~~~~~~ 2380 (2389)
..+..++.++++..
T Consensus 145 ~~~~~~~~~~~~~~ 158 (346)
T d1jmxb_ 145 RQVYLMRAADDGSL 158 (346)
T ss_dssp SSCCCEEECTTSCE
T ss_pred CceEEEEecCCCEE
Confidence 44555565666543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.1e-09 Score=119.39 Aligned_cols=148 Identities=9% Similarity=0.060 Sum_probs=102.7
Q ss_pred eEEEEEEcCCCCeE-EEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCcEEEe
Q 000080 2221 STRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTW 2298 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~L-ASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgTVkLW 2298 (2389)
.++.|+|||||++| ++++.|++|++|++..+....++.. +. .+...+..++|||||++|++++. +++|++|
T Consensus 38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~---~~----~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~ 110 (333)
T d1ri6a_ 38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA---ES----ALPGSLTHISTDHQGQFVFVGSYNAGNVSVT 110 (333)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE---EE----ECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee---ec----ccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence 34788999999988 5566799999999987754433321 10 12245678999999999999884 7899999
Q ss_pred eCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE-----eecCcEEEEe
Q 000080 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-----CHEGLYDLFL 2373 (2389)
Q Consensus 2299 Dl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~-----GH~~~V~svA 2373 (2389)
+..... .........|...+.+++|+| ||+.+++++ ..+..|++|+.. .......... .+....+.++
T Consensus 111 ~~~~~~---~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~g~~p~~i~ 183 (333)
T d1ri6a_ 111 RLEDGL---PVGVVDVVEGLDGCHSANISP-DNRTLWVPA--LKQDRICLFTVS-DDGHLVAQDPAEVTTVEGAGPRHMV 183 (333)
T ss_dssp EEETTE---EEEEEEEECCCTTBCCCEECT-TSSEEEEEE--GGGTEEEEEEEC-TTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred cccccc---ceecccccCCCccceEEEeee-cceeeeccc--cccceeeEEEec-cCCcceeeeceeeeeecCCCccEEE
Confidence 987642 233444556777888999999 999888875 467889999973 1222211111 1224456888
Q ss_pred ecccchhhh
Q 000080 2374 PLKLLNFAL 2382 (2389)
Q Consensus 2374 ~~~~~~~~~ 2382 (2389)
+++++.+..
T Consensus 184 ~~~~~~~~~ 192 (333)
T d1ri6a_ 184 FHPNEQYAY 192 (333)
T ss_dssp ECTTSSEEE
T ss_pred EeccceeEE
Confidence 888887654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.86 E-value=3.1e-09 Score=124.64 Aligned_cols=139 Identities=9% Similarity=-0.025 Sum_probs=106.4
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC---------CCcE
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---------DGTV 2295 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~---------DgTV 2295 (2389)
+.|.+|++++.. +|++|++||+.+|+....+. .+. ..+|...|.+++|||||++||.++. ++.+
T Consensus 22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~---~~~--~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLE---NST--FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CEECSSSEEEEE--SSSCEEEEETTTCCEEEEEC---TTT--TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEc---hhh--hhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence 479999998875 68899999999999876553 222 2356678999999999999999864 5778
Q ss_pred EEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEee----------
Q 000080 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH---------- 2365 (2389)
Q Consensus 2296 kLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH---------- 2365 (2389)
.|||++++ .+..+..|...+..++||| ||+.||.. .|+++.+|+. ..++.++....+
T Consensus 95 ~l~d~~~~------~~~~l~~~~~~~~~~~~SP-DG~~ia~~----~~~~l~~~~~--~~g~~~~~t~~~~~~~~~~g~~ 161 (470)
T d2bgra1 95 DIYDLNKR------QLITEERIPNNTQWVTWSP-VGHKLAYV----WNNDIYVKIE--PNLPSYRITWTGKEDIIYNGIT 161 (470)
T ss_dssp EEEETTTT------EECCSSCCCTTEEEEEECS-STTCEEEE----ETTEEEEESS--TTSCCEECCSCCBTTTEEESBC
T ss_pred EEEECCCC------cccccccCCcccccccccc-CcceeeEe----ecccceEEEC--CCCceeeeeeccCCCccccccc
Confidence 89999986 2455678899999999999 99999985 6789999997 345544433222
Q ss_pred --------cCcEEEEeecccchhhhc
Q 000080 2366 --------EGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2366 --------~~~V~svA~~~~~~~~~s 2383 (2389)
.+....+..||+|++++.
T Consensus 162 d~~~~~~~~~~~~~~~wSPDGk~ia~ 187 (470)
T d2bgra1 162 DWVYEEEVFSAYSALWWSPNGTFLAY 187 (470)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEE
T ss_pred ceeeeeeecCCccccEECCCCCccce
Confidence 123345778999987754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.85 E-value=9e-09 Score=111.19 Aligned_cols=140 Identities=10% Similarity=0.002 Sum_probs=104.3
Q ss_pred EEEEEcCCCCeEEEEe------------CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe
Q 000080 2223 RAFSSHPLRPFFLVGS------------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS------------~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS 2290 (2389)
..++|+|||+++++++ .+..+.+||..+++.+.++.. ...++.++|+|||+++++++
T Consensus 85 ~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTTSSCEEEES
T ss_pred eeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-----------cCCceEEEEcCCCCEEEEEc
Confidence 5679999999998877 467899999999998887741 24578899999999999987
Q ss_pred CCCcEEEeeCCCCCcc-------------------------------------------------------------Ccc
Q 000080 2291 LDGTVCTWQLEVGGRS-------------------------------------------------------------NVR 2309 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs-------------------------------------------------------------~~k 2309 (2389)
.| +.+||+.++... ...
T Consensus 154 ~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (337)
T d1pbyb_ 154 RD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp SS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred CC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE
Confidence 65 677887654100 000
Q ss_pred cceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhhcc
Q 000080 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFALSK 2384 (2389)
Q Consensus 2310 ~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~ 2384 (2389)
.......|...+...+++| ++.+++.+ |++|++||+ .+++.+..+. |.+.+.+++++|+|++...-
T Consensus 232 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~i~v~d~--~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~ 297 (337)
T d1pbyb_ 232 AMREVRIMDVFYFSTAVNP-AKTRAFGA-----YNVLESFDL--EKNASIKRVP-LPHSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEEEEEECSSCEEEEEECT-TSSEEEEE-----ESEEEEEET--TTTEEEEEEE-CSSCCCEEEECTTSCEEEEE
T ss_pred EEEEecCCCcceEEEEecc-cceEEEEc-----cccEEEEEC--CCCcEEEEEc-CCCCEEEEEECCCCCEEEEE
Confidence 0112344666677788888 78888753 589999998 5677777775 77889999999999986543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.76 E-value=2.3e-08 Score=111.55 Aligned_cols=136 Identities=10% Similarity=-0.077 Sum_probs=95.9
Q ss_pred EEEEEEcCCCCeEEEE-----eCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe------
Q 000080 2222 TRAFSSHPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA------ 2290 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASG-----S~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS------ 2290 (2389)
+.+++++|||+.++.. +.++.|.+||..+|+.+.++. ++ ....++|||||++|++++
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~---~~---------~~~~~a~SpDG~~l~va~~~~~~~ 90 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN---GG---------FLPNPVAAHSGSEFALASTSFSRI 90 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe---CC---------CCccEEEcCCCCEEEEEeecCCcc
Confidence 3666999999987653 345679999999999988763 22 123699999999999975
Q ss_pred ----CCCcEEEeeCCCCCccCcccceeeeecCCCe-------eEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCce
Q 000080 2291 ----LDGTVCTWQLEVGGRSNVRPMESCLCFSSHA-------MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR 2359 (2389)
Q Consensus 2291 ----~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V-------~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v 2359 (2389)
.|++|++||+.++ ++......+.... ..++|+| ||+.++.... ..++.+.+||.. +
T Consensus 91 ~~~~~~~~v~v~D~~t~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~-~~~~~~~~~~~~--~---- 157 (373)
T d2madh_ 91 AKGKRTDYVEVFDPVTF-----LPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQF-AAGPAVGLVVQG--G---- 157 (373)
T ss_pred cccccceEEEEEECCCC-----cEEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEE-cCCCceEEeecc--C----
Confidence 4688999999986 2444444443322 4578999 7787665432 357789999962 2
Q ss_pred EEEEeecCcEEEEeecccchhhh
Q 000080 2360 ASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2360 ~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
.....|.....+++++++|++++
T Consensus 158 ~~~~~~~~~~~~~~~s~~g~~~~ 180 (373)
T d2madh_ 158 SSDDQLLSSPTCYHIHPGAPSTF 180 (373)
T ss_pred CeEEEEeccceeEEEecCCCcEE
Confidence 22344555667888888887653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.68 E-value=3.7e-08 Score=108.55 Aligned_cols=135 Identities=12% Similarity=0.018 Sum_probs=95.3
Q ss_pred EEcCCCCeEEEE-----eCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe----------
Q 000080 2226 SSHPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA---------- 2290 (2389)
Q Consensus 2226 AFsPdG~~LASG-----S~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS---------- 2290 (2389)
+.+|||+.++.. +.+.+|.+||..+|+.+.++. . +.+..++|||||++|+.++
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~---~---------g~~~~~a~SpDg~~l~v~~~~~~~~~~g~ 75 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID---G---------GFLPNPVVADDGSFIAHASTVFSRIARGE 75 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE---E---------CSSCEEEECTTSSCEEEEEEEEEETTEEE
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE---C---------CCCCceEEcCCCCEEEEEeCCCccccccC
Confidence 568999987654 456789999999999988874 2 2234799999999998754
Q ss_pred CCCcEEEeeCCCCCccCcccceeeeecC-------CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE
Q 000080 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFS-------SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2389)
Q Consensus 2291 ~DgTVkLWDl~tggrs~~k~l~tl~gHs-------~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~ 2363 (2389)
.|++|++||++++. +......+. .....++|+| ||+.++.+.. +.+..+.+||. .+++.+..+.
T Consensus 76 ~d~~v~v~D~~t~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~-~~~~~~~~~~~--~~~~~~~~~~ 146 (355)
T d2bbkh_ 76 RTDYVEVFDPVTLL-----PTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQF-SPAPAVGVVDL--EGKAFKRMLD 146 (355)
T ss_dssp EEEEEEEECTTTCC-----EEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEEC-SSSCEEEEEET--TTTEEEEEEE
T ss_pred CCCEEEEEECCCCC-----EEEEEecCCcceeecCCCCceEEEec-CCCeeEEecC-CCCceeeeeec--CCCcEeeEEe
Confidence 58999999999873 333333222 2335689999 8898877642 46789999998 4566666665
Q ss_pred eecC-------cEEEEeecccchhh
Q 000080 2364 CHEG-------LYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2364 GH~~-------~V~svA~~~~~~~~ 2381 (2389)
.+.. ....++++++|...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~dg~~~ 171 (355)
T d2bbkh_ 147 VPDCYHIFPTAPDTFFMHCRDGSLA 171 (355)
T ss_dssp CCSEEEEEEEETTEEEEEETTSCEE
T ss_pred cCCcceEeecCCcceEEEcCCCCEE
Confidence 4432 23356677776643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.54 E-value=7.3e-07 Score=99.27 Aligned_cols=143 Identities=12% Similarity=0.025 Sum_probs=97.6
Q ss_pred EEEEEcCCCCe-EEEEeCCCcEEEeecCCCceeeEeccc---CCCC----------------CC----------------
Q 000080 2223 RAFSSHPLRPF-FLVGSSNTHIYLWEFGKDKATATYGVL---PAAN----------------VP---------------- 2266 (2389)
Q Consensus 2223 rsVAFsPdG~~-LASGS~DgTIRLWDl~tGk~l~Tl~vl---~gh~----------------~p---------------- 2266 (2389)
..++|+|+|+. +++++.|+++.+||..+++...+.... .++. .+
T Consensus 168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 247 (373)
T d2madh_ 168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT 247 (373)
T ss_pred eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEE
Confidence 67799999985 578999999999998877765443110 0000 00
Q ss_pred ----CCCCC----------CCEEEEEECCCCCEEE----------EEeCCCcEEEeeCCCCCccCcccceeeeecCCCee
Q 000080 2267 ----PPYAL----------ASISALQFDHYGHRFA----------SAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM 2322 (2389)
Q Consensus 2267 ----~~GH~----------~~V~sVaFSPDG~~LA----------SgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~ 2322 (2389)
..++. .....++++|||..++ +...+++|.+||+.++. .+.++ .+...+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~-----~~~~~-~~~~~~~ 321 (373)
T d2madh_ 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-----TSSQI-SLGHDVD 321 (373)
T ss_pred EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc-----EEEEe-cCCCCee
Confidence 00000 1123356666665543 45567789999998862 34443 4667899
Q ss_pred EEEEecCCCCE--EEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeeccc
Q 000080 2323 DVSYITSSGSV--IAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKL 2377 (2389)
Q Consensus 2323 sVAFSP~DGsl--LASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~ 2377 (2389)
+++|+| ||+. ++++ +.|++|+|||+ .+++.++++.+|-..-+.|+....
T Consensus 322 ~~a~sp-DG~~~l~vt~---~~d~~v~v~D~--~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 322 AISVAQ-DGGPDLYALS---AGTEVLHIYDA--GAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEECC-CCCEEEEEEe---CCCCeEEEEEC--CCCCEEEEECCCCCCCcEEEEecC
Confidence 999999 8984 4554 58999999998 688999999988877888877653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.53 E-value=1.1e-07 Score=102.90 Aligned_cols=123 Identities=7% Similarity=-0.048 Sum_probs=89.7
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCCC
Q 000080 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVG 2303 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tg 2303 (2389)
...+.+....+++++.+..+.+||..++....... .+|...+.++.++|++..+++++. ++|++||+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~ 282 (346)
T d1jmxb_ 213 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQR 282 (346)
T ss_dssp EEEC-------CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTT
T ss_pred eeeeccCceeEeeccCCceEEEEECCCCceEEEEe---------ecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCC
Confidence 34455667778888899999999999888654432 124577999999999999988775 57999999986
Q ss_pred CccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecCc
Q 000080 2304 GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGL 2368 (2389)
Q Consensus 2304 grs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~ 2368 (2389)
+.+... .+...+.+++|+| ||++|+++| .|++|++||+ .+.+.++++.-+.+.
T Consensus 283 -----~~~~~~-~~~~~~~~va~s~-DG~~l~v~~---~d~~v~v~D~--~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 283 -----KLIKAA-NLDHTYYCVAFDK-KGDKLYLGG---TFNDLAVFNP--DTLEKVKNIKLPGGD 335 (346)
T ss_dssp -----EEEEEE-ECSSCCCEEEECS-SSSCEEEES---BSSEEEEEET--TTTEEEEEEECSSSC
T ss_pred -----cEEEEE-cCCCCEEEEEEcC-CCCEEEEEe---CCCcEEEEEC--ccCCEEEEEECCCCC
Confidence 234433 3456789999999 999999974 7899999998 577888888744433
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.50 E-value=1.1e-07 Score=104.71 Aligned_cols=142 Identities=6% Similarity=-0.003 Sum_probs=96.8
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCC---CCCCCCCCEEEEEECCCCCEEEEEeCC-------
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV---PPPYALASISALQFDHYGHRFASAALD------- 2292 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~---p~~GH~~~V~sVaFSPDG~~LASgS~D------- 2292 (2389)
...++.+++..++.++.|+++++|++..++... +....++.. ....+......++++|||+.+..++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 276 (355)
T d2bbkh_ 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF-LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276 (355)
T ss_dssp SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE-CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred eeccccCCCCeEEEecCCCeEEEEecCCCcEEE-EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeec
Confidence 445788999999999999999999998776421 110011110 000001223568999999988877654
Q ss_pred ---CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCC--EEEEeecCCCCCeEEEeeCCCCCCCceEEEEeecC
Q 000080 2293 ---GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS--VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2389)
Q Consensus 2293 ---gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGs--lLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~~ 2367 (2389)
++|++||+.++ +.+.++. +...+.+++|+| ||+ ++|++ +.|++|++||+ .+++.++++.+|-.
T Consensus 277 ~~~~~v~v~d~~t~-----~~~~~~~-~~~~~~~~a~sp-DG~~~l~v~~---~~d~~i~v~D~--~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 277 TASRFVVVLDAKTG-----ERLAKFE-MGHEIDSINVSQ-DEKPLLYALS---TGDKTLYIHDA--ESGEELRSVNQLGH 344 (355)
T ss_dssp SCEEEEEEEETTTC-----CEEEEEE-EEEEECEEEECC-SSSCEEEEEE---TTTTEEEEEET--TTCCEEEEECCCCS
T ss_pred CCCCeEEEEeCCCC-----cEEEEec-CCCCEEEEEEcC-CCCeEEEEEE---CCCCEEEEEEC--CCCCEEEEEeCcCC
Confidence 47999999986 2444444 335688999999 887 34553 57899999998 68888999987755
Q ss_pred cEEEEeeccc
Q 000080 2368 LYDLFLPLKL 2377 (2389)
Q Consensus 2368 ~V~svA~~~~ 2377 (2389)
.-.+|.....
T Consensus 345 ~p~~i~~~d~ 354 (355)
T d2bbkh_ 345 GPQVITTADM 354 (355)
T ss_dssp SCCEEECCCC
T ss_pred CccEEEeCCC
Confidence 5555555443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.35 E-value=3.6e-07 Score=106.88 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=79.6
Q ss_pred eEEEEEEcCCCCeEEEEeC---------CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC
Q 000080 2221 STRAFSSHPLRPFFLVGSS---------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~---------DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~ 2291 (2389)
.|.+++|||||++||.++. ++.+.|||+.+|+.. .+. +|...+..++|||||+.+|.. .
T Consensus 63 ~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~----------~~~~~~~~~~~SPDG~~ia~~-~ 130 (470)
T d2bgra1 63 SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEE----------RIPNNTQWVTWSPVGHKLAYV-W 130 (470)
T ss_dssp CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSS----------CCCTTEEEEEECSSTTCEEEE-E
T ss_pred ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-ccc----------cCCccccccccccCcceeeEe-e
Confidence 3478899999999998864 578899999888743 332 345779999999999999996 4
Q ss_pred CCcEEEeeCCCCCccCccccee-------eee---------cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMES-------CLC---------FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~t-------l~g---------Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
|+.+.+|++.++.. ..+.. ..+ +.+....+.||| ||+.||++. .++..|+.|++
T Consensus 131 ~~~l~~~~~~~g~~---~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~--~d~~~v~~~~~ 200 (470)
T d2bgra1 131 NNDIYVKIEPNLPS---YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQ--FNDTEVPLIEY 200 (470)
T ss_dssp TTEEEEESSTTSCC---EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEE--EECTTCCEEEE
T ss_pred cccceEEECCCCce---eeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeE--ecCCcCceEEE
Confidence 67899999987631 11110 011 223345688999 999999974 23444555553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.33 E-value=3e-07 Score=104.18 Aligned_cols=136 Identities=12% Similarity=-0.036 Sum_probs=92.2
Q ss_pred EEEcCCCCe---EEEEeCCCc--EEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe---------
Q 000080 2225 FSSHPLRPF---FLVGSSNTH--IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--------- 2290 (2389)
Q Consensus 2225 VAFsPdG~~---LASGS~DgT--IRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS--------- 2290 (2389)
++..|+|+. .++++.+++ |.+||..+++.+.+.. ++ . ...++|+|||++|+.++
T Consensus 25 ~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~---~~------~---~~~~a~spDg~~i~~~~~~~~~~~~g 92 (368)
T d1mdah_ 25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL---GA------F---LSLAVAGHSGSDFALASTSFARSAKG 92 (368)
T ss_dssp CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE---EC------T---TCEEEECTTSSCEEEEEEEETTTTSS
T ss_pred cccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEe---CC------C---CCcceECCCCCEEEEEcccCcccccc
Confidence 356778874 333455555 6666999999888764 22 1 23589999999999865
Q ss_pred -CCCcEEEeeCCCCCccCcccceeeeecC-------CCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE
Q 000080 2291 -LDGTVCTWQLEVGGRSNVRPMESCLCFS-------SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2389)
Q Consensus 2291 -~DgTVkLWDl~tggrs~~k~l~tl~gHs-------~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL 2362 (2389)
.|++|++||..++ +++.....|. .....++|+| ||++|+.+. ..+++|.+||+ .+++.+..+
T Consensus 93 ~~d~~v~v~D~~t~-----~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~--~~~~~v~~~d~--~~~~~~~~~ 162 (368)
T d1mdah_ 93 KRTDYVEVFDPVTF-----LPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFL--FGSSAAAGLSV--PGASDDQLT 162 (368)
T ss_dssp SEEEEEEEECTTTC-----CEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEE--CSSSCEEEEEE--TTTEEEEEE
T ss_pred ccCCeEEEEECCCC-----cEeeeecCCccceecccCCccceEECC-CCCEEEEEe--CCCCeEEEEEC--CCCcEeEEe
Confidence 4889999999986 3444443332 2234689999 999998764 36799999998 456666665
Q ss_pred Eeec-------CcEEEEeecccchhhh
Q 000080 2363 TCHE-------GLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2363 ~GH~-------~~V~svA~~~~~~~~~ 2382 (2389)
..+. +....++.+++|..++
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~Dg~~~~ 189 (368)
T d1mdah_ 163 KSASCFHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp ECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred eccCcceEccCCCceEEEEcCCCCEEE
Confidence 5433 3344577777776543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.11 E-value=1.1e-06 Score=99.54 Aligned_cols=77 Identities=8% Similarity=-0.114 Sum_probs=57.9
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe-CC
Q 000080 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LD 2292 (2389)
Q Consensus 2224 sVAFsPdG~~LASGS----------~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS-~D 2292 (2389)
.++|+|||++|+.++ .|++|++||..+++.+..+. +|.+.. .........++|||||++|+.+. .+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~--~~~g~~p~~~a~SpDGk~l~va~~~~ 145 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPR--FSVGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCS--CCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccce--ecccCCccceEECCCCCEEEEEeCCC
Confidence 469999999888754 48899999999999887764 222211 11112235689999999998876 57
Q ss_pred CcEEEeeCCCC
Q 000080 2293 GTVCTWQLEVG 2303 (2389)
Q Consensus 2293 gTVkLWDl~tg 2303 (2389)
++|.+||+.++
T Consensus 146 ~~v~~~d~~~~ 156 (368)
T d1mdah_ 146 SAAAGLSVPGA 156 (368)
T ss_dssp SCEEEEEETTT
T ss_pred CeEEEEECCCC
Confidence 99999999986
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.84 E-value=6.6e-06 Score=99.24 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=98.2
Q ss_pred EEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEEeeCCCC
Q 000080 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVG 2303 (2389)
Q Consensus 2225 VAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkLWDl~tg 2303 (2389)
+++.|||+++..+ .++.+.+++..+.+.+++. |.+ ...+.|++||||+++ +++..|+||.+||+++.
T Consensus 223 ~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~I---Pvg--------ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 223 AAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYI---PVP--------KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp HHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEE---CCB--------SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred EEEecCCCEEEeC-CCCcEEEEcccCCceEEEE---eCC--------CCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence 4567788877654 4678888887666666655 232 224679999999965 77899999999998752
Q ss_pred Cc---cCcccceeeeecCC---CeeEEEEecCCCCEEEEeecCCCCCeEEEeeCC-------CCCC-CceEEE-----Ee
Q 000080 2304 GR---SNVRPMESCLCFSS---HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL-------APPT-SSRASI-----TC 2364 (2389)
Q Consensus 2304 gr---s~~k~l~tl~gHs~---~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l-------~~tg-~~v~sL-----~G 2364 (2389)
.. ..+.+..+..++.. ...-.+|.+ +|..+.|. ..|.+|..|++- .... ..+..+ .|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~---~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G 366 (441)
T d1qnia2 291 DDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTL---FIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG 366 (441)
T ss_dssp HHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEE---TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred hhHhhccCCcceEEEeecccccCcccceecC-CceEEEcc---cccceEEEeccchhhhhhccCCCceeEeccccccCCC
Confidence 10 01122222333321 123458999 89888775 489999999961 0111 124455 69
Q ss_pred ecCcEEEEeecccchhhhcccc
Q 000080 2365 HEGLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2365 H~~~V~svA~~~~~~~~~s~~~ 2386 (2389)
|...+.+.+++|+|+|.+|-|.
T Consensus 367 H~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 367 HNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEETTTTSTTCCCCEEEEEES
T ss_pred CCccccccccCCCCcEEEecCc
Confidence 9999999999999999987653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.66 E-value=0.00026 Score=81.55 Aligned_cols=151 Identities=10% Similarity=0.057 Sum_probs=90.5
Q ss_pred eEEEEEEcCCCCeEEEEeC-CCcEEEeecCC-CceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCcEEE
Q 000080 2221 STRAFSSHPLRPFFLVGSS-NTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCT 2297 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~-DgTIRLWDl~t-Gk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgTVkL 2297 (2389)
+++.++|+|||++++++.. ...|.+|++.. |+....-. ... +.+ ....+.++|+|||+++ ++.-.+++|.+
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~-~~~---~~~--g~gPr~i~f~pdg~~~yv~~e~~~~V~v 219 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS-VDA---PDP--GDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-EEC---SST--TCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc-eee---cCC--CCceEEEEECCCCceEEEeccCCCEEEE
Confidence 4588999999998777653 44788887653 33321111 000 112 2568999999999866 66668999999
Q ss_pred eeCCCCCccCcccceeee-----------------ecCCCeeEEEEecCCCCEEEEeecCC---CCCeEEEeeCCCCCCC
Q 000080 2298 WQLEVGGRSNVRPMESCL-----------------CFSSHAMDVSYITSSGSVIAAAGHSS---NGINVVVWDTLAPPTS 2357 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~tl~-----------------gHs~~V~sVAFSP~DGslLASAG~sS---~D~TVrLWD~l~~tg~ 2357 (2389)
|++..+.. ..+.... .+......++++| ||++|.++..+. ....|..|++. ..+.
T Consensus 220 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~-~~g~ 294 (365)
T d1jofa_ 220 YVIDPATH---MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLR-DCGS 294 (365)
T ss_dssp EEECTTTC---CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEEC-TTSC
T ss_pred EEecCCCc---eEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEEEEEec-CCCc
Confidence 99976421 1111111 1223456799999 999988763211 12237777763 2222
Q ss_pred ceEEEE--e----ecCcEEEEeecc-cchhhhc
Q 000080 2358 SRASIT--C----HEGLYDLFLPLK-LLNFALS 2383 (2389)
Q Consensus 2358 ~v~sL~--G----H~~~V~svA~~~-~~~~~~s 2383 (2389)
+.... . .-..-+.++++| +|+|++-
T Consensus 295 -~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~v 326 (365)
T d1jofa_ 295 -IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAI 326 (365)
T ss_dssp -EEEEEEEEECSSCCTTCCCEEECTTCTTEEEE
T ss_pred -eeeEeEeeEEEcCCCCccEEEecCCCCCEEEE
Confidence 22211 1 123456789997 7888753
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.0046 Score=65.49 Aligned_cols=196 Identities=17% Similarity=0.134 Sum_probs=103.9
Q ss_pred cceeecCCCCCCeEEEEecCCc----EEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEEec-
Q 000080 42 STIDWLPDFAGYSWVAYGASSL----LVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAAS- 116 (2389)
Q Consensus 42 ~ai~wlpD~~G~~~vAYasg~~----vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaASy- 116 (2389)
..++|||| | .+|||.+... +++..... . .-++..... ..+....|||+ +..|+...
T Consensus 42 ~sP~wSPD--G-k~IAf~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~---~~~~~~~~spd---g~~i~~~~~ 102 (269)
T d2hqsa1 42 MSPAWSPD--G-SKLAYVTFESGRSALVIQTLAN---G-------AVRQVASFP---RHNGAPAFSPD---GSKLAFALS 102 (269)
T ss_dssp EEEEECTT--S-SEEEEEECTTSSCEEEEEETTT---C-------CEEEEECCS---SCEEEEEECTT---SSEEEEEEC
T ss_pred eeeEECCC--C-CEEEEEEeeccCcceeeeeccc---C-------ceeEEeeee---cccccceecCC---CCeeeEeee
Confidence 46799999 8 4999974433 44433111 1 112333322 25888999998 55555332
Q ss_pred -CCeEEEEeeCCCCCCCCccceeeEEecccceEEEEeecCCCCeEEEEecc---eEEee--ccCCcEEEEEEeeccccce
Q 000080 117 -ENCIFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGME---TVLWK--KKNTLWEIAWKFKENYPQN 190 (2389)
Q Consensus 117 -DntIRVw~~d~~~~kgd~~W~~~~tL~hssTV~sIAWSpdG~rLaSggdD---V~IW~--~~~s~Wecvwt~~~~~~~~ 190 (2389)
++...++.... .... ...............|+++++.+...+.. ..||. ...+....+ ......
T Consensus 103 ~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~----~~~~~~ 172 (269)
T d2hqsa1 103 KTGSLNLYVMDL--ASGQ----IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI----TWEGSQ 172 (269)
T ss_dssp TTSSCEEEEEET--TTCC----EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC----CCSSSE
T ss_pred cCCccceeeccc--cccc----ceeeeeccccccccccccccccceecccccCCceEeeeecccccceee----eccccc
Confidence 22333332220 0111 01111233344566788888887765542 44554 444444443 233455
Q ss_pred EEEEeecCCCc-eEeeecccccccCCCCCCCceeEEEeeCCCccceeecccCCCCeeEEEeccCCCCCCCCCCccccCce
Q 000080 191 LVSATWSIEGP-SATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHV 269 (2389)
Q Consensus 191 ivsvaWSpdG~-fATag~dikf~~~~~~~~~kpV~V~~~dg~~~~~~ve~aH~qdVn~V~W~Ps~~~~~~~Dgk~~~~nI 269 (2389)
....+|||||. ++..+.... ...++..+.+.... ....++..+....|+| ||++ |
T Consensus 173 ~~~~~~spdg~~~~~~~~~~~-----------~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SP--------DG~~----i 228 (269)
T d2hqsa1 173 NQDADVSSDGKFMVMVSSNGG-----------QQHIAKQDLATGGV-QVLSSTFLDETPSLAP--------NGTM----V 228 (269)
T ss_dssp EEEEEECTTSSEEEEEEECSS-----------CEEEEEEETTTCCE-EECCCSSSCEEEEECT--------TSSE----E
T ss_pred ccccccccccceeEEEeecCC-----------ceeeeEeecccccc-eEeecCccccceEECC--------CCCE----E
Confidence 66779999999 776655321 11122223333222 2335666778889999 8887 3
Q ss_pred EEeeecCCeEEEEEeecCCcc
Q 000080 270 LLTCCLDGTVRLWCEMDSGKT 290 (2389)
Q Consensus 270 LAScSdDgTVRLW~e~d~Gk~ 290 (2389)
+-++...+.-+||...-.|+.
T Consensus 229 ~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 229 IYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp EEEEEETTEEEEEEEETTSCC
T ss_pred EEEEcCCCCcEEEEEECCCCC
Confidence 444445555566665544543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.44 E-value=0.0006 Score=75.87 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=81.6
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~ 2301 (2389)
+..++++|||+++++...+++|+-||. .|+...... ....+.+++|+|||+.+++...++.+..|+..
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p-~g~~~~~~~-----------~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITP-DGNQQIHAT-----------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEE-----------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeC-CCCEEEEEc-----------CCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence 467899999999999999999999996 455333221 12568999999999999999999999998876
Q ss_pred CCCccCcccceee--eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2302 VGGRSNVRPMESC--LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2302 tggrs~~k~l~tl--~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
... .....+ .......+++++.+ +|+++++. +.++.|..+|.
T Consensus 98 ~~~----~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~---~~~~~i~~~~~ 141 (302)
T d2p4oa1 98 KSD----GTVETLLTLPDAIFLNGITPLS-DTQYLTAD---SYRGAIWLIDV 141 (302)
T ss_dssp CTT----SCEEEEEECTTCSCEEEEEESS-SSEEEEEE---TTTTEEEEEET
T ss_pred ccc----cceeeccccCCccccceeEEcc-CCCEEeec---cccccceeeec
Confidence 532 111222 12345678999999 89998874 45666666664
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.0026 Score=67.54 Aligned_cols=145 Identities=10% Similarity=0.005 Sum_probs=85.7
Q ss_pred EEEEEEcCCCCeEEEEeCCC---cEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCC-cEEE
Q 000080 2222 TRAFSSHPLRPFFLVGSSNT---HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-TVCT 2297 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~Dg---TIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~Dg-TVkL 2297 (2389)
+.+-+|||||+.||-.+.+. .+.+.+...+....... +........|||||+.++..+.+. ...+
T Consensus 41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~spdg~~i~~~~~~~~~~~~ 109 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----------FPRHNGAPAFSPDGSKLAFALSKTGSLNL 109 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-----------CSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee-----------eecccccceecCCCCeeeEeeecCCccce
Confidence 46789999999998765444 46666776665432221 236678889999999888755421 1111
Q ss_pred eeCCCCC----------c------------------------------cCcccceeeeecCCCeeEEEEecCCCCEEEEe
Q 000080 2298 WQLEVGG----------R------------------------------SNVRPMESCLCFSSHAMDVSYITSSGSVIAAA 2337 (2389)
Q Consensus 2298 WDl~tgg----------r------------------------------s~~k~l~tl~gHs~~V~sVAFSP~DGslLASA 2337 (2389)
+...... . ........+..+.......+++| +|+.++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~ 188 (269)
T d2hqsa1 110 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS-DGKFMVMV 188 (269)
T ss_dssp EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT-TSSEEEEE
T ss_pred eecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccccccc-ccceeEEE
Confidence 1111000 0 00011122233344455678999 89998876
Q ss_pred ecCCCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecccchhhh
Q 000080 2338 GHSSNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLKLLNFAL 2382 (2389)
Q Consensus 2338 G~sS~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~~~~~~~ 2382 (2389)
. ..++...||..... +... .+..+.+......++|+|++++
T Consensus 189 ~--~~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~p~~SPDG~~i~ 229 (269)
T d2hqsa1 189 S--SNGGQQHIAKQDLA-TGGV-QVLSSTFLDETPSLAPNGTMVI 229 (269)
T ss_dssp E--ECSSCEEEEEEETT-TCCE-EECCCSSSCEEEEECTTSSEEE
T ss_pred e--ecCCceeeeEeecc-cccc-eEeecCccccceEECCCCCEEE
Confidence 4 35555566655322 2233 4445677788899999999876
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.19 E-value=0.00047 Score=82.90 Aligned_cols=141 Identities=10% Similarity=0.011 Sum_probs=94.7
Q ss_pred EEEEeCCCcEEEeecCCCceeeEecccC-CCC------------------C-CCCCCCCCEEEEEECCCCCEE-EEEeCC
Q 000080 2234 FLVGSSNTHIYLWEFGKDKATATYGVLP-AAN------------------V-PPPYALASISALQFDHYGHRF-ASAALD 2292 (2389)
Q Consensus 2234 LASGS~DgTIRLWDl~tGk~l~Tl~vl~-gh~------------------~-p~~GH~~~V~sVaFSPDG~~L-ASgS~D 2292 (2389)
++||+.+|+|++||+.+++.++++-++. +.. . .--.|......+.++|||++| ++...+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 7899999999999999999887764321 000 0 001133456777789999877 556689
Q ss_pred CcEEEeeCCCCCccCcccceeee-ecCCCeeEEEEecCCCC--EEEEeecCCCCC-----------------eEEEeeCC
Q 000080 2293 GTVCTWQLEVGGRSNVRPMESCL-CFSSHAMDVSYITSSGS--VIAAAGHSSNGI-----------------NVVVWDTL 2352 (2389)
Q Consensus 2293 gTVkLWDl~tggrs~~k~l~tl~-gHs~~V~sVAFSP~DGs--lLASAG~sS~D~-----------------TVrLWD~l 2352 (2389)
++|.+||+.++. +...+. .+......++|+| ||+ +++.++ ++. .+..+|.
T Consensus 94 ~rVavIDl~t~k-----~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~---~~~v~~~~dg~~~~~~~~~~~~~~iD~- 163 (441)
T d1qnia2 94 TRVARIRLDIMK-----TDKITHIPNVQAIHGLRLQK-VPKTNYVFCNA---EFVIPQPNDGTDFSLDNSYTMFTAIDA- 163 (441)
T ss_dssp TEEEEEETTTTE-----EEEEEECTTCCCEEEEEECC-SSBCCEEEEEE---CSCEESSCSSSCCCGGGEEEEEEEEET-
T ss_pred CEEEEEECCCCc-----EeeEEecCCCCCccceEEec-cCCEEEEEecc---CCcccccCcccccccccccceEEeecC-
Confidence 999999999872 333322 3556788999999 888 454432 332 2344675
Q ss_pred CCCCCceEEEEeecCcEEEEeecccchhhhcccc
Q 000080 2353 APPTSSRASITCHEGLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2353 ~~tg~~v~sL~GH~~~V~svA~~~~~~~~~s~~~ 2386 (2389)
.+.+....+.- .+....++++|+|+||..-|.
T Consensus 164 -~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 164 -ETMDVAWQVIV-DGNLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp -TTCSEEEEEEE-SSCCCCEEECSSSSEEEEEES
T ss_pred -ccceeeEEEec-CCCccceEECCCCCEEEEEec
Confidence 34444444443 345789999999999987774
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.19 E-value=0.0041 Score=68.30 Aligned_cols=140 Identities=11% Similarity=0.143 Sum_probs=107.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
+.+++.++|.++++....+.+.++|. +|+.+.++.. ..+......++++++|+.+++....++|+++|..
T Consensus 117 ~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~--------~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~- 186 (279)
T d1q7fa_ 117 RGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGC--------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE- 186 (279)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEEC--------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-
T ss_pred ceeccccCCcEEEEeeccceeeEecc-CCceeecccc--------cccccccceeeeccceeEEeeeccccceeeeecC-
Confidence 78899999999999888888999995 6888877742 1345778999999999999999999999999975
Q ss_pred CCccCcccceee--eecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEeec--CcEEEEeecccc
Q 000080 2303 GGRSNVRPMESC--LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE--GLYDLFLPLKLL 2378 (2389)
Q Consensus 2303 ggrs~~k~l~tl--~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~GH~--~~V~svA~~~~~ 2378 (2389)
| +.+.++ .++.....+|++.| +|+++++-. ..++.|.++| +.++.+.++.... ..-+.||..++|
T Consensus 187 G-----~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~--~~~~~v~~f~---~~G~~~~~~~~~~~~~~p~~vav~~dG 255 (279)
T d1q7fa_ 187 G-----QYLRQIGGEGITNYPIGVGINS-NGEILIADN--HNNFNLTIFT---QDGQLISALESKVKHAQCFDVALMDDG 255 (279)
T ss_dssp C-----CEEEEESCTTTSCSEEEEEECT-TCCEEEEEC--SSSCEEEEEC---TTSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred C-----ceeeeecccccccCCccccccc-CCeEEEEEC--CCCcEEEEEC---CCCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence 2 233333 34556678999999 899888632 3456799999 4677788876543 346789999999
Q ss_pred hhhhc
Q 000080 2379 NFALS 2383 (2389)
Q Consensus 2379 ~~~~s 2383 (2389)
+..+.
T Consensus 256 ~l~V~ 260 (279)
T d1q7fa_ 256 SVVLA 260 (279)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 86553
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.13 E-value=0.0017 Score=74.58 Aligned_cols=146 Identities=15% Similarity=-0.003 Sum_probs=88.5
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCcEEEeeC
Q 000080 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQL 2300 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgTVkLWDl 2300 (2389)
|....+.+++......+.+.+.++.... . ....+ ....+++|+|+|||+++.+++. ..+|.++++
T Consensus 109 v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~q-----------~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~ 174 (365)
T d1jofa_ 109 VYANPFYKFAGYGNVFSVSETGKLEKNV--Q-NYEYQ-----------ENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEE--E-EEECC-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEeEccCCCCcceeEeeeecceecCcc--c-CcccC-----------CCCcceEEEECCCCCEEEEeeCCCCEEEEEEc
Confidence 4555666666655555555554444321 0 11111 1134899999999998887764 457888876
Q ss_pred CCCCccCcccceeee--ecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEEe--------------
Q 000080 2301 EVGGRSNVRPMESCL--CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-------------- 2364 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~--gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~G-------------- 2364 (2389)
...+. +....... ......+.++|+| ||+++..+. ..+++|.+||+...+...+.....
T Consensus 175 ~~~g~--~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~--e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (365)
T d1jofa_ 175 LASGE--VELVGSVDAPDPGDHPRWVAMHP-TGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE 249 (365)
T ss_dssp CTTSC--EEEEEEEECSSTTCCEEEEEECT-TSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred cCCCc--eeeccceeecCCCCceEEEEECC-CCceEEEec--cCCCEEEEEEecCCCceEEEEeeeeccccccccccccc
Confidence 54321 11222221 2346778999999 999886654 578999999984333333333332
Q ss_pred ---ecCcEEEEeecccchhhhcccc
Q 000080 2365 ---HEGLYDLFLPLKLLNFALSKCR 2386 (2389)
Q Consensus 2365 ---H~~~V~svA~~~~~~~~~s~~~ 2386 (2389)
+..+...++.+|+|+++..-.|
T Consensus 250 ~~~~~~~~~~i~~spdG~~lyvsnr 274 (365)
T d1jofa_ 250 TGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred cccccCCccceEECCCCCEEEEEcc
Confidence 2234568899999999766544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.96 E-value=0.0058 Score=67.06 Aligned_cols=109 Identities=9% Similarity=0.185 Sum_probs=83.9
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-CCcEEEeeCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQLE 2301 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-DgTVkLWDl~ 2301 (2389)
..+++.++|+++++....+.|+++|. +|+.+.++.. .|+...-..|+++|+|+.+++-+. ++.|.+++-+
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~--------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~ 230 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGG--------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 230 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESC--------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred ceeeeccceeEEeeeccccceeeeec-CCceeeeecc--------cccccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence 77899999999999999999999996 7888877731 245567899999999998887654 4579999853
Q ss_pred CCCccCcccceeeee--cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2302 VGGRSNVRPMESCLC--FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2302 tggrs~~k~l~tl~g--Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
| +.+.++.. .....++||+.| ||+++++. .++.|++|+.
T Consensus 231 -G-----~~~~~~~~~~~~~~p~~vav~~-dG~l~V~~----~n~~v~~fr~ 271 (279)
T d1q7fa_ 231 -G-----QLISALESKVKHAQCFDVALMD-DGSVVLAS----KDYRLYIYRY 271 (279)
T ss_dssp -S-----CEEEEEEESSCCSCEEEEEEET-TTEEEEEE----TTTEEEEEEC
T ss_pred -C-----CEEEEEeCCCCCCCEeEEEEeC-CCcEEEEe----CCCeEEEEEe
Confidence 4 23334322 224578999999 99887763 6789999997
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.0026 Score=75.89 Aligned_cols=139 Identities=6% Similarity=-0.065 Sum_probs=91.0
Q ss_pred EEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEe---------CCCcEE
Q 000080 2226 SSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA---------LDGTVC 2296 (2389)
Q Consensus 2226 AFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS---------~DgTVk 2296 (2389)
.|.+++.++.. ..||.|.+||+.+++....+. .+. -+.-.+....|||||+.++.+. ..+.+-
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~---~~~----~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~ 94 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIE---GKK----IESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEEC---TTT----TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEc---Ccc----ccccccceeEECCCCCeEEEEEcccceeEeeccccEE
Confidence 57888887765 467899999999887543332 111 1223467889999999988764 356788
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE---------EeecC
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---------TCHEG 2367 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL---------~GH~~ 2367 (2389)
++|++++. .+++.........+....||| ||+.||-. .+++|.+.+. ..+..++.. .|..+
T Consensus 95 i~d~~~~~---~~~l~~~~~~~~~l~~~~wSP-DG~~iafv----~~~nl~~~~~--~~~~~~~lt~~g~~~~i~nG~~d 164 (465)
T d1xfda1 95 LSKIPHGD---PQSLDPPEVSNAKLQYAGWGP-KGQQLIFI----FENNIYYCAH--VGKQAIRVVSTGKEGVIYNGLSD 164 (465)
T ss_dssp EEESSSCC---CEECCCTTCCSCCCSBCCBCS-STTCEEEE----ETTEEEEESS--SSSCCEEEECCCBTTTEEEEECC
T ss_pred EEEccCCc---eeeccCccCCccccceeeecc-CCceEEEE----ecceEEEEec--CCCceEEEecccCcceeeccccc
Confidence 88999863 234433333344555678999 99999986 5788888886 233333322 23332
Q ss_pred cE---------EEEeecccchhhh
Q 000080 2368 LY---------DLFLPLKLLNFAL 2382 (2389)
Q Consensus 2368 ~V---------~svA~~~~~~~~~ 2382 (2389)
++ ..+-.||+|++++
T Consensus 165 ~vyeee~~~~~~a~~WSPDgk~ia 188 (465)
T d1xfda1 165 WLYEEEILKTHIAHWWSPDGTRLA 188 (465)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEE
T ss_pred hhhhhhhccccceEEECCCCCeEE
Confidence 22 3566799998764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.02 E-value=0.024 Score=61.38 Aligned_cols=139 Identities=9% Similarity=0.059 Sum_probs=96.0
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
..|+++++|.++++...++.|++++-+++..+.... .....+.|+++++|+.+++-..+..+...+...
T Consensus 60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-----------~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~ 128 (260)
T d1rwia_ 60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-----------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS 128 (260)
T ss_dssp CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-----------SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred eEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-----------eeeecccccccccceeEeecccccccccccccc
Confidence 456999999999999999999998876665443321 125679999999999999888888788777654
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecCcEEEEeecccchhh
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~~V~svA~~~~~~~~ 2381 (2389)
.. .......+. ...+++++.| +|+++++. ..++.|..+|. .+.....+ ...-+.-..|+..++|+..
T Consensus 129 ~~----~~~~~~~~~-~~p~~i~~~~-~g~~~v~~---~~~~~i~~~d~---~~~~~~~~~~~~~~~p~gi~~d~~g~l~ 196 (260)
T d1rwia_ 129 KT----QTVLPFTGL-NDPDGVAVDN-SGNVYVTD---TDNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAGTVY 196 (260)
T ss_dssp SS----CEECCCCSC-CSCCEEEECT-TCCEEEEE---GGGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTCCEE
T ss_pred ce----eeeeeeccc-CCcceeeecC-CCCEeeec---ccccccccccc---ccceeeeeeccccCCCccceeeeeeeee
Confidence 31 112222222 3457899999 88988764 46678888986 23333333 2455566788898888765
Q ss_pred hcc
Q 000080 2382 LSK 2384 (2389)
Q Consensus 2382 ~s~ 2384 (2389)
++-
T Consensus 197 vsd 199 (260)
T d1rwia_ 197 VTE 199 (260)
T ss_dssp EEE
T ss_pred eee
Confidence 543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.01 E-value=0.016 Score=63.96 Aligned_cols=100 Identities=10% Similarity=0.138 Sum_probs=70.8
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2272 ~~V~sVaFSPDG~~LASgS~DgTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
.++..|+++|||+.+++...+++|..||.... ...+......+..++|.| ||+++++. ..++.+.+|+.
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-------~~~~~~~~~~~~gla~~~-dG~l~v~~---~~~~~~~~~~~ 96 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-------QQIHATVEGKVSGLAFTS-NGDLVATG---WNADSIPVVSL 96 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-------EEEEEECSSEEEEEEECT-TSCEEEEE---ECTTSCEEEEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-------EEEEEcCCCCcceEEEcC-CCCeEEEe---cCCceEEEEEe
Confidence 47899999999999999999999988886532 233445667899999999 99998875 35667777775
Q ss_pred CCCCCCceEEEEe--ecCcEEEEeecccchhhhc
Q 000080 2352 LAPPTSSRASITC--HEGLYDLFLPLKLLNFALS 2383 (2389)
Q Consensus 2352 l~~tg~~v~sL~G--H~~~V~svA~~~~~~~~~s 2383 (2389)
.. .......+.. .....+.++..++|+...+
T Consensus 97 ~~-~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~ 129 (302)
T d2p4oa1 97 VK-SDGTVETLLTLPDAIFLNGITPLSDTQYLTA 129 (302)
T ss_dssp EC-TTSCEEEEEECTTCSCEEEEEESSSSEEEEE
T ss_pred cc-cccceeeccccCCccccceeEEccCCCEEee
Confidence 32 2222333332 3345677888888876543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.91 E-value=0.13 Score=57.40 Aligned_cols=142 Identities=11% Similarity=0.045 Sum_probs=89.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC--CcEEEeeC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--GTVCTWQL 2300 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D--gTVkLWDl 2300 (2389)
..++|.++|+++++-..++.|+-||..+++....+. + .......++|+|||+.+++...| .+..+..+
T Consensus 43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~--~--------~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~ 112 (319)
T d2dg1a1 43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--S--------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA 112 (319)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--C--------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe--C--------CCCCeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence 456999999999998899999999987665554442 1 12457899999999998876554 34445444
Q ss_pred CCCCccCcccceeeeec---CCCeeEEEEecCCCCEEEEeecC-CCCCeEEEeeCCCCCCCceEEEEeecCcEEEEeecc
Q 000080 2301 EVGGRSNVRPMESCLCF---SSHAMDVSYITSSGSVIAAAGHS-SNGINVVVWDTLAPPTSSRASITCHEGLYDLFLPLK 2376 (2389)
Q Consensus 2301 ~tggrs~~k~l~tl~gH---s~~V~sVAFSP~DGslLASAG~s-S~D~TVrLWD~l~~tg~~v~sL~GH~~~V~svA~~~ 2376 (2389)
...+ ..+.....+ ....+++++.| +|++.++.... ..+..-.+|.+. +.++.+..+...-..-+.+++++
T Consensus 113 ~~~~----~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~-~dg~~~~~~~~~~~~pnGia~s~ 186 (319)
T d2dg1a1 113 TENG----DNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVS-PDFRTVTPIIQNISVANGIALST 186 (319)
T ss_dssp CTTS----CSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEEC-TTSCCEEEEEEEESSEEEEEECT
T ss_pred cCCC----ceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEe-cccceeEEEeeccceeeeeeecc
Confidence 3321 112222212 24578999999 99988873100 011222344432 34555666655555567899999
Q ss_pred cchh
Q 000080 2377 LLNF 2380 (2389)
Q Consensus 2377 ~~~~ 2380 (2389)
+|++
T Consensus 187 dg~~ 190 (319)
T d2dg1a1 187 DEKV 190 (319)
T ss_dssp TSSE
T ss_pred ccce
Confidence 9874
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.83 E-value=0.054 Score=58.50 Aligned_cols=139 Identities=9% Similarity=0.068 Sum_probs=94.5
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCcEEEeeCCC
Q 000080 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgTVkLWDl~t 2302 (2389)
+.|++.++|+++++-..+..+...+..... ...+. .. -....+.|+++|+|+.+++...++.|..+|.+.
T Consensus 101 ~~iavd~~g~i~v~d~~~~~~~~~~~~~~~-~~~~~-~~--------~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~ 170 (260)
T d1rwia_ 101 EGLAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVLP-FT--------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 170 (260)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTTCSS-CEECC-CC--------SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred ccccccccceeEeeccccccccccccccce-eeeee-ec--------ccCCcceeeecCCCCEeeecccccccccccccc
Confidence 788999999999988888888888865433 22221 11 124457899999999999999999999999875
Q ss_pred CCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEE-EeecCcEEEEeecccchhh
Q 000080 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGLYDLFLPLKLLNFA 2381 (2389)
Q Consensus 2303 ggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL-~GH~~~V~svA~~~~~~~~ 2381 (2389)
.. ... .....-.....|++.+ +|.++++- ...+.|..++. .+.....+ ...-.....++++++|+-.
T Consensus 171 ~~----~~~-~~~~~~~~p~gi~~d~-~g~l~vsd---~~~~~i~~~~~---~~~~~~~~~~~~~~~P~~i~~d~~g~l~ 238 (260)
T d1rwia_ 171 NN----QVV-LPFTDITAPWGIAVDE-AGTVYVTE---HNTNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRTVY 238 (260)
T ss_dssp CC----EEE-CCCSSCCSEEEEEECT-TCCEEEEE---TTTTEEEEECT---TCSCCEECCCCSCCCEEEEEECTTCCEE
T ss_pred ce----eee-eeccccCCCccceeee-eeeeeeee---cCCCEEEEEeC---CCCeEEEEccCCCCCeEEEEEeCCCCEE
Confidence 42 111 1123345678899999 89998874 46677777774 23322322 2233456789999988754
Q ss_pred hc
Q 000080 2382 LS 2383 (2389)
Q Consensus 2382 ~s 2383 (2389)
++
T Consensus 239 va 240 (260)
T d1rwia_ 239 VA 240 (260)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.012 Score=70.09 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=73.7
Q ss_pred eEEEEEEcCCCCeEEEEe---------CCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC
Q 000080 2221 STRAFSSHPLRPFFLVGS---------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS---------~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~ 2291 (2389)
.+.+..|||||++++-+. ..+.+.++|+.+|+... +.. . .+....+....|||||+.+|-..
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~--~-----~~~~~~l~~~~wSPDG~~iafv~- 132 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDP--P-----EVSNAKLQYAGWGPKGQQLIFIF- 132 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCC--T-----TCCSCCCSBCCBCSSTTCEEEEE-
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-ccC--c-----cCCccccceeeeccCCceEEEEe-
Confidence 346678999999877653 45788999998887533 221 1 11224566788999999999887
Q ss_pred CCcEEEeeCCCCCccCcccceeeeecCCCe-----------------eEEEEecCCCCEEEEeecCCCCCeEEEeeC
Q 000080 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHA-----------------MDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2292 DgTVkLWDl~tggrs~~k~l~tl~gHs~~V-----------------~sVAFSP~DGslLASAG~sS~D~TVrLWD~ 2351 (2389)
++.|.+.+..++. . .. .+..|-.+.| ..+-||| ||+.||..- -++..|+.+.+
T Consensus 133 ~~nl~~~~~~~~~--~-~~-lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~--~D~s~V~~~~~ 202 (465)
T d1xfda1 133 ENNIYYCAHVGKQ--A-IR-VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAA--INDSRVPIMEL 202 (465)
T ss_dssp TTEEEEESSSSSC--C-EE-EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEE--EECTTSCEEEE
T ss_pred cceEEEEecCCCc--e-EE-EecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEE--ecccccceeec
Confidence 4667787776642 1 11 1111211111 3577999 999999863 35565666654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.62 E-value=0.028 Score=59.03 Aligned_cols=96 Identities=10% Similarity=0.132 Sum_probs=61.8
Q ss_pred EEcCC--CCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeC-C---C--cEEE
Q 000080 2226 SSHPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-D---G--TVCT 2297 (2389)
Q Consensus 2226 AFsPd--G~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~-D---g--TVkL 2297 (2389)
..+|| |+.+|-.+. +.|.+.|+..|+..+ +. . +...+...+|||||++||-.+. + . .|.+
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~~-Lt---~-------~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~ 72 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRK-IV---S-------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYF 72 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEEE-EE---C-------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEEE-Ee---c-------CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEE
Confidence 46799 998887654 468888998777543 32 1 2366899999999999996542 2 2 2555
Q ss_pred eeCCCCCccCccccee----eeecCCCeeEEEEecCCCCEEEEe
Q 000080 2298 WQLEVGGRSNVRPMES----CLCFSSHAMDVSYITSSGSVIAAA 2337 (2389)
Q Consensus 2298 WDl~tggrs~~k~l~t----l~gHs~~V~sVAFSP~DGslLASA 2337 (2389)
.++.++. .+.+.. ..+........+|+| ||+.|+..
T Consensus 73 ~~~~~g~---~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~ 112 (281)
T d1k32a2 73 YNGENGE---IKRITYFSGKSTGRRMFTDVAGFDP-DGNLIIST 112 (281)
T ss_dssp EETTTTE---EEECCCCCEEEETTEECSEEEEECT-TCCEEEEE
T ss_pred EEecCCc---eEEeeecCCCccCccccccccccCC-CCCEEEEE
Confidence 6666542 111111 112223456789999 99999874
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.49 E-value=0.29 Score=51.05 Aligned_cols=102 Identities=12% Similarity=0.134 Sum_probs=60.6
Q ss_pred eecCCCCCCeEEEEecCCcEEEEeCCCCcccccccccccceeeeeccCCCCCeeEEEEcCCCCCCCcEEE-ec----CCe
Q 000080 45 DWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAA-AS----ENC 119 (2389)
Q Consensus 45 ~wlpD~~G~~~vAYasg~~vVI~~l~SP~~~~e~~~~p~~~Qviegh~d~~dVk~VaWSPd~~~~GeIaA-Sy----Dnt 119 (2389)
..+||+.|. .|||.+...|.+..++. + +. +|+-.+.+ .+...+|||| +..||- +. +..
T Consensus 5 ~~sPdi~G~-~v~f~~~~dl~~~d~~~---g-~~------~~Lt~~~~---~~~~p~~SPD---G~~iaf~~~~~~~~~~ 67 (281)
T d1k32a2 5 LLNPDIHGD-RIIFVCCDDLWEHDLKS---G-ST------RKIVSNLG---VINNARFFPD---GRKIAIRVMRGSSLNT 67 (281)
T ss_dssp CEEEEEETT-EEEEEETTEEEEEETTT---C-CE------EEEECSSS---EEEEEEECTT---SSEEEEEEEESTTCCE
T ss_pred ccCCCCCCC-EEEEEeCCcEEEEECCC---C-CE------EEEecCCC---cccCEEECCC---CCEEEEEEeeCCCCCc
Confidence 457998884 99999999999988665 2 11 23333322 4788999999 666773 22 233
Q ss_pred EEEEeeCCCCCCCCcc---ceeeEEecccceEEEEeecCCCCeEEEEec
Q 000080 120 IFVFAHDSASSKGSFC---WSQNAILVQGTKVEAIEWTGSGDGIVAGGM 165 (2389)
Q Consensus 120 IRVw~~d~~~~kgd~~---W~~~~tL~hssTV~sIAWSpdG~rLaSggd 165 (2389)
..||.-+. ..+... ............++..+|+|+|++|+....
T Consensus 68 ~~i~~~~~--~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 68 ADLYFYNG--ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp EEEEEEET--TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred eEEEEEEe--cCCceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence 45665431 112100 000111112335678999999999996533
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.09 E-value=0.26 Score=54.90 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=89.4
Q ss_pred EEEEEEcCCCCeEEEEeCC------CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEE-EEEeCCCc
Q 000080 2222 TRAFSSHPLRPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGT 2294 (2389)
Q Consensus 2222 VrsVAFsPdG~~LASGS~D------gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~L-ASgS~DgT 2294 (2389)
...+++.|+|++.++.... +.+..++.. ++.+..+. . ....-+.|+|+|||++| .+-+..+.
T Consensus 132 ~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~--~--------~~~~pnGia~s~dg~~lyvad~~~~~ 200 (319)
T d2dg1a1 132 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPII--Q--------NISVANGIALSTDEKVLWVTETTANR 200 (319)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEE--E--------EESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred CcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEe--e--------ccceeeeeeeccccceEEEecccCCc
Confidence 3678999999988875432 235555553 33333221 0 01335789999999855 66678899
Q ss_pred EEEeeCCCCCccCcccceee--eec--CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceEEEE------e
Q 000080 2295 VCTWQLEVGGRSNVRPMESC--LCF--SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT------C 2364 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl--~gH--s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~sL~------G 2364 (2389)
|..+|+...+. ...+.... ... ...-..+++.+ +|++.++. ..++.|.++| +.++.+..+. +
T Consensus 201 I~~~d~~~~g~-~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~---~~~g~V~~~~---p~G~~l~~i~~P~~~~~ 272 (319)
T d2dg1a1 201 LHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAM---YGQGRVLVFN---KRGYPIGQILIPGRDEG 272 (319)
T ss_dssp EEEEEECTTSS-SEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEE---ETTTEEEEEC---TTSCEEEEEECTTGGGT
T ss_pred eEEEEEcCCCc-eeccccceeeeccCCccceeeeeEcC-CCCEEEEE---cCCCEEEEEC---CCCcEEEEEeCCCcCCC
Confidence 99999875431 11111110 011 12234699998 89987764 3678999999 4677777775 4
Q ss_pred ecCcEEEEeecccchh
Q 000080 2365 HEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2365 H~~~V~svA~~~~~~~ 2380 (2389)
|...++|+++.+.++.
T Consensus 273 ~~~~~~~~~~~~~~~~ 288 (319)
T d2dg1a1 273 HMLRSTHPQFIPGTNQ 288 (319)
T ss_dssp CSCBCCEEEECTTSCE
T ss_pred cCceeeeEEEeCCCCE
Confidence 5667889999887654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.65 E-value=0.18 Score=56.50 Aligned_cols=114 Identities=7% Similarity=0.198 Sum_probs=79.2
Q ss_pred EEEEEcCCCC-----eEEEEeCCCcEEEeecCCCceeeE---ecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCCCc
Q 000080 2223 RAFSSHPLRP-----FFLVGSSNTHIYLWEFGKDKATAT---YGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2389)
Q Consensus 2223 rsVAFsPdG~-----~LASGS~DgTIRLWDl~tGk~l~T---l~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~DgT 2294 (2389)
..|+|+|++. ++++-+..+.|+.+|+.....+.. +..+++ .+...-..+++.++|+.+++....+.
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~------~~~~~pdGiavD~~GnlyVa~~~~g~ 248 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG------THEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC------CSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc------cccccceeeEEecCCcEEEEEcCCCE
Confidence 4579999875 677778889999998764433322 211111 12234568999999999999989999
Q ss_pred EEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCC-EEEEeecCCCCCeEEEeeC
Q 000080 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDT 2351 (2389)
Q Consensus 2295 VkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGs-lLASAG~sS~D~TVrLWD~ 2351 (2389)
|..+|.+.+ +....+........+++|.| ||+ +.+|. +.+++|.--|+
T Consensus 249 I~~~dp~~g-----~~~~~i~~p~~~~t~~afg~-d~~~lyVt~---~~~g~i~~~~~ 297 (314)
T d1pjxa_ 249 IEVFGPDGG-----QPKMRIRCPFEKPSNLHFKP-QTKTIFVTE---HENNAVWKFEW 297 (314)
T ss_dssp EEEECTTCB-----SCSEEEECSSSCEEEEEECT-TSSEEEEEE---TTTTEEEEEEC
T ss_pred EEEEeCCCC-----EEEEEEECCCCCEEEEEEeC-CCCEEEEEE---CCCCcEEEEEC
Confidence 999998865 24444555556788999998 886 55654 46677766665
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.34 E-value=0.27 Score=54.92 Aligned_cols=140 Identities=6% Similarity=0.040 Sum_probs=88.7
Q ss_pred EEEEEcCCCCeEEEEeC---------------CCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC---
Q 000080 2223 RAFSSHPLRPFFLVGSS---------------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH--- 2284 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~---------------DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~--- 2284 (2389)
..++|.|+|.+.+|-+. +|.|..++. .|+....... ...-+.|+|+||++
T Consensus 120 ndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~-----------~~~pNGi~~~~d~d~~~ 187 (314)
T d1pjxa_ 120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA-----------FQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE-----------ESSEEEEEEEECTTSCE
T ss_pred cEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC-----------cceeeeeEECCCCCcce
Confidence 55799999999888542 234444443 3443332211 12347899999885
Q ss_pred --EEEEEeCCCcEEEeeCCCCCcc-Ccccceeeeec-CCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE
Q 000080 2285 --RFASAALDGTVCTWQLEVGGRS-NVRPMESCLCF-SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA 2360 (2389)
Q Consensus 2285 --~LASgS~DgTVkLWDl~tggrs-~~k~l~tl~gH-s~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~ 2360 (2389)
.+++-+..+.|..+|+...+.. +.+.+..+.+. ......+++.. +|++.++. ...+.|.++|. ..+..+.
T Consensus 188 ~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~---~~~g~I~~~dp--~~g~~~~ 261 (314)
T d1pjxa_ 188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVAN---WGSSHIEVFGP--DGGQPKM 261 (314)
T ss_dssp EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEE---ETTTEEEEECT--TCBSCSE
T ss_pred eEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEE---cCCCEEEEEeC--CCCEEEE
Confidence 5666678888988888654310 00111222221 22345799998 89987764 24678999995 2344567
Q ss_pred EEEeecCcEEEEeecccchh
Q 000080 2361 SITCHEGLYDLFLPLKLLNF 2380 (2389)
Q Consensus 2361 sL~GH~~~V~svA~~~~~~~ 2380 (2389)
.+.......+++|+.++|+.
T Consensus 262 ~i~~p~~~~t~~afg~d~~~ 281 (314)
T d1pjxa_ 262 RIRCPFEKPSNLHFKPQTKT 281 (314)
T ss_dssp EEECSSSCEEEEEECTTSSE
T ss_pred EEECCCCCEEEEEEeCCCCE
Confidence 77777778899999998863
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.58 E-value=4.1 Score=44.65 Aligned_cols=153 Identities=8% Similarity=-0.007 Sum_probs=96.4
Q ss_pred ccccCCCCcCceeEEEEEEcCCCCeEEEEeCC----CcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCC
Q 000080 2209 DYVDPPATVENISTRAFSSHPLRPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH 2284 (2389)
Q Consensus 2209 ~~~d~~atv~ni~VrsVAFsPdG~~LASGS~D----gTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~ 2284 (2389)
.+.+.+......+...+.+.|+|++.++...+ +.-.+|.+.+|+....+.. ...-..++|+||++
T Consensus 92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-----------~~~~Ng~~~s~d~~ 160 (295)
T d2ghsa1 92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-----------ISIPNSICFSPDGT 160 (295)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-----------ESSEEEEEECTTSC
T ss_pred EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-----------cCCcceeeecCCCc
Confidence 33333333444567889999999987775432 3446777777765544321 13357899999998
Q ss_pred E-EEEEeCCCcEEEeeCCCCC--ccCc-ccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCceE
Q 000080 2285 R-FASAALDGTVCTWQLEVGG--RSNV-RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA 2360 (2389)
Q Consensus 2285 ~-LASgS~DgTVkLWDl~tgg--rs~~-k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~v~ 2360 (2389)
. +.+-+..+.|..+++.... ..+. ..+....+-.+....+++.. +|++.++. -.++.|..+| +.++.+.
T Consensus 161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~---~~~g~V~~~d---p~G~~~~ 233 (295)
T d2ghsa1 161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNAR---WGEGAVDRYD---TDGNHIA 233 (295)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEE---ETTTEEEEEC---TTCCEEE
T ss_pred eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeee---eCCCceEEec---CCCcEee
Confidence 5 4566678888888775321 0010 11122223345567899998 88877653 2456788888 4677788
Q ss_pred EEEeecCcEEEEeec-ccch
Q 000080 2361 SITCHEGLYDLFLPL-KLLN 2379 (2389)
Q Consensus 2361 sL~GH~~~V~svA~~-~~~~ 2379 (2389)
.+.--...++++|+= ++++
T Consensus 234 ~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 234 RYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp EEECSCSBEEEEEEESTTSC
T ss_pred EecCCCCceEEEEEeCCCCC
Confidence 776555678888884 5554
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=90.97 E-value=0.55 Score=51.93 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=73.3
Q ss_pred EEEEEcCCCCeEEEEeCCC-----------cEEEeecCCCcee--eEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEE
Q 000080 2223 RAFSSHPLRPFFLVGSSNT-----------HIYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2389)
Q Consensus 2223 rsVAFsPdG~~LASGS~Dg-----------TIRLWDl~tGk~l--~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASg 2289 (2389)
...+...+|++++-|+.+. .+.+||..+++-. .... ..|.....++++.+||+.++.|
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---------~~~~~~~~~~~~~~~g~i~v~G 93 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---------TKHDMFCPGISMDGNGQIVVTG 93 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------CSCCCSSCEEEECTTSCEEEEC
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC---------CCcccceeEEEEecCCcEEEee
Confidence 3445667899988888531 3789999988632 2221 1233344577899999999999
Q ss_pred eCC-CcEEEeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCC---CCeEEEeeC
Q 000080 2290 ALD-GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN---GINVVVWDT 2351 (2389)
Q Consensus 2290 S~D-gTVkLWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~---D~TVrLWD~ 2351 (2389)
+.+ .++.+||..+..- ...-.+. ....--.++..+ ||++++.+|.... -+++.+||+
T Consensus 94 g~~~~~~~~yd~~~~~w---~~~~~~~-~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~ 154 (387)
T d1k3ia3 94 GNDAKKTSLYDSSSDSW---IPGPDMQ-VARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 154 (387)
T ss_dssp SSSTTCEEEEEGGGTEE---EECCCCS-SCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred cCCCcceeEecCccCcc---ccccccc-ccccccceeeec-CCceeeeccccccccccceeeeecC
Confidence 766 6999999987520 1111111 112223567777 9999998763211 146899996
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.60 E-value=3.9 Score=44.80 Aligned_cols=144 Identities=10% Similarity=-0.024 Sum_probs=86.5
Q ss_pred eEEEEEEcCCCCeEEEEeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC----CcEE
Q 000080 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVC 2296 (2389)
Q Consensus 2221 ~VrsVAFsPdG~~LASGS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D----gTVk 2296 (2389)
.+.++++.++|.++++ +.+ -|.++|..+|+...-.. .+.. .....++.+.+.|+|+..++...+ +.-.
T Consensus 60 ~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~-~~~~-----~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~ 131 (295)
T d2ghsa1 60 MGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAE-LESD-----LPGNRSNDGRMHPSGALWIGTMGRKAETGAGS 131 (295)
T ss_dssp CEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEEC-SSTT-----CTTEEEEEEEECTTSCEEEEEEETTCCTTCEE
T ss_pred CcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEee-eecC-----CCcccceeeEECCCCCEEEEecccccccccee
Confidence 3477899999988875 455 49999998887543322 1111 123568999999999977776533 3446
Q ss_pred EeeCCCCCccCcccceeeeecCCCeeEEEEecCCCCEEEEeecCCCCCeEEEeeCCCCCCCc---eE---EEEeecCcEE
Q 000080 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RA---SITCHEGLYD 2370 (2389)
Q Consensus 2297 LWDl~tggrs~~k~l~tl~gHs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD~l~~tg~~---v~---sL~GH~~~V~ 2370 (2389)
+|.+..+. . ..+...-...+.++|++ +++.+.-+. +..+.|..+|+....+.. .. .+.+-.+...
T Consensus 132 l~~~~~g~-----~-~~~~~~~~~~Ng~~~s~-d~~~l~~~d--t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pd 202 (295)
T d2ghsa1 132 IYHVAKGK-----V-TKLFADISIPNSICFSP-DGTTGYFVD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMD 202 (295)
T ss_dssp EEEEETTE-----E-EEEEEEESSEEEEEECT-TSCEEEEEE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEE
T ss_pred EeeecCCc-----E-EEEeeccCCcceeeecC-CCceEEEee--cccceeeEeeecccccccccceEEEeccCccccccc
Confidence 77666541 1 12222224567899999 777554443 577888888863221111 11 1222334455
Q ss_pred EEeecccchhh
Q 000080 2371 LFLPLKLLNFA 2381 (2389)
Q Consensus 2371 svA~~~~~~~~ 2381 (2389)
.++..++||.-
T Consensus 203 G~~vD~~GnlW 213 (295)
T d2ghsa1 203 GSVCDAEGHIW 213 (295)
T ss_dssp EEEECTTSCEE
T ss_pred ceEEcCCCCEE
Confidence 66777777643
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.00 E-value=1.5 Score=50.52 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=70.9
Q ss_pred eeEEEEEEcCCCCeEEE-----EeCCCcEEEeecCCCceeeEecccCCCCCCCCCCCCCEEEEEECCCCCEEEEEeCC--
Q 000080 2220 ISTRAFSSHPLRPFFLV-----GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-- 2292 (2389)
Q Consensus 2220 i~VrsVAFsPdG~~LAS-----GS~DgTIRLWDl~tGk~l~Tl~vl~gh~~p~~GH~~~V~sVaFSPDG~~LASgS~D-- 2292 (2389)
..+..++++|||+++|- |++-.+||+.|+.+|+.+..- ++. .....++|++||+.|.-...|
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~--i~~---------~~~~~~~W~~D~~~~~Y~~~~~~ 193 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--LER---------VKFSCMAWTHDGKGMFYNAYPQQ 193 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--EEE---------ECSCCEEECTTSSEEEEEECCCC
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc--ccc---------ccccceEEcCCCCEEEEEEeccc
Confidence 34456789999998772 445568999999999876431 111 112568899999988755433
Q ss_pred --------------CcEEEeeCCCCCccCcccceeeee--cCCCeeEEEEecCCCCEEEEeecCCCCCeEEEee
Q 000080 2293 --------------GTVCTWQLEVGGRSNVRPMESCLC--FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2389)
Q Consensus 2293 --------------gTVkLWDl~tggrs~~k~l~tl~g--Hs~~V~sVAFSP~DGslLASAG~sS~D~TVrLWD 2350 (2389)
..|.+|.+.+.. + ....-+.. ....+..+..+. ||++|........+.+.++|-
T Consensus 194 ~~~~~~~~~~~~~~~~v~~h~lgt~~-~--~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~ 263 (430)
T d1qfma1 194 DGKSDGTETSTNLHQKLYYHVLGTDQ-S--EDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWY 263 (430)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCG-G--GCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEE
T ss_pred cCcccccccccCCcceEEEEECCCCc-c--ccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEE
Confidence 258888888752 1 22222222 223455677787 888875322123445556664
|