Citrus Sinensis ID: 000085
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2342 | 2.2.26 [Sep-21-2011] | |||||||
| Q54U63 | 2491 | BEACH domain-containing p | yes | no | 0.340 | 0.319 | 0.353 | 1e-147 | |
| Q6ZNJ1 | 2754 | Neurobeachin-like protein | yes | no | 0.326 | 0.277 | 0.344 | 1e-141 | |
| Q6ZQA0 | 2742 | Neurobeachin-like protein | yes | no | 0.307 | 0.262 | 0.360 | 1e-139 | |
| E7FAW3 | 2801 | Neurobeachin-like protein | no | no | 0.282 | 0.235 | 0.381 | 1e-137 | |
| Q6ZS30 | 2694 | Neurobeachin-like protein | no | no | 0.353 | 0.307 | 0.326 | 1e-134 | |
| P50851 | 2863 | Lipopolysaccharide-respon | no | no | 0.334 | 0.273 | 0.341 | 1e-132 | |
| Q9ESE1 | 2856 | Lipopolysaccharide-respon | no | no | 0.345 | 0.282 | 0.334 | 1e-130 | |
| Q8NFP9 | 2946 | Neurobeachin OS=Homo sapi | no | no | 0.336 | 0.267 | 0.329 | 1e-129 | |
| Q9EPN1 | 2936 | Neurobeachin OS=Mus muscu | no | no | 0.336 | 0.268 | 0.330 | 1e-129 | |
| Q9W4E2 | 3578 | Neurobeachin OS=Drosophil | yes | no | 0.292 | 0.191 | 0.357 | 1e-127 |
| >sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2 | Back alignment and function desciption |
|---|
Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust.
Identities = 324/916 (35%), Positives = 483/916 (52%), Gaps = 119/916 (12%)
Query: 1309 WRKLIHCLIEMKCLFGPFEDHLSDPRRIFWKLDFMESSSRMRRCLRRNYMGSDHFGAAAN 1368
WRK++ L + +G E + WKLD E+SSRMR L+RNY +H A N
Sbjct: 1564 WRKILRSLTNERGPWGTTES------IVHWKLDKTENSSRMRIKLKRNYKFDEHLNCAIN 1617
Query: 1369 YEDQIERKPGQENVINPSNAPIVAAEAISMEAVN----EDDEQTENDNLDDRVYNLDNVG 1424
+ +I+ N N +++ E +S E+ N + +E+ + D V
Sbjct: 1618 -DSEIQDDHNNSNSNNNNDSNNSDGEHLS-ESANLLSIKPNEKQQQQQQSDEV------D 1669
Query: 1425 EDQTTVSEKIEQTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMV 1484
D T V + I+ + + DS L+ + E++++ +
Sbjct: 1670 SDWTMVPKDIDS--EENIDS----------LIQQQQQQQHQQQKEK--EKLIYSTSCHWI 1715
Query: 1485 RPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQE-------------KDRSWLMSS 1531
P +G ++TT + F + P T+ K + W
Sbjct: 1716 TPSSCKKGKLEITTFNLIFTEEEELPPPSTTTTNTTNTTNTNSTTNDSTFLKIKRWPNEM 1775
Query: 1532 LHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPHLNDIYLATQR 1591
+ ++ RRYLLR SA+E+FM D++N+ F+F E R Y I + + T
Sbjct: 1776 IKDVHLRRYLLRGSAIEIFMRDKTNYLFNFKKNE-RNKVYNKINSVKREFSKE---PTLS 1831
Query: 1592 PEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLA 1651
P +LK+ W ISNF+YLM LNT+AGR+YND+TQYPVFPW+++DY+S LDL
Sbjct: 1832 PSDMLKKA--TSEWQARRISNFDYLMTLNTIAGRTYNDLTQYPVFPWVIADYTSPVLDLN 1889
Query: 1652 NPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPF 1711
++RDLSKP+GALN +L+ F++RY SFDDPVIPKF+YGSHYSSAG VL+YL R+EPF
Sbjct: 1890 KAETFRDLSKPIGALNEKRLEIFKDRYESFDDPVIPKFYYGSHYSSAGIVLFYLIRLEPF 1949
Query: 1712 TTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGT 1771
TT + LQGG+FDH DRMF IA W+ L +DVKEL+PE +Y+PE LTN N I+FG
Sbjct: 1950 TTQFLNLQGGRFDHPDRMFDSIALAWDNSLTSSTDVKELIPEFYYMPEFLTNHNHINFGI 2009
Query: 1772 TQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISAN 1831
Q G ++ V LPPWA +P DFI +R ALESDYVS+HLHEW+DLIFG KQRGK+A
Sbjct: 2010 KQNGIGIEDVLLPPWASSPSDFIRINREALESDYVSSHLHEWIDLIFGIKQRGKQAKEVF 2069
Query: 1832 NVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVP-HMKKMPLGDVIHLQT 1890
NVF+Y+TYEG+VDID I D +RA + QI FGQTP+QL + H+++ PL + H+
Sbjct: 2070 NVFYYLTYEGSVDIDSIEDETTRRATESQINNFGQTPTQLFSKKHHIQRDPLNES-HISI 2128
Query: 1891 IFRNPKEVKPYAVPVPERCNLPAAAI--------HASSDTVVIVDMNAPAAHIARHNWQP 1942
+ P +++ Y + + + + I + +D V ++D + + H W P
Sbjct: 2129 LKTPPNQLQAYFLKITNKNPIVYVYIPEPNPIMSYLVADKVTVIDKSRTTTN---HKWFP 2185
Query: 1943 NTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVV 2002
+TP+ + +PF F+ P+S T R+ L FA+ S
Sbjct: 2186 STPNDKISPFTFE-----LDPSSTTKRRI----------------GLPFANDVTISPNCF 2224
Query: 2003 SITHD-KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
+IT D + +I+ H D S KL D AK +++ H VTCL+L+SD L+TGS+DTT
Sbjct: 2225 AITSDGRYVISCAHWDNSFKLSFVDSAKLIQSVVKHKDTVTCLSLASDGQTLITGSKDTT 2284
Query: 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHR 2121
+++WRI A T+++G P + P H+L GH
Sbjct: 2285 VMVWRI--ATTNKSGA--PKFN--------------------------DVPDHILYGHDD 2314
Query: 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSL---SSEGVIMTWN 2178
EI C V+ L + +S S ++H+++ G +R + +SL S++G I+ ++
Sbjct: 2315 EITCVDVNVGLDISISGSKDGTCIIHNLKHGEYVRSIYLPRQSPISLIAISNQGYIVIYS 2374
Query: 2179 KLQHTLSSFTLNGVLV 2194
+ + +++NG L+
Sbjct: 2375 QADLMIYLYSINGGLL 2390
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Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust.
Identities = 325/944 (34%), Positives = 485/944 (51%), Gaps = 180/944 (19%)
Query: 1338 WKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAIS 1397
WKL E+ SRMR L N+ H A+A + N P+ E S
Sbjct: 1827 WKLSSAETYSRMRLKLVPNHHFDPHLEASALRD-------------NLGEVPLTPTEEAS 1873
Query: 1398 ME-AVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIEQTLQASADSSDIPPARDQDLV 1456
+ AV ++ + + L D +GED+ ++E ++A+
Sbjct: 1874 LPLAVTKEAKVSTPPELLQE----DQLGEDELA---ELETPMEAA--------------- 1911
Query: 1457 SSSTAVLPGYVPSELDE---RIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEE 1513
ELDE ++V +V + V+ G +VTT+ + F +TE E
Sbjct: 1912 -------------ELDEQREKLVLSAECQLVTVVAVVPGLLEVTTQNVYFYDGSTERVE- 1957
Query: 1514 GTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGS---------- 1563
T E + R ++ L +++ RR+ LRRSALELF +D++N+F +F
Sbjct: 1958 -TEEGIGYDFRRP--LAQLREVHLRRFNLRRSALELFFIDQANYFLNFPCKVGTTPVSSP 2014
Query: 1564 --------------TEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWE 1609
T+ R Y +++ RPP + YL+++ P+++L+ + L ++W + E
Sbjct: 2015 SQTPRPQPGPIPPHTQVRNQVYSWLLRLRPP--SQGYLSSRSPQEMLRASGLTQKWVQRE 2072
Query: 1610 ISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPD 1669
ISNFEYLMQLNT+AGR+YND++QYPVFPW+L DY S LDL+NP+ +RDLSKP+G +NP
Sbjct: 2073 ISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPK 2132
Query: 1670 QLKKFQERYSSFDDP--VIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHAD 1727
+ +E+Y SF+DP I KFHYG+HYS+A V++YL RVEPFT+L +QLQ G+FD +D
Sbjct: 2133 HAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSD 2192
Query: 1728 RMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGG-KLDSVGLPPW 1786
R F +AA W LE +DVKEL+PE FY P+ L N+N D G QL K+ V LPPW
Sbjct: 2193 RQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPW 2252
Query: 1787 AENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDID 1846
A +P DFI +HR ALES+YVSAHLHEW+DLIFGYKQRG A A NVF+Y TYEG VD+D
Sbjct: 2253 ASSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLD 2312
Query: 1847 KISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHL--------QTIFRNPKEV 1898
++D +++A + I+ FGQTP QLL PH ++ + H +IF++ E+
Sbjct: 2313 HVTDERERKALEGIISNFGQTPCQLLKEPHPTRLSAEEAAHRLARLDTNSPSIFQHLDEL 2372
Query: 1899 KPY-------AVP-----VPERCNLPAAAI-HASSDTVVIVDMNAPAAHIARHNWQPNTP 1945
K + VP VP R P + I S D +V V + + H+W P
Sbjct: 2373 KAFFAEVVSDGVPLVLALVPHR--QPHSFITQGSPDLLVTVSAS---GLLGTHSWLPYDR 2427
Query: 1946 DGQGTPFLFQHGKASASPASGTF--LRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVS 2003
+ + + S P G+ R+ GP G SG+ A+
Sbjct: 2428 N------ISNYFSFSKDPTMGSHKTQRLLSGPWVPG--------------SGVSGQALAV 2467
Query: 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTIL 2063
K + +GGH DGS+++ K L S H VTCLAL + +L++GS+DTT +
Sbjct: 2468 APDGKLLFSGGHWDGSLRVTALPRGKLLSQLSCHLDVVTCLALDTCGIYLISGSRDTTCM 2527
Query: 2064 LWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREI 2123
+WR+ + G S+G + P+ VL GH +
Sbjct: 2528 VWRL----------------LHQGGLSVGLAP---------------KPVQVLYGHGAAV 2556
Query: 2124 LCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDA------HAVSLSSEGVIMT- 2176
C +S++L + VS S+ +++H++RRG+ + L + A ++L SEG I+
Sbjct: 2557 SCVAISTELDMAVSGSEDGTVIIHTVRRGQFVAALRPLGATFPGPIFHLALGSEGQIVVQ 2616
Query: 2177 ---WNK----LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLD 2213
W + + ++L +++NG L RA LPL+ + ++ D
Sbjct: 2617 SSAWERPGAQVTYSLHLYSVNGKL--RASLPLAEQPTALTVTED 2658
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Probably involved in thrombopoiesis. Plays a role in the development or secretion of alpha-granules, that contain several growth factors important for platelet biogenesis. Homo sapiens (taxid: 9606) |
| >sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 306/848 (36%), Positives = 458/848 (54%), Gaps = 129/848 (15%)
Query: 1421 DNVGEDQTTVSEKIEQTLQASADSS-DIPPAR--DQDLVSSSTAVLPGYV-PSELDER-- 1474
DN+GE T +E+ L + ++ PP ++ L A L + +ELDE+
Sbjct: 1847 DNLGEAPMTPTEETSLPLAVTKEAKISAPPEELPEEQLGEEDLAALESLMEAAELDEKRE 1906
Query: 1475 -IVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLH 1533
+V +V + V+ G ++TT+ + F +TE E T E + R ++ L
Sbjct: 1907 KLVLSAECQLVTVVAVVPGLLEITTQHVYFYDGSTERVE--TEEGIGHDFRRP--LAQLR 1962
Query: 1534 QIYSRRYLLRRSALELFMVDRSNFFFDF------------------------GSTEGRRN 1569
+++ RR+ LRRSALELF +D+SN+F +F T+ R
Sbjct: 1963 EVHLRRFNLRRSALELFFIDQSNYFLNFPHKVAASSASSPCQAPRPQLYPIPSHTQLRNQ 2022
Query: 1570 AYRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYND 1629
Y +++ RPP YL+++ P ++L+ + L ++W + EISNFEYLMQLNT+AGR+YND
Sbjct: 2023 VYSLLLRLRPP--TQGYLSSRSPLEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYND 2080
Query: 1630 ITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDP--VIP 1687
++QYPVFPW+L DY S LDL+NP+ +RDLSKP+G +NP + +E+Y SF+DP I
Sbjct: 2081 LSQYPVFPWVLQDYVSPVLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTID 2140
Query: 1688 KFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDV 1747
KFHYG+HYS+A V++YL RVEPFT+L +QLQ G+FD +DR F +AA W LE +DV
Sbjct: 2141 KFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADV 2200
Query: 1748 KELVPELFYLPEILTNENSIDFGTTQLGG-KLDSVGLPPWAENPVDFIHKHRMALESDYV 1806
KEL+PE FY P+ L N+N D G QL K+ V LPPWA +P DFI KHR ALES+YV
Sbjct: 2201 KELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWAGSPEDFIQKHRQALESEYV 2260
Query: 1807 SAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQ 1866
S HLHEW+DLIFGYKQRG A A NVF+Y TYEG VD+D ++D +++A + I+ FGQ
Sbjct: 2261 STHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVADERERKALEGIISNFGQ 2320
Query: 1867 TPSQLLTVPHMKKMPLGD----VIHLQT----IFRNPKEVKPY-------AVP-----VP 1906
TP QLL PH ++ + + L T IF+N ++K + AVP VP
Sbjct: 2321 TPCQLLKEPHPPRLSAEEAANRLARLDTNSPSIFQNLNQLKAFFAEVVSEAVPLVLALVP 2380
Query: 1907 ERCNLPAAAIHASSDTVVIVDMNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASG 1966
R + + +SSD +V V + + H W P + F F SP
Sbjct: 2381 HRQSH-SFITQSSSDMLVTVSA---SGLLGTHTWLPYDRNINNY-FTFSKDPTMGSP--- 2432
Query: 1967 TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSD 2026
++ GP W + SG+ + A+ K + +GGH DGS+++ +
Sbjct: 2433 KVQKLLSGP-------W-------VSDSGVSAQALAVAPDGKLLFSGGHWDGSLRVTSLP 2478
Query: 2027 GAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGT 2086
+ L S H VTCLAL + +L++GS+DTT ++WR+ ++G S+G+
Sbjct: 2479 RGRLLNQLSRHLDIVTCLALDTCGIYLISGSRDTTCMVWRL----LQQSGL---SAGLAP 2531
Query: 2087 PGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146
P+ VL GH + C +S++L + VS S+ +++
Sbjct: 2532 ------------------------KPVQVLYGHVAAVSCVAISTELDMAVSGSEDGTVII 2567
Query: 2147 HSIRRGRLI-------RRLVGVDAHAVSLSSEGVIMTWN--------KLQHTLSSFTLNG 2191
H++RRG+ + L G +H ++L +EG I+ + ++ ++L +++NG
Sbjct: 2568 HTVRRGQFVAALRPPGATLPGPISH-LALGAEGQIVVQSSACERPGAQVTYSLHLYSVNG 2626
Query: 2192 VLVARAKL 2199
L A L
Sbjct: 2627 RLRASVTL 2634
|
Probably involved in thrombopoiesis. Plays a role in the development or secretion of alpha-granules, that contain several growth factors important for platelet biogenesis. Mus musculus (taxid: 10090) |
| >sp|E7FAW3|NBEL2_DANRE Neurobeachin-like protein 2 OS=Danio rerio GN=nbeal2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust.
Identities = 293/769 (38%), Positives = 421/769 (54%), Gaps = 108/769 (14%)
Query: 1473 ERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEK----DRSWL 1528
E++V ++ + V+ G +VTT + F +G+SE E+ D
Sbjct: 1989 EKLVLSEDCELITIVAVVPGRLEVTTHHLYFY--------DGSSEKEETEEGIGFDFKRP 2040
Query: 1529 MSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRN-AYRAIVQARPPHLNDIYL 1587
+S L +++ RRY LRRSALELF +D+S++F +F +G RN Y I+ RPP+L Y
Sbjct: 2041 LSQLREVHLRRYNLRRSALELFFIDQSHYFINF--RKGVRNKVYSRILGLRPPNL--FYF 2096
Query: 1588 ATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSEN 1647
++ P++LLK + L RW EISNFEYLMQLNT+AGR+YND++QYPVFPW+L DY+S
Sbjct: 2097 GSRSPQELLKASNLTHRWVCREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLCDYTSAE 2156
Query: 1648 LDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPV--IPKFHYGSHYSSAGTVLYYL 1705
LDL +P+ +RDLSKP+G +NP + +E+Y SF+DP I KFHYG+HYS+A V++Y+
Sbjct: 2157 LDLDDPAVFRDLSKPIGVVNPRHAQNVREKYESFEDPTGTIDKFHYGTHYSNAAGVMHYM 2216
Query: 1706 FRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNEN 1765
R EPFT+L IQLQ GKFD ADR F IAA W +E +DVKEL+PE FY PE L N N
Sbjct: 2217 IRTEPFTSLHIQLQSGKFDCADRQFHSIAAAWQARMESPADVKELIPEFFYFPEFLENMN 2276
Query: 1766 SIDFGTTQLGG-KLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRG 1824
D G Q+ K+++V LPPWA + DFI KHR ALES++VSAHLHEW+DLIFGYKQRG
Sbjct: 2277 GFDLGCLQISQEKVNNVLLPPWASSREDFIRKHRKALESEHVSAHLHEWIDLIFGYKQRG 2336
Query: 1825 KEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGD 1884
EA+ A NVF+Y TYEG VD+D I++ +++A + I+ FGQTP QLL PH +M +
Sbjct: 2337 PEAVEALNVFYYCTYEGAVDLDAIANETERKALEGIISNFGQTPCQLLKEPHPPRMSAEN 2396
Query: 1885 V--------IHLQTIFRNPKEVKPYAVPVPERCNLPAAA---------IHASSDTVVIVD 1927
I +F +++ + V + L A I SD +V V
Sbjct: 2397 AFRRAARLDILPPNLFDQLSKLRSFKEVVSDGLALVQAVVPRNQTRSFIIPGSDILVTVS 2456
Query: 1928 MNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPR 1987
N I H+W P + F F + ++P + FL GP G +
Sbjct: 2457 AN---GMIGTHSWLPYDKNIANY-FTFTRDPSVSNPKTQRFL---SGPFSPGVE------ 2503
Query: 1988 ALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS 2047
+ S +V + + + +GGH D S+++ AK + H VTCLAL
Sbjct: 2504 --------MGSQVLVVSSDGRLLFSGGHWDCSLRVTMLGKAKLVGRICRHIDVVTCLALD 2555
Query: 2048 SDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR 2107
+L++GS+DTT ++W++ + G S G S
Sbjct: 2556 LCGIYLISGSRDTTCMVWQV----------------LQQGGFSSGLSP------------ 2587
Query: 2108 RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL--------- 2158
PI VL GH +E+ C +S++L + +S S +++HS+RRG+ + L
Sbjct: 2588 ---RPIQVLCGHDQEVTCVAISTELDMAISGSKDGTVIVHSVRRGQYLWTLRPPCENCVS 2644
Query: 2159 -------VGVDAHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKL 2199
VG++ H V + EG + K ++ L +++NG L+A L
Sbjct: 2645 APVAQLEVGMEGHIVMQTVLEG--RSAGKERYALHVYSVNGTLLASETL 2691
|
Involved in thrombopoiesis. Plays a role in the development or secretion of alpha-granules, that contain several growth factors important for platelet biogenesis. Danio rerio (taxid: 7955) |
| >sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 480 bits (1236), Expect = e-134, Method: Compositional matrix adjust.
Identities = 325/996 (32%), Positives = 510/996 (51%), Gaps = 167/996 (16%)
Query: 1239 EAMGVAWMECLQPVDTKSVYGKDFNA--LSYKFIAVLVASFALARNMQRSEIDRRSQVDL 1296
E M + W +C + + +++ +D KF + V F R ++ + + +
Sbjct: 1707 ENMALYWKDCYEALMV-NMHKRDREGGESKLKFQELFVEPFN--RKARQENLRYNNMLKQ 1763
Query: 1297 ISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFWKLDFMESSSRMRRCLRRN 1356
+S + T +R W+ + + + C GP+ +P I WKL +E+ SRMR L N
Sbjct: 1764 LSSQQLAT-LRRWKAI---QLYLTCERGPWAKRKQNP--IHWKLANVENYSRMRLKLVPN 1817
Query: 1357 YMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAISMEAVNEDDEQTENDNLDDR 1416
Y N++ E ++N+ + P +++ + +E V + +D ++D+
Sbjct: 1818 Y----------NFKTHEEASALRDNLGIQHSQP--SSDTLLLEVVKQ---VKVSDMVEDK 1862
Query: 1417 VYNLDNVGEDQT---TVSEKIEQTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDE 1473
LD ED T V EK EQ DQ E
Sbjct: 1863 ---LDLPEEDITARVNVDEKEEQ---------------DQK------------------E 1886
Query: 1474 RIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLH 1533
++V ++ + VI G ++TT+ I F D + E+G D W S +
Sbjct: 1887 KLVLMEDCELITIIDVIPGRLEITTQHIYF-YDGSIEKEDGVG------FDFKWPHSQIR 1939
Query: 1534 QIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPHLNDIYLATQRPE 1593
+I+ RRY LRRSALE+F VD+SN+F +F E R Y ++ P + Y ++ P+
Sbjct: 1940 EIHLRRYNLRRSALEIFHVDQSNYFLNF-KKEVRNKIYSRLLSLHSP---NSYYGSRSPQ 1995
Query: 1594 QLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANP 1653
+L K + L ++W EISNF+YL+Q+NT+AGR+YND+ QYPVFPWIL DY+SE LDL NP
Sbjct: 1996 ELFKASGLTQKWVNREISNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNP 2055
Query: 1654 SSYRDLSKPVGALNPDQLKKFQERYSSFDDPV--IPKFHYGSHYSSAGTVLYYLFRVEPF 1711
+ +RDLSKP+G +N K +E+Y +F+DP+ I KFHYG+HYS++ V++YL RVEPF
Sbjct: 2056 AVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPF 2115
Query: 1712 TTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGT 1771
TTL IQLQ G+FD ADR F I ATW ++++ DVKEL+PE FY PE L N+N + G
Sbjct: 2116 TTLHIQLQSGRFDCADRQFHSIPATWQALMDNPYDVKELIPEFFYFPEFLENQNQFNLGR 2175
Query: 1772 TQLGGKL-DSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISA 1830
Q+ +L + V LP WA++ DFI+KHR ALES+YVSAHLHEW+DLIFGYKQRG A+ A
Sbjct: 2176 LQISKELVNDVILPKWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEA 2235
Query: 1831 NNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQT 1890
NVF+Y +YEG VD+D ++D +++A + I FGQTP QLL PH ++ + + T
Sbjct: 2236 LNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEAVQKPT 2295
Query: 1891 --------IFRNPKEVKPYAVP-VPERCNLPAAAI----------HASSDTVVIVDMNAP 1931
+F++ E+K + + + + L A I S + ++ + MN
Sbjct: 2296 KIDTSTLNLFQHLPELKSFFIEGISDGIPLLKATIPKNQYRSFMSQGSPELLITISMNYV 2355
Query: 1932 AAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAF 1991
I H W P + F F + +P + R G +F
Sbjct: 2356 ---IGTHGWLPYDRNISNY-FTFIKDQTVTNPKTQ---RSING---------------SF 2393
Query: 1992 ASSGIRSSAVVSITHD-KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS 2050
A +S + ++HD K + + G+ D SI++++ K + H VTCLA
Sbjct: 2394 APGLEITSKLFVVSHDAKLLFSAGYWDNSIQVMSLTKGKIISHIIRHMDIVTCLATDYCG 2453
Query: 2051 NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110
L++GS+DTT ++W+I ++ G G P +G ++
Sbjct: 2454 IHLISGSRDTTCMIWQI-----TQQG--------GVP---VGLASK-------------- 2483
Query: 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL-------VGVDA 2163
P +L GH E+L +S++L + VS S +++H+I++G+ +R L + +
Sbjct: 2484 -PFQILYGHTNEVLSVGISTELDMAVSGSRDGTVIIHTIQKGQYMRTLRPPCESSLFLTI 2542
Query: 2164 HAVSLSSEGVIMTWN--------KLQHTLSSFTLNG 2191
+++S EG I+ ++ K ++ L F++NG
Sbjct: 2543 PNLAISWEGHIVVYSSTEEKTTLKDKNALHLFSING 2578
|
Homo sapiens (taxid: 9606) |
| >sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4 | Back alignment and function description |
|---|
Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust.
Identities = 314/919 (34%), Positives = 456/919 (49%), Gaps = 135/919 (14%)
Query: 1337 FWKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAI 1396
FW+LD+ E R RR RN +GS H P A E +
Sbjct: 1979 FWRLDYWEDDLRRRRRFVRNPLGSTH----------------------PEATLKTAVEHV 2016
Query: 1397 SMEAVNEDDEQTENDNLDD-----RVYNLDNVGEDQTTVSEKIEQTLQASADSSDIPPAR 1451
+ + E+ + T+ D L R L N + + E + TL +S D D+
Sbjct: 2017 CIFKLRENSKATDEDILAKGKQSIRSQALGNQNSENEILLEGDDDTL-SSVDEKDL---- 2071
Query: 1452 DQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESP 1511
L + P+ +V P V++GT VT+ + F VD E P
Sbjct: 2072 -----------------ENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDE-EDP 2113
Query: 1512 EEGTSELR----NQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGR 1567
+ + + WL + + I+SRRYLL+ +ALE+FM +R F+F
Sbjct: 2114 NFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPA-- 2171
Query: 1568 RNAYRAIVQARP----------PHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLM 1617
+ +V P P I LA+ P QL K + + +RW EISNFEYLM
Sbjct: 2172 --TVKKVVNYLPRVGVGTSFGLPQTRRISLAS--PRQLFKASNMTQRWQHREISNFEYLM 2227
Query: 1618 QLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQER 1677
LNT+AGRSYND+ QYPVFPW++++Y SE LDL P+++RDLSKP+GALNP + F ER
Sbjct: 2228 FLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAER 2287
Query: 1678 YSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATW 1737
Y S++D +PKFHYG+HYS+A VL +L R+EPFTT + LQGGKFDHADR FS I+ W
Sbjct: 2288 YESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAW 2347
Query: 1738 NGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKH 1797
D SD+KEL+PE +YLPE+ N N+ + G G + V LPPWA+ +F+H +
Sbjct: 2348 RNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHIN 2407
Query: 1798 RMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAA 1857
R+ALES++VS LH+W+DLIFGYKQ+G EA+ A NVF+Y+TYEG V+++ I+DPV + A
Sbjct: 2408 RLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAV 2467
Query: 1858 QDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAAAIH 1917
+ QI FGQTPSQLL PH P G + + + K + + + N P +
Sbjct: 2468 EAQIRSFGQTPSQLLIEPH---PPRGSAMQVSPLMFTDKAQQDVIMVLKFPSNSPVTHVA 2524
Query: 1918 ASSD------TVVIVDMNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRM 1971
A++ V+ V N A HN + Q P+ P + M
Sbjct: 2525 ANTQPGLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQL---PVEIDPLIASNTGM 2581
Query: 1972 FKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031
+ D+ S + S V + ++ I+ G D S ++ ++D + +
Sbjct: 2582 HRRQITDLLDQ----------SIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGRLI 2631
Query: 2032 ETASGHCAPVTCLALSSD----SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087
+ GH VTCLA S + ++++GS+D T+LLW + SG+
Sbjct: 2632 QVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGK----------CSGI--- 2678
Query: 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147
G++ GS T A P +L GH E+ C V ++LG+V+S S L+H
Sbjct: 2679 GDNPGSETAA--------------PRAILTGHDYEVTCAAVCAELGLVLSGSQEGPCLIH 2724
Query: 2148 SIRRGRLIRRLVG----VDAHAVSLSSEG--VIMTWNKLQHTLSSFTLNGVLVARAKLPL 2201
S+ G L+R L G + + S EG VI N L +F++NG L +A +
Sbjct: 2725 SM-NGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGL---FCTFSVNGKL--QATMET 2778
Query: 2202 SGSIGCMEISLDGHSALIG 2220
+I +++S DG L G
Sbjct: 2779 DDNIRAIQLSRDGQYLLTG 2797
|
May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules. Homo sapiens (taxid: 9606) |
| >sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus GN=Lrba PE=1 SV=1 | Back alignment and function description |
|---|
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 317/947 (33%), Positives = 469/947 (49%), Gaps = 139/947 (14%)
Query: 1304 TGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFWKLDFMESSSRMRRCLRRNYMGSDHF 1363
T + +K+I+ L + +G +S PR FW+LD+ E R RR RN +GS H
Sbjct: 1953 TATQLIQKIINLLTDKHGAWG--SSAVSRPRE-FWRLDYWEDDLRRRRRFVRNPLGSTH- 2008
Query: 1364 GAAANYEDQIERKPGQENVINPSNAPIVAAEAISMEAVNEDDEQTENDNLDDRVYNLDNV 1423
A + +E ++ I+A S+++ ++ +EN+ L +
Sbjct: 2009 -PEATLKTAVEHAADED---------ILAKGKQSIKSQALGNQNSENEALLE-------- 2050
Query: 1424 GEDQTTVSEKIEQTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSM 1483
G+D T +S D D+ L + P+ +
Sbjct: 2051 GDDDTL----------SSVDEKDL---------------------ENLAGPVSLSTPAQL 2079
Query: 1484 VRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELR----NQEKDRSWLMSSLHQIYSRR 1539
V P V++GT VT+ + F VD E P + + + WL + + I+SRR
Sbjct: 2080 VAPSVVVKGTLSVTSSELYFEVDE-EDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRR 2138
Query: 1540 YLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARP----------PHLNDIYLAT 1589
YLL+ +ALE+FM +R F+F + +V P P I LAT
Sbjct: 2139 YLLQNTALEIFMANRVAVMFNFPDPA----TVKKVVNYLPRVGVGTSFGLPQTRRISLAT 2194
Query: 1590 QRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLD 1649
P QL K + + +RW EISNFEYLM LNT+AGRSYND+ QYPVFPW++++Y SE LD
Sbjct: 2195 --PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2252
Query: 1650 LANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVE 1709
L PS++RDLSKP+GALNP + F ER+ S++D +PKFHYG+HYS+A VL +L R+E
Sbjct: 2253 LTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2312
Query: 1710 PFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDF 1769
PFTT + LQGGKFDHADR FS ++ W D SD+KEL+PE +YLPE+ N N+ +
Sbjct: 2313 PFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2372
Query: 1770 GTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAIS 1829
G G + V LPPWA+ +F+ +R+ALES++VS LH+W+DLIFGYKQ+G EA+
Sbjct: 2373 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2432
Query: 1830 ANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQ 1889
A NVF+Y+TYEG V+++ I+DPV + A + QI FGQTPSQLL PH P G +
Sbjct: 2433 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPH---PPRGSAMQAS 2489
Query: 1890 TIFRNPKEVKPYAVPVPERCNLPAAAIHASSD------TVVIVDMNAPAAHIARHNWQPN 1943
+ + + + + N P + A++ V+ V N A HN +
Sbjct: 2490 PLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWHNLPAH 2549
Query: 1944 TPDGQGTPF-LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVV 2002
Q P+ L + +GT R L S + S V
Sbjct: 2550 QGAVQDQPYQLPVEIDPLIACGTGTHRRQVTD--------------LLDQSIQVHSQCFV 2595
Query: 2003 SITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD----SNFLVTGSQ 2058
+ ++ I+ G D S ++ ++D K ++ GH VTCLA S + ++++GS+
Sbjct: 2596 ITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILSGSR 2655
Query: 2059 DTTILLWRIHRAFTSRTGTIEPSSGMG-TPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117
D T+LLW + SSG+G PG + P +L
Sbjct: 2656 DATLLLWYWNGK----------SSGIGDNPGGETAT------------------PRAILT 2687
Query: 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG----VDAHAVSLSSEGV 2173
GH EI C V ++LG+V+S S L+HS+ G L+R L G + + S EG
Sbjct: 2688 GHDYEITCAAVCAELGLVLSGSQEGPCLIHSM-NGDLLRTLEGPENCLKPKLIQASREGH 2746
Query: 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220
+ + + +F++NG L +A + I +++S DG L G
Sbjct: 2747 CVIFYE-NGCFCTFSVNGKL--QATVETDDHIRAIQLSRDGQYLLTG 2790
|
May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules. Mus musculus (taxid: 10090) |
| >sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust.
Identities = 324/982 (32%), Positives = 474/982 (48%), Gaps = 195/982 (19%)
Query: 1337 FWKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAI 1396
FW+LD+ E R RR RN GS H AEA+
Sbjct: 2065 FWRLDYWEDDLRRRRRFVRNAFGSTH------------------------------AEAL 2094
Query: 1397 SMEAVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIEQTLQASADSSDIPPARDQDLV 1456
A+ + TE D + + Q V++ E L D + +++++
Sbjct: 2095 LKAAI---EYGTEEDVVKSK-----KTFRSQAIVNQNAETELMLEGDDDAVSLLQEKEI- 2145
Query: 1457 SSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEG-- 1514
L +V P+ ++ P+ V +GT +TT I F VD +S +
Sbjct: 2146 ------------DNLAGPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKID 2193
Query: 1515 TSELRNQEK-DRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRA 1573
T L E W+ S + ++SRRYLL+ +ALE+FM +R++ F+F + +
Sbjct: 2194 TKVLAYTEGLHGKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPD----QATVKK 2249
Query: 1574 IVQARP----------PHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLA 1623
+V + P P I LAT P QL K + + +RW R EISNFEYLM LNT+A
Sbjct: 2250 VVYSLPRVGVGTSYGLPQARRISLAT--PRQLYKSSNMTQRWQRREISNFEYLMFLNTIA 2307
Query: 1624 GRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDD 1683
GR+YND+ QYPVFPW+L++Y SE LDL P ++RDLSKP+GALNP + + ERY +++D
Sbjct: 2308 GRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWED 2367
Query: 1684 PVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLED 1743
P +HY +HYS+A + L +L R+EPFTT + GKFDH DR FS +A +W D
Sbjct: 2368 DQSPPYHYNTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRD 2427
Query: 1744 MSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALES 1803
SDVKEL+PE +YLPE+ N N + G + ++ V LPPWA+ P DF+ +RMALES
Sbjct: 2428 TSDVKELIPEFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALES 2487
Query: 1804 DYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAY 1863
++VS LH+W+DLIFGYKQRG EA+ A NVF Y+TYEG+V++D I+DPV + A + QI
Sbjct: 2488 EFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQN 2547
Query: 1864 FGQTPSQLLTVPHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAAAI----HAS 1919
FGQTPSQLL PH P +HL C LP + +
Sbjct: 2548 FGQTPSQLLIEPH---PPRSSAMHL--------------------CFLPQSPLMFKDQMQ 2584
Query: 1920 SDTVVIVDM--NAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFK---- 1973
D ++++ N+P H+A NT P + + T R+F
Sbjct: 2585 QDVIMVLKFPSNSPVTHVA-----ANTLPHLTIPAV----------VTVTCSRLFAVNRW 2629
Query: 1974 --------GPGGSGADEWHFP------------------RALAFASSGIRSSAVVSITHD 2007
PG S H P L S I + V +
Sbjct: 2630 HNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTADN 2689
Query: 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD----SNFLVTGSQDTTIL 2063
+ I+ G D S ++ +++ K + GH VTCLA S ++V+GS+D T+L
Sbjct: 2690 RYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLL 2749
Query: 2064 LWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREI 2123
LW ++ R I G NS S PA P VL GH E+
Sbjct: 2750 LWY----WSGRHHII------GDNPNS--SDYPA--------------PRAVLTGHDHEV 2783
Query: 2124 LCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----AHAVSLSSEGVIMTWNK 2179
+C V ++LG+V+S + L+H+I G L+R L G + +S+SSEG + + +
Sbjct: 2784 VCVSVCAELGLVISGAKEGPCLVHTI-TGDLLRALEGPENCLFPRLISVSSEGHCIIYYE 2842
Query: 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239
+ S+F++NG L+ A++ ++ S + +S DG + + G +NG + Q +
Sbjct: 2843 -RGRFSNFSINGKLL--AQMEINDSTRAILLSSDGQNLVTG-----GDNGVVEVWQACDF 2894
Query: 2240 KQ--------SGTEDFDLASDQ 2253
KQ +G DL+ DQ
Sbjct: 2895 KQLYIYPGCDAGIRAMDLSHDQ 2916
|
Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Homo sapiens (taxid: 9606) |
| >sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust.
Identities = 325/982 (33%), Positives = 473/982 (48%), Gaps = 195/982 (19%)
Query: 1337 FWKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAI 1396
FW+LD+ E R RR RN GS H AEA+
Sbjct: 2055 FWRLDYWEDDLRRRRRFVRNAFGSTH------------------------------AEAL 2084
Query: 1397 SMEAVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIEQTLQASADSSDIPPARDQDLV 1456
AV + TE D + + Q V++ E L D + +++++
Sbjct: 2085 LKSAV---EYGTEEDVVKSK-----KAFRSQAIVNQNSETELMLEGDDDAVSLLQEKEI- 2135
Query: 1457 SSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEG-- 1514
L +V P+ ++ P+ V +GT +TT I F VD ++ +
Sbjct: 2136 ------------DNLAGPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDAAFKKID 2183
Query: 1515 TSELRNQEK-DRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRA 1573
T L E W+ S + ++SRRYLL+ +ALE+FM +R++ F+F + +
Sbjct: 2184 TKVLAYTEGLHGKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPD----QATVKK 2239
Query: 1574 IVQARP----------PHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLA 1623
+V + P P I LAT P QL K + + +RW R EISNFEYLM LNT+A
Sbjct: 2240 VVYSLPRVGVGTSYGLPQARRISLAT--PRQLYKSSNMTQRWQRREISNFEYLMFLNTIA 2297
Query: 1624 GRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDD 1683
GR+YND+ QYPVFPW+L++Y SE LDL P ++RDLSKP+GALNP + + ERY ++++
Sbjct: 2298 GRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEE 2357
Query: 1684 PVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLED 1743
P FHY +HYS+A + L +L R+EPFTT + GKFDH DR FS IA +W D
Sbjct: 2358 DQSPPFHYNTHYSTATSALSWLVRIEPFTTFFLNANDGKFDHPDRTFSSIARSWRTSQRD 2417
Query: 1744 MSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALES 1803
SDVKEL+PE +YLPE+ N N G + ++ V LPPWA+ P DF+ +RMALES
Sbjct: 2418 TSDVKELIPEFYYLPEMFVNSNGYHLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALES 2477
Query: 1804 DYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAY 1863
++VS LH+W+DLIFGYKQRG EA+ A NVF Y+TYEG+V++D I+DPV + A + QI
Sbjct: 2478 EFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQN 2537
Query: 1864 FGQTPSQLLTVPHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAAAI----HAS 1919
FGQTPSQLL PH P +HL C LP + +
Sbjct: 2538 FGQTPSQLLIEPH---PPRSSAMHL--------------------CFLPQSPLMFKDQMQ 2574
Query: 1920 SDTVVIVDM--NAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFK---- 1973
D ++++ N+P H+A NT P + + T R+F
Sbjct: 2575 QDVIMVLKFPSNSPVTHVA-----ANTLPHLTIPAV----------VTVTCSRLFAVNRW 2619
Query: 1974 --------GPGGSGADEWHFP------------------RALAFASSGIRSSAVVSITHD 2007
PG S H P L S I + V +
Sbjct: 2620 HNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTADN 2679
Query: 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD----SNFLVTGSQDTTIL 2063
+ I+ G D S ++ +++ K + GH VTCLA S ++V+GS+D T+L
Sbjct: 2680 RYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLL 2739
Query: 2064 LWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREI 2123
LW ++ R I G NS S PA P VL GH E+
Sbjct: 2740 LWY----WSGRHHII------GDNPNS--SDYPA--------------PRAVLTGHDHEV 2773
Query: 2124 LCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----AHAVSLSSEGVIMTWNK 2179
+C V ++LG+V+S + L+H+I G L+R L G + +S+SSEG + + +
Sbjct: 2774 VCVSVCAELGLVISGAKEGPCLVHTI-TGDLLRALEGPENCLFPRLISVSSEGHCIIYYE 2832
Query: 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239
+ S+F++NG L+ A++ ++ S + +S DG + + G +NG + Q +
Sbjct: 2833 -RGRFSNFSINGKLL--AQMEINDSTRAILLSSDGQNLVTG-----GDNGVVEVWQACDF 2884
Query: 2240 KQ--------SGTEDFDLASDQ 2253
KQ +G DL+ DQ
Sbjct: 2885 KQLYIYPGCDAGIRAMDLSHDQ 2906
|
Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking. Mus musculus (taxid: 10090) |
| >sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3 | Back alignment and function description |
|---|
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 273/764 (35%), Positives = 417/764 (54%), Gaps = 80/764 (10%)
Query: 1483 MVRPLRVIRGTFQVTTRRINFIVDNTESPE----EGTSELRNQEKDRSWLMSSLHQIYSR 1538
++ P V GT +T+ + F VD E PE +G W S + I+SR
Sbjct: 2791 LIAPGLVAPGTVSITSTEMFFEVDE-EHPEFQKIDGEVLKYCDHLHGKWYFSEVRAIFSR 2849
Query: 1539 RYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAI------VQARPPHLNDIYLATQRP 1592
RYLL+ ALE+F+ R++ F F + +A+ ++ P + + P
Sbjct: 2850 RYLLQNVALEIFLASRTSILFAFPDQHTVKKVIKALPRVGVGIKYGIPQTRRASMMS--P 2907
Query: 1593 EQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLAN 1652
QL++ + + ++W R EISNFEYLM LNT+AGR+YND+ QYP+FPW+L++Y S++LDL+
Sbjct: 2908 RQLMRNSNMTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYESKDLDLSL 2967
Query: 1653 PSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFT 1712
PS+YRDLSKP+GALNP + F+ERY S+D IP FHYG+HYS+A L +L RVEPFT
Sbjct: 2968 PSNYRDLSKPIGALNPSRRAYFEERYESWDSDTIPPFHYGTHYSTAAFTLNWLVRVEPFT 3027
Query: 1713 TLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTT 1772
T+ + LQGGKFD+ DR+FS ++ +W D SDVKEL+PE ++LPE+ N + G
Sbjct: 3028 TMFLALQGGKFDYPDRLFSSVSLSWKNCQRDTSDVKELIPEWYFLPEMFYNSSGYRLGHR 3087
Query: 1773 QLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANN 1832
+ G +D + LPPWA++P +F+ +RMALES++VS LH+W+DLIFGYKQRG EAI A N
Sbjct: 3088 EDGALVDDIELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAIRATN 3147
Query: 1833 VFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQTIF 1892
VF+Y+TYEG+VD+D + DPV + A ++QI FGQTPSQLL PH P +HL +
Sbjct: 3148 VFYYLTYEGSVDLDGVLDPVMREAVENQIRNFGQTPSQLLMEPH---PPRSSAMHLSPMM 3204
Query: 1893 RNPKEVKPYAVPVPERCNL-----PAAAIHASSDTVVIVDMNAPAAHIARHN-----WQP 1942
+ A+P + C + + IH S++T + + + A H W
Sbjct: 3205 FS-------AMP-EDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNC 3256
Query: 1943 NTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASS---GIRSS 1999
N +P + ++ S T + G + R L S IRS+
Sbjct: 3257 NYTASVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSN 3316
Query: 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLA-----LSSDSNFLV 2054
V+ + +I G D S ++ ++ AK ++ GH VTC+A ++SD ++
Sbjct: 3317 CFVTTVDSRFLIACGFWDNSFRVFATETAKIVQIVFGHFGVVTCMARSECNITSDC-YIA 3375
Query: 2055 TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114
+GS D T+LLW + +RT +I + TP +
Sbjct: 3376 SGSADCTVLLWH----WNARTQSIVGEGDVPTPRAT------------------------ 3407
Query: 2115 VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL-VGVDAHA---VSLSS 2170
L GH + + +S++LG+VVS S + +L+H+ G L+R L + H+ +++S
Sbjct: 3408 -LTGHEQAVTSVVISAELGLVVSGSSNGPVLIHTT-FGDLLRSLDPPAEFHSPELITMSR 3465
Query: 2171 EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG 2214
EG I+ N + ++++T+NG + + ++ CM +S DG
Sbjct: 3466 EGFIVI-NYDKGNVAAYTINGKKLRHET--HNDNLQCMLLSRDG 3506
|
Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Required for correct retinal pattern formation and may function in cell fate determination through its interactions with the EGFR and Notch signaling pathways. Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2342 | ||||||
| 225453793 | 2997 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.772 | 0.791 | 0.0 | |
| 255541368 | 2920 | nucleotide binding protein, putative [Ri | 0.979 | 0.785 | 0.801 | 0.0 | |
| 449433113 | 3006 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.761 | 0.764 | 0.0 | |
| 356530129 | 2961 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.767 | 0.759 | 0.0 | |
| 357506993 | 3050 | Neurobeachin-like protein [Medicago trun | 0.964 | 0.740 | 0.712 | 0.0 | |
| 297828273 | 2941 | hypothetical protein ARALYDRAFT_483691 [ | 0.968 | 0.771 | 0.722 | 0.0 | |
| 15225507 | 2946 | beige-related and WD-40 repeat-containin | 0.967 | 0.768 | 0.721 | 0.0 | |
| 334184925 | 3001 | beige-related and WD-40 repeat-containin | 0.967 | 0.754 | 0.702 | 0.0 | |
| 449480357 | 2082 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.867 | 0.975 | 0.751 | 0.0 | |
| 297820942 | 2860 | hypothetical protein ARALYDRAFT_324535 [ | 0.959 | 0.785 | 0.685 | 0.0 |
| >gi|225453793|ref|XP_002270775.1| PREDICTED: uncharacterized protein LOC100247154 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3567 bits (9249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1843/2328 (79%), Positives = 2052/2328 (88%), Gaps = 14/2328 (0%)
Query: 24 SSGMVRRPAEVLGQVHVATRMRPAEALWALAYGGPMSLLTLTVGNVHKESLEPQPGNFPL 83
S+G++RRPAEVLGQVHVATRMRP EALWAL+YGGPMSLL L V NVHK++LEPQ G+ PL
Sbjct: 674 SAGILRRPAEVLGQVHVATRMRPTEALWALSYGGPMSLLPLAVCNVHKDTLEPQQGSPPL 733
Query: 84 SLATAALAAPIFRIISIAIQHPGNNEELIRTRGPEVLSRILNYLLKTLSSLGSGKHNGVG 143
S ATAALAAPIFRIIS+AIQHP NNEEL TRGPE+L+RIL+YLL+TLSSL GK GVG
Sbjct: 734 SAATAALAAPIFRIISVAIQHPRNNEELCCTRGPEILARILDYLLQTLSSLEIGKREGVG 793
Query: 144 DEELVAAVVSLCQSQKSNHALKVQLFSTLLLDLRIWSLCSYGLQKKLLSSLADMVFTESS 203
DEELVAA+VSLCQSQKSNH LKV+LFS LLLDL+IWSLC+YGLQKKLLSSLADMVFTES
Sbjct: 794 DEELVAAIVSLCQSQKSNHTLKVKLFSMLLLDLKIWSLCNYGLQKKLLSSLADMVFTESL 853
Query: 204 VMRDANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAMRPMGEVNALVDELLVIIELLIGA 263
VMRDANAIQMLLDGCRRCYWTIREKDSV+TFSLDEA RP+GEVNALVDELLV+IELL+ A
Sbjct: 854 VMRDANAIQMLLDGCRRCYWTIREKDSVSTFSLDEATRPVGEVNALVDELLVVIELLVLA 913
Query: 264 TPPSLAAEDVCRLLGFLVDCPQPNQVARVLHLIYRLVVQPNTARAQRFAETFLASGGIES 323
PSLA EDV RLL F+VDCPQPNQVARVLHLIYRLVVQPNT+RA FA+ F++SGGIE+
Sbjct: 914 AAPSLAVEDVRRLLRFMVDCPQPNQVARVLHLIYRLVVQPNTSRAHTFADAFISSGGIET 973
Query: 324 LLVLLQKEAKAGDHSVPVPVTKSDESPSVQGTEPDSESANLERSEDDIVGS--QKESDSQ 381
LLVLLQ+E KAGD SVP K+ ESP VQ +E DS E ++ D S +KE S
Sbjct: 974 LLVLLQREVKAGDRSVPESPIKNAESPPVQESELDSFCRVSEVNQGDNEASLEEKERVSY 1033
Query: 382 EKDSESQPFNTDRGPVAISNTEKIERTSSVSENPFVKDLGGISLSISADNARNNVYNIDK 441
E D E + + G + +S IER +S+SENPF+K+LGGIS SISADNARNNVYN+DK
Sbjct: 1034 EIDCEPESISIGGGKLFVSTGTHIERMASLSENPFLKNLGGISFSISADNARNNVYNVDK 1093
Query: 442 SDGIIVAIIELLGALISAGHLKVGSSTPSDVASNFPSIGLHERGGTMFDDKVSLLLFALQ 501
SDGI+V II LLGAL+S+GHLK GSSTP+D+ SN LHE GGTMF+DKVSLLLFALQ
Sbjct: 1094 SDGIVVGIIGLLGALVSSGHLKFGSSTPADMTSNIVVNELHEGGGTMFNDKVSLLLFALQ 1153
Query: 502 KAFQAAPNRLMTGNVYTALLGASMNTSAVATEDGLNFYDSRHRFEHSQLLLVLLHSIPYA 561
KAFQAAPNRLMT NVYTALLGAS+N S+ T+DGLNFYDS HRFEH QLLLVLL S+PYA
Sbjct: 1154 KAFQAAPNRLMTSNVYTALLGASINASS--TDDGLNFYDSGHRFEHLQLLLVLLRSLPYA 1211
Query: 562 SRALQSRALQDLLILACSHPENRNSLTMMEEWPEWILEILISNYEMGASKQSSSPSLGDI 621
SRALQSRA+QDLL LACSHPENR+SLT MEEWPEWILE+LISNYEMG++K S+S + GDI
Sbjct: 1212 SRALQSRAIQDLLFLACSHPENRSSLTKMEEWPEWILEVLISNYEMGSNKDSTSANFGDI 1271
Query: 622 EDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRTRREESLPLFKRR 681
EDLIHNFLII+LEHSMRQKDGWKDIEATIHCAEWLS+VGGSSTG+QR RREESLP+FKRR
Sbjct: 1272 EDLIHNFLIIILEHSMRQKDGWKDIEATIHCAEWLSMVGGSSTGDQRIRREESLPIFKRR 1331
Query: 682 LLGGLLDFATRELQVQTQVIAAAAAGVAAEGLPPKDAKAEARNAAQLSVALVENAIVILM 741
L+GGLLDF+ RELQVQTQVIAAAAAGVAAEGL PKDAKAEA NAAQLSVALVEN+IVILM
Sbjct: 1332 LMGGLLDFSARELQVQTQVIAAAAAGVAAEGLSPKDAKAEAENAAQLSVALVENSIVILM 1391
Query: 742 LVEDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSSLSASIGAESLDSLGDRRS---DS 798
LVEDHLRLQSKLSC S D S SPLSLVSPL+N+S+ +IG +S +++G+R+S S
Sbjct: 1392 LVEDHLRLQSKLSCTSHSVDGSVSPLSLVSPLSNYSNSFKTIGEDSTEAVGNRKSLSGGS 1451
Query: 799 SGLPLDVLASMADANGQISAAVMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWKYRS 858
G+PLDVLASMADANGQISA+VMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWKYRS
Sbjct: 1452 GGVPLDVLASMADANGQISASVMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWKYRS 1511
Query: 859 RLWYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLVKKSVSMLQALLLDESGL 918
RLWYGVG S ++ GGGGSGW+SW S+LEKDANG+WIELPLVKKSV+MLQALLLDESGL
Sbjct: 1512 RLWYGVG-SSTTAVFGGGGSGWESWKSTLEKDANGHWIELPLVKKSVTMLQALLLDESGL 1570
Query: 919 GGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMALLSMREEDNGEDSMFMRNVNMED 978
GGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRM L+SMREED+G DSM MRNV+ ED
Sbjct: 1571 GGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMVLVSMREEDDGADSMLMRNVSFED 1630
Query: 979 EMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLY 1038
MSEGL+R A N+ SLDN+A +STRKPRSALLWSVLSPVLNMPIS+SKRQRVLVASCVLY
Sbjct: 1631 RMSEGLYRQAGNMMSLDNNARMSTRKPRSALLWSVLSPVLNMPISESKRQRVLVASCVLY 1690
Query: 1039 SEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLILDDRALA 1098
SEVWH+VSRDRK LRKQYLEAILPPFVA+LRRWRPLLAGIHELATADGLNPLI+DDRALA
Sbjct: 1691 SEVWHAVSRDRKPLRKQYLEAILPPFVAILRRWRPLLAGIHELATADGLNPLIVDDRALA 1750
Query: 1099 ADSLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSLLER 1158
AD+LP+EAA+AMIS+ WAAAFASPPAAMALAMIAAGA GG+ AP T+ LRRD+S+LER
Sbjct: 1751 ADALPIEAALAMISSDWAAAFASPPAAMALAMIAAGAGGGETTAPARTTYLRRDSSVLER 1810
Query: 1159 KQTRLYTFSSFQKTSEVTNKSSPLPKDKASAKAAALAAARDLERNAKIGSGRGLSAVAMA 1218
K RL+TFSSFQK E+ +KS PKDKA+AKAAALAAARDLERNAKIGSGRGLSAVAMA
Sbjct: 1811 KTVRLHTFSSFQKPLELPSKSPATPKDKAAAKAAALAAARDLERNAKIGSGRGLSAVAMA 1870
Query: 1219 TSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGKDFNALSYKFIAVLVASFA 1278
TSAQRRN SD ERV RWN+S+AMG AWMECLQ DT+SVYGKDFN LSYKF+AVLVASFA
Sbjct: 1871 TSAQRRNTSDMERVRRWNVSDAMGTAWMECLQSADTRSVYGKDFNNLSYKFVAVLVASFA 1930
Query: 1279 LARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFW 1338
LARNMQRSEIDRR+QV ++SRH C+G+RAWRKLIH LIEMKCLFGPF DHL +P R+FW
Sbjct: 1931 LARNMQRSEIDRRTQVVVVSRHHLCSGIRAWRKLIHNLIEMKCLFGPFGDHLCNPDRVFW 1990
Query: 1339 KLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAISM 1398
KLDFMESS+RMR+CLRRNY GSDHFGAAAN+ED ++ K +ENVI+PSNAPI+AAEAISM
Sbjct: 1991 KLDFMESSARMRQCLRRNYKGSDHFGAAANFEDHMDMKHDRENVIDPSNAPILAAEAISM 2050
Query: 1399 EAVNEDDEQTENDNL-DDRVYNLDNVGEDQTTVSEKIEQTLQASADSSDIPPARDQDLVS 1457
+NE+DEQ + DNL + +++ G++Q S EQ QAS + D P A +QD+V
Sbjct: 2051 GGINEEDEQADIDNLVESEAIDMEQNGKNQPKSSGMAEQPPQASTEYIDTPIANNQDVVQ 2110
Query: 1458 SSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEG--- 1514
+AV PGYVPSELDERIV EL SSMVRPLRV+RGTFQ+TTRRINFIVDNTE +G
Sbjct: 2111 GPSAVAPGYVPSELDERIVLELSSSMVRPLRVVRGTFQITTRRINFIVDNTECNGDGLDC 2170
Query: 1515 TSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAI 1574
+SE+R+QEKDRSWLMSSLHQI+SRRYLLRRSALELFM+DRSNFFFDFGSTEGRRNAYRAI
Sbjct: 2171 SSEIRDQEKDRSWLMSSLHQIFSRRYLLRRSALELFMIDRSNFFFDFGSTEGRRNAYRAI 2230
Query: 1575 VQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYP 1634
VQARP L++IYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYP
Sbjct: 2231 VQARPLQLSNIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYP 2290
Query: 1635 VFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSH 1694
VFPWILSDYSS+ LDLA+PSSYRDLSKPVGALNPD+L KFQERYSSFDDP+IPKFHYGSH
Sbjct: 2291 VFPWILSDYSSKYLDLADPSSYRDLSKPVGALNPDRLTKFQERYSSFDDPIIPKFHYGSH 2350
Query: 1695 YSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPEL 1754
YSSAGTVLYYL RVEPFTTLSIQLQGGKFDHADRMFSDI +TWNGVLEDMSDVKELVPEL
Sbjct: 2351 YSSAGTVLYYLTRVEPFTTLSIQLQGGKFDHADRMFSDIGSTWNGVLEDMSDVKELVPEL 2410
Query: 1755 FYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWV 1814
FYLPEILTNENSIDFGTTQLGGKLDSV LPPWAENPVDFIHKHRMALES++VSAHLHEW+
Sbjct: 2411 FYLPEILTNENSIDFGTTQLGGKLDSVKLPPWAENPVDFIHKHRMALESEHVSAHLHEWI 2470
Query: 1815 DLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTV 1874
DLIFGYKQRGKEAI ANNVFFYITYEGTVD+DKI+DPVQQRA QDQIAYFGQTPSQLLT
Sbjct: 2471 DLIFGYKQRGKEAILANNVFFYITYEGTVDVDKITDPVQQRATQDQIAYFGQTPSQLLTT 2530
Query: 1875 PHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVDMNAPAAH 1934
PH+KKM L DV+HLQTIFRNPKEVKPYAVP PERCNLPAAA+HASSD+VVIVD+NAPAAH
Sbjct: 2531 PHLKKMRLADVLHLQTIFRNPKEVKPYAVPNPERCNLPAAAMHASSDSVVIVDINAPAAH 2590
Query: 1935 IARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASS 1994
+A+H WQPNTPDGQG PFLF HGKA S +SGTF+RMFKGP GS +DEWHFPRALAFA+S
Sbjct: 2591 LAQHKWQPNTPDGQGMPFLFHHGKAIGSSSSGTFMRMFKGPTGSNSDEWHFPRALAFATS 2650
Query: 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV 2054
GIRSSA+VSIT DKEIITGGHVD SI+L++SDGAK LETA GHCAPVTCLALS DSN+LV
Sbjct: 2651 GIRSSAIVSITCDKEIITGGHVDNSIRLISSDGAKALETARGHCAPVTCLALSPDSNYLV 2710
Query: 2055 TGSQDTTILLWRIHR-AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113
TGS+DTT+LLWRIHR + + + EPS+ GTP S S+T AN ADKSRRRRIEGPI
Sbjct: 2711 TGSRDTTVLLWRIHRASISHASSISEPSTASGTP-TSASSNTLANILADKSRRRRIEGPI 2769
Query: 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGV 2173
H+LRGH +EI+CCCVSSDLG+VVSCS SSD+LLHS+R+GRLIRRLVGV+AHA+ LSS+G+
Sbjct: 2770 HILRGHFKEIVCCCVSSDLGIVVSCSQSSDVLLHSVRKGRLIRRLVGVEAHAICLSSDGI 2829
Query: 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233
IMTWNK H LS+FTLNG+L++ A++P S SI CMEIS++G SALIG+NS + N N
Sbjct: 2830 IMTWNKTSHNLSTFTLNGILISSAQIPFSSSISCMEISVNGESALIGINSYTENEAVCTN 2889
Query: 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALA 2293
L + EDFD SD++ N+R D SPSICFL+L+TLKVFH LKLGEGQDITALA
Sbjct: 2890 SGDLRFNKPENEDFDAESDETRKNHRLDISSPSICFLNLYTLKVFHTLKLGEGQDITALA 2949
Query: 2294 LNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGDGLSPLIK 2341
LNKDNTNLLVST DKQLI+FTDP LSLKVVDQMLKLGWEGDGLSPLIK
Sbjct: 2950 LNKDNTNLLVSTTDKQLIIFTDPTLSLKVVDQMLKLGWEGDGLSPLIK 2997
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541368|ref|XP_002511748.1| nucleotide binding protein, putative [Ricinus communis] gi|223548928|gb|EEF50417.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3491 bits (9051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1865/2328 (80%), Positives = 2042/2328 (87%), Gaps = 34/2328 (1%)
Query: 24 SSGMVRRPAEVLGQVHVATRMRPAEALWALAYGGPMSLLTLTVGNVHKESLEPQPGNFPL 83
++GM+RRPAEVLGQVHVA RMRP EALWALAYGGPMS+L + + NV K+SLEP+ G+ L
Sbjct: 617 AAGMLRRPAEVLGQVHVAMRMRPVEALWALAYGGPMSILPIAISNVQKDSLEPEQGSDSL 676
Query: 84 SLATAALAAPIFRIISIAIQHPGNNEELIRTRGPEVLSRILNYLLKTLSSLGSGKHNGVG 143
SLATA LAAP+FRIISIAIQHP NNEEL +TRGPE+LS+IL YLL+TLSSL GKHNGVG
Sbjct: 677 SLATATLAAPVFRIISIAIQHPRNNEELCKTRGPEILSKILKYLLQTLSSLDRGKHNGVG 736
Query: 144 DEELVAAVVSLCQSQKSNHALKVQLFSTLLLDLRIWSLCSYGLQKKLLSSLADMVFTESS 203
DEELVA+VVSLCQSQK NH LKVQLFSTLLLDL+IWSLC+YGLQKKLLSSLADMVF+ESS
Sbjct: 737 DEELVASVVSLCQSQKFNHTLKVQLFSTLLLDLKIWSLCNYGLQKKLLSSLADMVFSESS 796
Query: 204 VMRDANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAMRPMGEVNALVDELLVIIELLIGA 263
VMRDANAIQMLLDGCRRCYWTIREKDSV+TFSLDEA RP+GE+NALVDELLVIIELLIGA
Sbjct: 797 VMRDANAIQMLLDGCRRCYWTIREKDSVSTFSLDEATRPVGELNALVDELLVIIELLIGA 856
Query: 264 TPPSLAAEDVCRLLGFLVDCPQPNQVARVLHLIYRLVVQPNTARAQRFAETFLASGGIES 323
PS+ A+D+ LLGF+VDCPQ NQ+ARVLHLIYRLVVQPN+ARA FAE F+ GGIE+
Sbjct: 857 ASPSMVADDLRCLLGFIVDCPQSNQIARVLHLIYRLVVQPNSARANTFAEAFVTCGGIET 916
Query: 324 LLVLLQKEAKAGDHSVPVPVTKSDESPSVQGTEPDSESANLERSEDDIVGSQKESDSQEK 383
LLVLLQ+EAKAGDHS+ +TKS++S S++ +E D+ + E+ ++ V K+ S EK
Sbjct: 917 LLVLLQREAKAGDHSISESMTKSNDSLSIEESELDASNEVPEKHPNNEV---KDFTSYEK 973
Query: 384 DSESQPFNTDRGPVAISNTEKIERTSSVSENPFVKDLGGISLSISADNARNNVYNIDKSD 443
D ES+P +T P A S + +IER SSVSENPFVK++GGISLSISADNARNNVYN DKSD
Sbjct: 974 DFESEPSDTAGSPAASSASLRIERVSSVSENPFVKNVGGISLSISADNARNNVYNDDKSD 1033
Query: 444 GIIVAIIELLGALISAGHLKVGSSTPSDVASNFPSIGLHERGGTMFDDKVSLLLFALQKA 503
GI+VAII LLGAL++ GHLK GS PSD S LHE GG+MFDDKVSLLLFALQKA
Sbjct: 1034 GIVVAIIGLLGALVTCGHLKFGSCAPSDTTSYLLGGALHEGGGSMFDDKVSLLLFALQKA 1093
Query: 504 FQAAPNRLMTGNVYTALLGASMNTSAVATEDGLNFYDSRHRFEHSQLLLVLLHSIPYASR 563
FQAAPNRLMT NVYTALL AS+N S+ EDGLNFYDS HRFEH QLLLVLL S+PYASR
Sbjct: 1094 FQAAPNRLMTTNVYTALLAASINASS--AEDGLNFYDSGHRFEHLQLLLVLLRSLPYASR 1151
Query: 564 ALQSRALQDLLILACSHPENRNSLTMMEEWPEWILEILISNYEMGASKQSSSPSLGDIED 623
ALQSRALQDLL LACSHPENRNSLT MEEWPEWILE+LISNYEMGA K SS SLGDIED
Sbjct: 1152 ALQSRALQDLLFLACSHPENRNSLTKMEEWPEWILEVLISNYEMGAMKNSSLASLGDIED 1211
Query: 624 LIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRTRREESLPLFKRRLL 683
L+HNFLIIMLEHSMRQKDGWKDIEA IHCAEWLSIVGGSSTG+QR RREESLP+FKRRLL
Sbjct: 1212 LVHNFLIIMLEHSMRQKDGWKDIEAAIHCAEWLSIVGGSSTGDQRVRREESLPIFKRRLL 1271
Query: 684 GGLLDFATRELQVQTQVIAAAAAGVAAEGLPPKDAKAEARNAAQLSVALVENAIVILMLV 743
GGLLDFA RELQVQTQVIAAAAAGVAAEGL PK+AKAEA NAA LSVALVENAIVILMLV
Sbjct: 1272 GGLLDFAARELQVQTQVIAAAAAGVAAEGLSPKEAKAEAENAAHLSVALVENAIVILMLV 1331
Query: 744 EDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSSLSASIGAESLDSLGDRRS-DSSGLP 802
EDHLRLQSKLSCASR D+SPSPLSLVSPLNN S AS +S ++LGDR+S DS GLP
Sbjct: 1332 EDHLRLQSKLSCASRVVDSSPSPLSLVSPLNNRPSSLASADRDSFEALGDRKSSDSGGLP 1391
Query: 803 LDV-----LASMADANGQISAAVMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWKYR 857
LDV LASMADANGQISA+VMERLTAAAAAEPYESV CAFVSYGS AMDL+EGWKYR
Sbjct: 1392 LDVYFLKVLASMADANGQISASVMERLTAAAAAEPYESVYCAFVSYGSIAMDLSEGWKYR 1451
Query: 858 SRLWYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLVKKSVSMLQALLLDESG 917
SRLWYGVG PSK++ GGGGSGW+SW S+LEKDANGNWIELPLVKKSVSMLQALLLDESG
Sbjct: 1452 SRLWYGVGFPSKTAVFGGGGSGWESWRSALEKDANGNWIELPLVKKSVSMLQALLLDESG 1511
Query: 918 LGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMALLSMREEDNGEDSMFMRNVNME 977
LGGGLGIGGGSGTGMGGMA LYQLLDSDQPFLCMLRM LLSMREED+GE SM +RN E
Sbjct: 1512 LGGGLGIGGGSGTGMGGMALLYQLLDSDQPFLCMLRMVLLSMREEDDGETSMLLRN--KE 1569
Query: 978 DEMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVL 1037
D +SEG I S +N++ +S R+PRSALLWSVLSPVLNMPISDSKRQRVLVASCVL
Sbjct: 1570 DRLSEG-------IASSENNSRMSMRQPRSALLWSVLSPVLNMPISDSKRQRVLVASCVL 1622
Query: 1038 YSEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLILDDRAL 1097
+SEVWH+V R RK LRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLI+DDRAL
Sbjct: 1623 FSEVWHAVGRYRKPLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLIVDDRAL 1682
Query: 1098 AADSLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSLLE 1157
AAD+LP+EAA++MIS WAAAFASPPAAMALAMIAAGAAGG+AP P T+QLRRD+SLLE
Sbjct: 1683 AADALPIEAALSMISPAWAAAFASPPAAMALAMIAAGAAGGEAPVPATTAQLRRDSSLLE 1742
Query: 1158 RKQTRLYTFSSFQKTSEVTNKSSPLPKDKASAKAAALAAARDLERNAKIGSGRGLSAVAM 1217
RK TRL+TFSSFQK EVTNK LPKDKA+AKAAALAAARDLERNAKIGSGRGLSAVAM
Sbjct: 1743 RKSTRLHTFSSFQKPLEVTNKIPALPKDKAAAKAAALAAARDLERNAKIGSGRGLSAVAM 1802
Query: 1218 ATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGKDFNALSYKFIAVLVASF 1277
ATSAQRRNASD ERV RWN +EAMGVAWMEC+QP DT+SVYGKDFNALSYKF+AVLVASF
Sbjct: 1803 ATSAQRRNASDMERVRRWNTTEAMGVAWMECMQPFDTRSVYGKDFNALSYKFVAVLVASF 1862
Query: 1278 ALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIF 1337
ALARNMQRSE+DRR+QVD+I++H +G+R WRKLIHCLIEM LFGP D L P R+F
Sbjct: 1863 ALARNMQRSEVDRRAQVDVIAQHHLSSGIREWRKLIHCLIEMNSLFGPLGDLLCSPERVF 1922
Query: 1338 WKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAIS 1397
WKLDFMESSSRMRRCLRRNY GSDHFGAAANYED IERK Q V P++AAEAIS
Sbjct: 1923 WKLDFMESSSRMRRCLRRNYRGSDHFGAAANYEDTIERKHDQGKV------PVLAAEAIS 1976
Query: 1398 MEAVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIEQTLQASADSSDIPPARDQDLVS 1457
ME +NEDDE +E DNLD R Y+ + GE+Q S ++ LQ SA+S D DQDL
Sbjct: 1977 MEGINEDDEHSEIDNLDGRAYDTEQGGENQPRPSGTTQENLQQSAESIDAQLVGDQDL-E 2035
Query: 1458 SSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESP-EEGT- 1515
SS AV PGYVPS+LDERIV ELPSSMVRPLRVIRGTFQVTTRRINFIVD TE+ +GT
Sbjct: 2036 SSPAVAPGYVPSDLDERIVLELPSSMVRPLRVIRGTFQVTTRRINFIVDATENTVMDGTE 2095
Query: 1516 -SELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAI 1574
SE RNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSN+FFDF STEGRRNAYRAI
Sbjct: 2096 SSESRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNYFFDFASTEGRRNAYRAI 2155
Query: 1575 VQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYP 1634
VQ RPPHLN+IYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYP
Sbjct: 2156 VQLRPPHLNNIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYP 2215
Query: 1635 VFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSH 1694
VFPWILSDY+S++LDL+NPSSYRDLSKPVGALNPD+LKKFQERYSSFDDPVIPKFHYGSH
Sbjct: 2216 VFPWILSDYNSKSLDLSNPSSYRDLSKPVGALNPDRLKKFQERYSSFDDPVIPKFHYGSH 2275
Query: 1695 YSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPEL 1754
YSSAGTVLYYL RVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSD+KELVPEL
Sbjct: 2276 YSSAGTVLYYLVRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDLKELVPEL 2335
Query: 1755 FYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWV 1814
F+LPEILTNEN IDFGTTQ+GG+LDSV LPPWAENPVDFIHKHRMALES++VSAHLHEW+
Sbjct: 2336 FFLPEILTNENLIDFGTTQIGGRLDSVNLPPWAENPVDFIHKHRMALESEHVSAHLHEWI 2395
Query: 1815 DLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTV 1874
DLIFGYKQRGKEAI ANNVFFYITYEGTVDIDKISD VQQRA QDQIAYFGQTPSQLLTV
Sbjct: 2396 DLIFGYKQRGKEAILANNVFFYITYEGTVDIDKISDTVQQRATQDQIAYFGQTPSQLLTV 2455
Query: 1875 PHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVDMNAPAAH 1934
PH+K+MPL DV+HLQTIFRNPKEVKPY +P PERCNLPAAAIHASSDTV+I D+NAPAAH
Sbjct: 2456 PHLKRMPLADVLHLQTIFRNPKEVKPYPIPSPERCNLPAAAIHASSDTVIIADINAPAAH 2515
Query: 1935 IARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASS 1994
+A H WQP+TPDGQG PFLFQHGKASAS ASGTF+RMFKGP GSG DEW FP+ALAFASS
Sbjct: 2516 VAHHKWQPSTPDGQGAPFLFQHGKASASSASGTFMRMFKGPAGSGPDEWQFPQALAFASS 2575
Query: 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV 2054
GIRS+AVVSIT DKEIITGGHVD SIKL++ DGAKTLETA GH APVTCLALS DSN+LV
Sbjct: 2576 GIRSTAVVSITCDKEIITGGHVDNSIKLVSLDGAKTLETAIGHSAPVTCLALSPDSNYLV 2635
Query: 2055 TGSQDTTILLWRIHRAFT-SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113
TGS+DTT+LLW+IHRAFT + EPS+G+GTP SST AN ADKSRRRRIEGPI
Sbjct: 2636 TGSRDTTVLLWKIHRAFTSRSSSMSEPSTGIGTPST---SSTLANILADKSRRRRIEGPI 2692
Query: 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGV 2173
HVLRGHHREILCCCVSSDLG+ VS S SSD+LLHSIRRGRLIRRLVGV+AHAVS+SSEGV
Sbjct: 2693 HVLRGHHREILCCCVSSDLGIAVSGSLSSDVLLHSIRRGRLIRRLVGVEAHAVSISSEGV 2752
Query: 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233
+MTW+K Q+TLS+FTLNGV +ARA+LP SGSI C+EIS+DG +AL+G+NS S N+ + +
Sbjct: 2753 VMTWDKSQNTLSTFTLNGVPIARAQLPFSGSISCIEISVDGKNALVGINSCSENDRTCNT 2812
Query: 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALA 2293
+ K+ G D L ++S N D P PS+CFLDLH LKVFHVL+LGEGQDITALA
Sbjct: 2813 NMDFSLKEPGGGDCGLEPEKSGAKNNLDVPIPSVCFLDLHRLKVFHVLRLGEGQDITALA 2872
Query: 2294 LNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGDGLSPLIK 2341
LN DNTNLLVSTADKQLI+FTDPALSLKVVD MLKLGWEG+GLSPLIK
Sbjct: 2873 LNNDNTNLLVSTADKQLIIFTDPALSLKVVDHMLKLGWEGEGLSPLIK 2920
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433113|ref|XP_004134342.1| PREDICTED: uncharacterized protein LOC101215970 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3427 bits (8886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1778/2327 (76%), Positives = 2000/2327 (85%), Gaps = 38/2327 (1%)
Query: 24 SSGMVRRPAEVLGQVHVATRMRPAEALWALAYGGPMSLLTLTVGNVHKESLEPQPGNFPL 83
++G +RRPAEVLGQVHVATRMRP EALWALAYGG MSLL L V NV + SL+PQ G+ PL
Sbjct: 673 AAGTLRRPAEVLGQVHVATRMRPVEALWALAYGGSMSLLPLVVSNVDEASLQPQEGSNPL 732
Query: 84 SLATAALAAPIFRIISIAIQHPGNNEELIRTRGPEVLSRILNYLLKTLSSLGSGKHNGVG 143
S ATA LAA IFRIIS+A+QHP NNEE R RGPE+LSRILNYLL+TLSSL GKH+GV
Sbjct: 733 SFATANLAASIFRIISMAVQHPKNNEEFSRVRGPEILSRILNYLLRTLSSLDPGKHDGVE 792
Query: 144 DEELVAAVVSLCQSQKSNHALKVQLFSTLLLDLRIWSLCSYGLQKKLLSSLADMVFTESS 203
DEELVAA+VSLCQSQKSNH LKVQLFSTLLLDL+IW LC+YGLQKKLLSSLADMVFTESS
Sbjct: 793 DEELVAAIVSLCQSQKSNHILKVQLFSTLLLDLKIWCLCNYGLQKKLLSSLADMVFTESS 852
Query: 204 VMRDANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAMRPMGEVNALVDELLVIIELLIGA 263
VMR+ANAIQMLLDGCRRCYWTI EKDSVNTFSL+E RP+GEVNALVDELLV+IELLI A
Sbjct: 853 VMREANAIQMLLDGCRRCYWTIYEKDSVNTFSLNEDQRPVGEVNALVDELLVVIELLIVA 912
Query: 264 TPPSLAAEDVCRLLGFLVDCPQPNQVARVLHLIYRLVVQPNTARAQRFAETFLASGGIES 323
PPSLA++DV LLGF+VDCPQPNQVARVLHL+YRLVVQPNT+RAQ FAE F+A GGIE+
Sbjct: 913 APPSLASDDVRCLLGFMVDCPQPNQVARVLHLVYRLVVQPNTSRAQTFAEAFIACGGIET 972
Query: 324 LLVLLQKEAKAGDHSVPVPVTKSDESPSVQGTEPDSESANLERSEDDIVGSQKESDSQEK 383
LLVLLQ+E KAGD S P +T + E+ + DS ER D +G+ +E
Sbjct: 973 LLVLLQREVKAGDVSDPEVIT-TPETSFFHESGVDSGDGVPERILDGDIGAVEEEKLNVP 1031
Query: 384 DSESQPFNTDRGPV----AISNTEKIERTSSVSENPFVKDLGGISLSISADNARNNVYNI 439
+ + Q +T+ G V A S +IER S+SE+ FVK+LGGISLSI+ADNARNNVYN+
Sbjct: 1032 EKDWQFESTEIGGVRHFGAASPGVRIERMLSISESSFVKNLGGISLSITADNARNNVYNV 1091
Query: 440 DKSDGIIVAIIELLGALISAGHLKVGSSTPSDVASNFPSIGLHERGGTMFDDKVSLLLFA 499
DK DGI+V II L+GAL+++GHLK S +PSD +N GL + G +MFDDKVSLLL+A
Sbjct: 1092 DKRDGIVVGIIGLVGALVASGHLKFDSFSPSDATTNILGSGLPDGGSSMFDDKVSLLLYA 1151
Query: 500 LQKAFQAAPNRLMTGNVYTALLGASMNTSAVATEDGLNFYDSRHRFEHSQLLLVLLHSIP 559
LQKAFQAAPN+LMT NVYTAL+GAS+N S+ TEDGLNFYDS HRFEH QLLLVLL S+P
Sbjct: 1152 LQKAFQAAPNKLMTNNVYTALMGASINASS--TEDGLNFYDSGHRFEHLQLLLVLLRSLP 1209
Query: 560 YASRALQSRALQDLLILACSHPENRNSLTMMEEWPEWILEILISNYEMGASKQSSSPSLG 619
YASRA QSRALQDLL LACSHPENRNSLT MEEWPEWILEILISN+E+G SK S + S+G
Sbjct: 1210 YASRAFQSRALQDLLFLACSHPENRNSLTKMEEWPEWILEILISNHELGESKNSQTTSVG 1269
Query: 620 DIEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRTRREESLPLFK 679
D+EDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTG+QR RREESLP+FK
Sbjct: 1270 DVEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGDQRVRREESLPIFK 1329
Query: 680 RRLLGGLLDFATRELQVQTQVIAAAAAGVAAEGLPPKDAKAEARNAAQLSVALVENAIVI 739
RRLLGGLLDF+ RELQ QTQVIAAAAAGVAAEGL P DAKAEA NAAQLSV+LVENAIVI
Sbjct: 1330 RRLLGGLLDFSGRELQAQTQVIAAAAAGVAAEGLSPTDAKAEAENAAQLSVSLVENAIVI 1389
Query: 740 LMLVEDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSSLSASIGA---ESLDSLGDRRS 796
LMLVEDHLRLQSKLSCAS D SPLSLVSPLNN S+ +SIG + + S+ S
Sbjct: 1390 LMLVEDHLRLQSKLSCASSVADGYTSPLSLVSPLNNRSNSLSSIGGREPQEITSVRGSIS 1449
Query: 797 DSSGLPLDVLASMADANGQISAAVMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWKY 856
+ SGLPLDVLASMADANGQIS+ VMERLTAAAAAEPYESVSCAFVSYGS A DLA+GWKY
Sbjct: 1450 EPSGLPLDVLASMADANGQISSVVMERLTAAAAAEPYESVSCAFVSYGSYATDLADGWKY 1509
Query: 857 RSRLWYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLVKKSVSMLQALLLDES 916
RSRLWYGVGLPS + GGGGSGW+SW LEKD +GNWIELPLVKKSV+MLQALLLDES
Sbjct: 1510 RSRLWYGVGLPSNKALFGGGGSGWESWRF-LEKDNSGNWIELPLVKKSVAMLQALLLDES 1568
Query: 917 GLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMALLSMREEDNGEDSMFMRNVNM 976
GLGGGLGIGGGSGTGMGGM+ALYQLLDSDQPFLCMLRM LLSMRE+DNGED + MRN+++
Sbjct: 1569 GLGGGLGIGGGSGTGMGGMSALYQLLDSDQPFLCMLRMVLLSMREDDNGEDGILMRNISI 1628
Query: 977 EDEMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMPISDSKRQRVLVASCV 1036
+D + EG RKPRSALLWSVLSPVLNMPISDSKRQRVLVASCV
Sbjct: 1629 DDGIPEG-------------------RKPRSALLWSVLSPVLNMPISDSKRQRVLVASCV 1669
Query: 1037 LYSEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLILDDRA 1096
LYSEVWHSV +DR LRKQYLE+ILPPFVA+LRRWRPLLAGIHELATADGLNPL +DDRA
Sbjct: 1670 LYSEVWHSVGKDRNPLRKQYLESILPPFVAILRRWRPLLAGIHELATADGLNPLTVDDRA 1729
Query: 1097 LAADSLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSLL 1156
LAAD+LP+EAA+ MI+ WAAAFASPPAAMALAMIAAGA+GG+ AP TSQLRRD+SLL
Sbjct: 1730 LAADTLPIEAALGMIAPAWAAAFASPPAAMALAMIAAGASGGETTAPATTSQLRRDSSLL 1789
Query: 1157 ERKQTRLYTFSSFQKTSEVTNKSSPLPKDKASAKAAALAAARDLERNAKIGSGRGLSAVA 1216
ERK TRL+TFSSFQK EV N+ LPKDKA+AKAAALAAARDLERNAKIGSGRGLSAVA
Sbjct: 1790 ERKTTRLHTFSSFQKPLEVPNRPPSLPKDKAAAKAAALAAARDLERNAKIGSGRGLSAVA 1849
Query: 1217 MATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGKDFNALSYKFIAVLVAS 1276
MATSAQRRN DTERV+RWN SEAM VAWMECLQP DTKSVYGKDFNALSYKFIAVLVAS
Sbjct: 1850 MATSAQRRNTGDTERVKRWNNSEAMAVAWMECLQPFDTKSVYGKDFNALSYKFIAVLVAS 1909
Query: 1277 FALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRI 1336
FALARN+QRSE+DRR+QVD+I HR C G+RAWRKL+H LIEMKCLFGP +H S P R+
Sbjct: 1910 FALARNIQRSEVDRRTQVDVIDHHRMCKGIRAWRKLVHYLIEMKCLFGPIGEHFSKPSRV 1969
Query: 1337 FWKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAI 1396
FWKLD MESSSRMRRCLRRNY GSDH GAAANYEDQ++ K G+E ++ SNA I+AA+AI
Sbjct: 1970 FWKLDLMESSSRMRRCLRRNYRGSDHCGAAANYEDQVDLKNGEE-ALSSSNASILAADAI 2028
Query: 1397 SMEAVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIEQTLQASADSSDIPPARDQDLV 1456
++EAVN+DDEQ E D+LD R +++ D + ++E EQ LQASA+SS DQ+L+
Sbjct: 2029 AIEAVNDDDEQMEIDSLDGRTDDVEQSAVDSSKLTETSEQNLQASAESSSTQIVNDQELI 2088
Query: 1457 SSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTE--SPEEG 1514
S+ V PGYVPSELDERI+ ELPS+MVRPLRVI+GTFQVTTRRINFIVD+++ + +
Sbjct: 2089 QGSSPVAPGYVPSELDERIILELPSTMVRPLRVIQGTFQVTTRRINFIVDSSDLNATTDS 2148
Query: 1515 TSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAI 1574
+ + ++QEKDR+W+MSSLHQI+SRRYLLRRSALELFMVDRSN+FFDFGSTEGR+NAYRAI
Sbjct: 2149 SCKPKDQEKDRTWMMSSLHQIHSRRYLLRRSALELFMVDRSNYFFDFGSTEGRKNAYRAI 2208
Query: 1575 VQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYP 1634
VQ RPPHLND+YLATQRPEQLLKRTQLMERWARWEISNFEYLM LNTLAGRSYNDITQYP
Sbjct: 2209 VQVRPPHLNDVYLATQRPEQLLKRTQLMERWARWEISNFEYLMHLNTLAGRSYNDITQYP 2268
Query: 1635 VFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSH 1694
VFPWILSDY+SE+LDL++PSS+RDLSKPVGALN D+LKKFQERYSSF+DPVIPKFHYGSH
Sbjct: 2269 VFPWILSDYTSESLDLSDPSSFRDLSKPVGALNADRLKKFQERYSSFEDPVIPKFHYGSH 2328
Query: 1695 YSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPEL 1754
YSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMF DI+ TWNGVLEDMSDVKELVPEL
Sbjct: 2329 YSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFLDISGTWNGVLEDMSDVKELVPEL 2388
Query: 1755 FYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWV 1814
FYLPEILTNENSIDFGTTQLG LD V LPPWA+NP+DFIHKHRMALES++VSAHLHEW+
Sbjct: 2389 FYLPEILTNENSIDFGTTQLGQNLDFVKLPPWAKNPIDFIHKHRMALESEHVSAHLHEWI 2448
Query: 1815 DLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTV 1874
DLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDP QQRA QDQIAYFGQTPSQLLTV
Sbjct: 2449 DLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPAQQRATQDQIAYFGQTPSQLLTV 2508
Query: 1875 PHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVDMNAPAAH 1934
PH+KK PL DV+HLQTIFRNPK V+ Y VP PERCNLPAAAIHA+SDTVVIVD+NAPAAH
Sbjct: 2509 PHLKKKPLADVLHLQTIFRNPKSVRSYPVPTPERCNLPAAAIHATSDTVVIVDINAPAAH 2568
Query: 1935 IARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASS 1994
+A+H WQPNTPDGQG PFLFQHGK+S + SGTF+RMFKG GS ADEW FP+A AFA+S
Sbjct: 2569 VAQHKWQPNTPDGQGAPFLFQHGKSSLNSTSGTFMRMFKGQAGSTADEWQFPQAPAFAAS 2628
Query: 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV 2054
GIRSS++VSIT DK+IITGGHVD SIKL++SDG +TLETA GHCAPVTCL++S DSN+LV
Sbjct: 2629 GIRSSSIVSITWDKDIITGGHVDNSIKLISSDGGRTLETAYGHCAPVTCLSVSHDSNYLV 2688
Query: 2055 TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS-STPANASADKSRRRRIEGPI 2113
TGS+DTT+L+WRIHR T R+ ++ +S MGT ++ GS S ++ ADKSR+ RIEGPI
Sbjct: 2689 TGSRDTTLLVWRIHRLSTPRSSSVSETS-MGTGMSTSGSGSNLSSILADKSRKHRIEGPI 2747
Query: 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGV 2173
HVLRGHHREI+CCCV+SDLG+VVSCS SSD+L+HSIRRGRLIRRL G++AHAV LSSEGV
Sbjct: 2748 HVLRGHHREIVCCCVNSDLGIVVSCSQSSDILIHSIRRGRLIRRLAGIEAHAVCLSSEGV 2807
Query: 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233
I+TWN+ Q TLS+FTLNG L+ARA P S SI CMEIS+DG SALIG+NSS N + N
Sbjct: 2808 ILTWNESQCTLSTFTLNGNLIARAPFPFSSSISCMEISVDGESALIGINSSRQTNKTRSN 2867
Query: 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALA 2293
K+ + DL D++++++R D P PS+CFLDLHTLKVFH L+L EGQDITALA
Sbjct: 2868 SWDFKLKKP---ELDLTPDETLEDDRLDVPVPSVCFLDLHTLKVFHTLRLKEGQDITALA 2924
Query: 2294 LNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGDGLSPLI 2340
LNKDNTNLLVSTAD+QLIVFTDPALSLKVVDQMLK+GWEG+GLSPLI
Sbjct: 2925 LNKDNTNLLVSTADRQLIVFTDPALSLKVVDQMLKIGWEGEGLSPLI 2971
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530129|ref|XP_003533636.1| PREDICTED: uncharacterized protein LOC100800714 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3354 bits (8697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1771/2333 (75%), Positives = 1975/2333 (84%), Gaps = 59/2333 (2%)
Query: 24 SSGMVRRPAEVLGQVHVATRMRPAEALWALAYGGPMSLLTLTVGNVHKESLEPQPGNFPL 83
+SG+ RRPAEVLGQVHVA RMRP +ALWALAYGGP+SLL LT+ NVH+ +LEPQ N PL
Sbjct: 674 ASGVHRRPAEVLGQVHVAARMRPVDALWALAYGGPLSLLPLTISNVHEYTLEPQQENLPL 733
Query: 84 SLATAALAAPIFRIISIAIQHPGNNEELIRTRGPEVLSRILNYLLKTLSSLGSGKHNGVG 143
S ATA+LAAPIFRIIS AIQHP NNEEL RGPEVLS+ILN+LL+TLS L KH+GV
Sbjct: 734 SSATASLAAPIFRIISTAIQHPRNNEELAHGRGPEVLSKILNHLLQTLSLLDVRKHDGVR 793
Query: 144 DEELVAAVVSLCQSQKSNHALKVQLFSTLLLDLRIWSLCSYGLQKKLLSSLADMVFTESS 203
DEELVAAVVSLCQSQ NHALKVQLF+TLLLDL+IWSLCSYG+QKKLLSSLADMVFTES
Sbjct: 794 DEELVAAVVSLCQSQTINHALKVQLFTTLLLDLKIWSLCSYGIQKKLLSSLADMVFTESM 853
Query: 204 VMRDANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAMRPMGEVNALVDELLVIIELLIGA 263
VMRDANAIQMLLDGCRRCYWT+ E DS+NT SL A RP+GE+NALVDELLV++ELLI A
Sbjct: 854 VMRDANAIQMLLDGCRRCYWTVPEIDSLNTVSLTAATRPVGEINALVDELLVVVELLIVA 913
Query: 264 TPPSLAAEDVCRLLGFLVDCPQPNQVARVLHLIYRLVVQPNTARAQRFAETFLASGGIES 323
PPSLA+ DV LLGF+VDCPQPNQVARVLHL YRLVVQPNT+RA FAE FLA GGIE+
Sbjct: 914 APPSLASNDVRCLLGFMVDCPQPNQVARVLHLFYRLVVQPNTSRAHTFAEEFLACGGIET 973
Query: 324 LLVLLQKEAKAGDHSVPVPVTKSDESPSVQGTEPDSESANLERSEDDIVGSQKESDSQEK 383
LLVLLQ+EAKAGD V ES S+ P+S+ + + I SQK+ +EK
Sbjct: 974 LLVLLQREAKAGDSGVL-------ESLSMN---PESQKTEIAGGNEMIKESQKDEGLKEK 1023
Query: 384 DSESQPFNTDRGPVAISNTEKIERTSSVSENPF-----VKDLGGISLSISADNARNNVYN 438
SE+ + D+G +++ + + +S V+ + K+LGGISLSISAD+AR NVYN
Sbjct: 1024 -SEAIIQDNDQGSISVDSGSSPDPSSDVNSDRIFEITSAKNLGGISLSISADSARKNVYN 1082
Query: 439 IDKSDGIIVAIIELLGALISAGHLKVGSSTPSDVASNFPSIGLHERGGTMFDDKVSLLLF 498
DKSDGI+V II LLGAL+++GHL GS D SN +GLH++GGTMF+DKVSLLL+
Sbjct: 1083 ADKSDGIVVGIIGLLGALVASGHLTFGSRAGPDTTSNLLGVGLHDKGGTMFEDKVSLLLY 1142
Query: 499 ALQKAFQAAPNRLMTGNVYTALLGASMNTSAVATEDGLNFYDSRHRFEHSQLLLVLLHSI 558
ALQKAFQAAPNRLMT NVYTALL AS+N S+ +EDGLNFYDS HRFEHSQLLLVLLHS+
Sbjct: 1143 ALQKAFQAAPNRLMTNNVYTALLAASINASS--SEDGLNFYDSGHRFEHSQLLLVLLHSL 1200
Query: 559 PYASRALQSRALQDLLILACSHPENRNSLTMMEEWPEWILEILISNYEMGASKQSSSPSL 618
P+A R+LQSRALQDLL LACSHPENR+ LT MEEWPEWILE+LISNYE+G K S S ++
Sbjct: 1201 PFAPRSLQSRALQDLLFLACSHPENRSGLTTMEEWPEWILEVLISNYEVGPIKLSDSTTI 1260
Query: 619 GDIEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRTRREESLPLF 678
GDIEDLIHNFL IMLEHSMRQKDGWKDIE TIHCAEWLSIVGGSSTGEQR RREESLP+F
Sbjct: 1261 GDIEDLIHNFLSIMLEHSMRQKDGWKDIEETIHCAEWLSIVGGSSTGEQRLRREESLPIF 1320
Query: 679 KRRLLGGLLDFATRELQVQTQVIAAAAAGVAAEGLPPKDAKAEARNAAQLSVALVENAIV 738
KRRLLGGLLDFA RELQVQTQ+IAAAAAGVAAEGL PKDAKAEA NAAQLSVALVENAIV
Sbjct: 1321 KRRLLGGLLDFAARELQVQTQIIAAAAAGVAAEGLSPKDAKAEAENAAQLSVALVENAIV 1380
Query: 739 ILMLVEDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSSLSASIGAESLDSLGDRRS-- 796
ILMLVEDHLRLQ K S ++ D+ PSPLS V NNHS+ S S ES++ + D RS
Sbjct: 1381 ILMLVEDHLRLQRKQSSSAHAPDSLPSPLSAVHATNNHSN-SLSTIEESIEVVDDCRSLD 1439
Query: 797 -DSSGLPLDVLASMADANGQISAAVMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWK 855
DS G+PLDVL+SMAD GQI VMERL AAAAAEPYESVSCAFVSYGSCA DLA+GWK
Sbjct: 1440 SDSGGVPLDVLSSMADGIGQIPTPVMERLAAAAAAEPYESVSCAFVSYGSCAKDLADGWK 1499
Query: 856 YRSRLWYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLVKKSVSMLQALLLDE 915
YRSRLWYGV L + GGGGSGWD W S++EKDANGNWIELPLVKKSV+MLQALLLDE
Sbjct: 1500 YRSRLWYGVNLSPSPAPFGGGGSGWDFWKSAIEKDANGNWIELPLVKKSVAMLQALLLDE 1559
Query: 916 SGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMALLSMREEDNGEDSMFMRNVN 975
SGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRM LLSMRE+D+GED M MRN +
Sbjct: 1560 SGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMVLLSMREDDDGEDHMLMRNTS 1619
Query: 976 MEDEMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMPISDSKRQRVLVASC 1035
ED +SEG RKPRSALLWSVLSPVLNMPISDSKRQRVLVA C
Sbjct: 1620 FEDAVSEG-------------------RKPRSALLWSVLSPVLNMPISDSKRQRVLVACC 1660
Query: 1036 VLYSEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLILDDR 1095
VLYSEV+H+VSRD+K LRKQYLEAILPPFVAVLRRWRPLLAGIHELATADG NPLI DDR
Sbjct: 1661 VLYSEVYHAVSRDQKPLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGSNPLIADDR 1720
Query: 1096 ALAADSLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSL 1155
ALAADSLP+EAA+AMIS WAAAFASPPA+MALAM+AAG +GG++ AP TSQLRRDTSL
Sbjct: 1721 ALAADSLPIEAALAMISPAWAAAFASPPASMALAMVAAGTSGGESRAPATTSQLRRDTSL 1780
Query: 1156 LERKQTRLYTFSSFQKTSEVTNKSSPLPKDKASAKAAALAAARDLERNAKIGSGRGLSAV 1215
+ERKQT+L TFSSFQK SEV NK+SPLPKDKASAKAAALAAARDLER AKIGSGRGLSAV
Sbjct: 1781 MERKQTKLTTFSSFQKPSEVPNKTSPLPKDKASAKAAALAAARDLERFAKIGSGRGLSAV 1840
Query: 1216 AMATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGKDFNALSYKFIAVLVA 1275
AMATSAQRRNASD ERV+RWNISEAMGV+WMECL PVDTK+VYGKDFNA SYK+IAVLVA
Sbjct: 1841 AMATSAQRRNASDMERVKRWNISEAMGVSWMECLHPVDTKAVYGKDFNAFSYKYIAVLVA 1900
Query: 1276 SFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRR 1335
SFALARNMQRSEIDRR+ VD+ISRHR TG+RAWRKLIH L+EM+ LFGPF DHL P
Sbjct: 1901 SFALARNMQRSEIDRRAYVDVISRHRISTGVRAWRKLIHRLLEMRSLFGPFADHLYSPPC 1960
Query: 1336 IFWKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEA 1395
+FWKLD MESSSRMRRCLRRNY GSDH G+AANYED K N + PI++AEA
Sbjct: 1961 VFWKLDLMESSSRMRRCLRRNYHGSDHLGSAANYEDYSGEK-------NDQHTPILSAEA 2013
Query: 1396 ISMEAVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIEQTLQASADSSDIPPARDQDL 1455
IS+E VNED+EQ E +NL+ R ++D+ G++QT +SE +Q++Q + +SS A D+DL
Sbjct: 2014 ISLETVNEDEEQVEIENLNARASDVDDKGDNQTRLSETADQSVQEALESSATQHASDEDL 2073
Query: 1456 VSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESP---- 1511
V SS+A+ PGYVPSELDERIV ELPSSMVRPL+VIRGTFQVT RRINFIVDN+E+
Sbjct: 2074 VQSSSAIAPGYVPSELDERIVLELPSSMVRPLKVIRGTFQVTNRRINFIVDNSETSTTMD 2133
Query: 1512 -EEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNA 1570
+ E QEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFG+ EGRRNA
Sbjct: 2134 GSDSIVEAGKQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGNGEGRRNA 2193
Query: 1571 YRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDI 1630
YR IVQARPPHLN+IYLATQRPEQLLKR QLMERWARWEISNFEYLMQLNTLAGRSYNDI
Sbjct: 2194 YRTIVQARPPHLNNIYLATQRPEQLLKRIQLMERWARWEISNFEYLMQLNTLAGRSYNDI 2253
Query: 1631 TQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFH 1690
TQYPVFPWILSDYS+E+LDL+NPSSYRDLSKP+GALNPD+L +FQERY+SFDDPVIPKFH
Sbjct: 2254 TQYPVFPWILSDYSAESLDLSNPSSYRDLSKPIGALNPDRLNRFQERYASFDDPVIPKFH 2313
Query: 1691 YGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKEL 1750
YGSHYSSAGTVLYYL RVEPFTTL+IQLQGGKFDHADRMFSDI ATWNGVLEDMSDVKEL
Sbjct: 2314 YGSHYSSAGTVLYYLVRVEPFTTLAIQLQGGKFDHADRMFSDIFATWNGVLEDMSDVKEL 2373
Query: 1751 VPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHL 1810
VPELFYLPE+LTNENSIDFGTTQ+GGKLD+V LP WAENP+DFIHKHR ALES+YVSAHL
Sbjct: 2374 VPELFYLPEVLTNENSIDFGTTQMGGKLDTVKLPAWAENPIDFIHKHRKALESEYVSAHL 2433
Query: 1811 HEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQ 1870
HEW+DLIFGYKQRGKEA++ANNVFFY TYEGTVD+DKISDPVQQRA QDQIAYFGQTPSQ
Sbjct: 2434 HEWIDLIFGYKQRGKEAVTANNVFFYTTYEGTVDLDKISDPVQQRAIQDQIAYFGQTPSQ 2493
Query: 1871 LLTVPHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVDMNA 1930
LLTVPH+KKMPL +V+HLQTIFRNPKEVKPYAVP PERCNLPAAAIHASSDTVV+VDMNA
Sbjct: 2494 LLTVPHLKKMPLAEVLHLQTIFRNPKEVKPYAVPFPERCNLPAAAIHASSDTVVVVDMNA 2553
Query: 1931 PAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALA 1990
PAAH+A+H WQPNTPDGQGTPFLFQH KA+ + A GT +RMFK P SG EW FP+A+A
Sbjct: 2554 PAAHVAQHKWQPNTPDGQGTPFLFQHRKATLASAGGTIMRMFKAPAASGG-EWQFPQAVA 2612
Query: 1991 FASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS 2050
FA SGIRS A+VSIT +KE+ITGGH D SI+L++SDGAKTLETA GHCAPVTCL LS DS
Sbjct: 2613 FAVSGIRSQAIVSITSNKEVITGGHADNSIRLISSDGAKTLETAYGHCAPVTCLGLSPDS 2672
Query: 2051 NFLVTGSQDTTILLWRIHRAFTSRTGTI-EPSSGMGTPGNSIGSSTPANASADKSRRRRI 2109
N+LVTGS+DTT+LLWRIHRA +S + + E S+G GT ++ SS+ +K RRRRI
Sbjct: 2673 NYLVTGSRDTTVLLWRIHRALSSHSSAVSEHSTGTGTLSSTSNSSSHL---IEKDRRRRI 2729
Query: 2110 EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLS 2169
EGPI VLRGHH EI CCV+SDLG+VVSCS SSD+LLHSIRRGRLIRRL GV+AH V LS
Sbjct: 2730 EGPIQVLRGHHSEIHSCCVNSDLGIVVSCSHSSDVLLHSIRRGRLIRRLDGVEAHTVCLS 2789
Query: 2170 SEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229
SEGV+MTWN+ QHTLS+FTLNG +ARA+L S SI CMEIS+DG SALIG+NS N
Sbjct: 2790 SEGVVMTWNESQHTLSTFTLNGTPIARAQLSFSCSISCMEISVDGTSALIGMNSLE-NGR 2848
Query: 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDI 2289
+Y++ S +SG DFD S+++ D + D SPSICFL +HTL+VFHVLKLGEGQDI
Sbjct: 2849 AYNSSPDSQSNKSGVVDFDSESEETFDYTQIDVRSPSICFLHMHTLEVFHVLKLGEGQDI 2908
Query: 2290 TALALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGDGLSPLIKS 2342
TALALNKDNTNLLVST DKQLI+FTDPALSLKVVDQMLKLGWEGDGL PLIKS
Sbjct: 2909 TALALNKDNTNLLVSTLDKQLIIFTDPALSLKVVDQMLKLGWEGDGLQPLIKS 2961
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506993|ref|XP_003623785.1| Neurobeachin-like protein [Medicago truncatula] gi|355498800|gb|AES80003.1| Neurobeachin-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 3235 bits (8388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1733/2433 (71%), Positives = 1963/2433 (80%), Gaps = 175/2433 (7%)
Query: 24 SSGMVRRPAEVLGQVHVATRMRPAEALWALAYGGPMSLLTLTVGNVHKESLEPQPGNFPL 83
+SG++RRPAEVLGQVHVATRMRP +ALWALAYGGP+SLL +T+ N+ +++LEP GN L
Sbjct: 667 ASGVLRRPAEVLGQVHVATRMRPGDALWALAYGGPLSLLPVTISNIDEDTLEPLQGNLSL 726
Query: 84 SLATAALAAPIFRIISIAIQHPGNNEELIRTRGPEVLSRILNYLLKTLSSLGSGKHNGVG 143
S AT +LAAPIFRIISIAIQHP NNEEL R RGPEVLS+ILNYLL+TLSSL GKH GVG
Sbjct: 727 SSATTSLAAPIFRIISIAIQHPRNNEELSRGRGPEVLSKILNYLLQTLSSLDVGKHEGVG 786
Query: 144 DEELVAAVVSLCQSQKSNHALKVQLFSTLLLDLRIWSLCSYGLQKKLLSSLADMVFTESS 203
DEELVAAVVS+CQSQK NH LKVQLF+TLLLDL+IWSLCSYG+QKKLLSSLADMVFTES+
Sbjct: 787 DEELVAAVVSVCQSQKINHTLKVQLFATLLLDLKIWSLCSYGIQKKLLSSLADMVFTEST 846
Query: 204 VMRDANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAMRPMGEVNALVDELLVIIELLIGA 263
VMRDANAIQMLLDGCRRCYW +RE DSV++FSL A RP+GE+NALVDELLV++ELLI A
Sbjct: 847 VMRDANAIQMLLDGCRRCYWIVREIDSVDSFSLAGATRPVGEINALVDELLVVVELLIVA 906
Query: 264 TPPSLAAEDVCRLLGFLVDCPQPNQVARVLHLIYRLVVQPNTARAQRFAETFLASGGIES 323
PPSL + DV LLGF+VDCPQPNQVARVLHL YR+VVQPN +RA FAE FLA GGIE+
Sbjct: 907 APPSLVSADVRCLLGFMVDCPQPNQVARVLHLFYRMVVQPNASRANTFAEEFLAGGGIET 966
Query: 324 LLVLLQKEAKAGDHSVPVPVTKSDESPSVQGTEPDSESANLERSEDDIVGSQKESDSQEK 383
LLVLLQ+EAKAGD V + S ++P ++ TE D + N ERS+DD GS+
Sbjct: 967 LLVLLQREAKAGDSGV---MESSSKNPELEKTEIDGSNENTERSQDD-EGSE-------- 1014
Query: 384 DSESQPFNTDRGPVAISNTEKIERTSSVSENPFVKDLGGISLSISADNARNNVYNIDKSD 443
D SQ ++ P S +R + SE VK+LGGISLSISAD+AR NVYNIDKSD
Sbjct: 1015 DKRSQSVDSGNSPHHSSPDINSDRMAFASETSSVKNLGGISLSISADSARKNVYNIDKSD 1074
Query: 444 GIIVAIIELLGALISAGHLKVGSSTPSDVASNFPSIGLHERGGTMFDDKVSLLLFALQKA 503
GI+V II LLGAL+++G L+ S D SN +GLH+RGGTMF+DKVSLLL+ALQKA
Sbjct: 1075 GIVVGIIGLLGALVASGQLRFVSCASPDTTSNLYGVGLHDRGGTMFEDKVSLLLYALQKA 1134
Query: 504 FQAAPNRLMTGNVYTALLGASMNTSAVATEDGLNFYDSRHRFEHSQLLLVLLHSIPYASR 563
FQAAPNRLMT NVYTALL AS+N S++ EDGLNFYDS HRFEHSQLLLVLLHS+P+A R
Sbjct: 1135 FQAAPNRLMTNNVYTALLAASINASSL--EDGLNFYDSGHRFEHSQLLLVLLHSLPFAPR 1192
Query: 564 ALQSRALQDLLILACSHPENRNSLTMMEEWPEWILEILISNYEMGASKQSSSPSLGDIED 623
+LQSRALQDLL LACSHPENRNS+ MEEWPEWILEILISNYE+G+SK S S S+GD+ED
Sbjct: 1193 SLQSRALQDLLFLACSHPENRNSMINMEEWPEWILEILISNYEVGSSKLSDSTSVGDVED 1252
Query: 624 LIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRTRREESLPLFKRRLL 683
LIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQR RREESLP+FKRRLL
Sbjct: 1253 LIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRVRREESLPIFKRRLL 1312
Query: 684 GGLLDFATRELQVQTQVIAAAAAGVAAEGLPPKDAKAEARNAAQLSVALVENAIVILMLV 743
G LLDFA RELQVQTQ+IAAAAAGVAAEGL P DAKAEA NAAQLSVALVENAIVILMLV
Sbjct: 1313 GVLLDFAARELQVQTQIIAAAAAGVAAEGLSPTDAKAEADNAAQLSVALVENAIVILMLV 1372
Query: 744 EDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSSLSASIGAESLDSLGDRRSDSSGL-- 801
EDHLRLQSK S +SR D SPSPL+ + P+++HS+ ++I ES + + D RS SG
Sbjct: 1373 EDHLRLQSKQS-SSRTADISPSPLTTLYPISDHSTSLSTID-ESAEEVADSRSSLSGGSG 1430
Query: 802 --PLDVLASMADANGQISAAVMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWKYRSR 859
PLD L+SMAD GQI +VME++ AAAAAEPYESVSCAFVS+GSCA DLA+GWKYRSR
Sbjct: 1431 GNPLDALSSMADGTGQIPTSVMEKIAAAAAAEPYESVSCAFVSHGSCAKDLADGWKYRSR 1490
Query: 860 LWYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLVKKSVSMLQALLLDESGLG 919
LWYGVGLP + GGGGSGWD W S+LEKDANGNWIELPLV+KSV+MLQALLLDESGLG
Sbjct: 1491 LWYGVGLPQNPAAFGGGGSGWDFWKSTLEKDANGNWIELPLVRKSVAMLQALLLDESGLG 1550
Query: 920 GGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMALLSMREEDNGEDSMFMRNVNMEDE 979
GGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRM LLSMRE+DNGED M MRN +++D
Sbjct: 1551 GGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMVLLSMREDDNGEDYMLMRNTSIDDA 1610
Query: 980 MSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLYS 1039
SEG RKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLY+
Sbjct: 1611 ASEG-------------------RKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLYA 1651
Query: 1040 EVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLILDDRALAA 1099
EV+H+VSRD+K LRKQYLEAILPPFVAVLRRWRPLLA IHELATADGLNPL+ DDRALAA
Sbjct: 1652 EVYHAVSRDQKPLRKQYLEAILPPFVAVLRRWRPLLASIHELATADGLNPLVADDRALAA 1711
Query: 1100 DSLPLE------------AAIAMISAPWAAAFASPPAAMALAMIAAGA------------ 1135
DSLP+E + + + P+ A + AA+A+ A A
Sbjct: 1712 DSLPIEVMAGVATLLELQSLLGCLCMPFCAEKNTFFAALAMIAPAWAAAFASPPAAMALA 1771
Query: 1136 ------AGGDAPAPVATSQLRRDTSLLERKQTRLYTFSSFQKTSEVTNKSSPLPKDKASA 1189
+GG++ AP TS LRRDTSLLERKQTRL+TFSSFQ+ EV+NK+ PLPKDKA+A
Sbjct: 1772 MIAAGASGGESQAPAQTSHLRRDTSLLERKQTRLHTFSSFQRPLEVSNKTPPLPKDKAAA 1831
Query: 1190 KAAALAAARDLERNAKIGSGRGLSAVAMATSAQRRNASDTERVERWNISEAMGVAWMECL 1249
KAAALAAARDLER AKIGSGRGLSAVAMATSAQRR+ASD ERV RWN+SEAMGVAWMECL
Sbjct: 1832 KAAALAAARDLERFAKIGSGRGLSAVAMATSAQRRSASDMERVNRWNVSEAMGVAWMECL 1891
Query: 1250 QPVDTKSVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAW 1309
QPV TKSVYGKDFNA SYK+IAVLVASFALARNMQRSE+DRR+ VD+++RHR TG+ AW
Sbjct: 1892 QPVGTKSVYGKDFNAFSYKYIAVLVASFALARNMQRSEVDRRAYVDIVTRHRISTGVHAW 1951
Query: 1310 RKLIHCLIEMKCLFGPFEDHLSDPRRIFWKLDFMESSSRMRRCLRRNYMGSDHFGAAANY 1369
RKLIH LIEM+ LFGP D+L P R+FWKLD MESSSRMRRCLRRNY GSDH G+AA+Y
Sbjct: 1952 RKLIHQLIEMRSLFGPSADNLYSPLRVFWKLDLMESSSRMRRCLRRNYQGSDHLGSAADY 2011
Query: 1370 EDQIERKPGQENVINPSNAPIVAAEAISMEAVNEDDEQTENDNLDDRVYNLDNVGEDQTT 1429
E+ E K Q + PI++AEAIS+EAVNED+EQ + +NL DRV ++ N G++Q +
Sbjct: 2012 EEYSEEKKDQ-------STPILSAEAISLEAVNEDEEQVDAENLVDRVDDVQNKGDNQLS 2064
Query: 1430 VSEKIEQTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRV 1489
+SE EQ++QAS +SS A D+ + SS+A+ PGYVPSELDERIV ELP+SMVRPL+V
Sbjct: 2065 ISESAEQSVQASLESSSPQHASDEHIDQSSSAIAPGYVPSELDERIVLELPTSMVRPLKV 2124
Query: 1490 IRGTFQ---------------VTTRRINFIVDN----TESPEEG---TSELRNQEKDRSW 1527
IRGTFQ VT+RRINFIVDN T + +G + E NQEKDRSW
Sbjct: 2125 IRGTFQAFEAENDAQSMRTVYVTSRRINFIVDNNSNETSAATDGFHSSFEAGNQEKDRSW 2184
Query: 1528 LMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFG-----------STEGRRNAYRAIVQ 1576
LMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFG S EGRRNAYRAIVQ
Sbjct: 2185 LMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGEVKVHLDLGPFSIEGRRNAYRAIVQ 2244
Query: 1577 ARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVF 1636
ARPPHLN+IYLATQRP+QLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVF
Sbjct: 2245 ARPPHLNNIYLATQRPDQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVF 2304
Query: 1637 PWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYS 1696
PWILSDY+SE+LD++NPSS+RDLSKPVGALNPD+LK+FQERY+SFDDP+IPKFHYGSHYS
Sbjct: 2305 PWILSDYNSESLDISNPSSFRDLSKPVGALNPDRLKRFQERYASFDDPLIPKFHYGSHYS 2364
Query: 1697 SAGTV----LY-----YLFR---------------------------VEPFTTLSIQLQG 1720
SAGTV LY Y+ R VEPFTTL+IQLQG
Sbjct: 2365 SAGTVGLPLLYKHYTGYISRQCGTESTHFTPKIMKVLEAAMKETQMPVEPFTTLAIQLQG 2424
Query: 1721 GKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDS 1780
GKFDHADRMFSDI+ TWNGVLEDMSDVKELVPELFY PE+LTNENSIDFGTTQLGGKLD+
Sbjct: 2425 GKFDHADRMFSDISGTWNGVLEDMSDVKELVPELFYQPEVLTNENSIDFGTTQLGGKLDT 2484
Query: 1781 VGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYE 1840
V LP WAENP+DFIHKHR ALES+YVS+HLHEW+DLIFGYKQRGKEA++ANNVFFYITYE
Sbjct: 2485 VKLPAWAENPIDFIHKHRKALESEYVSSHLHEWIDLIFGYKQRGKEAVAANNVFFYITYE 2544
Query: 1841 GTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHL------------ 1888
GTVDIDKISDPVQQ A QDQIAYFGQTPSQLLTVPH+KKMPL +V+HL
Sbjct: 2545 GTVDIDKISDPVQQCATQDQIAYFGQTPSQLLTVPHLKKMPLAEVLHLQTSLPNIIQAQI 2604
Query: 1889 -------QTIFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVDMNAPAAHIARHNWQ 1941
QTIFRNP EVKPY VP PERCNLPAAAIHASSD VV+VDMNAPAAH+A+H WQ
Sbjct: 2605 LRFQMQTQTIFRNPNEVKPYVVPSPERCNLPAAAIHASSDAVVVVDMNAPAAHVAQHKWQ 2664
Query: 1942 PNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAV 2001
PNTPDG GTPFLFQH K +A A G +RMFK P SG +EW FP+A+AF++SGIRS A+
Sbjct: 2665 PNTPDGHGTPFLFQHRKVTAGSAGGALMRMFKAPVSSG-EEWRFPQAVAFSASGIRSQAI 2723
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
VSIT DKEIITGGH D SI+L++SDGAKTLETA GHCAPVTCL LS DSN+LVTGS+DTT
Sbjct: 2724 VSITCDKEIITGGHADNSIRLISSDGAKTLETAYGHCAPVTCLGLSPDSNYLVTGSRDTT 2783
Query: 2062 ILLWRIHRAFTSRTGTI-EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH 2120
ILLWRIHRA S + + E S+G GT + SS+ +K+RRRRIEGPI VLRGH
Sbjct: 2784 ILLWRIHRALVSHSNVVSEHSTGTGTLSPTSNSSSHL---IEKNRRRRIEGPIQVLRGHR 2840
Query: 2121 REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKL 2180
EI+ CCV+S+LG+VVSCS SSD+LLHSIRRGRLIRRL GV+AH V LSSEGV+MTWN+
Sbjct: 2841 SEIISCCVNSNLGIVVSCSHSSDVLLHSIRRGRLIRRLDGVEAHIVCLSSEGVVMTWNES 2900
Query: 2181 QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240
QH+LS+FTLNG +ARA+ SI CM+IS DG SALIG+NS NGS N Q LN
Sbjct: 2901 QHSLSTFTLNGTPIARAQFSFFCSISCMQISNDGMSALIGINSQ--ENGSSLNSQ-LN-- 2955
Query: 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTN 2300
+SG DFD S+++ +N+R D PSPSICFLD+HTL+VFH+L+LGEGQDITAL LN+DNTN
Sbjct: 2956 KSGV-DFDSESEETDENSRTDLPSPSICFLDMHTLEVFHILRLGEGQDITALTLNQDNTN 3014
Query: 2301 LLVSTADKQLIVFTDPALSLKVVDQMLKLGWEG 2333
LLVST DKQLI+FTDP+LSLKVVDQMLKLGWEG
Sbjct: 3015 LLVSTLDKQLIIFTDPSLSLKVVDQMLKLGWEG 3047
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828273|ref|XP_002882019.1| hypothetical protein ARALYDRAFT_483691 [Arabidopsis lyrata subsp. lyrata] gi|297327858|gb|EFH58278.1| hypothetical protein ARALYDRAFT_483691 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3199 bits (8293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1692/2341 (72%), Positives = 1929/2341 (82%), Gaps = 73/2341 (3%)
Query: 24 SSGMVRRPAEVLGQVHVATRMRPAEALWALAYGGPMSLLTLTVGNVHKESLEPQPGNFPL 83
++G +RRPAEVLGQVHVATRM+P E+ WALAYGGPMSLL LTV NVHK+SLEP GN PL
Sbjct: 642 AAGTLRRPAEVLGQVHVATRMKPVESFWALAYGGPMSLLPLTVSNVHKDSLEPCLGNLPL 701
Query: 84 SLATAALAAPIFRIISIAIQHPGNNEELIRTRGPEVLSRILNYLLKTLSSLGSGKHNGVG 143
SL+T LAAP+FRI+S+AIQHPGN EEL RT+GPE+L+RIL YLL +L+SL KH+GVG
Sbjct: 702 SLSTVTLAAPVFRIMSVAIQHPGNIEELCRTQGPEILARILRYLLHSLASLDR-KHDGVG 760
Query: 144 DEELVAAVVSLCQSQKSNHALKVQLFSTLLLDLRIWSLCSYGLQKKLLSSLADMVFTESS 203
+EELVAA+VSLCQSQK NH LKVQLF TLLLDL+IWSLC+YGLQKKLLSSL DMVFTE++
Sbjct: 761 EEELVAAIVSLCQSQKINHVLKVQLFRTLLLDLKIWSLCNYGLQKKLLSSLQDMVFTEAT 820
Query: 204 VMRDANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAMRPMGEVNALVDELLVIIELLIGA 263
MR+A AIQ+LLDGCRRCYW I EKDS TF LD R MGE+NAL+DELLVIIELL+GA
Sbjct: 821 AMRNAEAIQLLLDGCRRCYWMISEKDSETTFPLDRNTRQMGELNALIDELLVIIELLMGA 880
Query: 264 TPPSLAAEDVCRLLGFLVDCPQPNQVARVLHLIYRLVVQPNTARAQRFAETFLASGGIES 323
PSLAA+D+ RLLGF++D PQPNQVARVLHL+YRLVVQPN RAQ F+E F+ SGGIE+
Sbjct: 881 ASPSLAADDLRRLLGFIIDSPQPNQVARVLHLMYRLVVQPNATRAQMFSEVFITSGGIET 940
Query: 324 LLVLLQKEAKAGDHSVPVPVTKSDESPSVQGTE--PDSESANLER--------------- 366
LLVLLQ+EAK G+ +V + + KS S +E P +ES ++++
Sbjct: 941 LLVLLQREAKTGEDNV-LAMGKSGTRSSTDPSEKSPYNESGSVKQLDSNPHDNEIGFDLP 999
Query: 367 ------SEDDIVGSQKESDS--QEKDSESQPFNTDRGPVAISNTEKIERTSSVSENPFVK 418
EDD VGS E +S QEK+ S P D V+ISN+ ER S+VSE
Sbjct: 1000 GPDENSVEDDNVGSLNEPESVRQEKEHGSAPVVCDSDSVSISNSIDTERISAVSE----- 1054
Query: 419 DLGGISLSISADNARNNVYNIDKSDGIIVAIIELLGALISAGHLKVGSSTPSDVASNFPS 478
+GGISLSISAD+ARNNVYN+D SD ++V II L+GALIS+GHL SDV SN
Sbjct: 1055 -IGGISLSISADSARNNVYNVDNSDAVVVGIIRLIGALISSGHLTFDLDARSDVTSNILG 1113
Query: 479 IGLHERGGTMFDDKVSLLLFALQKAFQAAPNRLMTGNVYTALLGASMNTSAVATEDGLNF 538
GLHE GGTMFDDKV+LLLFAL KAFQAAPNRLMT NVYT LLGAS+N S+ TEDGLNF
Sbjct: 1114 SGLHENGGTMFDDKVALLLFALLKAFQAAPNRLMTDNVYTTLLGASINASS--TEDGLNF 1171
Query: 539 YDSRHRFEHSQLLLVLLHSIPYASRALQSRALQDLLILACSHPENRNSLTMMEEWPEWIL 598
YDS HRFEHSQLLLVLL S+P AS+ALQSRALQDLL LACSHPENR+SLT MEEWPEWIL
Sbjct: 1172 YDSGHRFEHSQLLLVLLRSLPSASKALQSRALQDLLFLACSHPENRSSLTAMEEWPEWIL 1231
Query: 599 EILISNYEMGASKQSSSPSLGDIEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSI 658
EILISNYE A KQS+S ++ED+IHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSI
Sbjct: 1232 EILISNYEKDAGKQSASVGSCEVEDMIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSI 1291
Query: 659 VGGSSTGEQRTRREESLPLFKRRLLGGLLDFATRELQVQTQVIAAAAAGVAAEGLPPKDA 718
VGGSSTGEQR RREESLP+FKRRL GGLLDFA RELQ QTQVIAAAAAGVAAEGL PKDA
Sbjct: 1292 VGGSSTGEQRIRREESLPIFKRRLFGGLLDFAARELQAQTQVIAAAAAGVAAEGLAPKDA 1351
Query: 719 KAEARNAAQLSVALVENAIVILMLVEDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSS 778
KA A NAAQLSV LVENAIVILMLVEDHLR QSK +CA+ ASPSPL N +S
Sbjct: 1352 KAGAENAAQLSVFLVENAIVILMLVEDHLRSQSKQTCATNAVAASPSPL------KNRTS 1405
Query: 779 LSASIG--AESLDSLGDRRSDSSGLPLDVLASMADANGQISAAVMERLTAAAAAEPYESV 836
+IG +E S + SDS +PLD+LASMAD++GQISA MERLTAA+AAEPYESV
Sbjct: 1406 TLTAIGESSEISRSRASQSSDSGKVPLDILASMADSSGQISAVAMERLTAASAAEPYESV 1465
Query: 837 SCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWI 896
SCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSK S +GGGGSG +SW S+LEKDA+GNWI
Sbjct: 1466 SCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSKPSLLGGGGSGSESWKSTLEKDAHGNWI 1525
Query: 897 ELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMAL 956
ELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGM ALYQLLDSDQPFLCMLRM L
Sbjct: 1526 ELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMTALYQLLDSDQPFLCMLRMVL 1585
Query: 957 LSMREEDNGEDSMFMRNVNMEDEMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSP 1016
LSMREED GED+M MRN + E+S G N ++D+ + +S R+ RSALLWSVLSP
Sbjct: 1586 LSMREEDYGEDNMLMRN--LSSELSSG------NSVTVDSGSQMSMRQSRSALLWSVLSP 1637
Query: 1017 VLNMPISDSKRQRVLVASCVLYSEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLA 1076
++NMPISDSKRQRVLV +CVLYSEVWH++SRDR+ LRKQY+EAI+PPFVAVLRRWRPLLA
Sbjct: 1638 IINMPISDSKRQRVLVTACVLYSEVWHAISRDRRPLRKQYIEAIIPPFVAVLRRWRPLLA 1697
Query: 1077 GIHELATADGLNPLILDDRALAADSLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAA 1136
GIHELATADG+NPL++DDRALAAD+LP+E A++MI+ WAAAFASPPAAMALAMIAAGAA
Sbjct: 1698 GIHELATADGMNPLVVDDRALAADALPVEGALSMITPEWAAAFASPPAAMALAMIAAGAA 1757
Query: 1137 GGDAPAPVATSQLRRDTSLLERKQTRLYTFSSFQKTSEVTNKSSPLPKDKASAKAAALAA 1196
G +AP P S LRRD+S+LERK +L TFSSFQK E N ++P +A AA A
Sbjct: 1758 GWEAPPPPTPSHLRRDSSMLERKTAKLQTFSSFQKPLEPPNNNAPPRPRDKAAAKAAALA 1817
Query: 1197 ARDL-ERNAKIGSGRGLSAVAMATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTK 1255
A ERNAKIGSGRGLSAVAMATSAQRRN D ER++RWN SEAMGVAWMECLQPVDTK
Sbjct: 1818 AARDLERNAKIGSGRGLSAVAMATSAQRRNIGDMERLQRWNTSEAMGVAWMECLQPVDTK 1877
Query: 1256 SVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHC 1315
SVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRR Q D+I+ +R C G RAWRKLI
Sbjct: 1878 SVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRRMQDDIIAANRLCLGSRAWRKLIRY 1937
Query: 1316 LIEMKCLFGPFEDHLSDPRRIFWKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIER 1375
L E++C FGPF D + P R+FWKLD MES SRMR+C+RRNY G+DH GAAANY+DQ +
Sbjct: 1938 LAEIQCFFGPFGDGICSPERVFWKLDSMESFSRMRQCIRRNYSGTDHHGAAANYDDQTDT 1997
Query: 1376 KPGQENVINPSNAPIVAAEAISMEAVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIE 1435
K + +PSN P++AAE ISME EDDE E D LD + N + D+ +S E
Sbjct: 1998 KSDNGSKGSPSNPPVLAAEVISMEIAYEDDEHGEGDQLDVK-SNAEEHRRDKGRISGSHE 2056
Query: 1436 QTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQ 1495
+ S +SD + D ++V S+ V PG+VPSELD+RI+ ELP+SMVRPLRV++GTFQ
Sbjct: 2057 HASRTSVGTSDPRTSNDLEMVRDSSVVAPGFVPSELDDRILLELPTSMVRPLRVVKGTFQ 2116
Query: 1496 VTTRRINFIVDNTESP----EEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFM 1551
+TTRRINFIVDN ES S+ +QEKDRSW MSSLHQIYSRRYLLRRSALELFM
Sbjct: 2117 ITTRRINFIVDNRESQNLADHSDESQSGDQEKDRSWPMSSLHQIYSRRYLLRRSALELFM 2176
Query: 1552 VDRSNFFFDFGSTEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEIS 1611
VDRSNFFFDFG+TEGRRNAYRAIVQARPPHLN+IYLATQRPEQLL+RTQLMERWARWEIS
Sbjct: 2177 VDRSNFFFDFGNTEGRRNAYRAIVQARPPHLNNIYLATQRPEQLLRRTQLMERWARWEIS 2236
Query: 1612 NFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQL 1671
NFEYLMQLNTLAGRSYNDITQYPVFPWI+SD SSE+LDL+NPS++RDLSKP+GALNP++L
Sbjct: 2237 NFEYLMQLNTLAGRSYNDITQYPVFPWIISDNSSESLDLSNPSTFRDLSKPIGALNPERL 2296
Query: 1672 KKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFS 1731
KKFQERYSSF+DPVIPKFHYGSHYSSAG VLYYL RVEPFTTLSIQLQGGKFDHADRMFS
Sbjct: 2297 KKFQERYSSFEDPVIPKFHYGSHYSSAGAVLYYLARVEPFTTLSIQLQGGKFDHADRMFS 2356
Query: 1732 DIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPV 1791
DI TWNGVLEDMSDVKELVPELFYLPE+LTNENSIDFGTTQLG KLD+V LPPWA+NPV
Sbjct: 2357 DIPGTWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQLGDKLDAVKLPPWAKNPV 2416
Query: 1792 DFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDP 1851
DF+HK R ALES++VSAHLHEW+DLIFGYKQRGKEAI ANNVFFYITYEGTVDIDKI+DP
Sbjct: 2417 DFVHKQRRALESEHVSAHLHEWIDLIFGYKQRGKEAIMANNVFFYITYEGTVDIDKITDP 2476
Query: 1852 VQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNL 1911
VQQRA QDQIAYFGQTPSQLLTVPH+K+MPL DV+H+QTIFRNPKE+KPYAV PERCNL
Sbjct: 2477 VQQRATQDQIAYFGQTPSQLLTVPHIKRMPLKDVLHMQTIFRNPKEIKPYAVQTPERCNL 2536
Query: 1912 PAAAIHASSDTVVIVDMNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRM 1971
PA+AI ASSD+VVIVDMN PAA +A+H WQPNTPDGQGTPFLF HGKA+ + SG+ +RM
Sbjct: 2537 PASAIQASSDSVVIVDMNVPAARVAQHKWQPNTPDGQGTPFLFHHGKATTTSTSGSLMRM 2596
Query: 1972 FKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031
FKGP SG +W FP+A AFASSGIRSS+VV+IT D EIITGGH D SIKL++SDGAKTL
Sbjct: 2597 FKGPASSGTGDWQFPQAQAFASSGIRSSSVVAITSDGEIITGGHADNSIKLVSSDGAKTL 2656
Query: 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI 2091
ETA GHCAPVTCLALS D+NFLVTGS+D+T+LLWRIH+AFT+RT EPS+G G P +S
Sbjct: 2657 ETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIHKAFTTRTSVSEPSTGSGAP-SST 2715
Query: 2092 GSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151
++ AN A+K ++ R+EGPI VLRGH REI+CCCVSSD GVVVS S+SSD+LLHSIR+
Sbjct: 2716 SNTNLANTLANKGKKCRLEGPIQVLRGHRREIICCCVSSDQGVVVSSSESSDVLLHSIRK 2775
Query: 2152 GRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS 2211
GRLIRRLVGV A ++ +SS+GVIM W+ + +++ FT+NGVL+A+AKLP SIGCMEIS
Sbjct: 2776 GRLIRRLVGVKADSLCISSDGVIMAWSSSEGSITVFTINGVLIAKAKLPFFCSIGCMEIS 2835
Query: 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271
+DG +ALIG+NS ++++ S N + K D R + PSPSICFL+
Sbjct: 2836 MDGQNALIGMNSCASSDYSSSNDTSKDGK---------------DIERLEVPSPSICFLN 2880
Query: 2272 LHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGW 2331
L+TL+VFHVLKLG+GQDITALALN DNTNLLVST DKQLI+FTDPA+SLKVVDQMLKLGW
Sbjct: 2881 LYTLQVFHVLKLGQGQDITALALNVDNTNLLVSTEDKQLIIFTDPAVSLKVVDQMLKLGW 2940
Query: 2332 E 2332
E
Sbjct: 2941 E 2941
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225507|ref|NP_182078.1| beige-related and WD-40 repeat-containing protein [Arabidopsis thaliana] gi|2979554|gb|AAC06163.1| unknown protein [Arabidopsis thaliana] gi|330255473|gb|AEC10567.1| beige-related and WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3195 bits (8284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1689/2341 (72%), Positives = 1925/2341 (82%), Gaps = 76/2341 (3%)
Query: 24 SSGMVRRPAEVLGQVHVATRMRPAEALWALAYGGPMSLLTLTVGNVHKESLEPQPGNFPL 83
++G +RRPAEVLGQVHVATRM+P E+ WALAYGGPMSLL LTV +VHK+SLEP GN PL
Sbjct: 650 AAGTLRRPAEVLGQVHVATRMKPVESFWALAYGGPMSLLPLTVSSVHKDSLEPCLGNLPL 709
Query: 84 SLATAALAAPIFRIISIAIQHPGNNEELIRTRGPEVLSRILNYLLKTLSSLGSGKHNGVG 143
SL+T LAAP+FRI+S+AIQHPGNNEEL RT+GPE+L+RIL+YLL +L+SL KH+GVG
Sbjct: 710 SLSTVTLAAPVFRIMSVAIQHPGNNEELCRTQGPEILARILSYLLHSLASLDR-KHDGVG 768
Query: 144 DEELVAAVVSLCQSQKSNHALKVQLFSTLLLDLRIWSLCSYGLQKKLLSSLADMVFTESS 203
+EELVAA+VSLCQSQK NH LKVQLF TLLLDL+IWSLC+YGLQKKLLSSL DMVFTE++
Sbjct: 769 EEELVAAIVSLCQSQKINHVLKVQLFRTLLLDLKIWSLCNYGLQKKLLSSLQDMVFTEAT 828
Query: 204 VMRDANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAMRPMGEVNALVDELLVIIELLIGA 263
MRDA AIQ+LLDGCRRCYW I EKDS TF LD R MGE+NAL+DELLVIIELL+GA
Sbjct: 829 AMRDAEAIQLLLDGCRRCYWMISEKDSETTFPLDGNTRQMGELNALIDELLVIIELLMGA 888
Query: 264 TPPSLAAEDVCRLLGFLVDCPQPNQVARVLHLIYRLVVQPNTARAQRFAETFLASGGIES 323
PSLAA+D+ RLLGF++D PQPNQVARVLHL+YRLVVQPN ARAQ FAE F+ SGGIE+
Sbjct: 889 ASPSLAADDLRRLLGFIIDSPQPNQVARVLHLMYRLVVQPNAARAQMFAEVFITSGGIET 948
Query: 324 LLVLLQKEAKAGDHSVPVPVTKSDESPSVQGTE--PDSESANLER--------------- 366
LLVLLQ+EAK G+ +V + + +S + S +E P +ES ++++
Sbjct: 949 LLVLLQREAKTGEDNV-LAMGRSGKRSSTDPSEKSPYNESGSVKQLDSNPHDNEIGFDLP 1007
Query: 367 ------SEDDIVGSQK--ESDSQEKDSESQPFNTDRGPVAISNTEKIERTSSVSENPFVK 418
EDD VGS ES QEK+ S P D V+ISN+ ER S+
Sbjct: 1008 GPDGNSVEDDNVGSLNVPESVRQEKEHGSTPVVCDSDSVSISNSINTERLSA-------- 1059
Query: 419 DLGGISLSISADNARNNVYNIDKSDGIIVAIIELLGALISAGHLKVGSSTPSDVASNFPS 478
++GGISLSISAD+ARNNVYN+D SD ++V II L+GALIS+GHL SDV SN
Sbjct: 1060 EIGGISLSISADSARNNVYNVDNSDAVVVGIIRLIGALISSGHLTFDFDARSDVTSNILG 1119
Query: 479 IGLHERGGTMFDDKVSLLLFALQKAFQAAPNRLMTGNVYTALLGASMNTSAVATEDGLNF 538
GLHE GGTMFDDKV+LLLFAL KAFQAAPNRLMT NVYT LLGAS+N S+ TEDGLNF
Sbjct: 1120 SGLHENGGTMFDDKVALLLFALLKAFQAAPNRLMTDNVYTTLLGASINASS--TEDGLNF 1177
Query: 539 YDSRHRFEHSQLLLVLLHSIPYASRALQSRALQDLLILACSHPENRNSLTMMEEWPEWIL 598
YDS HRFEHSQLLLVLL S+P AS+ALQSRALQDLL LACSHPENR+SLT MEEWPEWIL
Sbjct: 1178 YDSGHRFEHSQLLLVLLRSLPSASKALQSRALQDLLFLACSHPENRSSLTTMEEWPEWIL 1237
Query: 599 EILISNYEMGASKQSSSPSLGDIEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSI 658
EILISNYE A KQS+S ++ED+IHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSI
Sbjct: 1238 EILISNYEKDAGKQSASVGSCEVEDMIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSI 1297
Query: 659 VGGSSTGEQRTRREESLPLFKRRLLGGLLDFATRELQVQTQVIAAAAAGVAAEGLPPKDA 718
VGGSSTGEQR RREESLP+FKRRL GGLLDFA RELQ QTQVIAAAAAGVAAEGL PKDA
Sbjct: 1298 VGGSSTGEQRIRREESLPIFKRRLFGGLLDFAARELQAQTQVIAAAAAGVAAEGLAPKDA 1357
Query: 719 KAEARNAAQLSVALVENAIVILMLVEDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSS 778
KA A NAAQLSV LVENAIVILMLVEDHLR QSK +CA+ +A SP SPL +S
Sbjct: 1358 KAGAENAAQLSVFLVENAIVILMLVEDHLRSQSKQTCAT---NAVASP----SPLKKRTS 1410
Query: 779 LSASIG--AESLDSLGDRRSDSSGLPLDVLASMADANGQISAAVMERLTAAAAAEPYESV 836
+IG +E S SDS +PLD+LASMAD++GQISA MERLTAA+AAEPYESV
Sbjct: 1411 TLTAIGESSEISSSRASLSSDSGKVPLDILASMADSSGQISAVAMERLTAASAAEPYESV 1470
Query: 837 SCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWI 896
SCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSK S +GGGGSG DSW S+LEKDA+GNWI
Sbjct: 1471 SCAFVSYGSCAMDLAEGWKYRSRLWYGVGLPSKPSSLGGGGSGSDSWKSTLEKDAHGNWI 1530
Query: 897 ELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMAL 956
ELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGM ALYQLLDSDQPFLCMLRM L
Sbjct: 1531 ELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMTALYQLLDSDQPFLCMLRMVL 1590
Query: 957 LSMREEDNGEDSMFMRNVNMEDEMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSP 1016
LSMREED GED+M MRN++ E R + N +LD+ + +S R+ RSALLWSVLSP
Sbjct: 1591 LSMREEDYGEDNMLMRNLSSE--------RSSGNSVTLDSGSQMSMRQSRSALLWSVLSP 1642
Query: 1017 VLNMPISDSKRQRVLVASCVLYSEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLA 1076
++NMPISDSKRQRVLV +CVLYSEVWH++SRDR+ LRKQY+EAI+PPF+AVLRRWRPLLA
Sbjct: 1643 IINMPISDSKRQRVLVTACVLYSEVWHAISRDRRPLRKQYIEAIVPPFIAVLRRWRPLLA 1702
Query: 1077 GIHELATADGLNPLILDDRALAADSLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAA 1136
GIHELATADG+NPL++DDRALAAD+LP+E A++M++ WAAAFASPPAAM+LAMIAAGAA
Sbjct: 1703 GIHELATADGMNPLVVDDRALAADALPVEGALSMVTPEWAAAFASPPAAMSLAMIAAGAA 1762
Query: 1137 GGDAPAPVATSQLRRDTSLLERKQTRLYTFSSFQKTSEVTNKSSPLPKDKASAKAAALAA 1196
G +AP P S LRRD+S+LERK +L TFSSFQK E N ++P +A AA A
Sbjct: 1763 GWEAPPPPTPSHLRRDSSMLERKTAKLQTFSSFQKPLEPPNNNAPPRPRDKAAAKAAALA 1822
Query: 1197 ARDL-ERNAKIGSGRGLSAVAMATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTK 1255
A ERNAKIGSGRGLSAVAMATSAQRRN D ER++RWN SEAMGVAWMECLQPVDTK
Sbjct: 1823 AARDLERNAKIGSGRGLSAVAMATSAQRRNIGDMERLQRWNTSEAMGVAWMECLQPVDTK 1882
Query: 1256 SVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHC 1315
SVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRR Q D+I+ +R C G RAWRKLI
Sbjct: 1883 SVYGKDFNALSYKFIAVLVASFALARNMQRSEIDRRMQDDIIAANRLCLGSRAWRKLIRY 1942
Query: 1316 LIEMKCLFGPFEDHLSDPRRIFWKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIER 1375
L EM+C FGPF D + P R+FWKLD MES SRMR+ +RRNY G+DH GAAA+Y+DQ E
Sbjct: 1943 LAEMRCFFGPFGDGICSPERVFWKLDSMESFSRMRQSIRRNYSGTDHHGAAADYDDQTET 2002
Query: 1376 KPGQENVINPSNAPIVAAEAISMEAVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIE 1435
K + + SN P+VAAE I ME E+DE E D LD + N + D+ +S E
Sbjct: 2003 KSDNGSKGSQSNPPVVAAEVILMEIAYEEDEHGEGDQLDVK-GNAEEHKRDEGRISGSHE 2061
Query: 1436 QTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQ 1495
+ SA +SD + D ++V S+ V PG+VPSELDERI+ ELP+SMVRPLRV++GTFQ
Sbjct: 2062 HASRTSAGNSDPRTSNDLEMVRDSSVVAPGFVPSELDERILLELPTSMVRPLRVVKGTFQ 2121
Query: 1496 VTTRRINFIVDNTESP----EEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFM 1551
+TTRRINFIVDN ES S+ +QEKDRSW MSSLHQIYSRRYLLRRSALELFM
Sbjct: 2122 ITTRRINFIVDNRESQNLADHSDESQSGDQEKDRSWPMSSLHQIYSRRYLLRRSALELFM 2181
Query: 1552 VDRSNFFFDFGSTEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEIS 1611
VDRSNFFFDFG+TEGRRNAYRAIVQARPPHLN+IYLATQRPEQLL+RTQLMERWARWEIS
Sbjct: 2182 VDRSNFFFDFGNTEGRRNAYRAIVQARPPHLNNIYLATQRPEQLLRRTQLMERWARWEIS 2241
Query: 1612 NFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQL 1671
NFEYLMQLNTLAGRSYNDITQYPVFPWI+SD SSE+LDL+NPS++RDLSKP+GALNP++L
Sbjct: 2242 NFEYLMQLNTLAGRSYNDITQYPVFPWIISDNSSESLDLSNPSTFRDLSKPIGALNPERL 2301
Query: 1672 KKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFS 1731
KKFQERYSSF+DPVIPKFHYGSHYSSAG VLYYL RVEPFTTLSIQLQGGKFDHADRMFS
Sbjct: 2302 KKFQERYSSFEDPVIPKFHYGSHYSSAGAVLYYLARVEPFTTLSIQLQGGKFDHADRMFS 2361
Query: 1732 DIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPV 1791
D TWNGVLEDMSDVKELVPELFYLPE+LTNENSIDFGTTQLG KLD+V LPPWA+NPV
Sbjct: 2362 DFPGTWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQLGEKLDAVKLPPWAKNPV 2421
Query: 1792 DFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDP 1851
DF+HK R ALES++VSAHLHEW+DLIFGYKQRGKEAI ANNVFFYITYEGTVDIDKI+DP
Sbjct: 2422 DFVHKQRRALESEHVSAHLHEWIDLIFGYKQRGKEAIMANNVFFYITYEGTVDIDKITDP 2481
Query: 1852 VQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNL 1911
VQQRA QDQIAYFGQTPSQLLTVPHMK+MPL DV+H+QTIFRNPKE+KPY V PERCNL
Sbjct: 2482 VQQRATQDQIAYFGQTPSQLLTVPHMKRMPLKDVLHMQTIFRNPKEIKPYTVQTPERCNL 2541
Query: 1912 PAAAIHASSDTVVIVDMNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRM 1971
PA+AI ASSD+VVIVDMN PAA +A+H WQPNTPDGQGTPFLF HGKA+ + SG+ +RM
Sbjct: 2542 PASAIQASSDSVVIVDMNVPAARVAQHKWQPNTPDGQGTPFLFHHGKATTTSTSGSLMRM 2601
Query: 1972 FKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031
FKGP SG +W FP+A AFASSGIRSS+V++IT D EIITGGH D SIKL++SDGAKTL
Sbjct: 2602 FKGPASSGTGDWQFPQAQAFASSGIRSSSVIAITSDGEIITGGHADNSIKLVSSDGAKTL 2661
Query: 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI 2091
ETA GHCAPVTCLALS D+NFLVTGS+D+T+LLWRIH+AFTSRT EPS+G G P +S
Sbjct: 2662 ETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSGAP-SST 2720
Query: 2092 GSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151
++ AN A+K ++ R+EGPI VLRGH RE++CCCVSSD GVVVS S+SSD+LLHSIR+
Sbjct: 2721 SNTNLANTLANKGKKCRLEGPIQVLRGHRRELVCCCVSSDQGVVVSSSESSDVLLHSIRK 2780
Query: 2152 GRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS 2211
GRLIRRLVGV A ++ +SS+GVIM W+ + ++S FT+NGVL+A+AK PL S+GCMEIS
Sbjct: 2781 GRLIRRLVGVKADSLCISSDGVIMAWSSSEGSISVFTINGVLIAKAKFPLFCSVGCMEIS 2840
Query: 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271
+DG +ALIG+NS S ++ S N +SK+ R D PSPSICFL+
Sbjct: 2841 MDGQNALIGMNSCSNSDYSSSNDTSKDSKEI---------------ERLDVPSPSICFLN 2885
Query: 2272 LHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGW 2331
L+TL+VFHVLKLG+GQDITALALN DNTNLLVST DKQLI+FTDPALSLKVVDQMLKLGW
Sbjct: 2886 LYTLQVFHVLKLGQGQDITALALNVDNTNLLVSTEDKQLIIFTDPALSLKVVDQMLKLGW 2945
Query: 2332 E 2332
E
Sbjct: 2946 E 2946
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184925|ref|NP_001189752.1| beige-related and WD-40 repeat-containing protein [Arabidopsis thaliana] gi|330255474|gb|AEC10568.1| beige-related and WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3151 bits (8169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1682/2396 (70%), Positives = 1923/2396 (80%), Gaps = 131/2396 (5%)
Query: 24 SSGMVRRPAEVLGQVHVATRMRPAEALWALAYGGPMSLLTLTVGNVHKESLEPQPGNFPL 83
++G +RRPAEVLGQVHVATRM+P E+ WALAYGGPMSLL LTV +VHK+SLEP GN PL
Sbjct: 650 AAGTLRRPAEVLGQVHVATRMKPVESFWALAYGGPMSLLPLTVSSVHKDSLEPCLGNLPL 709
Query: 84 SLATAALAAPIFRIISIAIQHPGNNEELIRTRGPEVLSRILNYLLKTLSSLGSGKHNGVG 143
SL+T LAAP+FRI+S+AIQHPGNNEEL RT+GPE+L+RIL+YLL +L+SL KH+GVG
Sbjct: 710 SLSTVTLAAPVFRIMSVAIQHPGNNEELCRTQGPEILARILSYLLHSLASLDR-KHDGVG 768
Query: 144 DEELVAAVVSLCQSQKSNHALKVQLFSTLLLDLRIWSLCSYGLQKKLLSSLADMVFTESS 203
+EELVAA+VSLCQSQK NH LKVQLF TLLLDL+IWSLC+YGLQKKLLSSL DMVFTE++
Sbjct: 769 EEELVAAIVSLCQSQKINHVLKVQLFRTLLLDLKIWSLCNYGLQKKLLSSLQDMVFTEAT 828
Query: 204 VMRDANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAMRPMGEVNALVDELLVIIELLIGA 263
MRDA AIQ+LLDGCRRCYW I EKDS TF LD R MGE+NAL+DELLVIIELL+GA
Sbjct: 829 AMRDAEAIQLLLDGCRRCYWMISEKDSETTFPLDGNTRQMGELNALIDELLVIIELLMGA 888
Query: 264 TPPSLAAEDVCRLLGFLVDCPQPNQV---------------------------ARVLHLI 296
PSLAA+D+ RLLGF++D PQPNQV ++++++
Sbjct: 889 ASPSLAADDLRRLLGFIIDSPQPNQVHCKFNANASAVCSLLALLLIKLVPLFRSQIMYMN 948
Query: 297 YR----------------------------LVVQPNTARAQRFAETFLASGGIESLLVLL 328
R LVVQPN ARAQ FAE F+ SGGIE+LLVLL
Sbjct: 949 SRKPSYNGLHGEMWVISRENGLTDCTRLCWLVVQPNAARAQMFAEVFITSGGIETLLVLL 1008
Query: 329 QKEAKAGDHSVPVPVTKSDESPSVQGTE--PDSESANLER-------------------- 366
Q+EAK G+ +V + + +S + S +E P +ES ++++
Sbjct: 1009 QREAKTGEDNV-LAMGRSGKRSSTDPSEKSPYNESGSVKQLDSNPHDNEIGFDLPGPDGN 1067
Query: 367 -SEDDIVGSQK--ESDSQEKDSESQPFNTDRGPVAISNTEKIERTSSVSENPFVKDLGGI 423
EDD VGS ES QEK+ S P D V+ISN+ ER S+ ++GGI
Sbjct: 1068 SVEDDNVGSLNVPESVRQEKEHGSTPVVCDSDSVSISNSINTERLSA--------EIGGI 1119
Query: 424 SLSISADNARNNVYNIDKSDGIIVAIIELLGALISAGHLKVGSSTPSDVASNFPSIGLHE 483
SLSISAD+ARNNVYN+D SD ++V II L+GALIS+GHL SDV SN GLHE
Sbjct: 1120 SLSISADSARNNVYNVDNSDAVVVGIIRLIGALISSGHLTFDFDARSDVTSNILGSGLHE 1179
Query: 484 RGGTMFDDKVSLLLFALQKAFQAAPNRLMTGNVYTALLGASMNTSAVATEDGLNFYDSRH 543
GGTMFDDKV+LLLFAL KAFQAAPNRLMT NVYT LLGAS+N S+ TEDGLNFYDS H
Sbjct: 1180 NGGTMFDDKVALLLFALLKAFQAAPNRLMTDNVYTTLLGASINASS--TEDGLNFYDSGH 1237
Query: 544 RFEHSQLLLVLLHSIPYASRALQSRALQDLLILACSHPENRNSLTMMEEWPEWILEILIS 603
RFEHSQLLLVLL S+P AS+ALQSRALQDLL LACSHPENR+SLT MEEWPEWILEILIS
Sbjct: 1238 RFEHSQLLLVLLRSLPSASKALQSRALQDLLFLACSHPENRSSLTTMEEWPEWILEILIS 1297
Query: 604 NYEMGASKQSSSPSLGDIEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSS 663
NYE A KQS+S ++ED+IHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSS
Sbjct: 1298 NYEKDAGKQSASVGSCEVEDMIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSS 1357
Query: 664 TGEQRTRREESLPLFKRRLLGGLLDFATRELQVQTQVIAAAAAGVAAEGLPPKDAKAEAR 723
TGEQR RREESLP+FKRRL GGLLDFA RELQ QTQVIAAAAAGVAAEGL PKDAKA A
Sbjct: 1358 TGEQRIRREESLPIFKRRLFGGLLDFAARELQAQTQVIAAAAAGVAAEGLAPKDAKAGAE 1417
Query: 724 NAAQLSVALVENAIVILMLVEDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSSLSASI 783
NAAQLSV LVENAIVILMLVEDHLR QSK +CA+ +A SP SPL +S +I
Sbjct: 1418 NAAQLSVFLVENAIVILMLVEDHLRSQSKQTCAT---NAVASP----SPLKKRTSTLTAI 1470
Query: 784 G--AESLDSLGDRRSDSSGLPLDVLASMADANGQISAAVMERLTAAAAAEPYESVSCAFV 841
G +E S SDS +PLD+LASMAD++GQISA MERLTAA+AAEPYESVSCAFV
Sbjct: 1471 GESSEISSSRASLSSDSGKVPLDILASMADSSGQISAVAMERLTAASAAEPYESVSCAFV 1530
Query: 842 SYGSCAMDLAEGWKYRSRLWYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLV 901
SYGSCAMDLAEGWKYRSRLWYGVGLPSK S +GGGGSG DSW S+LEKDA+GNWIELPLV
Sbjct: 1531 SYGSCAMDLAEGWKYRSRLWYGVGLPSKPSSLGGGGSGSDSWKSTLEKDAHGNWIELPLV 1590
Query: 902 KKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMALLSMRE 961
KKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGM ALYQLLDSDQPFLCMLRM LLSMRE
Sbjct: 1591 KKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMTALYQLLDSDQPFLCMLRMVLLSMRE 1650
Query: 962 EDNGEDSMFMRNVNMEDEMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMP 1021
ED GED+M MRN++ E R + N +LD+ + +S R+ RSALLWSVLSP++NMP
Sbjct: 1651 EDYGEDNMLMRNLSSE--------RSSGNSVTLDSGSQMSMRQSRSALLWSVLSPIINMP 1702
Query: 1022 ISDSKRQRVLVASCVLYSEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHEL 1081
ISDSKRQRVLV +CVLYSEVWH++SRDR+ LRKQY+EAI+PPF+AVLRRWRPLLAGIHEL
Sbjct: 1703 ISDSKRQRVLVTACVLYSEVWHAISRDRRPLRKQYIEAIVPPFIAVLRRWRPLLAGIHEL 1762
Query: 1082 ATADGLNPLILDDRALAADSLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGDAP 1141
ATADG+NPL++DDRALAAD+LP+E A++M++ WAAAFASPPAAM+LAMIAAGAAG +AP
Sbjct: 1763 ATADGMNPLVVDDRALAADALPVEGALSMVTPEWAAAFASPPAAMSLAMIAAGAAGWEAP 1822
Query: 1142 APVATSQLRRDTSLLERKQTRLYTFSSFQKTSEVTNKSSPLPKDKASAKAAALAAARDL- 1200
P S LRRD+S+LERK +L TFSSFQK E N ++P +A AA AA
Sbjct: 1823 PPPTPSHLRRDSSMLERKTAKLQTFSSFQKPLEPPNNNAPPRPRDKAAAKAAALAAARDL 1882
Query: 1201 ERNAKIGSGRGLSAVAMATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGK 1260
ERNAKIGSGRGLSAVAMATSAQRRN D ER++RWN SEAMGVAWMECLQPVDTKSVYGK
Sbjct: 1883 ERNAKIGSGRGLSAVAMATSAQRRNIGDMERLQRWNTSEAMGVAWMECLQPVDTKSVYGK 1942
Query: 1261 DFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMK 1320
DFNALSYKFIAVLVASFALARNMQRSEIDRR Q D+I+ +R C G RAWRKLI L EM+
Sbjct: 1943 DFNALSYKFIAVLVASFALARNMQRSEIDRRMQDDIIAANRLCLGSRAWRKLIRYLAEMR 2002
Query: 1321 CLFGPFEDHLSDPRRIFWKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQE 1380
C FGPF D + P R+FWKLD MES SRMR+ +RRNY G+DH GAAA+Y+DQ E K
Sbjct: 2003 CFFGPFGDGICSPERVFWKLDSMESFSRMRQSIRRNYSGTDHHGAAADYDDQTETKSDNG 2062
Query: 1381 NVINPSNAPIVAAEAISMEAVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIEQTLQA 1440
+ + SN P+VAAE I ME E+DE E D LD + N + D+ +S E +
Sbjct: 2063 SKGSQSNPPVVAAEVILMEIAYEEDEHGEGDQLDVK-GNAEEHKRDEGRISGSHEHASRT 2121
Query: 1441 SADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRR 1500
SA +SD + D ++V S+ V PG+VPSELDERI+ ELP+SMVRPLRV++GTFQ+TTRR
Sbjct: 2122 SAGNSDPRTSNDLEMVRDSSVVAPGFVPSELDERILLELPTSMVRPLRVVKGTFQITTRR 2181
Query: 1501 INFIVDNTESP----EEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSN 1556
INFIVDN ES S+ +QEKDRSW MSSLHQIYSRRYLLRRSALELFMVDRSN
Sbjct: 2182 INFIVDNRESQNLADHSDESQSGDQEKDRSWPMSSLHQIYSRRYLLRRSALELFMVDRSN 2241
Query: 1557 FFFDFGSTEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYL 1616
FFFDFG+TEGRRNAYRAIVQARPPHLN+IYLATQRPEQLL+RTQLMERWARWEISNFEYL
Sbjct: 2242 FFFDFGNTEGRRNAYRAIVQARPPHLNNIYLATQRPEQLLRRTQLMERWARWEISNFEYL 2301
Query: 1617 MQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQE 1676
MQLNTLAGRSYNDITQYPVFPWI+SD SSE+LDL+NPS++RDLSKP+GALNP++LKKFQE
Sbjct: 2302 MQLNTLAGRSYNDITQYPVFPWIISDNSSESLDLSNPSTFRDLSKPIGALNPERLKKFQE 2361
Query: 1677 RYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAAT 1736
RYSSF+DPVIPKFHYGSHYSSAG VLYYL RVEPFTTLSIQLQGGKFDHADRMFSD T
Sbjct: 2362 RYSSFEDPVIPKFHYGSHYSSAGAVLYYLARVEPFTTLSIQLQGGKFDHADRMFSDFPGT 2421
Query: 1737 WNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHK 1796
WNGVLEDMSDVKELVPELFYLPE+LTNENSIDFGTTQLG KLD+V LPPWA+NPVDF+HK
Sbjct: 2422 WNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQLGEKLDAVKLPPWAKNPVDFVHK 2481
Query: 1797 HRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRA 1856
R ALES++VSAHLHEW+DLIFGYKQRGKEAI ANNVFFYITYEGTVDIDKI+DPVQQRA
Sbjct: 2482 QRRALESEHVSAHLHEWIDLIFGYKQRGKEAIMANNVFFYITYEGTVDIDKITDPVQQRA 2541
Query: 1857 AQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAAAI 1916
QDQIAYFGQTPSQLLTVPHMK+MPL DV+H+QTIFRNPKE+KPY V PERCNLPA+AI
Sbjct: 2542 TQDQIAYFGQTPSQLLTVPHMKRMPLKDVLHMQTIFRNPKEIKPYTVQTPERCNLPASAI 2601
Query: 1917 HASSDTVVIVDMNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPG 1976
ASSD+VVIVDMN PAA +A+H WQPNTPDGQGTPFLF HGKA+ + SG+ +RMFKGP
Sbjct: 2602 QASSDSVVIVDMNVPAARVAQHKWQPNTPDGQGTPFLFHHGKATTTSTSGSLMRMFKGPA 2661
Query: 1977 GSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036
SG +W FP+A AFASSGIRSS+V++IT D EIITGGH D SIKL++SDGAKTLETA G
Sbjct: 2662 SSGTGDWQFPQAQAFASSGIRSSSVIAITSDGEIITGGHADNSIKLVSSDGAKTLETAFG 2721
Query: 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTP 2096
HCAPVTCLALS D+NFLVTGS+D+T+LLWRIH+AFTSRT EPS+G G P +S ++
Sbjct: 2722 HCAPVTCLALSPDNNFLVTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSGAP-SSTSNTNL 2780
Query: 2097 ANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156
AN A+K ++ R+EGPI VLRGH RE++CCCVSSD GVVVS S+SSD+LLHSIR+GRLIR
Sbjct: 2781 ANTLANKGKKCRLEGPIQVLRGHRRELVCCCVSSDQGVVVSSSESSDVLLHSIRKGRLIR 2840
Query: 2157 RLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHS 2216
RLVGV A ++ +SS+GVIM W+ + ++S FT+NGVL+A+AK PL S+GCMEIS+DG +
Sbjct: 2841 RLVGVKADSLCISSDGVIMAWSSSEGSISVFTINGVLIAKAKFPLFCSVGCMEISMDGQN 2900
Query: 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK 2276
ALIG+NS S ++ S N +SK+ R D PSPSICFL+L+TL+
Sbjct: 2901 ALIGMNSCSNSDYSSSNDTSKDSKEI---------------ERLDVPSPSICFLNLYTLQ 2945
Query: 2277 VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWE 2332
VFHVLKLG+GQDITALALN DNTNLLVST DKQLI+FTDPALSLKVVDQMLKLGWE
Sbjct: 2946 VFHVLKLGQGQDITALALNVDNTNLLVSTEDKQLIIFTDPALSLKVVDQMLKLGWE 3001
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480357|ref|XP_004155870.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229803 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2985 bits (7739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1566/2085 (75%), Positives = 1767/2085 (84%), Gaps = 53/2085 (2%)
Query: 283 CPQPNQVARVLHLIYRLVVQPNTARAQRFAETFLASGGIESLLVLLQKEAKAGDHSVPVP 342
C +VARVLHL+YRLVVQPNT+RAQ FAE F+A GGIE+LLVLLQ+E KAGD S P
Sbjct: 26 CLLLKEVARVLHLVYRLVVQPNTSRAQTFAEAFIACGGIETLLVLLQREVKAGDVSDPEV 85
Query: 343 VTKSDESPSVQGTEPDSESANLERSEDDIVGSQKESDSQEKDSESQPFNTDRGPV----A 398
+T + E+ + DS ER D +G+ +E + + Q +T+ G V A
Sbjct: 86 IT-TPETSFFHESGVDSGDGVPERILDGDIGAVEEEKLNVPEKDWQFESTEIGGVRHFGA 144
Query: 399 ISNTEKIERTSSVSENPFVKDLGGISLSISADNARNNVYNIDKSDGIIVAIIELLGALIS 458
S +IER S+SE+ FVK+LGGISLSI+ADNARNNVYN+DK DGI+V II L+GAL++
Sbjct: 145 ASPGVRIERMLSISESSFVKNLGGISLSITADNARNNVYNVDKRDGIVVGIIGLVGALVA 204
Query: 459 AGHLKVGSSTPSDVASNFPSIGLHERGGTMFDDKVSLLLFALQKAFQAAPNRLMTGNVYT 518
+GHLK S +PSD +N GL + G +MFDDKVSLLL+ALQKAFQAAPN+LMT NVYT
Sbjct: 205 SGHLKFDSFSPSDATTNILGSGLPDGGSSMFDDKVSLLLYALQKAFQAAPNKLMTNNVYT 264
Query: 519 ALLGASMNTSAVATEDGLNFYDSRHRFEHSQLLLVLLHSIPYASRALQSRALQDLLILAC 578
AL+GAS+N S+ TEDGLNFYDS HRFEH QLLLVLL S+PYASRA QSRALQDLL LAC
Sbjct: 265 ALMGASINASS--TEDGLNFYDSGHRFEHLQLLLVLLRSLPYASRAFQSRALQDLLFLAC 322
Query: 579 SHPENRNSLTMMEEWPEWILEILISNYEMGASKQSSSPSLGDIEDLIHNFLIIMLEHSMR 638
SHPENRNSLT MEEWPEWILEILISN+E+G SK S + S+GD+EDLIHNFLIIMLEHSMR
Sbjct: 323 SHPENRNSLTKMEEWPEWILEILISNHELGESKNSQTTSVGDVEDLIHNFLIIMLEHSMR 382
Query: 639 QKDGWKDIEATIHCAEWLSIVGGSSTGEQRTRREESLPLFKRRLLGGLLDFATRELQVQT 698
QKDGWKDIEATIHCAEWLSIVGGSSTG+QR RREESLP+FKRRLLGGLLDF+ RELQ QT
Sbjct: 383 QKDGWKDIEATIHCAEWLSIVGGSSTGDQRVRREESLPIFKRRLLGGLLDFSGRELQAQT 442
Query: 699 QVIAAAAAGVAAEGLPPKDAKAEARNAAQLSVALVENAIVILMLVEDHLRLQSKLSCASR 758
QVIAAAAAGVAAEGL P DAKAEA NAAQLSV+LVENAIVILMLVEDHLRLQSKLSCAS
Sbjct: 443 QVIAAAAAGVAAEGLSPTDAKAEAENAAQLSVSLVENAIVILMLVEDHLRLQSKLSCASS 502
Query: 759 KKDASPSPLSLVSPLNNHSSLSASIGA---ESLDSLGDRRSDSSGLPLDV---------- 805
D SPLSLVSPLNN S+ +SIG + + S+ S+ SGLPLDV
Sbjct: 503 VADGYTSPLSLVSPLNNRSNSLSSIGGREPQEITSVRGSISEPSGLPLDVYYDFLNXRXY 562
Query: 806 -----LASMADANGQISAAVMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWKYRSRL 860
LASMADANGQIS+ VMERLTAAAAAEPYESVSCAFVSYGS A DLA+GWKYRSRL
Sbjct: 563 CLSQVLASMADANGQISSVVMERLTAAAAAEPYESVSCAFVSYGSYATDLADGWKYRSRL 622
Query: 861 WYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLVKKSVSMLQALLLDESGLGG 920
WYGVGLPS + GGGGSGW+SW LEKD +GNWIELPLVKKSV+MLQALLLDESGLGG
Sbjct: 623 WYGVGLPSNKALFGGGGSGWESWRF-LEKDNSGNWIELPLVKKSVAMLQALLLDESGLGG 681
Query: 921 GLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMALLSMREEDNGEDSMFMRNVNMEDEM 980
GLGIGGGSGTGMGGM+ALYQLLDSDQPFLCMLRM LLSMRE+DNGED + MRN++++D +
Sbjct: 682 GLGIGGGSGTGMGGMSALYQLLDSDQPFLCMLRMVLLSMREDDNGEDGILMRNISIDDGI 741
Query: 981 SEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLYSE 1040
EG RKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLYSE
Sbjct: 742 PEG-------------------RKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLYSE 782
Query: 1041 VWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLILDDRALAAD 1100
VWHSV +DR LRKQYLE+ILPPFVA+LRRWRPLLAGIHELATADGLNPL +DDRALAAD
Sbjct: 783 VWHSVGKDRNPLRKQYLESILPPFVAILRRWRPLLAGIHELATADGLNPLTVDDRALAAD 842
Query: 1101 SLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSLLERKQ 1160
+LP+EAA+ MI+ WAAAFASPPAAMALAMIAAGA+GG+ AP TSQLRRD+SLLERK
Sbjct: 843 TLPIEAALGMIAPAWAAAFASPPAAMALAMIAAGASGGETTAPATTSQLRRDSSLLERKT 902
Query: 1161 TRLYTFSSFQKTSEVTNKSSPLPKDKASAKAAALAAARDLERNAKIGSGRGLSAVAMATS 1220
TRL+TFSSFQK EV N+ LPKDKA+AKAAALAAARDLERNAKIGSGRGLSAVAMATS
Sbjct: 903 TRLHTFSSFQKPLEVPNRPPSLPKDKAAAKAAALAAARDLERNAKIGSGRGLSAVAMATS 962
Query: 1221 AQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGKDFNALSYKFIAVLVASFALA 1280
AQRRN DTERV+RWN SEAM VAWMECLQP DTKSVYGKDFNALSYKFIAVLVASFALA
Sbjct: 963 AQRRNTGDTERVKRWNNSEAMAVAWMECLQPFDTKSVYGKDFNALSYKFIAVLVASFALA 1022
Query: 1281 RNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFWKL 1340
RN+QRSE+DRR+QVD+I HR C G+RAWRKL+H LIEMKCLFGP +H S P R+FWKL
Sbjct: 1023 RNIQRSEVDRRTQVDVIDHHRMCKGIRAWRKLVHYLIEMKCLFGPIGEHFSKPSRVFWKL 1082
Query: 1341 DFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAISMEA 1400
D MESSSRMRRCLRRNY GSDH GAAANYEDQ++ K G+E ++ SNA I+AA+AI++EA
Sbjct: 1083 DLMESSSRMRRCLRRNYRGSDHCGAAANYEDQVDLKNGEE-ALSSSNASILAADAIAIEA 1141
Query: 1401 VNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIEQTLQASADSSDIPPARDQDLVSSST 1460
VN+DDEQ E D+LD R +++ D + ++E EQ LQASA+SS DQ+L+ S+
Sbjct: 1142 VNDDDEQMEIDSLDGRTDDVEQSAVDSSKLTETSEQNLQASAESSSTQIVNDQELIQGSS 1201
Query: 1461 AVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTE--SPEEGTSEL 1518
V PGYVPSELDERI+ ELPS+MVRPLRVI+GTFQVTTRRINFIVD+++ + + + +
Sbjct: 1202 PVAPGYVPSELDERIILELPSTMVRPLRVIQGTFQVTTRRINFIVDSSDLNATTDSSCKP 1261
Query: 1519 RNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQAR 1578
++QEKDR+W+MSSLHQI+SRRYLLRRSALELFMVDRSN+FFDFGSTEGR+NAYRAIVQ R
Sbjct: 1262 KDQEKDRTWMMSSLHQIHSRRYLLRRSALELFMVDRSNYFFDFGSTEGRKNAYRAIVQVR 1321
Query: 1579 PPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPW 1638
PPHLND+YLATQRPEQLLKRTQLMERWARWEISNFEYLM LNTLAGRSYNDITQYPVFPW
Sbjct: 1322 PPHLNDVYLATQRPEQLLKRTQLMERWARWEISNFEYLMHLNTLAGRSYNDITQYPVFPW 1381
Query: 1639 ILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSA 1698
ILSDY+SE+LDL++PSS+RDLSKPVGALN D+LKKFQERYSSF+DPVIPKFHYGSHYSSA
Sbjct: 1382 ILSDYTSESLDLSDPSSFRDLSKPVGALNADRLKKFQERYSSFEDPVIPKFHYGSHYSSA 1441
Query: 1699 GTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLP 1758
GTVLYYLFRVEPFTTLSIQLQGGKFDHADRMF DI+ TWNGVLEDMSDVKELVPELFYLP
Sbjct: 1442 GTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFLDISGTWNGVLEDMSDVKELVPELFYLP 1501
Query: 1759 EILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIF 1818
EILTNENSIDFGTTQLG LD V LPPWA NP+DFIHKHRMALES++VSAHLHEW+DLIF
Sbjct: 1502 EILTNENSIDFGTTQLGQNLDFVKLPPWAXNPIDFIHKHRMALESEHVSAHLHEWIDLIF 1561
Query: 1819 GYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMK 1878
GYKQRGKEAISANNVFFYITYEGTVDIDKISDP QQRA QDQIAYFGQTPSQLLTVPH+K
Sbjct: 1562 GYKQRGKEAISANNVFFYITYEGTVDIDKISDPAQQRATQDQIAYFGQTPSQLLTVPHLK 1621
Query: 1879 KMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVDMNAPAAHIARH 1938
K PL DV+HLQTIFRNPK V+ Y VP PERCNLPAAAIHA+SDTVVIVD+NAPAAH+A+H
Sbjct: 1622 KKPLADVLHLQTIFRNPKSVRSYPVPTPERCNLPAAAIHATSDTVVIVDINAPAAHVAQH 1681
Query: 1939 NWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRS 1998
WQPNTPDGQG PFLFQHGK+S + SGTF+RMFKG GS ADEW FP+A AFA+SGIRS
Sbjct: 1682 KWQPNTPDGQGAPFLFQHGKSSLNSTSGTFMRMFKGQAGSTADEWQFPQAPAFAASGIRS 1741
Query: 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ 2058
S++VSIT DK+IITGGHVD SIKL++SDG +TLETA GHCAPVTCL++S DSN+LVTGS+
Sbjct: 1742 SSIVSITWDKDIITGGHVDNSIKLISSDGGRTLETAYGHCAPVTCLSVSHDSNYLVTGSR 1801
Query: 2059 DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS-STPANASADKSRRRRIEGPIHVLR 2117
DTT+L+WRIHR T R+ ++ +S MGT ++ GS S ++ ADKSR+ RIEGPIHVLR
Sbjct: 1802 DTTLLVWRIHRLSTPRSSSVSETS-MGTGMSTSGSGSNLSSILADKSRKHRIEGPIHVLR 1860
Query: 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTW 2177
GHHREI+CCCV+SDLG+VVSCS SSD+L+HSIRRGRLIRRL G++AHAV LSSEGVI+TW
Sbjct: 1861 GHHREIVCCCVNSDLGIVVSCSQSSDILIHSIRRGRLIRRLAGIEAHAVCLSSEGVILTW 1920
Query: 2178 NKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237
N+ Q TLS+FTLNG L+ARA P S SI CMEIS+DG SALIG+NSS N + N
Sbjct: 1921 NESQCTLSTFTLNGNLIARAPFPFSSSISCMEISVDGESALIGINSSRQTNKTRSNSWDF 1980
Query: 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297
K+ + DL D++++++R D P PS+CFLDLHTLKVFH L+L EGQDITALALNKD
Sbjct: 1981 KLKKP---ELDLTPDETLEDDRLDVPVPSVCFLDLHTLKVFHTLRLKEGQDITALALNKD 2037
Query: 2298 NTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGDGLSPLIKS 2342
NTNLLVSTAD+QLIVFTDPALSLKVVDQMLK+GWEG+GLSPLIKS
Sbjct: 2038 NTNLLVSTADRQLIVFTDPALSLKVVDQMLKIGWEGEGLSPLIKS 2082
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820942|ref|XP_002878354.1| hypothetical protein ARALYDRAFT_324535 [Arabidopsis lyrata subsp. lyrata] gi|297324192|gb|EFH54613.1| hypothetical protein ARALYDRAFT_324535 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2947 bits (7641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1604/2339 (68%), Positives = 1866/2339 (79%), Gaps = 93/2339 (3%)
Query: 24 SSGMVRRPAEVLGQVHVATRMRPAEALWALAYGGPMSLLTLTVGNVHKESLEPQPGNFPL 83
++G RRPAEV+G+VHVATRM+ E+ WALAYGGPMSLL LTV +VHK+S+EP N P
Sbjct: 585 AAGTQRRPAEVIGKVHVATRMKSVESFWALAYGGPMSLLPLTVSSVHKDSVEPCSRNVPS 644
Query: 84 SLATAALAAPIFRIISIAIQHPGNNEELIRTRGPEVLSRILNYLLKTLSSLGSGKHNGVG 143
SL T +LAAPIFR+IS+AIQHPGNNEEL RTRGPE+L+ IL YLL +L+SL +H+ VG
Sbjct: 645 SLTTYSLAAPIFRMISVAIQHPGNNEELSRTRGPEILATILGYLLHSLASLDL-QHDRVG 703
Query: 144 DEELVAAVVSLCQSQKSNHALKVQLFSTLLLDLRIWSLCSYGLQKKLLSSLADMVFTESS 203
DEELVAA+VSLCQSQK NHALKVQLF TLLLDL+IWS+C+Y LQKKLLSSL DMVFTE++
Sbjct: 704 DEELVAAIVSLCQSQKINHALKVQLFRTLLLDLKIWSVCNYRLQKKLLSSLQDMVFTEAT 763
Query: 204 VMRDANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAMRPMGEVNALVDELLVIIELLIGA 263
MR+A+AIQ+LLDGCRR +WTI+EKDSVNTFSL R +GEVNALVDELLVIIELL+GA
Sbjct: 764 AMRNADAIQVLLDGCRRYFWTIQEKDSVNTFSLHGDARQVGEVNALVDELLVIIELLMGA 823
Query: 264 TPPSLAAEDVCRLLGFLVDCPQPNQVARVLHLIYRLVVQPNTARAQRFAETFLASGGIES 323
S AA+D+ RLLGF++D PQPNQV+RVLHL++RLVVQPN A+AQ FAE F+ SGGIE+
Sbjct: 824 ASSSFAADDLHRLLGFIIDSPQPNQVSRVLHLMFRLVVQPNAAKAQTFAEAFITSGGIET 883
Query: 324 LLVLLQKEAKAGDHSVP---------VPVTKSDES--------PSVQGTEPDSESANLER 366
LLVLLQ+EAK G+ V VP S++S + D+ES
Sbjct: 884 LLVLLQREAKTGEDDVADSVAKGETNVPTYHSEQSYHNGPGLLKQLDSVPQDNESD--PH 941
Query: 367 SEDDIVGSQKESDS--QEKDSESQPFNTDRGPVAISNTEKIERTSSVSENPFVKDLGGIS 424
+ DD VGS KE++S QEK S D V ISN+ K R SSVSE PF
Sbjct: 942 THDDNVGSLKETESVQQEKAHGSATVICDSDSVTISNSMKAGRISSVSETPF-------- 993
Query: 425 LSISADNARNNVYNIDKSDGIIVAIIELLGALISAGHLKVGSSTPSDVASNFPSIGLHER 484
+NARNNV D D ++V II L+GAL S GHLK SDV SN HE
Sbjct: 994 ----NNNARNNV---DDRDRVMVGIIRLIGALTSKGHLKFSVGAKSDVMSNLMGSDFHEN 1046
Query: 485 GGTMFDDKVSLLLFALQKAFQAAPNRLMTGNVYTALLGASMNTSAVATEDGLNFYDSRHR 544
GGTMFDDKV+LLLFAL KAFQAAPNRLMT NVYT LLGAS+N S+ TEDGLNF D HR
Sbjct: 1047 GGTMFDDKVALLLFALLKAFQAAPNRLMTDNVYTTLLGASVNASS--TEDGLNFCDLGHR 1104
Query: 545 FEHSQLLLVLLHSIPYASRALQSRALQDLLILACSHPENRNSLTMMEEWPEWILEILISN 604
FEH QLLL+LL S+P+AS+ALQ+RALQD+L LACSHPENR+SLT MEEWPEWILEILISN
Sbjct: 1105 FEHPQLLLILLRSLPFASKALQNRALQDILFLACSHPENRSSLTKMEEWPEWILEILISN 1164
Query: 605 YEMGASKQSSSPSLGDIEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSST 664
YE A KQSSSP ++EDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSST
Sbjct: 1165 YEKDAGKQSSSPGFAEVEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSST 1224
Query: 665 GEQRTRREESLPLFKRRLLGGLLDFATRELQVQTQVIAAAAAGVAAEGLPPKDAKAEARN 724
GE+R RREESLP+FKRRLLGGLLDFA ELQ QTQVIAAA+AG AAE L PKDAKA N
Sbjct: 1225 GEKRIRREESLPIFKRRLLGGLLDFAASELQAQTQVIAAASAGFAAESLTPKDAKAGVEN 1284
Query: 725 AAQLSVALVENAIVILMLVEDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSSLSASIG 784
AA LSV LVEN +VILMLVEDHLRLQSK +CA+ D SPSPLSLV P N S ++G
Sbjct: 1285 AALLSVFLVENTVVILMLVEDHLRLQSKQNCAASAVDVSPSPLSLVYPPNYRSHTLPTVG 1344
Query: 785 AESLDSLGDRRSDS--SGLPLDVLASMADANGQISAAVMERLTAAAAAEPYESVSCAFVS 842
S S S G+ LD+LASMADA+GQIS AVMERL AAAAAEPYESVSCAFVS
Sbjct: 1345 ESSEVSSSRASVSSDSGGVHLDILASMADASGQISTAVMERLAAAAAAEPYESVSCAFVS 1404
Query: 843 YGSCAMDLAEGWKYRSRLWYGVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLVK 902
YGSC MDLA+ WKYRSRLWYGVGLPSK+S GGGGSGWDSW +L+KDA GNWIELPLVK
Sbjct: 1405 YGSCTMDLADAWKYRSRLWYGVGLPSKTSCFGGGGSGWDSWKHALQKDAQGNWIELPLVK 1464
Query: 903 KSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMALLSMREE 962
KSVSMLQALLLDESGLGGGLGI GGSGTGMGGM+ LYQLLDSDQPFLCMLRM LLS+REE
Sbjct: 1465 KSVSMLQALLLDESGLGGGLGICGGSGTGMGGMSGLYQLLDSDQPFLCMLRMVLLSLREE 1524
Query: 963 DNGEDSMFMRNVNMEDEMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMPI 1022
D+GEDS+ M+N++ ED ++ G+ N SLD S+ LS R+ SALLWSVLSP+LNMPI
Sbjct: 1525 DHGEDSLLMKNLSSEDGITGGIQCPLGNSASLDISSQLSMRQSPSALLWSVLSPILNMPI 1584
Query: 1023 SDSKRQRVLVASCVLYSEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHELA 1082
SDSKRQRVLV +CVLYSEVW++VS+D++ LRKQYLEAILPPFVA+LRRWRPLLAGIHELA
Sbjct: 1585 SDSKRQRVLVTTCVLYSEVWNAVSKDKRPLRKQYLEAILPPFVAILRRWRPLLAGIHELA 1644
Query: 1083 TADGLNPLILDDRALAADSLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGD--- 1139
T DGLNPL++D RALAAD+LP+EAA++MIS WAAAFASPP+AMALAMIAAGAAG +
Sbjct: 1645 TGDGLNPLVVDTRALAADALPIEAALSMISPEWAAAFASPPSAMALAMIAAGAAGWEAPA 1704
Query: 1140 APAPVATSQLRRDTSLLERKQTRLYTFSSFQKTSEVTNKSSP-LPKDKASAKAAALAAAR 1198
PA A LRRDTSLLERK T+L TFSSFQK E N +P P+DKA+AKAAALAAAR
Sbjct: 1705 PPAAPAPPPLRRDTSLLERKSTKLQTFSSFQKPLEAPNVDTPGRPRDKAAAKAAALAAAR 1764
Query: 1199 DLERNAKIGSGRGLSAVAMATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVY 1258
DLE NAKIGSGRGLSAVAMATSA RRN SD ER++RWNISEAMGVAW+ECLQPVDTKSVY
Sbjct: 1765 DLEWNAKIGSGRGLSAVAMATSAARRNISDMERLQRWNISEAMGVAWIECLQPVDTKSVY 1824
Query: 1259 GKDFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIE 1318
GKDFNALSYKFIA+LVASFA +RNMQRSEIDRR Q D I R+R C G+R WRKL+H LIE
Sbjct: 1825 GKDFNALSYKFIALLVASFAFSRNMQRSEIDRRLQNDKIVRNRLCMGIRGWRKLVHHLIE 1884
Query: 1319 MKCLFGPFEDHLSDPRRIFWKLDFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPG 1378
M+C FGPF DHL P+ +FWKLD MESSSRMR+CLRRNY G+DH NY+DQ + K
Sbjct: 1885 MRCFFGPFGDHLCSPKHVFWKLDSMESSSRMRQCLRRNYSGTDHLETTRNYDDQTDLK-- 1942
Query: 1379 QENVINPSNAPIVAAEAISMEAVNEDDEQTENDNLDDRVYNLDNVGEDQTTVSEKIEQTL 1438
N +AP++A EAIS E + ED+E + ++L+ N+ + GE++ S +E +
Sbjct: 1943 -----NKQDAPVLAVEAISKEIMYEDNEHGDANDLEIE-GNVGHKGENEERRSGSLEDAI 1996
Query: 1439 QASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTT 1498
S +D P +Q++V +S P SEL ERI+ E+ S+MVRPL V++GTFQ+TT
Sbjct: 1997 TLSTGINDHRPLSEQNMVQNS----PEVDLSELKERIILEISSTMVRPLGVVKGTFQITT 2052
Query: 1499 RRINFIVDNTESPE-EGTSE---LRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDR 1554
RRINFIVD E +G S+ LR++E+DRSWLMSSLHQIYSRRYLLR+SALELFMVDR
Sbjct: 2053 RRINFIVDIREDQHLDGKSDGLKLRDKERDRSWLMSSLHQIYSRRYLLRKSALELFMVDR 2112
Query: 1555 SNFFFDFGSTEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFE 1614
SN+FFDFG+TEGRRNA RAIVQARPPHL +IYLATQ+PEQ+ +RTQLME WARWEISNFE
Sbjct: 2113 SNYFFDFGNTEGRRNACRAIVQARPPHLKNIYLATQKPEQVSRRTQLMESWARWEISNFE 2172
Query: 1615 YLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKF 1674
YLMQLNTLAGRSYNDITQYPVFPWIL DY SE LDL+NPS+YRDLSKP+GALNP++LKKF
Sbjct: 2173 YLMQLNTLAGRSYNDITQYPVFPWILCDYVSEILDLSNPSNYRDLSKPIGALNPERLKKF 2232
Query: 1675 QERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIA 1734
QE+YSSF+DPVIPK+HYGSHYSSAG VL+YL RVEPFTTL IQLQG KFD AD++FSDIA
Sbjct: 2233 QEQYSSFEDPVIPKYHYGSHYSSAGAVLHYLARVEPFTTLLIQLQGRKFDRADQIFSDIA 2292
Query: 1735 ATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFI 1794
ATW GVL+DM++VKELVPELFYLPE+L+NEN ++ LDSV LPPWA++P+DF+
Sbjct: 2293 ATWKGVLQDMNNVKELVPELFYLPEVLSNENLVE--------NLDSVKLPPWAKSPIDFV 2344
Query: 1795 HKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQ 1854
HK RMALES++VSAHLHEW+DLIFGYKQRGKEA ANNVFFY TYEGTVDIDKI+D VQQ
Sbjct: 2345 HKQRMALESEHVSAHLHEWIDLIFGYKQRGKEATLANNVFFYTTYEGTVDIDKITDSVQQ 2404
Query: 1855 RAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQTIFRNPKEVKPYAVPVPERCNLPAA 1914
+A QDQI FGQTPSQL TVPH+K+MPL DV+H+QTIFRNPK +KPY VP PE CNLPAA
Sbjct: 2405 QATQDQIVNFGQTPSQLWTVPHIKRMPLKDVLHMQTIFRNPKAIKPYPVPAPEHCNLPAA 2464
Query: 1915 AIHASSDTVVIVDMNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKG 1974
AI ASSDTVVIVDMN PAAHIA+H WQPNTPDGQ PF+F HGK S++ GT +RMFK
Sbjct: 2465 AIKASSDTVVIVDMNVPAAHIAQHKWQPNTPDGQNAPFIFHHGKPSST--GGTLIRMFKS 2522
Query: 1975 PGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034
+W +P+A AFAS GIRSS+V +IT+D EIITGGHVD SIK+++SDGAKTLETA
Sbjct: 2523 -------DWEYPQAQAFASLGIRSSSVTAITNDGEIITGGHVDNSIKIVSSDGAKTLETA 2575
Query: 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094
GH APVTCLALS D+NFLVTGS+DTT+LLWR H+ FTS+T S T + SS
Sbjct: 2576 FGHSAPVTCLALSPDNNFLVTGSRDTTVLLWRFHKGFTSQT-----SESEQTTSSVTSSS 2630
Query: 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL 2154
+N A+K+++ RIEGPI VLRGH REI CCCVSSD G+VVSCS+SSD+LLHS R+GRL
Sbjct: 2631 ASSNNLANKAKKHRIEGPIQVLRGHQREISCCCVSSDQGIVVSCSESSDVLLHSTRKGRL 2690
Query: 2155 IRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG 2214
IRRLVGV+AHA+ +SS+GVI+ W++ + +S+FT+NGVL+++A+LP S +I CME+S+DG
Sbjct: 2691 IRRLVGVEAHALCISSDGVIVVWSRSESCISTFTINGVLISKARLPSSCTISCMELSMDG 2750
Query: 2215 HSALIGVNSSSTNNGSYD-NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273
+ +IGVNS +GS NI +G ED +S++S + R + PSPSICFL+L+
Sbjct: 2751 QNVVIGVNSFFDIDGSRSFNI------LTGEED---SSNRSKEVERLNIPSPSICFLNLY 2801
Query: 2274 TLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWE 2332
TL+VFHVLKLGEGQ IT +ALN DNTNLLVST DKQLI+FT+PALS K+VDQ LK G E
Sbjct: 2802 TLQVFHVLKLGEGQGITTMALNTDNTNLLVSTEDKQLIIFTNPALSSKLVDQTLKPGSE 2860
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2342 | ||||||
| ZFIN|ZDB-GENE-100922-283 | 2647 | nbeal2 "neurobeachin-like 2" [ | 0.263 | 0.233 | 0.391 | 4.3e-119 | |
| RGD|1306501 | 2745 | Nbeal2 "neurobeachin-like 2" [ | 0.206 | 0.176 | 0.430 | 6.8e-116 | |
| UNIPROTKB|Q6ZNJ1 | 2754 | NBEAL2 "Neurobeachin-like prot | 0.205 | 0.175 | 0.434 | 1.9e-113 | |
| MGI|MGI:2448554 | 2742 | Nbeal2 "neurobeachin-like 2" [ | 0.206 | 0.176 | 0.434 | 1.8e-108 | |
| FB|FBgn0086911 | 3578 | rg "rugose" [Drosophila melano | 0.279 | 0.183 | 0.357 | 1.1e-104 | |
| MGI|MGI:1933162 | 2856 | Lrba "LPS-responsive beige-lik | 0.243 | 0.199 | 0.383 | 3.7e-103 | |
| UNIPROTKB|E1BND6 | 2786 | Bt.111067 "Uncharacterized pro | 0.242 | 0.204 | 0.382 | 1.9e-102 | |
| RGD|1311428 | 2709 | Lrba "LPS-responsive vesicle t | 0.251 | 0.217 | 0.379 | 1.1e-101 | |
| UNIPROTKB|E1C6E6 | 2850 | LRBA "Uncharacterized protein" | 0.244 | 0.200 | 0.379 | 4.7e-101 | |
| UNIPROTKB|P50851 | 2863 | LRBA "Lipopolysaccharide-respo | 0.242 | 0.198 | 0.385 | 5.4e-101 |
| ZFIN|ZDB-GENE-100922-283 nbeal2 "neurobeachin-like 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1130 (402.8 bits), Expect = 4.3e-119, Sum P(5) = 4.3e-119
Identities = 262/669 (39%), Positives = 377/669 (56%)
Query: 1421 DNVGEDQTTVS-EKIEQTLQASADSSDIPPAR--DQDLVSSSTAVLPGYVPSELDERIVF 1477
DN+G D S E + + A SD+ + D+D+V A S+ E++V
Sbjct: 1782 DNMGADSPRSSTEPLPLAVAREAKVSDMDDDKLEDEDIVFLEEAE-EAEEESQ-KEKLVL 1839
Query: 1478 ELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIXX 1537
++ + V+ G +VTT + F D + EE T E + R +S L ++
Sbjct: 1840 SEDCELITIVAVVPGRLEVTTHHLYFY-DGSSEKEE-TEEGIGFDFKRP--LSQLREVHL 1895
Query: 1538 XXXXXXXXALELFMVDRSNFFFDFGSTEGRRN-AYRAIVQARPPHLNDIYLATQRPEQLL 1596
ALELF +D+S++F +F +G RN Y I+ RPP+L Y ++ P++LL
Sbjct: 1896 RRYNLRRSALELFFIDQSHYFINF--RKGVRNKVYSRILGLRPPNL--FYFGSRSPQELL 1951
Query: 1597 KRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSY 1656
K + L RW EISNFEYLMQLNT+AGR+YND++QYPVFPW+L DY+S LDL +P+ +
Sbjct: 1952 KASNLTHRWVCREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLCDYTSAELDLDDPAVF 2011
Query: 1657 RDLSKPVGALNPDQLKKFQERYSSFDDPV--IPKFHYGSHYSSAGTVLYYLFRVEPFTTL 1714
RDLSKP+G +NP + +E+Y SF+DP I KFHYG+HYS+A V++Y+ R EPFT+L
Sbjct: 2012 RDLSKPIGVVNPRHAQNVREKYESFEDPTGTIDKFHYGTHYSNAAGVMHYMIRTEPFTSL 2071
Query: 1715 SIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQL 1774
IQLQ GKFD ADR F IAA W +E +DVKEL+PE FY PE L N N D G Q+
Sbjct: 2072 HIQLQSGKFDCADRQFHSIAAAWQARMESPADVKELIPEFFYFPEFLENMNGFDLGCLQI 2131
Query: 1775 GG-KLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNV 1833
K+++V LPPWA + DFI KHR ALES++VSAHLHEW+DLIFGYKQRG EA+ A NV
Sbjct: 2132 SQEKVNNVLLPPWASSREDFIRKHRKALESEHVSAHLHEWIDLIFGYKQRGPEAVEALNV 2191
Query: 1834 FFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQT--- 1890
F+Y TYEG VD+D I++ +++A + I+ FGQTP QLL PH +M +
Sbjct: 2192 FYYCTYEGAVDLDAIANETERKALEGIISNFGQTPCQLLKEPHPPRMSAENAFRRAARLD 2251
Query: 1891 -----IFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVD----MNAPAAH--IARHN 1939
+F +++ + V + L A + + I+ + +A+ I H+
Sbjct: 2252 ILPPNLFDQLSKLRSFKEVVSDGLALVQAVVPRNQTRSFIIPGSDILVTVSANGMIGTHS 2311
Query: 1940 WQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSS 1999
W P + F F + ++P + FL GP G + S
Sbjct: 2312 WLPYDKN-IANYFTFTRDPSVSNPKTQRFL---SGPFSPGVE---------------MGS 2352
Query: 2000 AVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ 2058
V+ ++ D ++ +GGH D S+++ AK + H VTCLAL +L++GS+
Sbjct: 2353 QVLVVSSDGRLLFSGGHWDCSLRVTMLGKAKLVGRICRHIDVVTCLALDLCGIYLISGSR 2412
Query: 2059 DTTILLWRI 2067
DTT ++W++
Sbjct: 2413 DTTCMVWQV 2421
|
|
| RGD|1306501 Nbeal2 "neurobeachin-like 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1075 (383.5 bits), Expect = 6.8e-116, Sum P(5) = 6.8e-116
Identities = 225/523 (43%), Positives = 314/523 (60%)
Query: 1564 TEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLA 1623
T+ R Y +++ RPP YL+++ P+++L+ + L ++W + EISNFEYLMQLNT+A
Sbjct: 2020 TQVRNQVYSLLLRLRPPTQG--YLSSRSPQEMLRASGLTQKWVQREISNFEYLMQLNTIA 2077
Query: 1624 GRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDD 1683
GR+YND++QYPVFPW+L DY S LDL NP+ +RDLSKP+G +NP + +E+Y SF+D
Sbjct: 2078 GRTYNDLSQYPVFPWVLQDYVSPVLDLNNPAVFRDLSKPIGVVNPKHAQLVREKYESFED 2137
Query: 1684 PV--IPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVL 1741
P I KFHYG+HYS+A V++YL RVEPFT+L +QLQ G+FD +DR F +AA W L
Sbjct: 2138 PAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARL 2197
Query: 1742 EDMSDVKELVPELFYLPEILTNENSIDFGTTQLGG-KLDSVGLPPWAENPVDFIHKHRMA 1800
E +DVKEL+PE FY P+ L N+N D G QL K+ V LPPWA +P DFI KHR A
Sbjct: 2198 ESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQKHRRA 2257
Query: 1801 LESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQ 1860
LES+YVS HLHEW+DLIFGYKQRG A A NVF+Y TYEG VD+D ++D +++A +
Sbjct: 2258 LESEYVSTHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVADERERKALEGI 2317
Query: 1861 IAYFGQTPSQLLTVPHMKKMPLGDVI--------HLQTIFRNPKEVKPY-AVPVPERCNL 1911
I+ FGQTP QLL PH ++ + H +IF+N ++K + A V E L
Sbjct: 2318 ISNFGQTPCQLLKEPHPPRLSAEEAAIRLARLDTHSPSIFQNLDQLKAFFAEVVSEGVPL 2377
Query: 1912 PAAAI-HASSDTVVIV---DMNAPAAH---IARHNWQPNTPDGQGTPFLFQHGKASASPA 1964
A + H + + + DM + + H+W P + F F +P
Sbjct: 2378 LLALVPHRQTHSFITQSASDMLVTVSASGLLGTHSWLPYDRNINNY-FSFSKDPTMGNPK 2436
Query: 1965 SGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLT 2024
++ GP G SG+R A+ K + +GGH DGS+++
Sbjct: 2437 ---VQKLLSGPWAPG--------------SGVRGQALAVAPDGKLLFSGGHWDGSLRVTL 2479
Query: 2025 SDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067
+ L S H VTCLAL + +L++GS+DTT ++WR+
Sbjct: 2480 LSRGRLLSQLSRHLDVVTCLALDTCGIYLISGSRDTTCMVWRL 2522
|
|
| UNIPROTKB|Q6ZNJ1 NBEAL2 "Neurobeachin-like protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1074 (383.1 bits), Expect = 1.9e-113, Sum P(6) = 1.9e-113
Identities = 228/525 (43%), Positives = 319/525 (60%)
Query: 1564 TEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLA 1623
T+ R Y +++ RPP YL+++ P+++L+ + L ++W + EISNFEYLMQLNT+A
Sbjct: 2029 TQVRNQVYSWLLRLRPPSQG--YLSSRSPQEMLRASGLTQKWVQREISNFEYLMQLNTIA 2086
Query: 1624 GRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDD 1683
GR+YND++QYPVFPW+L DY S LDL+NP+ +RDLSKP+G +NP + +E+Y SF+D
Sbjct: 2087 GRTYNDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFED 2146
Query: 1684 PV--IPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVL 1741
P I KFHYG+HYS+A V++YL RVEPFT+L +QLQ G+FD +DR F +AA W L
Sbjct: 2147 PAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARL 2206
Query: 1742 EDMSDVKELVPELFYLPEILTNENSIDFGTTQLGG-KLDSVGLPPWAENPVDFIHKHRMA 1800
E +DVKEL+PE FY P+ L N+N D G QL K+ V LPPWA +P DFI +HR A
Sbjct: 2207 ESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQA 2266
Query: 1801 LESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQ 1860
LES+YVSAHLHEW+DLIFGYKQRG A A NVF+Y TYEG VD+D ++D +++A +
Sbjct: 2267 LESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVTDERERKALEGI 2326
Query: 1861 IAYFGQTPSQLLTVPHMKKMPLGDVIH----LQT----IFRNPKEVKPY-AVPVPERCNL 1911
I+ FGQTP QLL PH ++ + H L T IF++ E+K + A V + L
Sbjct: 2327 ISNFGQTPCQLLKEPHPTRLSAEEAAHRLARLDTNSPSIFQHLDELKAFFAEVVSDGVPL 2386
Query: 1912 PAAAI-HASSDTVV------IVDMNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPA 1964
A + H + + ++ + + + H+W P + F F S P
Sbjct: 2387 VLALVPHRQPHSFITQGSPDLLVTVSASGLLGTHSWLPYDRNISNY-FSF-----SKDPT 2440
Query: 1965 SGTFL--RMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKL 2022
G+ R+ GP W P SG+ A+ K + +GGH DGS+++
Sbjct: 2441 MGSHKTQRLLSGP-------W-VP------GSGVSGQALAVAPDGKLLFSGGHWDGSLRV 2486
Query: 2023 LTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067
K L S H VTCLAL + +L++GS+DTT ++WR+
Sbjct: 2487 TALPRGKLLSQLSCHLDVVTCLALDTCGIYLISGSRDTTCMVWRL 2531
|
|
| MGI|MGI:2448554 Nbeal2 "neurobeachin-like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.8e-108, Sum P(5) = 1.8e-108
Identities = 227/523 (43%), Positives = 316/523 (60%)
Query: 1564 TEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLA 1623
T+ R Y +++ RPP YL+++ P ++L+ + L ++W + EISNFEYLMQLNT+A
Sbjct: 2017 TQLRNQVYSLLLRLRPPTQG--YLSSRSPLEMLRASGLTQKWVQREISNFEYLMQLNTIA 2074
Query: 1624 GRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDD 1683
GR+YND++QYPVFPW+L DY S LDL+NP+ +RDLSKP+G +NP + +E+Y SF+D
Sbjct: 2075 GRTYNDLSQYPVFPWVLQDYVSPVLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFED 2134
Query: 1684 PV--IPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVL 1741
P I KFHYG+HYS+A V++YL RVEPFT+L +QLQ G+FD +DR F +AA W L
Sbjct: 2135 PAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARL 2194
Query: 1742 EDMSDVKELVPELFYLPEILTNENSIDFGTTQLGG-KLDSVGLPPWAENPVDFIHKHRMA 1800
E +DVKEL+PE FY P+ L N+N D G QL K+ V LPPWA +P DFI KHR A
Sbjct: 2195 ESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWAGSPEDFIQKHRQA 2254
Query: 1801 LESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQ 1860
LES+YVS HLHEW+DLIFGYKQRG A A NVF+Y TYEG VD+D ++D +++A +
Sbjct: 2255 LESEYVSTHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVADERERKALEGI 2314
Query: 1861 IAYFGQTPSQLLTVPHMKKMPLGDVIH----LQT----IFRNPKEVKPY-AVPVPERCNL 1911
I+ FGQTP QLL PH ++ + + L T IF+N ++K + A V E L
Sbjct: 2315 ISNFGQTPCQLLKEPHPPRLSAEEAANRLARLDTNSPSIFQNLNQLKAFFAEVVSEAVPL 2374
Query: 1912 PAAAI-HASSDTVVIV---DMNAPAAH---IARHNWQPNTPDGQGTPFLFQHGKASASPA 1964
A + H S + + DM + + H W P + F F SP
Sbjct: 2375 VLALVPHRQSHSFITQSSSDMLVTVSASGLLGTHTWLPYDRNINNY-FTFSKDPTMGSPK 2433
Query: 1965 SGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLT 2024
++ GP W + SG+ + A+ K + +GGH DGS+++ +
Sbjct: 2434 ---VQKLLSGP-------W-------VSDSGVSAQALAVAPDGKLLFSGGHWDGSLRVTS 2476
Query: 2025 SDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067
+ L S H VTCLAL + +L++GS+DTT ++WR+
Sbjct: 2477 LPRGRLLNQLSRHLDIVTCLALDTCGIYLISGSRDTTCMVWRL 2519
|
|
| FB|FBgn0086911 rg "rugose" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.1e-104, Sum P(5) = 1.1e-104
Identities = 247/691 (35%), Positives = 373/691 (53%)
Query: 1420 LDNVGEDQTTVSEKIEQTLQASADSSDIPPARDQDLVSSSTAVLPGY-VPSELDERIVFE 1478
L+N G + + + E Q + + + +L+ + ++ + +L +
Sbjct: 2727 LENGGPEDAILQTRDEFHTQIAVSRTHPSGQHNGELLDDAELLIEDRELDLDLTGPVNIS 2786
Query: 1479 LPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPE----EGTSELRNQEKDRSWLMSSLHQ 1534
+ ++ P V GT +T+ + F VD E PE +G W S +
Sbjct: 2787 TKARLIAPGLVAPGTVSITSTEMFFEVDE-EHPEFQKIDGEVLKYCDHLHGKWYFSEVRA 2845
Query: 1535 IXXXXXXXXXXALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPHLNDIYLATQR--- 1591
I ALE+F+ R++ F F + +A+ + I T+R
Sbjct: 2846 IFSRRYLLQNVALEIFLASRTSILFAFPDQHTVKKVIKALPRVGVGIKYGIP-QTRRASM 2904
Query: 1592 --PEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLD 1649
P QL++ + + ++W R EISNFEYLM LNT+AGR+YND+ QYP+FPW+L++Y S++LD
Sbjct: 2905 MSPRQLMRNSNMTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYESKDLD 2964
Query: 1650 LANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVE 1709
L+ PS+YRDLSKP+GALNP + F+ERY S+D IP FHYG+HYS+A L +L RVE
Sbjct: 2965 LSLPSNYRDLSKPIGALNPSRRAYFEERYESWDSDTIPPFHYGTHYSTAAFTLNWLVRVE 3024
Query: 1710 PFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDF 1769
PFTT+ + LQGGKFD+ DR+FS ++ +W D SDVKEL+PE ++LPE+ N +
Sbjct: 3025 PFTTMFLALQGGKFDYPDRLFSSVSLSWKNCQRDTSDVKELIPEWYFLPEMFYNSSGYRL 3084
Query: 1770 GTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAIS 1829
G + G +D + LPPWA++P +F+ +RMALES++VS LH+W+DLIFGYKQRG EAI
Sbjct: 3085 GHREDGALVDDIELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAIR 3144
Query: 1830 ANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQ 1889
A NVF+Y+TYEG+VD+D + DPV + A ++QI FGQTPSQLL PH P +HL
Sbjct: 3145 ATNVFYYLTYEGSVDLDGVLDPVMREAVENQIRNFGQTPSQLLMEPHP---PRSSAMHLS 3201
Query: 1890 TIFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVDM----NAPAAH-IARHNWQPNT 1944
+ + + + N P IH S++T + + A H A + W N
Sbjct: 3202 PMMFSAMP-EDLCQMLKFYQNSPV--IHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNY 3258
Query: 1945 PDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALA--FASS-GIRSSAV 2001
+P + ++ S T + G + R L F+ IRS+
Sbjct: 3259 TASVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCF 3318
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLA-----LSSDSNFLVTG 2056
V+ + +I G D S ++ ++ AK ++ GH VTC+A ++SD ++ +G
Sbjct: 3319 VTTVDSRFLIACGFWDNSFRVFATETAKIVQIVFGHFGVVTCMARSECNITSDC-YIASG 3377
Query: 2057 SQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087
S D T+LLW H + +RT +I + TP
Sbjct: 3378 SADCTVLLW--H--WNARTQSIVGEGDVPTP 3404
|
|
| MGI|MGI:1933162 Lrba "LPS-responsive beige-like anchor" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 3.7e-103, Sum P(4) = 3.7e-103
Identities = 231/603 (38%), Positives = 331/603 (54%)
Query: 1480 PSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELR----NQEKDRSWLMSSLHQI 1535
P+ +V P V++GT VT+ + F VD E P + + + WL + + I
Sbjct: 2076 PAQLVAPSVVVKGTLSVTSSELYFEVDE-EDPNFKKIDPKILAYTEGLHGKWLFTEIRSI 2134
Query: 1536 XXXXXXXXXXALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARP------PHLNDIYLAT 1589
ALE+FM +R F+F + + + P I LAT
Sbjct: 2135 FSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLAT 2194
Query: 1590 QRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLD 1649
P QL K + + +RW EISNFEYLM LNT+AGRSYND+ QYPVFPW++++Y SE LD
Sbjct: 2195 --PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2252
Query: 1650 LANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVE 1709
L PS++RDLSKP+GALNP + F ER+ S++D +PKFHYG+HYS+A VL +L R+E
Sbjct: 2253 LTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2312
Query: 1710 PFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDF 1769
PFTT + LQGGKFDHADR FS ++ W D SD+KEL+PE +YLPE+ N N+ +
Sbjct: 2313 PFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2372
Query: 1770 GTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAIS 1829
G G + V LPPWA+ +F+ +R+ALES++VS LH+W+DLIFGYKQ+G EA+
Sbjct: 2373 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2432
Query: 1830 ANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQ 1889
A NVF+Y+TYEG V+++ I+DPV + A + QI FGQTPSQLL PH P G +
Sbjct: 2433 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHP---PRGSAMQAS 2489
Query: 1890 TIFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVD--MNAPAAHI-ARHNWQPNTPD 1946
+ + + + + N P + A++ + + + A + A + W N P
Sbjct: 2490 PLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWH-NLPA 2548
Query: 1947 GQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH 2006
QG Q + G+G L S + S V +
Sbjct: 2549 HQGA---VQDQPYQLPVEIDPLIAC-----GTGTHRRQVTDLLD-QSIQVHSQCFVITSD 2599
Query: 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD---SN-FLVTGSQDTTI 2062
++ I+ G D S ++ ++D K ++ GH VTCLA S N ++++GS+D T+
Sbjct: 2600 NRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATL 2659
Query: 2063 LLW 2065
LLW
Sbjct: 2660 LLW 2662
|
|
| UNIPROTKB|E1BND6 Bt.111067 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1025 (365.9 bits), Expect = 1.9e-102, Sum P(4) = 1.9e-102
Identities = 231/604 (38%), Positives = 329/604 (54%)
Query: 1480 PSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELR----NQEKDRSWLMSSLHQI 1535
P+ +V P V++GT VT+ + F VD E P + + + WL S + I
Sbjct: 2005 PAQLVAPSVVVKGTLSVTSSELYFEVDE-EDPNFKKIDPKILAYTEGLHGKWLFSEIRSI 2063
Query: 1536 XXXXXXXXXXALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARP------PHLNDIYLAT 1589
ALE+FM +R F+F + + + P I LA+
Sbjct: 2064 FSRRYLLQNTALEIFMANRVAIMFNFPDPATVKKVVNYLPRVGIGTSFGLPQTRRISLAS 2123
Query: 1590 QRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLD 1649
P QL K + + +RW EISNFEYLM LNT+AGR+YND+ QYPVFPW++++Y SE LD
Sbjct: 2124 --PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVITNYESEELD 2181
Query: 1650 LANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVE 1709
L PS++RDLSKP+GALNP + F ERY S++D +PKFHYG+HYS+A VL +L R+E
Sbjct: 2182 LTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2241
Query: 1710 PFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDF 1769
PFTT + LQGGKFDHADR FS I+ W D SD+KEL+PE +YL E+ N N+ +
Sbjct: 2242 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLSEMFVNFNNYNL 2301
Query: 1770 GTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAIS 1829
G G + V LPPWA+ +F+ +R+ALES++VS LH+W+DLIFGYKQ+G EA+
Sbjct: 2302 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2361
Query: 1830 ANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQ 1889
A NVF+Y+TYEG V+++ I+DPV + A + QI FGQTPSQLL PH P G +
Sbjct: 2362 ALNVFYYLTYEGAVNLNSITDPVLREAVKAQIRSFGQTPSQLLIEPHP---PRGSAMQAS 2418
Query: 1890 TIFRNPKEVKPYAVPVPERCNLPAAAIHASSD----TVVIVDMNAPAAHIARHNWQPNTP 1945
+ + + + + N P + A++ T ++ + A A + W N P
Sbjct: 2419 PLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRL-FAMNKWH-NLP 2476
Query: 1946 DGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSIT 2005
QG + P L +G L S + S V +
Sbjct: 2477 AHQGAV----QDQPYQLPVEIDPLIA----SNTGMHRRQITDLLD-QSIQVHSQCFVITS 2527
Query: 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD---SN-FLVTGSQDTT 2061
++ I+ G D S ++ ++D K ++ GH VTCL S N ++++GS+D T
Sbjct: 2528 DNRYILLCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTRSESYIGGNCYILSGSRDAT 2587
Query: 2062 ILLW 2065
+LLW
Sbjct: 2588 LLLW 2591
|
|
| RGD|1311428 Lrba "LPS-responsive vesicle trafficking, beach and anchor containing" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 1.1e-101, Sum P(4) = 1.1e-101
Identities = 237/625 (37%), Positives = 338/625 (54%)
Query: 1480 PSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELR----NQEKDRSWLMSSLHQI 1535
P+ +V P V++GT VT+ + F VD E P + + + WL + + I
Sbjct: 1929 PAQLVAPSVVVKGTLSVTSSELYFEVDE-EDPNFKKIDPKILAYTEGLHGKWLFTEIRSI 1987
Query: 1536 XXXXXXXXXXALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARP------PHLNDIYLAT 1589
ALE+FM +R F+F + + + + P I LAT
Sbjct: 1988 FSRRYLLQNTALEIFMANRVAVMFNFPDSATVKKVVNYLPRVGVGTSFGLPQTRRISLAT 2047
Query: 1590 QRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLD 1649
P QL K + + +RW EISNFEYLM LNT+AGRSYND+ QYPVFPW++++Y SE LD
Sbjct: 2048 --PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2105
Query: 1650 LANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVE 1709
L PS++RDLSKP+GALNP + F ER+ S++D +PKFHYG+HYS+A VL +L R+E
Sbjct: 2106 LTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2165
Query: 1710 PFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDF 1769
PFTT + LQGGKFDHADR FS ++ W D SD+KEL+PE +YLPE+ N N+ +
Sbjct: 2166 PFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2225
Query: 1770 GTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAIS 1829
G G + V LPPWA+ +F+ +R+ALES++VS LH+W+DLIFGYKQ+G EA+
Sbjct: 2226 GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2285
Query: 1830 ANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQ 1889
A NVF+Y+TYEG V ++ I+DPV + A + QI FGQTPSQLL PH P G +
Sbjct: 2286 ALNVFYYLTYEGAVSLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHP---PRGSAMQAS 2342
Query: 1890 TIFRNPKEVKPYAVPVPERCNLPAAAIHASSDTVVIVD--MNAPAAHI-ARHNWQPNTPD 1946
+ + + + + N P + A++ + V + A + A + W + P
Sbjct: 2343 PLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAVPAVITVTANRLFAVNKWH-SLPA 2401
Query: 1947 GQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH 2006
QG Q + G+G L S + S V +
Sbjct: 2402 HQGA---VQDQPYQLPVEIDPLIAC-----GTGTHRRQVTDLLD-QSIQVHSQCFVITSD 2452
Query: 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD---SN-FLVTGSQDTTI 2062
++ I+ G D S ++ ++D K ++ GH VTCLA S N ++++GS+D T+
Sbjct: 2453 NRHILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATL 2512
Query: 2063 LLWRIHRAFTSRTGTIEPSSGMGTP 2087
LLW +S G P S TP
Sbjct: 2513 LLW-YWNGKSSGIGD-NPGSETTTP 2535
|
|
| UNIPROTKB|E1C6E6 LRBA "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1034 (369.0 bits), Expect = 4.7e-101, Sum P(4) = 4.7e-101
Identities = 232/611 (37%), Positives = 330/611 (54%)
Query: 1475 IVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELR----NQEKDRSWLMS 1530
+ P+ +V P V++GT +T + F VD E P + + + WL S
Sbjct: 2058 VALSAPAQLVAPSVVVKGTLSITLSELYFEVDE-EDPSFKKIDPKILAYTEGLHGKWLFS 2116
Query: 1531 SLHQIXXXXXXXXXXALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARP------PHLND 1584
+ I ALE+FM +R F+F + + + P
Sbjct: 2117 EIRAIFSRRYLLQNTALEIFMANRVGVMFNFPDQATVKKVVNCLPRVGIGATFGLPQTRR 2176
Query: 1585 IYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYS 1644
I LA+ P Q+ K + + +RW EISNFEYLM LNT+AGR+YND+ QYP+FPW+L++Y
Sbjct: 2177 ISLAS--PRQIFKASHMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYE 2234
Query: 1645 SENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYY 1704
S+ LDL PS++RDLSKP+GALNP + F ERY S++D +PKFHYG+HYS+A L +
Sbjct: 2235 SDELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFALAW 2294
Query: 1705 LFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNE 1764
L R+EPFTTL + LQGGKFDHADR FS I+ W D SD+KEL+PE +YLPEI N
Sbjct: 2295 LLRIEPFTTLFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEIFVNS 2354
Query: 1765 NSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRG 1824
N+ + G G + V LPPWA+ P +F+ +R+ALES++VS LH+W+DLIFGYKQ+G
Sbjct: 2355 NNYNLGVMDDGTVVSDVELPPWAKTPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQG 2414
Query: 1825 KEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGD 1884
EA + NVF+Y+TYEG V++ I+DPV + A + QI FGQTPSQLL PH +
Sbjct: 2415 PEAARSLNVFYYLTYEGAVNLSSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRSSAMQ 2474
Query: 1885 VIHLQTIFRNPKEVKPYAVPVPERCNLPAAAIHASSD------TVVIVDMNAPAAHIARH 1938
V L + ++V + P N P + A++ V+ V N A H
Sbjct: 2475 VSPLMFTDQAQQDVI-MVLKFPS--NSPVTHVAANTQPGLTNPAVITVTANRLFAVNKWH 2531
Query: 1939 NWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRS 1998
N + Q P+ P + M + D+ S + S
Sbjct: 2532 NLPAHQGAVQDQPYQLP---VEIDPLIASNTGMHRRQITDLLDQ----------SIQVHS 2578
Query: 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD---SN-FLV 2054
V + ++ I+ G D S ++ ++D K ++ GH VTCLA S N +++
Sbjct: 2579 QCFVITSDNRYILVCGFWDKSFRVYSTDSGKLMQVIFGHWDVVTCLARSESYIGGNCYIL 2638
Query: 2055 TGSQDTTILLW 2065
+GS+D T+LLW
Sbjct: 2639 SGSRDATLLLW 2649
|
|
| UNIPROTKB|P50851 LRBA "Lipopolysaccharide-responsive and beige-like anchor protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1045 (372.9 bits), Expect = 5.4e-101, Sum P(4) = 5.4e-101
Identities = 233/604 (38%), Positives = 333/604 (55%)
Query: 1480 PSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELR----NQEKDRSWLMSSLHQI 1535
P+ +V P V++GT VT+ + F VD E P + + + WL + + I
Sbjct: 2083 PAQLVAPSVVVKGTLSVTSSELYFEVDE-EDPNFKKIDPKILAYTEGLHGKWLFTEIRSI 2141
Query: 1536 XXXXXXXXXXALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARP------PHLNDIYLAT 1589
ALE+FM +R F+F + + + P I LA+
Sbjct: 2142 FSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLAS 2201
Query: 1590 QRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLD 1649
P QL K + + +RW EISNFEYLM LNT+AGRSYND+ QYPVFPW++++Y SE LD
Sbjct: 2202 --PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELD 2259
Query: 1650 LANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVE 1709
L P+++RDLSKP+GALNP + F ERY S++D +PKFHYG+HYS+A VL +L R+E
Sbjct: 2260 LTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 2319
Query: 1710 PFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDF 1769
PFTT + LQGGKFDHADR FS I+ W D SD+KEL+PE +YLPE+ N N+ +
Sbjct: 2320 PFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 2379
Query: 1770 GTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAIS 1829
G G + V LPPWA+ +F+H +R+ALES++VS LH+W+DLIFGYKQ+G EA+
Sbjct: 2380 GVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 2439
Query: 1830 ANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQ 1889
A NVF+Y+TYEG V+++ I+DPV + A + QI FGQTPSQLL PH P G + +
Sbjct: 2440 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHP---PRGSAMQVS 2496
Query: 1890 TIFRNPKEVKPYAVPVPERCNLPAAAIHASSD----TVVIVDMNAPAAHIARHNWQPNTP 1945
+ K + + + N P + A++ T ++ + A A + W N P
Sbjct: 2497 PLMFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRL-FAVNKWH-NLP 2554
Query: 1946 DGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSIT 2005
QG + P L +G L S + S V +
Sbjct: 2555 AHQGAV----QDQPYQLPVEIDPLIA----SNTGMHRRQITDLLD-QSIQVHSQCFVITS 2605
Query: 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD---SN-FLVTGSQDTT 2061
++ I+ G D S ++ ++D + ++ GH VTCLA S N ++++GS+D T
Sbjct: 2606 DNRYILVCGFWDKSFRVYSTDTGRLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDAT 2665
Query: 2062 ILLW 2065
+LLW
Sbjct: 2666 LLLW 2669
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2342 | |||
| smart01026 | 280 | smart01026, Beach, Beige/BEACH domain | 1e-175 | |
| pfam02138 | 274 | pfam02138, Beach, Beige/BEACH domain | 1e-160 | |
| cd06071 | 275 | cd06071, Beach, BEACH (Beige and Chediak-Higashi) | 1e-148 | |
| cd01201 | 113 | cd01201, PH_BEACH, Pleckstrin homology domain in B | 3e-34 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-05 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 0.003 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.004 |
| >gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain | Back alignment and domain information |
|---|
Score = 535 bits (1380), Expect = e-175
Identities = 186/280 (66%), Positives = 221/280 (78%), Gaps = 2/280 (0%)
Query: 1602 MERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSK 1661
++W EISNFEYLM LNTLAGRSYND+TQYPVFPW+L+DY+SE LDL+NPS++RDLSK
Sbjct: 1 TQKWQNGEISNFEYLMHLNTLAGRSYNDLTQYPVFPWVLADYTSETLDLSNPSTFRDLSK 60
Query: 1662 PVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGG 1721
P+GALNP++L+ F ERY +DP IP FHYG+HYSSAG VLYYL R+EPFTTL +QLQGG
Sbjct: 61 PIGALNPERLEFFYERYEELEDPDIPPFHYGTHYSSAGIVLYYLIRLEPFTTLFLQLQGG 120
Query: 1722 KFDHADRMFSDIAATWNGV-LEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDS 1780
+FDHADR+F +AATW LE M+DVKEL+PE FYLPE L N N DFGT Q G +D
Sbjct: 121 RFDHADRLFHSVAATWRSASLESMTDVKELIPEFFYLPEFLVNINGFDFGTRQDGEDVDD 180
Query: 1781 VGLPPWAEN-PVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITY 1839
V LPPWA+ P +FI KHR ALES+YVS HLH W+DLIFGYKQRGKEA+ A NVF +TY
Sbjct: 181 VELPPWAKGSPEEFIRKHREALESEYVSQHLHHWIDLIFGYKQRGKEAVEALNVFHPLTY 240
Query: 1840 EGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKK 1879
EG VD+D I DPV+++A + QI FGQTP QL PH +
Sbjct: 241 EGAVDLDSIEDPVERKALEGQIHNFGQTPKQLFKEPHPPR 280
|
The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Length = 280 |
| >gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain | Back alignment and domain information |
|---|
Score = 494 bits (1273), Expect = e-160
Identities = 180/278 (64%), Positives = 218/278 (78%), Gaps = 4/278 (1%)
Query: 1602 MERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSK 1661
E+W EISNFEYLM LNTLAGRS+ND++QYPVFPW+L+DY+SE LDL +PS+YRDLSK
Sbjct: 1 TEKWQNGEISNFEYLMLLNTLAGRSFNDLSQYPVFPWVLADYTSETLDLNDPSTYRDLSK 60
Query: 1662 PVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGG 1721
P+GALN ++LKKF+ERY D+ P FHYGSHYSS G+VL+YL R+EPFTTL I+LQGG
Sbjct: 61 PIGALNEERLKKFKERYEELDEV-GPPFHYGSHYSSPGSVLHYLIRLEPFTTLHIELQGG 119
Query: 1722 KFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSV 1781
KFDHADR+FS I W V E M+DVKEL+PE FYLPE L N N+ D G G K+D V
Sbjct: 120 KFDHADRLFSSIEEAWKSVSESMNDVKELIPEFFYLPEFLKNINNFDLGKRD-GEKVDDV 178
Query: 1782 GLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEG 1841
LPPWA++P +F++K+R ALESDYVS +LH W+DLIFGYKQRG+EAI A NVF +TYE
Sbjct: 179 ELPPWAKSPEEFVYKNRKALESDYVSENLHNWIDLIFGYKQRGEEAIEAKNVFHPLTYED 238
Query: 1842 TVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKK 1879
V DKI DPV++ A + QI+ FGQTP QL T PH K+
Sbjct: 239 IV--DKIKDPVEREAIEAQISNFGQTPKQLFTEPHPKR 274
|
Length = 274 |
| >gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes | Back alignment and domain information |
|---|
Score = 459 bits (1183), Expect = e-148
Identities = 168/278 (60%), Positives = 211/278 (75%), Gaps = 3/278 (1%)
Query: 1602 MERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSK 1661
++W EISNFEYLM LNTLAGRS+ND++QYP+FPW++SDY+SE LDL +PS+YRDLSK
Sbjct: 1 TKKWQNGEISNFEYLMYLNTLAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSK 60
Query: 1662 PVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGG 1721
P+GALN ++L+ +ERY S D P FHYGSHYS+ VLYYL R+EPFTTL + LQGG
Sbjct: 61 PIGALNKERLQLLKERYESDSDDSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGG 120
Query: 1722 KFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSV 1781
FD ADR+F+ I ++W E+ SDVKEL+PE +YLPE N N DFG Q G K++ V
Sbjct: 121 HFDAADRLFNSIPSSWRSASENPSDVKELIPEFYYLPEFFLNINKFDFG-KQDGEKVNDV 179
Query: 1782 GLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEG 1841
LPPWA++P +FI KHR ALES+YVS +LH W+DLIFGYKQRG+EA+ A NVF +TYEG
Sbjct: 180 ELPPWAKSPEEFIRKHREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLTYEG 239
Query: 1842 TVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKK 1879
+VD+D I V++ A + QI FGQTP QL T PH K+
Sbjct: 240 SVDLDSID--VEREAIEAQINNFGQTPVQLFTKPHPKR 275
|
This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Length = 275 |
| >gnl|CDD|241237 cd01201, PH_BEACH, Pleckstrin homology domain in BEACH domain containing proteins | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-34
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 1473 ERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEK----DRSWL 1528
E+I+ S+V PL VI GT +TT + F+ D +S + + K W
Sbjct: 1 EKILLSTNCSLVTPLDVIPGTLLITTTHLYFVDDEDDSEDGKIVSQKVLSKGEHLVFKWS 60
Query: 1529 MSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPH 1581
+S + +++ RRYLLR +ALE+F+ D N+F +F S R Y ++ PP+
Sbjct: 61 LSEIREVHKRRYLLRPTALEIFLADGRNYFLNFPSQSDRDKVYSKLLSLLPPN 113
|
The BEACH domain is present in several eukaroyotic proteins CHS, neurobeachin (Nbea), LRBA (also called BGL, beige-like, or CDC4L), FAN, KIAA1607, and LvsA-LvsF. CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in mammals and beige is the name for the CHS disease in mice. The CHS disease is associated with the presence of giant, perinuclear vesicles (lysosomes, melanosomes, and others) and CHS protein is thought to play an important role in the fusion, fission, or trafficking of these vesicles. All BEACH proteins contain the following domains: PH, BEACH, and WD40. The WD40 domain is involved in mediating protein-protein interactions involved in targeting proteins to subcellular compartments. The combined PH-BEACH motifs may present a single continuous structural unit involved in protein binding. Some members have an additional N-terminal Laminin G-like (LamG) domains Ca++ mediated receptors or an additional C-terminal FYVE zinc-binding domain which targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-16
Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 17/188 (9%)
Query: 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ 2058
V + + +G D +I+L + + + T +GH + V+ +A S D L + S+
Sbjct: 55 RDVAASADGTYLASGS-SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113
Query: 2059 DTTILLWRIH-----RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR---RRIE 2110
D TI +W + T + +S +P + +S +S D + + R
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWV--NSVAFSPDGTFVAS----SSQDGTIKLWDLRTG 167
Query: 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDA--HAVSL 2168
+ L GH E+ S D ++S S + L + G+ + L G + ++V+
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227
Query: 2169 SSEGVIMT 2176
S +G ++
Sbjct: 228 SPDGYLLA 235
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 69/317 (21%), Positives = 105/317 (33%), Gaps = 68/317 (21%)
Query: 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---TIEPSSGMGTP-G 2088
T GH VTC+A S D L TGS D TI +W + RT T + G
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 2089 NSIGSSTPANASADKSRRR---RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLL 2145
+ S S+DK+ R + L GH + S D ++ S S +
Sbjct: 64 TYLAS-----GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 2146 LHSIRRGRLIRRLVG------------VDAHAVSLSSEGVIMTWN----KLQHTLSSFTL 2189
+ + G+ + L G S S +G I W+ K TL+ T
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT- 177
Query: 2190 NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS-------------TNNGSYDNIQG 2236
G + + S DG L + + T G + +
Sbjct: 178 -------------GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224
Query: 2237 LNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296
+ G L + S D +I DL T + L G +T+LA +
Sbjct: 225 VAFSPDG----YLLASGSEDG--------TIRVWDLRTGECVQTLS-GHTNSVTSLAWSP 271
Query: 2297 DNTNLLVSTADKQLIVF 2313
D L +AD + ++
Sbjct: 272 DGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 58/203 (28%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW---- 2065
+ TG DG+IK+ + + L T GH PV +A S+D +L +GS D TI LW
Sbjct: 24 LATGSG-DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82
Query: 2066 -RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR---RRIEGPIHVLRGHHR 2121
R T T + SS +P I SS +S DK+ + + LRGH
Sbjct: 83 GECVRTLTGHTSYV--SSVAFSPDGRILSS----SSRDKTIKVWDVETGKCLTTLRGHTD 136
Query: 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSL----------S 2169
+ S D V S S + L +R G+ + L G + ++V+ S
Sbjct: 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196
Query: 2170 SEGVIMTWN----KLQHTLSSFT 2188
S+G I W+ K TL
Sbjct: 197 SDGTIKLWDLSTGKCLGTLRGHE 219
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.6 bits (153), Expect = 7e-10
Identities = 65/306 (21%), Positives = 115/306 (37%), Gaps = 20/306 (6%)
Query: 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGS 2057
+++ K + +G +DG+IKL K L T +GH PV+ LA S D + +GS
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218
Query: 2058 QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR----RRIEGPI 2113
D TI LW + T+ S S S A+ S+D + R R +
Sbjct: 219 SDGTIRLWDL-STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL 277
Query: 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAH-----AVSL 2168
L GH +L S D ++ S S + L + G+L+ L + H ++S
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL-TLKGHEGPVSSLSF 336
Query: 2169 SSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227
S +G ++++ T+ + L + L G + +S ++ S+
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTG---KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP---SPSICFLDLHTLKVFHVLKLG 2284
+D G + + S + + +I DL T + V
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT-SLKSVSFSP 452
Query: 2285 EGQDIT 2290
+G+ +
Sbjct: 453 DGKVLA 458
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-09
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 42/140 (30%)
Query: 2002 VSITHD-KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT 2060
V+ + D +++++ DG+IKL K L T GH V +A S D L +GS+D
Sbjct: 183 VAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241
Query: 2061 TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH 2120
TI +W + RTG + L GH
Sbjct: 242 TIRVWDL------RTGE----------------------------------CVQTLSGHT 261
Query: 2121 REILCCCVSSDLGVVVSCSD 2140
+ S D + S S
Sbjct: 262 NSVTSLAWSPDGKRLASGSA 281
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-09
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
V+ + D ++ G DG+I++ + ++T SGH VT LA S D L +GS D T
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
Query: 2062 ILLWR 2066
I +W
Sbjct: 285 IRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.1 bits (144), Expect = 8e-09
Identities = 59/268 (22%), Positives = 99/268 (36%), Gaps = 44/268 (16%)
Query: 1994 SGIRSSAVVSITHDKEIITGGHVDGSIKLL-TSDGAKTLETASGHCAPVTCLALSSDSNF 2052
SG S V S + D ++ G DG+I+L + L T SGH + V +A S D
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298
Query: 2053 LVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112
L +GS D T+ LW +
Sbjct: 299 LASGSSDGTVRLWDL--------------------------------------ETGKLLS 320
Query: 2113 IHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLIRRLVGVDA-HAVSLSS 2170
L+GH + S D +V SD + L +R G+ ++ L G +VS S
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP 380
Query: 2171 EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230
+G +++ T+ + L+ + R + + ++ S DG S G SS N
Sbjct: 381 DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG---SSDNTIR 437
Query: 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNN 2258
+++ S + D + + +S D +
Sbjct: 438 LWDLKTSLKSVSFSPDGKVLASKSSDLS 465
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
K L T GH PVT +A S D N L +GS D T+ +W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+ L+T GH PVT +A S D +L +GS D TI LW
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.2 bits (113), Expect = 5e-05
Identities = 66/325 (20%), Positives = 112/325 (34%), Gaps = 17/325 (5%)
Query: 2016 VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH--RAFTS 2073
+ L S + GH +T +A S D L++GS D TI LW +
Sbjct: 43 LALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK 102
Query: 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE------GPIHVLRGHHREILCCC 2127
+ SS +S ++ AS+ ++ I L GH +
Sbjct: 103 SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLA 162
Query: 2128 VSSDLGVVVSCSDSSDLL-LHSIRRGRLIRRLVG----VDAHAVSLSSEGVIMTWNKLQH 2182
S D ++ S S + L +R G+ + L G V + A S +I + +
Sbjct: 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS-DG 221
Query: 2183 TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS 2242
T+ + L+ + R+ L S DG G + + + L S
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281
Query: 2243 GTEDFDLASDQSVDNNRFDFPSP--SICFLDLHTLKVFHVLKL-GEGQDITALALNKDNT 2299
G L+ S D S ++ DL T K+ L L G +++L+ + D +
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341
Query: 2300 NLLVSTADKQLIVFTDPALSLKVVD 2324
L+ +D I D +
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKT 366
|
Length = 466 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.003
Identities = 32/150 (21%), Positives = 49/150 (32%), Gaps = 14/150 (9%)
Query: 1098 AADSLPLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSLLE 1157
A P+ A ++ + A +A A DAP A R +
Sbjct: 443 ADGDAPVPAKANARASADSRC-DERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSA 501
Query: 1158 RKQTRL---YTFSSFQKTSEVTNKSSPLPKDKASAKAAALAAAR--------DLERNA-- 1204
+ ++ + + P P+ + AAA AAR D+ RNA
Sbjct: 502 ATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGM 561
Query: 1205 KIGSGRGLSAVAMATSAQRRNASDTERVER 1234
++ S RG A A A A A+ R
Sbjct: 562 RVSSDRGARAAAAAKPAAAPAAAPKPAAPR 591
|
Length = 830 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148
+ L+GH + S D + S SD + L
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2342 | |||
| KOG1787 | 1126 | consensus Kinase A-anchor protein Neurobeachin and | 100.0 | |
| cd06071 | 275 | Beach BEACH (Beige and Chediak-Higashi) domains, i | 100.0 | |
| PF02138 | 270 | Beach: Beige/BEACH domain; InterPro: IPR000409 The | 100.0 | |
| KOG1786 | 1081 | consensus Lysosomal trafficking regulator LYST and | 100.0 | |
| KOG1787 | 1126 | consensus Kinase A-anchor protein Neurobeachin and | 100.0 | |
| KOG1786 | 1081 | consensus Lysosomal trafficking regulator LYST and | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.98 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.96 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.94 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.93 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.93 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.93 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.92 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.92 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.92 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.91 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.91 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.9 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.9 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.9 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.89 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.89 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.88 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.88 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.88 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.88 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.88 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.88 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.88 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.87 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.87 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.87 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.87 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| PTZ00421 | 493 | coronin; Provisional | 99.87 | |
| PTZ00421 | 493 | coronin; Provisional | 99.87 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.86 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.85 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.85 | |
| PTZ00420 | 568 | coronin; Provisional | 99.85 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.85 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.85 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.84 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.84 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.84 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.83 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.82 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.82 | |
| PTZ00420 | 568 | coronin; Provisional | 99.82 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.81 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.81 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.8 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.8 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.79 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.79 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.79 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.78 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.78 | |
| cd01201 | 108 | Neurobeachin Neurobeachin Pleckstrin homology-like | 99.78 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.77 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.77 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.77 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.77 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.77 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.76 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.76 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.75 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.74 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.74 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.73 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.73 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.72 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| PF06469 | 169 | DUF1088: Domain of Unknown Function (DUF1088); Int | 99.71 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.71 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.7 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.7 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.69 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| PF14844 | 106 | PH_BEACH: PH domain associated with Beige/BEACH; P | 99.68 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.68 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.68 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.67 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.67 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.66 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.65 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.65 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.65 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.65 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.63 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.62 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.61 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.61 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.61 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.61 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.6 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.59 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.57 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.57 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.56 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.55 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.55 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.55 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.53 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.52 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.52 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.51 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.5 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.5 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.48 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.48 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.46 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.46 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.41 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.41 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.41 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.39 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.38 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.38 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.37 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.35 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.34 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.34 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.33 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.31 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.3 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.3 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.3 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.29 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.27 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.26 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.21 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.2 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.19 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.19 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.17 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.16 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.14 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.14 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.14 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.14 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.13 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.12 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.12 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.12 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.12 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.11 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.1 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.1 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.07 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.07 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.07 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.06 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.03 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.01 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.99 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.98 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.97 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.95 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.95 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.94 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.94 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.92 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.9 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.9 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.89 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.89 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.89 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.87 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.86 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.85 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.85 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.84 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.82 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.82 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.81 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.81 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.79 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.79 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.73 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.72 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.72 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.69 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.63 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.6 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.57 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.54 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.54 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.53 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.5 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.5 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.47 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.42 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.42 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.38 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.37 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.35 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.32 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.27 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.25 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.24 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.23 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.22 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.22 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.2 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.2 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.18 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.17 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.12 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.09 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.07 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.04 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.99 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.98 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.92 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.91 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.86 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.84 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.82 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.82 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.81 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.78 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.7 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.69 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.67 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.65 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.61 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.59 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.57 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.54 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.5 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.46 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.43 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.41 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.4 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.35 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.33 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.31 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.27 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.27 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.25 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.23 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.19 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.17 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.1 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.1 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.07 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.05 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.02 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.01 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.98 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 96.98 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.92 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.77 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.74 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.73 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.61 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.61 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.57 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.56 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.54 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.5 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.47 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.39 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.25 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.02 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 96.01 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.97 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.96 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 95.89 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.87 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.85 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.78 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.64 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.58 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.51 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.34 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.24 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.23 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.2 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.86 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 94.84 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 94.66 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.6 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.54 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.51 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.35 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.01 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 93.68 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.51 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.41 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 93.36 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.61 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 92.44 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 92.34 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 91.96 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 91.94 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 91.55 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 91.45 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 91.4 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 91.17 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 91.11 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 90.97 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 90.96 | |
| PRK10115 | 686 | protease 2; Provisional | 89.59 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 89.47 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 89.38 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 89.27 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 89.1 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 88.94 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 88.49 | |
| PF02893 | 69 | GRAM: GRAM domain; InterPro: IPR004182 The GRAM do | 88.44 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.33 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 87.03 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 86.38 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 85.9 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 85.81 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 85.79 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 84.92 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 84.81 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 84.43 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 84.05 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 81.71 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 81.53 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 81.41 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 81.21 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 80.1 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 80.07 |
| >KOG1787 consensus Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-131 Score=1290.43 Aligned_cols=974 Identities=40% Similarity=0.523 Sum_probs=818.1
Q ss_pred ccceeeeeccccccCCCccchhhhhhhhhhhhhccCCCccCccccccccccccccccccccccccccccccccchhhhhc
Q 000085 626 HNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRTRREESLPLFKRRLLGGLLDFATRELQVQTQVIAAAA 705 (2342)
Q Consensus 626 ~~~~~i~~e~~~~~k~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~ee~~p~~~r~~~~~~l~~~~~~~~~~~~~~~~~~ 705 (2342)
++++.|++|+++++ +..+.|||++|+..+||.+++..|++.+++.++++|++|++.|+++.+++++++++++++.
T Consensus 1 ~~~~~~~~~~ss~~-----~~~~~i~~~~~l~~~~~~~~~~~r~~~~~sq~~~rr~l~t~~l~~a~~~~~~~~~~~~~a~ 75 (1126)
T KOG1787|consen 1 HNGLNIMLEHSSRD-----AAAADIPCSSWLGPSGGQSAGEVRIRLEVSQAALRRVLLTGLLDSALSELQAQLRVIAAAA 75 (1126)
T ss_pred CchhhhhccchhHH-----HHhhccccccccccccccccccceecccccchHHHHHHhhcchHHHHHhhhhhhHHHHHHH
Confidence 57899999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhHHHHhhccccccccccceeeeeeeehhhhcccccccccccCCCCCCCcccccCCCCCCCccccccc
Q 000085 706 AGVAAEGLPPKDAKAEARNAAQLSVALVENAIVILMLVEDHLRLQSKLSCASRKKDASPSPLSLVSPLNNHSSLSASIGA 785 (2342)
Q Consensus 706 ~~~~~~~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~l~e~~l~~~~~~~~~~~~~~~~~~p~s~~s~~~~~~~~~~~~~~ 785 (2342)
+|.+.+++.|+.+|...++.+++++-+++|.+|++|+.++|++.+....|+.+...-.+.+.+.+++.+......++.+.
T Consensus 76 a~~~~~~l~~~~~~~~~~~~~~l~~~~~~~t~vi~~~~~~~~~~~q~~~~~~~~~~~i~~v~e~~~~~~~~~~~~~~~~~ 155 (1126)
T KOG1787|consen 76 AGEKCSRLLPSVATLGLEMDAQLSVLRVENTVVILLPSELHLRDQQKFCQKHSAVACVPSVNEPFLSTNDGAVYALRSGL 155 (1126)
T ss_pred HHhhhhhhcccchhhHhhhccccceeeeccccccccchHHHHHHHHHHHHHHHHHHhhhhcccccccccccceeeccccc
Confidence 99999999999999999999999999999999999999999999999888888888999999999999999999999999
Q ss_pred ccccccCCcc---cCCCCCCcccccccccccCcchHHHHHHHHHhhhcCCCccceeeeeeccchhhhhcccccccccccc
Q 000085 786 ESLDSLGDRR---SDSSGLPLDVLASMADANGQISAAVMERLTAAAAAEPYESVSCAFVSYGSCAMDLAEGWKYRSRLWY 862 (2342)
Q Consensus 786 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (2342)
+. |..++|. .++||.+.|.++.|+++.|||++.+|||+|+|+++|||++|.|+|+.||+|.+|++++|+|++++ |
T Consensus 156 ~~-e~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~r~~~~v~~~~~~~~~~~~d~~~~w~~~~~~-~ 233 (1126)
T KOG1787|consen 156 ES-EFSSSRASASSVSGGVMLDILALMALASGQISAEVAERLTAAARLRTYASVTQLFTKIGMLLTDLGAQWRDLSHS-L 233 (1126)
T ss_pred hh-hhhhccchhhhccCCchhhhhhhhhhcccchhHHHHHHHHHHhhcccccchHHhhhhHHHHHHHHHHHHHhhccc-c
Confidence 98 8888777 89999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccCCCCcccccCCCccccccccccccCCCCCeEEeccchhhHHHHHHhhccccCCCCcccccCCCCCcchHHHHHHHHh
Q 000085 863 GVGLPSKSSEIGGGGSGWDSWNSSLEKDANGNWIELPLVKKSVSMLQALLLDESGLGGGLGIGGGSGTGMGGMAALYQLL 942 (2342)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (2342)
|+ +|+..||+|+.+|+.|+...++++|++|+++|++++++.|.++++||+ |||++||+|++|+|++|..++|..
T Consensus 234 ~~---s~~~~f~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~t~~~~~~~~~~~~ 307 (1126)
T KOG1787|consen 234 SR---SKKALFGEGENFSDIVSRLNENLRNANGLEHPEAKLNVGEKQLLLLDE---GGKLTIGIGSQTGKSLLSQATQNQ 307 (1126)
T ss_pred cc---chhhhccCccchHHHHHhhhhccccccccchhhhhhhhhhhhcccccc---ccccccccccccccchhhhhhcCC
Confidence 98 899999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhhccccCCCCchhhccchhhhhhcccCccccccccccCcccccccCCCCcchhhhhhhcccccCC
Q 000085 943 DSDQPFLCMLRMALLSMREEDNGEDSMFMRNVNMEDEMSEGLHRHASNIGSLDNSALLSTRKPRSALLWSVLSPVLNMPI 1022 (2342)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (2342)
+++||+.||+||.++++|+|+.+|+.+++++++....... +-|+.|++.+.+++...+++.-.+|+.|+++.|+++||.
T Consensus 308 ~s~~~~~~~~~~~~l~~~~ek~~~~~~~~~~lss~~~~~~-~~~t~~~~~~~~~~s~~~~~es~~a~~~~~l~~l~~~~~ 386 (1126)
T KOG1787|consen 308 NSDQELLLLLRMDLLSLRQEKDIENSSLSEVLSSPANTIA-LEVTLGNLSSVDSESELSMRESPSASKKSLLKPLAYLEE 386 (1126)
T ss_pred CccchhhhhhhhhhhhccccccccccccceeeeccCCccc-eeeeccceeeecchhhhhhhcCchHHHHHhhhHHhcCcc
Confidence 9999999999999999999999999999999999998888 999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhhhheeeehhhhhhhccchhhHHHHHhhcCCchhhhhhhccccccccccccccCCCCcccccccccccccc
Q 000085 1023 SDSKRQRVLVASCVLYSEVWHSVSRDRKTLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLILDDRALAADSL 1102 (2342)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1102 (2342)
...||+++++.+|.+|+++||+++.|..||+++|++.+.|+|.+|.|+|+++.+++|++... ++++++++++
T Consensus 387 ~~~k~~~~~~~a~~~~~~~~~~~~~~~~~l~~t~l~~~~p~~~~v~~~~~~l~~~~v~~~~g-----~~~~~~~~~~--- 458 (1126)
T KOG1787|consen 387 LHGKRLLELISAQFLQSILLHNISLDVFPLRRTSLMFESPSQDAVKRSGLLLPALGVLTSVG-----LVLPQRRLIS--- 458 (1126)
T ss_pred ccchHHHHHHHHHHHHHHhccchhhhHHHHHhhhhhhccCCccchhcccccccceeeeeecc-----ccccchhhhh---
Confidence 99999999999999999999999999999999999999999999999999999999765331 0000000000
Q ss_pred cHHHHHhhcChhhHhhhcCChHHHHHHHHHhcccCCCCCCCCccccccccccHHHhhhcceeecccccccccccCCCCCC
Q 000085 1103 PLEAAIAMISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSLLERKQTRLYTFSSFQKTSEVTNKSSPL 1182 (2342)
Q Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1182 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHHHHHhhHHHhhccCCCCCchHHhhhhhhhhcccccccccccccchhHHHHHHHHhcccccccccccccc
Q 000085 1183 PKDKASAKAAALAAARDLERNAKIGSGRGLSAVAMATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGKDF 1262 (2342)
Q Consensus 1183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~w~~c~~~~~~~~~~~r~~ 1262 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcceeEeec
Q 000085 1263 NALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFWKLDF 1342 (2342)
Q Consensus 1263 ~e~~~k~~~~~v~~~~lar~~~R~E~~r~~~l~~~~~~r~~~a~r~W~ki~~~Lt~ERGlwGPw~~~~~s~~~~fWKLD~ 1342 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccceeecccCCCCCCccccccchhhcccCCCCCccCCCCCchhhHHHhhcccccCCccccccCCcccccccccCC
Q 000085 1343 MESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAISMEAVNEDDEQTENDNLDDRVYNLDN 1422 (2342)
Q Consensus 1343 tEd~sRMRrRLvRNy~fs~H~~Aaa~~e~~~~~~~~~~~~~~~~~~~i~~aeais~~~~~ed~e~~~~e~l~d~~~~~~~ 1422 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccchHHHHHHhhhccCCCCCCCCccccccccccccCCCCCCCCCCceEEEEeeeeEeeeeeeeEEEEEEEeeEEE
Q 000085 1423 VGEDQTTVSEKIEQTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVTTRRIN 1502 (2342)
Q Consensus 1423 ~~ed~~~~se~~~~~l~~s~~s~~~~~s~dq~l~~~~~~i~pg~~~~e~~EkVils~~c~mVtPl~v~~G~L~IT~~~Ly 1502 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCCCCCccccccccceEeeccceeEEeeccccCcccEEEEEEeCCceEEEEcCChhhHHHHHHHHHhcCCCCC
Q 000085 1503 FIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPHL 1582 (2342)
Q Consensus 1503 F~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~~~~~i~~~~~~~~ 1582 (2342)
T Consensus 459 -------------------------------------------------------------------------------- 458 (1126)
T KOG1787|consen 459 -------------------------------------------------------------------------------- 458 (1126)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccChHHHHHHHHHHHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCc
Q 000085 1583 NDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKP 1662 (2342)
Q Consensus 1583 ~~~~~~~~~~~~~~~~~~~t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKP 1662 (2342)
...|.++++.+++|++|+.|+||||+|+|.||+.|||||||++|||||||++.||.++++|++.+.+||||+||
T Consensus 459 ------~~~P~qm~k~~~~t~~w~~~~~s~~~~l~~l~t~agrsyndl~qypvfpwvl~dy~s~~ld~s~~~~frdlsKp 532 (1126)
T KOG1787|consen 459 ------AATPVQMAKNSGITQEWQAREISNFEVLMQLNTSAGRSYNDLTQYPVFPWVLRDYSSETLDLSKLSTFRDLSKP 532 (1126)
T ss_pred ------hhCHHHHHHhcCccHHHHhhccccHHHHHHHHhccCcccCccccCCCCCeeeecccchhhhcccchhHHhhcCc
Confidence 00033444555668899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhccCCCCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhc
Q 000085 1663 VGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLE 1742 (2342)
Q Consensus 1663 iGal~~~r~~~~~~ry~~~~d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~ 1742 (2342)
||++|++|...|.+||++++|+.+|.||||+|||+++.|++||+|+||||++|+++|+|+|||+||.|+|+...|++|+.
T Consensus 533 igaln~~~~~~f~dry~s~~D~~i~~~~~~thys~~~~~l~~l~rvepf~S~~~~l~~gkfd~~dr~~~sv~~~~r~~l~ 612 (1126)
T KOG1787|consen 533 IGALNPKRAYLFRDRYESFEDQAIPSFHYGTHYSSAANVLAYLLRVEPFTSLHLQLQDGKFDHADRAFSSVASSWRRCLR 612 (1126)
T ss_pred ccCCCcccchhHhhhhhccccccccccccccccccccceeeeeeecCccccccccccccccccchhhHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccccccccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccc
Q 000085 1743 DMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQ 1822 (2342)
Q Consensus 1743 ~~~dvkELIPEfFy~Pefl~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDLIFGyKQ 1822 (2342)
+.+|||||||||||+||+|.|.|.+++|.+++|+.|.||.|||||++|++|+..||+||||+|||.++|+||||||||||
T Consensus 613 d~sdvkelipeffy~p~ll~~~~~~~lg~~~dg~~vi~v~lppwa~~pe~f~~~nr~aLes~fvs~~l~~widlifg~Kq 692 (1126)
T KOG1787|consen 613 DTSDVKELIPEFFYFPELLVNSNLYNLGVRVDGEPVIDVVLPPWAKSPEDFETRNREALESEFVSCQLHQWIDLIFGYKQ 692 (1126)
T ss_pred chhhHHHhhhHHHHHHHHHhccccccceeecCCccceeeecccccCCHHHHHHHHHHHhhccccccccchhHHhhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCccccccccccccccccCCCHHHH-HHHHHHHHHcCCCcccccccCCCCCCCCCccccccc-cccCC----C
Q 000085 1823 RGKEAISANNVFFYITYEGTVDIDKISDPVQQ-RAAQDQIAYFGQTPSQLLTVPHMKKMPLGDVIHLQT-IFRNP----K 1896 (2342)
Q Consensus 1823 ~G~~Av~a~Nvf~~~tY~~~vd~~~i~d~~~~-~~~~~~i~~fGq~P~QLF~~pHp~R~~~~~v~~~~~-if~np----~ 1896 (2342)
+|++|++|.||||++||||+++++.++|+.++ .+++.||.+|||||.|+|.++||+|.+.....+.+. .|..- .
T Consensus 693 ~g~ea~~a~nvf~~~tyeG~v~~~~~~d~~~~~eai~~~i~~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~ 772 (1126)
T KOG1787|consen 693 RGPEAVRAMNVFYYLTYEGAVDLDSITDQVLRTEAIEAQIASFGQTPSQLLQEQHPPRASESKLALPSALVFEDASQLDV 772 (1126)
T ss_pred cCHHHHHhhhhhccCCccccccccccCChhHHHHHHHHHHhhccccchhhhhhccCCcchhccccccccchhhhhhhhhh
Confidence 99999999999999999999999999999999 799999999999999999999999976543322111 11100 0
Q ss_pred CccccccCCc-cccCCCcccccccCCcEEEEecCCccceeeecccCCCCCCC--------CCCceeec-----CCCeEEe
Q 000085 1897 EVKPYAVPVP-ERCNLPAAAIHASSDTVVIVDMNAPAAHIARHNWQPNTPDG--------QGTPFLFQ-----HGKASAS 1962 (2342)
Q Consensus 1897 ~lK~~~vp~p-e~~n~p~s~I~~SsDsVV~Vd~N~~~~~la~~kW~p~t~dg--------~~s~flf~-----~Gk~LaS 1962 (2342)
.+++....++ .....+.......-++++.++.+ ..+..+.|++....+ ...+-+++ +.....+
T Consensus 773 ~~~~~~~s~s~~~v~aan~~~~~~~~~~~~~~~~---~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 849 (1126)
T KOG1787|consen 773 GIVLKRPSNSSVVVVAANTLFELCQPTVLGVRSL---LEFPRNISSPSVVVKRATEALRGARGSHLDQIPLATDEPLQLT 849 (1126)
T ss_pred hhccccCCCCcceeecccccccccccceeeeeee---EEeehhccccchhhhhhhHhhccCCccccccccccccchhhhh
Confidence 0111100000 00000000001111223322222 123445566521111 00000000 0000000
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeE
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT 2042 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt 2042 (2342)
.+.. .+-.|... ...+| ...+.....+.++...-....|.++..-+|+...++...+.-.+|.+.|+
T Consensus 850 ~~~~-~v~r~~~~---~~~~~---------~~l~~~~~~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~~~d~~vv~ 916 (1126)
T KOG1787|consen 850 ASNQ-FVARRLRD---DISDQ---------SYLVQLNLFVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSVFRDGDVVT 916 (1126)
T ss_pred hccc-eehhhccc---chhhe---------eeeeecceEEEeccCccccccCccccccceEeeehhhhccccccccceee
Confidence 1111 11111100 00011 11122223344444444566666777767777667777777888999999
Q ss_pred EEEecCC----CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2043 CLALSSD----SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2043 cLAfSPD----G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
|++.++. ..+.++++.|++|..|-+..- +..|..+..+.. ..+...+.+
T Consensus 917 ~~ar~~~~l~~~~~~~s~s~D~tI~~~~~s~~-------------------~~~g~~~~~~s~--------~~e~~~lt~ 969 (1126)
T KOG1787|consen 917 CGARLEQYLAALQYPVSSSEDGTIPLLYWSHI-------------------SSIGDIVVSGSA--------PEEFTTLTG 969 (1126)
T ss_pred eeecccccccccccccccCCCcceeeeeeccc-------------------cccccccccccc--------cCccchhee
Confidence 9999874 467999999999999987620 011111111111 134556677
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
|.....+...++....++.++.++...+..+.
T Consensus 970 ~~~~~~~~~~~~~~s~v~~~~~~~~~~i~~~~ 1001 (1126)
T KOG1787|consen 970 QEASGKFSLVDAELSLVISGAKGGLCLIHLVG 1001 (1126)
T ss_pred cccceeeeecchhhhhhhhhcccccceeeeec
Confidence 77777777777777778888888877777753
|
|
| >cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-96 Score=858.71 Aligned_cols=275 Identities=61% Similarity=1.089 Sum_probs=268.2
Q ss_pred HHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHHHHHHHhccC
Q 000085 1602 MERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSF 1681 (2342)
Q Consensus 1602 t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~~~~~ry~~~ 1681 (2342)
|++|++|+||||||||+||.+|||||||++||||||||++||+|+++||+|+.+||||+|||||||++|++.+++||+++
T Consensus 1 T~~W~~g~iSNfeYL~~LN~~sGRSf~D~sqYPIfPWvi~dy~s~~ldl~~~~~~RDLskpigal~~~r~~~~~~~~~~~ 80 (275)
T cd06071 1 TKKWQNGEISNFEYLMYLNTLAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQLLKERYESD 80 (275)
T ss_pred CchhhcCCccHHHHHHHHHHHhCCCCCCcccCCccCeeecCCCCcccccCCcccccCCCCchhhcCHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhcCCCCccccccccccccccc
Q 000085 1682 DDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEIL 1761 (2342)
Q Consensus 1682 ~d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~~~~dvkELIPEfFy~Pefl 1761 (2342)
.....++||||+|||++++|++||+|+||||++|+.||+|+||+|||||+||.++|++++++++|++||||||||+||||
T Consensus 81 ~~~~~~~~~y~shyS~~~~V~~yLvR~ePft~~~~~lq~g~fd~~~RlF~si~~~~~~~~~~~~d~~ELIPEFf~~Pe~f 160 (275)
T cd06071 81 SDDSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWRSASENPSDVKELIPEFYYLPEFF 160 (275)
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHhHcCCccHHHHHHhcCCcCCcccchhhHHHHHHHHHccCCCcccCCchHhcCHHHH
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchhhhhcCcccccccccc
Q 000085 1762 TNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEG 1841 (2342)
Q Consensus 1762 ~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~Nvf~~~tY~~ 1841 (2342)
+|.|+++||+ |+|+.++||+||+||++|++||++||+||||+|||+|||+||||||||||+|++|++|.|||||++|++
T Consensus 161 ~N~n~~~lg~-~~g~~~~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~~ 239 (275)
T cd06071 161 LNINKFDFGK-QDGEKVNDVELPPWAKSPEEFIRKHREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLTYEG 239 (275)
T ss_pred hCCCcccccc-cCCCcccceecCCCcCCHHHHHHHHHHHHcccHhhhhhhhhhhhhcccccCCHHHHHhcCCCcccccCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000085 1842 TVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKK 1879 (2342)
Q Consensus 1842 ~vd~~~i~d~~~~~~~~~~i~~fGq~P~QLF~~pHp~R 1879 (2342)
.++.+.+. .++.++++++.+|||+|.|||++|||+|
T Consensus 240 ~~~~~~~~--~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 275 (275)
T cd06071 240 SVDLDSID--VEREAIEAQINNFGQTPVQLFTKPHPKR 275 (275)
T ss_pred ccccchhh--HHHHHHHHHHHhcCCCcchhccCCCCCC
Confidence 98766544 7899999999999999999999999998
|
This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. |
| >PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-92 Score=832.56 Aligned_cols=270 Identities=62% Similarity=1.112 Sum_probs=200.2
Q ss_pred HHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHHHHHHHhccC
Q 000085 1602 MERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSF 1681 (2342)
Q Consensus 1602 t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~~~~~ry~~~ 1681 (2342)
|++|++|+||||||||+||.+|||||||++||||||||++||+|+++||+|+.+||||+|||||||++|+++++++|+++
T Consensus 1 T~~W~~g~iSNfeYL~~LN~~aGRSf~D~sqYPIFPWv~~dy~s~~ldl~~~~~~RdLskPiga~~~~r~~~~~~~~~~~ 80 (270)
T PF02138_consen 1 TEKWQNGEISNFEYLMYLNILAGRSFNDLSQYPIFPWVISDYDSEELDLNDPSNYRDLSKPIGAQNEERLEKLKERYEEM 80 (270)
T ss_dssp HHHHHTTSS-HHHHHHHHHHHCT--TT-GGG---B---B---SSSS--TT-GGGB--TTS-HHHCSHHHHHHHHHHHHC-
T ss_pred CcchhcCCCcHHHHHHHHhHHhccCCCCCccCccccchhccCCccccccCCccccccccccccccCHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhcCCCCccccccccccccccc
Q 000085 1682 DDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEIL 1761 (2342)
Q Consensus 1682 ~d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~~~~dvkELIPEfFy~Pefl 1761 (2342)
++. .++||||+|||++++|++||+|+||||++|+.||+|+||++||+|+||.++|++++++++|++||||||||+||||
T Consensus 81 ~~~-~~~~~y~s~ys~~~~v~~~L~R~ePft~l~~~lq~g~fD~~~r~F~SI~~~~~~~~~~~~d~~EliPEff~~Pe~f 159 (270)
T PF02138_consen 81 EEF-EPPFHYGSHYSSPGTVLYYLVRLEPFTSLHIDLQSGKFDVPDRLFSSIEDTWNSVTENMNDVKELIPEFFYLPEFF 159 (270)
T ss_dssp -SS-S---SBSS-SS-HHHHHHHTTTSTTHHHHHHHCCTTS---CCCSS-BHHHHHHHHHH-TT----B-GGGGT-GGGG
T ss_pred hcc-CCCccccCCCCCcchhhhhhcccChHHHHHHHHhccccCCchHHHHHHHHHHHHhhcCCccccccChhhhCCHHHh
Confidence 543 3799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchhhhhcCcccccccccc
Q 000085 1762 TNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEG 1841 (2342)
Q Consensus 1762 ~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~Nvf~~~tY~~ 1841 (2342)
.|.|+|+||+ |+.|+||+||+||++|++||++||+||||+|||++||+||||||||||+|++|++|.|||||++|++
T Consensus 160 ~N~n~~~~g~---~~~~~dV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~~ 236 (270)
T PF02138_consen 160 KNINNFDLGK---GEDVDDVELPPWAKSPFEFVYKHRKALESDYVSQNLHHWIDLIFGYKQRGKEAVEAKNVFHPLTYED 236 (270)
T ss_dssp S-TT-SS--B---S-B-SS-B--TT-SSHHHHHHHHHHHHCSHHHHTTHHHHHHHHTSCCCSCHHHHHTT--B-CCCSTT
T ss_pred cccccccccC---CCccceeecCCccchHHHHHHHHHHHHhhhHHHhhhhHHHHHhhCcccccHHHHHHhhcccccCCCc
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000085 1842 TVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKK 1879 (2342)
Q Consensus 1842 ~vd~~~i~d~~~~~~~~~~i~~fGq~P~QLF~~pHp~R 1879 (2342)
.+ +.|+.++.++++++.+|||+|.|||++|||+|
T Consensus 237 ~~----~~~~~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 270 (270)
T PF02138_consen 237 SW----IEDPMEREAIEAQLKNFGQVPIQLFTKPHPKR 270 (270)
T ss_dssp S-------SHHHHHHHHHHHHHC--------SS-----
T ss_pred cc----cCCHHHHHHHHHHHHhcCCChHHHhCCCCCCC
Confidence 87 67899999999999999999999999999998
|
The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C. |
| >KOG1786 consensus Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-55 Score=590.23 Aligned_cols=358 Identities=33% Similarity=0.511 Sum_probs=321.7
Q ss_pred eEeeccceeEEeeccccCcccEEEEEEeCCceEEEEcCChhhHHHHHHHHHhcCCCCCcccc--ccccChHH--------
Q 000085 1525 RSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPHLNDIY--LATQRPEQ-------- 1594 (2342)
Q Consensus 1525 ~~~~~~~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~-------- 1594 (2342)
..|....+..+++|.++++..|.++|-.++....+.|+. ..|...|+.+.....+-...+. .....+.-
T Consensus 251 ~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 329 (1081)
T KOG1786|consen 251 DLIDAFLISLVLKRLVLLRLIALSVFSSLGRVTLLVLPK-LIRKSLFDKLLAHPSRENSSGLLELCLRFPMLLSGGFRLL 329 (1081)
T ss_pred ccchhhhhhhHHHHHHHhhhhHHHhhhcccceeecccch-hHHhhhhhhhhccCccccchhhhhhcchhhhhhhcccccc
Confidence 344567788999999999999999999999999999965 5677777776544332211110 00111111
Q ss_pred --HHHHHHHHHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHH
Q 000085 1595 --LLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLK 1672 (2342)
Q Consensus 1595 --~~~~~~~t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~ 1672 (2342)
+.....++.+|.+|+++||+|||+||+++||+++|++|||||||++.+|+++.+|+.||.++|++.||+|++++++.+
T Consensus 330 ~~~~~~~s~~~~W~~~~~~n~~yl~~ln~l~~r~~~~~~~~pi~pw~~~~~~~~~l~~~d~~~~r~~~~~~~~~s~e~~~ 409 (1081)
T KOG1786|consen 330 SRFKSLKSAFGRWLSGELENFQYLMHLNTLAGRSIADLAQYPIFPWVLAFYDFSGLDLLDPLTARKLLKLGGHQSDEGYE 409 (1081)
T ss_pred chhhhhhhhhcccccCchhhhhhhhhcCcccccchhhhccCcccceeeccccccchhhcChHhhhhhhhccCCCCHHHHH
Confidence 111467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCC--CCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhc-CC-CCcc
Q 000085 1673 KFQERYSSFDDP--VIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLE-DM-SDVK 1748 (2342)
Q Consensus 1673 ~~~~ry~~~~d~--~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~-~~-~dvk 1748 (2342)
.+..||+++.|+ ..|.|||++||+++.+++.|++|.+|++.+++.+|+|.|+++||+|+++.++|.++.. ++ ++++
T Consensus 410 ~~~~r~~~~~d~~~~~~~~~~~t~~~S~~~~~~y~~r~~p~~~~~~~i~~~~~~~~d~~~~s~~~~Wt~~~~~~~~~~i~ 489 (1081)
T KOG1786|consen 410 RFAKRFEEWLDQNAEDPLFHVLTHLLSPLIVMSYFARKNPLSELFLSIRRGYFPIADRLFHSRMQAWTPDEKGNLHSCIK 489 (1081)
T ss_pred HHhhhhhhhhccccccccccccccccchhhhhhhhhhcCcchHHHHHhhcccccccchhhhhhhcccCcccccccchhHH
Confidence 999999999886 5689999999999999999999999999999999999999999999999999997662 23 7999
Q ss_pred cccccccccccccccCCCCCcccccCCCcCCCccCCCCCC-ChHHHHHHHHHHhhhhhhhhhhhhhhhhh-hhccccchh
Q 000085 1749 ELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAE-NPVDFIHKHRMALESDYVSAHLHEWVDLI-FGYKQRGKE 1826 (2342)
Q Consensus 1749 ELIPEfFy~Pefl~N~n~~~lG~~q~g~~v~dV~LP~Wa~-~p~~FI~~~R~aLES~~VS~~Lh~WIDLI-FGyKQ~G~~ 1826 (2342)
|||||||+.|+||.|.+.+++|++|+|..++||.|||||. .|++||++||+|||++|||++||+|||++ |||||.|++
T Consensus 490 eli~~~~~~p~~l~n~~~~~lg~~~~~~~~~~~~lP~ws~~~~~~fi~~h~~ale~~~vs~~Lh~wId~~~fgykq~g~~ 569 (1081)
T KOG1786|consen 490 ELIPKFVNDPSFLENSVILDLGEKQNGDSVDDVILPPWSSSSPREFIRDHRKALESNRVSQRLHHWIDLTIFGYKQNGSA 569 (1081)
T ss_pred HHHHHhccChHHHhhhhhhhhhhhcccccccceecCcccccCHHHHHHHHhhcccccchhhccccceeeehhhhhhcchH
Confidence 9999999999999999999999999999999999999999 69999999999999999999999999999 999999999
Q ss_pred hhhcCcccc----ccccccccccccCCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000085 1827 AISANNVFF----YITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKKMPLG 1883 (2342)
Q Consensus 1827 Av~a~Nvf~----~~tY~~~vd~~~i~d~~~~~~~~~~i~~fGq~P~QLF~~pHp~R~~~~ 1883 (2342)
|+.+.|||+ +++|++.+|.+.+.|+..+.+++.++.+|||+|+|+|.++|+++...+
T Consensus 570 ~~~~~nv~~~~~~~l~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~h~~~~~~~ 630 (1081)
T KOG1786|consen 570 AVIAMNVFLVSNKHLFYVNSVLNLRGYDPLEQNILIVSNNHFKQTIKQLFPKKHSVSELTE 630 (1081)
T ss_pred HHHHHHHHhhhhhhhccccchhhhcccchhhhhhhHHHhhccccchhhcccccccccccch
Confidence 999999999 999999999999999999999999999999999999999999887653
|
|
| >KOG1787 consensus Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=461.02 Aligned_cols=652 Identities=20% Similarity=0.085 Sum_probs=511.1
Q ss_pred cHHHHHh-hcChhhHhhhcCChHHHHHHHHHhcccCCCCCCCCccccccccccHHHhhhcceeecccccccccccC-CCC
Q 000085 1103 PLEAAIA-MISAPWAAAFASPPAAMALAMIAAGAAGGDAPAPVATSQLRRDTSLLERKQTRLYTFSSFQKTSEVTN-KSS 1180 (2342)
Q Consensus 1103 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 1180 (2342)
|+|.+.+ ||++.|+++++|+|.+|.++|++||+++++...+|..+..+||.+..|++..++.||.|++||++..+ +..
T Consensus 462 P~qm~k~~~~t~~w~~~~~s~~~~l~~l~t~agrsyndl~qypvfpwvl~dy~s~~ld~s~~~~frdlsKpigaln~~~~ 541 (1126)
T KOG1787|consen 462 PVQMAKNSGITQEWQAREISNFEVLMQLNTSAGRSYNDLTQYPVFPWVLRDYSSETLDLSKLSTFRDLSKPIGALNPKRA 541 (1126)
T ss_pred HHHHHHhcCccHHHHhhccccHHHHHHHHhccCcccCccccCCCCCeeeecccchhhhcccchhHHhhcCcccCCCcccc
Confidence 7888888 99999999999999999999999999999999999999999999999999999999999999999988 889
Q ss_pred CCccchHHHHHHHHHHHhhHHHhhccCCCCCchHHhhhhhhhhcccccccccccccchhHHHHHHHHhcccccccccccc
Q 000085 1181 PLPKDKASAKAAALAAARDLERNAKIGSGRGLSAVAMATSAQRRNASDTERVERWNISEAMGVAWMECLQPVDTKSVYGK 1260 (2342)
Q Consensus 1181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~w~~c~~~~~~~~~~~r 1260 (2342)
.+..|+.+++.....++++.. .++++.+|+.++.|++..++++..++++-+.||...+|...|++|.+.+...+.++.
T Consensus 542 ~~f~dry~s~~D~~i~~~~~~--thys~~~~~l~~l~rvepf~S~~~~l~~gkfd~~dr~~~sv~~~~r~~l~d~sdvke 619 (1126)
T KOG1787|consen 542 YLFRDRYESFEDQAIPSFHYG--THYSSAANVLAYLLRVEPFTSLHLQLQDGKFDHADRAFSSVASSWRRCLRDTSDVKE 619 (1126)
T ss_pred hhHhhhhhccccccccccccc--cccccccceeeeeeecCccccccccccccccccchhhHHHHHHHHhhhccchhhHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999988889999
Q ss_pred cccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcceeEe
Q 000085 1261 DFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFWKL 1340 (2342)
Q Consensus 1261 ~~~e~~~k~~~~~v~~~~lar~~~R~E~~r~~~l~~~~~~r~~~a~r~W~ki~~~Lt~ERGlwGPw~~~~~s~~~~fWKL 1340 (2342)
.++|.-|++ +.+.++..+.+..|...-....--..+-|..-|+.+.+...-.+..|++.....+-+...+||+
T Consensus 620 lipeffy~p-------~ll~~~~~~~lg~~~dg~~vi~v~lppwa~~pe~f~~~nr~aLes~fvs~~l~~widlifg~Kq 692 (1126)
T KOG1787|consen 620 LIPEFFYFP-------ELLVNSNLYNLGVRVDGEPVIDVVLPPWAKSPEDFETRNREALESEFVSCQLHQWIDLIFGYKQ 692 (1126)
T ss_pred hhhHHHHHH-------HHHhccccccceeecCCccceeeecccccCCHHHHHHHHHHHhhccccccccchhHHhhhhHhh
Confidence 999999888 5566667777777776644443334444567788887666555666887777666666789999
Q ss_pred eccCCccccceeecccCCCCCCccccccchhhcccCCCCCccCCCCCchhhHHHhhcccccCCcccccc--CCccccccc
Q 000085 1341 DFMESSSRMRRCLRRNYMGSDHFGAAANYEDQIERKPGQENVINPSNAPIVAAEAISMEAVNEDDEQTE--NDNLDDRVY 1418 (2342)
Q Consensus 1341 D~tEd~sRMRrRLvRNy~fs~H~~Aaa~~e~~~~~~~~~~~~~~~~~~~i~~aeais~~~~~ed~e~~~--~e~l~d~~~ 1418 (2342)
+-.|.-.||+-...++|-|..|.+...+..+.. +++......++..... .+...++.
T Consensus 693 ~g~ea~~a~nvf~~~tyeG~v~~~~~~d~~~~~--------------------eai~~~i~~f~~~~~~~~~e~~~~~~- 751 (1126)
T KOG1787|consen 693 RGPEAVRAMNVFYYLTYEGAVDLDSITDQVLRT--------------------EAIEAQIASFGQTPSQLLQEQHPPRA- 751 (1126)
T ss_pred cCHHHHHhhhhhccCCccccccccccCChhHHH--------------------HHHHHHHhhccccchhhhhhccCCcc-
Confidence 999999999999999999999988776643321 2222222222111100 00000000
Q ss_pred ccCCcC-CCcccchHHHHHHhhhccCCCCCCCCccccccccccccCCCCCCCCCCceEEEEeeeeEeeeeeeeEEEEEEE
Q 000085 1419 NLDNVG-EDQTTVSEKIEQTLQASADSSDIPPARDQDLVSSSTAVLPGYVPSELDERIVFELPSSMVRPLRVIRGTFQVT 1497 (2342)
Q Consensus 1419 ~~~~~~-ed~~~~se~~~~~l~~s~~s~~~~~s~dq~l~~~~~~i~pg~~~~e~~EkVils~~c~mVtPl~v~~G~L~IT 1497 (2342)
..+. ++. ..................+++.........+.+.++. .++.+-++
T Consensus 752 --~~~~~~~~--~~~~~~~a~~~~~~~~~~~~s~s~~~v~aan~~~~~~-----------------------~~~~~~~~ 804 (1126)
T KOG1787|consen 752 --SESKLALP--SALVFEDASQLDVGIVLKRPSNSSVVVVAANTLFELC-----------------------QPTVLGVR 804 (1126)
T ss_pred --hhcccccc--ccchhhhhhhhhhhhccccCCCCcceeeccccccccc-----------------------ccceeeee
Confidence 0000 000 0000000000000000000000000000000111111 11111111
Q ss_pred eeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeeccccCcccEEEEEEeCCceEEEEcCChhhHHHHHHHHHhc
Q 000085 1498 TRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQA 1577 (2342)
Q Consensus 1498 ~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~~~~~i~~~ 1577 (2342)
.... |..+..+.+ .+.. ++...+.+.
T Consensus 805 ~~~~------------------------------------------------~~~n~~~~~-~~~~-----~~~~~~~~~ 830 (1126)
T KOG1787|consen 805 SLLE------------------------------------------------FPRNISSPS-VVVK-----RATEALRGA 830 (1126)
T ss_pred eeEE------------------------------------------------eehhccccc-hhhh-----hhhHhhccC
Confidence 1110 111111111 1100 445667777
Q ss_pred CCCCCccccccccChHHHHHHHHHHHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccc
Q 000085 1578 RPPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYR 1657 (2342)
Q Consensus 1578 ~~~~~~~~~~~~~~~~~~~~~~~~t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~R 1657 (2342)
+++++..++..+..+........++.+|+...+++|.|||++|++.||++|+.++||.|||+..++-+...|+-.+..||
T Consensus 831 ~~~~~~~~~l~~~~~~~~~~~~~~v~r~~~~~~~~~~~l~~~~~~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~~~ 910 (1126)
T KOG1787|consen 831 RGSHLDQIPLATDEPLQLTASNQFVARRLRDDISDQSYLVQLNLFVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSVFR 910 (1126)
T ss_pred CccccccccccccchhhhhhccceehhhcccchhheeeeeecceEEEeccCccccccCccccccceEeeehhhhcccccc
Confidence 78888888888877777777888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-ccccCCHHHHHHHHHHhccCCCCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHH
Q 000085 1658 DLSK-PVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAAT 1736 (2342)
Q Consensus 1658 DLsK-PiGal~~~r~~~~~~ry~~~~d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~ 1736 (2342)
|..+ +++++++.+++.+...+....|+.++.+||+ ||++.+-+.+|.-+.+||+.+.+++++++||+.+++|..+...
T Consensus 911 d~~vv~~~ar~~~~l~~~~~~~s~s~D~tI~~~~~s-~~~~~g~~~~~~s~~~e~~~lt~~~~~~~~~~~~~~~s~v~~~ 989 (1126)
T KOG1787|consen 911 DGDVVTCGARLEQYLAALQYPVSSSEDGTIPLLYWS-HISSIGDIVVSGSAPEEFTTLTGQEASGKFSLVDAELSLVISG 989 (1126)
T ss_pred ccceeeeeecccccccccccccccCCCcceeeeeec-cccccccccccccccCccchheecccceeeeecchhhhhhhhh
Confidence 9999 9999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCcccccccccccccccccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 000085 1737 WNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDL 1816 (2342)
Q Consensus 1737 w~~~~~~~~dvkELIPEfFy~Pefl~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDL 1816 (2342)
|+.....+..++++.+.-++.|+++++.+...++.+.+...+..+..|.|+..+-. .+|...|.-+.++||+|
T Consensus 990 ~~~~~~~i~~~~gl~l~~~~~~~~~~~~~~~s~s~t~~~l~l~~~~~~v~~t~~~~-------~~~~~~I~v~~~~~~~l 1062 (1126)
T KOG1787|consen 990 AKGGLCLIHLVGGLLLRLLEHPINLSILGLISLSETINCLELYEPGRFVNYTKNGK-------DDEQRHIEVGSEDEILL 1062 (1126)
T ss_pred cccccceeeeecchhhhcccCccceechhhhhhcccccchhhccccccceeccccc-------cccccceEeecccchhh
Confidence 99999999999999999999999999999999999999999999999999987655 89999999999999999
Q ss_pred hhhccccchhhhhcCccccccccccccccccCCCHHHHHHH--HHHHHHcCCCcccccccCCCCCC
Q 000085 1817 IFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAA--QDQIAYFGQTPSQLLTVPHMKKM 1880 (2342)
Q Consensus 1817 IFGyKQ~G~~Av~a~Nvf~~~tY~~~vd~~~i~d~~~~~~~--~~~i~~fGq~P~QLF~~pHp~R~ 1880 (2342)
+|| +..+++.+.+..|.....+..++.+..++.+ -.++..+++++.+.-..+|-.|.
T Consensus 1063 ~~~-------~~~~~~~~~~i~~~~~~~i~~~s~~~sq~~~~~~~~~~~~~~~~~~fn~~~~~~~~ 1121 (1126)
T KOG1787|consen 1063 TGG-------WQMANLEKLYIYFGNGAGIPAISLTFSQRLLFSGDRSDSISAFESDFNRWHYESRS 1121 (1126)
T ss_pred cch-------hhhccccceEEEecCCCCccccccccchhhhhcCccccchhccchhhccccccccc
Confidence 999 7889999999999999999999998888876 33455666667665555544443
|
|
| >KOG1786 consensus Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=429.44 Aligned_cols=262 Identities=42% Similarity=0.750 Sum_probs=221.2
Q ss_pred cceEeeccceeEEeeccccCcccEEEEEEeCCceEEEEcCChhhHHHHHHHHHhcCCCCCccccccccChHHHHHHHHHH
Q 000085 1523 KDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAIVQARPPHLNDIYLATQRPEQLLKRTQLM 1602 (2342)
Q Consensus 1523 k~~~~~~~~I~~i~~Rr~~l~~~alEif~~~~~s~f~~F~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~t 1602 (2342)
.+..|.+++.+ |..+.++-|++..+.+..++++.+... .+....... . ...-....++
T Consensus 819 ~~~i~~Ls~~~------~~~ql~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~-----------~---~~~~~~~a~~ 876 (1081)
T KOG1786|consen 819 TVIIWDLSTLR------FQRQLTAFEILLSNLRILRLGGENASI--SAFTSVLSA-----------N---QIIGDLLAIT 876 (1081)
T ss_pred ceeeehhhhhh------hhhccccccchhHHHHHHHhccchhhh--hhhhhhhcc-----------c---ccccchhhhh
Confidence 45666666655 777888899988888888887765433 111111111 0 1111234568
Q ss_pred HhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHHHHHHHhccCC
Q 000085 1603 ERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFD 1682 (2342)
Q Consensus 1603 ~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~~~~~ry~~~~ 1682 (2342)
++|..|+|+||+|++.+|.+|||||||++||||||||++||.++.+||.+..+||+|++||+++ .+.+.+ +.+++
T Consensus 877 ~~~~~~~~~n~~y~~~~~~~agrs~nd~~q~~v~~~~~ad~~~k~~~l~~~~~~~~~~r~~a~~----~~~~~~-~~~~~ 951 (1081)
T KOG1786|consen 877 NTWEEGLISNFEYLTMLNLLAGRSFNDWMQYPVFPWVLADYVSKVLDLQDLLIYRDLSRPIAVQ----KEKLEE-HHSWE 951 (1081)
T ss_pred hhhccccccchHHHHHHHHhhcCcHHHhhcCcceEEEecccceeeEeeeccccccccccchhHH----HHHHhh-hhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999932 222333 33344
Q ss_pred CCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhh-cCCCCccccccccccccccc
Q 000085 1683 DPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVL-EDMSDVKELVPELFYLPEIL 1761 (2342)
Q Consensus 1683 d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~-~~~~dvkELIPEfFy~Pefl 1761 (2342)
-....+||||+|||++++|.+|++|+.|||.+++.+|+|.||.+||.||++..+|.... ++++|+|||+| |||+|||+
T Consensus 952 ~e~~~~~~~~~~~s~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~dr~f~~l~~~~~~~~~~s~td~kel~p-~f~~pe~l 1030 (1081)
T KOG1786|consen 952 SEDTEPYHYGSHYSNSGTVSHFLIRLPPFTEMFLSLQDGRFDFPDRLFHSLETAWSLASIESSTDVKELIP-FFYLPEFL 1030 (1081)
T ss_pred hhccCCccccccccCccccccccccCCchHHHHHHhccCcCCCcccccccccccccccccccccchhhccc-cccCccee
Confidence 33447899999999999999999999999999999999999999999999999999765 57999999999 99999999
Q ss_pred ccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhh
Q 000085 1762 TNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVD 1815 (2342)
Q Consensus 1762 ~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WID 1815 (2342)
.|.|+++||++|+|++++||.+ --+|+-||++||.||||+||+.++|+|||
T Consensus 1031 ~n~~~~d~g~~qn~~~~~~~~~---~~~~~~~i~~hr~al~s~~v~~~~~~~i~ 1081 (1081)
T KOG1786|consen 1031 RNRNGFDFGERQNGERVNDVVL---RGDPRSFILIHRQALESEYVSSNLHTWID 1081 (1081)
T ss_pred ecCCccccCcccCCCcccceee---ccchHHHHHHHHHhhhcccccccceeccC
Confidence 9999999999999999999999 55899999999999999999999999998
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=327.13 Aligned_cols=312 Identities=19% Similarity=0.193 Sum_probs=257.9
Q ss_pred ceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1988 ALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1988 sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
++.+|... |-|+.|+|+|..|++|+.|.++|+||+.+..+..+.+||...|.|++|+|||+.|+||+.||+|++||.
T Consensus 110 S~~GH~e~---Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 110 SIAGHGEA---VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred ccCCCCCc---EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34444444 556999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccccCCCCCCccccccC-----CCCCceeecCCCc-cccccC--CceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSI-----GSSTPANASADKS-RRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~Sp-----DG~~Las~s~D~s-~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
.++.+......+|...+.+++|.| ..+.+++++.|+. ++|++. .++..+.||+.+|+|++|--+ .+++|||
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS 265 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGS 265 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecC
Confidence 999887777788999999998875 6678888888876 558774 488999999999999999654 4899999
Q ss_pred CCCcEEEEECCCCeEEEEEecCC--cEEEEEe-----------cCC-------------------------cEEEEEeCC
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGVD--AHAVSLS-----------SEG-------------------------VIMTWNKLQ 2181 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh~--vssLSfS-----------pDG-------------------------~IlVwdssd 2181 (2342)
.|++|++|+...|.+.+.+++|. ++.++.+ +.| ..++.++.+
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999999999875 4555544 323 348888889
Q ss_pred CeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC-----------CCcccccc
Q 000085 2182 HTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-----------SGTEDFDL 2249 (2342)
Q Consensus 2182 GsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-----------~~~iaFsp 2249 (2342)
.++.+|+... +.......+|..-|+.+.||||++++++++.|.+ .++|+...++ .+.++++.
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS------VkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS------VKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc------eeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 9999998753 2122233459999999999999999999998888 5666655543 22334444
Q ss_pred ccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2250 ASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2250 d~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
+...... .+.|.++++||+++.+....++ ||...|.++.|+|||..+++|+.|..+++|.
T Consensus 420 DsRLlVS----~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 420 DSRLLVS----GSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CccEEEE----cCCCceEEEEEeeeeeecccCC-CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 4322222 2359999999999999999998 9999999999999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=315.58 Aligned_cols=277 Identities=17% Similarity=0.200 Sum_probs=250.9
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
+.+.+..+.|+.|++.|++|+|+|.++||+..+...+++|.||++.|.++.|+|. +..++||+.||+|++|++.+...
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 3345666899999999999999999999999999999999999999999999997 67899999999999999998644
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccc-ccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
+.. ..+|...|..++|+|+|+++++++.|.+++ |++ ...+....||...|.+++|.+||.+++|||.|..-+|||+
T Consensus 254 l~~-l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 254 LQD-LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred hhh-hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 433 456778899999999999999999998754 766 4456677899999999999999999999999999999999
Q ss_pred CCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCCC
Q 000085 2150 RRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSALIGVNSSST 2226 (2342)
Q Consensus 2150 rTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~DGs~ 2226 (2342)
++|.++..+.+|. +..++|+|+|..++.++.|+++++|++.+.........|.+-|+.|.|+| .|.+|+|++.
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy---- 408 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY---- 408 (459)
T ss_pred ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc----
Confidence 9999999999984 88999999999999999999999999987766655566999999999998 7888998863
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
|++++||...+..+++++. ||.+.|.++++++|+.++++++.
T Consensus 409 -------------------------------------D~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 409 -------------------------------------DNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred -------------------------------------CcceeeecCCCcccchhhc-CCccceEEEEeccCCceEEEecc
Confidence 6779999999999999999 99999999999999999999999
Q ss_pred CCcEEEEe
Q 000085 2307 DKQLIVFT 2314 (2342)
Q Consensus 2307 DGsIrVWD 2314 (2342)
|.++++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=277.06 Aligned_cols=266 Identities=20% Similarity=0.252 Sum_probs=223.6
Q ss_pred CeEEecCCCceEEEecCCCCCCCccccc---ccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHF---PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~---p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
..+.+++.|+++-+|+.... ++.+ .+.+.+|+. .+.-+++++||++.++|++|+++++||+.+|+..+.|
T Consensus 29 ~~l~sasrDk~ii~W~L~~d----d~~~G~~~r~~~GHsH---~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f 101 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSD----DIKYGVPVRRLTGHSH---FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF 101 (315)
T ss_pred ceEEEcccceEEEEEEeccC----ccccCceeeeeeccce---EecceEEccCCceEEeccccceEEEEEecCCcEEEEE
Confidence 45778999999999997652 4444 334455544 4455899999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.||+..|.+++|++|.+.++|||.|.||++|++.... ..
T Consensus 102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-----------------------------------------k~ 140 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-----------------------------------------KY 140 (315)
T ss_pred EecCCceEEEEecCCCceeecCCCcceeeeeeecccE-----------------------------------------EE
Confidence 9999999999999999999999999999999987631 11
Q ss_pred Ee--cCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2115 VL--RGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2115 ~L--~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
++ .+|.+.|+|++|+|+ ..+|+++|.|++|++||+++.+....+.+|. ++.+++||||.+++.+..+|.+.+|+
T Consensus 141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 12 224789999999998 7899999999999999999999999998886 68899999999999999999999999
Q ss_pred eCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2189 LNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2189 lnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
++. +.+. .+.|...|.+++|+|+.-.|+.+. +..|
T Consensus 221 L~~~k~ly--sl~a~~~v~sl~fspnrywL~~at------------------------------------------~~sI 256 (315)
T KOG0279|consen 221 LNEGKNLY--SLEAFDIVNSLCFSPNRYWLCAAT------------------------------------------ATSI 256 (315)
T ss_pred ccCCceeE--eccCCCeEeeEEecCCceeEeecc------------------------------------------CCce
Confidence 984 4333 345899999999999988887663 3459
Q ss_pred EEEECCCCeEEEEEecCC--------CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2268 CFLDLHTLKVFHVLKLGE--------GQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgH--------s~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+|||+.+..++..+.... .....+++|++||..|++|-.|+.|++|.+
T Consensus 257 kIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 257 KIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 999999998887776422 223678899999999999999999999985
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=268.83 Aligned_cols=268 Identities=16% Similarity=0.235 Sum_probs=233.6
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc------
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA------ 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg------ 2028 (2342)
++.+++++++.|+.+-||+..+.++.....+ ....|-.++|+|.|+++|+|+-|+...||++.+.
T Consensus 65 ~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---------~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~ 135 (343)
T KOG0286|consen 65 TDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---------PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNV 135 (343)
T ss_pred CCcCeEEeeccCCeEEEEEcccccceeEEec---------CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccc
Confidence 3578899999999999999887555433322 2235667999999999999999999999999854
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+..+.+.||++-+.|+.|-+ ...|+|+|.|.|+.+||+++++
T Consensus 136 ~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~------------------------------------- 177 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ------------------------------------- 177 (343)
T ss_pred eeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce-------------------------------------
Confidence 34567899999999999986 5689999999999999999963
Q ss_pred cCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.+..|.||.+.|.+++++| +++.++||+-|++.++||+|.+.++++|.+|+ +..++|.|+|.-++.+..+++.+
T Consensus 178 ---~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 178 ---QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred ---EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence 3556789999999999999 89999999999999999999999999999986 79999999999999999999999
Q ss_pred EEEeCC-ceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2186 SFTLNG-VLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2186 I~dlnG-~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
+|++.. +.+...... ...+|++++||..|++|++|..
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~----------------------------------------- 293 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD----------------------------------------- 293 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec-----------------------------------------
Confidence 999974 344433222 4678999999999999998842
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
|..+.|||.-.++.+..+. +|...|+|+..+|||.-|++|+.|..++||.
T Consensus 294 d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 294 DFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEeeccccceEEEee-ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 6779999999999999999 9999999999999999999999999999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=281.92 Aligned_cols=311 Identities=18% Similarity=0.192 Sum_probs=242.9
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc---
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS--- 2035 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~--- 2035 (2342)
+++++++|+++.+|.++. +.|..+..-| .+-|.|+.|+|||.++++.+.||.|.+||-.+|+.+..+.
T Consensus 162 Ri~T~sdDn~v~ffeGPP------FKFk~s~r~H---skFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPP------FKFKSSFREH---SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred EEEeccCCCeEEEeeCCC------eeeeeccccc---ccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC
Confidence 689999999999999886 4444433333 3467789999999999999999999999999999999887
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc-c--ccCCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-R--RIEGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~--~i~~~ 2112 (2342)
+|++.|.+++|+||+..++|+|.|.+++|||+.+..+..+........-..+..-.....+++.+.++... . .-..+
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence 89999999999999999999999999999999998877776333321111121112234444444443322 1 12347
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-------------------------------EEEec-
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI-------------------------------RRLVG- 2160 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI-------------------------------rsL~g- 2160 (2342)
...+.||...|+++..++++.+++||+.||.|.-||..+|..- +.+..
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence 8899999999999999999999999999999999998765311 11100
Q ss_pred ------C---------------------------------------------CcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2161 ------V---------------------------------------------DAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2161 ------h---------------------------------------------~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
+ ...+++++|++..++.+..++.+++|.+
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence 0 0135677889999999999999999999
Q ss_pred CCceeee--ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2190 NGVLVAR--AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2190 nG~~L~s--~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
+|..+.. ....|.++|++++|||||.||++|.. .+.+
T Consensus 473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-----------------------------------------~rkv 511 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-----------------------------------------SRKV 511 (603)
T ss_pred cCCcccceeeeecccCCceEEEECCCCcEEEEecc-----------------------------------------CCcE
Confidence 9855332 23349999999999999999998841 4679
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.+||+.+.+.....-.-|.+.|.|++|+|+..++++|+-|-.|.||++....
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence 9999999887444443599999999999999999999999999999976543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=277.62 Aligned_cols=298 Identities=19% Similarity=0.234 Sum_probs=238.6
Q ss_pred cccccCCcEEEEecCCccceeee-------cccCCCCCCCC------CC----ceeecCCCeEEecCCCceEEEecCCCC
Q 000085 1915 AIHASSDTVVIVDMNAPAAHIAR-------HNWQPNTPDGQ------GT----PFLFQHGKASASPASGTFLRMFKGPGG 1977 (2342)
Q Consensus 1915 ~I~~SsDsVV~Vd~N~~~~~la~-------~kW~p~t~dg~------~s----~flf~~Gk~LaSsSsD~tIRVwdg~tg 1977 (2342)
.|.++..+|+++.....+.++++ .-|++.+.-.. .. .-.-|+|+.|++++-|+.|++|++.+|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 35667778888877766656554 35776542211 10 112479999999999999999998774
Q ss_pred CCCcccccccceeccccCcceeEEEEEcC-----CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE
Q 000085 1978 SGADEWHFPRALAFASSGIRSSAVVSITH-----DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF 2052 (2342)
Q Consensus 1978 s~~~ew~~p~sls~hs~gI~Svt~VafSp-----DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~ 2052 (2342)
.. ..+.+..|...| ++++|.| ..++||+++.||+|+|||+..++++..+.||+.+|+|+.|--+ .+
T Consensus 190 ~~-----~g~~l~gH~K~I---t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gl 260 (480)
T KOG0271|consen 190 QQ-----IGRALRGHKKWI---TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GL 260 (480)
T ss_pred Cc-----ccccccCcccce---eEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ce
Confidence 32 345566666555 4488854 5679999999999999999999999999999999999999754 49
Q ss_pred EEEEeCCCceEEEeccCCccccccccCCCCCCcccccc-----------CCCC-------------------------Cc
Q 000085 2053 LVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNS-----------IGSS-------------------------TP 2096 (2342)
Q Consensus 2053 LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~S-----------pDG~-------------------------~L 2096 (2342)
|+|||.|+||++|+...|.+.+.+ .+|...|..++.+ +.+. .+
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCREL-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhh-cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 999999999999999998766554 3344444444333 3333 36
Q ss_pred eeecCCCc-ccccc---CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEec
Q 000085 2097 ANASADKS-RRRRI---EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSS 2170 (2342)
Q Consensus 2097 as~s~D~s-~~~~i---~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSp 2170 (2342)
++++.|.. ..|+. .+++....||..-|+.+.||||+++|+|+|-|..|++||-++|+.+.+|++|- ++.++||.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 77777755 34554 45777889999999999999999999999999999999999999999999984 89999999
Q ss_pred CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2171 EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2171 DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|.++++.++.|.++++|++..+.+..-..+|.+.|.++.|+|||+.+++|+.
T Consensus 420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGK 471 (480)
T ss_pred CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCC
Confidence 9999999999999999999998888777779999999999999999998863
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=284.24 Aligned_cols=262 Identities=18% Similarity=0.185 Sum_probs=229.8
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAK 2029 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgk 2029 (2342)
++..+++.++|++-++++++|+.++. .....+.+|... +.++.|+|. +.-+|+|+.||++++|++++..
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~------~~~~~l~gH~~~---v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQC------NLLQTLRGHTSR---VGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCc------ceeEEEeccccc---eeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 44568899999999999999997762 222344445444 556999998 5589999999999999999999
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccc
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRR 2108 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~ 2108 (2342)
.++.+.||...|..++|+|+|++|+|+|.|.+-++||+++...... ..+|..++..++|.+||..+++++.|.. +.|+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~-QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL-QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh-hcccccccceeEecCCCceeeccCccchhheee
Confidence 9999999999999999999999999999999999999999654332 4789999999999999999999998875 4465
Q ss_pred c--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEec-CCcEEEEEeCCCe
Q 000085 2109 I--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSS-EGVIMTWNKLQHT 2183 (2342)
Q Consensus 2109 i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSp-DG~IlVwdssdGs 2183 (2342)
+ +.++..|.||..+|.+|+|+|+|..++|||.|++++|||++..+.+.++.+|. ++.|.++| .|.+++....|++
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 5 67889999999999999999999999999999999999999999999999986 78899998 7889999999999
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+++|...+........+|.+.|.++++++||+++++++.|
T Consensus 412 ~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 412 VKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred eeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence 9999988766666677899999999999999999999743
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=260.26 Aligned_cols=271 Identities=15% Similarity=0.198 Sum_probs=226.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--ccee
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLET 2033 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~t 2033 (2342)
+.-.+++++.|-+||+|...+|......+. ..+ .|+.+.++||++.||+++ .-.||+||+.++. ++.+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh------~ds---qVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t 78 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQH------PDS---QVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVAT 78 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEec------Ccc---ceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeE
Confidence 345689999999999999888644333222 222 356699999999999987 4579999999875 5889
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
+.+|+..|+.+.|..||+.++|||.||+++|||++...+
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~----------------------------------------- 117 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC----------------------------------------- 117 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-----------------------------------------
Confidence 999999999999999999999999999999999987322
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
+....|..+|+++..+|+...+++|..+|.|++||+.+..+.+.+... .+..+++.+||..++.....|..++|++-
T Consensus 118 qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 118 QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 123457799999999999999999999999999999998888777553 37889999999999999999999999986
Q ss_pred Cceeee------ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2191 GVLVAR------AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2191 G~~L~s------~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
+....+ ....|.+.|..+.+|||+++|+++|. |
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-----------------------------------------d 236 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-----------------------------------------D 236 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeecC-----------------------------------------C
Confidence 432221 12239999999999999999998862 7
Q ss_pred CeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2265 PSICFLDLHTL-KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2265 GsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.+++||+..+. +.-..+. +|...+...+||.||+||++|+.|+.+++|+....+
T Consensus 237 ktv~iwn~~~~~kle~~l~-gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVLT-GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ceEEEEecCCceeeEEEee-cCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 78999999987 5555666 899999999999999999999999999999976553
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=274.08 Aligned_cols=311 Identities=16% Similarity=0.218 Sum_probs=242.2
Q ss_pred eEEecCCCceEEEecCCCCCCC--cccccccce--eccc-cCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1959 ASASPASGTFLRMFKGPGGSGA--DEWHFPRAL--AFAS-SGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~--~ew~~p~sl--s~hs-~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
.+++++.+.+.|+|+....... ....+...+ ..+. ..-+.+++++|+.+|.+||+|+.||.+++|+.. |.++.+
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~t 271 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIST 271 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhh
Confidence 4677888889999986531111 111111111 1111 112567889999999999999999999999975 678889
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccc--ccC
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRR--RIE 2110 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~--~i~ 2110 (2342)
+..|+++|.++.|+.+|+||++++.|+++.+||..++.....+ ..+......+.|- +...+++.+.++. ..+ ...
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEe-cCceEeecCCCceEEEEEecCC
Confidence 9999999999999999999999999999999999887654443 2222221222222 2223344444432 222 335
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCC---------cEEEEEe
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEG---------VIMTWNK 2179 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG---------~IlVwds 2179 (2342)
.|+.++.||.++|.++.|+|.+.+|+|+|.|+|++||....+.+...+..|. ++.+.|+|+| ..++|..
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas 429 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS 429 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee
Confidence 7899999999999999999999999999999999999999999998888876 7778888865 4788999
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
.++.+++|++...........|..+|++++|+|+|+|+++|+.
T Consensus 430 ~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~------------------------------------- 472 (524)
T KOG0273|consen 430 FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL------------------------------------- 472 (524)
T ss_pred cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC-------------------------------------
Confidence 9999999999743444445569999999999999999999963
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
||.|.+|+.++++.++.+. .++.|..++|+.+|..|..+-.||.++|.|+
T Consensus 473 ----dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 473 ----DGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----CCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 6789999999999999887 4567999999999999999999999999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-25 Score=273.93 Aligned_cols=341 Identities=18% Similarity=0.228 Sum_probs=258.8
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-- 2030 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl-- 2030 (2342)
.-|+|+.++. +.++.+.||..+..... ++..=.......++...+.++.|+.|.++|++|+.|-+++||+++..+-
T Consensus 104 fSPng~~fav-~~gn~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~ 181 (893)
T KOG0291|consen 104 FSPNGKFFAV-GCGNLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF 181 (893)
T ss_pred ECCCCcEEEE-EecceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc
Confidence 3355666555 45679999998763221 2211111222345566778899999999999999999999999987665
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC------------------------Cccccc---------cc
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR------------------------AFTSRT---------GT 2077 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t------------------------g~~i~t---------~~ 2077 (2342)
...+.||++.|..+-|..+...++|.|.||.+.+|.... .+..++ ..
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 567889999999999999999999999999999998871 010000 01
Q ss_pred cCCCCCCccccccCC------------------------------------------CCCceeecCC----CccccccCC
Q 000085 2078 IEPSSGMGTPGNSIG------------------------------------------SSTPANASAD----KSRRRRIEG 2111 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpD------------------------------------------G~~Las~s~D----~s~~~~i~~ 2111 (2342)
......+.+.++++. |..++.++.. .++.|..+.
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 112233444444443 3333333322 112344455
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
-+...+||...++|++++|||++++||+.||.|+|||..+|-|+.+|..|. ++.++|+..|+.++..+-||+++.|++
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 567778999999999999999999999999999999999999999999875 789999999999999999999999999
Q ss_pred C-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2190 N-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2190 n-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
. .+..++...+...+..|++..|.|..+.+|+.| .-.|.
T Consensus 422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d----------------------------------------~F~If 461 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD----------------------------------------SFEIF 461 (893)
T ss_pred cccceeeeecCCCceeeeEEEEcCCCCEEEeeccc----------------------------------------eEEEE
Confidence 6 555666666677788999999999999988632 22599
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC-----hhhhhhhhhccccCCCc
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS-----LKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs-----~k~LdQLLk~GWegDGL 2336 (2342)
||++.||+.+..+. ||.++|.+++|+|++..|++|+.|.+|++|++=.-+ .......+...+.|||-
T Consensus 462 vWS~qTGqllDiLs-GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 462 VWSVQTGQLLDILS-GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGK 533 (893)
T ss_pred EEEeecCeeeehhc-CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCC
Confidence 99999999999999 999999999999999999999999999999952221 12223445666777763
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=290.78 Aligned_cols=239 Identities=20% Similarity=0.276 Sum_probs=215.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-------------------------------cceecccCCCCeEEEE
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-------------------------------TLETASGHCAPVTCLA 2045 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-------------------------------ll~tL~GHt~~VtcLA 2045 (2342)
..++|..|++|+.+||+|..|..|++|.+...+ ...++.||.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 346789999999999999999999999886311 1235789999999999
Q ss_pred ecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEE
Q 000085 2046 LSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC 2125 (2342)
Q Consensus 2046 fSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~ 2125 (2342)
|+|+.++|+|||.|++||+|.+.+. ..+..+.||..+|++
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~----------------------------------------s~~V~y~GH~~PVwd 498 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTW----------------------------------------SCLVIYKGHLAPVWD 498 (707)
T ss_pred ecccccceeeccCCcceeeeecccc----------------------------------------eeEEEecCCCcceee
Confidence 9999999999999999999999884 234567899999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCC
Q 000085 2126 CCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSG 2203 (2342)
Q Consensus 2126 VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~ 2203 (2342)
+.|+|-|-++||||.|++.++|.......++.+.+| .+.++.|+|+..+++.++.+.++++|++......+.+.+|.+
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 999999999999999999999999999999999987 488999999999999999999999999975555666678999
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
+|++++|||+|++|++|+. ||.|.+||+.++..+..+.
T Consensus 579 ~V~al~~Sp~Gr~LaSg~e-----------------------------------------d~~I~iWDl~~~~~v~~l~- 616 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDE-----------------------------------------DGLIKIWDLANGSLVKQLK- 616 (707)
T ss_pred ceEEEEEcCCCceEeeccc-----------------------------------------CCcEEEEEcCCCcchhhhh-
Confidence 9999999999999999863 6789999999999999999
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2284 GEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+|.+.|.++.||.||..|++||.|.+|++||+..
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=271.90 Aligned_cols=288 Identities=17% Similarity=0.221 Sum_probs=239.2
Q ss_pred EecCCccceeeecccCCCCCCCCCCceeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEc
Q 000085 1926 VDMNAPAAHIARHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSIT 2005 (2342)
Q Consensus 1926 Vd~N~~~~~la~~kW~p~t~dg~~s~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafS 2005 (2342)
...|+..+.++...|. +.|++|+++++.+-+.+|++.+ +.|...+.-|...++ ++.|+
T Consensus 90 ~s~NKvkc~V~~v~Wt-------------PeGRRLltgs~SGEFtLWNg~~------fnFEtilQaHDs~Vr---~m~ws 147 (464)
T KOG0284|consen 90 TSSNKVKCPVNVVRWT-------------PEGRRLLTGSQSGEFTLWNGTS------FNFETILQAHDSPVR---TMKWS 147 (464)
T ss_pred ccccccccceeeEEEc-------------CCCceeEeecccccEEEecCce------eeHHHHhhhhcccce---eEEEc
Confidence 3445555666666665 4578899999999999999754 455555555665554 59999
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcccceecccCC-CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHC-APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgkll~tL~GHt-~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
++|.++++|..+|.|++|+..- ..++.+++|. ..|+|++|+|++..++|||.||+|+|||....
T Consensus 148 ~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-------------- 212 (464)
T KOG0284|consen 148 HNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-------------- 212 (464)
T ss_pred cCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--------------
Confidence 9999999999999999999764 3455556555 99999999999999999999999999998764
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-- 2162 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-- 2162 (2342)
++...+.||.-.|.|++|+|...+|++||.|..|++||.++|.++.++.+|.
T Consensus 213 --------------------------kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 213 --------------------------KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT 266 (464)
T ss_pred --------------------------chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce
Confidence 2334568999999999999999999999999999999999999999999886
Q ss_pred cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC
Q 000085 2163 AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS 2242 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~ 2242 (2342)
+..+.|+++|.+++..++|..+++|++....-.....+|...|+++.|+|-..-|++.+ |
T Consensus 267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg--g------------------ 326 (464)
T KOG0284|consen 267 VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG--G------------------ 326 (464)
T ss_pred EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec--c------------------
Confidence 67788999999999999999999999973222222345999999999999765555432 1
Q ss_pred CccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2243 GTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2243 ~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.||.|..|.+...+++..+..+|...|++++|+|-|..|++|+.|.++++|...
T Consensus 327 --------------------~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 327 --------------------SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred --------------------CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 278899999998888888888999999999999999999999999999999843
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=247.00 Aligned_cols=275 Identities=24% Similarity=0.329 Sum_probs=235.3
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++|+|++++|++|+.||.|++|++.+++....+.+|...|.++.|+++++++++++.|+.|++|++.++......
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 34667999999999999999999999999998888889999999999999999999999999999999999986443333
Q ss_pred ccCCCCCCccccccCCCCCceeecCCC-cccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..+...+.++.+++++..++++..++ ...|+. .+....+..|...|++++|+|++.++++++.||.|++||+++++
T Consensus 90 -~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 90 -TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred -eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 34556788899999988887777444 455665 35567777899999999999999999998889999999999999
Q ss_pred EEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2154 LIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2154 lIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+..+..+. +..+++++++..++.+..++.+.+|++...........|...|.++.|++++.++++++.
T Consensus 169 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------- 239 (289)
T cd00200 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE--------- 239 (289)
T ss_pred cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC---------
Confidence 888888765 788999999988888888999999999754333333358889999999999888887741
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIr 2311 (2342)
|+.|++||+.+++.+..+. .|...|.+++|++++.+|++++.||.|+
T Consensus 240 --------------------------------~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 240 --------------------------------DGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred --------------------------------CCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 6789999999999988888 8989999999999999999999999999
Q ss_pred EEe
Q 000085 2312 VFT 2314 (2342)
Q Consensus 2312 VWD 2314 (2342)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=278.01 Aligned_cols=275 Identities=23% Similarity=0.332 Sum_probs=231.8
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEec-CCcccc
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTS-DGAKTL 2031 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl-~tgkll 2031 (2342)
..++|..+++++.++++++|...+... .....+..| ...+..++|+||++++++|+.|++|+|||+ ..+..+
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~----~~~~~l~~h---~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKS----NLLRELSGH---TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccc----hhhcccccc---ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 346788899999999999998744221 122333333 444566999999999999999999999999 666899
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
+++.||...|+|++|+|+|+.+++|+.|++|+|||+.++ +
T Consensus 240 ~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----------------------------------------~ 279 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----------------------------------------E 279 (456)
T ss_pred EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----------------------------------------e
Confidence 999999999999999999999999999999999999985 3
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCC----cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--LIRRLVGVD----AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--lIrsL~gh~----vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
+...+.+|.+.|++++|++++.++++++.||.|++||+.++. ++..+.++. ++.++|+|+|.+++....++.+.
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 456789999999999999999999999999999999999999 567766542 58899999999999999999999
Q ss_pred EEEeCCceeeeecCCCCCC---eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2186 SFTLNGVLVARAKLPLSGS---IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~---ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
+|++..........+|... +.+...+++|.++++|+.
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~---------------------------------------- 399 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE---------------------------------------- 399 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC----------------------------------------
Confidence 9999854444444455553 444556788999998863
Q ss_pred CCCeEEEEECCCCeEEEEEecCC-CCCeEEEEEecCCCEEEEEe--CCCcEEEEeCC
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGE-GQDITALALNKDNTNLLVST--ADKQLIVFTDP 2316 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgH-s~~ItsLafSPDG~~LaSGS--sDGsIrVWDi~ 2316 (2342)
|+.|++||..++..+..+. +| ...+..+.+++...++++++ .|+.+++|..+
T Consensus 400 -d~~v~~~~~~s~~~~~~l~-~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 400 -DGSVYVWDSSSGGILQRLE-GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -CceEEEEeCCccchhhhhc-CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 6779999999999999988 89 88999999999999999998 79999999843
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=253.53 Aligned_cols=312 Identities=16% Similarity=0.138 Sum_probs=242.0
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+..++.+++.+|+.+++++|+.|..-.||++.+|.....+.+|++.|+|+.|+.||.+|+||..+|.|+||+..++....
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW 142 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999976554
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCc-cccccC--CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.+. .....+..+.|+|.+..++.+..|+. +.|.+. ...+.+.||..+++|-.|.|+|+.++++..||+|++||+.+
T Consensus 143 ~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 143 KLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred Eee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 442 45567888999999999999998875 567664 46788999999999999999999999999999999999999
Q ss_pred CeEEEEEecCC---c----------EEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc---CCC
Q 000085 2152 GRLIRRLVGVD---A----------HAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL---DGH 2215 (2342)
Q Consensus 2152 GklIrsL~gh~---v----------ssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP---DGk 2215 (2342)
|+.+..+...+ . ..+..+.+|...+.+...|++..-..+.. ......+...+.|+.+.| .=.
T Consensus 222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~--~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV--PELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC--ccccccchhhhhhhhhcccccccc
Confidence 99998887321 2 34455555665555555555433222111 111122455555555544 556
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccc-----cCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQS-----VDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s-----~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+.++|+.||. ..+|++......+++-+..++.. .....++..+|.|+.||.++|++++++. ||..+|.
T Consensus 300 L~A~G~vdG~------i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il 372 (399)
T KOG0296|consen 300 LAACGSVDGT------IAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYT-GHQMGIL 372 (399)
T ss_pred hhhcccccce------EEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEe-cCchhee
Confidence 7788888877 45566655444443333332211 1222334469999999999999999999 9999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++++|++++++|+|.|++.+||+.+
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999965
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=275.71 Aligned_cols=289 Identities=18% Similarity=0.220 Sum_probs=221.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCC--------CCcc-----------------cccccceeccccCcceeEEEEEcCCCC
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGS--------GADE-----------------WHFPRALAFASSGIRSSAVVSITHDKE 2009 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs--------~~~e-----------------w~~p~sls~hs~gI~Svt~VafSpDGk 2009 (2342)
.+++.+|.+-.|..|++|+..... .... -...+.+.+|.+++.. +.|+|+.+
T Consensus 388 ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg---~sFsPd~r 464 (707)
T KOG0263|consen 388 DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG---CSFSPDRR 464 (707)
T ss_pred CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee---eeeccccc
Confidence 445667777788888888754200 0000 0111235566666555 89999999
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
+|++++.|+++|+|.+.+..++-.+.||..+|+++.|+|-|-|++|||.|+|.++|.....
T Consensus 465 fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~------------------- 525 (707)
T KOG0263|consen 465 FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN------------------- 525 (707)
T ss_pred ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999998763
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEE
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVS 2167 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLS 2167 (2342)
.+...+.||-+.|.|+.|+|+..++++||.|.+|++||+.+|..++.|.||. +.+++
T Consensus 526 ---------------------~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~ 584 (707)
T KOG0263|consen 526 ---------------------KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA 584 (707)
T ss_pred ---------------------CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE
Confidence 4567789999999999999999999999999999999999999999999985 78999
Q ss_pred EecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2168 LSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2168 fSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
+||+|++++.+..++.|.+|++.+..+.....+|.+.|+++.|+.||..|++|+.|++ .++|++.........
T Consensus 585 ~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns------V~lWD~~~~~~~~~~- 657 (707)
T KOG0263|consen 585 FSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS------VRLWDLTKVIELLNL- 657 (707)
T ss_pred EcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe------EEEEEchhhcccccc-
Confidence 9999999999999999999999876665566679999999999999999999998777 566766554322000
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
...+.. ++.+.-=+-.+.-.+.++. ....+|.++.|...+-.|++|
T Consensus 658 ---~~~~~~-------~~~~~~~~~~~~~llgs~~-tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 658 ---GHISTS-------NSAITQENNASSLLLGSFY-TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ---cccccc-------cccccccCCCCcceeeeee-ecCceEEEEEEeccceeEEec
Confidence 000000 0000000002233455555 556688889888766444444
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=251.41 Aligned_cols=316 Identities=16% Similarity=0.180 Sum_probs=240.7
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-- 2030 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl-- 2030 (2342)
.-|+|...++.++|+.+.+|++.++....+..- ...+-.++.+++|+||++.+++.+.|.+++|||+.+.++
T Consensus 198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELED------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred ECCCCCeEEEecCCccEEEEcCCCccEEEEecC------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 347899999999999999999998765544321 223344566699999999999999999999999876532
Q ss_pred -----------------------------------------ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2031 -----------------------------------------LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2031 -----------------------------------------l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
++++.||...|++++.++|+.+|+|||.||.|.-|+..+
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~ 351 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS 351 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence 234589999999999999999999999999999999998
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccc---------------------------------cCCceEEe
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR---------------------------------IEGPIHVL 2116 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~---------------------------------i~~~l~~L 2116 (2342)
+..-+.....|...+..+..+..+..+.++..|..+... ....+..+
T Consensus 352 g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l 431 (603)
T KOG0318|consen 352 GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL 431 (603)
T ss_pred ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence 765443334455555555555434333333332211110 01112333
Q ss_pred cCCC--------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE--EecC--CcEEEEEecCCcEEEEEeCCCeE
Q 000085 2117 RGHH--------REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR--LVGV--DAHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2117 ~GHs--------~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs--L~gh--~vssLSfSpDG~IlVwdssdGsI 2184 (2342)
+.+. -...+++++|++..++.|+.||.|+||.+..+..... +..| .++.+++||||.+++.+...+.+
T Consensus 432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 3332 3467999999999999999999999999987654322 2223 48999999999999999999999
Q ss_pred EEEEeCCceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2185 SSFTLNGVLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2185 ~I~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
.+|+............ |...|.|++|+|+..++++|+.
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl----------------------------------------- 550 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL----------------------------------------- 550 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc-----------------------------------------
Confidence 9999987666555555 9999999999999999999973
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|-.|.||++......-.++..|...|+.+.|-.+ ..|++.|.|..|++|+++
T Consensus 551 Dt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 551 DTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred cceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 5669999998765556666689989999999755 469999999999999964
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=263.50 Aligned_cols=300 Identities=15% Similarity=0.221 Sum_probs=239.7
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcC-CcEEEEecCCcccceecccCC
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVD-GSIKLLTSDGAKTLETASGHC 2038 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~D-GsIrVWDl~tgkll~tL~GHt 2038 (2342)
++++-+.+.+.+|..+. +.....++... ..+..++|+..|..||.|+.. |.+-||++.+..-+...+||.
T Consensus 280 lvvgFssG~f~LyelP~------f~lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~ 350 (893)
T KOG0291|consen 280 LVVGFSSGEFGLYELPD------FNLIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS 350 (893)
T ss_pred EEEEecCCeeEEEecCC------ceEEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc
Confidence 44444555667776554 22222333332 345569999999999988754 899999999988888889999
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
..++|++++|||++++||+.||.|+|||...+. +..++..
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf----------------------------------------C~vTFte 390 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF----------------------------------------CFVTFTE 390 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCce----------------------------------------EEEEecc
Confidence 999999999999999999999999999998864 3456788
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---cEEEEEecCCcEEEEEeCCC-eEEEEEeCCcee
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---AHAVSLSSEGVIMTWNKLQH-TLSSFTLNGVLV 2194 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---vssLSfSpDG~IlVwdssdG-sI~I~dlnG~~L 2194 (2342)
|+..|+.++|+..|+.+++.|.||+|+.||+...+..+++..+. ..+++..|.|.+++.+..+. .|.+|++....+
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 99999999999999999999999999999999999999998764 46778888899999887765 699999986667
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC-----------CCccccccccccccCCCCccCC
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-----------SGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-----------~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
.....+|.++|.+++|+|+|..|++||+|.+ .++|++-... ...+.|.|++...... .-
T Consensus 471 lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT------VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa----Tl 540 (893)
T KOG0291|consen 471 LDILSGHEGPVSGLSFSPDGSLLASGSWDKT------VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA----TL 540 (893)
T ss_pred eehhcCCCCcceeeEEccccCeEEeccccce------EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE----Ee
Confidence 7677789999999999999999999998888 5566655431 2233566665443333 34
Q ss_pred CCeEEEEECCCCeEEEEEec-------------------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKL-------------------GEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~l-------------------gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
||.|.+||...+..+..+.. ..+...+.+++|+||..|++||..+.|++|++++.
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 99999999987666544431 12357899999999999999999999999997653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=253.17 Aligned_cols=274 Identities=18% Similarity=0.185 Sum_probs=238.3
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce--------ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE--------TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~--------tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
+.|..|||||++|++|+.||.|.|||+.+|+..+ .+.-|.++|.|+.||.|...|+||+.||.|+||.+.+|
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 4568999999999999999999999999997654 34558899999999999999999999999999999999
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccc---cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR---RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~---~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
.|++.+...|..++.++.|+.|+..+.+++.|...+ ...++++..++||...|+...|.+||..+++++.||+|++|
T Consensus 296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW 375 (508)
T KOG0275|consen 296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVW 375 (508)
T ss_pred hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEe
Confidence 999999889999999999999999999999887655 34577889999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCC----cEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEE
Q 000085 2148 SIRRGRLIRRLVGVD----AHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~----vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+..+++|+.+++..+ +..+-.-|.+ .-++...+.+++++.++.|+.+.....+ ..+...+.++||.|.++.+.
T Consensus 376 ~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci 455 (508)
T KOG0275|consen 376 HGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI 455 (508)
T ss_pred cCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE
Confidence 999999999997643 3444444433 3444555678899999999888776554 45677888899999999876
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCE
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTN 2300 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~ 2300 (2342)
+ .|+.++.+.+.+|+.-.++. .|...|..++-+|..+.
T Consensus 456 g-----------------------------------------ED~vlYCF~~~sG~LE~tl~-VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 456 G-----------------------------------------EDGVLYCFSVLSGKLERTLP-VHEKDVIGLTHHPHQNL 493 (508)
T ss_pred c-----------------------------------------cCcEEEEEEeecCceeeeee-cccccccccccCcccch
Confidence 5 27889999999999999988 88999999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 000085 2301 LLVSTADKQLIVFT 2314 (2342)
Q Consensus 2301 LaSGSsDGsIrVWD 2314 (2342)
|++-++||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=253.15 Aligned_cols=277 Identities=15% Similarity=0.221 Sum_probs=243.8
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
-.+++.+-|+|+-.++++++.|++|++||..+|++...++||++.|..++|+..|++|+|+|.|-.+++||..+......
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k 187 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK 187 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH
Confidence 34556688999999999999999999999999999999999999999999999999999999999999999988533333
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccc-cc--cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRR-RR--IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~--i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...++...+.++.+-|.|.++++++.|.... |+ .+-++.++.+|...|..++.+.||.++++|+.|.+|++|-+.++
T Consensus 188 s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 3567888899999999999999999887643 54 46689999999999999999999999999999999999999999
Q ss_pred eEEEEEecCC--cEEEEEec---------------CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCC
Q 000085 2153 RLIRRLVGVD--AHAVSLSS---------------EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2153 klIrsL~gh~--vssLSfSp---------------DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk 2215 (2342)
++...++.|+ +.+++|.| .|.++..+.+|++|++|+++.....-...+|...|..++|+|.|+
T Consensus 268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence 8887777664 56666644 235888889999999999986555555667999999999999999
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
||++.. .|++++|||+++++++.++. .|..-|++++|+
T Consensus 348 yi~Sca-----------------------------------------DDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh 385 (406)
T KOG0295|consen 348 YILSCA-----------------------------------------DDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFH 385 (406)
T ss_pred EEEEEe-----------------------------------------cCCcEEEEEeccceeeeccC-CCcceeEEEecC
Confidence 999775 27889999999999999999 999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEe
Q 000085 2296 KDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2296 PDG~~LaSGSsDGsIrVWD 2314 (2342)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 9999999999999999997
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-25 Score=254.67 Aligned_cols=271 Identities=17% Similarity=0.251 Sum_probs=222.9
Q ss_pred CCceeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc
Q 000085 1949 GTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA 2028 (2342)
Q Consensus 1949 ~s~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg 2028 (2342)
+...+..++..+++|..|++|++|+..+ ......+.+|.+ +|.|+ .-|.++|++|+.|.+|+|||+++|
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~------~~c~~~L~GHtG---SVLCL--qyd~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNS------LECLKILTGHTG---SVLCL--QYDERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred ceEEEEecchhhhcccccCceEEecccc------HHHHHhhhcCCC---cEEee--eccceEEEecCCCceEEEEeccCC
Confidence 3455566788889999999999998654 223344555544 44444 456779999999999999999999
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+++.++.+|.+.|..+.|+ ..+++|+|.|.++.|||+.....
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~------------------------------------ 309 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD------------------------------------ 309 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH------------------------------------
Confidence 9999999999999999997 56999999999999999987321
Q ss_pred cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
....+.+.||...|+.+.|+ .++++|+|.|.+|++|++.++++++++.+|.--..|.-..|++++.++.+.+|++|+
T Consensus 310 -it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwd 386 (499)
T KOG0281|consen 310 -ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 386 (499)
T ss_pred -HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEe
Confidence 12345678999999999995 569999999999999999999999999999877788888999999999999999999
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
+..........+|..-|.|+.|. .+.+++|+. ||+|+
T Consensus 387 i~~G~cLRvLeGHEeLvRciRFd--~krIVSGaY-----------------------------------------DGkik 423 (499)
T KOG0281|consen 387 IECGACLRVLEGHEELVRCIRFD--NKRIVSGAY-----------------------------------------DGKIK 423 (499)
T ss_pred ccccHHHHHHhchHHhhhheeec--Cceeeeccc-----------------------------------------cceEE
Confidence 98555555566799999999995 678887752 78899
Q ss_pred EEECCCCe---------EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2269 FLDLHTLK---------VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2269 IWDL~Tgk---------~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
|||+.++. ++.++. .|++.|..+.| |...+++++.|.+|.|||+.+
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLV-EHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred EEecccccCCcccccchHHHhhh-hccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 99997653 233333 68889999998 667899999999999999643
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=238.68 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=202.8
Q ss_pred eEEEEEcCCC-CEEEEEEcCCcEEEEecC-----CcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1999 SAVVSITHDK-EIITGGHVDGSIKLLTSD-----GAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDG-klLASGS~DGsIrVWDl~-----tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
|..++..+.+ .++++++.|.++.+|++. .|..++.+.||...|..+..++||++.+|+|.|+++++||+.++
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-- 95 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-- 95 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--
Confidence 4457777764 489999999999999875 46778999999999999999999999999999999999999986
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
++.+.|.||...|.+++|++|.+.++|||.|.+|++||+..+
T Consensus 96 --------------------------------------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 96 --------------------------------------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred --------------------------------------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 245678999999999999999999999999999999998654
Q ss_pred eEEEEEecC--C--cEEEEEecC--CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2153 RLIRRLVGV--D--AHAVSLSSE--GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2153 klIrsL~gh--~--vssLSfSpD--G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
+..++..+ . +.+++|+|+ ..+++....|+.+++|++.+..+.....+|.+.++.+++||||...++|+.
T Consensus 138 -ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk---- 212 (315)
T KOG0279|consen 138 -CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK---- 212 (315)
T ss_pred -EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----
Confidence 44444333 2 789999998 678888899999999999998888888889999999999999999998763
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
||.+.+||++.++.++.+. |...|.+++|+|+.-+|+.+.
T Consensus 213 -------------------------------------dg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~~at- 252 (315)
T KOG0279|consen 213 -------------------------------------DGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLCAAT- 252 (315)
T ss_pred -------------------------------------CceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEeecc-
Confidence 7789999999999988876 889999999999987666554
Q ss_pred CCcEEEEeCCC
Q 000085 2307 DKQLIVFTDPA 2317 (2342)
Q Consensus 2307 DGsIrVWDi~s 2317 (2342)
+..|+|||...
T Consensus 253 ~~sIkIwdl~~ 263 (315)
T KOG0279|consen 253 ATSIKIWDLES 263 (315)
T ss_pred CCceEEEeccc
Confidence 45699999654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=267.26 Aligned_cols=243 Identities=21% Similarity=0.338 Sum_probs=212.5
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
...++.|+.|+++|+.+++++.|+.+++|+..+++ ..+.+.+|...|.+++|+|+++++++|+.|++++|||+...
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-- 235 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-- 235 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC--
Confidence 35678889999999999999999999999998887 78888999999999999999999999999999999999432
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...+.++.||...|++++|+|+++++++|+.|++|+|||++++
T Consensus 236 -------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 236 -------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred -------------------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 1346778999999999999999999999999999999999999
Q ss_pred eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCcee--eeecCCCCC--CeEEEEEccCCCEEEEEeCCCCC
Q 000085 2153 RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV--ARAKLPLSG--SIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2153 klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L--~s~~~~Hs~--~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
++++.+.+|. +..++|++||.+++.+..++.+++|++.+... ......+.. +++++.|+|+|.++++++.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~---- 354 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL---- 354 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----
Confidence 9999999985 78999999999999998899999999986552 222233333 5999999999999998852
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCC---eEEEEEecCCCEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQD---ITALALNKDNTNLLV 2303 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~---ItsLafSPDG~~LaS 2303 (2342)
|+.+++||+..+.++..+. +|... +.+...++.+.++++
T Consensus 355 -------------------------------------d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 355 -------------------------------------DRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred -------------------------------------CCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEE
Confidence 6789999999999999888 66654 445566789999999
Q ss_pred EeCCCcEEEEeCCCC
Q 000085 2304 STADKQLIVFTDPAL 2318 (2342)
Q Consensus 2304 GSsDGsIrVWDi~sL 2318 (2342)
|+.|+.|.+|+..+.
T Consensus 397 g~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSG 411 (456)
T ss_pred EeCCceEEEEeCCcc
Confidence 999999999997764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=261.90 Aligned_cols=347 Identities=16% Similarity=0.226 Sum_probs=255.7
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
-+-+++..+++++....+|+|..+++.....|.. .|.++ +-.++|+|.|.++++|+.||.++|||+..+.+.
T Consensus 69 ~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa-----~He~P---vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 69 ALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKA-----IHEAP---VITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred eecCCccEEEEeeccceEEEEEcccchHhHhHhh-----ccCCC---eEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 4567889999999999999999998765556632 23333 455999999999999999999999999999999
Q ss_pred eecccCCCCeEEEEecCCCC--EEEEEeCCCceEEEeccCCcc-ccccccCCCCCCccccccCCCCCceeecCC------
Q 000085 2032 ETASGHCAPVTCLALSSDSN--FLVTGSQDTTILLWRIHRAFT-SRTGTIEPSSGMGTPGNSIGSSTPANASAD------ 2102 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~--~LaSGS~DGTVrVWDl~tg~~-i~t~~~~~~~~V~svs~SpDG~~Las~s~D------ 2102 (2342)
..|.||.+.|..+.|+|+-+ .|++|..|++|++||+.+... .++ ...|.+.++++.+++|+..+.+.+.|
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~-~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT-MILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHH-HHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 99999999999999999754 589999999999999985432 111 12233333333333333322222111
Q ss_pred --------------------------------------------------------------------------------
Q 000085 2103 -------------------------------------------------------------------------------- 2102 (2342)
Q Consensus 2103 -------------------------------------------------------------------------------- 2102 (2342)
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence
Q ss_pred -------------------------Cc----------------------ccccc-CCceEEecCCCCCeEEEEEecCCCE
Q 000085 2103 -------------------------KS----------------------RRRRI-EGPIHVLRGHHREILCCCVSSDLGV 2134 (2342)
Q Consensus 2103 -------------------------~s----------------------~~~~i-~~~l~~L~GHs~~Vt~VafSPDg~l 2134 (2342)
.+ +.++. ...-+.+.||+..|.+++...+|.+
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 00 00000 0012355789999999997677889
Q ss_pred EEEEeCCCcEEEEECCCCe----EEEEEecCC--cEEEEEecCC-cEEEEEeCCCeEEEEEeCC-------ceee--eec
Q 000085 2135 VVSCSDSSDLLLHSIRRGR----LIRRLVGVD--AHAVSLSSEG-VIMTWNKLQHTLSSFTLNG-------VLVA--RAK 2198 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGk----lIrsL~gh~--vssLSfSpDG-~IlVwdssdGsI~I~dlnG-------~~L~--s~~ 2198 (2342)
++|||.|.++++|-++++. ++....+|. +..++++..| .+++..+.|+++++|.+.. ..+. ...
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 9999999999999885443 344455554 6677777666 4667778889999999865 1111 112
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC-----------CCccccccccccccCCCCccCCCCeE
Q 000085 2199 LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-----------SGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2199 ~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-----------~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
..|+..|+|++++|+.+.++|||.|.. .++|++.... .+...|++....... ++.|.+|
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDkt------aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT----~SgD~Tv 529 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKT------AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLAT----CSGDKTV 529 (775)
T ss_pred HhhcccccceEecCCCceEEecccccc------eeeecccCceEEEEeeCCccceEEEEeccccceeEe----ccCCceE
Confidence 239999999999999999999998877 4455554321 233456665443333 3459999
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+||.+.+..|+.++. ||...|..+.|-.+|++|++++.||-|++|++.+.
T Consensus 530 KIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred EEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 999999999999999 99999999999999999999999999999997644
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-23 Score=232.63 Aligned_cols=270 Identities=17% Similarity=0.219 Sum_probs=214.7
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccceec
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLETA 2034 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~tL 2034 (2342)
|..+++++.|+.+|+|+... ...|.....+ ..++.+++..++|+|.|++|++|+.|.++.||.-..+ +++.++
T Consensus 27 g~ilAscg~Dk~vriw~~~~---~~s~~ck~vl--d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS---GDSWTCKTVL--DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL 101 (312)
T ss_pred ceEEEeecCCceEEEEecCC---CCcEEEEEec--cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee
Confidence 44789999999999998543 2234433222 2355677777999999999999999999999986644 678899
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.||...|.|++|+++|++|+|||+|+.|-||.+..+.. ..+..
T Consensus 102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-------------------------------------fec~a 144 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-------------------------------------FECIA 144 (312)
T ss_pred eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-------------------------------------EEEEe
Confidence 99999999999999999999999999999999875311 13466
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR---RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr---TGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
.+++|+..|..+.|+|...+|+|+|.|.+|++|.-. .-.+++++.+|. +.+++|++.|.-++....++.+.+|..
T Consensus 145 VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 145 VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 789999999999999999999999999999999876 346899999985 778999999999999999999999985
Q ss_pred CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2190 NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2190 nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
-.. ....|...++.+.|. ...|++|+. |+.|++
T Consensus 225 ~~~----~~~~~sr~~Y~v~W~--~~~IaS~gg-----------------------------------------D~~i~l 257 (312)
T KOG0645|consen 225 YTD----LSGMHSRALYDVPWD--NGVIASGGG-----------------------------------------DDAIRL 257 (312)
T ss_pred ccC----cchhcccceEeeeec--ccceEeccC-----------------------------------------CCEEEE
Confidence 311 111288999999998 445666653 444555
Q ss_pred EECCC------CeEEEEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeC
Q 000085 2270 LDLHT------LKVFHVLKLGEGQDITALALNKD-NTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2270 WDL~T------gk~L~tL~lgHs~~ItsLafSPD-G~~LaSGSsDGsIrVWDi 2315 (2342)
+.-.. .+.+......|...|+++.|.|. ..+|++|+.||.|++|.+
T Consensus 258 f~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 258 FKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred EEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 54322 22233334478899999999994 678999999999999984
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=248.04 Aligned_cols=279 Identities=13% Similarity=0.133 Sum_probs=228.5
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc---ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGA---KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tg---kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.-|..+.||++|++||+++.|.+..+|.+... +...++.||..+|.-+.||||.++|++|+.|..+.+||+.++...
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~ 304 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR 304 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh
Confidence 44667999999999999999999999987643 457889999999999999999999999999999999999999988
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCc-cccccCCc-eEEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEGP-IHVLRGH-HREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~~-l~~L~GH-s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
+.....+...+.+++|.|||..+++++.|.. ..|+..+. .....+- ...|.++++++||+++++.+.|..|++++..
T Consensus 305 ~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 305 HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE 384 (519)
T ss_pred hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence 8876667788999999999999999998865 33665433 2233332 3569999999999999999999999999998
Q ss_pred CCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCC--eEEEEEcc-CCCEEEEEeCCCCC
Q 000085 2151 RGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGS--IGCMEISL-DGHSALIGVNSSST 2226 (2342)
Q Consensus 2151 TGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~--ItsLafSP-DGk~LaSGS~DGs~ 2226 (2342)
+......+.. +.++.+++|.||++.+.+..+..+++|++....+.....+|... |..-+|-. +..++++||
T Consensus 385 ~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS----- 459 (519)
T KOG0293|consen 385 ARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS----- 459 (519)
T ss_pred hhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-----
Confidence 7766644443 45899999999999999999999999999866666666665432 22223322 234444443
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEe
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLLVST 2305 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGS 2305 (2342)
.|+.|+||+..+++++.++. ||...|+||+|+|.. .++|++|
T Consensus 460 ------------------------------------ED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 460 ------------------------------------EDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred ------------------------------------CCceEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhhccC
Confidence 48899999999999999999 999999999999955 6789999
Q ss_pred CCCcEEEEeCCC
Q 000085 2306 ADKQLIVFTDPA 2317 (2342)
Q Consensus 2306 sDGsIrVWDi~s 2317 (2342)
.||+|+||....
T Consensus 503 DDgtIRIWg~~~ 514 (519)
T KOG0293|consen 503 DDGTIRIWGPSD 514 (519)
T ss_pred CCCeEEEecCCc
Confidence 999999998543
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=241.40 Aligned_cols=302 Identities=19% Similarity=0.258 Sum_probs=243.1
Q ss_pred cccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCce
Q 000085 1983 WHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTI 2062 (2342)
Q Consensus 1983 w~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTV 2062 (2342)
|.+-+.+.+|. ..|.|+++.|.++++++|+.|++|+|||+.+|++..++.||...|..+++|+-..||++++.|+.|
T Consensus 141 wKl~rVi~gHl---gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHL---GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred ceehhhhhhcc---ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 34444555544 456669999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
+.||+...+.++.+ .+|-.+|.++...|.-..+++++.|.+ +.|++ ...++.+.||..+|..|.+.|....++|||
T Consensus 218 KCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 99999987666554 578889999999999999999988875 45766 457899999999999999999888999999
Q ss_pred CCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEE
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~L 2217 (2342)
.|++|++||++.|+...++..|. +.+++..|.-..++.++. ..+..|.+..........+|+.-|++++.+.||-++
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~ 375 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-DNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV 375 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-ccceeccCCccchhhccccccceeeeeeeccCceEE
Confidence 99999999999999999998875 678888888776665544 457888886333333344599999999999887554
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe-------cCCCCCeE
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK-------LGEGQDIT 2290 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~-------lgHs~~It 2290 (2342)
+|+. +|.|.+||.++|-..+... ......|.
T Consensus 376 -~G~d-----------------------------------------ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~ 413 (460)
T KOG0285|consen 376 -SGGD-----------------------------------------NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIF 413 (460)
T ss_pred -EcCC-----------------------------------------ceEEEEEecCcCcccccccccccCCcccccccee
Confidence 4542 5679999998876544431 01346799
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCChhhhhhhhhccccCC
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGD 2334 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVWDi~sLs~k~LdQLLk~GWegD 2334 (2342)
+.+|...|..|++|..|.+|++|.-+..- ..+..-..|.++
T Consensus 414 as~fDktg~rlit~eadKtIk~~keDe~a---T~EthPl~w~P~ 454 (460)
T KOG0285|consen 414 ASCFDKTGSRLITGEADKTIKMYKEDEHA---TEETHPLNWKPE 454 (460)
T ss_pred EEeecccCceEEeccCCcceEEEeccccc---CcccCCcCCCCc
Confidence 99999999999999999999999854432 122222556665
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=236.56 Aligned_cols=265 Identities=15% Similarity=0.152 Sum_probs=218.6
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCC-cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDG-AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~t-gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+.++.|+|+|.+||+|+.|..|.+|++.. -+-..+++||.++|..+.|.+|++.|+|+|.|.+|+.||.+++++
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~----- 124 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR----- 124 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee-----
Confidence 45599999999999999999999999643 355677889999999999999999999999999999999999743
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
...+++|.+-|+.++.+.-| .++.||+.||++++||+|+...++
T Consensus 125 -----------------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 125 -----------------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred -----------------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence 34568899999998855444 467789999999999999999998
Q ss_pred EEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccc
Q 000085 2157 RLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235 (2342)
Q Consensus 2157 sL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw 2235 (2342)
++.. .+.++++|..++.-++.+.-++.|++|++..........+|.+.|+.+..+++|.++.+-+.|+. .++|
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t------vrvw 243 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT------VRVW 243 (338)
T ss_pred ccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce------EEEE
Confidence 8854 46889999999999999999999999999654555555679999999999999999998888777 4455
Q ss_pred ccCCCCCC-------------------ccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2236 GLNSKQSG-------------------TEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2236 ~l~~~~~~-------------------~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
+....... .+.++|+.. .....+.|..+++||..+...++.++ ||.+.|++++|+|
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~----~i~ags~dr~vyvwd~~~r~~lyklp-Gh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT----KITAGSADRFVYVWDTTSRRILYKLP-GHYGSVNEVDFHP 318 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCCC----ccccccccceEEEeecccccEEEEcC-CcceeEEEeeecC
Confidence 55432211 112222222 22233469999999999999999999 9999999999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 000085 2297 DNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWD 2314 (2342)
...+|.+++.|.+|++=+
T Consensus 319 ~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCcEEEEeccCceeEeec
Confidence 999999999999998744
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-22 Score=269.52 Aligned_cols=275 Identities=13% Similarity=0.193 Sum_probs=210.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCC-CcccccccceeccccCcceeEEEEEcCC-CCEEEEEEcCCcEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSG-ADEWHFPRALAFASSGIRSSAVVSITHD-KEIITGGHVDGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~-~~ew~~p~sls~hs~gI~Svt~VafSpD-GklLASGS~DGsIrVWDl~tgkll~ 2032 (2342)
++|..+++++.|+.|++|+...... ......+..... +...+.+++|++. +.+|++|+.||+|+|||+.+++.+.
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~ 569 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA---SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT 569 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEec---ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 4678899999999999998543110 011111111111 1123556889874 6799999999999999999999999
Q ss_pred ecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2033 TASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
.+.+|.+.|++++|+| ++.+|+||+.|++|++||+.++..
T Consensus 570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--------------------------------------- 610 (793)
T PLN00181 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--------------------------------------- 610 (793)
T ss_pred EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE---------------------------------------
Confidence 9999999999999997 789999999999999999987421
Q ss_pred ceEEecCCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCe-EEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2112 PIHVLRGHHREILCCCVS-SDLGVVVSCSDSSDLLLHSIRRGR-LIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafS-PDg~lLaSGS~DGtIrIWDLrTGk-lIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
+..+..| ..|.++.|+ +++.++++|+.||+|++||++++. .+..+.+|. +..+.|. ++..++.+..++.+++|
T Consensus 611 -~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 611 -IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred -EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEE
Confidence 2233333 578999995 569999999999999999998876 466777764 6778886 77788888899999999
Q ss_pred EeCCc------eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2188 TLNGV------LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2188 dlnG~------~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
++... .......+|...+++++|++++.++++|+.
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~--------------------------------------- 728 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE--------------------------------------- 728 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC---------------------------------------
Confidence 98521 122233458899999999999999999974
Q ss_pred CCCCeEEEEECCCCeEEEEEe------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2262 FPSPSICFLDLHTLKVFHVLK------------LGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~------------lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
|+.|++|+......+..+. ..|...|.+++|++++..|++|+.||.|+||+.
T Consensus 729 --D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 729 --TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred --CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 5667777765544332221 134567999999999999999999999999983
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=228.92 Aligned_cols=243 Identities=16% Similarity=0.168 Sum_probs=212.4
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.++.|++|.+.|++++.||.+.|||.-+...++.+.-...+|..++|+|.|++++.|+.|+.+.||++.+....
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~--- 132 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE--- 132 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---
Confidence 34566999999999999999999999999998888888888999999999999999999999999999999863110
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
+ .......+.+|++.+.|+.|-+ ...|+|+|.|.++.+||+++|+.++
T Consensus 133 --------------------------g-----~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 133 --------------------------G-----NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred --------------------------c-----cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEE
Confidence 0 0123456899999999999987 4568999999999999999999999
Q ss_pred EEecCC--cEEEEEec-CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2157 RLVGVD--AHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2157 sL~gh~--vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
.|.+|. +..++++| +++.++.+.-++..++|++......+.+.+|...|++|.|.|+|.-+++|+.
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----------- 249 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----------- 249 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC-----------
Confidence 999996 67778889 9999999999999999999866667777789999999999999999999973
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-GEGQDITALALNKDNTNLLVSTADKQLIV 2312 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-gHs~~ItsLafSPDG~~LaSGSsDGsIrV 2312 (2342)
|++.++||++..+.+..+.. .-..+|++++||..|++|++|..|..+.|
T Consensus 250 ------------------------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v 299 (343)
T KOG0286|consen 250 ------------------------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV 299 (343)
T ss_pred ------------------------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeE
Confidence 67799999999888887762 12368999999999999999999999999
Q ss_pred EeC
Q 000085 2313 FTD 2315 (2342)
Q Consensus 2313 WDi 2315 (2342)
||.
T Consensus 300 WDt 302 (343)
T KOG0286|consen 300 WDT 302 (343)
T ss_pred eec
Confidence 994
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-24 Score=254.20 Aligned_cols=273 Identities=16% Similarity=0.157 Sum_probs=228.7
Q ss_pred eeEEEEEcC-CCCEEEEEEcCCcEEEEecCC-cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1998 SSAVVSITH-DKEIITGGHVDGSIKLLTSDG-AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSp-DGklLASGS~DGsIrVWDl~t-gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.++++.|.| .+.+|++|+.|+.|+||++-. +++++++.||..+|..++|+.+|..+.|+|.|+++++||+++|.+...
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~ 295 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR 295 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEE
Confidence 345588888 888999999999999999876 899999999999999999999999999999999999999999988766
Q ss_pred cccCCCCCCccccccCCC-CCceeecCCC-cccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2076 GTIEPSSGMGTPGNSIGS-STPANASADK-SRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG-~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
+. ....++++.+.|++ +.+.++..++ ++.|++ ++.++.+..|-+.|..+.|-++|.++++.+.|++++||+.+.
T Consensus 296 f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~ 373 (503)
T KOG0282|consen 296 FH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI 373 (503)
T ss_pred Ee--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC
Confidence 52 34456788899998 4556666554 455766 456778888999999999999999999999999999999998
Q ss_pred CeEEEEEe---cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce---eeeecCCC--CCCeEEEEEccCCCEEEEEeCC
Q 000085 2152 GRLIRRLV---GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL---VARAKLPL--SGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2152 GklIrsL~---gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~---L~s~~~~H--s~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+-.++.+. .|...+++.+|+|.+++.-..+..+.+|.+.-.. ......+| .+--..+.|||||.+|++|..
T Consensus 374 ~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds- 452 (503)
T KOG0282|consen 374 PVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS- 452 (503)
T ss_pred CccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC-
Confidence 87665543 3567889999999999998889999999864311 11112234 355677899999999999852
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLL 2302 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~La 2302 (2342)
||.+.+||.++-+.+..++ .|.+++..+.|+|.. ..++
T Consensus 453 ----------------------------------------dG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 453 ----------------------------------------DGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred ----------------------------------------CccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeE
Confidence 7889999999999999999 899999999999954 6799
Q ss_pred EEeCCCcEEEEe
Q 000085 2303 VSTADKQLIVFT 2314 (2342)
Q Consensus 2303 SGSsDGsIrVWD 2314 (2342)
+|+.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=250.01 Aligned_cols=304 Identities=14% Similarity=0.193 Sum_probs=249.9
Q ss_pred CCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEE
Q 000085 1964 ASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTC 2043 (2342)
Q Consensus 1964 SsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vtc 2043 (2342)
..+..+.+++..+ ....+.+.+.+..|.. +.-+-|+.+++|.++..+.+|+|+..+..+. .+.||++.|.+
T Consensus 300 taeQnl~l~d~~~------l~i~k~ivG~ndEI~D--m~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlS 370 (775)
T KOG0319|consen 300 TAEQNLFLYDEDE------LTIVKQIVGYNDEILD--MKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLS 370 (775)
T ss_pred EccceEEEEEccc------cEEehhhcCCchhhee--eeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheee
Confidence 3455666665333 2223334444444444 2234677889999999999999998887665 88999999999
Q ss_pred EEecCCCCEEEEEeCCCceEEEeccCCcccccc---ccCCCCCCccccccCCCC-CceeecCCCc-cccccCC-------
Q 000085 2044 LALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---TIEPSSGMGTPGNSIGSS-TPANASADKS-RRRRIEG------- 2111 (2342)
Q Consensus 2044 LAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---~~~~~~~V~svs~SpDG~-~Las~s~D~s-~~~~i~~------- 2111 (2342)
+....+|-+|+|||.|+++++|.++++...... ..+|.+.+.+++++..+. .+++++.|.+ ..|....
T Consensus 371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~ 450 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP 450 (775)
T ss_pred eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence 996668889999999999999999554332222 567888999999977664 5577777765 4576644
Q ss_pred ceE----EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2112 PIH----VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2112 ~l~----~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
... +...|...|+||+++|+..+++|||.|.+.+||++..+....++.+|. +.++.|++..++++..+.|++|+
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 222 345799999999999999999999999999999999999999999995 89999999999999999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
+|.+.........-+|...|..+.|-.+|+.|++++. ||
T Consensus 531 IW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a-----------------------------------------dG 569 (775)
T KOG0319|consen 531 IWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA-----------------------------------------DG 569 (775)
T ss_pred EEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC-----------------------------------------CC
Confidence 9999876666666779999999999999999998852 77
Q ss_pred eEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2266 SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
-|++|++++.+|+.++. .|...|++++.++...++++|+.||.|.+|..-+.
T Consensus 570 liKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 570 LIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred cEEEEeccchhhhhhhh-hccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 89999999999999999 99999999999999999999999999999996554
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=243.10 Aligned_cols=279 Identities=12% Similarity=0.118 Sum_probs=215.4
Q ss_pred ceeEEEEEcCCCC-EEEEEEcCCcEEEEecCC--cccc--eec------ccC----CCCeEEEEecCCCCEEEEEeCCCc
Q 000085 1997 RSSAVVSITHDKE-IITGGHVDGSIKLLTSDG--AKTL--ETA------SGH----CAPVTCLALSSDSNFLVTGSQDTT 2061 (2342)
Q Consensus 1997 ~Svt~VafSpDGk-lLASGS~DGsIrVWDl~t--gkll--~tL------~GH----t~~VtcLAfSPDG~~LaSGS~DGT 2061 (2342)
..|.+.+|+|-.. ++++|+.|-+.++|++.. .... ..+ .++ +..||+++|+.+|..||+|+.||.
T Consensus 179 ~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~ 258 (524)
T KOG0273|consen 179 SEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGE 258 (524)
T ss_pred CceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcE
Confidence 3466799999888 999999999999999864 1111 111 122 356999999999999999999999
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
+++|+.... .+.++..|.++|.++.|+..|.+|++++.|
T Consensus 259 ~riw~~~G~-----------------------------------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 259 ARIWNKDGN-----------------------------------------LISTLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred EEEEecCch-----------------------------------------hhhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 999998763 234567899999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecCCcE--EEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEE
Q 000085 2142 SDLLLHSIRRGRLIRRLVGVDAH--AVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh~vs--sLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaS 2219 (2342)
|++.+||..+|...+.+.-|+.. .+.|-.+.. ++....++.|+++.+.+........+|.+.|.++.|+|.|.+|++
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE-FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecCce-EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE
Confidence 99999999999999988877643 355555544 455567889999999876666666779999999999999999999
Q ss_pred EeCCCCCCCCCcc---cccccCCC--CCCccccccccccc-----cCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCe
Q 000085 2220 GVNSSSTNNGSYD---NIQGLNSK--QSGTEDFDLASDQS-----VDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDI 2289 (2342)
Q Consensus 2220 GS~DGs~d~~i~d---~Lw~l~~~--~~~~iaFspd~~~s-----~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~I 2289 (2342)
++.|++...|.+. ...++..+ ..+.+.++|++-.. ......+..|++|++||+..+.+++++. .|..+|
T Consensus 377 ~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-kH~~pV 455 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-KHQEPV 455 (524)
T ss_pred ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-cCCCce
Confidence 9999884433320 00111111 12233344433221 1111223469999999999999999998 899999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2290 TALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2290 tsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.+|+|+|+|+++++|+.||.|.+|+.+..
T Consensus 456 ysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 456 YSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EEEEecCCCcEEEecCCCCeeEeccccch
Confidence 99999999999999999999999997655
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=234.42 Aligned_cols=294 Identities=15% Similarity=0.218 Sum_probs=229.6
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc----ce
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT----LE 2032 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl----l~ 2032 (2342)
++.|.+++.|+++|+|+..+ .....+.+|.+.+.++..+.-.+....+++++.|.++++|.++.+.. ++
T Consensus 115 ~~~IltgsYDg~~riWd~~G-------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~ 187 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG-------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK 187 (423)
T ss_pred CceEEEeecCCeeEEEecCC-------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence 67788999999999998654 12234677888887755444445555899999999999999887643 34
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
...||.+.|.|++..++|..++|||.|.+++||+..+.. ..+...... -+..+ ...........+
T Consensus 188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~--------~rrk~------~~~~~~~~~r~P 252 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSN--------RRRKK------QKREKEGGTRTP 252 (423)
T ss_pred HhcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccch--------hhhhh------hhhhhcccccCc
Confidence 556999999999999999999999999999999943321 100000000 00000 000001123467
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeC-
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLN- 2190 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dln- 2190 (2342)
+..+.||..+|.+|.|++ ...++|+|.|.+|+.||+.+|..+.++.+.. ..++..++..++++.++.+..+++|+..
T Consensus 253 ~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 253 LVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred eEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 899999999999999987 7789999999999999999999998887654 6788899999999999999999999985
Q ss_pred --CceeeeecCCCCCCeEEEEEccCCCEEE-EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2191 --GVLVARAKLPLSGSIGCMEISLDGHSAL-IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2191 --G~~L~s~~~~Hs~~ItsLafSPDGk~La-SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
|..+.....+|.+.|.++.|+|...+.+ +|+ .|+++
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S-----------------------------------------~D~t~ 370 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS-----------------------------------------YDNTV 370 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEe-----------------------------------------cCCeE
Confidence 5666667777999999999999877655 443 38889
Q ss_pred EEEECCCCe-EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2268 CFLDLHTLK-VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2268 rIWDL~Tgk-~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
++||+++.+ +++.+. +|...|.++.|+. +..|++||.|++|+|+...
T Consensus 371 klWDvRS~k~plydI~-~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 371 KLWDVRSTKAPLYDIA-GHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccCCCcceeec-cCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999999987 899999 9999999999974 5579999999999999843
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=248.51 Aligned_cols=341 Identities=15% Similarity=0.153 Sum_probs=253.6
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
+++...++.|..|+.|++|+.... ..+-.+ +++-..|+++.|+..|..|++|+.|+.|.|||+-...-+..
T Consensus 74 ~~d~l~lAVGYaDGsVqif~~~s~------~~~~tf---ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 74 SDDILLLAVGYADGSVQIFSLESE------EILITF---NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred cCCcceEEEEecCceEEeeccCCC------ceeeee---cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 345556799999999999986542 111122 33445567799999999999999999999999988888889
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC---------------------Cccc-----
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG---------------------MGTP----- 2087 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~---------------------V~sv----- 2087 (2342)
+.||.+.|+..-|..+.++|+|.|.|+.|++||+.+..+..+. ..+.+. ++-+
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th-vd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH-VDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE-ecccceEEEEEEecceEEEEecCCceEEEEeecccc
Confidence 9999999999999988899999999999999999986543321 111111 1111
Q ss_pred ---------------------------cccCCCCCceeecCCC-------------------------------------
Q 000085 2088 ---------------------------GNSIGSSTPANASADK------------------------------------- 2103 (2342)
Q Consensus 2088 ---------------------------s~SpDG~~Las~s~D~------------------------------------- 2103 (2342)
...+++++++..+.|.
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence 1112222222222220
Q ss_pred -----------------------------------------ccccc---cCCc---------eEEecCCCCCeEEEEEec
Q 000085 2104 -----------------------------------------SRRRR---IEGP---------IHVLRGHHREILCCCVSS 2130 (2342)
Q Consensus 2104 -----------------------------------------s~~~~---i~~~---------l~~L~GHs~~Vt~VafSP 2130 (2342)
...|. .... ...+.||...|.+++||.
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 00000 0000 134568999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEE
Q 000085 2131 DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2131 Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLaf 2210 (2342)
+...++||+. +.+++|+..++++++++...-+.+..|-|.++.++.+..+|.+.+|++....+......|++.|++++.
T Consensus 384 d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 384 DSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred CceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 8887777765 689999999999999998877778889999999999999999999999765555555579999999999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCC-----------------------CCccccccccccccCCCCccCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-----------------------SGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-----------------------~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
+||++.+++||.|.+ .++|++.--. .-+..++|++.... ++.-|.++
T Consensus 463 ~pD~~g~vT~saDkt------VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La----VsLLdnTV 532 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKT------VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA----VSLLDNTV 532 (888)
T ss_pred cCCCCceEEecCCcE------EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE----EEeccCeE
Confidence 999999999998877 3444432111 11113333332222 22348999
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+||-+.+.+..-++. ||.-||.|+.+|||+..++|||.|..|+||-.+
T Consensus 533 kVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 533 KVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 999999999888887 999999999999999999999999999999743
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-23 Score=243.87 Aligned_cols=236 Identities=16% Similarity=0.257 Sum_probs=207.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.|..|.|+|+|+.|++|+..|.+.+|+..+-.....++.|..+|+++.|+++|.+++||+.+|.|++|+..-.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn------- 170 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN------- 170 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-------
Confidence 4677999999999999999999999998766556677899999999999999999999999999999998752
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH-REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs-~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.++.+++|. ..|++++|+|+...++|||.||+|+|||....+.-+
T Consensus 171 ----------------------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~ 216 (464)
T KOG0284|consen 171 ----------------------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER 216 (464)
T ss_pred ----------------------------------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh
Confidence 122345554 899999999999999999999999999999998888
Q ss_pred EEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2157 RLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2157 sL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
.+.+|+ +.++.|+|...+++.++.+..|++|+.....-......|...|..+.|++++++|+++|.
T Consensus 217 vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk------------ 284 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK------------ 284 (464)
T ss_pred eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC------------
Confidence 888886 899999999999999999999999998744333334459999999999999999999974
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEE
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVW 2313 (2342)
|..++++|+++.+.+.++. +|...|+++.|+|-. ..|.+|+.||.|..|
T Consensus 285 -----------------------------D~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 285 -----------------------------DQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred -----------------------------CceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEE
Confidence 4569999999999999999 999999999999954 567789999999999
Q ss_pred eCC
Q 000085 2314 TDP 2316 (2342)
Q Consensus 2314 Di~ 2316 (2342)
.++
T Consensus 335 ~v~ 337 (464)
T KOG0284|consen 335 VVG 337 (464)
T ss_pred ecc
Confidence 976
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=233.56 Aligned_cols=262 Identities=16% Similarity=0.192 Sum_probs=220.2
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRR 2107 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~ 2107 (2342)
...+.+.||..+|+.+-|+|+-..+++++.|++|++||..+++.... ..+|..++..++++..|+.+++++.|. +..|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~-LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERS-LRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhh-hhccccceeEEEEecCccEEEecCCccchhhe
Confidence 45667889999999999999999999999999999999999887443 467777799999999999999999987 5667
Q ss_pred ccC---CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCC
Q 000085 2108 RIE---GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQH 2182 (2342)
Q Consensus 2108 ~i~---~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdG 2182 (2342)
+.. .++..+.+|...|.+++|-|.|++|+|++.|.+|+.|++.+|.++.++.+|. +..+..+.||.+++....+.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 764 3567788999999999999999999999999999999999999999999987 78899999999999999999
Q ss_pred eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2183 TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2183 sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
++++|.+..+.-......|.-+|.|++|-|...+=-+....++. ..........
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~--------------------------~~~~~l~s~S 311 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST--------------------------NGGQVLGSGS 311 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC--------------------------CCccEEEeec
Confidence 99999997654444445599999999999875421111000000 0111122234
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|++|++||+.++.++.++. +|...|..++|+|.|+||+++.+|++++|||+.++
T Consensus 312 rDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred ccceEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 69999999999999999999 99999999999999999999999999999997665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=242.56 Aligned_cols=357 Identities=15% Similarity=0.165 Sum_probs=253.6
Q ss_pred CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEE
Q 000085 1966 GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLA 2045 (2342)
Q Consensus 1966 D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLA 2045 (2342)
.+.+.||+..+-.. .+++.....++++ ..|-...+.+++|+.|..||||++.+++.+.++..|.+-|.|++
T Consensus 34 nG~V~IWnyetqtm------VksfeV~~~PvRa---~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~ia 104 (794)
T KOG0276|consen 34 NGDVQIWNYETQTM------VKSFEVSEVPVRA---AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIA 104 (794)
T ss_pred cCeeEEEeccccee------eeeeeecccchhh---heeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeee
Confidence 35789998766222 2233333444544 67778888999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCc-cccccCC--ceEEecCCCC
Q 000085 2046 LSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKS-RRRRIEG--PIHVLRGHHR 2121 (2342)
Q Consensus 2046 fSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s-~~~~i~~--~l~~L~GHs~ 2121 (2342)
.+|...+++|+|.|-+|++||++..-.......+|...|..+++.| |.+.+++++-|.+ ..|..+. +..++.||..
T Consensus 105 vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek 184 (794)
T KOG0276|consen 105 VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK 184 (794)
T ss_pred ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence 9999999999999999999999987655555788999999999999 5677888888876 5577754 5788999999
Q ss_pred CeEEEEEecCC--CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2122 EILCCCVSSDL--GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2122 ~Vt~VafSPDg--~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
.|+||++-+-| .+++||+.|.+|+|||..+..|++++.+|. +..++|.|.=.+++.++.||++++|....-.+...
T Consensus 185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 99999998744 599999999999999999999999999985 78999999999999999999999999776544443
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
..-.-++|+|++-.+.+..++.|...|......+...=.......+.+.+................++ ++..|+.
T Consensus 265 Ln~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~-----ev~DgEr 339 (794)
T KOG0276|consen 265 LNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQK-----EVTDGER 339 (794)
T ss_pred hhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcc-----cccCCcc
Confidence 33356899999999999999999765552111110000000000011111110000000000000000 1222222
Q ss_pred EEE--Eec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCChhhhhhhhhccccCC-Ccc
Q 000085 2278 FHV--LKL-GEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGD-GLS 2337 (2342)
Q Consensus 2278 L~t--L~l-gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs~k~LdQLLk~GWegD-GLs 2337 (2342)
+.- -.+ ...-....++-+|+|+++++ +.||..+||..-.++.+...+-+...|..| +-.
T Consensus 340 L~LsvKeLgs~eiyPq~L~hsPNGrfV~V-cgdGEyiIyTala~RnK~fG~~~eFvw~~dsne~ 402 (794)
T KOG0276|consen 340 LPLSVKELGSVEIYPQTLAHSPNGRFVVV-CGDGEYIIYTALALRNKAFGSGLEFVWAADSNEF 402 (794)
T ss_pred ccchhhhccccccchHHhccCCCCcEEEE-ecCccEEEEEeeehhhcccccceeEEEcCCCCeE
Confidence 110 000 01112345778899986555 558999999977777778888888888888 443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=236.11 Aligned_cols=269 Identities=22% Similarity=0.264 Sum_probs=219.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++...+++++.|..|++|+.... . ..+-.++.+..+++.+ +.|.++++.+++.+.|+.+++|+++..+...++
T Consensus 185 ~~sdtlatgg~Dr~Ik~W~v~~~-k---~~~~~tLaGs~g~it~---~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 185 RNSDTLATGGSDRIIKLWNVLGE-K---SELISTLAGSLGNITS---IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred cCcchhhhcchhhhhhhhhcccc-h---hhhhhhhhccCCCcce---eeecCCCceEEeecCCCceeeeeccchhhhhhh
Confidence 34477889999999999985441 1 2233455555555555 999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.||++.|+++.|......+++|+.|.+|++||+....+..+..
T Consensus 258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l------------------------------------- 300 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL------------------------------------- 300 (459)
T ss_pred cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-------------------------------------
Confidence 9999999999999777679999999999999999865544321
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeCCce
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL 2193 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dlnG~~ 2193 (2342)
. ...+..|+.+ ...++||-.|++|++||++++.+.++...++ ++.+..+++|.-++...++..+.++++.+..
T Consensus 301 --~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 301 --P--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred --c--cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence 1 1122333332 5568899999999999999999999988765 7889999999888888889999999988766
Q ss_pred eeeecCC----CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2194 VARAKLP----LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2194 L~s~~~~----Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
+...... .....+.+.|||++.|+++||. ||.|+|
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~-----------------------------------------dgsv~i 413 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA-----------------------------------------DGSVYI 413 (459)
T ss_pred EEEEeeccccccccccceeEECCCCceeeeccC-----------------------------------------CCcEEE
Confidence 5544322 3345899999999999999973 778999
Q ss_pred EECCCCeEEEEEecCCCC-CeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2270 LDLHTLKVFHVLKLGEGQ-DITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~lgHs~-~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
|++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999998866655 699999999999999999999999994
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=239.96 Aligned_cols=285 Identities=14% Similarity=0.200 Sum_probs=233.5
Q ss_pred ceeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc
Q 000085 1951 PFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1951 ~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl 2030 (2342)
.+.+..+..++.++.+..+++|+..+... .+++.. .-+.|..|-|.+++++.|...|.+.|||+.+...
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~kc------iRTi~~-----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTLKC------IRTITC-----GYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCcce------eEEecc-----ccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 35556666666666777999999776222 121111 1345688999999999999999999999999999
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
+.++..|.+.|+.++.+||+..++|||.|.||++||+.--... | | . ......+
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-----------------~-g------t--~~k~lsl- 499 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-----------------P-G------T--QKKVLSL- 499 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc-----------------C-c------c--cceeeee-
Confidence 9999999999999999999999999999999999998652100 0 0 0 0000000
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
....++ .-++.|.|+.+||||++++.+=.|.+|+||-+.+-+..-++.||. +.++.+|||+..++.++.|..+++|-
T Consensus 500 ~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 500 KHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred ccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 011112 235789999999999999999999999999999999999999996 78888999999999999999999999
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
++-..-....+.|++.|.++.|.|...++.++|. |+.|+
T Consensus 579 LdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gK-----------------------------------------D~kvK 617 (888)
T KOG0306|consen 579 LDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGK-----------------------------------------DGKVK 617 (888)
T ss_pred cccchhhhhhhcccCceeEEEEcccceeEEEecC-----------------------------------------cceEE
Confidence 9855556666779999999999999888887763 78899
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
-||....+.+.++. +|...|+|++.+|+|.++++++.|.+|++|.-.
T Consensus 618 qWDg~kFe~iq~L~-~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 618 QWDGEKFEEIQKLD-GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred eechhhhhhheeec-cchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 99999999999999 999999999999999999999999999999843
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=251.95 Aligned_cols=298 Identities=15% Similarity=0.126 Sum_probs=229.5
Q ss_pred cCCCeEEecC--CCceEEEecCCCCC-CCccc--ccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC--
Q 000085 1955 QHGKASASPA--SGTFLRMFKGPGGS-GADEW--HFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG-- 2027 (2342)
Q Consensus 1955 ~~Gk~LaSsS--sD~tIRVwdg~tgs-~~~ew--~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t-- 2027 (2342)
++|..+++++ .|+.+++|+..... ...++ ..+.-+.....+..+++|+.|++||++||+|+.|+.|.||....
T Consensus 23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~ 102 (942)
T KOG0973|consen 23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIG 102 (942)
T ss_pred CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccC
Confidence 4567777887 77888899865422 11222 24666677777888999999999999999999999999999772
Q ss_pred --------c--------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC
Q 000085 2028 --------A--------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2028 --------g--------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp 2091 (2342)
| +.+.++.+|...|..++|+|++.+|+|+|.|++|.||+..+.
T Consensus 103 ~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--------------------- 161 (942)
T KOG0973|consen 103 SGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--------------------- 161 (942)
T ss_pred CcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---------------------
Confidence 1 245678999999999999999999999999999999998874
Q ss_pred CCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--------c
Q 000085 2092 GSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--------A 2163 (2342)
Q Consensus 2092 DG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--------v 2163 (2342)
..+.++.+|.+.|-.+.|.|-|++++|-+.|++|+||.+.+....+++..+- .
T Consensus 162 -------------------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 162 -------------------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred -------------------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence 3456789999999999999999999999999999999988877777776532 4
Q ss_pred EEEEEecCCcEEEEEe----CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC-CCCCCCCCcccccccC
Q 000085 2164 HAVSLSSEGVIMTWNK----LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN-SSSTNNGSYDNIQGLN 2238 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwds----sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~-DGs~d~~i~d~Lw~l~ 2238 (2342)
.-++|||||++++... ...++.+++-.+........+|..++.++.|+|. ++-.-. +|. .
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~---lfe~~~~ng~----~-------- 287 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK---LFERNNKNGT----S-------- 287 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH---HhccccccCC----c--------
Confidence 6789999999987652 2235677776666666667779999999999973 110000 000 0
Q ss_pred CCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2239 SKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2239 ~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
-.++ ........+..|++|.||.....+++..+..-....|..++|+|||..|++++.||+|.++.+.+
T Consensus 288 --------~~~~--~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 288 --------TQPN--CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred --------cCCC--cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 0000 00001112346999999999998888877655678899999999999999999999999999654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=212.97 Aligned_cols=267 Identities=16% Similarity=0.179 Sum_probs=218.9
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+|.+..++++|+++|+|++..+... ++.+.|. +-+.-++.+.|+..+++|+.|..|.+||+.+|+.++.+.
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~li------ktYsghG---~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALI------KTYSGHG---HEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred CCCEEEEcCCCceEEeeccccccee------eeecCCC---ceeeeccccccccccccCCCCceEEEEEcccCeeeeecc
Confidence 5778889999999999997764322 2233343 334457889999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
||.+.|+.+.|+.+...++|||.|.++++||.+... .+|+++
T Consensus 99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s--------------------------------------~ePiQi 140 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS--------------------------------------FEPIQI 140 (307)
T ss_pred cccceeeEEEecCcceEEEeccccceeEEEEcccCC--------------------------------------CCccch
Confidence 999999999999999999999999999999998731 256777
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA 2195 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~ 2195 (2342)
+....+.|.++.+. +..|++||.||+++.||++.|+.....-++++++++|++||+..+.+.-++.+++.+-....+.
T Consensus 141 ldea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred hhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 88788899998874 6789999999999999999999999999999999999999999999999999999998644444
Q ss_pred eecCCCCCCeEE--EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2196 RAKLPLSGSIGC--MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2196 s~~~~Hs~~Its--LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
....+|...=.. .+++....++++|+ .||.|++||+.
T Consensus 219 ~sYkGhkn~eykldc~l~qsdthV~sgS-----------------------------------------EDG~Vy~wdLv 257 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSDTHVFSGS-----------------------------------------EDGKVYFWDLV 257 (307)
T ss_pred HHhcccccceeeeeeeecccceeEEecc-----------------------------------------CCceEEEEEec
Confidence 445556554333 34555666777665 38889999999
Q ss_pred CCeEEEEEecCCCCC-eEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2274 TLKVFHVLKLGEGQD-ITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2274 Tgk~L~tL~lgHs~~-ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
....+..+. .++.. |++++++|.-..|++++.. .+..|.
T Consensus 258 d~~~~sk~~-~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 258 DETQISKLS-VVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred cceeeeeec-cCCceeEEeeecccCccceeEecCC-ceecee
Confidence 999999988 56665 8999999988777777644 455554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=216.24 Aligned_cols=228 Identities=15% Similarity=0.197 Sum_probs=197.8
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
+|++++.|.+||+|...+|.+..+++.....|..+.+.||++.|++++ ...|++||++++.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~n------------------ 72 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNN------------------ 72 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCC------------------
Confidence 799999999999999999999999997778899999999999999877 4689999999852
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEE
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSL 2168 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSf 2168 (2342)
..++.++.+|+..|++|.|..+|++++|||+||+++|||+|...+-+.+... .+..+..
T Consensus 73 --------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvl 132 (311)
T KOG0315|consen 73 --------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVL 132 (311)
T ss_pred --------------------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEe
Confidence 2467889999999999999999999999999999999999997777777653 4889999
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
.|+..-++.+.++|.|++|++..........+ ....|.++.+.|||.+++.+..
T Consensus 133 hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn------------------------- 187 (311)
T KOG0315|consen 133 HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN------------------------- 187 (311)
T ss_pred cCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC-------------------------
Confidence 99999999999999999999976544333334 5678999999999999997742
Q ss_pred ccccccccCCCCccCCCCeEEEEECCC------CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHT------LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~T------gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|..++|++-+ .+++.+++ .|...|..+.+|||+++|+++|.|.+++||+.++.
T Consensus 188 ----------------kG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 188 ----------------KGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ----------------CccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 35688888754 35677777 89999999999999999999999999999997765
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=235.21 Aligned_cols=228 Identities=21% Similarity=0.358 Sum_probs=191.2
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
.+|.|+.+ |...+++|..|++|+|||..+..++..+.||++.|.|+.|. .+.|+|||.|.||+|||++++.
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge----- 268 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE----- 268 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-----
Confidence 34555555 56789999999999999999999999999999999999995 6799999999999999999963
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--- 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--- 2153 (2342)
++.++.+|...|..+.|+ ..+++|+|.|.++.+||+....
T Consensus 269 -----------------------------------~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it 311 (499)
T KOG0281|consen 269 -----------------------------------PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDIT 311 (499)
T ss_pred -----------------------------------hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHH
Confidence 455678899999999996 5789999999999999997654
Q ss_pred EEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2154 LIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2154 lIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
+.+.+.+|....-.+.-|.++++..+.+.+|++|++..........+|...|-|+.+. |+++++|+.
T Consensus 312 ~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSS----------- 378 (499)
T KOG0281|consen 312 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----------- 378 (499)
T ss_pred HHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCC-----------
Confidence 2344566654333444455688888888999999988666666666799999999885 889998862
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVW 2313 (2342)
|.+|++||+..|.++..+. ||..-|.|+.|. .+.+++|+.||+|+||
T Consensus 379 ------------------------------DntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 379 ------------------------------DNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVW 425 (499)
T ss_pred ------------------------------CceEEEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEE
Confidence 7789999999999999999 999999999994 5679999999999999
Q ss_pred eCC
Q 000085 2314 TDP 2316 (2342)
Q Consensus 2314 Di~ 2316 (2342)
|..
T Consensus 426 dl~ 428 (499)
T KOG0281|consen 426 DLQ 428 (499)
T ss_pred ecc
Confidence 954
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-22 Score=221.15 Aligned_cols=276 Identities=15% Similarity=0.150 Sum_probs=235.5
Q ss_pred ceeEEEEEc---CCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1997 RSSAVVSIT---HDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1997 ~Svt~VafS---pDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
+.|--++|| |+|-+|++++.|+.--+-+-++|.-+.++.||.+.|+...+..+...-+|++.|=+-+|||.-++..+
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 344446665 68889999999999999999999999999999999999999999889999999999999999998877
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccc-ccc---CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRI---EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i---~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
+.+ .|..-+..++|+.|.+.+.+++.++..+ ++. ..+...+.+|.+.|..+-|+...+.++|.+.|++|++||.
T Consensus 95 hsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 95 HSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 765 4556688999999999999998887644 333 4467788999999999999999999999999999999999
Q ss_pred CCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2150 RRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2150 rTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
++|..++++.. +.+..+.+++||+++.... .+.|..|+.+. ..+.... ....|.+..++|+..++++|+.
T Consensus 173 rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGge----- 244 (334)
T KOG0278|consen 173 RTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGE----- 244 (334)
T ss_pred ccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc--CccccccccccCCCceEEecCc-----
Confidence 99999999875 5689999999999887653 46788999864 2334333 4567899999999988888852
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
|..++.||..+++.+..+..+|.++|.||.|+|||...++|+.|
T Consensus 245 ------------------------------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 245 ------------------------------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred ------------------------------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC
Confidence 67799999999999988744999999999999999999999999
Q ss_pred CcEEEEeCCCC
Q 000085 2308 KQLIVFTDPAL 2318 (2342)
Q Consensus 2308 GsIrVWDi~sL 2318 (2342)
|+|++|.....
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 99999995433
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=222.35 Aligned_cols=291 Identities=15% Similarity=0.148 Sum_probs=230.7
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+-++.+-+.++.+|.+|.+++.|.++.||-..+|+.+.++.||++.|+|+..+.+.++++|||.|.++++||+.+|+++.
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 33455569999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCcc------ccc---------cCCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSR------RRR---------IEGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~------~~~---------i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
+. ..+..+..+.|+.+|+.++....+... ..+ ...|...+..+...++.+-|.|-+..|++|.
T Consensus 89 ~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 89 TW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred Ee--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 54 456678888999999887666554221 111 2456888889999999999999999999999
Q ss_pred CCCcEEEEECCCCe-EEEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCE
Q 000085 2140 DSSDLLLHSIRRGR-LIRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGk-lIrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
.||.|.+||+++|+ .+.+... +.++.+++++|..+++.++.+.+-.+|+...-.+.... ....+|++.+++|...+
T Consensus 167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty-~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY-TTERPVNTAAISPLLDH 245 (327)
T ss_pred CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe-eecccccceecccccce
Confidence 99999999999985 4444443 45889999999999999999999999998764443322 25789999999999999
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
++.|+.....+.+. . ... ...-.-++|++-..+.+..++ +|-++|++|+|||
T Consensus 246 VilgGGqeA~dVTT---------T----------------~~r--~GKFEArFyh~i~eEEigrvk-GHFGPINsvAfhP 297 (327)
T KOG0643|consen 246 VILGGGQEAMDVTT---------T----------------STR--AGKFEARFYHLIFEEEIGRVK-GHFGPINSVAFHP 297 (327)
T ss_pred EEecCCceeeeeee---------e----------------ccc--ccchhhhHHHHHHHHHhcccc-ccccCcceeEECC
Confidence 98886222211100 0 000 000123455555556667777 9999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 000085 2297 DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+|+..++|++||.|++...+
T Consensus 298 dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCcccccCCCCceEEEEEec
Confidence 99999999999999998743
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=245.47 Aligned_cols=239 Identities=18% Similarity=0.203 Sum_probs=192.5
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC--------------------------------c--------------
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG--------------------------------A-------------- 2028 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t--------------------------------g-------------- 2028 (2342)
+-.++.++.||+||+|||+|+.|+.|+||.+.. .
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 345567899999999999999999999998654 0
Q ss_pred --------------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2029 --------------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2029 --------------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
+++..+.||++.|..|.||.+ ++|+|+|.|.||++|++....++
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL--------------------- 403 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECL--------------------- 403 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCccee---------------------
Confidence 123457899999999999954 69999999999999999875332
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCC
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEG 2172 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG 2172 (2342)
.+ ..|.+-||||+|+| |.++++|||-||.|+||++...+.+.-...+. ++.+|++|||
T Consensus 404 -------------------~~-F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG 463 (712)
T KOG0283|consen 404 -------------------KV-FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG 463 (712)
T ss_pred -------------------eE-EecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC
Confidence 22 35999999999999 68899999999999999998888776655555 7999999999
Q ss_pred cEEEEEeCCCeEEEEEeCCceeeeecCC---------CCCCeEEEEEccCCC--EEEEEeCCCCCCCCCcccccccCCCC
Q 000085 2173 VIMTWNKLQHTLSSFTLNGVLVARAKLP---------LSGSIGCMEISLDGH--SALIGVNSSSTNNGSYDNIQGLNSKQ 2241 (2342)
Q Consensus 2173 ~IlVwdssdGsI~I~dlnG~~L~s~~~~---------Hs~~ItsLafSPDGk--~LaSGS~DGs~d~~i~d~Lw~l~~~~ 2241 (2342)
+..+.+.-+|.+++|+..+..+...... |. .|+.+.|.|... .|+|.
T Consensus 464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS--------------------- 521 (712)
T KOG0283|consen 464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS--------------------- 521 (712)
T ss_pred ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec---------------------
Confidence 9999999999999999987554432211 33 789998886433 44432
Q ss_pred CCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC-CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2242 SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ-DITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2242 ~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~-~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|..|+|+|..+.+++..++..+.. .-....|+.||++|+++++|..|+||+.+..
T Consensus 522 ---------------------nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 522 ---------------------NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ---------------------CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 3788999999988888888833332 2356789999999999999999999997544
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=239.22 Aligned_cols=273 Identities=16% Similarity=0.142 Sum_probs=233.8
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
..++|+|...+|.++--.|.|++||+.-+.++..+..|.++|..++|+|++.+++||+.|-.|+||+..+..++.+. .+
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-~G 91 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-LG 91 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-cc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999998776665 57
Q ss_pred CCCCCccccccCCCCCceeecCCCcc---ccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSR---RRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--- 2153 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~---~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--- 2153 (2342)
|-..|..+.|++.-..+.+++.|.+. .|...+++.++.||...|.|..|+|..+.++|+|.|.+|+|||+..-+
T Consensus 92 HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 92 HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 78889999999999999999999764 367788999999999999999999999999999999999999985210
Q ss_pred --------------------------EEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceee--eecCCCCC
Q 000085 2154 --------------------------LIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA--RAKLPLSG 2203 (2342)
Q Consensus 2154 --------------------------lIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~--s~~~~Hs~ 2203 (2342)
..+.+.+|. +.-++|.|.-.+++.+..|..+++|..+....- ....+|.+
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 112345553 788899999999999999999999998753322 22345999
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
.|+|+-|+|...++++.| .|++|+|||+...+.++++.
T Consensus 252 nVssvlfhp~q~lIlSns-----------------------------------------EDksirVwDm~kRt~v~tfr- 289 (1202)
T KOG0292|consen 252 NVSSVLFHPHQDLILSNS-----------------------------------------EDKSIRVWDMTKRTSVQTFR- 289 (1202)
T ss_pred CcceEEecCccceeEecC-----------------------------------------CCccEEEEecccccceeeee-
Confidence 999999999999999765 37889999999999999998
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2284 GEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
...+..+.++.+|..+. +.++.|+.+.||...
T Consensus 290 rendRFW~laahP~lNL-fAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 290 RENDRFWILAAHPELNL-FAAGHDSGMIVFKLE 321 (1202)
T ss_pred ccCCeEEEEEecCCcce-eeeecCCceEEEEEc
Confidence 55678999999999984 456677777777743
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=212.12 Aligned_cols=257 Identities=20% Similarity=0.270 Sum_probs=208.8
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.++.+++|+..++. .......+. ..+..+.|+++++++++++.||.|++|++.+++.+..+.
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~------~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGE------LLRTLKGHT---GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCC------cEEEEecCC---cceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence 45677888889999999866522 111222232 334568999999999999999999999999988888899
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cccccc--CCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--EGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~~~ 2112 (2342)
+|...|.++.|++++.++++++.|+.|.+||+.++...... ..+...+.++.+++++..++++..++ ...|+. ...
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 99999999999999999999999999999999876544433 25666788999999988888777444 455665 456
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
...+..|...|.+++|+|++..+++++.||.|++||+++++.+..+..+. +..+++++++.+++.+..++.+++|++.
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 77788999999999999999999999999999999999999888885553 7889999999888888879999999997
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..........|...|.+++|++++.++++++.
T Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred CceeEEEccccCCcEEEEEECCCCCEEEEecC
Confidence 43333334468889999999999999998864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=252.54 Aligned_cols=236 Identities=14% Similarity=0.245 Sum_probs=195.1
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc----c----cceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEec
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGA----K----TLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tg----k----ll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl 2067 (2342)
..+++++|+|+|++|++|+.|+.|+||+..+. . ....+. +...|.+++|++ ++.+|++|+.||+|++||+
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 34667999999999999999999999997542 1 122233 346799999987 4789999999999999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrI 2146 (2342)
.++. .+..+.+|.+.|++++|+| ++.+|+||+.||+|++
T Consensus 563 ~~~~----------------------------------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i 602 (793)
T PLN00181 563 ARSQ----------------------------------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL 602 (793)
T ss_pred CCCe----------------------------------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEE
Confidence 7642 2445688999999999996 7899999999999999
Q ss_pred EECCCCeEEEEEecC-CcEEEEE-ecCCcEEEEEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2147 HSIRRGRLIRRLVGV-DAHAVSL-SSEGVIMTWNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh-~vssLSf-SpDG~IlVwdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
||++++..+..+..+ .+.++.| +++|..++.+..++.|++|++.... .......|...|+++.|. ++.++++|+.
T Consensus 603 Wd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~- 680 (793)
T PLN00181 603 WSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST- 680 (793)
T ss_pred EECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC-
Confidence 999999998888765 3667777 4579999999999999999986432 222334599999999997 7888988863
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC------CeEEEEEecCCCCCeEEEEEecC
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT------LKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T------gk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
|++|++||+.. .+++..+. +|...+++++|+++
T Consensus 681 ----------------------------------------D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~ 719 (793)
T PLN00181 681 ----------------------------------------DNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVS 719 (793)
T ss_pred ----------------------------------------CCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCC
Confidence 67799999874 35677887 89999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 000085 2298 NTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2298 G~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.+|++|+.||.|++|+..
T Consensus 720 ~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCEEEEEeCCCEEEEEECC
Confidence 9999999999999999953
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=234.64 Aligned_cols=240 Identities=14% Similarity=0.235 Sum_probs=212.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.|.++.++|....+.++-..|.|.|||.++...++.+.-..-+|.+..|-+-.+++++||.|..|+|++.+++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~------- 87 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG------- 87 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc-------
Confidence 3556999999999999999999999999999999999988999999999999999999999999999999985
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIr 2156 (2342)
..++.+..|.+.|.|++++|...+++|+|.|-+|++||...+ .+.+
T Consensus 88 ---------------------------------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q 134 (794)
T KOG0276|consen 88 ---------------------------------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ 134 (794)
T ss_pred ---------------------------------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee
Confidence 346678999999999999999999999999999999999865 6788
Q ss_pred EEecCC--cEEEEEec-CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC--CEEEEEeCCCCCCCCCc
Q 000085 2157 RLVGVD--AHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG--HSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2157 sL~gh~--vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG--k~LaSGS~DGs~d~~i~ 2231 (2342)
++.+|+ +-.++|.| |...++.++-|+++++|.+..........+|...|+|+.+-+-| .+|++|+.
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD--------- 205 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD--------- 205 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC---------
Confidence 999987 66778888 45677888899999999986544444444699999999998754 68998862
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIr 2311 (2342)
|..|+|||..+..|++++. ||...|..+.|+|.-..+++|++||+++
T Consensus 206 --------------------------------D~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 206 --------------------------------DLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPIIISGSEDGTVR 252 (794)
T ss_pred --------------------------------CceEEEeecchHHHHHHhh-cccccceEEEecCCCcEEEEecCCccEE
Confidence 6779999999999999999 9999999999999999999999999999
Q ss_pred EEeCCCCC
Q 000085 2312 VFTDPALS 2319 (2342)
Q Consensus 2312 VWDi~sLs 2319 (2342)
||+..+.+
T Consensus 253 iWhs~Ty~ 260 (794)
T KOG0276|consen 253 IWNSKTYK 260 (794)
T ss_pred EecCccee
Confidence 99976664
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-21 Score=213.51 Aligned_cols=235 Identities=19% Similarity=0.221 Sum_probs=199.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.++.|+-||++.++++.|.+|++|+...|.+++++.||...|..++.+.|...+++|+.|..|.+||+.+++
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----- 92 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK----- 92 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-----
Confidence 345669999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG--RL 2154 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG--kl 2154 (2342)
....+.||.+.|+.+.|+.+...+++|+.|.++++||.++. ++
T Consensus 93 -----------------------------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 93 -----------------------------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred -----------------------------------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence 34567999999999999999999999999999999999864 56
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2155 IRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2155 IrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
++.+........++.-.++.++.++.+|+++.|++.-..+..-. ...+|+|+.|++||+..++++.
T Consensus 138 iQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l------------ 203 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL------------ 203 (307)
T ss_pred cchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec------------
Confidence 77776544455556666777788888888888888643333333 4569999999999999998863
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCe--EEEEEecCCCEEEEEeCCCcEEE
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDI--TALALNKDNTNLLVSTADKQLIV 2312 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~I--tsLafSPDG~~LaSGSsDGsIrV 2312 (2342)
|+++++.|-.+|+.+..++ +|...- ...+++....++++|++||.|++
T Consensus 204 -----------------------------~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~ 253 (307)
T KOG0316|consen 204 -----------------------------DSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF 253 (307)
T ss_pred -----------------------------cceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEeccCCceEEE
Confidence 6779999999999999998 887543 34567777889999999999999
Q ss_pred EeC
Q 000085 2313 FTD 2315 (2342)
Q Consensus 2313 WDi 2315 (2342)
||.
T Consensus 254 wdL 256 (307)
T KOG0316|consen 254 WDL 256 (307)
T ss_pred EEe
Confidence 994
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-20 Score=236.16 Aligned_cols=248 Identities=14% Similarity=0.134 Sum_probs=186.5
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecC----------Ccccc---eecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEe
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSD----------GAKTL---ETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~----------tgkll---~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWD 2066 (2342)
+...++|+..+++++.+.....|+.. .|+.. ..+.||.+.|++++|+| ++++|+|||.|++|++||
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 34455555544555555555555533 33322 24789999999999999 889999999999999999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEE
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLL 2145 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIr 2145 (2342)
+.++.... ....++..+.+|...|.+++|+|++ .++++|+.|++|+
T Consensus 105 i~~~~~~~---------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 105 IPEEGLTQ---------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred cCCCcccc---------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 97632100 0123566789999999999999985 6899999999999
Q ss_pred EEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCC-eEEEEEccCCCEEEEEeC
Q 000085 2146 LHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGS-IGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2146 IWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~-ItsLafSPDGk~LaSGS~ 2222 (2342)
|||+++++.+..+.+|. +..++|+++|.+++.+..++.|++|++...........|.+. +..+.|.+++..+++++.
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 99999999999998765 788999999999999999999999999743333333446554 456788998888887653
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe-EEEEEecCCCCCeEEEEEecCCCEE
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VFHVLKLGEGQDITALALNKDNTNL 2301 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSPDG~~L 2301 (2342)
+.. .|+.|++||+++.. ++......+...+....|++++.+|
T Consensus 232 s~s-------------------------------------~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 232 SKS-------------------------------------QQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred CCC-------------------------------------CCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 222 27899999998754 4444442344566777899999999
Q ss_pred EEEe-CCCcEEEEeCCCC
Q 000085 2302 LVST-ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2302 aSGS-sDGsIrVWDi~sL 2318 (2342)
++|+ .||.|++|++.+.
T Consensus 275 ~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEEeCCCeEEEEEeeCC
Confidence 9887 5999999997654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-20 Score=235.53 Aligned_cols=222 Identities=14% Similarity=0.149 Sum_probs=179.1
Q ss_pred ceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCc-------ccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEec
Q 000085 1997 RSSAVVSITH-DKEIITGGHVDGSIKLLTSDGA-------KTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1997 ~Svt~VafSp-DGklLASGS~DGsIrVWDl~tg-------kll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl 2067 (2342)
..|.+++|+| ++++|++|+.|++|+|||+.++ ..+..+.+|...|.+++|+|++ ++|+||+.|++|+|||+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 4466799999 8899999999999999999765 3467789999999999999985 79999999999999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
.++. .+..+.+|...|++++|+|++.++++|+.||+|++|
T Consensus 156 ~tg~----------------------------------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIw 195 (493)
T PTZ00421 156 ERGK----------------------------------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII 195 (493)
T ss_pred CCCe----------------------------------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEE
Confidence 8742 234567899999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCC---cEEEEEecCCcEEEEEe----CCCeEEEEEeCC--ceeeeecCCCCCCeEEEEEccCCCEEE
Q 000085 2148 SIRRGRLIRRLVGVD---AHAVSLSSEGVIMTWNK----LQHTLSSFTLNG--VLVARAKLPLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~---vssLSfSpDG~IlVwds----sdGsI~I~dlnG--~~L~s~~~~Hs~~ItsLafSPDGk~La 2218 (2342)
|+++++.+.++.+|. ...+.|.+++..++... .++.+++|++.. ..+......+...+....|++++.+++
T Consensus 196 D~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 196 DPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred ECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEE
Confidence 999999999988875 23567788776665432 468999999863 222222222345666778999999999
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN 2298 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG 2298 (2342)
+|+. .|+.|++||+.+++.+......+..++.+++|.|..
T Consensus 276 lggk----------------------------------------gDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 276 IGSK----------------------------------------GEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEe----------------------------------------CCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 8751 278899999999998887765566788899988853
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=239.63 Aligned_cols=266 Identities=17% Similarity=0.263 Sum_probs=218.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..+++++.+.++++|+..++ ......+.+|.++ |.++++..-+.++++|+.|.+++|||..+|++..++.|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-----~~i~~~l~GH~g~---V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g 289 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-----YLILTRLVGHFGG---VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG 289 (537)
T ss_pred cCeEEecCCCceeEEeecccc-----eEEEeeccCCCCC---ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC
Confidence 566788999999999986552 1112224555555 45588888788999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
|...|.|+... ..++++||.|.+|+||++.++ ..++.+
T Consensus 290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~----------------------------------------~~l~l~ 327 (537)
T KOG0274|consen 290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG----------------------------------------ACLNLL 327 (537)
T ss_pred CCceEEEEEcc--CceEeeccCCceEEEEeccCc----------------------------------------ceEEEe
Confidence 99999999875 568999999999999999975 345667
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCc-ee
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGV-LV 2194 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~-~L 2194 (2342)
.+|.++|+|+..+ +.++++|+.||+|++||+.++++++++.+|.....++..++ ..++-+..|+.|++|++.+. ..
T Consensus 328 ~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c 405 (537)
T KOG0274|consen 328 RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKC 405 (537)
T ss_pred ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhh
Confidence 7899999999986 88999999999999999999999999999986655555556 88888888999999999876 44
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT 2274 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T 2274 (2342)
......|..-+.++.+ .+++|++++ .|++|++||..+
T Consensus 406 ~~tl~~h~~~v~~l~~--~~~~Lvs~~-----------------------------------------aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 406 IHTLQGHTSLVSSLLL--RDNFLVSSS-----------------------------------------ADGTIKLWDAEE 442 (537)
T ss_pred hhhhcCCccccccccc--ccceeEecc-----------------------------------------ccccEEEeeccc
Confidence 4444457777765554 477788664 278899999999
Q ss_pred CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2275 LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2275 gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++++.++...|...|+++++. ...+++++.||++++||.++..
T Consensus 443 ~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred CceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 999999993367889988887 4669999999999999977664
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-21 Score=217.11 Aligned_cols=277 Identities=14% Similarity=0.160 Sum_probs=216.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCC------------c------ccceecccCCCCeEEEEecCCCCEEEEEeCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDG------------A------KTLETASGHCAPVTCLALSSDSNFLVTGSQD 2059 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~t------------g------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~D 2059 (2342)
.+.+.+|++||.++|+|+.|.+|+|.|++. | -.++++..|.+.|+++.|+|....|++|+.|
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 356699999999999999999999999861 1 1357889999999999999999999999999
Q ss_pred CceEEEeccCCcccccc-ccCCCCCCccccccCCCCCceeecCCCcc-ccccCCceE-----EecCCCCCeEEEEEecCC
Q 000085 2060 TTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKSR-RRRIEGPIH-----VLRGHHREILCCCVSSDL 2132 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~-~~~i~~~l~-----~L~GHs~~Vt~VafSPDg 2132 (2342)
++|+++|+......+.+ .......+.+++|+|.|.+++++....+. .+++..... --.+|++.|++|.+++.+
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG 273 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence 99999999875433333 33455678999999999999888776553 344332211 124699999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec-C---CcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC-C---CC
Q 000085 2133 GVVVSCSDSSDLLLHSIRRGRLIRRLVG-V---DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP-L---SG 2203 (2342)
Q Consensus 2133 ~lLaSGS~DGtIrIWDLrTGklIrsL~g-h---~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~-H---s~ 2203 (2342)
++.++||.||.|++||--+++|++++.. | ++....|+.+|++++....+..+++|.+. |+.+....-. . ..
T Consensus 274 ~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~ 353 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK 353 (430)
T ss_pred cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence 9999999999999999999999998853 3 36778899999999999999999999986 4444332110 0 00
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
--+...|+....|++.- + -..++++-||.++...+..+..
T Consensus 354 ~rtqAvFNhtEdyVl~p-----------------------------D-----------Eas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 354 HRTQAVFNHTEDYVLFP-----------------------------D-----------EASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred hhhhhhhcCccceEEcc-----------------------------c-----------cccCceeeccccchhhhhhccc
Confidence 01122233333333311 0 0246799999999998888888
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2284 GEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
+|++.++.+.-||.+.-+++|+.|-.+++|-
T Consensus 394 gHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 394 GHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 9999999999999999999999999999997
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=238.96 Aligned_cols=279 Identities=23% Similarity=0.323 Sum_probs=214.8
Q ss_pred eEEEEEcCCCCEEEEEE--cCCcEEEEecCC------------cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEE
Q 000085 1999 SAVVSITHDKEIITGGH--VDGSIKLLTSDG------------AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILL 2064 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS--~DGsIrVWDl~t------------gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrV 2064 (2342)
+..++++|||..+++|+ .|+.++||+.+. .+.+.+...|.+.|+|+.|++||++||+||.|+.|.|
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 55699999999999999 999999998642 2345567789999999999999999999999999999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtI 2144 (2342)
|+.... ... . +.++.++.......+.+..+.+|...|..++|+|++.+++++|.|++|
T Consensus 96 W~~~~~-~~~-----------~----------~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 96 WERAEI-GSG-----------T----------VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred eeeccc-CCc-----------c----------cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence 998741 000 0 011111222222235778899999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC------CCCCeEEEEEccCCCE
Q 000085 2145 LLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP------LSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~------Hs~~ItsLafSPDGk~ 2216 (2342)
.|||.++.+.+..+.+|. +.-++|.|-|++++.-..|+++.+|.+....+...... ....+..+.|||||+|
T Consensus 154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred EEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence 999999999999999987 67899999999999999999999999764333322221 3456889999999999
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
|++.-. . . ..-.++.|.+-.+.+.-..+- ||.+++.++.|+|
T Consensus 234 las~nA--~------------n-----------------------~~~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP 275 (942)
T KOG0973|consen 234 LASPNA--V------------N-----------------------GGKSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNP 275 (942)
T ss_pred ecchhh--c------------c-----------------------CCcceeEEEecCCceeeeeee-cCCCceEEEEeCh
Confidence 997631 0 0 013467788877777777777 9999999999998
Q ss_pred --------CC-----C----EEEEEeCCCcEEEEeCCCCC-hhhh-----hhhhhccccCCCcc
Q 000085 2297 --------DN-----T----NLLVSTADKQLIVFTDPALS-LKVV-----DQMLKLGWEGDGLS 2337 (2342)
Q Consensus 2297 --------DG-----~----~LaSGSsDGsIrVWDi~sLs-~k~L-----dQLLk~GWegDGLs 2337 (2342)
+| . .+++|+.|++|-||.....+ .-++ .......|.+||+.
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~ 339 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFS 339 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCe
Confidence 11 1 57899999999999964432 1111 23346689999974
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-19 Score=229.86 Aligned_cols=236 Identities=16% Similarity=0.161 Sum_probs=182.6
Q ss_pred EEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC
Q 000085 2013 GGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2013 SGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp 2091 (2342)
+|+.++.|++|+......+..+.+|.+.|++++|+|+ +.+|+|||.|++|+|||+.++.....
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---------------- 112 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---------------- 112 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----------------
Confidence 4678899999998877788889999999999999997 78999999999999999976321000
Q ss_pred CCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEe
Q 000085 2092 GSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLS 2169 (2342)
Q Consensus 2092 DG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfS 2169 (2342)
....++..+.+|...|++++|+|++.. +++++.||+|+|||+++++.+..+..+ .+..++|+
T Consensus 113 ----------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slsws 176 (568)
T PTZ00420 113 ----------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWN 176 (568)
T ss_pred ----------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEEC
Confidence 001345567899999999999999875 579999999999999999887777543 47899999
Q ss_pred cCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEE-----EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2170 SEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGC-----MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2170 pDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~Its-----LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
++|.+++.+..++.+++|++...........|.+.+.+ ..|++++.++++++.+..
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~------------------- 237 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN------------------- 237 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-------------------
Confidence 99999999999999999999855444444557766543 345689999998874332
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCC-CeEEEEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHVLKL-GEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~tL~l-gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.+++|+|||+++ .+++..+.. .+.+.+......++|.++++|+.|+.|++|++..
T Consensus 238 ------------------~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 238 ------------------NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred ------------------CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 156899999985 566666542 2223334444456689999999999999999643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=217.76 Aligned_cols=245 Identities=18% Similarity=0.179 Sum_probs=208.3
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRR 2107 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~ 2107 (2342)
+..+.+.||.++|.|+++.|...+++|||.|++++|||+.++....+ ..++...+..+++|+-..++.+++.|+. ..|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt-ltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT-LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe-ecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 34567899999999999999999999999999999999999865444 3567778888999999999999988875 447
Q ss_pred cc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCe
Q 000085 2108 RI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2108 ~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGs 2183 (2342)
++ .+.+..+.||-..|.|++.+|..+.++||+.|.+++|||+++...+..+.+|. +..+.+.+-...++.++.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 76 45678899999999999999999999999999999999999999999999986 556666665666777888999
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
|++|++...........|...|.+++.+|....+++++.
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~----------------------------------------- 339 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP----------------------------------------- 339 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----------------------------------------
Confidence 999998644444444559999999999999988887752
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
..|+-|++..|..++.+. +|.+-|++++.+.|| .+++|++.|.+.+||-...
T Consensus 340 -dnik~w~~p~g~f~~nls-gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 340 -DNIKQWKLPEGEFLQNLS-GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred -ccceeccCCccchhhccc-cccceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 247889999999899877 999999999999888 5889999999999996544
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=227.84 Aligned_cols=335 Identities=16% Similarity=0.144 Sum_probs=252.4
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCC
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC 2038 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt 2038 (2342)
.+.++-..+.|++|+-.-+.. -.....|.+.++. ++|+|++.++++|+.|..|+||++.+.+++.++.||-
T Consensus 23 wILtslHsG~IQlWDYRM~tl------i~rFdeHdGpVRg---v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 23 WILTSLHSGVIQLWDYRMGTL------IDRFDEHDGPVRG---VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred EEEEeecCceeeeehhhhhhH------HhhhhccCCccce---eeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 345555667999998654222 2233446666665 9999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccCC------
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG------ 2111 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~------ 2111 (2342)
+-|..+.|++...+++|+|.|.||+||++.+..++... .+|...|.|..|+|....+++++-|.+ +.|++.+
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~ 172 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK 172 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence 99999999999999999999999999999998776544 678889999999999999988888865 4465410
Q ss_pred -------------------------ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCC--
Q 000085 2112 -------------------------PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--LIRRLVGVD-- 2162 (2342)
Q Consensus 2112 -------------------------~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--lIrsL~gh~-- 2162 (2342)
..+.+.||+..|+-++|+|...+++||+.|..|++|-+...+ .+-+..+|.
T Consensus 173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn 252 (1202)
T KOG0292|consen 173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN 252 (1202)
T ss_pred CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCC
Confidence 135778999999999999999999999999999999986543 355666764
Q ss_pred cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC
Q 000085 2163 AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS 2242 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~ 2242 (2342)
+.++-|+|...+++.++.|+.|++|+++.+.-...+....++.++++.+|..+.+++|..+|. .++.+... .
T Consensus 253 Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm-------~VFkleRE-r 324 (1202)
T KOG0292|consen 253 VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGM-------IVFKLERE-R 324 (1202)
T ss_pred cceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCce-------EEEEEccc-C
Confidence 788999999999999999999999999754433333335689999999999999999875444 22333211 0
Q ss_pred CccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC----CCeEEEEEecCCCEEEEE-e-CCCcEEEEeCC
Q 000085 2243 GTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG----QDITALALNKDNTNLLVS-T-ADKQLIVFTDP 2316 (2342)
Q Consensus 2243 ~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs----~~ItsLafSPDG~~LaSG-S-sDGsIrVWDi~ 2316 (2342)
...+.+. ...+-+.|..|+.+|+.+.+-.......+. .++.++.++|....++.+ . ..|..-++.++
T Consensus 325 pa~~v~~-------n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 325 PAYAVNG-------NGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred ceEEEcC-------CEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 1111111 111223478899999988655544443343 578999999976554444 3 34555566655
Q ss_pred CC
Q 000085 2317 AL 2318 (2342)
Q Consensus 2317 sL 2318 (2342)
.-
T Consensus 398 k~ 399 (1202)
T KOG0292|consen 398 KD 399 (1202)
T ss_pred Cc
Confidence 44
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=225.62 Aligned_cols=263 Identities=18% Similarity=0.226 Sum_probs=216.3
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-CCCCe
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-HCAPV 2041 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-Ht~~V 2041 (2342)
.+.+..+.+|+..++.... ...+ +...++++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|
T Consensus 193 Valg~~vylW~~~s~~v~~------l~~~---~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rv 263 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTE------LCSF---GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRV 263 (484)
T ss_pred EEecceEEEEecCCCceEE------eEec---CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCcee
Confidence 3445678889876632111 1111 245577799999999999999999999999999999999998 99999
Q ss_pred EEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCC
Q 000085 2042 TCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHR 2121 (2342)
Q Consensus 2042 tcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~ 2121 (2342)
-|++|. +..+.+|+.|+.|..+|++..... ..++.+|..
T Consensus 264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~---------------------------------------~~~~~~H~q 302 (484)
T KOG0305|consen 264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHV---------------------------------------VSTLQGHRQ 302 (484)
T ss_pred EEEecc--CceEEEecCCCcEEEEEEecchhh---------------------------------------hhhhhcccc
Confidence 999998 778999999999999999874321 113688999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCC-cEEEEE--eCCCeEEEEEeC-Cceee
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEG-VIMTWN--KLQHTLSSFTLN-GVLVA 2195 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG-~IlVwd--ssdGsI~I~dln-G~~L~ 2195 (2342)
.|..+.|++|+.++++|+.|+.+.|||......+..+..|. +.+++|+|-. .+++.+ ..|++|++|+.+ |..+.
T Consensus 303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID 382 (484)
T ss_pred eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec
Confidence 99999999999999999999999999998888888888875 7889999854 455555 467899999987 44444
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
... ....|.+|.|++..+-++++. | ..++.|.||+..+.
T Consensus 383 ~vd--tgsQVcsL~Wsk~~kEi~sth--G-------------------------------------~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 383 SVD--TGSQVCSLIWSKKYKELLSTH--G-------------------------------------YSENQITLWKYPSM 421 (484)
T ss_pred ccc--cCCceeeEEEcCCCCEEEEec--C-------------------------------------CCCCcEEEEecccc
Confidence 332 568999999999998888663 1 12568999999999
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+.+..+. +|...|..++++|||..+++|+.|.++++|+.-.
T Consensus 422 ~~~~~l~-gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 422 KLVAELL-GHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ceeeeec-CCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999998 9999999999999999999999999999999543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=218.19 Aligned_cols=232 Identities=19% Similarity=0.310 Sum_probs=201.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+.+++|-.||+++++|...|.|+|||..+...++.+.+|+.+|..+.|+|+ +..+++|+.|+.+++||+.+..
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~------ 144 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY------ 144 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE------
Confidence 456899999999999999999999998877788999999999999999996 5678899999999999998842
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCC-eEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRG-RLI 2155 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTG-klI 2155 (2342)
....+.+|++.|.|.+|+|.. .+++|||.||+|++||+++. ..+
T Consensus 145 ----------------------------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 145 ----------------------------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred ----------------------------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence 133678999999999999964 58899999999999999987 677
Q ss_pred EEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2156 RRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2156 rsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
.++.. +.+..+.+-|.|.+++... ...+++|++. |..+......|...|+|+.+..++..|++|+.
T Consensus 191 ~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL----------- 258 (487)
T KOG0310|consen 191 VELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL----------- 258 (487)
T ss_pred EEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc-----------
Confidence 77764 5688899999988777653 5689999997 66665555569999999999999999998863
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVW 2313 (2342)
|+.++|||+.+.+.++.+. ..++|.+++.+||++.++.|..||.+.+-
T Consensus 259 ------------------------------D~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 259 ------------------------------DRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ------------------------------ccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceeeee
Confidence 7889999999999999887 67899999999999999999999998887
Q ss_pred e
Q 000085 2314 T 2314 (2342)
Q Consensus 2314 D 2314 (2342)
+
T Consensus 307 r 307 (487)
T KOG0310|consen 307 R 307 (487)
T ss_pred h
Confidence 4
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-19 Score=199.86 Aligned_cols=232 Identities=14% Similarity=0.197 Sum_probs=192.5
Q ss_pred eeEEEEEcCC-CCEEEEEEcCCcEEEEecCCc---ccceec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1998 SSAVVSITHD-KEIITGGHVDGSIKLLTSDGA---KTLETA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1998 Svt~VafSpD-GklLASGS~DGsIrVWDl~tg---kll~tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
.+..++|+|- |.+||+|+.|..||+|+...+ .+...+ .+|+..|..++|+|.|++|++||.|.|+.||.-..+.
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e- 94 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE- 94 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc-
Confidence 3456999999 899999999999999998853 334444 4799999999999999999999999999999765431
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.+++.++.||.++|.|++|+++|.+|++|+.|..|-||.+..+
T Consensus 95 -------------------------------------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 95 -------------------------------------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred -------------------------------------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 1456789999999999999999999999999999999999754
Q ss_pred ---eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC-C--ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2153 ---RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN-G--VLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2153 ---klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln-G--~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
.++..+..|. +..+.|+|.-.+++..+.+.+|++|.-. + -.......+|...|.+++|++.|..|++++.
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd-- 215 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD-- 215 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC--
Confidence 4677777764 7889999999999999999999999865 2 2233344458889999999999999998863
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
|++++||-.. ..+...|...+..+.|. ...|+++
T Consensus 216 ---------------------------------------D~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ 249 (312)
T KOG0645|consen 216 ---------------------------------------DGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIASG 249 (312)
T ss_pred ---------------------------------------CcceEeeeec-----cCcchhcccceEeeeec--ccceEec
Confidence 6778999765 33344678899999998 4469999
Q ss_pred eCCCcEEEEeC
Q 000085 2305 TADKQLIVFTD 2315 (2342)
Q Consensus 2305 SsDGsIrVWDi 2315 (2342)
+.|+.|++|..
T Consensus 250 ggD~~i~lf~~ 260 (312)
T KOG0645|consen 250 GGDDAIRLFKE 260 (312)
T ss_pred cCCCEEEEEEe
Confidence 99999999984
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=224.36 Aligned_cols=344 Identities=16% Similarity=0.159 Sum_probs=260.9
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA 2039 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~ 2039 (2342)
++-++.++.+++|+..++....++ . .....++++.-+|--.++|.|..+|+|.++++..++.+.+++.-.+
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f--~-------~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g 245 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTF--Q-------EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG 245 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEe--c-------ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc
Confidence 345677789999998774332221 1 1123456688888888999999999999999999999999985569
Q ss_pred CeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc-ccc------CC
Q 000085 2040 PVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRI------EG 2111 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i------~~ 2111 (2342)
.|+.++|..||+. +++|+..|.+.+||++...........|.+++....+-+....+.+.+.|+... |-. .+
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 9999999999975 667777899999999997766666667788888888888888888877775533 322 24
Q ss_pred ceEEecCCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCC-------Ce---------------------EEEE-----
Q 000085 2112 PIHVLRGHHREILCCCVS-SDLGVVVSCSDSSDLLLHSIRR-------GR---------------------LIRR----- 2157 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafS-PDg~lLaSGS~DGtIrIWDLrT-------Gk---------------------lIrs----- 2157 (2342)
.+..-.||..+..|+.|. .+|..+.+++.|++.+.+++.. ++ .+..
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 466678999999999998 6788999999999888776531 00 0000
Q ss_pred ---------------------------------EecC-------CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2158 ---------------------------------LVGV-------DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2158 ---------------------------------L~gh-------~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
+... .+.+++.++.|++.+.+...|.|.+|++........
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 0000 136788999999999999999999999986555444
Q ss_pred c---CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc---cccccc---cccccCCCCccCCCCeEE
Q 000085 2198 K---LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT---EDFDLA---SDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2198 ~---~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~---iaFspd---~~~s~ss~~ias~DGsIr 2268 (2342)
. ..|.++|++++...-++.+++++.+|- ..+|++....... ...+.. .........++..|-.|.
T Consensus 486 f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi------lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 486 FGDSPAHKGEVTGLAVDGTNRLLVSAGADGI------LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred cccCccccCceeEEEecCCCceEEEccCcce------EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 4 249999999999999999999998887 5567766654100 011111 111222233344788999
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++|+.+.+.+..+. +|+..|++++|||||++|++++.|++|++||+++..
T Consensus 560 vvD~~t~kvvR~f~-gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 560 VVDVVTRKVVREFW-GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred EEEchhhhhhHHhh-ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 99999999999999 999999999999999999999999999999988763
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=207.71 Aligned_cols=261 Identities=18% Similarity=0.183 Sum_probs=215.1
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
|+|..+++++.|..|-+|+... .....| .+.+|++++.. +.|..|++.|++++.|.+|+.||.++|+.+..+
T Consensus 57 P~gs~~aSgG~Dr~I~LWnv~g-dceN~~----~lkgHsgAVM~---l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~ 128 (338)
T KOG0265|consen 57 PDGSCFASGGSDRAIVLWNVYG-DCENFW----VLKGHSGAVME---LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH 128 (338)
T ss_pred CCCCeEeecCCcceEEEEeccc-ccccee----eeccccceeEe---eeeccCCCEEEEecCCceEEEEecccceeeehh
Confidence 5678899999999999998543 333334 23456666544 899999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cccccc--C
Q 000085 2035 SGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--E 2110 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~ 2110 (2342)
++|.+-|..+.-+.-| ..+.||+.|+|++|||+++...++++ .....+.++.|..++..+.+++-|+ +..|+. .
T Consensus 129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN 206 (338)
T ss_pred ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc--ccceeEEEEEecccccceeeccccCceeeeccccC
Confidence 9999999999855444 46778999999999999976555443 2344577888888888888877764 455766 4
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----CeEEEEEecCC------cEEEEEecCCcEEEEEeC
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR----GRLIRRLVGVD------AHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT----GklIrsL~gh~------vssLSfSpDG~IlVwdss 2180 (2342)
...+++.||.+.|+.+..+++|.++.+-+.|.++++||++- .+++..+.++. ...++|||+++.+-.+..
T Consensus 207 d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~ 286 (338)
T KOG0265|consen 207 DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA 286 (338)
T ss_pred cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc
Confidence 56899999999999999999999999999999999999984 35677787753 346789999999999999
Q ss_pred CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2181 QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2181 dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
+..+++|+..+..+.....+|.+.|++++|+|...++.+++.|..
T Consensus 287 dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 287 DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence 999999999887777777779999999999999999998875543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-20 Score=215.50 Aligned_cols=279 Identities=13% Similarity=0.195 Sum_probs=213.3
Q ss_pred cceeccccCcceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEE
Q 000085 1987 RALAFASSGIRSSAVVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065 (2342)
Q Consensus 1987 ~sls~hs~gI~Svt~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVW 2065 (2342)
..+.+|..|+ .|++=+|.. ..+++|+.||.|+|||+....++.++..|.+.|..|++.. ..++|++.|.+|+.|
T Consensus 60 ~~L~gHrdGV---~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 60 GSLDGHRDGV---SCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred hhcccccccc---chhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 3444555554 458888887 6899999999999999999999999999999999999985 789999999999999
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCcccccc--CCceEEecCCCCCeEEEEEecC-CCEEEEEeCCC
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRI--EGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSS 2142 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i--~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DG 2142 (2342)
.+... ..+++ .....+..+.-+..+..+++++. .+..|+. ..|+..+.--.+.|.++.|+|. ...|++|+.|+
T Consensus 135 k~~~~-p~~ti--lg~s~~~gIdh~~~~~~FaTcGe-~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 135 KIDGP-PLHTI--LGKSVYLGIDHHRKNSVFATCGE-QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred eccCC-cceee--eccccccccccccccccccccCc-eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 98763 33332 11222333333333444444443 3445554 4678888888889999999996 45678888999
Q ss_pred cEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2143 DLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
.|.+||++++..++.+.. -....+||+|++-.++.+..|..++.|++..- ........|...|.+++|||.|+-+++|
T Consensus 211 sIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred ceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 999999999998876543 34678999998888888899999999997531 1112233488999999999999999988
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCE
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTN 2300 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~ 2300 (2342)
|. |.+|+||.++.+.....+....-..|.|+.||.|.++
T Consensus 291 sy-----------------------------------------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 291 SY-----------------------------------------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred cc-----------------------------------------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence 73 6779999988765433332222357999999999999
Q ss_pred EEEEeCCCcEEEEeC
Q 000085 2301 LLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2301 LaSGSsDGsIrVWDi 2315 (2342)
+++|+.|+.|++|..
T Consensus 330 i~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKA 344 (433)
T ss_pred EEecCCCcceeeeec
Confidence 999999999999984
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=190.13 Aligned_cols=276 Identities=18% Similarity=0.193 Sum_probs=215.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecC------Ccc-----c----ceecccCCCCeEEEEecCCCCEEEEEeCCCce
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSD------GAK-----T----LETASGHCAPVTCLALSSDSNFLVTGSQDTTI 2062 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~------tgk-----l----l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTV 2062 (2342)
.+.+++|+|.|.+.+.|+...++||..+. .+. + .+.-+.|.+.|.|.+|+|+|++|+|||.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 34569999999999999999999997542 111 1 12335689999999999999999999999999
Q ss_pred EEEeccCCcccccc----ccCCCCCCccccccC----CCCCceeecCCCccc----cccCCceEEecCCCCCeEEEEEec
Q 000085 2063 LLWRIHRAFTSRTG----TIEPSSGMGTPGNSI----GSSTPANASADKSRR----RRIEGPIHVLRGHHREILCCCVSS 2130 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~----~~~~~~~V~svs~Sp----DG~~Las~s~D~s~~----~~i~~~l~~L~GHs~~Vt~VafSP 2130 (2342)
++..++...+..+. ..-|.+.+..++|-. .|..++++....... ...+...+.+.||++.|.++ ++-
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-ysw 192 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSW 192 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEe
Confidence 99988765443322 334556666666643 234455555443322 23367789999999999887 456
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEec---------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCC
Q 000085 2131 DLGVVVSCSDSSDLLLHSIRRGRLIRRLVG---------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPL 2201 (2342)
Q Consensus 2131 Dg~lLaSGS~DGtIrIWDLrTGklIrsL~g---------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~H 2201 (2342)
++-++++|+.|.+|++||++-..++.++.. ..+..+++.|.|++++.+..+....+|++.|....+...+|
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH 272 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence 789999999999999999999999888753 12678999999999999999999999999988877778889
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC----eE
Q 000085 2202 SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL----KV 2277 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg----k~ 2277 (2342)
...|.|+.|+|...|+++++. |..|++-|+... -+
T Consensus 273 sadir~vrfsp~a~yllt~sy-----------------------------------------d~~ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 273 SADIRCVRFSPGAHYLLTCSY-----------------------------------------DMKIKLTDLQGDLAHELP 311 (350)
T ss_pred ccceeEEEeCCCceEEEEecc-----------------------------------------cceEEEeecccchhhcCc
Confidence 999999999999999999974 445666666421 12
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.++. .|...+..+.|+|..-.+++.+.|.++.+|..+
T Consensus 312 ~~vv~-ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMVVA-EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEE-eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 23333 688888899999999889999999999999854
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=200.30 Aligned_cols=239 Identities=18% Similarity=0.198 Sum_probs=204.1
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC--CCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~t~ 2076 (2342)
++++.|+.+|.++++++.|.+++|||..+|+.+.++..+...|..++|....+.++.+|. |.+|+.-++.+.
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN------ 90 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN------ 90 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC------
Confidence 556999999999999999999999999999999999999889999999888888887776 889999988874
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
+.++.+.||...|+.++.+|-++.++|++.|++|++||++..++..
T Consensus 91 ----------------------------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 91 ----------------------------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred ----------------------------------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce
Confidence 3466789999999999999999999999999999999999988888
Q ss_pred EEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC---CceeeeecCC--CCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2157 RLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN---GVLVARAKLP--LSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2157 sL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln---G~~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+......+++++|+|-+++.+.....|.+|++. ..+....... .....+.|.|||||++++.++.
T Consensus 137 ~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--------- 207 (311)
T KOG1446|consen 137 LLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--------- 207 (311)
T ss_pred EEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC---------
Confidence 8887777899999999999999888899999985 2233333222 4678899999999999998862
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCC---eEEEEEecCCCEEEEEeCCC
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQD---ITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~---ItsLafSPDG~~LaSGSsDG 2308 (2342)
.+.+++.|.-+|..+.++. ++... --+.+|+||++++++|+.||
T Consensus 208 --------------------------------~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg 254 (311)
T KOG1446|consen 208 --------------------------------ASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDG 254 (311)
T ss_pred --------------------------------CCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCCcEEEEecCCC
Confidence 4568899999999888887 44322 25778999999999999999
Q ss_pred cEEEEeCCCCC
Q 000085 2309 QLIVFTDPALS 2319 (2342)
Q Consensus 2309 sIrVWDi~sLs 2319 (2342)
+|.+|+.....
T Consensus 255 ~i~vw~~~tg~ 265 (311)
T KOG1446|consen 255 TIHVWNLETGK 265 (311)
T ss_pred cEEEEEcCCCc
Confidence 99999975543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=215.43 Aligned_cols=292 Identities=14% Similarity=0.184 Sum_probs=220.1
Q ss_pred ccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc----cceec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1993 SSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK----TLETA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1993 s~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk----ll~tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
.++...|.++++.|.|..|++|+.|.+|++||+.... ..+.+ ..-+..|.++.|++.|..|+..+.....+|+|-
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 3456678889999999999999999999999987532 22222 223457999999999999999998899999997
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrI 2146 (2342)
....... ++...+++ ..+..-+||...++|.+|+|+. ..++|++.||+++|
T Consensus 244 dG~~~~e--------------~~KGDQYI--------------~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 244 DGFEIVE--------------FSKGDQYI--------------RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred CCceeee--------------eeccchhh--------------hhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 6532111 11101111 1123458999999999999974 57899999999999
Q ss_pred EECCCCe-EEEEEec-------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee---eecCCCCC--CeEEEEEccC
Q 000085 2147 HSIRRGR-LIRRLVG-------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA---RAKLPLSG--SIGCMEISLD 2213 (2342)
Q Consensus 2147 WDLrTGk-lIrsL~g-------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~---s~~~~Hs~--~ItsLafSPD 2213 (2342)
||+...+ .++.+.. ..++.++|++||..++.++.+|.|++|+..+..+. .....|.. .|+||.||+|
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 9997643 3333432 12688999999999999999999999997543222 22233777 9999999999
Q ss_pred CCEEEEEeCCCCCCCCCcccccccCCCC--------------CCccccccccccccCCCCc--cCCCCeEEEEECCCCeE
Q 000085 2214 GHSALIGVNSSSTNNGSYDNIQGLNSKQ--------------SGTEDFDLASDQSVDNNRF--DFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2214 Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~--------------~~~iaFspd~~~s~ss~~i--as~DGsIrIWDL~Tgk~ 2277 (2342)
|++|++-+.|.+ .++|++.... .+-++|+|+......+... ....|.+++||..+.+.
T Consensus 376 g~~LlSRg~D~t------LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 376 GNYLLSRGFDDT------LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred cchhhhccCCCc------eeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 999999888887 4566665533 3345788876554433332 34577999999999999
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++.+. -.+..|..+.|+|--++|++|+.||.++||-.++.+
T Consensus 450 v~ki~-i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 450 VYKID-ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred EEEec-CCCceEEEEeecchhhheeeecCCCceEEEECcccc
Confidence 99998 457789999999999999999999999999877665
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.4e-19 Score=215.48 Aligned_cols=239 Identities=15% Similarity=0.296 Sum_probs=200.7
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC---CCEEEEEeCCCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD---SNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD---G~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+.+++++|+|+.||+|..-|+++||++..-+....+..|...|.|+.|+.. .++|+++|+|+.|.|+|+....
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny--- 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY--- 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc---
Confidence 4567999999999999999999999999998888899999999999999852 4789999999999999997631
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCC-
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL--GVVVSCSDSSDLLLHSIRR- 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg--~lLaSGS~DGtIrIWDLrT- 2151 (2342)
.+++++.+|...|++|.|...| ..+++++.|..|.+-..+.
T Consensus 538 ------------------------------------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~ 581 (1080)
T KOG1408|consen 538 ------------------------------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA 581 (1080)
T ss_pred ------------------------------------chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc
Confidence 3466789999999999998876 6789999998887543332
Q ss_pred --CeEE----EEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC---CCCCeEEEEEccCCCEEEEEeC
Q 000085 2152 --GRLI----RRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP---LSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2152 --GklI----rsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~---Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|... +++.....+.+.+.|..++++....|..|++|++........+.+ |.+....+...|.|.|+++..
T Consensus 582 ~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc- 660 (1080)
T KOG1408|consen 582 SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC- 660 (1080)
T ss_pred cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee-
Confidence 2211 112222367899999999999999999999999974443333333 778899999999999999774
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEE
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLL 2302 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~La 2302 (2342)
+ |.++.|+|..+++++.... ||+..|+.+.|.+|.++|+
T Consensus 661 --s--------------------------------------dktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 661 --S--------------------------------------DKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred --c--------------------------------------CCceEEEEeccchhhhhhc-Ccchheeeeeecccchhhe
Confidence 2 7889999999999999999 9999999999999999999
Q ss_pred EEeCCCcEEEEeCCC
Q 000085 2303 VSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2303 SGSsDGsIrVWDi~s 2317 (2342)
+.+.||.|.||.++.
T Consensus 700 SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecCCceEEEEECch
Confidence 999999999999764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=216.91 Aligned_cols=263 Identities=17% Similarity=0.252 Sum_probs=207.7
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEE-EEEcC-CCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAV-VSITH-DKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~-VafSp-DGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
+.++..+++++.|+++++|.... .+|.-...+..+. ..+.+ +++.+ ++-.+++|+.|++|.+|...+..++
T Consensus 22 ~~~~~~i~s~sRd~t~~vw~~~~----~~~l~~~~~~~~~---g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 22 VTDGVCIISGSRDGTVKVWAKKG----KQYLETHAFEGPK---GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred ecCCeEEeecCCCCceeeeeccC----cccccceecccCc---ceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence 44556688899999999998544 2332111122222 22222 66664 5557999999999999999999999
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
.++.||...|+|++...++. ++|||+|.|++||.....
T Consensus 95 ~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l----------------------------------------- 132 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL----------------------------------------- 132 (745)
T ss_pred hhhhccccceeeeecCCcCc-eEecccccceEEecchhh-----------------------------------------
Confidence 99999999999999887777 999999999999987552
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
...+.+|+..|+++++-|++ .++|||.|.+|++|.- ++++++|.+|. ++.+++-+++.++- ...+|.|+.|++
T Consensus 133 -~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS-csNDg~Ir~w~~ 207 (745)
T KOG0301|consen 133 -VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS-CSNDGSIRLWDL 207 (745)
T ss_pred -hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEe-ecCCceEEEEec
Confidence 23368999999999998888 7899999999999984 88999999986 67888888776544 457888888988
Q ss_pred CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2190 NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2190 nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
.|..+.+. .+|..-|+++....++..+++++ .|++++|
T Consensus 208 ~ge~l~~~-~ghtn~vYsis~~~~~~~Ivs~g-----------------------------------------EDrtlri 245 (745)
T KOG0301|consen 208 DGEVLLEM-HGHTNFVYSISMALSDGLIVSTG-----------------------------------------EDRTLRI 245 (745)
T ss_pred cCceeeee-eccceEEEEEEecCCCCeEEEec-----------------------------------------CCceEEE
Confidence 87666543 45999999999888888888775 2788999
Q ss_pred EECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2270 LDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.. ++.+.+. .-...|+++.+-++|. |++|+.||.||||...
T Consensus 246 W~~~--e~~q~I~-lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 246 WKKD--ECVQVIT-LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eecC--ceEEEEe-cCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 9987 6777776 2344799999988887 8899999999999965
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-18 Score=219.60 Aligned_cols=245 Identities=9% Similarity=0.054 Sum_probs=176.3
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC-CCEEEEEEcCCcEEEEecCCcc--------ccee
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD-KEIITGGHVDGSIKLLTSDGAK--------TLET 2033 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD-GklLASGS~DGsIrVWDl~tgk--------ll~t 2033 (2342)
++.++.+++|+.... .....+..|. ..|.+++|+|+ +.+|++|+.|++|+|||+.++. .+..
T Consensus 50 GG~~gvI~L~~~~r~------~~v~~L~gH~---~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRK------PPVIKLKGHT---SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred CCceeEEEeeecCCC------ceEEEEcCCC---CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 445678899974331 1112233343 45667999997 7899999999999999997642 2346
Q ss_pred cccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2034 ASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
+.+|...|++++|+|++.. |+||+.|++|+|||+.++..
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---------------------------------------- 160 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---------------------------------------- 160 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE----------------------------------------
Confidence 7899999999999999875 57999999999999987521
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-------EEEEEecCCcEEEEEeCC----
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDA-------HAVSLSSEGVIMTWNKLQ---- 2181 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~v-------ssLSfSpDG~IlVwdssd---- 2181 (2342)
...+. |...|.+++|+++|.++++++.|+.|+|||+++++.+.++.+|.. ....+++++..++....+
T Consensus 161 ~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 161 AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCc
Confidence 11222 456799999999999999999999999999999999999988752 122356888877776544
Q ss_pred CeEEEEEeC--CceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2182 HTLSSFTLN--GVLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2182 GsI~I~dln--G~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
+.+++|++. +..+...... +.+.+......++|.++++|+
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk------------------------------------- 282 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK------------------------------------- 282 (568)
T ss_pred cEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE-------------------------------------
Confidence 379999987 3334332221 233333444455688888775
Q ss_pred CccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC
Q 000085 2259 RFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN 2298 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG 2298 (2342)
.|+.|++|++..+.....-...+..++.+++|.|..
T Consensus 283 ----GD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 283 ----GDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ----CCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 278899999987653222222356788999999965
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=198.93 Aligned_cols=237 Identities=19% Similarity=0.264 Sum_probs=193.1
Q ss_pred cCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCC--EEEEEeCCCceEEEeccCCc
Q 000085 1994 SGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN--FLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1994 ~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~--~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
.+..+++++++ +|.++|+|+.|-+|+|||..+...+..+-.|.+.|+|+.|.++-. .|++|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W- 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW- 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-
Confidence 34555666666 589999999999999999999999999999999999999998765 9999999999999998763
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
..+..+++|.+.|+.++++|.+++.++.+.|+.++.||+-+
T Consensus 118 ---------------------------------------~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 118 ---------------------------------------ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred ---------------------------------------EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 34667899999999999999999999999999999999999
Q ss_pred CeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2152 GRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2152 GklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
|+.-..+.- +..+.+.|+|.|..++...++ .|-+|.+....+.... .....+.|+.|- ++..+++|+.
T Consensus 159 Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i-~~~~r~l~~~~l-~~~~L~vG~d-------- 227 (362)
T KOG0294|consen 159 GRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI-ENPKRILCATFL-DGSELLVGGD-------- 227 (362)
T ss_pred CccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh-hccccceeeeec-CCceEEEecC--------
Confidence 887665553 456789999999977766554 5678887643222111 123457777775 4566666652
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE--ecCCCEEEEEeCCC
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL--NKDNTNLLVSTADK 2308 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf--SPDG~~LaSGSsDG 2308 (2342)
|+.|.+||..++.+...+. +|...|.++.+ .|++.+|++++.||
T Consensus 228 ---------------------------------~~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 228 ---------------------------------NEWISLKDTDSDTPLTEFL-AHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ---------------------------------CceEEEeccCCCccceeee-cchhheeeeEEEecCCceEEEEeccCc
Confidence 5679999999999888888 99999999984 46789999999999
Q ss_pred cEEEEeCCC
Q 000085 2309 QLIVFTDPA 2317 (2342)
Q Consensus 2309 sIrVWDi~s 2317 (2342)
.|+|||...
T Consensus 274 ~I~vWd~~~ 282 (362)
T KOG0294|consen 274 FIKVWDIDM 282 (362)
T ss_pred eEEEEEccc
Confidence 999999653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=206.07 Aligned_cols=242 Identities=17% Similarity=0.261 Sum_probs=211.6
Q ss_pred cccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 1992 ASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1992 hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
|......++++...+....+.+|+.|..+.++|..+++.+.++.||...|+.+.++++...++++|.|..|+||......
T Consensus 215 H~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 215 HSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred eccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 33344455668888887899999999999999999999999999999999999999999999999999999999887632
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.......|..+|+.+..+|.|.++++++.||+..+.|+++
T Consensus 295 ----------------------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~ 334 (506)
T KOG0289|consen 295 ----------------------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS 334 (506)
T ss_pred ----------------------------------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccC
Confidence 2234577999999999999999999999999999999999
Q ss_pred CeEEEEEecC----CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2152 GRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2152 GklIrsL~gh----~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
|.++...... +.++.+|+|||.++..+..++.+++|++..+.....+.+|.++|..++|+.+|-||++++.
T Consensus 335 g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----- 409 (506)
T KOG0289|consen 335 GSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----- 409 (506)
T ss_pred CcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec-----
Confidence 9988776542 3688999999999999999999999999865544445559999999999999999999863
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
|++|++||++..+.+.++......+|.++.|.+.|++|+.++.|
T Consensus 410 ------------------------------------d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 410 ------------------------------------DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred ------------------------------------CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce
Confidence 67799999999998888886666789999999999999999988
Q ss_pred CcEEEEe
Q 000085 2308 KQLIVFT 2314 (2342)
Q Consensus 2308 GsIrVWD 2314 (2342)
=.|++++
T Consensus 454 l~Vy~~~ 460 (506)
T KOG0289|consen 454 LQVYICK 460 (506)
T ss_pred eEEEEEe
Confidence 8888887
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=197.92 Aligned_cols=238 Identities=13% Similarity=0.224 Sum_probs=180.1
Q ss_pred CcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCC-cccc-eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 1995 GIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDG-AKTL-ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1995 gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~t-gkll-~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
.-.++.+++||| ...++++|+|||+||+|+++. |..+ +....|.++|.|++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 334567799999 555888999999999999986 4443 3456799999999999999999999999999999999852
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCC--EEEEEeCCCcEEEEEC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLG--VVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~--lLaSGS~DGtIrIWDL 2149 (2342)
...+..|.++|.++.|-+... .|+|||.|.+|+.||.
T Consensus 106 -----------------------------------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 106 -----------------------------------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred -----------------------------------------eeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 344577999999999987655 8999999999999999
Q ss_pred CCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee--eecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2150 RRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA--RAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2150 rTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~--s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
|....+.++...+ .+.+.+-...+.+.+..+..|.+|++.+.... ...-+..-.+.||++..|....+.|+..|.
T Consensus 145 R~~~pv~t~~LPe-RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-- 221 (347)
T KOG0647|consen 145 RSSNPVATLQLPE-RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-- 221 (347)
T ss_pred CCCCeeeeeeccc-eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce--
Confidence 9999998887654 34445555567777778888889998543322 222225668999999999888888874433
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--eEEEEEecCCC---------CCeEEEEEec
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--KVFHVLKLGEG---------QDITALALNK 2296 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--k~L~tL~lgHs---------~~ItsLafSP 2296 (2342)
+.|..+..+ +.-.+++ -|. -.|++|+|+|
T Consensus 222 ---------------------------------------v~iq~id~~~~~~nFtFk-CHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 222 ---------------------------------------VAIQYIDDPNPKDNFTFK-CHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred ---------------------------------------EEEEecCCCCccCceeEE-EeccCCCCCCceEEecceEeec
Confidence 333333322 1111222 121 2588999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 000085 2297 DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
....|+|.|.||++.+||-+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ccceEEEecCCceEEEecch
Confidence 99999999999999999944
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=214.90 Aligned_cols=341 Identities=14% Similarity=0.151 Sum_probs=235.7
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~ 2032 (2342)
+.++++.+++.|+.|++|+........+-.+..++..| ...++-++...+|+.|++++.|.+|++|+...+ -++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~H---sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHH---SDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhh---HhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh
Confidence 45667889999999999986542221111112222233 344555788889999999999999999999877 5788
Q ss_pred ecccCCCCeEEEEe-cCCCCEEEEEeCCCceEEEeccCCcc--cccc--------ccCCCCCCccccccCCCCCceeecC
Q 000085 2033 TASGHCAPVTCLAL-SSDSNFLVTGSQDTTILLWRIHRAFT--SRTG--------TIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2033 tL~GHt~~VtcLAf-SPDG~~LaSGS~DGTVrVWDl~tg~~--i~t~--------~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
++..|++-|.|+++ .++...+||||-|+.|.+||++++.. +... ..++..++++++.++.|..+++++.
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 99999999999999 78889999999999999999998632 2211 2256678889999999988888776
Q ss_pred CCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEE
Q 000085 2102 DKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2102 D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlV 2176 (2342)
.+. +.|+. .+.+..++||++.|.++..++||..++|+|.||+|++||+...+|+.++..|. +..+..+++=..+.
T Consensus 192 ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 654 44554 56678899999999999999999999999999999999999999999998775 67777788778888
Q ss_pred EEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2177 WNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2177 wdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
.+.++|.|..-++..............+|..+..+...+-+-+++.++....| ...... .+.+....-.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW------~~~~~~----~l~~s~~~~~- 340 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW------KLEPDI----ALSVSGDLDF- 340 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec------CCcccc----ccccCCCCCc-
Confidence 88888988877775532222222345567777666444333344445553333 222111 0000000000
Q ss_pred CCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2257 NNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
...|....+.+... .+-.+++ .+.+|..-++-.|.++++|-..+|.+.+||+-
T Consensus 341 ----~~T~~~~~~~~~~~-tp~~vi~--Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 341 ----FSTDSNNHSCDLTN-TPDSVIP--GGAAIKKHAMLNDKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred ----ccccCCCccccccC-CCceecc--CchhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence 00122222222211 2223333 23356666777799999999999999999953
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=192.99 Aligned_cols=272 Identities=13% Similarity=0.098 Sum_probs=218.1
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce--ecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE--TASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~--tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
+..|+|+.+|..+++|+.|+++.||+++..+... ...||.+.|-.++|+|. ...+++++.|.+|++||++.+++...
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 4449999999999999999999999998876554 45789999999999984 57899999999999999999887665
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccc-cccCC-ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRIEG-PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i~~-~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
. .....-..+.++|+|.+++++..+.... .+..+ .+..-......+.-++|+-++++++-....|+|.|.....-+
T Consensus 103 i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk 180 (313)
T KOG1407|consen 103 I--ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK 180 (313)
T ss_pred e--eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence 4 2334445678999999998887764432 22211 111112234567888999888888877778999999999999
Q ss_pred EEEEEecCCc--EEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2154 LIRRLVGVDA--HAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2154 lIrsL~gh~v--ssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+.++..|.. .++.|+|+|++++.+..+..+.+|+++.-.-.+....++-+|..+.||.||++|++||.
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE--------- 251 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE--------- 251 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc---------
Confidence 9999999975 56678999999999999999999999764433333348899999999999999998873
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC----
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD---- 2307 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD---- 2307 (2342)
|..|-|=++.+|..+..++ +.++...|+|+|....|+-++.|
T Consensus 252 --------------------------------Dh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~~d 297 (313)
T KOG1407|consen 252 --------------------------------DHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKDGD 297 (313)
T ss_pred --------------------------------cceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCCCc
Confidence 5668888899999988887 88999999999999999877654
Q ss_pred -----CcEEEEeC
Q 000085 2308 -----KQLIVFTD 2315 (2342)
Q Consensus 2308 -----GsIrVWDi 2315 (2342)
|.+++|-.
T Consensus 298 ~~reag~vKiFG~ 310 (313)
T KOG1407|consen 298 SNREAGTVKIFGL 310 (313)
T ss_pred cccccceeEEecC
Confidence 56777753
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=194.07 Aligned_cols=266 Identities=16% Similarity=0.204 Sum_probs=205.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc--CCcEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV--DGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~--DGsIrVWDl~tgkll~ 2032 (2342)
.+|..+++++.|.++++|+...+. +.+++..+..++.. ++|......+..++. |.+||.-++.+.+.++
T Consensus 24 ~~G~~litss~dDsl~LYd~~~g~------~~~ti~skkyG~~~---~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 24 DDGLLLITSSEDDSLRLYDSLSGK------QVKTINSKKYGVDL---ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred CCCCEEEEecCCCeEEEEEcCCCc------eeeEeecccccccE---EEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 357788888899999999976532 23445555556554 788777776666665 9999999999999999
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
.+.||...|+.++.+|-+..++|+|.|++|++||++...+..
T Consensus 95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg-------------------------------------- 136 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG-------------------------------------- 136 (311)
T ss_pred EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce--------------------------------------
Confidence 999999999999999999999999999999999998643321
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eEEEEEec-----CCcEEEEEecCCcEEEEEeCCCeEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG--RLIRRLVG-----VDAHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG--klIrsL~g-----h~vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.+ +...-..++|+|+|-++|++.....|++||+|.- .+..++.- .+...+.||+||+.++.....+.++
T Consensus 137 --~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 137 --LL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred --EE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 11 1222346789999999999998889999999863 33344432 2367899999999999999888888
Q ss_pred EEEe-CCceeeeecCC-CCC-CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2186 SFTL-NGVLVARAKLP-LSG-SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2186 I~dl-nG~~L~s~~~~-Hs~-~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
+.+. .|..+...... ... ---...|+|||+++++|+.
T Consensus 213 ~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~---------------------------------------- 252 (311)
T KOG1446|consen 213 LLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD---------------------------------------- 252 (311)
T ss_pred EEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC----------------------------------------
Confidence 8875 45543332221 111 2256789999999998862
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
||+|.+|++++++.+..+...+..++.++.|+|.-.++++++ ..+.+|-
T Consensus 253 -dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 253 -DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWL 301 (311)
T ss_pred -CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEe
Confidence 788999999999999999944899999999999887777664 5677776
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-19 Score=217.36 Aligned_cols=233 Identities=16% Similarity=0.214 Sum_probs=198.2
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcc------cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAK------TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgk------ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
|.+++|.+|+.||.|++|++.... .+.+++.|.++|..++...+|+.|+|+|.|.||++|+...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence 456689999999999999976422 467889999999999999999999999999999999988741
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEE-ecCCCEEEEEeCCCcEEEEECCCC--eEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCV-SSDLGVVVSCSDSSDLLLHSIRRG--RLIR 2156 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Vaf-SPDg~lLaSGS~DGtIrIWDLrTG--klIr 2156 (2342)
.-+..++..|.+.|.|+++ -++..++||||.|+.|.+||+.+| +.+.
T Consensus 107 ------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~ 156 (735)
T KOG0308|consen 107 ------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVA 156 (735)
T ss_pred ------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhh
Confidence 0134467889999999999 788899999999999999999988 3444
Q ss_pred EEe---------cC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2157 RLV---------GV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2157 sL~---------gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
++. ++ .++.++..+.|.+++.+...+.+++|+.....-.....+|...|.++..++||..+++||.
T Consensus 157 s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS--- 233 (735)
T KOG0308|consen 157 SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS--- 233 (735)
T ss_pred hccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC---
Confidence 332 22 3688899999999999999999999998744333334479999999999999999998862
Q ss_pred CCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2226 TNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2226 ~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS 2305 (2342)
||+|++||+...++++++. .|...|+++..+|+-.++++|+
T Consensus 234 --------------------------------------DgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 234 --------------------------------------DGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred --------------------------------------CceEEeeeccccceeeeEE-eccCceEEEeeCCCcceEEecC
Confidence 7889999999999999998 8999999999999999999999
Q ss_pred CCCcEEEEeCCCC
Q 000085 2306 ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2306 sDGsIrVWDi~sL 2318 (2342)
.||.|..=|+.+.
T Consensus 275 rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 275 RDGNIYRTDLRNP 287 (735)
T ss_pred CCCcEEecccCCc
Confidence 9999999886553
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-19 Score=208.13 Aligned_cols=260 Identities=13% Similarity=0.119 Sum_probs=196.6
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|+++|+++.|.+.-+|...... .+.+-.++.+ +..+|..+.||||.++|++++.|-.+.+||+.+|.+...+
T Consensus 234 ~nGkyLAsaSkD~Taiiw~v~~d~---~~kl~~tlvg---h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y 307 (519)
T KOG0293|consen 234 HNGKYLASASKDSTAIIWIVVYDV---HFKLKKTLVG---HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY 307 (519)
T ss_pred CCCeeEeeccCCceEEEEEEecCc---ceeeeeeeec---ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence 579999999999999999854311 1233334444 4456677999999999999999999999999999887766
Q ss_pred c-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc-ccccCCc
Q 000085 2035 S-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR-RRRIEGP 2112 (2342)
Q Consensus 2035 ~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~-~~~i~~~ 2112 (2342)
. +|...+.|++|.|||..+++||.|++|..||++.... ..-.......+..++.++||+.+.....|... .......
T Consensus 308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 4 4568999999999999999999999999999987431 11112223557889999999998776666433 2332222
Q ss_pred eEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcE----EEEE-ecCCcEEEEEeCCCeEEE
Q 000085 2113 IHV-LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAH----AVSL-SSEGVIMTWNKLQHTLSS 2186 (2342)
Q Consensus 2113 l~~-L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vs----sLSf-SpDG~IlVwdssdGsI~I 2186 (2342)
+.. +.....+|++.++|.|++++++-=.+..+.+||+.....++.+.||... .-|| ..+..+++.++.|++|++
T Consensus 387 ~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 387 VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE
Confidence 111 3445678999999999999999999999999999988888888887521 1233 345578888899999999
Q ss_pred EEeCCceeeeecCCCCCCeEEEEEccCCC-EEEEEe
Q 000085 2187 FTLNGVLVARAKLPLSGSIGCMEISLDGH-SALIGV 2221 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS 2221 (2342)
|......+.....+|...|+||+|+|... .+++||
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccC
Confidence 99865555555667999999999999654 455554
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=198.04 Aligned_cols=284 Identities=17% Similarity=0.244 Sum_probs=211.2
Q ss_pred ceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1988 ALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1988 sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
.+.+|..+|-. ++......++.+++.|.+.+||.+++|+|+.++.||.+.|.|++|++.+.+++|+|.|++..||..
T Consensus 143 e~~GHkDGiW~---Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 143 ELEGHKDGIWH---VAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hhcccccceee---ehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 34445555544 555555558999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCcccccc--ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2068 HRAFTSRTG--TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLL 2145 (2342)
Q Consensus 2068 ~tg~~i~t~--~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIr 2145 (2342)
.-....... ...+.+.- ....+ |...-...+........+..|+..+.||.+.|.++.|-..|+.+++++.|.+..
T Consensus 220 av~~~vP~~~a~~~hSsEe-E~e~s-De~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEE-EEEHS-DEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred hhcCcCCCCCCCCCCCchh-hhhcc-cccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 432111110 00000000 00000 000000000001111123457889999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2146 LHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2146 IWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+||+++|..+..+.+|+ .+.++..|..++++...++.+.++|++.... -...+.+|...|+++.|..|.+ +++|+
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgS- 375 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGS- 375 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecC-
Confidence 99999999999999986 5778889999999999999999999986322 2233445999999999987654 55554
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCCCEE
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL-KVFHVLKLGEGQDITALALNKDNTNL 2301 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG~~L 2301 (2342)
.|.+|+|||+++. .++.++. -..+++.++++..+..|
T Consensus 376 ----------------------------------------DDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iI 413 (481)
T KOG0300|consen 376 ----------------------------------------DDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPII 413 (481)
T ss_pred ----------------------------------------CCceEEEeeeccccCcceeee--cCCccceeEeecCCceE
Confidence 2788999999885 4566666 56789999999999989
Q ss_pred EEEeCCCcEEEEeCCCCCh
Q 000085 2302 LVSTADKQLIVFTDPALSL 2320 (2342)
Q Consensus 2302 aSGSsDGsIrVWDi~sLs~ 2320 (2342)
+.--.+..|++||..+...
T Consensus 414 AiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 414 AIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred EeccCCceEEEEecCCCcc
Confidence 8888999999999776643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-18 Score=196.08 Aligned_cols=289 Identities=12% Similarity=0.131 Sum_probs=217.6
Q ss_pred cccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEE
Q 000085 1985 FPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILL 2064 (2342)
Q Consensus 1985 ~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrV 2064 (2342)
+|..+..+-.... ..|+.|++.|.+||.|+.||.|.|||+.|...-+.+.+|..+|+|++||+||+.|+|+|.|..|++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 4444444333333 568999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCc--eeecCCCccccccCCceEEecCCC------CCeEEEEEecCCCEEE
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTP--ANASADKSRRRRIEGPIHVLRGHH------REILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~L--as~s~D~s~~~~i~~~l~~L~GHs------~~Vt~VafSPDg~lLa 2136 (2342)
||+..+.+.+.+ ..+..+....++|..... ++.............+.+.+-... ....+..|.+.|++++
T Consensus 92 wDl~~gs~l~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 92 WDLLKGSPLKRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred EeccCCCceeEE--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 999998766554 445677778888754433 322222222222222333332111 1223446888999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee----eecC-------CCC
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA----RAKL-------PLS 2202 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~----s~~~-------~Hs 2202 (2342)
+|...|.+.++|..+-+++..++-. .+..+.++..|..++.+..+..|+.|++..-... .... -..
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 9999999999999999999887643 3678899999999999999999999997521100 0000 023
Q ss_pred CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe
Q 000085 2203 GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK 2282 (2342)
Q Consensus 2203 ~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~ 2282 (2342)
.+-.+++||.+|.|+++|+. ....++||.-..|.+++.+.
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~----------------------------------------~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSA----------------------------------------RAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred hhhhheeecCCccEEEeccc----------------------------------------cceeEEEEecCCcceeeeec
Confidence 35578899999999998861 13569999999999999988
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
...+.....+.|+|-...+++- ..|.+++|....
T Consensus 290 G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 290 GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred CCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 4444678899999998878777 889999999543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-19 Score=209.74 Aligned_cols=264 Identities=19% Similarity=0.318 Sum_probs=203.4
Q ss_pred eccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1990 AFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1990 s~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
.+|.+.++. +.|-++...|++|+.|..|++|++..++ .+.++.|-.++|+.+.|.+++.++++++.|+++++|++
T Consensus 172 d~h~gev~~---v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 172 DAHEGEVHD---VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hccccccce---eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 345555544 8888888899999999999999998776 67889999999999999999999999999999999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
.... ..++|.||++.|+++.|......+++|+.|.+|++|
T Consensus 249 d~~r----------------------------------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 249 DSLR----------------------------------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred cchh----------------------------------------hhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 8853 345678999999999998877779999999999999
Q ss_pred ECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2148 SIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2148 DLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
|+..+.|.+++-. .....++.+ +..++.+-.+++|+.|++.+....... +..+.|+++..+++|..+++.+
T Consensus 289 Dl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv-~~gg~vtSl~ls~~g~~lLsss----- 360 (459)
T KOG0288|consen 289 DLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV-PLGGRVTSLDLSMDGLELLSSS----- 360 (459)
T ss_pred hhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe-ecCcceeeEeeccCCeEEeeec-----
Confidence 9999998887643 334444443 444555556666777776543322221 2346999999999999998765
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC---CCCCeEEEEEecCCCEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG---EGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg---Hs~~ItsLafSPDG~~LaS 2303 (2342)
.|..+.+.|+.+.+..+.+... .....+.+.|||++.|+++
T Consensus 361 ------------------------------------RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 361 ------------------------------------RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred ------------------------------------CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence 2667889999988887776521 2345899999999999999
Q ss_pred EeCCCcEEEEeCCCCChhhh------h-hhhhccccCCCcccccc
Q 000085 2304 STADKQLIVFTDPALSLKVV------D-QMLKLGWEGDGLSPLIK 2341 (2342)
Q Consensus 2304 GSsDGsIrVWDi~sLs~k~L------d-QLLk~GWegDGLspLis 2341 (2342)
||.||.|+||++.+...... . ......|.+.| ++|++
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-~~Lls 448 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-SGLLS 448 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-chhhc
Confidence 99999999999765432111 1 34556787777 34443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-18 Score=219.34 Aligned_cols=231 Identities=20% Similarity=0.278 Sum_probs=197.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee-cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET-ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t-L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+.|..|. +.++++|+.|++|++||..++..+.+ +.||.+.|+++++..-+.+|++||.|.|++|||..++
T Consensus 211 ~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg------- 281 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG------- 281 (537)
T ss_pred hhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-------
Confidence 4445555 66889999999999999999998888 9999999999999877899999999999999998886
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
.+.+++.||.+.|.|+... ...+++|+.|.+|++|++.++.+++.
T Consensus 282 ---------------------------------~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 282 ---------------------------------ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred ---------------------------------cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEE
Confidence 3456789999999998864 56788899999999999999999999
Q ss_pred EecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2158 LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2158 L~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
+.+|....-++.-++.+++.+..++.|.+|++..........+|..+|+++.+... .++++|+.
T Consensus 327 ~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~--------------- 390 (537)
T KOG0274|consen 327 LRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL--------------- 390 (537)
T ss_pred eccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee---------------
Confidence 99887555556666999999999999999999855555555669999999988765 88888863
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL-KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|++|++||+.++ +++.++. +|..-+.++.+ .+++|++++.||+|++||..
T Consensus 391 --------------------------D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 391 --------------------------DTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred --------------------------ccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEeccccccEEEeecc
Confidence 677999999999 9999999 89888866554 57789999999999999965
Q ss_pred CC
Q 000085 2317 AL 2318 (2342)
Q Consensus 2317 sL 2318 (2342)
..
T Consensus 442 ~~ 443 (537)
T KOG0274|consen 442 EG 443 (537)
T ss_pred cC
Confidence 55
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-19 Score=212.69 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=191.7
Q ss_pred ccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcccc
Q 000085 2029 KTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR 2107 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~ 2107 (2342)
+.+.++.||+..|+++.|.| .+.+|+||+.|+.|+||++...
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------------------------- 247 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------------------------- 247 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-------------------------------------
Confidence 45678899999999999999 8999999999999999999762
Q ss_pred ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCC-cEEEEEeCCCeEE
Q 000085 2108 RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEG-VIMTWNKLQHTLS 2185 (2342)
Q Consensus 2108 ~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG-~IlVwdssdGsI~ 2185 (2342)
.++++++.||..+|..++|+.+|..++|+|-|++|++||++||+++.++... ..+++.+.||+ ++++.+..++.|.
T Consensus 248 --~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~ 325 (503)
T KOG0282|consen 248 --RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIR 325 (503)
T ss_pred --cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEE
Confidence 2456788999999999999999999999999999999999999999999764 47899999999 8999999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc------------ccccccccc
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT------------EDFDLASDQ 2253 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~------------iaFspd~~~ 2253 (2342)
.|++....+....-.|-+.|..+.|-++|+++++.+.+.+ .++|....+.... +..+|....
T Consensus 326 ~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks------~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 326 QWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS------VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred EEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc------EEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 9999865555444458999999999999999999998776 4566655543221 122222221
Q ss_pred ccCCCCccCCCCeEEEEECCCCe---EEEEEecCCC--CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2254 SVDNNRFDFPSPSICFLDLHTLK---VFHVLKLGEG--QDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2254 s~ss~~ias~DGsIrIWDL~Tgk---~L~tL~lgHs--~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
......|+.|.++.+...- .-..+. +|. +--..+.|||||++|++|+.||.+.+||-.+.
T Consensus 400 ----~~aQs~dN~i~ifs~~~~~r~nkkK~fe-Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 400 ----FAAQSMDNYIAIFSTVPPFRLNKKKRFE-GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred ----ehhhccCceEEEEecccccccCHhhhhc-ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 1122358899998865321 122344 664 34567899999999999999999999995543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.7e-18 Score=198.03 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=198.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|.+++++.-++.++||+..+ +...|.+. .....+..+.|+|.+.+|++|+.||++.+|.+.++...+.+
T Consensus 116 hdgtlLATGdmsG~v~v~~~st--g~~~~~~~-------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 116 HDGTLLATGDMSGKVLVFKVST--GGEQWKLD-------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM 186 (399)
T ss_pred cCceEEEecCCCccEEEEEccc--CceEEEee-------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe
Confidence 5788999999999999999877 33344432 12334456999999999999999999999999998888999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcccc---ccCC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR---RIEG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~---~i~~ 2111 (2342)
.||..+++|=.|.|||+.+++|..||+|++|+..++...+...........++.++.++..+..+..+..... ..++
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence 9999999999999999999999999999999999998777664333445556666666666665555433221 1111
Q ss_pred ceE--------EecCCCCCeEEEEE---ecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEe
Q 000085 2112 PIH--------VLRGHHREILCCCV---SSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2112 ~l~--------~L~GHs~~Vt~Vaf---SPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwds 2179 (2342)
.+. ....|...+.||.+ +..-.+.++|+.||+|.|||+.+..+.+.+... .+..+.|-+ ..+++...
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC 345 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec
Confidence 222 22345555555555 456778899999999999999887766666543 356666766 56667777
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.+|.++.|+.....+.....+|...|.+++++|++++++++|.|+.
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 7888888888755666666779999999999999999999987665
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=205.10 Aligned_cols=227 Identities=20% Similarity=0.321 Sum_probs=190.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+.|++-+|+|.+|+.|+-.|.|++|.+.+|.++..+.+|-..|||+.|+-||.+|+|||.||.|.+|.+..-.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv------- 156 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV------- 156 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec-------
Confidence 6679999999999999999999999999999999999999999999999999999999999999999987621
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
+++. +. ...+++.+..|+-+|+.+.+.+. ..+++|+|.|.++++||+..|.++.
T Consensus 157 -----------~a~~--------~~-----~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 157 -----------SADN--------DH-----SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred -----------cccc--------CC-----CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 1000 00 24678899999999999998764 4689999999999999999999988
Q ss_pred EEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCce---e-------------eeecCCCCC--CeEEEEEccCCCEE
Q 000085 2157 RLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL---V-------------ARAKLPLSG--SIGCMEISLDGHSA 2217 (2342)
Q Consensus 2157 sL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~---L-------------~s~~~~Hs~--~ItsLafSPDGk~L 2217 (2342)
++... .+.+++++|-++.+..+..+|.|.+..+.+.. . .....+|.+ .|+|++++-||..|
T Consensus 213 ti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL 292 (476)
T KOG0646|consen 213 TITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLL 292 (476)
T ss_pred EEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEE
Confidence 87654 57899999999999999999998877664221 0 112234777 99999999999999
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
++|+. ||.|+|||+.+.+++.++. ...++|+.+.+.|=
T Consensus 293 lSGd~-----------------------------------------dg~VcvWdi~S~Q~iRtl~-~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 293 LSGDE-----------------------------------------DGKVCVWDIYSKQCIRTLQ-TSKGPVTNLQINPL 330 (476)
T ss_pred EeeCC-----------------------------------------CCCEEEEecchHHHHHHHh-hhccccceeEeecc
Confidence 99962 7889999999999998887 45688999998664
Q ss_pred C
Q 000085 2298 N 2298 (2342)
Q Consensus 2298 G 2298 (2342)
.
T Consensus 331 ~ 331 (476)
T KOG0646|consen 331 E 331 (476)
T ss_pred c
Confidence 3
|
|
| >cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=181.58 Aligned_cols=104 Identities=34% Similarity=0.589 Sum_probs=86.7
Q ss_pred ceEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCC---CccccccccceEeeccceeEEeeccccCcccEEEE
Q 000085 1473 ERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEG---TSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALEL 1549 (2342)
Q Consensus 1473 EkVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~---~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEi 1549 (2342)
|+++++++|+||+|+.++||+|.||+.+|||++|++.+..+. ....+.+.++++|++++|++||+|||+||++||||
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi 80 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL 80 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence 589999999999999999999999999999999875544322 22334566889999999999999999999999999
Q ss_pred EEeCCceEEEEcCChhhHHHHHHHHHhcCCC
Q 000085 1550 FMVDRSNFFFDFGSTEGRRNAYRAIVQARPP 1580 (2342)
Q Consensus 1550 f~~~~~s~f~~F~~~~~~~~~~~~i~~~~~~ 1580 (2342)
|+.|+++|||+|.+++. ++++++..|+
T Consensus 81 F~~d~~~~f~~F~~~~~----~k~vv~~lp~ 107 (108)
T cd01201 81 FLASRTSIFFAFPDQNA----VKKVVYALPR 107 (108)
T ss_pred EEeCCceEEEEeCcHHH----HHHHHhhcCC
Confidence 99999999999986544 4555555554
|
Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-17 Score=195.12 Aligned_cols=269 Identities=13% Similarity=0.136 Sum_probs=217.1
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccC
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGH 2037 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GH 2037 (2342)
..+.+++.|+++-+|+.+.. +.+..-.++...++.+.++++...+++++.|..|+||.............|
T Consensus 232 ~~ilTGG~d~~av~~d~~s~---------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h 302 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN---------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPH 302 (506)
T ss_pred CcceecCCCCceEEEecchh---------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccc
Confidence 45667888988889987652 222333445556677999999999999999999999999888888888999
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
..+|+.+..+|.|.||+++|.|++..+.|+.++.+... ..-.
T Consensus 303 ~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~--------------------------------------vs~~ 344 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV--------------------------------------VSDE 344 (506)
T ss_pred cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE--------------------------------------Eeec
Confidence 99999999999999999999999999999988643211 0111
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCC-cee
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLV 2194 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L 2194 (2342)
+..-.+++.+|+|||-++.+|..||.|+|||+.++..+..|.+|. +..++|+.+|.+++....++.|.+|++.. +.+
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 223468999999999999999999999999999999999999986 78999999999999999999999999963 233
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC-
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH- 2273 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~- 2273 (2342)
..........+.++.|...|.+|++++. |=.|++++-.
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~-----------------------------------------~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIAGS-----------------------------------------DLQVYICKKKT 463 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEeecc-----------------------------------------eeEEEEEeccc
Confidence 3333334457999999999999998852 2234444422
Q ss_pred -CCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2274 -TLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2274 -Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+..++..+. .|.+..+++.|....++++++|.|..++++..
T Consensus 464 k~W~~~~~~~-~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 464 KSWTEIKELA-DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceeeehhh-hcccccceeeecccceEEeeccchhheEEeec
Confidence 455666666 78888999999999999999999999999863
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-18 Score=201.90 Aligned_cols=241 Identities=20% Similarity=0.240 Sum_probs=201.1
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc----ee-------------c-ccCCCCeEEEEecCCCCEEEEE
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL----ET-------------A-SGHCAPVTCLALSSDSNFLVTG 2056 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll----~t-------------L-~GHt~~VtcLAfSPDG~~LaSG 2056 (2342)
+..++.|++++||++++++++.|++|.-|++.+|+.. .+ - .+|...|.|++.|+||+||+||
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 4456788999999999999999999999999887632 11 1 3788999999999999999999
Q ss_pred eCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2057 SQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2057 S~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
+.|..|.||+..+. .+++.+.+|.+.|.+++|-.....++
T Consensus 221 g~d~~v~Iw~~~t~----------------------------------------ehv~~~~ghr~~V~~L~fr~gt~~ly 260 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTL----------------------------------------EHVKVFKGHRGAVSSLAFRKGTSELY 260 (479)
T ss_pred CCCceEEEecCccc----------------------------------------chhhcccccccceeeeeeecCcccee
Confidence 99999999999885 34456799999999999998888999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCCc--EEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGVDA--HAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh~v--ssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG 2214 (2342)
+++.|++|++|++.....+.++.+|+. ..+....-++.+-.+.+|.++++|.+... ....+.+|.+.+.|++|-.+
T Consensus 261 s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~- 338 (479)
T KOG0299|consen 261 SASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIND- 338 (479)
T ss_pred eeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecc-
Confidence 999999999999999999999999874 44555556677777789999999999532 22334458889999999755
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC---C----
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG---Q---- 2287 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs---~---- 2287 (2342)
.++++|+. +|.|.+|++.+.+++++....|+ .
T Consensus 339 ~HfvsGSd-----------------------------------------nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 339 EHFVSGSD-----------------------------------------NGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred cceeeccC-----------------------------------------CceEEEeeecccCceeEeeccccccCCcccc
Confidence 45666752 67899999999999998877664 2
Q ss_pred ----CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2288 ----DITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2288 ----~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|++++..|....+++|+.+|.|++|.+...
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 7899999999999999999999999996544
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=196.48 Aligned_cols=247 Identities=22% Similarity=0.303 Sum_probs=189.8
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC---CEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS---NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG---~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
++.|.+|++||.++|||. .|+...++.||.++|..++|.-.. ..|+++|.|.++++|.++.+....
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~---------- 183 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV---------- 183 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh----------
Confidence 679999999999999997 478889999999999988885433 469999999999999998764321
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-------------
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR------------- 2151 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT------------- 2151 (2342)
..++...||...|-+|...++|..++|||.|.+|.||+..+
T Consensus 184 --------------------------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 184 --------------------------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred --------------------------hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 11223359999999999999999999999999999999321
Q ss_pred ------------CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCE
Q 000085 2152 ------------GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2152 ------------GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
+..+-++.+|. +..+.|++ .........|.+|+.|++. |+...... ....++|+.++|...+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKL 314 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccce
Confidence 12445566765 67788888 4445556778999999986 43333322 5678999999999999
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--e-EEEEEecCCCCCeEEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--K-VFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--k-~L~tL~lgHs~~ItsLa 2293 (2342)
|++|+. |..|++||.+++ . +.+++. +|...|.++.
T Consensus 315 l~~gss-----------------------------------------dr~irl~DPR~~~gs~v~~s~~-gH~nwVssvk 352 (423)
T KOG0313|consen 315 LASGSS-----------------------------------------DRHIRLWDPRTGDGSVVSQSLI-GHKNWVSSVK 352 (423)
T ss_pred eeecCC-----------------------------------------CCceeecCCCCCCCceeEEeee-cchhhhhhee
Confidence 998862 667999998764 3 344555 9999999999
Q ss_pred EecCC-CEEEEEeCCCcEEEEeCCCCC------hhhhhhhhhccccCCCc
Q 000085 2294 LNKDN-TNLLVSTADKQLIVFTDPALS------LKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2294 fSPDG-~~LaSGSsDGsIrVWDi~sLs------~k~LdQLLk~GWegDGL 2336 (2342)
|+|.. .+|++|+.||++++||..... .+.-+.++...|...++
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~ 402 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGL 402 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCce
Confidence 99976 467799999999999976554 12235566666665543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-16 Score=184.69 Aligned_cols=282 Identities=16% Similarity=0.202 Sum_probs=198.3
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceeccc
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
..+++++.|+.+++|+..++... ..+..+ .. +..++|+|+|+.+ ++++.++.|++||..+++.+..+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~------~~~~~~-~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT------RTFPVG-QR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE------EEEECC-CC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC
Confidence 35667788899999997653211 112211 11 3458999999965 6777899999999999988777766
Q ss_pred CCCCeEEEEecCCCCEEEE-EeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2037 HCAPVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
|.. +..++|+|+++.+++ ++.|+++++||+.+.... ..
T Consensus 72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~----------------------------------------~~ 110 (300)
T TIGR03866 72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL----------------------------------------AE 110 (300)
T ss_pred CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE----------------------------------------eE
Confidence 554 567899999997755 456899999999774211 11
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeEEEEEe-cCCcEEEEEecCCcEEEEEe-CCCeEEEEEeCCc
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSS-DLLLHSIRRGRLIRRLV-GVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLNGV 2192 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DG-tIrIWDLrTGklIrsL~-gh~vssLSfSpDG~IlVwds-sdGsI~I~dlnG~ 2192 (2342)
+. +...+.+++|+|++.++++++.++ .+.+||..+++.+..+. ......++++++|..++... .++.+.+|++...
T Consensus 111 ~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 111 IP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred ee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 11 123357799999999999888775 56778999888776543 34467789999999776554 5789999999753
Q ss_pred ee-eeecCC----CC--CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2193 LV-ARAKLP----LS--GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2193 ~L-~s~~~~----Hs--~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
.. ...... +. .....++|+|+|++++++.. .++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~----------------------------------------~~~ 229 (300)
T TIGR03866 190 KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG----------------------------------------PAN 229 (300)
T ss_pred eeeeeeeecccccccccCCccceEECCCCCEEEEEcC----------------------------------------CCC
Confidence 32 222111 11 12356889999998765521 145
Q ss_pred eEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCChhhhhhhhhccccCCCc
Q 000085 2266 SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVFTDPALSLKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~sLs~k~LdQLLk~GWegDGL 2336 (2342)
.|.+||+.+++.+..+. +...+.+++|+|+|.+|+++ +.+|.|++||..+.. +...++.+-.+.|+
T Consensus 230 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~ 296 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK---VIKSIKVGRLPWGV 296 (300)
T ss_pred eEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc---EEEEEEccccccee
Confidence 69999999998876665 44579999999999999886 569999999977653 22233455555554
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-18 Score=201.28 Aligned_cols=273 Identities=11% Similarity=0.105 Sum_probs=215.6
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc---ccceeccc--CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA---KTLETASG--HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg---kll~tL~G--Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
-|+++.+|...+.+.+|+ .|.|+|||+... ..+..+.. ...-|.++.+.|||+.|++|+.-.++.|||+.....
T Consensus 421 vVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp 499 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP 499 (705)
T ss_pred EEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc
Confidence 366788999999999987 688999998642 23333332 346789999999999999999999999999987543
Q ss_pred cccc-ccCCCCCCccccccCCCCCceeecCCC-ccccccC--CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000085 2073 SRTG-TIEPSSGMGTPGNSIGSSTPANASADK-SRRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2073 i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWD 2148 (2342)
..+. .......+++++.+||.+...++..|+ +.+|++. ..+..|+||++.+.|+.+++||..|.||+-|.+|+.||
T Consensus 500 rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 500 RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence 2222 233345678899999999887776665 4668874 45788999999999999999999999999999999999
Q ss_pred CCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2149 IRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2149 LrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+++++.+....- ..+..+..+|.|.+++.++.++.+.+....+.... ...-|..-|.++.|.+.|+++++.+.|
T Consensus 580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky-qlhlheScVLSlKFa~cGkwfvStGkD---- 654 (705)
T KOG0639|consen 580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY-QLHLHESCVLSLKFAYCGKWFVSTGKD---- 654 (705)
T ss_pred hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-eecccccEEEEEEecccCceeeecCch----
Confidence 999977655432 34778889999999999999999888777653222 122289999999999999999987643
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
+-+..|...-|..++..+ ....|.++.+|.|.++|+||+.|
T Consensus 655 -------------------------------------nlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 655 -------------------------------------NLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred -------------------------------------hhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCC
Confidence 335556666666555554 56789999999999999999999
Q ss_pred CcEEEEeC
Q 000085 2308 KQLIVFTD 2315 (2342)
Q Consensus 2308 GsIrVWDi 2315 (2342)
..-.||.+
T Consensus 696 kkATVYeV 703 (705)
T KOG0639|consen 696 KKATVYEV 703 (705)
T ss_pred cceEEEEE
Confidence 99998873
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-18 Score=195.98 Aligned_cols=223 Identities=16% Similarity=0.188 Sum_probs=178.2
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
.+..|+.++.|.+|++||.+++|||.|..|+|.|+......... . .+..+..+ .-...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~--------~---------em~~~~~q-----a~hPv 164 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP--------K---------EMISGDTQ-----ARHPV 164 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch--------h---------hhccCCcc-----cCCce
Confidence 45679999999999999999999999999999999852111000 0 00000000 00134
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE---e-cCCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL---V-GVDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL---~-gh~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
+.+++.|.++|+++.|+|....+++|+.|++|+++|...-...+.+ . .+.+.+++|+|.|.+++.+..-..+++|+
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd 244 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD 244 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence 7789999999999999999999999999999999999754433322 2 25589999999999999999999999999
Q ss_pred eCCceeeeecC---CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2189 LNGVLVARAKL---PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2189 lnG~~L~s~~~---~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
++....-.... .|.+.|+++.+++.|+..++|+. ||
T Consensus 245 v~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------------------------------DG 283 (430)
T KOG0640|consen 245 VNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK-----------------------------------------DG 283 (430)
T ss_pred ccceeEeeecCcccccccceeEEEecCCccEEEEecc-----------------------------------------CC
Confidence 98543222222 29999999999999999999974 67
Q ss_pred eEEEEECCCCeEEEEEecCCCC-CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2266 SICFLDLHTLKVFHVLKLGEGQ-DITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lgHs~-~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|++||--+++|+.++...|++ .|++..|+.+|++|++.|.|..+++|.+.+.
T Consensus 284 ~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 7999999999999999878864 6999999999999999999999999996654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-17 Score=184.68 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=175.8
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
.++||..+++.+.++.+|.+|+||+.|.+..||--.+| ..
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG----------------------------------------er 44 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----------------------------------------ER 44 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC----------------------------------------ce
Confidence 36899999999999999999999999999999987664 23
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCC-----CeEEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQ-----HTLSS 2186 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssd-----GsI~I 2186 (2342)
+.++.||++.|+|++++.+.+.++||+.|.++++||+.+|+++.+++.. .+..+.|+.+|++++....+ +.|.+
T Consensus 45 lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 45 LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 5567999999999999999999999999999999999999999999864 47899999999998887543 57888
Q ss_pred EEeC-------CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2187 FTLN-------GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2187 ~dln-------G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
|++. +.........+...++.+.|.|-+++|++|..
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe------------------------------------- 167 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE------------------------------------- 167 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-------------------------------------
Confidence 9886 22211122237789999999999999999852
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
||.|.+||+.+++.+..-...|+..|+.+++++|..++++++.|.+-++||...+.
T Consensus 168 ----~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 168 ----DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred ----CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence 67899999999865544433899999999999999999999999999999987774
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=192.14 Aligned_cols=277 Identities=14% Similarity=0.144 Sum_probs=197.4
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCC-ccccccc-------ceecc-ccCcceeEEEEEcCCCCEEEEEEcCCcEEE
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGA-DEWHFPR-------ALAFA-SSGIRSSAVVSITHDKEIITGGHVDGSIKL 2022 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~-~ew~~p~-------sls~h-s~gI~Svt~VafSpDGklLASGS~DGsIrV 2022 (2342)
++.++++++.+++.+++|--|+..++... .-|.-+. .+..+ ..++.-+.++++|+||++||+|+.|..|.|
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I 228 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI 228 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE
Confidence 44456677777888888888876664432 1111110 01112 256667788999999999999999999999
Q ss_pred EecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC
Q 000085 2023 LTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2023 WDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
|+.++.+.++.+.+|.+.|.+++|-..-..|+++|.|++|++|+++...
T Consensus 229 w~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s------------------------------- 277 (479)
T KOG0299|consen 229 WDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS------------------------------- 277 (479)
T ss_pred ecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-------------------------------
Confidence 9999999999999999999999999888899999999999999998742
Q ss_pred CccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeC
Q 000085 2103 KSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2103 ~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdss 2180 (2342)
.+.++.||++.|..+....-.+.+-.|+.|+++++|++... ..-.+.+++ +.+++|=.+.+ ++.++.
T Consensus 278 ---------~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H-fvsGSd 346 (479)
T KOG0299|consen 278 ---------YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH-FVSGSD 346 (479)
T ss_pred ---------HHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc-eeeccC
Confidence 23457899999999998877777777779999999999432 223344443 44454443333 334455
Q ss_pred CCeEEEEEeCC-ceeeeecCC-----------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2181 QHTLSSFTLNG-VLVARAKLP-----------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2181 dGsI~I~dlnG-~~L~s~~~~-----------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
+|.|.+|++-. +++...... +..+|++++..|...++++|+.
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~-------------------------- 400 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW-------------------------- 400 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC--------------------------
Confidence 55555555431 222221111 3348999999999999998873
Q ss_pred cccccccCCCCccCCCCeEEEEECCCC----eEEEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEE
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTL----KVFHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVF 2313 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tg----k~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVW 2313 (2342)
+|.|++|-+..+ +++..+. -.+-|++++|+++|++|++| +....+-=|
T Consensus 401 ---------------~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 401 ---------------SGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ---------------CCceEEEEecCCccccceeeecc--cccEEEEEEEccCCCEEEEeccccccccee
Confidence 567888887765 4555555 56789999999999977776 444444444
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=207.35 Aligned_cols=243 Identities=19% Similarity=0.258 Sum_probs=175.3
Q ss_pred cceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC---------CCCCCccccccC---CCCCc
Q 000085 2030 TLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE---------PSSGMGTPGNSI---GSSTP 2096 (2342)
Q Consensus 2030 ll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~---------~~~~V~svs~Sp---DG~~L 2096 (2342)
..+.+. .|.+.|+|+.||+||+||||||.||.|+||.+............ ....+..+..+. .++..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344556 89999999999999999999999999999999763211000000 000000000000 00000
Q ss_pred --------eeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEE
Q 000085 2097 --------ANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVS 2167 (2342)
Q Consensus 2097 --------as~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLS 2167 (2342)
..............+|++.+.||.+.|..+.||. .++|+|+|.|.||++|++....|++.|.+.. +++++
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 0000000011122578899999999999999996 4579999999999999999999999998766 89999
Q ss_pred Eec-CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2168 LSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2168 fSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|.| |.++++.+.-|+.+++|++....+....- ...-|++++|+|||++.++|+.
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~------------------------ 471 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF------------------------ 471 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe------------------------
Confidence 999 67899999999999999998765543222 3478999999999999999974
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCC-------CCCeEEEEEecCC-CEEEEEeCCCcEEEEeC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGE-------GQDITALALNKDN-TNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgH-------s~~ItsLafSPDG-~~LaSGSsDGsIrVWDi 2315 (2342)
+|.+++|+....+........+ ...|+++.|.|.. ..|++.+.|..|+|+|.
T Consensus 472 -----------------~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 472 -----------------NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred -----------------ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 4667888887776655543211 2279999999744 45889999999999995
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=197.01 Aligned_cols=238 Identities=16% Similarity=0.164 Sum_probs=196.2
Q ss_pred ceeEEEEEcCCCC--EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1997 RSSAVVSITHDKE--IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1997 ~Svt~VafSpDGk--lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+++.++|+|... +.+++ .-.+.||+..+....+++....+.|.++.|..||++|+.|...|.|+|+|..+.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~--S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---- 100 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS--SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---- 100 (487)
T ss_pred CcceeEecCCCCCCceEEec--ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH----
Confidence 4567799999765 44444 467999999888888888888999999999999999999999999999996552
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCe
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..+..+++|+.+|..+.|+|+ +..+++|+.|+.+++||+.+..
T Consensus 101 ------------------------------------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 101 ------------------------------------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred ------------------------------------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 123456899999999999986 5567899999999999999998
Q ss_pred EEEEEecCC--cEEEEEecC-CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2154 LIRRLVGVD--AHAVSLSSE-GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2154 lIrsL~gh~--vssLSfSpD-G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
....+.+|+ +++.+++|. +.+++.++.||.|++|+.....-....+.|..+|..+.+-|.|..+++++
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg--------- 215 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG--------- 215 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC---------
Confidence 766888887 677888775 56899999999999999875433333455999999999999999999875
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQL 2310 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsI 2310 (2342)
-+.|+|||+.+|..+-.....|...|+|+++..+++.|++|+-||.+
T Consensus 216 ---------------------------------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 216 ---------------------------------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred ---------------------------------CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccce
Confidence 24699999996544443332599999999999999999999999999
Q ss_pred EEEeCCCC
Q 000085 2311 IVFTDPAL 2318 (2342)
Q Consensus 2311 rVWDi~sL 2318 (2342)
+||+..+.
T Consensus 263 KVfd~t~~ 270 (487)
T KOG0310|consen 263 KVFDTTNY 270 (487)
T ss_pred EEEEccce
Confidence 99996554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=188.38 Aligned_cols=280 Identities=14% Similarity=0.126 Sum_probs=198.3
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc-cc--ccCCCCCCccccccCCCCCceeecCCCccc--
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR-TG--TIEPSSGMGTPGNSIGSSTPANASADKSRR-- 2106 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~-t~--~~~~~~~V~svs~SpDG~~Las~s~D~s~~-- 2106 (2342)
.+++||.+.|+|++|+.||++|+|++.|++|+||+++...... .. ....-...+.+.|+||.+.+++....+...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4689999999999999999999999999999999998743211 11 111223456778899888776555443322
Q ss_pred ccc-----C---------CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEec
Q 000085 2107 RRI-----E---------GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSS 2170 (2342)
Q Consensus 2107 ~~i-----~---------~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSp 2170 (2342)
+.. + .....-..|.-.|..+-+..++.+|+|++.|.+|.+||++ |+.+.++.... .+..++||
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 111 0 0111223466677777777788999999999999999998 99999987654 67889999
Q ss_pred CCcEEEEEeCCCeEEEEEeC----Ccee--e--eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC
Q 000085 2171 EGVIMTWNKLQHTLSSFTLN----GVLV--A--RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS 2242 (2342)
Q Consensus 2171 DG~IlVwdssdGsI~I~dln----G~~L--~--s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~ 2242 (2342)
+|++++...-+-.+.+|.+- |... . -...+|...|..++|+++.+.+++.+.||....|..+-.+.......
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 99999988888888888862 3211 1 11234999999999999999999999999955444432222221110
Q ss_pred ----C------------ccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2243 ----G------------TEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2243 ----~------------~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
+ .+..+|+..... ......+.++..++++....+...|+..|.+++|+++|++++++|
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-----~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG- 392 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLA-----VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG- 392 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEE-----eecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-
Confidence 0 011222222111 113457999999999988888878999999999999999999887
Q ss_pred CCcEEEEe-CCCC
Q 000085 2307 DKQLIVFT-DPAL 2318 (2342)
Q Consensus 2307 DGsIrVWD-i~sL 2318 (2342)
|..++|+. .++.
T Consensus 393 dr~vrv~~ntpg~ 405 (420)
T KOG2096|consen 393 DRYVRVIRNTPGW 405 (420)
T ss_pred ceeeeeecCCCch
Confidence 67788887 4444
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=202.24 Aligned_cols=265 Identities=17% Similarity=0.188 Sum_probs=210.0
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
-++|..|.++++|+.||+|+.... -..|..+..+ .....++..++..|++|+.+++|.+|...+++.-..
T Consensus 22 d~~gefi~tcgsdg~ir~~~~~sd-----~e~P~ti~~~-----g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 22 DPDGEFICTCGSDGDIRKWKTNSD-----EEEPETIDIS-----GELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred cCCCCEEEEecCCCceEEeecCCc-----ccCCchhhcc-----CceeEEEeecccceEEeeccceEEEeeCCCCCccce
Confidence 356788899999999999985441 1234444322 223355666777999999999999999999887777
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
+...+-++++++|+.+|++++.||.|-.|++-+..+. ...
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----------------------------------------s~~ 131 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----------------------------------------SQE 131 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEecccc----------------------------------------chh
Confidence 7777889999999999999999999999999998874 234
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC----------cEEEEEecCCcEEEEEeCCCe
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----------AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~----------vssLSfSpDG~IlVwdssdGs 2183 (2342)
..+.+|.++|.++.|+|++.+||+.+-||.|+|||+.++.+..++.+-. ...++|+|+|..++.-..++.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 5689999999999999999999999999999999999999888776521 356899999777777778899
Q ss_pred EEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2184 LSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
|.+|+..+......... +...+.++.|+|+|+||++++.
T Consensus 212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~--------------------------------------- 252 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL--------------------------------------- 252 (933)
T ss_pred EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc---------------------------------------
Confidence 99999987655443333 4445999999999999998862
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
||.|.|||+.+.+. + .....|++++|.|++.-|-.-...|...+|-
T Consensus 253 --~g~I~vWnv~t~~~-~----~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 253 --DGQILVWNVDTHER-H----EFKRAVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred --CCcEEEEecccchh-c----cccceeEEEecCCCCCeeEEEeeccccccCh
Confidence 67899999998432 1 2346899999999987666555556555554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-17 Score=184.97 Aligned_cols=233 Identities=15% Similarity=0.181 Sum_probs=182.2
Q ss_pred EEEEEcCCCC-EEEEEEcCCcEEEEecCC-cccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2000 AVVSITHDKE-IITGGHVDGSIKLLTSDG-AKTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2000 t~VafSpDGk-lLASGS~DGsIrVWDl~t-gkll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
.-++|++... .+++++.||++++||+.. ..+++.++.|...|.++.|++ ++..++++|.|+||++|+....
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~------ 137 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP------ 137 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC------
Confidence 3488888765 777788899999999643 457889999999999999998 4567888899999999998764
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLI 2155 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklI 2155 (2342)
..+.++.||...|...+|+|. .++++++|.||++++||++.....
T Consensus 138 ----------------------------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 138 ----------------------------------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF 183 (311)
T ss_pred ----------------------------------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce
Confidence 235668999999999999985 789999999999999999864433
Q ss_pred EEEecCC--cEEEEEec-CCcEEEEEeCCCeEEEEEeCCc--eeeeecCCCCCCeEEEEEccCCCEE-EEEeCCCCCCCC
Q 000085 2156 RRLVGVD--AHAVSLSS-EGVIMTWNKLQHTLSSFTLNGV--LVARAKLPLSGSIGCMEISLDGHSA-LIGVNSSSTNNG 2229 (2342)
Q Consensus 2156 rsL~gh~--vssLSfSp-DG~IlVwdssdGsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPDGk~L-aSGS~DGs~d~~ 2229 (2342)
..+..|. +.++.|+. +..+++.+..++.|+.|++..- ++.. ..+|.-.|..+.|||...-+ ++++
T Consensus 184 ~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e-L~gh~~AVRkvk~Sph~~~lLaSas-------- 254 (311)
T KOG0277|consen 184 MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE-LNGHGLAVRKVKFSPHHASLLASAS-------- 254 (311)
T ss_pred eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee-ecCCceEEEEEecCcchhhHhhhcc--------
Confidence 3477775 44444554 4567778888999999998642 2222 24599999999999975444 3332
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe-EEEEEecCCCCCeEEEEEec-CCCEEEEEeCC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VFHVLKLGEGQDITALALNK-DNTNLLVSTAD 2307 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSP-DG~~LaSGSsD 2307 (2342)
.|-+++|||..... ++.+.. .|+.-|..+.||+ +..++++++.|
T Consensus 255 ---------------------------------YDmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 255 ---------------------------------YDMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred ---------------------------------ccceEEecccccchhhhhhhh-ccceEEeccccccccCceeeecccc
Confidence 26779999987543 444555 7888999999998 66789999999
Q ss_pred CcEEEEeC
Q 000085 2308 KQLIVFTD 2315 (2342)
Q Consensus 2308 GsIrVWDi 2315 (2342)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999983
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=190.99 Aligned_cols=278 Identities=13% Similarity=0.179 Sum_probs=212.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.++++.|+|...++.+++.|++++||.++.. ..++.+.--..+|.+++|.|+|. .+++++.-.....||+.+.+...
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 3456999999999999999999999998753 45666666678999999999999 89999999999999998865433
Q ss_pred cc--ccCCCCCCccccccCCCCCceeecCCCccc-c--ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2075 TG--TIEPSSGMGTPGNSIGSSTPANASADKSRR-R--RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2075 t~--~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~--~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
.. .......+.....++++++++..+..+... . .+...+..++ -.+.|..++|+.+++.|+.++.+|.|.+||+
T Consensus 295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNL 373 (514)
T ss_pred ccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEec
Confidence 22 111233566677889999887776655322 1 1122233332 3578999999999999999999999999999
Q ss_pred CCCeEEEEEecCC---cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecC------CCCCCeEEEEEccCCCEEEEE
Q 000085 2150 RRGRLIRRLVGVD---AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKL------PLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2150 rTGklIrsL~gh~---vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~------~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
++..+++++...+ .+.+|.|.+|.+++.++..|.|.+|+.+......... .-...|+++.|++|++.|+.+
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 9999999987654 5788999999999999999999999965322211111 145689999999999999988
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC--CCCCeEEEEEecCC
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG--EGQDITALALNKDN 2298 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg--Hs~~ItsLafSPDG 2298 (2342)
|.- .+..+++-.+.+......++.. .-+.|+|++|||.+
T Consensus 454 S~~---------------------------------------~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 454 SRV---------------------------------------KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred hhc---------------------------------------cccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence 621 1345666666665555555421 12468999999999
Q ss_pred CEEEEEeCCCcEEEEeC
Q 000085 2299 TNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2299 ~~LaSGSsDGsIrVWDi 2315 (2342)
.+|+.|..+|.+.+|.+
T Consensus 495 G~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 495 GYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceEEeecCCCceeeEee
Confidence 99999999999999984
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=183.72 Aligned_cols=259 Identities=15% Similarity=0.183 Sum_probs=194.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
++.+.|+|.+..|++++|||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~------- 86 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN------- 86 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc-------
Confidence 455999999999999999999999999887555554 4999999999985 5789999999999999999852
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
...+..|...|.|+..++....+++||.|++|++||.+......++
T Consensus 87 ----------------------------------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~ 132 (323)
T KOG1036|consen 87 ----------------------------------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF 132 (323)
T ss_pred ----------------------------------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc
Confidence 2235679999999999998899999999999999999985555555
Q ss_pred ecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc--
Q 000085 2159 VGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI-- 2234 (2342)
Q Consensus 2159 ~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L-- 2234 (2342)
.... ...+.+-.|..++.++.+..+.+|++.... .........-.+.|+++-|++.-.++++.+|.......+.-
T Consensus 133 d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~ 211 (323)
T KOG1036|consen 133 DQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE 211 (323)
T ss_pred ccCc-eEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchH
Confidence 4333 566778889999999999999999986422 21111225678999999999888888887765322211100
Q ss_pred -----cccCCC-----------CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC
Q 000085 2235 -----QGLNSK-----------QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN 2298 (2342)
Q Consensus 2235 -----w~l~~~-----------~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG 2298 (2342)
+.++-+ ..+.+.|+|-......+ ..||.|.+||+.+.+.+..+. .....|.+++|+.||
T Consensus 212 ~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg----GsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~dG 286 (323)
T KOG1036|consen 212 AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG----GSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMDG 286 (323)
T ss_pred HhhhceeEEeeecccCCceEEEEeceeEeccccceEEec----CCCceEEEccCcchhhhhhcc-CCCCceEEEEeccCC
Confidence 000000 12334555543333333 359999999999999888887 556679999999999
Q ss_pred CEEEEEeC
Q 000085 2299 TNLLVSTA 2306 (2342)
Q Consensus 2299 ~~LaSGSs 2306 (2342)
..||+++.
T Consensus 287 ~~LAia~s 294 (323)
T KOG1036|consen 287 SLLAIASS 294 (323)
T ss_pred CeEEEEec
Confidence 99998863
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=184.64 Aligned_cols=308 Identities=15% Similarity=0.212 Sum_probs=221.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
|.+..++....-+.+.+|...++...... -.|....-.-|.|++|.++|.. ++|..+|.|.||+..+.+..+..
T Consensus 210 Ptd~nliit~Gk~H~~Fw~~~~~~l~k~~-----~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 210 PTDPNLIITCGKGHLYFWTLRGGSLVKRQ-----GIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred cCCCcEEEEeCCceEEEEEccCCceEEEe-----eccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEe
Confidence 34444444455568889976653322111 1111112256889999999985 56788999999999888887777
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-ccCCCCCCccccccCCCCCceeecCCC-cccccc-CC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI-EG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i-~~ 2111 (2342)
..|.+.|.|++.-.+|. |+||+.|+.|..||-.- ...+.. ..+..+.+..++-...+ +.++...+ +..-.+ ..
T Consensus 284 ~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENG 359 (626)
T ss_pred eecCCceEEEEEecCcc-EeecCccceEEeccccc-cccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCC
Confidence 79999999999998886 45599999999999332 222222 33334444444433222 33333222 222222 23
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-EecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs-L~gh~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
......+|.+..+.++.+|+..+++|++.|+.+++|+ ..++..+ +...+..++.|.|.| .++.+...|...+++..
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE 436 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence 4556789999999999999999999999999999999 4444443 334567899999999 88888899998888887
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
.+.+...... ..++++|.|+|+|.+++.|+. |+.|+||
T Consensus 437 ~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~-----------------------------------------d~~iyiy 474 (626)
T KOG2106|consen 437 TQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSH-----------------------------------------DNHIYIY 474 (626)
T ss_pred cceeEEEEec-CCceEEEEEcCCCCEEEEecC-----------------------------------------CCeEEEE
Confidence 6655555444 889999999999999999973 6678888
Q ss_pred ECCC-CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2271 DLHT-LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2271 DL~T-gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
-+.. +.....+...|.++|+.+.||+|+++|.+-+.|-.|..| .++.
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW-~~~~ 522 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW-KPSE 522 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE-cccc
Confidence 8754 444444443566899999999999999999999999999 4544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-18 Score=211.75 Aligned_cols=227 Identities=20% Similarity=0.275 Sum_probs=199.4
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
.|+.+-..++.+++|++|..+-+|.+.....+..+.+|..+|.|+.|+++..+|++|+.||+|++||+..+.
T Consensus 32 ~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-------- 103 (825)
T KOG0267|consen 32 GCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-------- 103 (825)
T ss_pred ceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh--------
Confidence 345556677899999999999999998777778899999999999999999999999999999999998753
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
.+++|.||...+..|.|+|-+.+.++|+.|+.+++||++...|.+.+.
T Consensus 104 --------------------------------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 104 --------------------------------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred --------------------------------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence 344678999999999999999999999999999999999888999998
Q ss_pred cCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2160 GVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2160 gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
+|. +.++.|+|+|++++-+..+..+++|+.....+...+..|.+.|.++.|+|..-.+++|+
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs---------------- 215 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS---------------- 215 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC----------------
Confidence 875 78899999999999999999999999975555555566999999999999888887775
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
.|+++++||+++.+.+.... ....+|.++.|+|++..+++|..+.
T Consensus 216 -------------------------~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 216 -------------------------SDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -------------------------CCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecCchhh
Confidence 27889999999999888877 5678899999999999888886543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=186.93 Aligned_cols=270 Identities=15% Similarity=0.175 Sum_probs=222.6
Q ss_pred ceeecCCCeEEecCCCceEEEecCCCCCCCccccc--ccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc
Q 000085 1951 PFLFQHGKASASPASGTFLRMFKGPGGSGADEWHF--PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA 2028 (2342)
Q Consensus 1951 ~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~--p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg 2028 (2342)
...-|+|.++++++-|+.|.+|+-.+|....+..+ .+.+-++. ..|.|++||.|...+|+|+.||.|+||.+.+|
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd---~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD---DAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc---cceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 34457899999999999999999877655444433 23333333 34677999999999999999999999999999
Q ss_pred ccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc-c
Q 000085 2029 KTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR-R 2106 (2342)
Q Consensus 2029 kll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~-~ 2106 (2342)
.+++.+. .|+..|+|+.||.|+..+.++|.|.+++|.-+..|++...+ .+|...+....|++||..+.+++.|+.. .
T Consensus 296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEE
Confidence 9999997 89999999999999999999999999999999999877665 6788889999999999999999988764 4
Q ss_pred ccc--CCceEEec--CCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecC-----CcEEEEEecCCcEEE
Q 000085 2107 RRI--EGPIHVLR--GHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-----DAHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2107 ~~i--~~~l~~L~--GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh-----~vssLSfSpDG~IlV 2176 (2342)
|.. ..++.+++ +.+.+|+.+-.-|. ...++.|...++|+|.++ .|+.++++... .-...+.||.|.++.
T Consensus 375 W~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiY 453 (508)
T KOG0275|consen 375 WHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIY 453 (508)
T ss_pred ecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence 654 34555554 34567888877764 567889999999999998 78899988642 235667899999999
Q ss_pred EEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2177 WNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2177 wdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
+-..++.++.|......+.....-|...|..++-+|..+.+++-+.||.
T Consensus 454 cigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred EEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccch
Confidence 9999999999998765666665569999999999999999998887776
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=197.26 Aligned_cols=308 Identities=14% Similarity=0.106 Sum_probs=227.1
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecc-c
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETAS-G 2036 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~-G 2036 (2342)
.++-|..+++|-+|+...+.....+..+ -..++.++|.-||+ ++|+|+..|.+.+||++..+.+..+. .
T Consensus 216 VVaiG~~~G~ViifNlK~dkil~sFk~d---------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na 286 (910)
T KOG1539|consen 216 VVAIGLENGTVIIFNLKFDKILMSFKQD---------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA 286 (910)
T ss_pred EEEEeccCceEEEEEcccCcEEEEEEcc---------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc
Confidence 4555667778888886653333222211 12355699999998 88889889999999999888777665 7
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc---ccCCCCCCccc--------------------------
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---TIEPSSGMGTP-------------------------- 2087 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---~~~~~~~V~sv-------------------------- 2087 (2342)
|.+.|+...|.|....++|++.|+.+++|-.+++...... ..+|..+..++
T Consensus 287 h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 287 HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 9999999999999999999999999999976633211100 11111111111
Q ss_pred --------------------------------------------------------------------------------
Q 000085 2088 -------------------------------------------------------------------------------- 2087 (2342)
Q Consensus 2088 -------------------------------------------------------------------------------- 2087 (2342)
T Consensus 367 e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~ 446 (910)
T KOG1539|consen 367 ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK 446 (910)
T ss_pred HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc
Confidence
Q ss_pred --------cccCCCCCceeecCCCcc-ccccC--CceEEe---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2088 --------GNSIGSSTPANASADKSR-RRRIE--GPIHVL---RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2088 --------s~SpDG~~Las~s~D~s~-~~~i~--~~l~~L---~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
+.++-|++...+...+.. +++.. -....+ ..|..+|+.++...-++.++|++.||.+++||..+..
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 111112211111111111 11111 111223 3688999999998888899999999999999999998
Q ss_pred EEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2154 LIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2154 lIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
++.++.. +.+..+..+....+++....+-.|.++|.....+.+...+|.+.|++++|||||++|++++.
T Consensus 527 l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm---------- 596 (910)
T KOG1539|consen 527 LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM---------- 596 (910)
T ss_pred eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec----------
Confidence 8888864 56777777877778888888889999999888888888889999999999999999999873
Q ss_pred cccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC-CcEE
Q 000085 2233 NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD-KQLI 2311 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD-GsIr 2311 (2342)
|++|++||+.++.++-.+. -..+++++.|||+|.+|+|...| ..|+
T Consensus 597 -------------------------------D~tIr~wDlpt~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 597 -------------------------------DSTIRTWDLPTGTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred -------------------------------CCcEEEEeccCcceeeeEe--cCCcceeeEECCCCCEEEEEEecCceEE
Confidence 6779999999999998876 56789999999999999999988 7899
Q ss_pred EEeCCCC
Q 000085 2312 VFTDPAL 2318 (2342)
Q Consensus 2312 VWDi~sL 2318 (2342)
+|....+
T Consensus 644 lWsNksl 650 (910)
T KOG1539|consen 644 LWSNKSL 650 (910)
T ss_pred EEEchhH
Confidence 9985443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=193.49 Aligned_cols=267 Identities=15% Similarity=0.091 Sum_probs=196.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc---
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL--- 2031 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll--- 2031 (2342)
+.|.++++|+-|.+|++|+-..-... ...-+.+ .....+.++++.|++.|..|++.+....++|+|-+.....
T Consensus 177 p~GaR~~sGs~Dy~v~~wDf~gMdas--~~~fr~l--~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 177 PSGARFVSGSLDYTVKFWDFQGMDAS--MRSFRQL--QPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred CCCceeeeccccceEEEEeccccccc--chhhhcc--CcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee
Confidence 56888999999999999985541111 1111111 1222234556999999998877777888999997654332
Q ss_pred ---------eecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcccccc-----ccCCCCCCccccccCCCCCc
Q 000085 2032 ---------ETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTG-----TIEPSSGMGTPGNSIGSSTP 2096 (2342)
Q Consensus 2032 ---------~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~-----~~~~~~~V~svs~SpDG~~L 2096 (2342)
..-+||...++|.+|+|+. ..++|+|.||+++|||+...+..... ..+....+..++|++||..+
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence 2347899999999999974 67999999999999999875432221 33455678899999999999
Q ss_pred eeecCCCc-cccccC-----CceEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEEEec----CCc
Q 000085 2097 ANASADKS-RRRRIE-----GPIHVLRGHHR--EILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIRRLVG----VDA 2163 (2342)
Q Consensus 2097 as~s~D~s-~~~~i~-----~~l~~L~GHs~--~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIrsL~g----h~v 2163 (2342)
+.+..|+. ..|+.+ ...+.-..|.. .|+||.||+||++|+|-+.|+++++||++.. +++....+ ...
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~ 412 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPG 412 (641)
T ss_pred hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCC
Confidence 99988876 446643 23445567877 9999999999999999999999999999874 45554443 236
Q ss_pred EEEEEecCCcEEEEEeC------CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2164 HAVSLSSEGVIMTWNKL------QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwdss------dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
+.++|||+.++++.+.. .|.+.+|+...-.......-....|..+.|+|-=+.+++|+.+|.
T Consensus 413 tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 413 TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred CccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 78999999999998743 366777776543222222224678899999999888888887766
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=198.41 Aligned_cols=250 Identities=18% Similarity=0.229 Sum_probs=202.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
+.|+ ..+.|+.|. ...|++|+..+++.......+.+.|+++.|+++|.+|+.|..+|+|.|||......+
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-------- 252 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-------- 252 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--------
Confidence 6677 344666664 568999999999877666666899999999999999999999999999999875332
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-Ee
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR-LV 2159 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs-L~ 2159 (2342)
..+.+ |...|-|++|. +..+.+|+.||.|..+|++..+.... +.
T Consensus 253 --------------------------------~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~ 298 (484)
T KOG0305|consen 253 --------------------------------RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQ 298 (484)
T ss_pred --------------------------------ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhh
Confidence 23345 99999999997 77899999999999999998776554 66
Q ss_pred cCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCCCCCCCcccccc
Q 000085 2160 GVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSALIGVNSSSTNNGSYDNIQG 2236 (2342)
Q Consensus 2160 gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~DGs~d~~i~d~Lw~ 2236 (2342)
+|. +..+.|++|+..++.+..|+.+.+|+............|...|.+++|+| ....||+|+ |+
T Consensus 299 ~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG--Gs----------- 365 (484)
T KOG0305|consen 299 GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG--GS----------- 365 (484)
T ss_pred cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC--CC-----------
Confidence 664 78899999999999999999999999976555555666999999999999 456777774 22
Q ss_pred cCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE--eCCCcEEEEe
Q 000085 2237 LNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS--TADKQLIVFT 2314 (2342)
Q Consensus 2237 l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG--SsDGsIrVWD 2314 (2342)
.|++|++||..+++.+..+. .+..|++|.|++..+-|+++ -.++.|.||+
T Consensus 366 --------------------------~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~ 417 (484)
T KOG0305|consen 366 --------------------------ADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWK 417 (484)
T ss_pred --------------------------cccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence 48999999999999998887 56789999999999777765 5678999999
Q ss_pred CCCCCh-----hhhhhhhhccccCCCc
Q 000085 2315 DPALSL-----KVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2315 i~sLs~-----k~LdQLLk~GWegDGL 2336 (2342)
.+++.. .-....+...|.+||=
T Consensus 418 ~ps~~~~~~l~gH~~RVl~la~SPdg~ 444 (484)
T KOG0305|consen 418 YPSMKLVAELLGHTSRVLYLALSPDGE 444 (484)
T ss_pred ccccceeeeecCCcceeEEEEECCCCC
Confidence 887641 1123456677888864
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=181.58 Aligned_cols=265 Identities=17% Similarity=0.243 Sum_probs=207.3
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEec------CC-----
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTS------DG----- 2027 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl------~t----- 2027 (2342)
.+.+++.|.+.++|..+++.. +....++..+|+++.|++.+.++++++.|++..||.. ..
T Consensus 162 i~gtASADhTA~iWs~Esg~C---------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~ 232 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGAC---------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS 232 (481)
T ss_pred ceeecccccceeEEeeccccc---------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence 456788999999999776433 3333556778888999999999999999999999961 10
Q ss_pred ---c--------------------------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2028 ---A--------------------------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2028 ---g--------------------------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+ .++..+.||.+.|.|..|-..|+.++|+|+|.|..+||++++
T Consensus 233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-------- 304 (481)
T KOG0300|consen 233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-------- 304 (481)
T ss_pred CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC--------
Confidence 0 023467899999999999999999999999999999999986
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIRR 2157 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIrs 2157 (2342)
.+++.+.||....+.++-+|..+++++.+.|.+.++||.+.. ..+..
T Consensus 305 --------------------------------e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 305 --------------------------------EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred --------------------------------ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeee
Confidence 345678999999999999999999999999999999999843 45667
Q ss_pred EecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc--eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2158 LVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV--LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2158 L~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
|.+|. ++.+.|..|.+ ++.+..+.++++|++... ++..+. .+.+++.++++..+..++.-.
T Consensus 353 FQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPh------------ 417 (481)
T KOG0300|consen 353 FQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPH------------ 417 (481)
T ss_pred ecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEecc------------
Confidence 88875 67788887766 456778899999999753 233222 567788888876666665331
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEE----ecCCCCCeEEEEEecCC--CEEEEEeCC
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVL----KLGEGQDITALALNKDN--TNLLVSTAD 2307 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL----~lgHs~~ItsLafSPDG--~~LaSGSsD 2307 (2342)
.+..|++||+.... +..+ ..+|...|+|++|..+. ..|+++|-|
T Consensus 418 -----------------------------DNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 418 -----------------------------DNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD 467 (481)
T ss_pred -----------------------------CCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCccccccccccc
Confidence 25689999996533 3333 24888999999998654 458999999
Q ss_pred CcEEEEeCCC
Q 000085 2308 KQLIVFTDPA 2317 (2342)
Q Consensus 2308 GsIrVWDi~s 2317 (2342)
..+.-|.+..
T Consensus 468 R~v~gW~in~ 477 (481)
T KOG0300|consen 468 RMVAGWKINT 477 (481)
T ss_pred ceeeeeEecc
Confidence 9999999543
|
|
| >PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-18 Score=181.05 Aligned_cols=107 Identities=24% Similarity=0.256 Sum_probs=92.4
Q ss_pred ccccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcceeE
Q 000085 1260 KDFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCTGMRAWRKLIHCLIEMKCLFGPFEDHLSDPRRIFWK 1339 (2342)
Q Consensus 1260 r~~~e~~~k~~~~~v~~~~lar~~~R~E~~r~~~l~~~~~~r~~~a~r~W~ki~~~Lt~ERGlwGPw~~~~~s~~~~fWK 1339 (2342)
|.+.+...|+.+|.+.|++++..++++|.++.+.+..+.+|...++.+.|+||.+.|++++|.|| ....+...+|||
T Consensus 26 r~raedv~kha~FE~~~aq~~~~~~eEe~~cdhli~AarrRD~~~a~~L~~Ki~~iLtn~~GaWg---~~~~~~~~~fWk 102 (169)
T PF06469_consen 26 RQRAEDVHKHAEFESLCAQTSADRREEERMCDHLIRAARRRDHVTASRLLRKILNILTNKHGAWG---DSSSSRPSEFWK 102 (169)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCCC---CccccCccceee
Confidence 45678889999999999999999998888777777777777777788999999999999996554 544455689999
Q ss_pred eeccCCccccceeecccCCCCCCccccccc
Q 000085 1340 LDFMESSSRMRRCLRRNYMGSDHFGAAANY 1369 (2342)
Q Consensus 1340 LD~tEd~sRMRrRLvRNy~fs~H~~Aaa~~ 1369 (2342)
||.|||++|||+||||||+|++|.+|+.+.
T Consensus 103 LD~WEDD~RRRrR~V~NP~GS~H~~Atlk~ 132 (169)
T PF06469_consen 103 LDYWEDDSRRRRRFVPNPYGSTHPEATLKA 132 (169)
T ss_pred ccccccchHHHHhcCCCCCCCcchHhHHhh
Confidence 999999999999999999999999999763
|
The function of this region is not known. |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-16 Score=174.94 Aligned_cols=256 Identities=11% Similarity=0.078 Sum_probs=197.3
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCcccceec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
+|..+++++.|+++++|+...+....++. ...|.. +|--++|+|.. ..+++++.|.+|++||...+++...+
T Consensus 31 ~g~~lasgs~dktv~v~n~e~~r~~~~~~----~~gh~~---svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i 103 (313)
T KOG1407|consen 31 DGTKLASGSFDKTVSVWNLERDRFRKELV----YRGHTD---SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI 103 (313)
T ss_pred cCceeeecccCCceEEEEecchhhhhhhc----ccCCCc---chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe
Confidence 57889999999999999976543333332 223333 33347777655 48999999999999999999999887
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc---cccccCC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS---RRRRIEG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s---~~~~i~~ 2111 (2342)
....+.| -+.|+|+|++++.|+.|..|...|.++.+..... .....+.-++|+-++..+......+. ..+..-+
T Consensus 104 ~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk 180 (313)
T KOG1407|consen 104 ETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK 180 (313)
T ss_pred eccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence 7555544 5789999999999999999999999886544332 12233445556655555544444332 2244567
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
++..++.|.....|+.|+|+|+++++|+.|-.+.+||+..--|++.+..+ +++.++||.||++++.++.+..|-+-.+
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEec
Confidence 89999999999999999999999999999999999999998888888765 4899999999999999999988877666
Q ss_pred C-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2190 N-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2190 n-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
. |..+-.. ++.++...|+|+|...+|+-++.+
T Consensus 261 etGd~~~eI--~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 261 ETGDRVWEI--PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCCeEEEe--eccCCceeEEecCCCceeeEEecC
Confidence 4 6555543 388999999999999999877643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-16 Score=177.32 Aligned_cols=283 Identities=17% Similarity=0.180 Sum_probs=200.0
Q ss_pred eeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcc------------c---ceecccCCCCeEEEEecC-CCCEEEEEeCCC
Q 000085 1998 SSAVVSITH-DKEIITGGHVDGSIKLLTSDGAK------------T---LETASGHCAPVTCLALSS-DSNFLVTGSQDT 2060 (2342)
Q Consensus 1998 Svt~VafSp-DGklLASGS~DGsIrVWDl~tgk------------l---l~tL~GHt~~VtcLAfSP-DG~~LaSGS~DG 2060 (2342)
+|+.+.+.+ .|+++++|+.||.|.|||++... + .+.-.+|.-.|..+.|-| |...+.|+|.|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 344577766 47899999999999999987532 1 112357889999999999 566888999999
Q ss_pred ceEEEeccCCccccccccCCCCCCccccccCCC--C-CceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCE
Q 000085 2061 TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS--S-TPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGV 2134 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG--~-~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~l 2134 (2342)
+++|||.++.+....+ ..+..|+..+++|-. . .++++..+.. +.+++ +...+++.||.+.|.+|.|+|...+
T Consensus 125 tlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~ 202 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW 202 (397)
T ss_pred eEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCcee
Confidence 9999999986554433 345566777777632 3 3455444432 33443 6678999999999999999998776
Q ss_pred -EEEEeCCCcEEEEECCCC-eEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc
Q 000085 2135 -VVSCSDSSDLLLHSIRRG-RLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL 2212 (2342)
Q Consensus 2135 -LaSGS~DGtIrIWDLrTG-klIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP 2212 (2342)
++||+.||.|++||++.. .+.+.+..|.. .. .++......|.+.|+.++|+.
T Consensus 203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~------------------k~--------~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDIRRASGCFRVLDQHNT------------------KR--------PPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred EEEecCCCceEEEEEeecccceeEEeecccC------------------cc--------Cccccccccccceeeeeeecc
Confidence 579999999999999764 34444433221 00 011112234999999999999
Q ss_pred CCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccc----------ccccCCCCcc--CCCCeEEEEECCCCeEEEE
Q 000085 2213 DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLAS----------DQSVDNNRFD--FPSPSICFLDLHTLKVFHV 2280 (2342)
Q Consensus 2213 DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~----------~~s~ss~~ia--s~DGsIrIWDL~Tgk~L~t 2280 (2342)
||.++++.+.+.. .++|+...+......|.+-. ..+.....+. -.++.+.++++..+..+..
T Consensus 257 d~~~l~~~gtd~r------~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~ 330 (397)
T KOG4283|consen 257 DARYLASCGTDDR------IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRR 330 (397)
T ss_pred cchhhhhccCccc------eEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEe
Confidence 9999998765544 34555544332221111110 1122222221 1579999999999999999
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2281 LKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2281 L~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+. .|...|.|.++.|+-+...+|..|+.|..|..
T Consensus 331 l~-~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 331 LS-THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ee-cccceeeEEeecCchhhhhccccCCccccccc
Confidence 99 88999999999999999999999999999985
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-15 Score=185.63 Aligned_cols=363 Identities=13% Similarity=0.070 Sum_probs=224.9
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCccccccccee--------------ccccC-cceeEEEEEcCCCCEEEEEEc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALA--------------FASSG-IRSSAVVSITHDKEIITGGHV 2016 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls--------------~hs~g-I~Svt~VafSpDGklLASGS~ 2016 (2342)
.+.-..+.|+.++.+++||+|+..+.........+..+. ....+ .-..-++.|++....|.+...
T Consensus 265 CIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn 344 (1080)
T KOG1408|consen 265 CICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN 344 (1080)
T ss_pred eeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc
Confidence 344567788889999999999977632222221111110 00011 112234678888999999999
Q ss_pred CCcEEEEecCCcccc---eecccCCCCeEEEEecCC-----------CCEEEEEeCCCceEEEeccCCccccccc-cCCC
Q 000085 2017 DGSIKLLTSDGAKTL---ETASGHCAPVTCLALSSD-----------SNFLVTGSQDTTILLWRIHRAFTSRTGT-IEPS 2081 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll---~tL~GHt~~VtcLAfSPD-----------G~~LaSGS~DGTVrVWDl~tg~~i~t~~-~~~~ 2081 (2342)
|.+++|||+..-+.+ ..+--|...|+.+.--|. ..-++|||.|+||++||+..+.....+. .-..
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 999999999875433 233458888888876551 1358999999999999998742221110 0000
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV 2161 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh 2161 (2342)
.....+... |+..-+.... .... ..+......+....|.|++++|+|+++++|..-|+++|||+...+....+..|
T Consensus 425 ~~l~ki~y~-d~~~q~~~d~-~~~~--fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 425 ANLSKIPYE-DSTQQIMHDA-SAGI--FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred hhhhcCccc-cCchhhhhhc-cCCc--ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 000000000 1110000000 0000 01222334455678999999999999999999999999999999988888888
Q ss_pred CcE--EEEEec---CCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCC--CEEEEEeCCCCCCCCCcc-
Q 000085 2162 DAH--AVSLSS---EGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDG--HSALIGVNSSSTNNGSYD- 2232 (2342)
Q Consensus 2162 ~vs--sLSfSp---DG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDG--k~LaSGS~DGs~d~~i~d- 2232 (2342)
+.. ++.+|. ..++++.+.++..|++|++.. -.+....-.|...|+++.|...| ..+++++.|.++-.....
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk 580 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK 580 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence 754 444543 235777788899999999853 23333444599999999998887 667766655442111100
Q ss_pred ----cccccCCCCCCc-cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC--CCCCeEEEEEecCCCEEEEEe
Q 000085 2233 ----NIQGLNSKQSGT-EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG--EGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2233 ----~Lw~l~~~~~~~-iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg--Hs~~ItsLafSPDG~~LaSGS 2305 (2342)
+++.-......+ ..+.-.-..+.....++..|+.|+|||+.+++....++.. |.+....+...|.|.||++.+
T Consensus 581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 581 ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence 000000000000 0000000111112223346999999999999999999853 456788899999999999999
Q ss_pred CCCcEEEEeCCCC
Q 000085 2306 ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2306 sDGsIrVWDi~sL 2318 (2342)
.|.+|.++|.-+.
T Consensus 661 sdktl~~~Df~sg 673 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSG 673 (1080)
T ss_pred cCCceEEEEeccc
Confidence 9999999996544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-16 Score=175.01 Aligned_cols=218 Identities=16% Similarity=0.217 Sum_probs=176.7
Q ss_pred cCCcEEEEecCCcccceecc--cCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCC
Q 000085 2016 VDGSIKLLTSDGAKTLETAS--GHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIG 2092 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgkll~tL~--GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpD 2092 (2342)
..|.+.|-++..++-++.+. .-.+.+..++|+++ .+.+++++.||++++||+...
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~---------------------- 93 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP---------------------- 93 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC----------------------
Confidence 36889999987555554433 24678999999986 578899999999999995431
Q ss_pred CCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEe
Q 000085 2093 SSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2093 G~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfS 2169 (2342)
..|++.++.|..+|.++.|++. +..++++|.||+|++||...++.++++.+|. +....|+
T Consensus 94 -----------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 94 -----------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred -----------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 2477889999999999999974 6678889999999999999999999999987 6777888
Q ss_pred cC-CcEEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCC-CEEEEEeCCCCCCCCCcccccccCCCCCCcc
Q 000085 2170 SE-GVIMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDG-HSALIGVNSSSTNNGSYDNIQGLNSKQSGTE 2245 (2342)
Q Consensus 2170 pD-G~IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDG-k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i 2245 (2342)
|. +.+++..+.++.+++|++. |+.+. ...|...|.|+.|+.-. ..++||+.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~v----------------------- 211 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMS--IEAHNSEILCCDWSKYNHNVLATGGV----------------------- 211 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeE--EEeccceeEeecccccCCcEEEecCC-----------------------
Confidence 84 6778888889999999986 54444 33388999999999854 45555542
Q ss_pred ccccccccccCCCCccCCCCeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCC
Q 000085 2246 DFDLASDQSVDNNRFDFPSPSICFLDLHTL-KVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2246 aFspd~~~s~ss~~ias~DGsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.|++||++.. .++..+. +|+-.|+.+.|||.. ..|++++.|-+++||+..
T Consensus 212 ------------------d~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 212 ------------------DNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ------------------CceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 677999999875 4567775 999999999999965 578899999999999965
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=192.76 Aligned_cols=240 Identities=17% Similarity=0.206 Sum_probs=194.0
Q ss_pred cccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc-ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1992 ASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA-KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1992 hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg-kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
|..|.. .++|.|+|++|++++.||.|++|+..+. ....++..|...|.+++.. +++|++|+.+++|.++.+..+
T Consensus 12 ht~G~t---~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 12 HTGGLT---LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred ccCceE---EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 444543 4999999999999999999999997665 4555566588889998874 669999999999999998875
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
... ..+...+-++++++|+.+|.+++.||.|-.|++-++.
T Consensus 87 ~~~----------------------------------------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~ 126 (933)
T KOG1274|consen 87 EED----------------------------------------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD 126 (933)
T ss_pred Ccc----------------------------------------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc
Confidence 211 1122335688999999999999999999999999999
Q ss_pred CCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC--------CCCCeEEEEEccCCCEEEEE
Q 000085 2151 RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP--------LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2151 TGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~--------Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+....+.+++|. +..+.++|.|.+++...-+|.+++|++..+.+...... ....+..++|+|+|..++.-
T Consensus 127 D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 127 DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 999999999986 78899999999999999999999999975443322211 24456778999995555533
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC-CCeEEEEEecCCC
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG-QDITALALNKDNT 2299 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs-~~ItsLafSPDG~ 2299 (2342)
+. |+.|.+|+..++...+.+...+. ..+++++|+|.|.
T Consensus 207 ~~-----------------------------------------d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 207 PV-----------------------------------------DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred cc-----------------------------------------CCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 21 67899999999998888875443 3499999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 000085 2300 NLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~s 2317 (2342)
||++++.||.|.|||.+.
T Consensus 246 YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEeeeccCCcEEEEeccc
Confidence 999999999999999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=186.11 Aligned_cols=269 Identities=13% Similarity=0.171 Sum_probs=206.8
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
++.-++|-|||..|+.+ .+..+.|||...|..+++++||.+.|.|++|+.||+.++||+.|..|.+|.-.-... ..
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LK 89 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---ee
Confidence 55669999999965554 367899999999999999999999999999999999999999999999998764322 23
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
-.|...+.++.|+|-...+++++-.....|.....-..-......|.|++|..||++++-|-.||+|.+-+- +|+..-.
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~ 168 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVK 168 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceE
Confidence 457788999999999999988887766667654322111223457889999999999999999999999864 4544434
Q ss_pred Eec-----CCcEEEEEecCC-----cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2158 LVG-----VDAHAVSLSSEG-----VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2158 L~g-----h~vssLSfSpDG-----~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+.. ..+..++|+|.. .++....-..++..|.+.|+.+..... ..-...|+.+.++|.|++.|+.
T Consensus 169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~-L~FdP~CisYf~NGEy~LiGGs----- 242 (1081)
T KOG1538|consen 169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA-LNFDPCCISYFTNGEYILLGGS----- 242 (1081)
T ss_pred EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc-CCCCchhheeccCCcEEEEccC-----
Confidence 432 237889998854 244433445678899999987763321 3345679999999999999974
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
|+.+.+|.- .|-.+.++. .....|+.++..|++++++.|+.|
T Consensus 243 ------------------------------------dk~L~~fTR-~GvrLGTvg-~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 243 ------------------------------------DKQLSLFTR-DGVRLGTVG-EQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred ------------------------------------CCceEEEee-cCeEEeecc-ccceeEEEEEEccCCceEEEEEcc
Confidence 344555543 345566666 567899999999999999999999
Q ss_pred CcEEEEeC
Q 000085 2308 KQLIVFTD 2315 (2342)
Q Consensus 2308 GsIrVWDi 2315 (2342)
|+|-.|++
T Consensus 285 GTiACyNl 292 (1081)
T KOG1538|consen 285 GTIACYNL 292 (1081)
T ss_pred Ceeehhhh
Confidence 99999983
|
|
| >PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-17 Score=170.23 Aligned_cols=101 Identities=34% Similarity=0.681 Sum_probs=77.9
Q ss_pred eEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCC----CCCccccccccceEeeccceeEEeeccccCcccEEEE
Q 000085 1474 RIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPE----EGTSELRNQEKDRSWLMSSLHQIYSRRYLLRRSALEL 1549 (2342)
Q Consensus 1474 kVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~----~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEi 1549 (2342)
+|+++++|++|+|+.+.+|+|.||+++|||+.+...... ..........++++|++++|++||+|||+||++||||
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEi 80 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEI 80 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEE
Confidence 578999999999999999999999999999977211111 0111122345789999999999999999999999999
Q ss_pred EEeCCceEEEEcCChhhHHHHHHHH
Q 000085 1550 FMVDRSNFFFDFGSTEGRRNAYRAI 1574 (2342)
Q Consensus 1550 f~~~~~s~f~~F~~~~~~~~~~~~i 1574 (2342)
|+.||++|||+|.++++|+++|++|
T Consensus 81 F~~dg~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 81 FFSDGRSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EETTS-EEEEE-SSHHHHHHHHCCS
T ss_pred EEcCCcEEEEEcCCHHHHHHHHHhh
Confidence 9999999999999999999998654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-15 Score=172.40 Aligned_cols=257 Identities=14% Similarity=0.137 Sum_probs=187.5
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccC
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGH 2037 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GH 2037 (2342)
-.++++|-|++||+|..... . ...++....+.+. +.+++|+.||..+++|+.|+.+++||+.++ .+..+..|
T Consensus 41 ~~~~A~SWD~tVR~wevq~~-g---~~~~ka~~~~~~P---vL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~H 112 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNS-G---QLVPKAQQSHDGP---VLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAH 112 (347)
T ss_pred ceEEecccCCceEEEEEecC-C---cccchhhhccCCC---eEEEEEccCCceEEeeccCCceEEEEccCC-Ceeeeeec
Confidence 34567889999999986541 0 1123334444444 566999999999999999999999999999 45566789
Q ss_pred CCCeEEEEecCCCC--EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2038 CAPVTCLALSSDSN--FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~--~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
.++|.++.|-+... .|+|||+|.|++.||.+....+ .+
T Consensus 113 d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----------------------------------------~t 152 (347)
T KOG0647|consen 113 DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----------------------------------------AT 152 (347)
T ss_pred ccceeEEEEecCCCcceeEecccccceeecccCCCCee----------------------------------------ee
Confidence 99999999987655 8999999999999999874322 22
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE-EEe---cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR-RLV---GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr-sL~---gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
+. -.+.+.++.+ ...+++.+..+..|.+|+++++.... .+. ....+++++-.|+...+.+...|.+.+..++.
T Consensus 153 ~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 153 LQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD 229 (347)
T ss_pred ee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCC
Confidence 22 1234454443 35677888888999999997764322 221 13468888888888778888888888887764
Q ss_pred c-eeeeecC-CCC---------CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCc
Q 000085 2192 V-LVARAKL-PLS---------GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRF 2260 (2342)
Q Consensus 2192 ~-~L~s~~~-~Hs---------~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~i 2260 (2342)
. ......+ -|. -.|++|+|+|.-..|+|.+.
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-------------------------------------- 271 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-------------------------------------- 271 (347)
T ss_pred CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC--------------------------------------
Confidence 2 1111111 132 25788899998888887752
Q ss_pred cCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE-eCC
Q 000085 2261 DFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS-TAD 2307 (2342)
Q Consensus 2261 as~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsD 2307 (2342)
||+..+||-.....+.+.+ .|..+|++.+|+.+|.+++-+ |.|
T Consensus 272 ---DGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 272 ---DGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ---CceEEEecchhhhhhhccC-cCCCccceeEecCCCCEEEEEeecc
Confidence 7889999998888788777 799999999999999988854 444
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=190.14 Aligned_cols=237 Identities=21% Similarity=0.292 Sum_probs=192.4
Q ss_pred ccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc--eecccCCCCeEE-EEecC-CCCEEEEEeCCCc
Q 000085 1986 PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL--ETASGHCAPVTC-LALSS-DSNFLVTGSQDTT 2061 (2342)
Q Consensus 1986 p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll--~tL~GHt~~Vtc-LAfSP-DG~~LaSGS~DGT 2061 (2342)
.+.+.+|...++. +++.+ +..+++|+.||++++|+-..++.+ ..+.+|.+.|.+ +++-+ ++..|++|+.|++
T Consensus 7 s~~l~gH~~DVr~---v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 7 SHELEGHKSDVRA---VAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred EEEeccCccchhe---eEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 3444555555543 44443 447889999999999998766554 457789888888 88875 4556999999999
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
|.+|...+. .|+.+|.||...|.|+....++. ++|||.|
T Consensus 83 i~v~~~~~~----------------------------------------~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD 121 (745)
T KOG0301|consen 83 IIVFKLSQA----------------------------------------EPLYTLKGHKSNVCSLSIGEDGT-LISGSWD 121 (745)
T ss_pred EEEEecCCC----------------------------------------CchhhhhccccceeeeecCCcCc-eEecccc
Confidence 999998774 46778899999999999877777 9999999
Q ss_pred CcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEE
Q 000085 2142 SDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaS 2219 (2342)
.++++|-. +++...+.+|+ +..+..-|++ .++.++.|..|++|.- ........+|.+-|..+++-+++.++-+
T Consensus 122 ~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flSc 196 (745)
T KOG0301|consen 122 STAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSC 196 (745)
T ss_pred cceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEee
Confidence 99999974 66777788886 6777777888 7888999999999984 3444455669999999999988776643
Q ss_pred EeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC
Q 000085 2220 GVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2220 GS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
+ .||.|+.|++ +|+++.... +|..-|.+++...++.
T Consensus 197 s------------------------------------------NDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 197 S------------------------------------------NDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDG 232 (745)
T ss_pred c------------------------------------------CCceEEEEec-cCceeeeee-ccceEEEEEEecCCCC
Confidence 3 2888999999 888899988 9999999999888889
Q ss_pred EEEEEeCCCcEEEEeCC
Q 000085 2300 NLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~ 2316 (2342)
.++++|+|+++++|+..
T Consensus 233 ~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eEEEecCCceEEEeecC
Confidence 99999999999999965
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-15 Score=179.81 Aligned_cols=242 Identities=19% Similarity=0.234 Sum_probs=176.6
Q ss_pred CEEEEEE-cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2009 EIITGGH-VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2009 klLASGS-~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
.+++++. .-..+.+|.+..........--.++|.|++-+|+|.+|+.|+..|.+.+|.+.+|..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--------------- 115 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--------------- 115 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH---------------
Confidence 4555543 455789999876554443334567899999999999999999999999999999743
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---------CeEEEEE
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR---------GRLIRRL 2158 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT---------GklIrsL 2158 (2342)
+..+.+|-..|+|+.|+.|+.+++|||.||.|.+|++.+ -+.++.+
T Consensus 116 -------------------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 116 -------------------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred -------------------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 334578999999999999999999999999999998742 3466777
Q ss_pred ecCC--cEEEEEecCC--cEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2159 VGVD--AHAVSLSSEG--VIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2159 ~gh~--vssLSfSpDG--~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
..|. ++.+.+++.| ..++..+.|.++++|++. |..+.... ....|.+++++|-+..+++|+.+|.+....
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~--- 245 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNL--- 245 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeee---
Confidence 7775 5556555543 456667889999999997 44444444 568899999999999999998766621111
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ--DITALALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~--~ItsLafSPDG~~LaSGSsDGsIr 2311 (2342)
++.... .. .+=..+.++.. +..+..+. ||.. .|+|++++-||..|++|+.||.|+
T Consensus 246 ~~~~~~------------~~---------~~v~~k~~~~~-~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 246 LFKLSG------------QS---------AGVNQKGRHEE-NTQINVLV-GHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred hhcCCc------------cc---------ccccccccccc-cceeeeec-cccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 111110 00 00012222222 23345566 7877 999999999999999999999999
Q ss_pred EEeCCCC
Q 000085 2312 VFTDPAL 2318 (2342)
Q Consensus 2312 VWDi~sL 2318 (2342)
|||+.+.
T Consensus 303 vWdi~S~ 309 (476)
T KOG0646|consen 303 VWDIYSK 309 (476)
T ss_pred EEecchH
Confidence 9996554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=185.31 Aligned_cols=314 Identities=15% Similarity=0.110 Sum_probs=217.7
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccce---eccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC-c--cc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRAL---AFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG-A--KT 2030 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sl---s~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t-g--kl 2030 (2342)
+..|.+++.|+++-+|..... ..-|.-.-++ .+..++.- ..-|+|+++.+++-+..|..++|.... . ..
T Consensus 279 ~~~LLSASaDksmiiW~pd~~--tGiWv~~vRlGe~gg~a~GF~---g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~ 353 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDEN--TGIWVDVVRLGEVGGSAGGFW---GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQ 353 (764)
T ss_pred hhhheecccCcceEEEecCCc--cceEEEEEEeeccccccccee---eEEEcCCCCEEEEecccCcEEEEeccCccceee
Confidence 346778999999999986542 1234221111 11222332 377999999999999999999998322 2 23
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc-ccccc--ccCCCCCCccccccC----------------
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF-TSRTG--TIEPSSGMGTPGNSI---------------- 2091 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~-~i~t~--~~~~~~~V~svs~Sp---------------- 2091 (2342)
...+.||.+.|+.++|+|.|.+|+|.|.|.|-|++---..+ .-+.+ ..-|.....++++-+
T Consensus 354 ~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 354 EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeee
Confidence 34578999999999999999999999999999987544111 01111 111122222222211
Q ss_pred --------------------------CCCCc-eeecCC----------Ccc--------------------------ccc
Q 000085 2092 --------------------------GSSTP-ANASAD----------KSR--------------------------RRR 2108 (2342)
Q Consensus 2092 --------------------------DG~~L-as~s~D----------~s~--------------------------~~~ 2108 (2342)
+|-.+ +.+..+ +.. ...
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 11000 000000 000 000
Q ss_pred cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCC
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS-----DLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQ 2181 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG-----tIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssd 2181 (2342)
+...++.++||...|+|++.+|++++++|++... .|++|+..+-..++.+.+|. ++.++|||||++++..++|
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 0123677899999999999999999999998754 58999999888888898886 7899999999999999999
Q ss_pred CeEEEEEeCCceeeee----cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCC
Q 000085 2182 HTLSSFTLNGVLVARA----KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDN 2257 (2342)
Q Consensus 2182 GsI~I~dlnG~~L~s~----~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss 2257 (2342)
.++.+|.......... ...|..-|++..|+|++.+++|+|.
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR----------------------------------- 638 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASR----------------------------------- 638 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecC-----------------------------------
Confidence 9999999743222222 2239999999999999999999973
Q ss_pred CCccCCCCeEEEEECCCC--eEEEE-EecCCCCCeEEEEEec----C-CCEEEEEeCCCcEEEEeCC
Q 000085 2258 NRFDFPSPSICFLDLHTL--KVFHV-LKLGEGQDITALALNK----D-NTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2258 ~~ias~DGsIrIWDL~Tg--k~L~t-L~lgHs~~ItsLafSP----D-G~~LaSGSsDGsIrVWDi~ 2316 (2342)
|.+|.||..... +.+.. ....++..|++++|.| + +..+++|...|.|.+|..+
T Consensus 639 ------DK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 639 ------DKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ------CceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 777999988776 44333 2225888999999987 2 2367889999999999955
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=175.68 Aligned_cols=255 Identities=17% Similarity=0.199 Sum_probs=203.2
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+|-.+++++-|+.-.+-++.+| +| ..+..+|.+.+-+ .++..+....|+++.|-+-+|||.-+|..+.++.
T Consensus 28 ~g~flisa~kd~~pmlr~g~tg----dw--igtfeghkgavw~---~~l~~na~~aasaaadftakvw~a~tgdelhsf~ 98 (334)
T KOG0278|consen 28 DGYFLISASKDGKPMLRNGDTG----DW--IGTFEGHKGAVWS---ATLNKNATRAASAAADFTAKVWDAVTGDELHSFE 98 (334)
T ss_pred CceEEEEeccCCCchhccCCCC----Cc--EEeeeccCcceee---eecCchhhhhhhhcccchhhhhhhhhhhhhhhhh
Confidence 4445677777766555566553 34 2234456655544 6677777789999999999999999999998886
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~ 2112 (2342)
|...|..++|+.|.++|+||+.+..++|+|++..........++++++..+.|....+.+.+...++. +.|+. ...
T Consensus 99 -hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 99 -HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred -hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 99999999999999999999999999999999876655557788999999988887777777666654 55765 445
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeC-
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLN- 2190 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dln- 2190 (2342)
++.+. -..+|+++.++++|++|.+ ...+.|.+||..+-..++.++.. .+...+.+|+..+++.+..+..++.|+.+
T Consensus 178 v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 178 VQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred EEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccC
Confidence 55554 3568999999999986654 45679999999999999888764 47888999999999999999999999987
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|..+.....+|.++|.|+.|+|||...++||.
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCC
Confidence 55555545669999999999999999998874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=181.53 Aligned_cols=241 Identities=14% Similarity=0.197 Sum_probs=183.1
Q ss_pred EEEcCCCC-EEEEEEcCCcEEEEecCCcc----------cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccC
Q 000085 2002 VSITHDKE-IITGGHVDGSIKLLTSDGAK----------TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2002 VafSpDGk-lLASGS~DGsIrVWDl~tgk----------ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~t 2069 (2342)
+.+-|+.. +||+++..+.|.|||...-. +-.++.||.+.=..++|++. ..+|++|+.|++|++||+..
T Consensus 130 aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 130 ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccc
Confidence 55566655 78888999999999986421 12378899997888999985 45899999999999999987
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWD 2148 (2342)
..... ..-.+...+.+|...|..++|++- ..++++++.|+.+.|||
T Consensus 210 ~~~~~---------------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 210 ESKED---------------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred cccCC---------------------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence 42110 012456788999999999999984 67789999999999999
Q ss_pred CCC--CeEEEEEecCC--cEEEEEecCC-cEEEEEeCCCeEEEEEeCCcee-eeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2149 IRR--GRLIRRLVGVD--AHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLV-ARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2149 LrT--GklIrsL~gh~--vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L-~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+|+ .+..+....|. +.+++|+|-+ .+++.++.+++|.+|++..-.. .....+|...|.+|.|||....+++.+
T Consensus 257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS- 335 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS- 335 (422)
T ss_pred cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec-
Confidence 994 45555666664 7899999855 5666777899999999864221 222334999999999999877666443
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--------------eEEEEEecCCCCC
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--------------KVFHVLKLGEGQD 2288 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--------------k~L~tL~lgHs~~ 2288 (2342)
|. |+.+.|||+..- ++++.-. ||...
T Consensus 336 -g~--------------------------------------D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg-GH~~k 375 (422)
T KOG0264|consen 336 -GT--------------------------------------DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG-GHTAK 375 (422)
T ss_pred -cc--------------------------------------CCcEEEEeccccccccChhhhccCCcceeEEec-Ccccc
Confidence 22 777888888542 2234444 89999
Q ss_pred eEEEEEecCCCEE-EEEeCCCcEEEEeCC
Q 000085 2289 ITALALNKDNTNL-LVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2289 ItsLafSPDG~~L-aSGSsDGsIrVWDi~ 2316 (2342)
|..+.|+|...++ ++.++|+.+.||...
T Consensus 376 V~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 376 VSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999988765 577999999999954
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=183.63 Aligned_cols=294 Identities=14% Similarity=0.117 Sum_probs=196.2
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee--ccc
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET--ASG 2036 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t--L~G 2036 (2342)
.++.+..++.|.+|+........ -.+.+.+-..+...+.-+.|.|....|++.+.|.++++||+.+++++.. +.|
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~---ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRL---EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred eEEEecCCCceeeecchhhhcch---hhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 45556677788888754311110 0111222233444455588999555899999999999999999988876 899
Q ss_pred CCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccc--c----ccCCCCCCccccccCCCCCceeecCCCcccccc
Q 000085 2037 HCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRT--G----TIEPSSGMGTPGNSIGSSTPANASADKSRRRRI 2109 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t--~----~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i 2109 (2342)
|++.|.+++|.|+. ..|+||+.||.|.|||++-...-.. + ...+..+. .| .-..
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-----tp--------------skp~ 203 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-----TP--------------SKPL 203 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-----CC--------------Cchh
Confidence 99999999999964 6789999999999999976431110 0 00010000 00 0000
Q ss_pred CCceEEecCCCCCeEE---EEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEEe--------c-----CCcEEEEEecCC
Q 000085 2110 EGPIHVLRGHHREILC---CCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRRLV--------G-----VDAHAVSLSSEG 2172 (2342)
Q Consensus 2110 ~~~l~~L~GHs~~Vt~---VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrsL~--------g-----h~vssLSfSpDG 2172 (2342)
.+.+..-..|...|.+ +.+..|...|||+|. |+.|+|||+++........ . ++...++....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 1112223445555554 455578888998887 9999999999765443321 1 235677778888
Q ss_pred cEEEEEeCCCeEEEEEeCCceeee--ecCCC--CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2173 VIMTWNKLQHTLSSFTLNGVLVAR--AKLPL--SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2173 ~IlVwdssdGsI~I~dlnG~~L~s--~~~~H--s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
..++..+.|+.|+.|++.+..+.- ...++ ...-..-..+||+.++++|+.
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs-------------------------- 337 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS-------------------------- 337 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC--------------------------
Confidence 999999999999999986522211 11111 111122356889999998863
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeC
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi 2315 (2342)
|...++|.+.+.+.--.+..+|...|++++|.|.. .-+++++.|-+++||++
T Consensus 338 ---------------d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 338 ---------------DEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ---------------CcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 56689999988766555556999999999998843 45888899999999996
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.3e-15 Score=169.29 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=182.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCC---ccc
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDG---AKT 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~t---gkl 2030 (2342)
.+|+.+++++.|++||+|+..... ..+..+ +. .+-...-.+.+.|+||-+ ++++....+++++|.... |..
T Consensus 96 SdGK~lat~~~Dr~Ir~w~~~DF~-~~eHr~---~R-~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~ 170 (420)
T KOG2096|consen 96 SDGKKLATISGDRSIRLWDVRDFE-NKEHRC---IR-QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSG 170 (420)
T ss_pred CCCceeEEEeCCceEEEEecchhh-hhhhhH---hh-ccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCC
Confidence 579999999999999999865411 011111 10 111222346699999988 666666778899997643 221
Q ss_pred ce---------ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2031 LE---------TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2031 l~---------tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
.. .-..|.-.|..+-...++.+|+|+|.|.+|.+|++. |+.+... ......-...+.||+|++++++..
T Consensus 171 ~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i-dtnq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 171 SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI-DTNQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred CcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee-ccccccccceeeCCCCcEEEEecC
Confidence 11 113466778888888889999999999999999999 4444333 122233455678999999977765
Q ss_pred C-Ccccccc----------CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----C---eEEEEEe----
Q 000085 2102 D-KSRRRRI----------EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR----G---RLIRRLV---- 2159 (2342)
Q Consensus 2102 D-~s~~~~i----------~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT----G---klIrsL~---- 2159 (2342)
. .+..|.+ -..+..+.||...|+..+|+++...++|.|.||+++|||+.- + +.++...
T Consensus 249 TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~ 328 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLH 328 (420)
T ss_pred CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchh
Confidence 4 3444543 123567899999999999999999999999999999999752 1 1222221
Q ss_pred --cCCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2160 --GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2160 --gh~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+....-++.||+|.+++... ...+++|... |.........|...|.+++|+++|+++++++
T Consensus 329 aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 329 AAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred hcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 11235789999999888764 3457777764 5555554455999999999999999999886
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=190.99 Aligned_cols=238 Identities=17% Similarity=0.193 Sum_probs=186.3
Q ss_pred eEEEEEcC-CCCEEEEEEcCCcEEEEecCC---cccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccc
Q 000085 1999 SAVVSITH-DKEIITGGHVDGSIKLLTSDG---AKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1999 vt~VafSp-DGklLASGS~DGsIrVWDl~t---gkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
+.-|.|.. +.++||+++..|.|.+||+.. .+.+..+..|+..|+++.|++. ..+|+|||+||+|++||++....
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence 33456653 456999999999999999986 5677789999999999999984 57899999999999999987432
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTG 2152 (2342)
..++.+....|..|.|+|. +..++++...|.+.+||+|..
T Consensus 169 ---------------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 169 ---------------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred ---------------------------------------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 2234556788999999984 788999999999999999864
Q ss_pred -eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec-CCCCCCeEEEEEccCCCEEEEEeCCCCCCC
Q 000085 2153 -RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK-LPLSGSIGCMEISLDGHSALIGVNSSSTNN 2228 (2342)
Q Consensus 2153 -klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~-~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~ 2228 (2342)
++...+..|. +.++.|+|++.+++.+++|+.+++|+..+....... .....+|.+|.|-|+..+.++.+ +
T Consensus 210 ~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtc---s--- 283 (839)
T KOG0269|consen 210 DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATC---S--- 283 (839)
T ss_pred hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhh---h---
Confidence 5666677775 678889999999999999999999999853332221 22457899999999887665332 1
Q ss_pred CCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe-EEEEEecCCCCCeEEEEEec-CCCEEEEEeC
Q 000085 2229 GSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VFHVLKLGEGQDITALALNK-DNTNLLVSTA 2306 (2342)
Q Consensus 2229 ~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSP-DG~~LaSGSs 2306 (2342)
-+.|-.|+|||++..- +..++. .|...++.++|-. |...|.+++.
T Consensus 284 --------------------------------mv~dtsV~VWDvrRPYIP~~t~~-eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 284 --------------------------------MVVDTSVHVWDVRRPYIPYATFL-EHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred --------------------------------ccccceEEEEeeccccccceeee-ccCccccceeccCCCceeeEeecC
Confidence 1137789999998654 344555 8999999999965 5567889999
Q ss_pred CCcEEEEeC
Q 000085 2307 DKQLIVFTD 2315 (2342)
Q Consensus 2307 DGsIrVWDi 2315 (2342)
||+|..-.+
T Consensus 331 D~tv~qh~~ 339 (839)
T KOG0269|consen 331 DGTVLQHLF 339 (839)
T ss_pred ccHHHHhhh
Confidence 998876543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=185.45 Aligned_cols=314 Identities=15% Similarity=0.105 Sum_probs=210.9
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC---EEEEEEcCCcEEEEecCCcc-------
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE---IITGGHVDGSIKLLTSDGAK------- 2029 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk---lLASGS~DGsIrVWDl~tgk------- 2029 (2342)
++.++++..+.++.... ..+..-..+.+|..-|++ ++|...+. +||+|+.|..||||.+.-+.
T Consensus 162 la~Ggs~~~v~~~s~~~----d~f~~v~el~GH~DWIrs---l~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~ 234 (764)
T KOG1063|consen 162 LACGGSKFVVDLYSSSA----DSFARVAELEGHTDWIRS---LAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER 234 (764)
T ss_pred EEecCcceEEEEeccCC----cceeEEEEeeccchhhhh---hhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc
Confidence 34566666777776432 123333455666666666 77765544 99999999999999763211
Q ss_pred --------------cc----------eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc------ccC
Q 000085 2030 --------------TL----------ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG------TIE 2079 (2342)
Q Consensus 2030 --------------ll----------~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~------~~~ 2079 (2342)
.. ..+.||.+.|.++.|+|.+..|+|+|.|.++.+|.......+... ..+
T Consensus 235 e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg 314 (764)
T KOG1063|consen 235 EDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG 314 (764)
T ss_pred ccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence 11 124599999999999999999999999999999988764322211 123
Q ss_pred CCCCCccccccCCCCCceeecCC-CccccccC-----CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASAD-KSRRRRIE-----GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~-----~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
...+.....|++++..+.+.+.. +-..|... .+.....||.+.|+.++|+|.|.+++|.|.|.|-+++-.-..+
T Consensus 315 ~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 315 SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc
Confidence 34456777889998777555544 34556532 2345668999999999999999999999999999998654111
Q ss_pred -EEE-----EEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC------------------------------------
Q 000085 2154 -LIR-----RLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG------------------------------------ 2191 (2342)
Q Consensus 2154 -lIr-----sL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG------------------------------------ 2191 (2342)
.-+ ++.++...++++-+....++.+.....+++|....
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 111 12233445555544333333333333334433210
Q ss_pred --------ce--------------------------------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2192 --------VL--------------------------------VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2192 --------~~--------------------------------L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.. -....++|...|++++.+|+|+++++++.+..
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~------ 548 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL------ 548 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC------
Confidence 00 00011246677777777777777776643222
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIr 2311 (2342)
.....|++|+..+...++.+. +|+-.|+.++|||||++|++.+.|.++.
T Consensus 549 ------------------------------~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 549 ------------------------------KEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred ------------------------------ccceEEEEEeccchhhhheec-ccceEEEEEEECCCCcEEEEeecCceEE
Confidence 123469999999988888888 9999999999999999999999999999
Q ss_pred EEeCCC
Q 000085 2312 VFTDPA 2317 (2342)
Q Consensus 2312 VWDi~s 2317 (2342)
+|....
T Consensus 598 l~~~~~ 603 (764)
T KOG1063|consen 598 LYEVQE 603 (764)
T ss_pred eeeeec
Confidence 999643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-16 Score=195.52 Aligned_cols=216 Identities=19% Similarity=0.310 Sum_probs=182.7
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
++.+++|+.|-.+-+|.... .|. ...+.+|..+|.+ +.|+++..+|++|+.+|+|++||+..++.++++.|
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~k-----p~~-i~S~~~hespIeS---l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg 110 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGK-----PNA-ITSLTGHESPIES---LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG 110 (825)
T ss_pred ceeeccCCCceeeccccccC-----Cch-hheeeccCCccee---eecCcchhhhcccccCCceeeeehhhhhhhhhhhc
Confidence 45566777777777775321 121 1235677777766 99999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
|...++.+.|+|-+.|.++||.|+.+++||++.. ++.+.+
T Consensus 111 h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~----------------------------------------Gc~~~~ 150 (825)
T KOG0267|consen 111 HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK----------------------------------------GCSHTY 150 (825)
T ss_pred cccCcceeeeccceEEeccccccccceehhhhcc----------------------------------------Cceeee
Confidence 9999999999999999999999999999999863 456677
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCcee
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV 2194 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L 2194 (2342)
.+|...|.++.|+|+|.++++|+.|.+++|||...|+.+..|..|+ +..+.|+|...++.-+..++.+++|++....+
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 8999999999999999999999999999999999999999999876 56677888888888888899999999875444
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.....+....|.|..|+++|..+++|.
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCc
Confidence 444444678999999999999999884
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-15 Score=167.76 Aligned_cols=234 Identities=11% Similarity=0.092 Sum_probs=178.5
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCc---ccceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGA---KTLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tg---kll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+...--|+.||+++.|++|+|+.+... +++.+|.||.++|+.++|.. -|.+|+|+|.||.|.||.-.++.-
T Consensus 17 a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w---- 92 (299)
T KOG1332|consen 17 AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW---- 92 (299)
T ss_pred hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch----
Confidence 445556899999999999999998754 46788999999999999976 699999999999999999877521
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCC--
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIRRG-- 2152 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLrTG-- 2152 (2342)
...+....|...|++|+|.|. |-.|++++.||.|.|.+.++.
T Consensus 93 ----------------------------------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 93 ----------------------------------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred ----------------------------------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 233456789999999999885 678899999999999988754
Q ss_pred eEE-EEEecC--CcEEEEEecC---C-----------cEEEEEeCCCeEEEEEeCCc--eeeeecCCCCCCeEEEEEccC
Q 000085 2153 RLI-RRLVGV--DAHAVSLSSE---G-----------VIMTWNKLQHTLSSFTLNGV--LVARAKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2153 klI-rsL~gh--~vssLSfSpD---G-----------~IlVwdssdGsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPD 2213 (2342)
... +....| +++.+++.|. | +-++.+..|..+.+|..+.. .+......|.+.|..++|.|.
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 222 223334 3688888875 4 34677778889999998642 223334459999999999996
Q ss_pred C----CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--eEEEEEecCCCC
Q 000085 2214 G----HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--KVFHVLKLGEGQ 2287 (2342)
Q Consensus 2214 G----k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--k~L~tL~lgHs~ 2287 (2342)
- .++++++ .||++.||..... .-..++......
T Consensus 219 ~gl~~s~iAS~S-----------------------------------------qDg~viIwt~~~e~e~wk~tll~~f~~ 257 (299)
T KOG1332|consen 219 VGLPKSTIASCS-----------------------------------------QDGTVIIWTKDEEYEPWKKTLLEEFPD 257 (299)
T ss_pred cCCCceeeEEec-----------------------------------------CCCcEEEEEecCccCcccccccccCCc
Confidence 4 3455554 3778888876521 111222213457
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2288 DITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2288 ~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+..+.||..|..|++++.|+.|.+|.
T Consensus 258 ~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 258 VVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ceEEEEEeccccEEEEecCCcEEEEEE
Confidence 899999999999999999999999998
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=162.76 Aligned_cols=227 Identities=13% Similarity=0.157 Sum_probs=167.1
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
+++++++.|+.|++||+.+++.+..+.+|.. +.+++|+|+++.+ ++++.|++|++||..++...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-------------- 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-------------- 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--------------
Confidence 5788899999999999999998888886654 6789999999876 56788999999998874321
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeEEEEEec-CCcEE
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVS-CSDSSDLLLHSIRRGRLIRRLVG-VDAHA 2165 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaS-GS~DGtIrIWDLrTGklIrsL~g-h~vss 2165 (2342)
..+..+. .+..++|+|+++.+++ ++.|+.|++||+++++.+..+.. .....
T Consensus 67 --------------------------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 119 (300)
T TIGR03866 67 --------------------------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEG 119 (300)
T ss_pred --------------------------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcce
Confidence 1122222 2457889999987754 55689999999999988888763 34678
Q ss_pred EEEecCCcEEEEEeCCC-eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2166 VSLSSEGVIMTWNKLQH-TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2166 LSfSpDG~IlVwdssdG-sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
++++|+|.+++....++ .+..|+.......... .....+.+++|+++|+++++++.
T Consensus 120 ~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~---------------------- 176 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV-LVDQRPRFAEFTADGKELWVSSE---------------------- 176 (300)
T ss_pred EEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE-EcCCCccEEEECCCCCEEEEEcC----------------------
Confidence 99999999988876654 4666787643332211 13345678999999998875531
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC----CC--CCeEEEEEecCCCEEEEE-eCCCcEEEEeCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG----EG--QDITALALNKDNTNLLVS-TADKQLIVFTDPA 2317 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg----Hs--~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~s 2317 (2342)
.++.|++||+.+++.+..+... +. .....++|+|++++++++ +.++.|.+||..+
T Consensus 177 ------------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 177 ------------------IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ------------------CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 1578999999999887766411 11 123568899999986554 5677899999765
Q ss_pred C
Q 000085 2318 L 2318 (2342)
Q Consensus 2318 L 2318 (2342)
.
T Consensus 239 ~ 239 (300)
T TIGR03866 239 Y 239 (300)
T ss_pred C
Confidence 4
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-14 Score=155.86 Aligned_cols=263 Identities=14% Similarity=0.163 Sum_probs=203.8
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc------c--------ccccCCCCCCccccccCCCCCceeecCC
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS------R--------TGTIEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i------~--------t~~~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
.+..|.+++|+|.|.+.+.||...|.+|.....-... . +....|.+.+++.+|+|+|..+++++.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 4567999999999999999999999998754321110 0 1134577889999999999999999999
Q ss_pred Ccccc--------ccCCceEEecCCCCCeEEEEEecC----CCEEEEEe-CCCcEEEEECCCCeEEEEEecCCcEEEE-E
Q 000085 2103 KSRRR--------RIEGPIHVLRGHHREILCCCVSSD----LGVVVSCS-DSSDLLLHSIRRGRLIRRLVGVDAHAVS-L 2168 (2342)
Q Consensus 2103 ~s~~~--------~i~~~l~~L~GHs~~Vt~VafSPD----g~lLaSGS-~DGtIrIWDLrTGklIrsL~gh~vssLS-f 2168 (2342)
+.... ...++-..+.-|.+.|..++|-.+ +.++++++ .|..|++-|..+|+..+.+.+|....++ +
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 76542 123445677889999999999643 55677765 5778888899999999999999877766 4
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCce-eeeecCC------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVL-VARAKLP------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ 2241 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~-L~s~~~~------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~ 2241 (2342)
+-+|..++.+..+.+|+.|++.-.. +...... ....|.++++.|.|++|++|-.
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~------------------- 251 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA------------------- 251 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-------------------
Confidence 7788888888999999999985321 1111111 2467999999999999998842
Q ss_pred CCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCChh
Q 000085 2242 SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLK 2321 (2342)
Q Consensus 2242 ~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs~k 2321 (2342)
|.+..+||++.++.++.+. .|...|+|+.|||...++++|+.|..|++=|.++--..
T Consensus 252 ----------------------dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 252 ----------------------DSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred ----------------------CCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence 5668899999999999998 89999999999999999999999999999997643222
Q ss_pred hh---------hhhhhccccCCCcccccc
Q 000085 2322 VV---------DQMLKLGWEGDGLSPLIK 2341 (2342)
Q Consensus 2322 ~L---------dQLLk~GWegDGLspLis 2341 (2342)
.+ +..++.-|.+..++=+.+
T Consensus 309 el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 309 ELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred cCceEEEEeccCceEEEEecCccceeeec
Confidence 22 456677898887765443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=178.79 Aligned_cols=231 Identities=14% Similarity=0.119 Sum_probs=186.7
Q ss_pred CceeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc
Q 000085 1950 TPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK 2029 (2342)
Q Consensus 1950 s~flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk 2029 (2342)
+..++++|+.++.++...++.||+...-.....-.+ ...-..+.+++++||.++.++++.||.|.|||+.+..
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikael-------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL-------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhc-------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 456789999999999999999999654111111111 1111234568999999999999999999999999999
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc-cc
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RR 2108 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~ 2108 (2342)
.++.|+||++.+.||.+++||..|.||+-|.+|+-||++.+...... .....|.++..+|.+..++++..+.... ..
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEe
Confidence 99999999999999999999999999999999999999987654332 3455678888999999999998775432 22
Q ss_pred c-CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEE
Q 000085 2109 I-EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSS 2186 (2342)
Q Consensus 2109 i-~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I 2186 (2342)
. ....+.+.-|...|.++.|.+-|+++++.+.|..+..|..--|..+...+. ..+.++.+|.|.+++|.+..+..-.+
T Consensus 621 ~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 621 TSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred cCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEE
Confidence 2 344567778999999999999999999999999999999988887766654 35788889999999999988877777
Q ss_pred EEe
Q 000085 2187 FTL 2189 (2342)
Q Consensus 2187 ~dl 2189 (2342)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.4e-14 Score=174.14 Aligned_cols=274 Identities=11% Similarity=0.094 Sum_probs=203.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc-ceecccCC-CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-LETASGHC-APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl-l~tL~GHt-~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.+.+++++.+.+.||.|-.||.|.+|++..+=. ...+.||. ..|.+++|+ ++..|+|.+.+|+|.-||+.+++....
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEE
Confidence 356699999999999999999999999987643 44667765 579999999 677899999999999999999765444
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCc-----eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP-----IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~-----l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
. ....+.+++++.+|.+..++.++.++.......++ ...|.-.++.|.++.|++++..+++|+.||.|++||..
T Consensus 106 ~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 106 I-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred e-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 3 34567789999999999999998888543222111 23344456899999999999999999999999999999
Q ss_pred CCeEEEEEec-----CC-----cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2151 RGRLIRRLVG-----VD-----AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2151 TGklIrsL~g-----h~-----vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
++..+..... .. +..+.+-.|+.+ +.+...|.|..|+.....+......|...|.|++.++++.+++++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI-~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTI-ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecCcE-EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEc
Confidence 9987763221 11 355555566664 455667999999986444444444599999999999999999988
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE---EEEEecCCCCCeEEEEEecC
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV---FHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~---L~tL~lgHs~~ItsLafSPD 2297 (2342)
+.|+. |.-+...+.+. .......|...|.+++..++
T Consensus 264 Gvd~~-----------------------------------------ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 264 GVDPK-----------------------------------------IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred cCCCc-----------------------------------------eEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 75443 33333322211 11122267778888888877
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 000085 2298 NTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2298 G~~LaSGSsDGsIrVWDi~s 2317 (2342)
.|++||.|+.+.+-....
T Consensus 303 --~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 --ALISGGRDFTLAICSSRE 320 (691)
T ss_pred --eEEecceeeEEEEccccc
Confidence 688899998888876544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-14 Score=164.00 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=180.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC--EEEEEEcCCcEEEEecCCccccee
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE--IITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk--lLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
+|..++++++|-+|+||+.+... + -..+..| ..+++++.|.++-. .|.+|+.||.|.+|+...-.++.+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~---q---lg~ll~H---agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s 122 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRK---Q---LGILLSH---AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS 122 (362)
T ss_pred cceeEeccCCCCcEEEEeccchh---h---hcceecc---ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence 56788999999999999976511 1 1123333 34567799998876 899999999999999999999999
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
+++|.+.|+.++.+|.|++-++.+.|+.++.||+.+++....
T Consensus 123 lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-------------------------------------- 164 (362)
T KOG0294|consen 123 LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-------------------------------------- 164 (362)
T ss_pred ecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee--------------------------------------
Confidence 999999999999999999999999999999999988642111
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
..+ .| .-+.|.|+|.|.+++.++.+ .|-+|.+.+....+.+.... +.++.|. ++..++.+..++.+.+|+.+..
T Consensus 165 ~~L-~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 165 LNL-KN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred ecc-CC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC
Confidence 011 11 22338899999988887775 68889888776666555432 3333333 4556666777888888888754
Q ss_pred eeeeecCCCCCCeEEEEE--ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2193 LVARAKLPLSGSIGCMEI--SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2193 ~L~s~~~~Hs~~ItsLaf--SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
........|..+|.++.+ .|++.+|+++|. ||.|+||
T Consensus 240 ~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS-----------------------------------------DG~I~vW 278 (362)
T KOG0294|consen 240 TPLTEFLAHENRVKDIASYTNPEHEYLVTASS-----------------------------------------DGFIKVW 278 (362)
T ss_pred ccceeeecchhheeeeEEEecCCceEEEEecc-----------------------------------------CceEEEE
Confidence 555555669999999984 467888888863 7789999
Q ss_pred ECCCC-----eEEEEEecCCCCCeEEEEEe
Q 000085 2271 DLHTL-----KVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2271 DL~Tg-----k~L~tL~lgHs~~ItsLafS 2295 (2342)
|+... +.+..+. .+..++|+...
T Consensus 279 d~~~~~k~~~~~l~e~n--~~~RltCl~~~ 306 (362)
T KOG0294|consen 279 DIDMETKKRPTLLAELN--TNVRLTCLRVK 306 (362)
T ss_pred EccccccCCcceeEEee--cCCccceeeeh
Confidence 99765 3444444 24556666543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.1e-14 Score=161.27 Aligned_cols=266 Identities=12% Similarity=0.070 Sum_probs=174.3
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccC
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~t 2069 (2342)
-.-+.++.|.+.|+.+|+|+.|++|+|||.++. .+....+.|.+.|..+.|.+ -|+.++++|.|+++.||.-..
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~ 92 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE 92 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence 345677999999999999999999999996543 34566788999999999976 389999999999999997642
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIW 2147 (2342)
.... .....| ....++......|+.|+|.|. |-.+++++.||+++||
T Consensus 93 ~~~~----------------------------~~~~~W---v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 93 KSEE----------------------------AHGRRW---VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred cccc----------------------------ccccee---EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 1000 001112 234566777889999999985 7789999999999999
Q ss_pred ECCCCeEEE------EEe-------cC--CcEEEEEecCC---cEEEEEeCC-----CeEEEEEeC--Cce-eeee-cCC
Q 000085 2148 SIRRGRLIR------RLV-------GV--DAHAVSLSSEG---VIMTWNKLQ-----HTLSSFTLN--GVL-VARA-KLP 2200 (2342)
Q Consensus 2148 DLrTGklIr------sL~-------gh--~vssLSfSpDG---~IlVwdssd-----GsI~I~dln--G~~-L~s~-~~~ 2200 (2342)
+.-.-..+. .+. .+ ...+++|++.. ..++.+..+ +.+.+|..+ ++. .... ...
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 875432222 222 01 13566776532 344555433 466777664 322 2222 224
Q ss_pred CCCCeEEEEEccC----CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe
Q 000085 2201 LSGSIGCMEISLD----GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK 2276 (2342)
Q Consensus 2201 Hs~~ItsLafSPD----Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk 2276 (2342)
|..+|+.++|.|+ ...|++++.||. ++|.+...... + +. +..... + ...++ .-+
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDgv-------~I~~v~~~~s~-i-~~-ee~~~~--------~---~~~~l-~v~ 279 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDGV-------RIFKVKVARSA-I-EE-EEVLAP--------D---LMTDL-PVE 279 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCcE-------EEEEEeeccch-h-hh-hcccCC--------C---Ccccc-ceE
Confidence 9999999999996 356777765442 22222211000 0 00 000000 0 00000 123
Q ss_pred EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2277 VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2277 ~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
.+..+. +|.+.|..+.|+-.|..|.+.|.||.|++|..
T Consensus 280 ~vs~~~-~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 280 KVSELD-DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred Eeeecc-CCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 345555 89999999999999999999999999999983
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=163.78 Aligned_cols=229 Identities=15% Similarity=0.196 Sum_probs=175.8
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCCccc--c
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDGAKT--L 2031 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~tgkl--l 2031 (2342)
-|++|+++++|++||||...... .-.....+.+|.+++-. ++|.+ .|.+||+++.||.|.||.-.+|+- .
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~---~s~ll~~L~Gh~GPVwq---v~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNG---QSKLLAELTGHSGPVWK---VAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA 95 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCC---CceeeeEecCCCCCeeE---EeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence 48999999999999999855411 11234456777777655 78877 799999999999999999988853 3
Q ss_pred eecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCC--ccccccccCCCCCCccccccCC---C-----------
Q 000085 2032 ETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRA--FTSRTGTIEPSSGMGTPGNSIG---S----------- 2093 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg--~~i~t~~~~~~~~V~svs~SpD---G----------- 2093 (2342)
.....|...|++++|.|. |-.|+++|.||+|.|.+.+.. .....+...|..++.++++.|. |
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 456789999999999986 578999999999999998875 2223336678888999988885 3
Q ss_pred CCceeecCCCc-cccccC----CceEEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEEEECCCC------eEEEEE
Q 000085 2094 STPANASADKS-RRRRIE----GPIHVLRGHHREILCCCVSSDL----GVVVSCSDSSDLLLHSIRRG------RLIRRL 2158 (2342)
Q Consensus 2094 ~~Las~s~D~s-~~~~i~----~~l~~L~GHs~~Vt~VafSPDg----~lLaSGS~DGtIrIWDLrTG------klIrsL 2158 (2342)
+.+++++.|.. ..|... .....|.+|.+.|+.++|.|.- .+++|||.||+|.||..+.. +++..|
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f 255 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF 255 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Confidence 34666666654 445543 2345689999999999999973 57999999999999987632 122221
Q ss_pred ecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2159 VGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2159 ~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
...+..++||..|.++..+..++.+.+|.-+.
T Consensus 256 -~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 256 -PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred -CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 12378899999999999999999999998653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-14 Score=171.58 Aligned_cols=223 Identities=14% Similarity=0.155 Sum_probs=167.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCc----ccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcc--
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGAD----EWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAK-- 2029 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~----ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgk-- 2029 (2342)
...+++.+.++-+.||+........ +....-.+.+|... ...++|++... .+++|+.|++|.+||+....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e---g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE---GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc---ccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 3456677777888999854322211 22223356667652 23488998877 89999999999999987532
Q ss_pred -----cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC
Q 000085 2030 -----TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK 2103 (2342)
Q Consensus 2030 -----ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~ 2103 (2342)
....+.+|.+.|..++|++- ...+++++.|+.+.|||++++.
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-------------------------------- 261 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-------------------------------- 261 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--------------------------------
Confidence 24568899999999999984 5688999999999999998621
Q ss_pred ccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCC-eEEEEEecCC--cEEEEEecCCc-EEEEE
Q 000085 2104 SRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRG-RLIRRLVGVD--AHAVSLSSEGV-IMTWN 2178 (2342)
Q Consensus 2104 s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTG-klIrsL~gh~--vssLSfSpDG~-IlVwd 2178 (2342)
.++.+...+|++.|+|++|+|- +..|||||.|++|.+||+|+- +++.++.+|+ +..|.|||+.. +++..
T Consensus 262 ------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 262 ------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred ------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 1334556889999999999985 667899999999999999985 4678888875 78899999764 56666
Q ss_pred eCCCeEEEEEeC--Ccee------------eeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2179 KLQHTLSSFTLN--GVLV------------ARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2179 ssdGsI~I~dln--G~~L------------~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
..++.+.+|++. |... .-..-+|...|..+.|+|+..++++.
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 788999999985 2211 11222488889999999988887754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=166.53 Aligned_cols=308 Identities=14% Similarity=0.131 Sum_probs=205.2
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-- 2030 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl-- 2030 (2342)
.|..+..++++.++++|-||+..+ ..+.+....|.+++. +++.-.+|.+|. |+.|..|..||-.-.+.
T Consensus 253 ~F~engdviTgDS~G~i~Iw~~~~------~~~~k~~~aH~ggv~---~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 253 TFLENGDVITGDSGGNILIWSKGT------NRISKQVHAHDGGVF---SLCMLRDGTLLS-GGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred EEcCCCCEEeecCCceEEEEeCCC------ceEEeEeeecCCceE---EEEEecCccEee-cCccceEEecccccccccc
Confidence 455555677888999999998643 122333335666654 488899998777 99999999998321110
Q ss_pred --------------------------------------ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 2031 --------------------------------------LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 2031 --------------------------------------l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+..+|.+..+.++.+|+.+.++|++.|+++++|+ ..
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~--- 398 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH--- 398 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CC---
Confidence 012356667777777777777777777777777776 11
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
++.-. +--..++.|+.|+|.| .++.|...|...+.|.++.
T Consensus 399 --------------------------------------k~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 399 --------------------------------------KLEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred --------------------------------------ceeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEecccc
Confidence 11111 1234678899999999 8999999999999999996
Q ss_pred eEEEEEe-cCCcEEEEEecCCcEEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2153 RLIRRLV-GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2153 klIrsL~-gh~vssLSfSpDG~IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
..+..-. ..+..++.++|+|.+++.++.++.|++|.+. |..+......|..+|+.+.||+|++++.+-+-|...-.|
T Consensus 439 ~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 439 DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 6655433 3457899999999999999999999999985 655555544466899999999999999977644331111
Q ss_pred Cc----------ccccccCCCCCCccccccccccc---------cCCCCccCCCCeEEEEECCC---CeEEEEEecCCCC
Q 000085 2230 SY----------DNIQGLNSKQSGTEDFDLASDQS---------VDNNRFDFPSPSICFLDLHT---LKVFHVLKLGEGQ 2287 (2342)
Q Consensus 2230 i~----------d~Lw~l~~~~~~~iaFspd~~~s---------~ss~~ias~DGsIrIWDL~T---gk~L~tL~lgHs~ 2287 (2342)
.. +.-|.-.....+...|....-.. ......+...|.|++|...- ....+.+. +|+.
T Consensus 519 ~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~-ghs~ 597 (626)
T KOG2106|consen 519 KPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYG-GHSS 597 (626)
T ss_pred ccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeec-cccc
Confidence 00 00111000000000111000000 00011122578999987643 23345566 8999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2288 DITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2288 ~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
.|++++|..+..+|++.+.|.+|..|++
T Consensus 598 ~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 598 HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999999989998889999999984
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-14 Score=167.01 Aligned_cols=290 Identities=22% Similarity=0.216 Sum_probs=183.4
Q ss_pred eEEecCCCceEEEecCCCCCCCc---ccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecC--------C
Q 000085 1959 ASASPASGTFLRMFKGPGGSGAD---EWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSD--------G 2027 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~---ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~--------t 2027 (2342)
.+++++.|..||+|....+.... ...+...+ ..+.+.++++.|+|+|.+||+|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L---s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL---SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecc---cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence 68899999999999854422111 22222333 3455678889999999999999999999999765 2
Q ss_pred --------cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceee
Q 000085 2028 --------AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANA 2099 (2342)
Q Consensus 2028 --------gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~ 2099 (2342)
-.....+.+|...|..++|+||+.++++|+.|.++++||+..+..
T Consensus 105 e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--------------------------- 157 (434)
T KOG1009|consen 105 EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--------------------------- 157 (434)
T ss_pred hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee---------------------------
Confidence 112356788999999999999999999999999999999998643
Q ss_pred cCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe--------------------
Q 000085 2100 SADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV-------------------- 2159 (2342)
Q Consensus 2100 s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~-------------------- 2159 (2342)
...+.+|...|..++|.|-++++++-+.|...+++++...+.++...
T Consensus 158 -------------~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf 224 (434)
T KOG1009|consen 158 -------------LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF 224 (434)
T ss_pred -------------EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee
Confidence 23445666667777777767777766666655555554333222211
Q ss_pred -cCC----cEEEEEecCCcEEEEEeC----CCeE---EEEEeCCceeeeec--CC-CCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2160 -GVD----AHAVSLSSEGVIMTWNKL----QHTL---SSFTLNGVLVARAK--LP-LSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2160 -gh~----vssLSfSpDG~IlVwdss----dGsI---~I~dlnG~~L~s~~--~~-Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
... -+-++|+|||.+++.... .+.+ ..|...++.+.+.. .+ -..+...+.|+|--
T Consensus 225 hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy---------- 294 (434)
T KOG1009|consen 225 HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVY---------- 294 (434)
T ss_pred ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeE----------
Confidence 000 245788999998876521 1111 11222222111100 00 12233333333210
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCcc-CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD-FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia-s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
+.+..-......| ...-..+++ .....|+|||.++..++..+..-|-..|+.++|++||..|+.
T Consensus 295 ----------~elrp~~~~~~~~-----~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 295 ----------YELRPLSSEKFLF-----VLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred ----------EEecccccccccc-----ccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEE
Confidence 1111000000000 000001111 135789999999999999998889999999999999999999
Q ss_pred EeCCCcEEEEeCC
Q 000085 2304 STADKQLIVFTDP 2316 (2342)
Q Consensus 2304 GSsDGsIrVWDi~ 2316 (2342)
.+.||-..+-.+.
T Consensus 360 SS~DGyCS~vtfe 372 (434)
T KOG1009|consen 360 SSTDGFCSLVTFE 372 (434)
T ss_pred eccCCceEEEEEc
Confidence 9999987766544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.8e-15 Score=172.99 Aligned_cols=256 Identities=14% Similarity=0.219 Sum_probs=190.0
Q ss_pred ceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-ccccc
Q 000085 2031 LETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~ 2108 (2342)
+..+.||.+.|.|++=+|.. ..++|||.||.|++||+.+..+..++ ..|.+.|..+++.. ..+++++.|. +..|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcceeeee
Confidence 44578999999999999986 78999999999999999987665554 56667777777765 4444555554 45576
Q ss_pred cCC-ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCc-EEEEEeCCCeE
Q 000085 2109 IEG-PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGV-IMTWNKLQHTL 2184 (2342)
Q Consensus 2109 i~~-~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~-IlVwdssdGsI 2184 (2342)
... +.+++.+ ...+..+.-+..+..++|||. .|-|||.....+++++... .+.++.|+|--+ +++.+..++.|
T Consensus 136 ~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 136 IDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred ccCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 544 3444443 456677777777888999887 4899999988888888753 467888888765 44455588999
Q ss_pred EEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2185 SSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2185 ~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
.+|+.. +.++.... ....-+.++|+|.+-.+++|..
T Consensus 213 vLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~E----------------------------------------- 249 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANE----------------------------------------- 249 (433)
T ss_pred EEEecccCCccceee--eeccccceecCccccceeeccc-----------------------------------------
Confidence 999986 44444433 3456678999997666666642
Q ss_pred CCeEEEEECCCCe-EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC------hhhhhhhhhccccCCCc
Q 000085 2264 SPSICFLDLHTLK-VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS------LKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs------~k~LdQLLk~GWegDGL 2336 (2342)
|..++.+|++..+ ++.+.. +|...|.+++|||.|+-+++||.|.+|+||...... ++..+..+...|+.|.-
T Consensus 250 D~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred cccceehhhhhhcccchhhc-ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 5668888887753 455556 899999999999999999999999999999976654 34445556667777653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=170.14 Aligned_cols=306 Identities=12% Similarity=0.130 Sum_probs=195.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+.|+++.|.|.+|++|+.||+||||.+.+|+++.++. ..+.|.|++|+|.+.. ++..+.+..+.|-+..-|..+....
T Consensus 403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~ 481 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGP 481 (733)
T ss_pred EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcc
Confidence 5569999999999999999999999999999999876 3558999999997643 3333333346555554432221110
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS---SDLLLHSIRRGRL 2154 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D---GtIrIWDLrTGkl 2154 (2342)
. .....-.........++..|.....-....-++....|...|+.+.|+..|+++++...+ ..|.|+++..+..
T Consensus 482 t---~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s 558 (733)
T KOG0650|consen 482 T---KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS 558 (733)
T ss_pred h---hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence 0 000000000000001111111111111122355667799999999999999999988765 4689999977665
Q ss_pred EEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2155 IRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2155 IrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
..-|.. ..+..+.|+|....++... ...+++|++..+.+.....+....|..++++|.|..|+.|+.+...-...++
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 544432 3477889999988877765 4678999997655555555577899999999999999999876542111110
Q ss_pred ---ccc---ccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC---------CeEEEEEecCCCCC----eEEEE
Q 000085 2233 ---NIQ---GLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT---------LKVFHVLKLGEGQD----ITALA 2293 (2342)
Q Consensus 2233 ---~Lw---~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T---------gk~L~tL~lgHs~~----ItsLa 2293 (2342)
+.| .++......++|+..... .+.++.||++.|+.-.- .-++..+. +|... |..+.
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryPL----fas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~-gH~~~~~~gVLd~~ 712 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYPL----FASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR-GHEKTNDLGVLDTI 712 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccce----eeeecCCCcEEEEeeeeehhhhcCCceEeeeecc-CceeecccceEeec
Confidence 001 111122333344443221 12234589998875321 23455566 77644 88999
Q ss_pred EecCCCEEEEEeCCCcEEEEe
Q 000085 2294 LNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2294 fSPDG~~LaSGSsDGsIrVWD 2314 (2342)
|+|...+|+++|.||+|++|.
T Consensus 713 wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 713 WHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ccCCCceEEecCCCceEEeeC
Confidence 999999999999999999994
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-14 Score=167.72 Aligned_cols=248 Identities=16% Similarity=0.155 Sum_probs=188.7
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA 2039 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~ 2039 (2342)
+++.+.|+.+++|.... . ..+. |.. ...+...-.|++......++++|+..+.|+|||+....+.+.+.+|++
T Consensus 50 vas~~gdk~~~~~~K~g-~-~~~V--p~~---~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s 122 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDG-K-TPEV--PRV---RKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQS 122 (673)
T ss_pred EeecCCceeEEEecccC-C-CCcc--cee---eccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcc
Confidence 46677889999997433 1 1111 111 111111223444444558999999999999999998778888999999
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCcee-ecCCCc-cccccCCc---eE
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPAN-ASADKS-RRRRIEGP---IH 2114 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las-~s~D~s-~~~~i~~~---l~ 2114 (2342)
.|+|+.++..+.||++++..|.|.|..+.++....++.......+..+.+++..+.+.+ .+.++. ..|++.+. .+
T Consensus 123 tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~ 202 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH 202 (673)
T ss_pred eeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc
Confidence 99999999999999999999999999999876666655555556678888988876644 344444 45877543 34
Q ss_pred EecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2115 VLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
....|..+...|||+|. ..++++.+.|..|.+||++......++.. |....++|+++|.+++.+...|.+..|++.+.
T Consensus 203 ~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 203 ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 45679999999999996 46789999999999999998777766653 66789999999999999999999999999875
Q ss_pred eeeeec-CCCCCCeEEEEEccCC
Q 000085 2193 LVARAK-LPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2193 ~L~s~~-~~Hs~~ItsLafSPDG 2214 (2342)
...... ..|...|++++|-+.-
T Consensus 283 k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 283 KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCCceEeeecccceeEEEeeecc
Confidence 433222 2399999999998765
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-14 Score=178.99 Aligned_cols=224 Identities=11% Similarity=0.122 Sum_probs=172.5
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
...|++++..+.|-+|+...... ...+..-..+.+++++++|++... +|++|+.||+|++||+...+...++.
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~r------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIR------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred hhhheeecCCCcEEEEecCcccc------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence 34678889999999998543100 111222244667888899998765 99999999999999999999999999
Q ss_pred cCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2036 GHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2036 GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
+....|..|.|+| .+.+++++...|++++||++... .+..
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---------------------------------------r~~~ 214 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---------------------------------------RCEK 214 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccCch---------------------------------------hHHH
Confidence 9999999999999 57899999999999999998732 3445
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE--EEEEec-CCcEEEEEecCCcEEEEE---eCCCeEEEEE
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL--IRRLVG-VDAHAVSLSSEGVIMTWN---KLQHTLSSFT 2188 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl--IrsL~g-h~vssLSfSpDG~IlVwd---ssdGsI~I~d 2188 (2342)
.+..|.++|.|+.|+|++.+|||||.|+.|+|||..+++. +.++.. ..+..+.|-|+....+.. ..+..|++|+
T Consensus 215 k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 215 KLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred HhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 6789999999999999999999999999999999986543 333332 346788888888765543 2356799999
Q ss_pred eCCceeeee-cCCCCCCeEEEEEcc-CCCEEEEEeCCCC
Q 000085 2189 LNGVLVARA-KLPLSGSIGCMEISL-DGHSALIGVNSSS 2225 (2342)
Q Consensus 2189 lnG~~L~s~-~~~Hs~~ItsLafSP-DGk~LaSGS~DGs 2225 (2342)
+.-.-+... ...|...++.++|.. |-..+.+++.|+.
T Consensus 295 vrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 295 VRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred eccccccceeeeccCccccceeccCCCceeeEeecCccH
Confidence 875443332 233999999999976 4556677766655
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-12 Score=150.61 Aligned_cols=274 Identities=24% Similarity=0.372 Sum_probs=203.3
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEE-cCCCC-EEEEEEc-CCcEEEEecCC-cccc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSI-THDKE-IITGGHV-DGSIKLLTSDG-AKTL 2031 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~Vaf-SpDGk-lLASGS~-DGsIrVWDl~t-gkll 2031 (2342)
.+..+..++.++.+.+|+..... .....+..... ..+..+.+ ++++. +++..+. |+.+.+|+... ....
T Consensus 76 ~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 76 DGELLLSGSSDGTIKLWDLDNGE-----KLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI 148 (466)
T ss_pred CCcEEEEecCCCcEEEEEcCCCc-----eeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE
Confidence 44555666678889999865522 00111111111 12223444 78887 5555444 99999999998 7888
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
..+.+|...|.+++|+|++.++++++. |+++++|++..+
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 188 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---------------------------------------- 188 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----------------------------------------
Confidence 889999999999999999999999986 999999999862
Q ss_pred CceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEEE-EEecCCcE-EEEEecCCcEEEEEeCCCeEEEE
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLIR-RLVGVDAH-AVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklIr-sL~gh~vs-sLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
..+..+.+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+.+|... ...|++++..++....++.+++|
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 268 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEe
Confidence 23445566999999999999998 56666999999999999888888 67776533 44799999888888889999999
Q ss_pred EeCCce--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2188 TLNGVL--VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2188 dlnG~~--L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
+..... +... ..|...|.++.|+|++..+++++. |+
T Consensus 269 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~-----------------------------------------d~ 306 (466)
T COG2319 269 DLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSS-----------------------------------------DG 306 (466)
T ss_pred eecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeC-----------------------------------------CC
Confidence 987433 2322 458899999999999999888653 34
Q ss_pred eEEEEECCCCeEEEEEe-cCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCC
Q 000085 2266 SICFLDLHTLKVFHVLK-LGEGQDITALALNKDNTNLLVS-TADKQLIVFTDPAL 2318 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~-lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~sL 2318 (2342)
.+.+||..+........ ..|...+..+.|.+++..++.+ ..|+.+.+|+....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred cEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 58889888776555543 3677789999994343566666 68899999996655
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=173.98 Aligned_cols=245 Identities=17% Similarity=0.173 Sum_probs=171.7
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC--------cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG--------AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t--------gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
+..++..+.|.+....|++++.||+|.+|+++. -+.+.++.+|.++|.|+++.+++.+++||+.||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 444556689999999999999999999999932 145678999999999999999999999999999999998
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
+.... .|+.. .+.......+.||++.|+.+++|.....|++|+.||+++.
T Consensus 373 ~p~n~------------------dp~ds------------~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 373 LPPNQ------------------DPDDS------------YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRL 422 (577)
T ss_pred cCCCC------------------Ccccc------------cCcchhccceeccccceeeeeecccccceeeecCCceEEe
Confidence 86311 00000 0111234568999999999999999999999999999999
Q ss_pred EECCCCeEEEEEec---CC-cEEEEEecCC-cEEEEEeCCC-----------eEEEEEeCCceeeeecCCCCCCeEEEEE
Q 000085 2147 HSIRRGRLIRRLVG---VD-AHAVSLSSEG-VIMTWNKLQH-----------TLSSFTLNGVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2147 WDLrTGklIrsL~g---h~-vssLSfSpDG-~IlVwdssdG-----------sI~I~dlnG~~L~s~~~~Hs~~ItsLaf 2210 (2342)
|+...... .++.. ++ ...+.+-... .+.+.+...+ .+.++....... ......+.-+..
T Consensus 423 w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~----~~~~~~in~vVs 497 (577)
T KOG0642|consen 423 WEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG----PRRYPQINKVVS 497 (577)
T ss_pred eccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc----ccccCccceEEe
Confidence 99876655 33322 11 1223222111 1111111111 111111110000 001234455555
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+|.+.+.+++. .|+.|+++|..++++++... .|...++
T Consensus 498 ~~~~~~~~~~h-----------------------------------------ed~~Ir~~dn~~~~~l~s~~-a~~~svt 535 (577)
T KOG0642|consen 498 HPTADITFTAH-----------------------------------------EDRSIRFFDNKTGKILHSMV-AHKDSVT 535 (577)
T ss_pred cCCCCeeEecc-----------------------------------------cCCceecccccccccchhee-eccceec
Confidence 55555554432 47889999999999999988 8999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
++++.|+|.+|++|+.||.+++|...
T Consensus 536 slai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 536 SLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ceeecCCCceEEeecCCceeehhhcc
Confidence 99999999999999999999999953
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=163.82 Aligned_cols=266 Identities=13% Similarity=0.195 Sum_probs=193.0
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCc--cc--ceecccC
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGA--KT--LETASGH 2037 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tg--kl--l~tL~GH 2037 (2342)
++++..+++|+........++. |...-..+..++|+.... .+++-+.|..+++|.-... +. +..+.|
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~-------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g- 79 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYV-------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG- 79 (673)
T ss_pred eccCCceEEeecccccCccccc-------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc-
Confidence 3445578999865422222211 111111245588888775 3444456888999975432 12 222333
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
+.-.|++......|+++|+..++|+|||++.. . ....+.
T Consensus 80 -d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l---------------------------------------~hr~lk 118 (673)
T KOG4378|consen 80 -DNAFCVACASQSLYEISGGQSGCVKIWDLRAK-L---------------------------------------IHRFLK 118 (673)
T ss_pred -chHHHHhhhhcceeeeccCcCceeeehhhHHH-H---------------------------------------Hhhhcc
Confidence 24456666656699999999999999999852 2 123468
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEE-EEeCCCeEEEEEeCCce
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMT-WNKLQHTLSSFTLNGVL 2193 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlV-wdssdGsI~I~dlnG~~ 2193 (2342)
+|+..|+||.++....+|++++..|.|.|+.+.++.....|... .++.+.+++..+.++ ....+|.+++|+++|..
T Consensus 119 dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s 198 (673)
T KOG4378|consen 119 DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS 198 (673)
T ss_pred CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC
Confidence 99999999999999999999999999999999999877777543 366889999887655 44677999999999854
Q ss_pred ee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2194 VA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2194 L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
.. .....|..+...|+|+|....|++.- | .|..|.+||.
T Consensus 199 p~~~~~~~HsAP~~gicfspsne~l~vsV--G--------------------------------------~Dkki~~yD~ 238 (673)
T KOG4378|consen 199 PIFHASEAHSAPCRGICFSPSNEALLVSV--G--------------------------------------YDKKINIYDI 238 (673)
T ss_pred cccchhhhccCCcCcceecCCccceEEEe--c--------------------------------------ccceEEEeec
Confidence 33 22223999999999999877665431 1 2788999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2273 HTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.+.+....+. -..+.+.++|+++|.+|+.|+..|.|+.||.....
T Consensus 239 ~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 239 RSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9877777666 34578999999999999999999999999976653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-13 Score=165.16 Aligned_cols=344 Identities=12% Similarity=0.104 Sum_probs=231.2
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
...+|.+-.++.|-+|+... .|-....+.+ ..-+++..++|++.++ |.+.+.+|+|.-||+.+++....+..
T Consensus 37 S~~lAvsRt~g~IEiwN~~~-----~w~~~~vi~g--~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSN-----NWFLEPVIHG--PEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred CCceeeeccCCcEEEEccCC-----CceeeEEEec--CCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeEEecC
Confidence 34467778889999998654 5655554444 3345667799995555 55556799999999999999999988
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-ccCCCCCCccccccCCCCCceeecCCC-ccccccCCceE
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADK-SRRRRIEGPIH 2114 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i~~~l~ 2114 (2342)
..+.|++++.+|.+..++.|+.||.+...+...+...... .....+.+.+++|++++..++.|+.|+ ++.|+....-.
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 8999999999999999999999997777777766544433 334457789999999999999999999 66787644321
Q ss_pred Ee------c----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCC
Q 000085 2115 VL------R----GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQH 2182 (2342)
Q Consensus 2115 ~L------~----GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdG 2182 (2342)
.. . +...-|++|.|-.+ ..+++|..-|+|.+||...|.+++++..|. +.+++.++++..++.++.++
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 11 1 12335777777754 468999999999999999999999988775 67888889988999898999
Q ss_pred eEEEEEeCCcee---e-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2183 TLSSFTLNGVLV---A-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2183 sI~I~dlnG~~L---~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
.+..|...+..- . ..+..|...|.+++..++ .+++|+.|.......... .....+. ....|........+..
T Consensus 268 ~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~-~~~~~h~-~~~~~p~~~~v~~a~~ 343 (691)
T KOG2048|consen 268 KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE-FKNMDHR-QKNLFPASDRVSVAPE 343 (691)
T ss_pred ceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc-cCchhhh-ccccccccceeecCcc
Confidence 988888765421 1 222338899999999877 788777655422111110 0000000 0001111111000000
Q ss_pred C--cc-CCCCeEEEEECCCC--------eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2259 R--FD-FPSPSICFLDLHTL--------KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2259 ~--ia-s~DGsIrIWDL~Tg--------k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
. .. -.+..+.+|.+.+. ..+..+.......|.+.+.||+|++|+.++- ..+++|.
T Consensus 344 ~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~ 409 (691)
T KOG2048|consen 344 NRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYR 409 (691)
T ss_pred ceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEE
Confidence 0 00 02445556665543 1122222234567999999999998887763 3455555
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=156.32 Aligned_cols=231 Identities=15% Similarity=0.136 Sum_probs=161.9
Q ss_pred ccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2035 SGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
..|.+.|..+.+.+ .|+++++|+.||.|.|||+.+...-... .+++ +.. ..+ ..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-----------------~li~-----k~~-c~v--~~ 94 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-----------------GLIA-----KHK-CIV--AK 94 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-----------------ccee-----hee-eec--cc
Confidence 45889999999987 5899999999999999999874211000 0000 000 000 01
Q ss_pred EEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecC---CcEEEEEeCCCeEEEEE
Q 000085 2114 HVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSE---GVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpD---G~IlVwdssdGsI~I~d 2188 (2342)
..-.+|.-.|..+.|-| |..++.++|-|.+++|||..|.+....|.-.+ ++.-++||= -.+++.+.++-+|++-+
T Consensus 95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 22367899999999998 67889999999999999999998888776543 555555553 34666777778888888
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEE-EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSAL-IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~La-SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
+..........+|.+.|.++.|+|...+++ +|+.|+. .++|++... .|+.
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~------irlWDiRra-----------------------sgcf 225 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA------IRLWDIRRA-----------------------SGCF 225 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEecCCCce------EEEEEeecc-----------------------ccee
Confidence 876666666677999999999999988865 4443333 233433321 2334
Q ss_pred EEEECCCCeEEEEE--ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2268 CFLDLHTLKVFHVL--KLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL--~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++.|..+++....+ ...|.+.|++++|+.|+.++++++.|..+++|+..+.+
T Consensus 226 ~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 226 RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred EEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 44444333221111 23688899999999999999999999999999966554
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=162.01 Aligned_cols=277 Identities=14% Similarity=0.125 Sum_probs=191.4
Q ss_pred ceeEEEEEcCCCC--EEEEEEcCCcEEEEecCCcc----cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccC
Q 000085 1997 RSSAVVSITHDKE--IITGGHVDGSIKLLTSDGAK----TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1997 ~Svt~VafSpDGk--lLASGS~DGsIrVWDl~tgk----ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~t 2069 (2342)
..+++++|+|..+ ++++|..-|.|-+||+.+.+ -+..+..|..+|.++.|+|. -..+++.|.||+|++-|+++
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 3466799999875 89999999999999996332 34557789999999999995 56899999999999999998
Q ss_pred Ccccccccc-CCCCCCccccccCCCCCc-eeecCCCccccc--cC-CceEEecCCCCCeEEEEEecCC-CEEEEEeCCCc
Q 000085 2070 AFTSRTGTI-EPSSGMGTPGNSIGSSTP-ANASADKSRRRR--IE-GPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSD 2143 (2342)
Q Consensus 2070 g~~i~t~~~-~~~~~V~svs~SpDG~~L-as~s~D~s~~~~--i~-~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGt 2143 (2342)
......... ........+.++.+...+ +....+....|+ .. .....+.-|...|+.|+++|.. .+++|||.|++
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred hhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 643222211 122233444555544443 333344222232 22 3355667788999999999975 56899999999
Q ss_pred EEEEECCCCeE-----EEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeC---C--ceeeeecCCCCC------CeE
Q 000085 2144 LLLHSIRRGRL-----IRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN---G--VLVARAKLPLSG------SIG 2206 (2342)
Q Consensus 2144 IrIWDLrTGkl-----IrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dln---G--~~L~s~~~~Hs~------~It 2206 (2342)
++|||+|.-.. +.++.. +.+..+.|||+|-.++..+.+..|++|+.. . .++..+. |.. ..-
T Consensus 347 ~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~--Hn~~t~RwlT~f 424 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP--HNNRTGRWLTPF 424 (498)
T ss_pred eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee--ccCcccccccch
Confidence 99999986432 333332 348899999998889999999999999973 1 1111111 322 123
Q ss_pred EEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC
Q 000085 2207 CMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG 2286 (2342)
Q Consensus 2207 sLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs 2286 (2342)
...|.|+..++++|-. -..|-|+|-..++.+..+.....
T Consensus 425 KA~W~P~~~li~vg~~-----------------------------------------~r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 425 KAAWDPDYNLIVVGRY-----------------------------------------PRPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred hheeCCCccEEEEecc-----------------------------------------CcceeEEcCCCCEEeeeccCccc
Confidence 4578898888887731 23488999988887777653333
Q ss_pred CCeEEE-EEecCCCEEEEE-eCCCcEEEEeCC
Q 000085 2287 QDITAL-ALNKDNTNLLVS-TADKQLIVFTDP 2316 (2342)
Q Consensus 2287 ~~ItsL-afSPDG~~LaSG-SsDGsIrVWDi~ 2316 (2342)
..|.++ .|+|-+..+++| +..|.|+||...
T Consensus 464 ~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 464 STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccceeecccccceeccCCccceEEEEecC
Confidence 355554 699988745554 678999999854
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-14 Score=164.52 Aligned_cols=252 Identities=14% Similarity=0.181 Sum_probs=165.5
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCcccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPG 2088 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs 2088 (2342)
++|.|+.-|.|+|.|+.++++...+.||.+.|..+.+.|+. +++++||.|.+|++|++++..++..+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf------------ 174 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF------------ 174 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe------------
Confidence 88999999999999999999999999999999999999974 79999999999999999986543221
Q ss_pred ccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEE
Q 000085 2089 NSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSL 2168 (2342)
Q Consensus 2089 ~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSf 2168 (2342)
.-+.||.+.|.++.|+.+|.+++||+.|.++++|++...+....++ ....+
T Consensus 175 -------------------------GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE----~s~~~ 225 (385)
T KOG1034|consen 175 -------------------------GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE----LSITY 225 (385)
T ss_pred -------------------------cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh----hhccc
Confidence 1247899999999999999999999999999999997544322222 23456
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc----cccccc-------
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY----DNIQGL------- 2237 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~----d~Lw~l------- 2237 (2342)
++++...-+-.. ..++.+... .-.|...|.|+.|- |.++++-|-++.+..|.. ..+.+.
T Consensus 226 ~~~~t~~pfpt~--~~~fp~fst------~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~ 295 (385)
T KOG1034|consen 226 SPNKTTRPFPTP--KTHFPDFST------TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT 295 (385)
T ss_pred CCCCccCcCCcc--ccccccccc------cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccce
Confidence 666654322111 111222111 11177777777775 456664432222111111 000000
Q ss_pred --------CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEE--EEe-cCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2238 --------NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH--VLK-LGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2238 --------~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~--tL~-lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
.......+.|..+.. ..........|.|++||+...++.. ++. ...+..|+..+|+.||..|+..++
T Consensus 296 Ti~~~~~~~~c~iWfirf~~d~~--~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 296 TILGEFDYPMCDIWFIRFAFDPW--QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred eeeeEeccCccceEEEEEeecHH--HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence 000011111111110 0111122357999999998866522 221 022467999999999999999999
Q ss_pred CCcEEEEe
Q 000085 2307 DKQLIVFT 2314 (2342)
Q Consensus 2307 DGsIrVWD 2314 (2342)
|++|.-||
T Consensus 374 d~~Vwrwd 381 (385)
T KOG1034|consen 374 DGTVWRWD 381 (385)
T ss_pred CCcEEEEE
Confidence 99999998
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-14 Score=182.23 Aligned_cols=239 Identities=18% Similarity=0.215 Sum_probs=185.9
Q ss_pred EEEEcCCCC----EEEEEEcCCcEEEEecCC---c---ccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccC
Q 000085 2001 VVSITHDKE----IITGGHVDGSIKLLTSDG---A---KTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2001 ~VafSpDGk----lLASGS~DGsIrVWDl~t---g---kll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~t 2069 (2342)
.++|.+.|. +||+|..||.|.+||... + ..+.+...|++.|..+.|++.. +.|++|+.||.|.|||+..
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn 148 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK 148 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC
Confidence 488887776 599999999999999765 2 2456778899999999999975 5999999999999999987
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWD 2148 (2342)
.....+. . -..-.+.|.|++|+.. ...+++++.+|.+.|||
T Consensus 149 ~~tP~~~---------------~-----------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 149 PETPFTP---------------G-----------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred cCCCCCC---------------C-----------------------CCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 4211110 0 0223578999999865 56788999999999999
Q ss_pred CCCCeEEEEEecCC----cEEEEEecCCcEEEEEeC--C--CeEEEEEeCC--ceeeeecCCCCCCeEEEEEccCC-CEE
Q 000085 2149 IRRGRLIRRLVGVD----AHAVSLSSEGVIMTWNKL--Q--HTLSSFTLNG--VLVARAKLPLSGSIGCMEISLDG-HSA 2217 (2342)
Q Consensus 2149 LrTGklIrsL~gh~----vssLSfSpDG~IlVwdss--d--GsI~I~dlnG--~~L~s~~~~Hs~~ItsLafSPDG-k~L 2217 (2342)
++..+.+-.+..+. ...++|+|++...++-.. + -.|.+||+.. ..+. ....|...|.+|.|++.+ .++
T Consensus 191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k-~~~~H~~GilslsWc~~D~~ll 269 (1049)
T KOG0307|consen 191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK-ILEGHQRGILSLSWCPQDPRLL 269 (1049)
T ss_pred ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh-hhcccccceeeeccCCCCchhh
Confidence 99887776665443 568999999975554422 2 3689999752 2222 223599999999999977 566
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
++++ .|+.|.+|+.++++.+..+. ..+..+..+.|+|.
T Consensus 270 lSsg-----------------------------------------kD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 270 LSSG-----------------------------------------KDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPR 307 (1049)
T ss_pred hccc-----------------------------------------CCCCeeEecCCCceEeeecC-CCCcceeeeeecCC
Confidence 6443 27889999999999999999 67789999999998
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCCh
Q 000085 2298 NT-NLLVSTADKQLIVFTDPALSL 2320 (2342)
Q Consensus 2298 G~-~LaSGSsDGsIrVWDi~sLs~ 2320 (2342)
.. .+++.+-||.|-|+.+.+...
T Consensus 308 ~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 308 NPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred CcchhhhheeccceeeeeeecCCc
Confidence 76 677789999999999877753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-11 Score=143.43 Aligned_cols=307 Identities=22% Similarity=0.322 Sum_probs=215.3
Q ss_pred eEEecCC-CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc-CCcEEEEecCCcccceeccc
Q 000085 1959 ASASPAS-GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV-DGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1959 ~LaSsSs-D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~-DGsIrVWDl~tgkll~tL~G 2036 (2342)
.+...+. ++.+++|+... .......+..|.. .+..++|+|+++.+++++. |+.+++|+...+..+..+.+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 125 ILLASSSLDGTVKLWDLST-----PGKLIRTLEGHSE---SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred EEeccCCCCccEEEEEecC-----CCeEEEEEecCcc---cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 3444344 88999998543 0111122233333 3446999999998888875 99999999999889999999
Q ss_pred CCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC--C-
Q 000085 2037 HCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE--G- 2111 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~--~- 2111 (2342)
|...|.+++|+|++. .+++++.|++|++||...+.........+.... ...+++++..++++..++. ..|+.. .
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999999999999998 566669999999998885554442223333332 2278888866666666654 445543 2
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe--cCC--cEEEEEecCCcEEEEE-eCCCeEEE
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV--GVD--AHAVSLSSEGVIMTWN-KLQHTLSS 2186 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~--gh~--vssLSfSpDG~IlVwd-ssdGsI~I 2186 (2342)
....+.+|...|.++.|+|++..+++++.|+.+.+||..+........ .|. +..+.+.+++..++.. ..++.+.+
T Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEe
Confidence 134446889999999999998888889999999999999887766665 444 5666663332444444 46677888
Q ss_pred EEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2187 FTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
|+..... ..........+..+.+++ . ....+. ...++.
T Consensus 356 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~---------------------------------------~~~~~~ 393 (466)
T COG2319 356 WDLRTGK-PLKTLEGHSNVLSVSFSP-D-GRVVSS---------------------------------------GSTDGT 393 (466)
T ss_pred eecCCCc-eeEEecCCceEEEEEECC-C-CCEEEE---------------------------------------ecCCCc
Confidence 8876543 111111222277777777 4 333220 012678
Q ss_pred EEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+.+|+........... .+...+....+++++..+++++.++.+++|+...
T Consensus 394 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 394 VRLWDLSTGSLLRNLD-GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eEEEecccCeeeeecc-CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 9999999988777766 3327899999999999999999999999999655
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-13 Score=159.82 Aligned_cols=229 Identities=17% Similarity=0.169 Sum_probs=160.6
Q ss_pred CCCEEEEEEcCCcEEEEecCCcc---c------------------ceecccCCCCeEEEEecCC-CCEEEEEeCCCceEE
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAK---T------------------LETASGHCAPVTCLALSSD-SNFLVTGSQDTTILL 2064 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgk---l------------------l~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrV 2064 (2342)
-|+++|.|+.|..|.|||++-.. + -..-.+|++.|..++|+.+ .+.|+|||.|.||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 35699999999999999975211 0 0123479999999999875 468999999999999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCc
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSD 2143 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGt 2143 (2342)
||+.+++ +..++..|.+.|.++.|+|. ...+++||.|++
T Consensus 271 WD~~~g~----------------------------------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 271 WDVDTGK----------------------------------------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred EEcCCCC----------------------------------------cceehhhcCCceeEEEecCCCceEEEeccccce
Confidence 9999964 34455679999999999985 678899999999
Q ss_pred EEEEECCCCeE-EEEEec-CCcEEEEEecCCc-EEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCCEEE
Q 000085 2144 LLLHSIRRGRL-IRRLVG-VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2144 IrIWDLrTGkl-IrsL~g-h~vssLSfSpDG~-IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk~La 2218 (2342)
|.+.|.|.-.. -..++. .++..++|.+... .++.+..+|.++-|++. |+.+- ....|.+.|.++++++.-..++
T Consensus 311 V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw-t~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW-TLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred EEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee-EEEeccCCcceEEecCCCCcce
Confidence 99999984211 111221 2356677776554 44555677888888875 32222 2234999999999987655544
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC---CCeEEEEEe
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG---QDITALALN 2295 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs---~~ItsLafS 2295 (2342)
+.+ +.|+.|++|++..-..-.+. .|. +...|.++.
T Consensus 390 ~t~----------------------------------------s~d~~Vklw~~~~~~~~~v~--~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 390 STA----------------------------------------STDKVVKLWKFDVDSPKSVK--EHSFKLGRLHCFALD 427 (463)
T ss_pred eec----------------------------------------cccceEEEEeecCCCCcccc--cccccccceeecccC
Confidence 321 13788999998654332111 121 236677778
Q ss_pred cCCC-EEEEEeCCCcEEEEeCCCC
Q 000085 2296 KDNT-NLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2296 PDG~-~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+-. +++.||..+.++|||+-..
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEEecCccceEEEeecccC
Confidence 8764 5667888889999996444
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.1e-13 Score=156.53 Aligned_cols=198 Identities=17% Similarity=0.207 Sum_probs=152.7
Q ss_pred EEEEcCCCC--EEEEEEcCCcEEEEecCC----------------cccceecccCCCCeEEEEecCC-CCEEEEEeCCCc
Q 000085 2001 VVSITHDKE--IITGGHVDGSIKLLTSDG----------------AKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTT 2061 (2342)
Q Consensus 2001 ~VafSpDGk--lLASGS~DGsIrVWDl~t----------------gkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGT 2061 (2342)
-+..++-|+ +.++=+..|.|+||++.. .+.+.++.+|.+.=..|+|||- ...|+||..-+.
T Consensus 156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~ 235 (440)
T KOG0302|consen 156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKG 235 (440)
T ss_pred eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccc
Confidence 355555554 666667789999999742 2456788999999999999993 335888888889
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeC
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSD 2140 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~ 2140 (2342)
|++|...++.- .+. ...+.+|+..|-.++|||. ...++|||-
T Consensus 236 I~lw~~~~g~W-----------------------------------~vd--~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 236 IHLWEPSTGSW-----------------------------------KVD--QRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred eEeeeeccCce-----------------------------------eec--CccccccccchhhhccCCccCceEEeeec
Confidence 99999877421 111 1235679999999999996 568899999
Q ss_pred CCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2141 SSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
||+|+|||+|.+.... ++.. ..|.+.|+.|.|+.+-.+|++|
T Consensus 279 DgsIrIWDiRs~~~~~--------------------------~~~~------------kAh~sDVNVISWnr~~~lLasG 320 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKA--------------------------AVST------------KAHNSDVNVISWNRREPLLASG 320 (440)
T ss_pred CceEEEEEecCCCccc--------------------------eeEe------------eccCCceeeEEccCCcceeeec
Confidence 9999999998763211 1100 1178899999999988888888
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC---CeEEEEEecCCCCCeEEEEEecC
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT---LKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T---gk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
+. ||+++|||+++ ++++..++ .|..+|++|.|+|.
T Consensus 321 ~D-----------------------------------------dGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 321 GD-----------------------------------------DGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPH 358 (440)
T ss_pred CC-----------------------------------------CceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccc
Confidence 62 77899999975 67788898 89999999999995
Q ss_pred -CCEEEEEeCCCcEEEEeC
Q 000085 2298 -NTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2298 -G~~LaSGSsDGsIrVWDi 2315 (2342)
...|+++|.|..|.+||+
T Consensus 359 e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDL 377 (440)
T ss_pred cCceEEeccCCCcEEEEEe
Confidence 467889999999999994
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-13 Score=155.54 Aligned_cols=270 Identities=14% Similarity=0.114 Sum_probs=171.5
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccCCccccccc-cCC-CCCC
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFTSRTGT-IEP-SSGM 2084 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~i~t~~-~~~-~~~V 2084 (2342)
..+|+|...|+|++||..+++.++.+.+|...+..+.|.. ....+.+|+.||+|++||++.......+. ..+ +.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688889999999999999999999999999999999987 46789999999999999999865544431 122 2334
Q ss_pred ccccccCCCCCceeecCC-----CccccccCCc---e-EEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCe-
Q 000085 2085 GTPGNSIGSSTPANASAD-----KSRRRRIEGP---I-HVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGR- 2153 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D-----~s~~~~i~~~---l-~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGk- 2153 (2342)
.++...-.++.++.+..- ....|+.... + .....|.+.|++++|+|. .++|+|||.||.|.++|+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 444444345555555322 1233554322 2 234579999999999995 6789999999999999997542
Q ss_pred ---EEEEEecC-CcEEEEEecCCcEEEEE-eCCCeEEEEEeCC-ceeeeecCC-----------CCCCeEEEEEccCCCE
Q 000085 2154 ---LIRRLVGV-DAHAVSLSSEGVIMTWN-KLQHTLSSFTLNG-VLVARAKLP-----------LSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2154 ---lIrsL~gh-~vssLSfSpDG~IlVwd-ssdGsI~I~dlnG-~~L~s~~~~-----------Hs~~ItsLafSPDGk~ 2216 (2342)
++.++... .+..+.|..++.-.+|. ...+...+|+++. ........+ ....+.......++..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 23333322 36677787777433444 3446677777752 111110000 0000111111112222
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE-EC---CCCeEEEEEecCCCCCeEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL-DL---HTLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW-DL---~Tgk~L~tL~lgHs~~ItsL 2292 (2342)
.++++.++ ..+.+... |. ..++.+..+..+|..-|+++
T Consensus 281 ~~l~g~~~--------------------------------------n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i 322 (376)
T KOG1188|consen 281 CALAGTDS--------------------------------------NKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI 322 (376)
T ss_pred EEEecccc--------------------------------------CceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence 22222111 11222222 21 23445566665678889999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2293 ALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.|...+..+.|||+||.+.+|..+
T Consensus 323 ~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 323 LFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hhhcccceeeccCCCceEEEEecC
Confidence 999999999999999999999943
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=150.54 Aligned_cols=193 Identities=14% Similarity=0.202 Sum_probs=147.3
Q ss_pred eEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCC
Q 000085 2041 VTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH 2120 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs 2120 (2342)
-.|+.|++.|.+|+.|..||.|.|||+.+.. .-..+.+|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------iar~lsaH~ 65 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------IARMLSAHV 65 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc----------------------------------------hhhhhhccc
Confidence 6899999999999999999999999998842 223568899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCc--EEEEEeCCCeEEEEEeCCceeeee
Q 000085 2121 REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGV--IMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~--IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
.+|+|++||+||+.++|+|.|..|.+||+..|.+++.+.-. .+..+.+.|... .++.-... .-.+.++.. .....
T Consensus 66 ~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~-~~h~~ 143 (405)
T KOG1273|consen 66 RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSD-PKHSV 143 (405)
T ss_pred cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecC-CcEEEEecC-Cceee
Confidence 99999999999999999999999999999999999988764 467777777442 23322222 222333321 11110
Q ss_pred cC-C----CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2198 KL-P----LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2198 ~~-~----Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
.. . .+..-.+..|.+.|+++++|.. .|.+.|+|.
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGts-----------------------------------------KGkllv~~a 182 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTS-----------------------------------------KGKLLVYDA 182 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecC-----------------------------------------cceEEEEec
Confidence 00 0 1122233468888999998852 477999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2273 HTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.+.+++..+.......|..+.|+..|++|+.-+.|..|++|+..
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99999999884444789999999999999999999999999965
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=154.55 Aligned_cols=213 Identities=17% Similarity=0.267 Sum_probs=162.6
Q ss_pred eecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2032 ETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
-.+.||+++|..++|+| +.+.|+|||.|.+|+||.+..+...+ +..
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---------------------------------~lt 121 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---------------------------------DLT 121 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc---------------------------------Ccc
Confidence 35679999999999999 67889999999999999997743221 123
Q ss_pred CceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2111 GPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
.++..|.||...|.-|+|+|. .+.++|++.|.+|.+||+.+|+.+-++.... ++.++|+.||..++..+.|..|++|+
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 678899999999999999997 5678899999999999999999988888322 78999999999999999999999999
Q ss_pred eCCceeeeecCCCCC-CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2189 LNGVLVARAKLPLSG-SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~-~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
.....+......|.+ .-..+.|-.+|..+-||- +. ..+.++
T Consensus 202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf-sr-------------------------------------~seRq~ 243 (472)
T KOG0303|consen 202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF-SR-------------------------------------MSERQI 243 (472)
T ss_pred CCCCcEeeecccccCCCcceeEEeccCceeeecc-cc-------------------------------------ccccce
Confidence 974444433355654 345566777888444442 11 136778
Q ss_pred EEEECCCCe---EEEEEecCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEeCCC
Q 000085 2268 CFLDLHTLK---VFHVLKLGEGQDITALALNKDNTNLLV-STADKQLIVFTDPA 2317 (2342)
Q Consensus 2268 rIWDL~Tgk---~L~tL~lgHs~~ItsLafSPDG~~LaS-GSsDGsIrVWDi~s 2317 (2342)
-+||..+.+ .+..+. .+..|.---|.+|...++. |-.|+.|+-|.+.+
T Consensus 244 aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 244 ALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 888876643 233333 4556666667888887765 45799999998643
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-12 Score=149.02 Aligned_cols=248 Identities=12% Similarity=0.111 Sum_probs=175.0
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccC
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGH 2037 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GH 2037 (2342)
..+..++-|+.+|+|+.+.......+ .|..+ +.+++|.++ ..+++|+.||.|+++|+.++... .+..|
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~-------~~~~p---lL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth 93 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKF-------KHGAP---LLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTH 93 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhhe-------ecCCc---eeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccC
Confidence 34455568899999997762111111 12233 445788774 46778889999999999987654 45669
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-ccccccCCceEEe
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRIEGPIHVL 2116 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i~~~l~~L 2116 (2342)
..+|.|+.+++-...++|||+|++|++||.+........ .....|.++.. .|..++++..+. +..|++...-..+
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF--DQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEecccccccccc--ccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh
Confidence 999999999998899999999999999999863322222 22334554443 467777755554 4445554332222
Q ss_pred ----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----eEEEEEecC-----------CcEEEEEecCCcEEEE
Q 000085 2117 ----RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG----RLIRRLVGV-----------DAHAVSLSSEGVIMTW 2177 (2342)
Q Consensus 2117 ----~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG----klIrsL~gh-----------~vssLSfSpDG~IlVw 2177 (2342)
..-.-.+.||++-|++.=.+.+|-||.|.+=.+... .....|+.| .+..++|+|--..++.
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT 249 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT 249 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence 123456899999998888899999999998776655 223344444 2688999999889999
Q ss_pred EeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2178 NKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2178 dssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+..+|.|.+|++..+.-..........|.+++|+.||..|++|+
T Consensus 250 gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 250 GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 99999999999875433222222456799999999999999997
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=173.06 Aligned_cols=240 Identities=18% Similarity=0.203 Sum_probs=164.9
Q ss_pred cCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1994 SGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1994 ~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
++...|.|+.|...|.+|++|+.|..++||..+++.++.++.||.+.|+.++.+.+..+++++|.|..|+||.+..+
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--- 264 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG--- 264 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC---
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
.++..+.||++.|++++|+|-. +.+.||++++||.+-.-
T Consensus 265 -------------------------------------~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~ 303 (1113)
T KOG0644|consen 265 -------------------------------------APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEP 303 (1113)
T ss_pred -------------------------------------chHHHHhccccceeeeccCccc----cCCCCCceEeccccccc
Confidence 3556789999999999999844 78899999999987111
Q ss_pred EEEE---EecC---CcEEEEEecCCcEEEEEeCCCeEE-------------------------------------EEEeC
Q 000085 2154 LIRR---LVGV---DAHAVSLSSEGVIMTWNKLQHTLS-------------------------------------SFTLN 2190 (2342)
Q Consensus 2154 lIrs---L~gh---~vssLSfSpDG~IlVwdssdGsI~-------------------------------------I~dln 2190 (2342)
.+.. +... -+..+-+...|.-...+..++.-. +|++-
T Consensus 304 ~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 304 RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 0000 0000 012222223333333333333222 22221
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
...+.....+|...+..+.++|-...++ - .+..||++.||
T Consensus 384 ~g~l~H~l~ghsd~~yvLd~Hpfn~ri~-------------------------------------m---sag~dgst~iw 423 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSDEVYVLDVHPFNPRIA-------------------------------------M---SAGYDGSTIIW 423 (1113)
T ss_pred cchhhhhhcccccceeeeeecCCCcHhh-------------------------------------h---hccCCCceEee
Confidence 1111111112333333333333221111 0 12259999999
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+..|.+++.+..+|. .+..-.||+||+.++....-|.++|......
T Consensus 424 di~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 424 DIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 9999988888776765 5667799999999999989999999985433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=150.93 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=87.6
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.|.+++||..+.+-. ....-+.... .++-..+.|+.|+|...-|...+..|+++|||+.+++.+..+.
T Consensus 91 ~D~LLAT~S~D~~VKiW~lp~g~~-q~LSape~~~--g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~ 167 (1012)
T KOG1445|consen 91 ADELLATCSRDEPVKIWKLPRGHS-QKLSAPEIDV--GGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELS 167 (1012)
T ss_pred chhhhhcccCCCeeEEEecCCCcc-cccCCcceee--cCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeeccc
Confidence 567889999999999999773211 1111122111 2233457789999987744444568999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
+|.+.|.+..|+.||..|++.+.|..|+|+|.+..
T Consensus 168 ~h~d~vQSa~WseDG~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 168 GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred CCchhhhccccccCCceEeeecCCcceEEeCCccC
Confidence 99999999999999999999999999999999874
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=154.08 Aligned_cols=203 Identities=22% Similarity=0.285 Sum_probs=151.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
.+++|+.+|..+++|+.||++|||++.+...+.....|...|.++.|+|||++|+|-+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-- 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-- 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC--
Confidence 679999999999999999999999988888888888899999999999999999999999 99999999973322210
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-----CEEEEEeCCCcEEEEECCCCeE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-----GVVVSCSDSSDLLLHSIRRGRL 2154 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-----~lLaSGS~DGtIrIWDLrTGkl 2154 (2342)
+ .+....+..|.|+.|+ ..++....-+.|+.||+
T Consensus 225 --------------------------------~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~----- 263 (398)
T KOG0771|consen 225 --------------------------------P----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI----- 263 (398)
T ss_pred --------------------------------C----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEe-----
Confidence 0 1112233445555544 11222223344444442
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2155 IRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2155 IrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
-+|... ..++. .........|++++++.||++++.|+.
T Consensus 264 --------------------~~w~~~-~~l~~---------~~~~~~~~siSsl~VS~dGkf~AlGT~------------ 301 (398)
T KOG0771|consen 264 --------------------SLWSGS-NFLRL---------RKKIKRFKSISSLAVSDDGKFLALGTM------------ 301 (398)
T ss_pred --------------------eeeccc-cccch---------hhhhhccCcceeEEEcCCCcEEEEecc------------
Confidence 122211 11100 001113458999999999999999974
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
||.|.|++..+.+.++..+..|...|+.+.|+||.+++++.+.|....|..
T Consensus 302 -----------------------------dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 302 -----------------------------DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred -----------------------------CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 567999999999999999989999999999999999999999999999988
Q ss_pred CCC
Q 000085 2315 DPA 2317 (2342)
Q Consensus 2315 i~s 2317 (2342)
+..
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=146.94 Aligned_cols=271 Identities=15% Similarity=0.161 Sum_probs=177.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.+++++.|..+++ |.+|..-|.|.+|++.+.+.+..+. .|...|+.+.--|+ ..|.|-++|+++.+|++..+..+..
T Consensus 15 ~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i 92 (323)
T KOG0322|consen 15 SSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI 92 (323)
T ss_pred chheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE
Confidence 3456688877776 8889999999999999998888888 57889999998887 6789999999999999987433221
Q ss_pred cccCCCCCCccccc-----cCCCCCc----eeecCC--CccccccCCceEEe------cCCCCCeEEEEEecC-CC--EE
Q 000085 2076 GTIEPSSGMGTPGN-----SIGSSTP----ANASAD--KSRRRRIEGPIHVL------RGHHREILCCCVSSD-LG--VV 2135 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~-----SpDG~~L----as~s~D--~s~~~~i~~~l~~L------~GHs~~Vt~VafSPD-g~--lL 2135 (2342)
. .-.+..+.| .+.++.. +.-... .....+.....++. .+..+.+.|..+..+ +. ++
T Consensus 93 ~----Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 93 H----SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred e----eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence 1 111111111 1222111 111110 01111111111111 234566777775432 33 46
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEec----------CC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc---e-eeeecC
Q 000085 2136 VSCSDSSDLLLHSIRRGRLIRRLVG----------VD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV---L-VARAKL 2199 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrTGklIrsL~g----------h~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~---~-L~s~~~ 2199 (2342)
+.|.++|.|.+||+.++..+-.+.. |. +..+.+.+.-.-=+.+..+..+..|+++-. . +.....
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 7888999999999999855444432 22 333333322222223333445566665421 1 111111
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEE
Q 000085 2200 PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH 2279 (2342)
Q Consensus 2200 ~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~ 2279 (2342)
..+..|..+.+-||++.+++++. |+.|+||+.++++++.
T Consensus 249 lknpGv~gvrIRpD~KIlATAGW-----------------------------------------D~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGW-----------------------------------------DHRIRVYSWRTLNPLA 287 (323)
T ss_pred ecCCCccceEEccCCcEEeeccc-----------------------------------------CCcEEEEEeccCCchh
Confidence 13457889999999999999873 6789999999999999
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2280 VLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2280 tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
.+. -|.+.|++++|+||...+++++.|++|-+|+.
T Consensus 288 VLk-yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 VLK-YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhh-hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999 89999999999999999999999999999983
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=144.91 Aligned_cols=266 Identities=14% Similarity=0.079 Sum_probs=184.5
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcc--c--ccccceeccccCcceeEEEEE-------cCCCCEEEEEEcCCcEEEE
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADE--W--HFPRALAFASSGIRSSAVVSI-------THDKEIITGGHVDGSIKLL 2023 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~e--w--~~p~sls~hs~gI~Svt~Vaf-------SpDGklLASGS~DGsIrVW 2023 (2342)
|+|..+.+.+.|..+++|+.+....... . .++.....+-..-..+...+| .|+..++++.+.|.-|++|
T Consensus 59 PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~w 138 (406)
T KOG2919|consen 59 PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLW 138 (406)
T ss_pred CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeee
Confidence 4567777888999999999775211111 0 011111111000011222233 4777899999999999999
Q ss_pred ecCCcccceeccc--CCCC---eEEEEecCCCCEEEEEeCCCceEEEecc-CCcccccc------ccCCCCCCccccccC
Q 000085 2024 TSDGAKTLETASG--HCAP---VTCLALSSDSNFLVTGSQDTTILLWRIH-RAFTSRTG------TIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2024 Dl~tgkll~tL~G--Ht~~---VtcLAfSPDG~~LaSGS~DGTVrVWDl~-tg~~i~t~------~~~~~~~V~svs~Sp 2091 (2342)
|.-+|+...++.+ |.+. -.|++|+|||.+|+.| ...+|+|+|+. .+...... ..+..+.+.+++++|
T Consensus 139 daftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP 217 (406)
T KOG2919|consen 139 DAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSP 217 (406)
T ss_pred eccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccC
Confidence 9999998877654 5544 3589999999999875 56799999994 33221111 122345677888998
Q ss_pred CCC-CceeecCCC---ccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCC-eEEEEEecCC---
Q 000085 2092 GSS-TPANASADK---SRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRG-RLIRRLVGVD--- 2162 (2342)
Q Consensus 2092 DG~-~Las~s~D~---s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTG-klIrsL~gh~--- 2162 (2342)
... .+++++... +..++-..++..+-||.+.|+.++|+++|+.+.+|+. |-.|.+||+|.. ..+..+..|.
T Consensus 218 ~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T 297 (406)
T KOG2919|consen 218 MDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT 297 (406)
T ss_pred CCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence 554 667666543 3446667899999999999999999999999999985 778999999864 4455554442
Q ss_pred c--EEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2163 A--HAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2163 v--ssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. ......|+|.+++.+..+|.|++|++.+- .-......|+..++.++++|-=..+++++
T Consensus 298 NQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 298 NQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred cceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 2 23456789999999999999999999751 11222334889999999999977777664
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-12 Score=153.25 Aligned_cols=213 Identities=13% Similarity=0.128 Sum_probs=156.7
Q ss_pred ecCCcccceecccCCCCeEEEEecCCC--CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2024 TSDGAKTLETASGHCAPVTCLALSSDS--NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2024 Dl~tgkll~tL~GHt~~VtcLAfSPDG--~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
|+.+-.....+.-|.+.|+|++|+|.. +.+++|+.-|+|-+||+.+....
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------------------- 223 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------------------- 223 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc----------------------------
Confidence 333444556667789999999999964 57889999999999999742111
Q ss_pred CCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeE--EEEEecCC--cEEEEEecCCcEEE
Q 000085 2102 DKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRL--IRRLVGVD--AHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2102 D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGkl--IrsL~gh~--vssLSfSpDG~IlV 2176 (2342)
..-+..+..|..+|.++.|+|. ...+++.|.||+|++-|+.++.. +.++.... ...+.++.+...++
T Consensus 224 --------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl 295 (498)
T KOG4328|consen 224 --------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL 295 (498)
T ss_pred --------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE
Confidence 1224567889999999999985 57899999999999999987643 22222111 34556777777777
Q ss_pred EEeCCCeEEEEEeCCcee-eeecCCCCCCeEEEEEccCCCE-EEEEeCCCCCCCCCcccccccCCCCCCccccccccccc
Q 000085 2177 WNKLQHTLSSFTLNGVLV-ARAKLPLSGSIGCMEISLDGHS-ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQS 2254 (2342)
Q Consensus 2177 wdssdGsI~I~dlnG~~L-~s~~~~Hs~~ItsLafSPDGk~-LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s 2254 (2342)
++..-|.+.+|+.+...- .....-|...|++|+++|...+ ++|+|.
T Consensus 296 ~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~-------------------------------- 343 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL-------------------------------- 343 (498)
T ss_pred EeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc--------------------------------
Confidence 776667888888752211 1111228889999999997655 555542
Q ss_pred cCCCCccCCCCeEEEEECCCCeE-----EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2255 VDNNRFDFPSPSICFLDLHTLKV-----FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2255 ~ss~~ias~DGsIrIWDL~Tgk~-----L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
|++.+|||++.... +.++ .|...|.+..|||++-.|++.+.|..|+|||.
T Consensus 344 ---------D~T~kIWD~R~l~~K~sp~lst~--~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 344 ---------DQTAKIWDLRQLRGKASPFLSTL--PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred ---------CcceeeeehhhhcCCCCcceecc--cccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 77899999986432 3333 59999999999999888999999999999996
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=143.31 Aligned_cols=262 Identities=11% Similarity=0.127 Sum_probs=169.4
Q ss_pred EEEEEcCCcEEEEecCC-cc--cceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccC-CccccccccCCCCCCc
Q 000085 2011 ITGGHVDGSIKLLTSDG-AK--TLETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHR-AFTSRTGTIEPSSGMG 2085 (2342)
Q Consensus 2011 LASGS~DGsIrVWDl~t-gk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~t-g~~i~t~~~~~~~~V~ 2085 (2342)
.++...|+.|++|++.+ ++ .++++. +.+....++++|++++|+.++ .++.|.+|++.. +...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34446799999999964 43 445554 345678899999999987664 588999999973 2221111112233456
Q ss_pred cccccCCCCCceeecCC--CccccccC------CceEEecCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeEEE
Q 000085 2086 TPGNSIGSSTPANASAD--KSRRRRIE------GPIHVLRGHHREILCCCVSSDLGVVVS-CSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2086 svs~SpDG~~Las~s~D--~s~~~~i~------~~l~~L~GHs~~Vt~VafSPDg~lLaS-GS~DGtIrIWDLrTGklIr 2156 (2342)
.+.++|+++.+.+.... .+..++.. ..+..+.+ .....+++++|+++++++ ...++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 78899999988766532 22334332 12222222 234677889999998854 4567999999997633221
Q ss_pred -------E-EecCCcEEEEEecCCcEEEEEe-CCCeEEEEEeCC--cee---eeec-CC----CCCCeEEEEEccCCCEE
Q 000085 2157 -------R-LVGVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLNG--VLV---ARAK-LP----LSGSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2157 -------s-L~gh~vssLSfSpDG~IlVwds-sdGsI~I~dlnG--~~L---~s~~-~~----Hs~~ItsLafSPDGk~L 2217 (2342)
. ..+.....++|+|||++++... .++.+.+|+++. ..+ .... .+ +......+.++|+|+++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 1 1234467899999999775554 478999999862 111 1111 11 11233468899999999
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC----eEEEEEecCCCCCeEEEE
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL----KVFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg----k~L~tL~lgHs~~ItsLa 2293 (2342)
+++.. .++.|.+|++... +.+..+.. ......+.
T Consensus 243 yv~~~----------------------------------------~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~ 280 (330)
T PRK11028 243 YACDR----------------------------------------TASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFN 280 (330)
T ss_pred EEecC----------------------------------------CCCeEEEEEEeCCCCeEEEeEEEec--cccCCceE
Confidence 98731 1467899988542 23333331 23456899
Q ss_pred EecCCCEEEEEeC-CCcEEEEeCC
Q 000085 2294 LNKDNTNLLVSTA-DKQLIVFTDP 2316 (2342)
Q Consensus 2294 fSPDG~~LaSGSs-DGsIrVWDi~ 2316 (2342)
++|||++|+++.. +++|.+|+.+
T Consensus 281 ~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 281 IDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999998775 8999999854
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-11 Score=142.88 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=143.3
Q ss_pred eeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCc-------ccceecccCCCCeEEEEecCC-CCEEEEEeCC
Q 000085 1989 LAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGA-------KTLETASGHCAPVTCLALSSD-SNFLVTGSQD 2059 (2342)
Q Consensus 1989 ls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tg-------kll~tL~GHt~~VtcLAfSPD-G~~LaSGS~D 2059 (2342)
+.+|.+.+. -++|+|.+. .||+|+.|.+|.||++..+ +.+..|.||...|--++|+|. .+.|+|++.|
T Consensus 77 v~GHt~~vL---Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 77 VCGHTAPVL---DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred ccCcccccc---ccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345555544 488998665 8999999999999998654 345678999999999999996 5789999999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
.+|.+|++.++.. +..+. |.+.|++++|+.||.+++|.+
T Consensus 154 n~v~iWnv~tgea----------------------------------------li~l~-hpd~i~S~sfn~dGs~l~Ttc 192 (472)
T KOG0303|consen 154 NTVSIWNVGTGEA----------------------------------------LITLD-HPDMVYSMSFNRDGSLLCTTC 192 (472)
T ss_pred ceEEEEeccCCce----------------------------------------eeecC-CCCeEEEEEeccCCceeeeec
Confidence 9999999998632 22233 999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEecCC---cEEEEEecCCcEEEEEe---CCCeEEEEEeCC--ceeeeecCCCCCCeEEEEEc
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGVD---AHAVSLSSEGVIMTWNK---LQHTLSSFTLNG--VLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh~---vssLSfSpDG~IlVwds---sdGsI~I~dlnG--~~L~s~~~~Hs~~ItsLafS 2211 (2342)
.|..|+|||.++|+.+..-.+|+ ..-+.|-.+|.++..+. .+.++.+|+.+. .++....+.....|.---|.
T Consensus 193 kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD 272 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYD 272 (472)
T ss_pred ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeec
Confidence 99999999999999998876664 45667777888665553 345677887642 22222222244556556677
Q ss_pred cCCCEEEEEe
Q 000085 2212 LDGHSALIGV 2221 (2342)
Q Consensus 2212 PDGk~LaSGS 2221 (2342)
+|...+..++
T Consensus 273 ~dt~ivYl~G 282 (472)
T KOG0303|consen 273 PDTSIVYLCG 282 (472)
T ss_pred CCCCEEEEEe
Confidence 7777776654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=146.57 Aligned_cols=199 Identities=17% Similarity=0.215 Sum_probs=139.7
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcc---------cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAK---------TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgk---------ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+..+.|.++.. .+++|+.|..|++|-+..+. .+..+.+|...|+++.|+|+|..|+||+.+|.|.+|...
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 44577887776 99999999999999876432 245688999999999999999999999999999999876
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWD 2148 (2342)
.-.. . ..+. - .......| .....+.+|...|..++|+|++.++++++.|.++++||
T Consensus 96 ~~~~-~---------------~~d~---e--~~~~ke~w---~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 96 DVRI-F---------------DADT---E--ADLNKEKW---VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred CcCC-c---------------cccc---h--hhhCccce---EEEEEecccccchhhhhccCCCceeeeeeccceEEEEE
Confidence 5110 0 0000 0 00000011 23467788999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceee-------------------eecCCCCC----
Q 000085 2149 IRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA-------------------RAKLPLSG---- 2203 (2342)
Q Consensus 2149 LrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~-------------------s~~~~Hs~---- 2203 (2342)
+..|+.+..+..|. +..++|.|-+++++.-..+...+.+.++-..+. ...+-|+.
T Consensus 152 v~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlks 231 (434)
T KOG1009|consen 152 VHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKS 231 (434)
T ss_pred eccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhh
Confidence 99999999998876 567788777665554444433333332211000 00011322
Q ss_pred CeEEEEEccCCCEEEEEe
Q 000085 2204 SIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS 2221 (2342)
-...++|+|||.++++..
T Consensus 232 FFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 232 FFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred hhhhcccCCCCcEEEccc
Confidence 345678899999998774
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-11 Score=138.79 Aligned_cols=230 Identities=11% Similarity=0.099 Sum_probs=163.9
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCC-----
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDG----- 2027 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~t----- 2027 (2342)
..|++++++++|.+++||+... ....|........|.+.+- -|.|.+ -|+++|+++.|+++.||.-..
T Consensus 23 ~~GRRmAtCSsDq~vkI~d~~~--~s~~W~~Ts~Wrah~~Si~---rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~ 97 (361)
T KOG2445|consen 23 FYGRRMATCSSDQTVKIWDSTS--DSGTWSCTSSWRAHDGSIW---RVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA 97 (361)
T ss_pred ccCceeeeccCCCcEEEEeccC--CCCceEEeeeEEecCCcEE---EEEecCccccceEEEEecCCceeeeeeccccccc
Confidence 3689999999999999999533 3445665555555555543 366654 488999999999999997521
Q ss_pred -c---ccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc------cccc------ccCCCCCCccccc
Q 000085 2028 -A---KTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT------SRTG------TIEPSSGMGTPGN 2089 (2342)
Q Consensus 2028 -g---kll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~------i~t~------~~~~~~~V~svs~ 2089 (2342)
+ ....++......|+.+.|.|. |-.|++++.||++|||+.-.... .+++ ...+.....++.|
T Consensus 98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 1 123456667789999999995 78899999999999998765321 1111 1123345566777
Q ss_pred cCC---CCCceeecCC------Ccccccc------CCceEEecCCCCCeEEEEEecC----CCEEEEEeCCCcEEEEECC
Q 000085 2090 SIG---SSTPANASAD------KSRRRRI------EGPIHVLRGHHREILCCCVSSD----LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2090 SpD---G~~Las~s~D------~s~~~~i------~~~l~~L~GHs~~Vt~VafSPD----g~lLaSGS~DGtIrIWDLr 2150 (2342)
++. ...++++..+ ...++.. ...+..+.+|+++|+.++|.|+ ..+|++++.|| |+||.++
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 753 3456666655 2222222 1235667899999999999997 35799999999 9999987
Q ss_pred CC--------------------eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2151 RG--------------------RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2151 TG--------------------klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
.. +.+..+..|. +..++|.-.|.++...+.||++++|..+
T Consensus 257 ~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 257 VARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 31 1233444554 7889999999999999999999999865
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-11 Score=145.09 Aligned_cols=198 Identities=10% Similarity=0.150 Sum_probs=159.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
.+.|+|+.|+|....|++|+.|++++||.+..... ..++.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------~~lqS~~ 254 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------PKLQSIH 254 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------------------hhheeee
Confidence 46799999999999999999999999999876321 2234444
Q ss_pred CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEEE--EEecCC---cEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2118 GHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLIR--RLVGVD---AHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklIr--sL~gh~---vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
-...+|.+++|.|+|. .+++++.-..++.||+.+++..+ .+.+++ .....+|+++.+++.....|.|++.....
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 5567899999999999 89999999999999999887543 333333 56788999999999999999998887654
Q ss_pred ce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2192 VL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2192 ~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
.. +.... ..+.|..++|+.||+.|++.+ .+|.|++|
T Consensus 335 ~eli~s~K--ieG~v~~~~fsSdsk~l~~~~-----------------------------------------~~GeV~v~ 371 (514)
T KOG2055|consen 335 KELITSFK--IEGVVSDFTFSSDSKELLASG-----------------------------------------GTGEVYVW 371 (514)
T ss_pred hhhhheee--eccEEeeEEEecCCcEEEEEc-----------------------------------------CCceEEEE
Confidence 33 32222 568999999999999888664 16789999
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+++..+++.+.....-.-++++.|++|.+|++|+..|.|.|||..
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 9999999999873323344778888999999999999999999944
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-11 Score=139.79 Aligned_cols=263 Identities=13% Similarity=0.052 Sum_probs=193.3
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCc-------cc-----ceecc-cCCCCeEEEEec-------CCCCEEEEEeCCCc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGA-------KT-----LETAS-GHCAPVTCLALS-------SDSNFLVTGSQDTT 2061 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tg-------kl-----l~tL~-GHt~~VtcLAfS-------PDG~~LaSGS~DGT 2061 (2342)
+.|+|||..|.+-+.|+.+++|++... .. ..++. ...+.|...+|- |+.+++++.++|.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 789999999999999999999987421 00 11111 123457776774 67789999999999
Q ss_pred eEEEeccCCcccccc----ccCCCCCCccccccCCCCCceeecCCCccccccCCc-----eEE-----ecCCCCCeEEEE
Q 000085 2062 ILLWRIHRAFTSRTG----TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP-----IHV-----LRGHHREILCCC 2127 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~----~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~-----l~~-----L~GHs~~Vt~Va 2127 (2342)
|.+||..+++....+ ....-.+..++.|+|||..+.++....++.+++.++ +.. -.+..+.|.|++
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 999999998765544 122334567899999999999988877766655222 111 123467899999
Q ss_pred EecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeC-CCeEEEEEeCCc--eeeeecCCC
Q 000085 2128 VSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKL-QHTLSSFTLNGV--LVARAKLPL 2201 (2342)
Q Consensus 2128 fSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdss-dGsI~I~dlnG~--~L~s~~~~H 2201 (2342)
|+|- ...++.|+...++-|+.-..+..+..+-+|+ ++.++|.+||+-++.+.+ +..|..|++... ++-. ...|
T Consensus 215 ~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~-L~rh 293 (406)
T KOG2919|consen 215 FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA-LERH 293 (406)
T ss_pred ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh-hhhh
Confidence 9995 4588999999999999888889999988875 899999999997777654 467889998631 1111 1113
Q ss_pred CC-CeE--EEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeE
Q 000085 2202 SG-SIG--CMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKV 2277 (2342)
Q Consensus 2202 s~-~It--sLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~ 2277 (2342)
.+ .-. -....|+|++|++|+. ||.|++||+++ +..
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~t-----------------------------------------dG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDT-----------------------------------------DGSVRVWDLKDLGNE 332 (406)
T ss_pred ccCccceEEEecCCCCceeeccCC-----------------------------------------CccEEEEecCCCCCc
Confidence 32 222 3455688999998852 67799999998 776
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
+..+. .|...|+.++++|--..+++++..
T Consensus 333 ~sv~~-~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTG-NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccc-cccccccceecCcccceeeeccCc
Confidence 77777 788999999999998888877654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-11 Score=144.96 Aligned_cols=218 Identities=16% Similarity=0.174 Sum_probs=152.4
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceec----------------cccCcceeEEEEEcCCCC-EEEEEEcCCc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAF----------------ASSGIRSSAVVSITHDKE-IITGGHVDGS 2019 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~----------------hs~gI~Svt~VafSpDGk-lLASGS~DGs 2019 (2342)
|.++|-|+-+..|.||+..--+. .+|...-+ ..++...|..++|...-+ +||+|+.|.+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~----v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDA----VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred cceEEEeccCceeEEeccccccc----cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 55678888899999998643111 11211111 112222333455655544 9999999999
Q ss_pred EEEEecCCcccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCcee
Q 000085 2020 IKLLTSDGAKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPAN 2098 (2342)
Q Consensus 2020 IrVWDl~tgkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las 2098 (2342)
|++||+.+|++..++..|.+.|.++.|+|. ..+|++||.|++|.+.|.+...+.
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s------------------------- 322 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS------------------------- 322 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-------------------------
Confidence 999999999999999999999999999985 689999999999999999852110
Q ss_pred ecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCC-CeEEEEEecCC--cEEEEEecCC-c
Q 000085 2099 ASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRR-GRLIRRLVGVD--AHAVSLSSEG-V 2173 (2342)
Q Consensus 2099 ~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrT-GklIrsL~gh~--vssLSfSpDG-~ 2173 (2342)
...| .-.+.|-.++|.|. ...++++..||+|+-+|+|. |+++.++..|. +..++++..- .
T Consensus 323 -----~~~w----------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 323 -----GKEW----------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG 387 (463)
T ss_pred -----CceE----------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc
Confidence 0011 12466788888875 45677888999999999997 48999999885 6777777654 3
Q ss_pred EEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEE
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~La 2218 (2342)
+++.++.++.+.+|++.+......... .-+...|.++.|+-.+++
T Consensus 388 ~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~l 434 (463)
T KOG0270|consen 388 LLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTL 434 (463)
T ss_pred ceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEE
Confidence 566678889999999865322111100 123466777777655544
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-11 Score=139.81 Aligned_cols=300 Identities=13% Similarity=0.093 Sum_probs=196.2
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC------cccceeccc-CCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG------AKTLETASG-HCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t------gkll~tL~G-Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
+..|++++.|+.++++|++|+.|..++||+++. .++++.... |...|.|++|.....+|++|..+++|...|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 445677799999999999999999999999763 345554433 5589999999998999999999999999999
Q ss_pred cCCcccccc-ccCCCCCCccccccCCCCCceeecCCCc-cccccCC---c--eEEecCCCCCeEEEEEecC-CCEEEEEe
Q 000085 2068 HRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG---P--IHVLRGHHREILCCCVSSD-LGVVVSCS 2139 (2342)
Q Consensus 2068 ~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~---~--l~~L~GHs~~Vt~VafSPD-g~lLaSGS 2139 (2342)
.+.+.+... .....+.|+.+..+|..+.+++...++. ..|+... + ...+.........+-|+|. ..+|++.+
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 987655544 3344568899999998777777766654 3455421 1 2223334556778889986 56778899
Q ss_pred CCCcEEEEECCCCeE-EEE---EecC-----CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCC-------CC
Q 000085 2140 DSSDLLLHSIRRGRL-IRR---LVGV-----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPL-------SG 2203 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGkl-Irs---L~gh-----~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~H-------s~ 2203 (2342)
.-|.+-+||++..+. +.. +.+- +-..+-|+++|+.++.-.+...-..|++..+.+......| ..
T Consensus 215 ~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~ 294 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIK 294 (609)
T ss_pred ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeee
Confidence 999999999975431 111 1111 1135678999987765444444455665543322222222 24
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC-CCccccc-cccccccCCCCccCCCCeEEEEECCCCeEEEEE
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-SGTEDFD-LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVL 2281 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-~~~iaFs-pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL 2281 (2342)
.+.+++|..|.. +++|+.+-. ..+|.+.... .+.+... .+.... -..|.| .+.+.++
T Consensus 295 T~KS~~F~~D~~-v~tGSD~~~------i~~WklP~~~ds~G~~~IG~~~~~~---------~~~~~i-----~~~~~VL 353 (609)
T KOG4227|consen 295 TIKSMTFIDDYT-VATGSDHWG------IHIWKLPRANDSYGFTQIGHDEEEM---------PSEIFI-----EKELTVL 353 (609)
T ss_pred eeeeeeeeccee-eeccCcccc------eEEEecCCCccccCccccCcchhhC---------chhhee-----cceeEEE
Confidence 567778876554 777764332 3345543321 1110000 000000 001111 2235566
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2282 KLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2282 ~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
. +|..-++.|.|+|...+|++.|..+.+++|..-
T Consensus 354 r-GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 354 R-GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred e-cccccccceeecCCcceEeccchhhheeccccc
Confidence 7 999999999999999999999999999999843
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=148.09 Aligned_cols=199 Identities=18% Similarity=0.213 Sum_probs=156.4
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
.++.++.||.+.+.+ ..++....+..|.+.|.|-.|+|||.-|+|++.||.|++|.-... .+........++.+++|
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARW 153 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEE
Confidence 677778899998887 456777888999999999999999999999999999999986542 22233455678999999
Q ss_pred cCCCCCceeecCCCcccc--ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEE
Q 000085 2090 SIGSSTPANASADKSRRR--RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHA 2165 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~--~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vss 2165 (2342)
.|++..+..+..+....- .....+...+.|++-|.|+.|++..++++||+.|-..+|||- .|+.+..-.. +.++.
T Consensus 154 ~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITS 232 (737)
T KOG1524|consen 154 APNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITS 232 (737)
T ss_pred CCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceee
Confidence 999998888777755432 223445667899999999999999999999999999999996 4555544333 45899
Q ss_pred EEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2166 VSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2166 LSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
++|.||..+.+|.... ++ ...+..+.|..++||+||..+++|+..|.
T Consensus 233 va~npd~~~~v~S~nt--~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 233 VAFNPEKDYLLWSYNT--AR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred eeeccccceeeeeeee--ee-----------ecCCCccceEEEEEcCCCceeeccccCce
Confidence 9999997777776432 22 11235689999999999999998875553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-11 Score=147.71 Aligned_cols=254 Identities=16% Similarity=0.161 Sum_probs=185.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
|+|..++-+.++ .+-+|+...|.. -+++..| -..|.|++|+.||+.+|+|+.|..|.||+..- ...+
T Consensus 22 PDGsqL~lAAg~-rlliyD~ndG~l------lqtLKgH---KDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~L 88 (1081)
T KOG1538|consen 22 PDGTQLILAAGS-RLLVYDTSDGTL------LQPLKGH---KDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGIL 88 (1081)
T ss_pred CCCceEEEecCC-EEEEEeCCCccc------ccccccc---cceEEEEEEccCCceeccCCCceeEEEecccc---ccee
Confidence 556666555444 567888665322 2234444 45577899999999999999999999998642 2222
Q ss_pred -ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc--cCC
Q 000085 2035 -SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR--IEG 2111 (2342)
Q Consensus 2035 -~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~--i~~ 2111 (2342)
..|++.|.|+.|+|-.+.|+||+-. ..-+|......... ......+.+.+|..||++++.+..+++...+ .++
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 3599999999999999999999864 35578766532111 1234457788899999999999999875433 233
Q ss_pred ceEEe---cCCCCCeEEEEEecCC-----CEEEEEeCCCcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCC
Q 000085 2112 PIHVL---RGHHREILCCCVSSDL-----GVVVSCSDSSDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQ 2181 (2342)
Q Consensus 2112 ~l~~L---~GHs~~Vt~VafSPDg-----~lLaSGS~DGtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssd 2181 (2342)
+...+ -|...+|++++|+|.. ..++......++.+|.+ +|+.+..-+ +-+..+++..++|.+++.+..+
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCC
Confidence 32222 3467899999999863 46777777788888776 455544222 1345788899999999999999
Q ss_pred CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2182 HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2182 GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+.+++|.-.|-.+.+.-. .+.+|+.++..|++++++.|+.||+..
T Consensus 244 k~L~~fTR~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred CceEEEeecCeEEeeccc-cceeEEEEEEccCCceEEEEEccCeee
Confidence 999999999877665432 778999999999999999999988754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-10 Score=147.13 Aligned_cols=274 Identities=15% Similarity=0.149 Sum_probs=190.7
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCC--c--ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDG--A--KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~t--g--kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+|+++||.++++|+|..||.|.||.--. + ...+.+.-|.+.|++++|++||.+|+||++.|.+.+|.+.++. +
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--k 285 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--K 285 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--c
Confidence 57899999999999999999999996432 2 2345677899999999999999999999999999999999976 5
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccc-ccc-----CCceEEe--------cCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRI-----EGPIHVL--------RGHHREILCCCVSSDLGVVVSCSD 2140 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i-----~~~l~~L--------~GHs~~Vt~VafSPDg~lLaSGS~ 2140 (2342)
++.......+..+.++||+...+....|.... ... ...+..+ .+..+-.+.++++|..+.++-.+.
T Consensus 286 qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 286 QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 66677788899999999999988887775422 111 0011111 123455678899997778888999
Q ss_pred CCcEEEEECCCCeEEEEEecC-------------CcEEEEEecCCcEEEEEe--------CC--CeEEEEEeCCce----
Q 000085 2141 SSDLLLHSIRRGRLIRRLVGV-------------DAHAVSLSSEGVIMTWNK--------LQ--HTLSSFTLNGVL---- 2193 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~gh-------------~vssLSfSpDG~IlVwds--------sd--GsI~I~dlnG~~---- 2193 (2342)
.|.|.+||+.+...+..+.-. .++.++.+..|.+++... .+ ..++.|..++..
T Consensus 366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~ 445 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI 445 (792)
T ss_pred CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence 999999999988777665421 134555566676665431 11 246667665321
Q ss_pred -eeeecCCCCCCeEEEEEccCCC--EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2194 -VARAKLPLSGSIGCMEISLDGH--SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2194 -L~s~~~~Hs~~ItsLafSPDGk--~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
......+|...+...++.+..+ ..++++. ||.++||
T Consensus 446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~-----------------------------------------dg~~KiW 484 (792)
T KOG1963|consen 446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASV-----------------------------------------DGDFKIW 484 (792)
T ss_pred EEEEEecCCCceeEEEEEecCcccceeEEecc-----------------------------------------CCeEEEE
Confidence 2233345766666555544221 3444432 5667777
Q ss_pred ECCC----------CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2271 DLHT----------LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2271 DL~T----------gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
-+.. ..+.. +..-|..++++++|+.||. +++.+.|++|.+||..+
T Consensus 485 ~~~~~~n~~k~~s~W~c~~-i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKA-IGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEee-eeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence 6621 11222 1213788999999999995 77788899999999766
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-11 Score=147.18 Aligned_cols=232 Identities=18% Similarity=0.253 Sum_probs=159.2
Q ss_pred CCEEEEEEcCCcEEEEecCCccc------ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKT------LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkl------l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
..+|+.+..||.|.++|...... +.....|.+.|..+.|.|....||+++.|.|+++||+.+.....
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G------- 136 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG------- 136 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec-------
Confidence 34899999999999999865432 34556799999999999977889999999999999999853221
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeE------
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRL------ 2154 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGkl------ 2154 (2342)
...+.||.+.|.++||.+. ...+++|+.||.|.|||++-...
T Consensus 137 -------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 137 -------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred -------------------------------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH
Confidence 1246899999999999986 56789999999999999974320
Q ss_pred --------------E----EEE---ecCC--cEE---EEEecCCcEEEEE-eCCCeEEEEEeCCc-------eeeeecCC
Q 000085 2155 --------------I----RRL---VGVD--AHA---VSLSSEGVIMTWN-KLQHTLSSFTLNGV-------LVARAKLP 2200 (2342)
Q Consensus 2155 --------------I----rsL---~gh~--vss---LSfSpDG~IlVwd-ssdGsI~I~dlnG~-------~L~s~~~~ 2200 (2342)
. +.+ ..+. +.. +.+..|...++.. ..|+.|++||+... ......++
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~ 265 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP 265 (720)
T ss_pred hhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence 0 000 0011 111 2334455555544 44889999998531 11111111
Q ss_pred -C---CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe
Q 000085 2201 -L---SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK 2276 (2342)
Q Consensus 2201 -H---s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk 2276 (2342)
| .-.+.++.....|.+|++.+ . |++|++||+.+..
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsC---t--------------------------------------D~sIy~ynm~s~s 304 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASC---T--------------------------------------DNSIYFYNMRSLS 304 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEe---c--------------------------------------CCcEEEEeccccC
Confidence 3 34677888888888888654 2 7789999997643
Q ss_pred --EEEEEecCCCCC--eEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2277 --VFHVLKLGEGQD--ITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2277 --~L~tL~lgHs~~--ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++..+. ++-.. -..-..+||+.+|++|+.|...++|.+....
T Consensus 305 ~sP~~~~s-g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 305 ISPVAEFS-GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred cCchhhcc-CcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 222222 22110 1122468999999999999999999976654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=146.34 Aligned_cols=147 Identities=12% Similarity=0.255 Sum_probs=116.2
Q ss_pred EEecCCCceEEEecCCCCCCCccccccc-ceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccc--eecc
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPR-ALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTL--ETAS 2035 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~-sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll--~tL~ 2035 (2342)
+++|..-+-|++|...+ ..|.+.. .+.. +..+|.-++|||..+ +|++|+.||+|+|||+..+... -..+
T Consensus 227 LlsGDc~~~I~lw~~~~----g~W~vd~~Pf~g---H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPST----GSWKVDQRPFTG---HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cccCccccceEeeeecc----CceeecCccccc---cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence 34444456788888655 3566544 2223 445666699999876 9999999999999999987322 2237
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
.|...|+.|.|+.+..+|++|+.||+++|||+++-+ ...++..
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~-------------------------------------~~~pVA~ 342 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK-------------------------------------SGQPVAT 342 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc-------------------------------------CCCccee
Confidence 899999999999988899999999999999998732 1257788
Q ss_pred ecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECC
Q 000085 2116 LRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLr 2150 (2342)
++-|..+|+||.|+|. ...|++++.|..|.+||+.
T Consensus 343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9999999999999985 5678889999999999984
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-12 Score=164.37 Aligned_cols=230 Identities=14% Similarity=0.199 Sum_probs=171.5
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecc--
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETAS-- 2035 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~-- 2035 (2342)
.|++|..|+.|-+|+............-.....|.+.+.. +.|++... +||+|+.||.|.|||+..-+.-.+..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~g---LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~ 158 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLG---LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ 158 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceee---eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC
Confidence 5788999999999996542122222222334455555544 99999877 99999999999999998755444442
Q ss_pred cCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccccc-ccCCCCCCccccccCCCC-CceeecCCC----ccccc
Q 000085 2036 GHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSS-TPANASADK----SRRRR 2108 (2342)
Q Consensus 2036 GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~-~Las~s~D~----s~~~~ 2108 (2342)
.-.+.|.|++|+.. .+.|++++.+|++.|||++..+.+..+ .......+..+.|+|++. .+++.+.|. +..|+
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 24578999999875 467899999999999999987554444 222224567889999875 344444442 23465
Q ss_pred c---CCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCc-EEEEEeCC
Q 000085 2109 I---EGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQ 2181 (2342)
Q Consensus 2109 i---~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~-IlVwdssd 2181 (2342)
. ..+++++.+|...|.++.|++.+ .+++|++.|+.|.+|+.++|+.+..+...+ ...+.|+|..- ++....-+
T Consensus 239 lR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 239 LRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred ccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 4 46788999999999999999866 889999999999999999999999987644 56788888765 55566778
Q ss_pred CeEEEEEeCC
Q 000085 2182 HTLSSFTLNG 2191 (2342)
Q Consensus 2182 GsI~I~dlnG 2191 (2342)
|.|.+|.+.+
T Consensus 319 gkI~I~sl~~ 328 (1049)
T KOG0307|consen 319 GKISIYSLQG 328 (1049)
T ss_pred cceeeeeeec
Confidence 8899998865
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-12 Score=164.24 Aligned_cols=240 Identities=18% Similarity=0.225 Sum_probs=174.1
Q ss_pred cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcccc
Q 000085 2028 AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR 2107 (2342)
Q Consensus 2028 gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~ 2107 (2342)
.+.+..+.||...|.|+.|...|.+++||+.|..|+||..+++.
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~------------------------------------ 223 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR------------------------------------ 223 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh------------------------------------
Confidence 45567788999999999999999999999999999999988753
Q ss_pred ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2108 RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2108 ~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
++..+.||.+.|+.++++.+..+++++|.|..|++|-+.+|..+..+.+|+ ++.++|+|-. ....+|+++
T Consensus 224 ----~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~ 295 (1113)
T KOG0644|consen 224 ----CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCR 295 (1113)
T ss_pred ----hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceE
Confidence 334568999999999999999999999999999999999999999999987 7888887632 122334444
Q ss_pred EEEeCCceeeee----cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC--CCccccccccccccCCCC
Q 000085 2186 SFTLNGVLVARA----KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ--SGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2186 I~dlnG~~L~s~----~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~--~~~iaFspd~~~s~ss~~ 2259 (2342)
+|+..-...... ......-+.++.|..++.-++||+.++....+- +..-. ...+.|......+.....
T Consensus 296 ~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e------~~~l~~~~~~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 296 IWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE------FEQLAWRSNLLIFVTRSSDLSSIVV 369 (1113)
T ss_pred eccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch------hhHhhhhccceEEEeccccccccce
Confidence 444331111100 111345677888888888999998777633222 11100 111112111111113333
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLL-VSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~La-SGSsDGsIrVWDi~sL 2318 (2342)
++..+-.+++|++.+|...+.+. +|...+..+.++|-+..++ +++.||+..|||+-..
T Consensus 370 ~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred eeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 34457889999999999999988 9999999999999765554 8899999999996443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-10 Score=146.04 Aligned_cols=236 Identities=12% Similarity=0.021 Sum_probs=151.2
Q ss_pred CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcC---CcEEEEecCCccc--ceecccCCCC
Q 000085 1966 GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVD---GSIKLLTSDGAKT--LETASGHCAP 2040 (2342)
Q Consensus 1966 D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~D---GsIrVWDl~tgkl--l~tL~GHt~~ 2040 (2342)
+..+.+|+..+.. .+.+..+.. .+...+|||||+.|+..+.+ ..|++||+.+++. +..+.+|.
T Consensus 183 ~~~i~i~d~dg~~-------~~~lt~~~~---~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~-- 250 (429)
T PRK01742 183 PYEVRVADYDGFN-------QFIVNRSSQ---PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN-- 250 (429)
T ss_pred eEEEEEECCCCCC-------ceEeccCCC---ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc--
Confidence 3577888754311 122222332 23458999999988887654 3699999988753 33444443
Q ss_pred eEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC
Q 000085 2041 VTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH 2119 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH 2119 (2342)
.+++|+|||+.|+.++ .+|.+.||.++... .....+..|
T Consensus 251 -~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~---------------------------------------~~~~~lt~~ 290 (429)
T PRK01742 251 -GAPAFSPDGSRLAFASSKDGVLNIYVMGANG---------------------------------------GTPSQLTSG 290 (429)
T ss_pred -CceeECCCCCEEEEEEecCCcEEEEEEECCC---------------------------------------CCeEeeccC
Confidence 4689999999888764 68887777554210 112234456
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2120 HREILCCCVSSDLGVVVSCS-DSSDLLLHSIRR-GRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrT-GklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
...+.+.+|+|||+.++.++ .+|...||++.. +.....+. +.....+++|||+.+++...++ +..|++.+......
T Consensus 291 ~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~-~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l 368 (429)
T PRK01742 291 AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG-GRGYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL 368 (429)
T ss_pred CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec-CCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe
Confidence 66778899999999776554 678888887653 22223332 2224578999999888776544 55688764333222
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
...+ ...++.|+|||++++.++.++. ...+.+++. +++.
T Consensus 369 t~~~--~~~~~~~sPdG~~i~~~s~~g~--------------------------------------~~~l~~~~~-~G~~ 407 (429)
T PRK01742 369 SSTF--LDESPSISPNGIMIIYSSTQGL--------------------------------------GKVLQLVSA-DGRF 407 (429)
T ss_pred cCCC--CCCCceECCCCCEEEEEEcCCC--------------------------------------ceEEEEEEC-CCCc
Confidence 2112 3456789999999998874333 112334443 5666
Q ss_pred EEEEecCCCCCeEEEEEecC
Q 000085 2278 FHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPD 2297 (2342)
+..+. +|.+.+...+|+|-
T Consensus 408 ~~~l~-~~~g~~~~p~wsp~ 426 (429)
T PRK01742 408 KARLP-GSDGQVKFPAWSPY 426 (429)
T ss_pred eEEcc-CCCCCCCCcccCCC
Confidence 77777 77788899999984
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=147.55 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=143.2
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
+..|++||.+... .+.+..|...|.+.+|+|||+.|+.++.+ .+|.+||+.++...
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------- 241 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------- 241 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--------------------
Confidence 5789999987654 56677888899999999999999988754 36999998764210
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEE--EECCCCeEEEEEecCC--cEEEEE
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLL--HSIRRGRLIRRLVGVD--AHAVSL 2168 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrI--WDLrTGklIrsL~gh~--vssLSf 2168 (2342)
.+..+.+|. .+++|+|||+.|+.++ .+|.+.| ||+.++.. ..+..+. ....+|
T Consensus 242 ------------------~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~w 299 (429)
T PRK01742 242 ------------------VVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSW 299 (429)
T ss_pred ------------------EEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEE
Confidence 111223332 3579999999887764 6886555 56666654 3444332 567899
Q ss_pred ecCCcEEEEEe-CCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcc
Q 000085 2169 SSEGVIMTWNK-LQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTE 2245 (2342)
Q Consensus 2169 SpDG~IlVwds-sdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i 2245 (2342)
+|||+.+++.. .++...+|.++ +..... ..+.. .+..|+|||++++.++.
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~--l~~~~--~~~~~SpDG~~ia~~~~----------------------- 352 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASL--VGGRG--YSAQISADGKTLVMING----------------------- 352 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEE--ecCCC--CCccCCCCCCEEEEEcC-----------------------
Confidence 99999766654 45777777764 332222 12333 46789999999987641
Q ss_pred ccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2246 DFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2246 aFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
..+.+||+.+++...... .+ ...++.|+|||++|++++.+|.+.+|..
T Consensus 353 -------------------~~i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 353 -------------------DNVVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -------------------CCEEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 125668988887543222 22 3456889999999999999998888874
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.8e-11 Score=138.74 Aligned_cols=221 Identities=12% Similarity=0.086 Sum_probs=152.4
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCcccceec--
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETA-- 2034 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL-- 2034 (2342)
..++.++.-+.|||.+...+ ++...+..|...| +.+.+.|+. +++++++.|.+||+|++++..++..+
T Consensus 106 p~la~~G~~GvIrVid~~~~------~~~~~~~ghG~sI---Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSG------QCSKNYRGHGGSI---NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred eeEEeecceeEEEEEecchh------hhccceeccCccc---hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 34566667789999986542 2333444555444 448899987 49999999999999999999998876
Q ss_pred -ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc---------------------------ccCCCCCCcc
Q 000085 2035 -SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---------------------------TIEPSSGMGT 2086 (2342)
Q Consensus 2035 -~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---------------------------~~~~~~~V~s 2086 (2342)
.||.+.|.++.|+++|.+|+||+.|.++++|++........+ ..-|...|.+
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 569999999999999999999999999999999842211110 0012222333
Q ss_pred ccccCCCCCceeecCC-CccccccCC----------------ceEEecCCCCCeEEEEEe--cCCCEEEEEeCCCcEEEE
Q 000085 2087 PGNSIGSSTPANASAD-KSRRRRIEG----------------PIHVLRGHHREILCCCVS--SDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D-~s~~~~i~~----------------~l~~L~GHs~~Vt~VafS--PDg~lLaSGS~DGtIrIW 2147 (2342)
+.|- |.++.+.+-+ .+..|..++ .+..+.-....|+-+.|. +-+++||.|...|.|++|
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 3332 3344333332 233344311 122333344566666665 558899999999999999
Q ss_pred ECCCCeE------EEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2148 SIRRGRL------IRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2148 DLrTGkl------IrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
|++.... .....+..++..+||.||.+++....++.|..|+.
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9987654 22222344788999999999999999999888874
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-10 Score=144.99 Aligned_cols=272 Identities=16% Similarity=0.131 Sum_probs=186.4
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC---CEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS---NFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG---~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
-.||+|+++++... +..|.||...+|.++..+.+|..+++.+.+.|.. .++++++.||+|++||...+....++..
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 46899999877654 7899999999999999999999999999998854 4788999999999999999877666522
Q ss_pred CCCCCCcc--ccccCCCCCceeecCCCc-------------ccccc----CCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2079 EPSSGMGT--PGNSIGSSTPANASADKS-------------RRRRI----EGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2079 ~~~~~V~s--vs~SpDG~~Las~s~D~s-------------~~~~i----~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
.....+.. .++-.....+.....+.. ..... ......+.+|.. -.++.+++.|.+.+. .
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i-~ 178 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGI-V 178 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEE-E
Confidence 21111100 111100100101111100 00000 111122233332 456777776665444 4
Q ss_pred CCCcEEEEECCCCeEEEEE----ecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc---eeeeecCC-CCCCeEEEE
Q 000085 2140 DSSDLLLHSIRRGRLIRRL----VGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV---LVARAKLP-LSGSIGCME 2209 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL----~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~---~L~s~~~~-Hs~~ItsLa 2209 (2342)
.+..+.+|+..++...... ..|. .++.++||++++++.+..+|+|.+|.-.+. ......+. |...|++++
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~ 258 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS 258 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeE
Confidence 4567888988775511111 0132 478999999999999999999999986551 11111122 889999999
Q ss_pred EccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCe
Q 000085 2210 ISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDI 2289 (2342)
Q Consensus 2210 fSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~I 2289 (2342)
|++||.+|++||. .+.+.+|.+.+++ .+-++ .-+++|
T Consensus 259 fS~~G~~LlSGG~-----------------------------------------E~VLv~Wq~~T~~-kqfLP-RLgs~I 295 (792)
T KOG1963|consen 259 FSSDGAYLLSGGR-----------------------------------------EGVLVLWQLETGK-KQFLP-RLGSPI 295 (792)
T ss_pred EecCCceEeeccc-----------------------------------------ceEEEEEeecCCC-ccccc-ccCCee
Confidence 9999999999973 4568999999988 33344 678899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2290 TALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2290 tsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
..+.+|||+...+....|+.|.+-..+.+.
T Consensus 296 ~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 296 LHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred EEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 999999999999999999999999976654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=124.38 Aligned_cols=238 Identities=17% Similarity=0.239 Sum_probs=163.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCC---------cc-cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDG---------AK-TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~t---------gk-ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
-+++|.+++|++|..+|.|.+..+.+ |+ .+-..++|.++|..++|. ..+|++|+ ||.|+-|.++...
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhh
Confidence 57899999999999999999998753 12 334558999999999998 45777776 5999999987632
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.. ......|....+.++-...--.|+++-..|..+-++.++.|+.++.||+++
T Consensus 93 es---------------------------~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 93 ES---------------------------LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred hh---------------------------ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 10 001122444334333222345789999999888888888999999999999
Q ss_pred CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeee--------cCCC-CCCeEEEEEccCCCEEEE
Q 000085 2152 GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARA--------KLPL-SGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~--------~~~H-s~~ItsLafSPDGk~LaS 2219 (2342)
|+..+.+++|. ++++..-.....++.+..||++++|+.... .+... ..+| ...|-+++.+ ..++++
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvC 223 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVC 223 (325)
T ss_pred CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEe
Confidence 99999999997 344444222233455666677777776532 21111 1112 2346666554 557776
Q ss_pred EeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC
Q 000085 2220 GVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2220 GS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
|+ ...+.+|++++.++..+++ ..+++..+.|-.|
T Consensus 224 Gg------------------------------------------Gp~lslwhLrsse~t~vfp--ipa~v~~v~F~~d-- 257 (325)
T KOG0649|consen 224 GG------------------------------------------GPKLSLWHLRSSESTCVFP--IPARVHLVDFVDD-- 257 (325)
T ss_pred cC------------------------------------------CCceeEEeccCCCceEEEe--cccceeEeeeecc--
Confidence 64 2458899999998888887 4567888888655
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 000085 2300 NLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~s 2317 (2342)
.++++|..+.|.-|...+
T Consensus 258 ~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 258 CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eEEEeccccceeeeeecc
Confidence 478888888888887543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-09 Score=131.41 Aligned_cols=285 Identities=15% Similarity=0.173 Sum_probs=182.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEE-----eCC-----CceEEEecc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTG-----SQD-----TTILLWRIH 2068 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSG-----S~D-----GTVrVWDl~ 2068 (2342)
+...+++++|+++|.+ .+..++|++..++..+.+...- .+.++.|+|.|.+|.|= ..| ..+++|++.
T Consensus 37 ~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 5668899999998886 4778999999887644333322 78999999999998862 223 346799999
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC---ceEEecCCCCCeEEEEEecCC--CEEE-----EE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG---PIHVLRGHHREILCCCVSSDL--GVVV-----SC 2138 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~---~l~~L~GHs~~Vt~VafSPDg--~lLa-----SG 2138 (2342)
++.....+......+ ++..|+.|....+-...+....++... ..+. -|...|+.+.+||.+ ..|+ ++
T Consensus 114 t~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred cceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEEccCCC
Confidence 843322222222222 466666665544322222222222111 1111 133444444444431 1111 11
Q ss_pred eCCCcEEE---------------------------------------------------------EECCCCeEEEEEec-
Q 000085 2139 SDSSDLLL---------------------------------------------------------HSIRRGRLIRRLVG- 2160 (2342)
Q Consensus 2139 S~DGtIrI---------------------------------------------------------WDLrTGklIrsL~g- 2160 (2342)
|.-+.|+| .++....+.-.+..
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~ 270 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE 270 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence 22223333 33332222222322
Q ss_pred CCcEEEEEecCCc--EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccC
Q 000085 2161 VDAHAVSLSSEGV--IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLN 2238 (2342)
Q Consensus 2161 h~vssLSfSpDG~--IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~ 2238 (2342)
..+++++|+++|+ .++++..-.++.+|++++..+... -.++=+++-|+|.|++++.+|.++.
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL------------- 334 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNL------------- 334 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC---CCCCccceEECCCCCEEEEeecCCC-------------
Confidence 2378999999995 567777778899999999876643 3577889999999999998874332
Q ss_pred CCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEE
Q 000085 2239 SKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA------DKQLIV 2312 (2342)
Q Consensus 2239 ~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs------DGsIrV 2312 (2342)
.|.|.|||+.+.+++..+. ...-+-+.|+|||++|+|++. |+.++|
T Consensus 335 -------------------------~G~mEvwDv~n~K~i~~~~---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 335 -------------------------PGDMEVWDVPNRKLIAKFK---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred -------------------------CCceEEEeccchhhccccc---cCCceEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence 5889999999999888877 234577899999999999874 799999
Q ss_pred EeCCCC--Chhhhh-hhhhccccC
Q 000085 2313 FTDPAL--SLKVVD-QMLKLGWEG 2333 (2342)
Q Consensus 2313 WDi~sL--s~k~Ld-QLLk~GWeg 2333 (2342)
|+..+- ..+... .+++.-|.+
T Consensus 387 whytG~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 387 WHYTGSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred EEecCceeehhhhhHhHhheeeee
Confidence 996543 345556 488888874
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-09 Score=127.93 Aligned_cols=252 Identities=10% Similarity=0.082 Sum_probs=154.8
Q ss_pred EecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEE-cCCcEEEEecC-Cccc--ceeccc
Q 000085 1961 ASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGH-VDGSIKLLTSD-GAKT--LETASG 2036 (2342)
Q Consensus 1961 aSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS-~DGsIrVWDl~-tgkl--l~tL~G 2036 (2342)
++.+.++.|++|+..+. ..+.....+.. . .....++++|++++|++++ .++.|.+|+++ +++. +....
T Consensus 6 ~~~~~~~~I~~~~~~~~---g~l~~~~~~~~-~---~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHE---GALTLLQVVDV-P---GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP- 77 (330)
T ss_pred EEcCCCCCEEEEEECCC---CceeeeeEEec-C---CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-
Confidence 34456788899986431 11112222211 1 1234589999999876664 58889999987 3432 22222
Q ss_pred CCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCcccccc--ccCCCCCCccccccCCCCCceeecC--CCccccccCC
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTG--TIEPSSGMGTPGNSIGSSTPANASA--DKSRRRRIEG 2111 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~--~~~~~~~V~svs~SpDG~~Las~s~--D~s~~~~i~~ 2111 (2342)
..+....++|+|++++|++++. ++.|.+|++......... ..........+.++|+++.+.+... +.+..|++..
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 2345678999999999988774 889999999743221111 1112234566778999988854443 3334455432
Q ss_pred --ceE-------EecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCC--Ce--EEEEEecCC--------cEEEEEe
Q 000085 2112 --PIH-------VLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRR--GR--LIRRLVGVD--------AHAVSLS 2169 (2342)
Q Consensus 2112 --~l~-------~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrT--Gk--lIrsL~gh~--------vssLSfS 2169 (2342)
.+. ... .......++|+|+++++++++. +++|.+||+.. ++ .+..+.... ...+.++
T Consensus 158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 110 111 1234578999999999987776 89999999973 33 344443211 2257899
Q ss_pred cCCcEEEEEe-CCCeEEEEEeC--Cceeeeec-CCCCCCeEEEEEccCCCEEEEEe
Q 000085 2170 SEGVIMTWNK-LQHTLSSFTLN--GVLVARAK-LPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2170 pDG~IlVwds-sdGsI~I~dln--G~~L~s~~-~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
|||++++... .++.|.+|+++ +..+.... ..-......+.++|||++|+++.
T Consensus 237 pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 237 PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 9999776664 46789999984 32211111 01113456789999999999874
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-10 Score=139.83 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=134.5
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCc-------ccceec
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGA-------KTLETA 2034 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tg-------kll~tL 2034 (2342)
+++++.|-||....- -.+|+.+--.-..-..++-+.|.| |...||.++.||.|++|.+..+ .....+
T Consensus 599 ~g~gG~iai~el~~P-----GrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEP-----GRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred cCCCceEEEEEcCCC-----CCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence 455788999975431 123332211111112355678888 4559999999999999998754 234678
Q ss_pred ccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2035 SGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
.+|.+.|+.+.|+| ....|++++.|.||++||+.++. ..
T Consensus 674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~----------------------------------------~~ 713 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK----------------------------------------LY 713 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh----------------------------------------hh
Confidence 89999999999999 45789999999999999998852 23
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-EEEEEec---CCcEEEEEecCCcEEEEEeCC----CeEE
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR-LIRRLVG---VDAHAVSLSSEGVIMTWNKLQ----HTLS 2185 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk-lIrsL~g---h~vssLSfSpDG~IlVwdssd----GsI~ 2185 (2342)
..+.||++.|..++|||+|+.++|.+.||+|++|..+++. .++.-.+ ....-+.|..||++++...-+ .++.
T Consensus 714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhh
Confidence 4578999999999999999999999999999999998764 3333222 234567788899988776544 3566
Q ss_pred EEEeC
Q 000085 2186 SFTLN 2190 (2342)
Q Consensus 2186 I~dln 2190 (2342)
+|+..
T Consensus 794 ~Y~Aq 798 (1012)
T KOG1445|consen 794 MYDAQ 798 (1012)
T ss_pred hhhhh
Confidence 77643
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=133.47 Aligned_cols=227 Identities=16% Similarity=0.101 Sum_probs=168.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec-cCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK---TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI-HRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk---ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl-~tg~~ 2072 (2342)
.+++|.+|++|+..+|.+.....|.||.....+ ..+++..|...|++++|+|..+.|+||+.|..-.||.. ..+.-
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 456789999999999999999999999987654 56889999999999999999999999999999999999 44443
Q ss_pred cccc-ccCCCCCCccccccCCCCCceeecCCCccc-cccCCc------eEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2073 SRTG-TIEPSSGMGTPGNSIGSSTPANASADKSRR-RRIEGP------IHVLRGHHREILCCCVSSDLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2073 i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i~~~------l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtI 2144 (2342)
..+. .........++.|+|.++.+++++...... +..++. .++-+.+...|++++|+|++-+++.||.|+.+
T Consensus 91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~ 170 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKC 170 (361)
T ss_pred ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcce
Confidence 3343 456778889999999999999888765432 222111 12234567889999999999999999999999
Q ss_pred EEEECCC------------------CeEEEEEe--cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce--eeeecCCCC
Q 000085 2145 LLHSIRR------------------GRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--VARAKLPLS 2202 (2342)
Q Consensus 2145 rIWDLrT------------------GklIrsL~--gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--L~s~~~~Hs 2202 (2342)
+|+..-- |+++..+. +.-++.+.|+++|..+.|-..+..+.+-+..+.. +......+
T Consensus 171 rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~- 249 (361)
T KOG1523|consen 171 RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ- 249 (361)
T ss_pred eEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-
Confidence 9987420 12222221 1226789999999999999999998888776542 22222223
Q ss_pred CCeEEEEEccCCCEEEEEeCCCC
Q 000085 2203 GSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2203 ~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
-+..++.|-.+...+.+| .+|.
T Consensus 250 lP~ls~~~ise~~vv~ag-~~c~ 271 (361)
T KOG1523|consen 250 LPLLSVSWISENSVVAAG-YDCG 271 (361)
T ss_pred CCceeeEeecCCceeecC-CCCC
Confidence 567777776655544433 4443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-09 Score=134.95 Aligned_cols=216 Identities=14% Similarity=0.122 Sum_probs=148.5
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.+||.++ ...+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.++..
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---------------------- 238 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---------------------- 238 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----------------------
Confidence 4788889854 445667778889999999999999988764 46899999877421
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCeEEEEEecCC--cEEEEEe
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD--LLLHSIRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt--IrIWDLrTGklIrsL~gh~--vssLSfS 2169 (2342)
..+..+.+.+.+.+|+|||+.++ +.+.+|. |++||+.++...+ +..+. ....+|+
T Consensus 239 -------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~s 298 (435)
T PRK05137 239 -------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYS 298 (435)
T ss_pred -------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEc
Confidence 12233445667889999998765 5566665 7788998876544 43332 4568999
Q ss_pred cCCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|||+.+++... .+ .|+++++.+........ +...+....|+|||++++..+.+..
T Consensus 299 pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~--------------------- 356 (435)
T PRK05137 299 PDGSQIVFESDRSGSPQLYVMNADGSNPRRISF-GGGRYSTPVWSPRGDLIAFTKQGGG--------------------- 356 (435)
T ss_pred CCCCEEEEEECCCCCCeEEEEECCCCCeEEeec-CCCcccCeEECCCCCEEEEEEcCCC---------------------
Confidence 99998877653 33 57777777654443322 3456677899999999987652111
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC------CcEEEEeCCCC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD------KQLIVFTDPAL 2318 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD------GsIrVWDi~sL 2318 (2342)
+..|.+||+.++.. ..+. ....+....|+|||++|+..+.+ ..|.+++..+.
T Consensus 357 -----------------~~~i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 357 -----------------QFSIGVMKPDGSGE-RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred -----------------ceEEEEEECCCCce-Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 23588889866543 3333 23357788999999998865543 25777786554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.5e-09 Score=133.38 Aligned_cols=217 Identities=14% Similarity=0.105 Sum_probs=144.4
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.+||.+.... +.+..+...+.+.+|||||+.|+..+. +..+.+|++.++...
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--------------------- 236 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------- 236 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------------
Confidence 3689999876543 445557778999999999999987653 456888888764211
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEE-eCCC--cEEEEECCCCeEEEEEecC-CcEEEEEec
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSC-SDSS--DLLLHSIRRGRLIRRLVGV-DAHAVSLSS 2170 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSG-S~DG--tIrIWDLrTGklIrsL~gh-~vssLSfSp 2170 (2342)
.+..+.+| +..++|+|||+.|+.. +.+| .|++||+.+++..+....+ .....+|+|
T Consensus 237 -----------------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP 296 (429)
T PRK03629 237 -----------------QVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP 296 (429)
T ss_pred -----------------EccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC
Confidence 01112222 3457899999988754 4455 5899999988765544433 356789999
Q ss_pred CCcEEEEEeCC-Ce--EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2171 EGVIMTWNKLQ-HT--LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2171 DG~IlVwdssd-Gs--I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
||+.+++.... +. ++.+++.+....... .+.....+..|+|||++++..+.+..
T Consensus 297 DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g---------------------- 353 (429)
T PRK03629 297 DSQNLAYTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGG---------------------- 353 (429)
T ss_pred CCCEEEEEeCCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEccCC----------------------
Confidence 99988776543 44 444455554333322 13345667899999999987652211
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCc---EEEEeCCCC
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQ---LIVFTDPAL 2318 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGs---IrVWDi~sL 2318 (2342)
...|++||+.+++.. .+... .......|+|||++|+.++.|+. +.+++.++.
T Consensus 354 ----------------~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 354 ----------------QQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred ----------------CceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 245889999888743 33312 23456789999999999988775 677776544
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=140.49 Aligned_cols=291 Identities=14% Similarity=0.128 Sum_probs=206.8
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.+|+.|.|...|..|++|+.|..|.+||+..++....+ .||...|....|-|. ...+++++.||.|++=.+......
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 44556999999999999999999999999998876655 579999999999884 578999999999999877654333
Q ss_pred c-cc-ccCCCCCCccccccCCCCCc-eeecCCCccc---cccCCc---eEEecCCCC---CeEEEEEecCCC-EEEEEeC
Q 000085 2074 R-TG-TIEPSSGMGTPGNSIGSSTP-ANASADKSRR---RRIEGP---IHVLRGHHR---EILCCCVSSDLG-VVVSCSD 2140 (2342)
Q Consensus 2074 ~-t~-~~~~~~~V~svs~SpDG~~L-as~s~D~s~~---~~i~~~---l~~L~GHs~---~Vt~VafSPDg~-lLaSGS~ 2140 (2342)
. +. ...|.+.+.-++.-|+.... .+++.++... .+...+ ...-..+.. ....++..|... .+++|+.
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~ 302 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS 302 (559)
T ss_pred ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence 2 22 55677788888888876543 5555554432 222212 222223333 456788888654 7899999
Q ss_pred CCcEEEEECCCCe------EEEEEecC--------CcEEEEEecCCcEEEEEeCCCeEEEEEeC---C----------ce
Q 000085 2141 SSDLLLHSIRRGR------LIRRLVGV--------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN---G----------VL 2193 (2342)
Q Consensus 2141 DGtIrIWDLrTGk------lIrsL~gh--------~vssLSfSpDG~IlVwdssdGsI~I~dln---G----------~~ 2193 (2342)
|..+++||.+.-. .+..+..+ .+++++++.+|.-++....+-.|++|.-+ | ..
T Consensus 303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~ 382 (559)
T KOG1334|consen 303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY 382 (559)
T ss_pred hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence 9999999987532 22333221 37899999888877777788888888543 2 11
Q ss_pred eeeecCCCC--CCeEEEEE-ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2194 VARAKLPLS--GSIGCMEI-SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2194 L~s~~~~Hs--~~ItsLaf-SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
+.....+|. ..|.++-| -|...|+++|+ | -|.|.||
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS-D----------------------------------------CGhIFiW 421 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS-D----------------------------------------CGHIFIW 421 (559)
T ss_pred cchhhcccccccccceeeeccCccceEEecC-c----------------------------------------cceEEEE
Confidence 222233443 34666654 46778888776 2 3569999
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC----CChhhhhhhhhc
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA----LSLKVVDQMLKL 2329 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s----Ls~k~LdQLLk~ 2329 (2342)
+-.+++.+..+. +...-|+||.-+|--..|+++|-|..|+||...+ ...+.+++.+++
T Consensus 422 ~K~t~eii~~Me-gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~r 483 (559)
T KOG1334|consen 422 DKKTGEIIRFME-GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIKR 483 (559)
T ss_pred ecchhHHHHHhh-cccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHhh
Confidence 999999988888 5455899999999999999999999999999532 223455666653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-09 Score=134.81 Aligned_cols=214 Identities=13% Similarity=0.029 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCC--ceEEEeccCCcc
Q 000085 1999 SAVVSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDT--TILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DG--TVrVWDl~tg~~ 2072 (2342)
+...+|+|||+.|+..+.+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+ +.+.++ .|.+||+.++..
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence 3458999999988877643 469999998876533 334455566889999998775 556666 488888776421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCc--EEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSD--LLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGt--IrIWDL 2149 (2342)
..+..|.......+|+|||+.++.++. +|. |+++|+
T Consensus 285 -----------------------------------------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 285 -----------------------------------------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred -----------------------------------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 122334344567799999998877664 454 777787
Q ss_pred CCCeEEEE-EecCCcEEEEEecCCcEEEEEeCCC---eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2150 RRGRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQH---TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2150 rTGklIrs-L~gh~vssLSfSpDG~IlVwdssdG---sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.+++..+. +.+......+|||||+.+++...++ .|.+|++.+...... .+........|+|||++++..+..+.
T Consensus 324 ~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L--t~~~~~~~p~~spdG~~i~~~s~~~g 401 (433)
T PRK04922 324 SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL--TPGSLDESPSFAPNGSMVLYATREGG 401 (433)
T ss_pred CCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC--CCCCCCCCceECCCCCEEEEEEecCC
Confidence 77764432 2233345689999999888764332 588888865444332 23334567799999999987753221
Q ss_pred CCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2226 TNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2226 ~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
.+.|.++|+..+ ....+. .+.+.+...+|+|
T Consensus 402 --------------------------------------~~~L~~~~~~g~-~~~~l~-~~~g~~~~p~wsp 432 (433)
T PRK04922 402 --------------------------------------RGVLAAVSTDGR-VRQRLV-SADGEVREPAWSP 432 (433)
T ss_pred --------------------------------------ceEEEEEECCCC-ceEEcc-cCCCCCCCCccCC
Confidence 346888888543 345554 3455677777876
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.1e-09 Score=124.59 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=118.5
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceeccc---CCCCeEEEEecCCCCEEEEE-e-CCCceEEEeccCCccccccccCCC
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASG---HCAPVTCLALSSDSNFLVTG-S-QDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~G---Ht~~VtcLAfSPDG~~LaSG-S-~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
+.+.|++.-. ..|+|||+.+.+.+.++.. |...+.++++++.+.+|+-= + ..|.|.|||..+.
T Consensus 96 Nr~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl----------- 163 (391)
T KOG2110|consen 96 NRKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL----------- 163 (391)
T ss_pred ccceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-----------
Confidence 4455555543 4499999999999887753 55668788888778888863 2 3588999998773
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCeEEEEEec
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSD-LLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGt-IrIWDLrTGklIrsL~g 2160 (2342)
+++..+..|.+.+-|++|+++|.++||+|..|+ |+|+++.+|+.+..|+.
T Consensus 164 -----------------------------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 164 -----------------------------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred -----------------------------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence 345567899999999999999999999999997 68999999999999875
Q ss_pred C----CcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2161 V----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2161 h----~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
. .+..++|++|+.++...+.+++|++|.+..
T Consensus 215 G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 215 GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 3 478999999999999999999999999865
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.6e-09 Score=123.76 Aligned_cols=233 Identities=13% Similarity=0.175 Sum_probs=161.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCc--eEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT--ILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT--VrVWDl~tg~~i~t~ 2076 (2342)
+..+.|..|...|..|+.|| .++|+.+..............|.-+-|+. .++|..+.+.. +++.++.....+
T Consensus 8 i~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I--- 81 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI--- 81 (391)
T ss_pred eeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE---
Confidence 34466888899999999888 47777665332111111222355555653 45555554433 666666543111
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.. .....+|.+|.++. +.++.+=.+ .|+|||+++.+.+.
T Consensus 82 -------------------------------------Ce-~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 82 -------------------------------------CE-IFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred -------------------------------------EE-EecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeeh
Confidence 01 11245788888854 455555554 49999999999999
Q ss_pred EEecC---C--cEEEEEecCCcEEEEEe--CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2157 RLVGV---D--AHAVSLSSEGVIMTWNK--LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2157 sL~gh---~--vssLSfSpDG~IlVwds--sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
++... . ...++.+.++.++++.. ..|.|.+|+...-........|.+.+.|++|+++|.+|+|+|..|+
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT---- 196 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT---- 196 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCce----
Confidence 88653 2 34445555666888863 3589999998654333333459999999999999999999986554
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC-CCeEEEEEecCCCEEEEEeCCC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG-QDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs-~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
.|+|+.+.+|+.++.+..|-. ..|.+++|+||+++|.+.+..+
T Consensus 197 ------------------------------------VIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 197 ------------------------------------VIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred ------------------------------------EEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC
Confidence 499999999999999885433 4589999999999999999999
Q ss_pred cEEEEeCCCC
Q 000085 2309 QLIVFTDPAL 2318 (2342)
Q Consensus 2309 sIrVWDi~sL 2318 (2342)
+|.||.+..-
T Consensus 241 TVHiFKL~~~ 250 (391)
T KOG2110|consen 241 TVHIFKLEKV 250 (391)
T ss_pred eEEEEEeccc
Confidence 9999995433
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.4e-10 Score=138.03 Aligned_cols=235 Identities=14% Similarity=0.156 Sum_probs=155.7
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC------c--
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG------A-- 2028 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t------g-- 2028 (2342)
...+++++-++++++|+.........-.+...++| .++...|.|++++++++.+.+|+-||+|+.|++.. .
T Consensus 306 ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 306 EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred CCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence 34678899999999998732111111112222222 22344567799999999999999999999996531 1
Q ss_pred --ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-ccCCCCCCccccccCCCCC--ceeecCCC
Q 000085 2029 --KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSST--PANASADK 2103 (2342)
Q Consensus 2029 --kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~--Las~s~D~ 2103 (2342)
....++.||++.|+.+++|+....|++||.||||+.|+...... .++ .........++.+...-.. +++.....
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~ 463 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGY 463 (577)
T ss_pred cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccccc
Confidence 23467899999999999999999999999999999999877543 111 1111111111111100000 00000000
Q ss_pred cc--ccccCCceEEecC-------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCC
Q 000085 2104 SR--RRRIEGPIHVLRG-------HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEG 2172 (2342)
Q Consensus 2104 s~--~~~i~~~l~~L~G-------Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG 2172 (2342)
.. ...+...+..+.. ....+.-+.++|.+.+.+++..|+.|+++|..++..+.....|. ++.+++.++|
T Consensus 464 ~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng 543 (577)
T KOG0642|consen 464 TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG 543 (577)
T ss_pred ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCC
Confidence 00 0111111222211 12456778889999999999999999999999999998887764 7889999999
Q ss_pred cEEEEEeCCCeEEEEEeCCce
Q 000085 2173 VIMTWNKLQHTLSSFTLNGVL 2193 (2342)
Q Consensus 2173 ~IlVwdssdGsI~I~dlnG~~ 2193 (2342)
-+++.+..++.+.+|.+..+.
T Consensus 544 ~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ceEEeecCCceeehhhccchh
Confidence 999999999999999886543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=139.10 Aligned_cols=229 Identities=16% Similarity=0.138 Sum_probs=158.7
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCc--eeecCCCccccccC
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTP--ANASADKSRRRRIE 2110 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~L--as~s~D~s~~~~i~ 2110 (2342)
.+.||++.|.||...|.|.+|++||.||+|+||.+.++.|+.+.. ....|.+++|+|.+..- ++.........+.
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp- 471 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP- 471 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCc-
Confidence 467899999999999999999999999999999999999887762 34478888888876543 3333322111100
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEECCC------CeEEEEEecCCcEEEEEecCCcEEEEEeC
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSC----SDSSDLLLHSIRR------GRLIRRLVGVDAHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSG----S~DGtIrIWDLrT------GklIrsL~gh~vssLSfSpDG~IlVwdss 2180 (2342)
..| ..+..-+....++++ ..|+.+..|.-.. |-++..-....+..++|+..|.+++....
T Consensus 472 -----~~G-----~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 472 -----IFG-----DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred -----ccc-----chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 001 000001111222222 2355677776431 21222222345889999999999887654
Q ss_pred C---CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCC
Q 000085 2181 Q---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDN 2257 (2342)
Q Consensus 2181 d---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss 2257 (2342)
+ ..+.++.+........+....+.|.++.|+|...++++++
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT------------------------------------ 585 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT------------------------------------ 585 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe------------------------------------
Confidence 3 4677888764443333333678899999999999998886
Q ss_pred CCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2258 NRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2258 ~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
...|+|||+...+.+..+. .....|.+++++|.|..|+.|+.|+.+..||.+-
T Consensus 586 ------q~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 586 ------QRSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred ------ccceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 3569999998887777766 4556899999999999999999999999999653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.6e-09 Score=132.23 Aligned_cols=214 Identities=11% Similarity=0.025 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCEEEEEEc---CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEE-eCCC--ceEEEeccCCcc
Q 000085 1999 SAVVSITHDKEIITGGHV---DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTG-SQDT--TILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~---DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSG-S~DG--TVrVWDl~tg~~ 2072 (2342)
+...+|||||+.|+..+. +..|++|++.+|+... +....+.+..++|+|||+.|+.. +.++ .|.+||+.++..
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 456899999998876543 4579999998875432 22223334568999999988754 4455 477788766421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS-S--DLLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D-G--tIrIWDL 2149 (2342)
..+..+...+....|+|||+.|+.++.+ | .|+++|+
T Consensus 280 -----------------------------------------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 280 -----------------------------------------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred -----------------------------------------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 1122233456788999999988776654 4 4555577
Q ss_pred CCCeEEEEE-ecCCcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2150 RRGRLIRRL-VGVDAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2150 rTGklIrsL-~gh~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.++...+.. .+......+++|||+.+++.... ..+.+|++.+........ ........|+|||++++.++.++.
T Consensus 319 ~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~--~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 319 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD--TFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC--CCCCCCceECCCCCEEEEEEcCCC
Confidence 666543322 22234568899999988776433 357778876544433221 123446789999999998874433
Q ss_pred CCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2226 TNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2226 ~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
...+.++++. +.....+. +|.+.+...+|+|
T Consensus 397 --------------------------------------~~~l~~~~~~-G~~~~~l~-~~~~~~~~p~Wsp 427 (429)
T PRK03629 397 --------------------------------------GSVLNLVSTD-GRFKARLP-ATDGQVKFPAWSP 427 (429)
T ss_pred --------------------------------------ceEEEEEECC-CCCeEECc-cCCCCcCCcccCC
Confidence 2457888884 44456666 6777888899987
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=128.18 Aligned_cols=242 Identities=14% Similarity=0.170 Sum_probs=164.6
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
.+-+.+|.+.|.++.|+.++++|++|+.|..++||.+...... .+.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------------------------------k~~ 94 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------------------------------KTP 94 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh----------------------------------cCC
Confidence 4456789999999999999999999999999999999763111 112
Q ss_pred CceEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEEeCCCeEE
Q 000085 2111 GPIHVLR-GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2111 ~~l~~L~-GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
+++.... .|...|.|++|......+++|+.+|+|..+|+.+.+.+..+... .++.+..+|-.++++....++.+.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS 174 (609)
T ss_pred CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence 3443333 35689999999999999999999999999999999988877643 367888888888888888899999
Q ss_pred EEEeCCce-eeeecCC--CCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCcc----------------
Q 000085 2186 SFTLNGVL-VARAKLP--LSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTE---------------- 2245 (2342)
Q Consensus 2186 I~dlnG~~-L~s~~~~--Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i---------------- 2245 (2342)
+|++...+ ....... ......++.|+|... +|++.+..+. ..+|+...++....
T Consensus 175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G------~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG------PNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC------CCceeeccccchHHhhhccccCcccchhhh
Confidence 99986432 1111111 445778899999764 4555554444 34455555442211
Q ss_pred --ccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC-------CeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2246 --DFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ-------DITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2246 --aFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~-------~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.|++.+....+..+ -..-.+||+.+..+ .+++..|.. .+.+++|--|.. +++|+.+-.|++|.+|
T Consensus 249 ~~~~~~~G~Q~msiRR----~~~P~~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSIRR----GKCPLYFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLP 322 (609)
T ss_pred heeeCCCCCeehhhhc----cCCCEEeeeecccc-eeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecC
Confidence 22222222211111 22334567665432 333333432 467788876665 9999999999999976
Q ss_pred CC
Q 000085 2317 AL 2318 (2342)
Q Consensus 2317 sL 2318 (2342)
.-
T Consensus 323 ~~ 324 (609)
T KOG4227|consen 323 RA 324 (609)
T ss_pred CC
Confidence 43
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-09 Score=134.16 Aligned_cols=215 Identities=16% Similarity=0.140 Sum_probs=144.6
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.+||.++ ...+.+..|...|.+.+|+|||+.|+.++.+ ..|.+||+.++...
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------------------- 241 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------------------- 241 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---------------------
Confidence 4689999864 4455566778889999999999999988743 46889998764211
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCC--cEEEEECCCCeEEEEEecCC--cEEEEEe
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSS--DLLLHSIRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DG--tIrIWDLrTGklIrsL~gh~--vssLSfS 2169 (2342)
.+..+.+...++.|+|||+.++ +.+.+| .|++||+.+++..+ +..+. ....+|+
T Consensus 242 --------------------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~s 300 (433)
T PRK04922 242 --------------------LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWA 300 (433)
T ss_pred --------------------EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEEC
Confidence 1112223345678999998775 555665 59999999887544 33332 3568999
Q ss_pred cCCcEEEEEeC-CCe--EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEGVIMTWNKL-QHT--LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG~IlVwdss-dGs--I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|||+.+++... .+. ++++++.+........ +......++|+|||++++..+.++.
T Consensus 301 pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~--------------------- 358 (433)
T PRK04922 301 PDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-QGNYNARASVSPDGKKIAMVHGSGG--------------------- 358 (433)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEECCCC---------------------
Confidence 99998877653 444 5555655443333222 3334557899999999987642111
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD---KQLIVFTDPA 2317 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD---GsIrVWDi~s 2317 (2342)
...|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.+++..+
T Consensus 359 -----------------~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 359 -----------------QYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -----------------ceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 246999999888754 333 33345678999999998877653 4577787654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=131.30 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCcccc
Q 000085 1999 SAVVSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.++...
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--- 273 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG--- 273 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC---
Confidence 3458999999988877643 359999999886543 333445667899999998876 57888888888765310
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEC--CC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSI--RR 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDL--rT 2151 (2342)
+....+..|...+....|+|||+.++..+. +|...+|.+ .+
T Consensus 274 ------------------------------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 274 ------------------------------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred ------------------------------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 011223334444566789999998876554 466666654 45
Q ss_pred CeEEEE-EecCCcEEEEEecCCcEEEEEeCCC---eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2152 GRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQH---TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2152 GklIrs-L~gh~vssLSfSpDG~IlVwdssdG---sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+...+. +.+......+|||||+.+++....+ .|.+|++.+....... .........|+|||++|+.++.++.
T Consensus 318 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g-- 393 (427)
T PRK02889 318 GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGG-- 393 (427)
T ss_pred CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCC--
Confidence 543222 2222344578999999988876543 5888888754443322 2234567899999999998764332
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
...+.+.++ ++.....+. .+.+.+...+|+|-
T Consensus 394 ------------------------------------~~~l~~~~~-~g~~~~~l~-~~~g~~~~p~wsp~ 425 (427)
T PRK02889 394 ------------------------------------RSVLAAVSS-DGRIKQRLS-VQGGDVREPSWGPF 425 (427)
T ss_pred ------------------------------------CEEEEEEEC-CCCceEEee-cCCCCCCCCccCCC
Confidence 234666666 344445554 45566777788763
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.8e-09 Score=134.59 Aligned_cols=250 Identities=10% Similarity=0.017 Sum_probs=167.5
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCccc--ce----ecccCCCCeEEEEecCCC--CEEEEEeCCCceEEEecc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKT--LE----TASGHCAPVTCLALSSDS--NFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkl--l~----tL~GHt~~VtcLAfSPDG--~~LaSGS~DGTVrVWDl~ 2068 (2342)
.+.|++|+|... ++++|+.+|.|.+||+..+.. .. ....|.++|+.+.|..+- .-++|+|.||.|+.|+++
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~ 323 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD 323 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence 467799998655 899999999999999987654 22 234589999999997654 459999999999999877
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIW 2147 (2342)
.-....... .+- .......-..-...++++.|.+. -..++.|+.+|.|..-
T Consensus 324 ~l~~P~e~~-----------------~~~-----------~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 324 MLSLPVEGL-----------------LLE-----------SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred ccccchhhc-----------------ccc-----------cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 632211100 000 00000000112346788999874 5678899999998873
Q ss_pred EC---CCCe-E----EEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCE
Q 000085 2148 SI---RRGR-L----IRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2148 DL---rTGk-l----IrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
+- +.+. . +..+.. ..++.+.++|=+.-++....+-.+++|... ..........+...|++++|||..--
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 32 2222 1 111111 236788888888766666668889999865 21111111226667999999998765
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC--CeEEEEEecCCCCCeEEEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT--LKVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T--gk~L~tL~lgHs~~ItsLaf 2294 (2342)
++.... .||.|.|||+.. ..++.+.. -+....+.+.|
T Consensus 456 vF~~~d----------------------------------------~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~ 494 (555)
T KOG1587|consen 456 VFATVD----------------------------------------GDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRW 494 (555)
T ss_pred EEEEEc----------------------------------------CCCceehhhhhccccCCccccc-ccccccceeec
Confidence 554431 278899999854 45555555 34667888899
Q ss_pred ecCCCEEEEEeCCCcEEEEeCC
Q 000085 2295 NKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2295 SPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++|+.|++|...|.+.+|++.
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcC
Confidence 9999999999999999999964
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=128.57 Aligned_cols=278 Identities=14% Similarity=0.132 Sum_probs=161.7
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
.+.++|||+++.+.+.||.|.++|+.+++.+.++....+ -.++++|+||++++++. .++++.|+|..+.+.+......
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 477999999988889999999999999999988876554 57899999999998765 6899999999987766554111
Q ss_pred ------CCCCCccccccCCCCCceeecCCCcccccc--C--Cc-eEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEE
Q 000085 2080 ------PSSGMGTPGNSIGSSTPANASADKSRRRRI--E--GP-IHVLRGHHREILCCCVSSDLGVVVSC-SDSSDLLLH 2147 (2342)
Q Consensus 2080 ------~~~~V~svs~SpDG~~Las~s~D~s~~~~i--~--~~-l~~L~GHs~~Vt~VafSPDg~lLaSG-S~DGtIrIW 2147 (2342)
....+..+..++....++....+.-..|-+ . .. ...............|+|++++++.+ ..+..|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 223445566667776555555543333322 1 12 22222334456788999999987654 567799999
Q ss_pred ECCCCeEEEEEec----CCcEEEEE-ecCCcEEEEEeC-----------CCeEEEEEeC-CceeeeecCCCCCCeEEEEE
Q 000085 2148 SIRRGRLIRRLVG----VDAHAVSL-SSEGVIMTWNKL-----------QHTLSSFTLN-GVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2148 DLrTGklIrsL~g----h~vssLSf-SpDG~IlVwdss-----------dGsI~I~dln-G~~L~s~~~~Hs~~ItsLaf 2210 (2342)
|..+++.+..+.. |......+ ++..- .+|... ...+.+++.. .+.+..... .... .-+..
T Consensus 200 D~~~~k~v~~i~~g~~p~~~~~~~~php~~g-~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G~g-lFi~t 276 (369)
T PF02239_consen 200 DTKTGKLVALIDTGKKPHPGPGANFPHPGFG-PVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QGGG-LFIKT 276 (369)
T ss_dssp ETTTTEEEEEEE-SSSBEETTEEEEEETTTE-EEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS---EE-
T ss_pred eeccceEEEEeeccccccccccccccCCCcc-eEEeeccccceecccccCCccccchhhcCeEEEEEEC-CCCc-ceeec
Confidence 9999988876643 11111111 22211 122211 1111222222 122222221 2223 66777
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+|+++++.+...-+. ..++|.|+|..+.+.+.++..+-...+.
T Consensus 277 hP~s~~vwvd~~~~~-------------------------------------~~~~v~viD~~tl~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNP-------------------------------------DADTVQVIDKKTLKVVKTITPGPGKRVV 319 (369)
T ss_dssp -TT-SEEEEE-TT-S-------------------------------------SHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred CCCCccEEeeccCCC-------------------------------------CCceEEEEECcCcceeEEEeccCCCcEe
Confidence 888888886631111 1468999999999988887644445699
Q ss_pred EEEEecCCCEEEEEeC--CCcEEEEeCCCCC
Q 000085 2291 ALALNKDNTNLLVSTA--DKQLIVFTDPALS 2319 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSs--DGsIrVWDi~sLs 2319 (2342)
.+.|++||+++..+.. +|.|.|||..++.
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 9999999998776644 3469999988775
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.4e-09 Score=137.26 Aligned_cols=247 Identities=15% Similarity=0.132 Sum_probs=161.6
Q ss_pred EEEc-CCCCEEEEEEcCCcEEEEecCCc-------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 2002 VSIT-HDKEIITGGHVDGSIKLLTSDGA-------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2002 VafS-pDGklLASGS~DGsIrVWDl~tg-------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
++.+ +++.++++|+.||+|++|+...- +...++.--...|.++...+.++.+|.++.||.|++.+++.....
T Consensus 1054 ~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~ 1133 (1431)
T KOG1240|consen 1054 LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVS 1133 (1431)
T ss_pred eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccc
Confidence 4444 45589999999999999997531 222333334578999999999999999999999999998763111
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCC-EEEEEeCCCcEEEEECCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLG-VVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~-lLaSGS~DGtIrIWDLrT 2151 (2342)
+.. +.. .+ +..+.....-|.+-+|.. ++. .++.+..-+.|..||++.
T Consensus 1134 ~~~--------------------~~~----~r-------i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1134 KRV--------------------ATQ----VR-------IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred cce--------------------eee----ee-------cccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 000 000 00 000111111222333332 233 677888889999999998
Q ss_pred CeEEEEEec---CC-cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCC---CEEEEEeCC
Q 000085 2152 GRLIRRLVG---VD-AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDG---HSALIGVNS 2223 (2342)
Q Consensus 2152 GklIrsL~g---h~-vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDG---k~LaSGS~D 2223 (2342)
...+.+++. |+ ++.+++++.+.+++.+...|.+.+||+. +.++.+...++..+|..+..+|-. ...++++..
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 776666553 33 7899999999999999999999999998 555666666777888888887743 355555421
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC------------------C
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG------------------E 2285 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg------------------H 2285 (2342)
+ .+.|.+|++.+|.+-.++..+ +
T Consensus 1263 ~---------------------------------------~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~ 1303 (1431)
T KOG1240|consen 1263 S---------------------------------------NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPD 1303 (1431)
T ss_pred C---------------------------------------CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCC
Confidence 1 234555555555444444322 1
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2286 GQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.-......+..-+..+++|+.|..|+.||....
T Consensus 1304 ~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1304 SLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccceeeecccCCceeeecCCccceeeccCCCc
Confidence 111223334445568999999999999996543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=134.66 Aligned_cols=133 Identities=16% Similarity=0.218 Sum_probs=106.7
Q ss_pred cceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecC--CCCEEEEEeCCCceE
Q 000085 1987 RALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSS--DSNFLVTGSQDTTIL 2063 (2342)
Q Consensus 1987 ~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSP--DG~~LaSGS~DGTVr 2063 (2342)
..+.+|. .+|+|+.|+.+|.+|++|+.|-.+.|||.-..+++..+ .||+..|.|+.|-| +.+.++||+.|..|+
T Consensus 44 ~eL~GH~---GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHT---GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhcccc---ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3444444 56777999999999999999999999999887877765 58999999999998 467899999999999
Q ss_pred EEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCC
Q 000085 2064 LWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSS 2142 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DG 2142 (2342)
++|+...+... .| -....+...+..|...|..++..|++ ..+.+++.||
T Consensus 121 lfdl~~~~~~~--------------------------~d----~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 121 LFDLDSSKEGG--------------------------MD----HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred EEecccccccc--------------------------cc----cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 99998632110 00 01123445567899999999999988 7889999999
Q ss_pred cEEEEECCCC
Q 000085 2143 DLLLHSIRRG 2152 (2342)
Q Consensus 2143 tIrIWDLrTG 2152 (2342)
+|+-+|++..
T Consensus 171 tirQyDiREp 180 (758)
T KOG1310|consen 171 TIRQYDIREP 180 (758)
T ss_pred ceeeecccCC
Confidence 9999999753
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-09 Score=123.30 Aligned_cols=268 Identities=15% Similarity=0.114 Sum_probs=167.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-CCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-HCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-Ht~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
..++|++.-.-++++..|-+|++|+-.+ ++...++. ....|+|++|-|.+. .|+.|+. +-|.+|...........
T Consensus 102 r~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~- 178 (445)
T KOG2139|consen 102 RGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN- 178 (445)
T ss_pred eeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc-
Confidence 4488998777788999999999999776 44444442 346799999999754 5555554 56889987652111000
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIr 2156 (2342)
+... + .....+....|| ..|+++.|.+||..+++++- |..|.|||..+|..+.
T Consensus 179 ------~~~~------------s-------~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 179 ------IRMM------------S-------THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred ------cccc------------c-------ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc
Confidence 0000 0 001123344567 78999999999999999884 6789999999988765
Q ss_pred EE--ecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2157 RL--VGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2157 sL--~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
-. ...+...+.|||||.+++...-++..++|..+...-...-.-..+.|...+|+|+|.+|+.... ++ ..+
T Consensus 233 L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gs------p~l 305 (445)
T KOG2139|consen 233 LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GS------PRL 305 (445)
T ss_pred ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CC------ceE
Confidence 44 3345789999999999999999999999966532222211224569999999999999886652 22 111
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC------
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK------ 2308 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG------ 2308 (2342)
+. +.|......... ....-...-+-|+..-....- ..-..+++.+++|.|.|.+|++.-..+
T Consensus 306 ys--------l~f~~~~~~~~~---~~~~k~~lliaDL~e~ti~ag-~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 306 YS--------LTFDGEDSVFLR---PQSIKRVLLIADLQEVTICAG-QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EE--------EeecCCCccccC---cccceeeeeeccchhhhhhcC-cccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 22 222211111100 000012233334321110000 001356789999999999999875433
Q ss_pred --cEEEEeC
Q 000085 2309 --QLIVFTD 2315 (2342)
Q Consensus 2309 --sIrVWDi 2315 (2342)
.|.+||.
T Consensus 374 k~~i~~fdt 382 (445)
T KOG2139|consen 374 KLHISRFDT 382 (445)
T ss_pred hhhhhhhcc
Confidence 3566764
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=133.11 Aligned_cols=261 Identities=16% Similarity=0.114 Sum_probs=158.5
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC--CCCCCcccccc----CCCCCceeecCCCccc--c
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE--PSSGMGTPGNS----IGSSTPANASADKSRR--R 2107 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~--~~~~V~svs~S----pDG~~Las~s~D~s~~--~ 2107 (2342)
.|...|+|+.|+.+...+.+++.+..+.-||+.+.......... .+....-...+ .....++.++.|+... -
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 57788899999987766666555555555555543211110000 00000000000 1122344444444321 1
Q ss_pred ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCCCeEE
Q 000085 2108 RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2108 ~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
...+....+..|.+.|.|-.|+|||.-++|++.||.|++|. ++|.+..++. +..+++++|.|+..-+++.. .+.+.
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~ 169 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHIS 169 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEE
Confidence 22344456678999999999999999999999999999998 4665544443 24589999999988777764 34444
Q ss_pred EEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2186 SFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2186 I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
+-.+ +.+.+.- ..|++-|.++.|++....+++|+.|+. -++|+-.+........+-....+.+. ..
T Consensus 170 IKpL~~n~k~i~W--kAHDGiiL~~~W~~~s~lI~sgGED~k------fKvWD~~G~~Lf~S~~~ey~ITSva~----np 237 (737)
T KOG1524|consen 170 IKPLAANSKIIRW--RAHDGLVLSLSWSTQSNIIASGGEDFR------FKIWDAQGANLFTSAAEEYAITSVAF----NP 237 (737)
T ss_pred EeecccccceeEE--eccCcEEEEeecCccccceeecCCcee------EEeecccCcccccCChhccceeeeee----cc
Confidence 4333 3434332 239999999999999999999998877 34455433221110000011111111 12
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
|.-..+|..++.+ +.....+.|..++||+||+.+++|+..|.+.+=.
T Consensus 238 d~~~~v~S~nt~R----~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 238 EKDYLLWSYNTAR----FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ccceeeeeeeeee----ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 4445566665544 3324567899999999999999999999887644
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-08 Score=127.75 Aligned_cols=179 Identities=14% Similarity=0.031 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCEEEEEEc---CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCc--eEEEeccCCcc
Q 000085 1999 SAVVSITHDKEIITGGHV---DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTT--ILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~---DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGT--VrVWDl~tg~~ 2072 (2342)
+...+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.++.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~- 281 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT- 281 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-
Confidence 456899999998887663 468999999887653 4556677788999999998765 6666766 5555665531
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDL 2149 (2342)
...+..|....+..+|+|||+.++..+. +| .|+++|+
T Consensus 282 ----------------------------------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 282 ----------------------------------------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred ----------------------------------------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 1123334445567899999998887664 33 6888898
Q ss_pred CCCeEEEEEec-CCcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2150 RRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2150 rTGklIrsL~g-h~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.++...+.... .......|+|||+.+++...+ ..+.++++.+....... ....+..+.|+|||+.|+..+
T Consensus 322 ~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 322 DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT--SGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc--CCCCCCCCeECCCCCEEEEEE
Confidence 77655433222 224557899999988876543 25777777654433222 333577889999999998765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-09 Score=135.74 Aligned_cols=259 Identities=15% Similarity=0.181 Sum_probs=173.7
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEec-CCc----
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTS-DGA---- 2028 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl-~tg---- 2028 (2342)
-...++++.+...|++|+-..+.....+. .+......|+.+.+-. |..++.+|+.||.||||+- .++
T Consensus 1075 f~p~i~~ad~r~~i~vwd~e~~~~l~~F~------n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEKGRLLNGFD------NGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred CCceeEEcCCcceEEEEecccCceecccc------CCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence 34556666656789999865533222211 1112223344455544 3348999999999999963 222
Q ss_pred cccee---cccC----CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeec
Q 000085 2029 KTLET---ASGH----CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANAS 2100 (2342)
Q Consensus 2029 kll~t---L~GH----t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s 2100 (2342)
+.+.. +.++ .+.=.-+.|.....+|++++.-..|+|||.......+....+....+++++.+. .|+.+++|.
T Consensus 1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence 22221 2221 121134567776667777777899999999987776666555666666666554 467889999
Q ss_pred CCCccc-ccc-----CCceEEecCCCCC--eEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEE--EEEe-----cCCcE
Q 000085 2101 ADKSRR-RRI-----EGPIHVLRGHHRE--ILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLI--RRLV-----GVDAH 2164 (2342)
Q Consensus 2101 ~D~s~~-~~i-----~~~l~~L~GHs~~--Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklI--rsL~-----gh~vs 2164 (2342)
.|+..+ ++. ...+...+.|... |..+.+.+.|- .+++|+.||.|++||++..... -++. |...+
T Consensus 1229 aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce
Confidence 998755 222 2357788889887 99999988654 4999999999999999874221 1222 22367
Q ss_pred EEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC------CCCCeEEEEEccCCCEEEEEe
Q 000085 2165 AVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP------LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~------Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
++.++++..+++.+.. +.|.+|++.|..+...... ..+.+.|++|+|---.+++|+
T Consensus 1309 al~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred eeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 8889999999998876 8899999988766543321 456789999999888888775
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-09 Score=127.63 Aligned_cols=270 Identities=11% Similarity=0.084 Sum_probs=191.9
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCC--CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHC--APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt--~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
++.+.++|||+ ++|+|..--.|++||+..-.+ .+..|. ..|.-.-++.|-..++---.|.+|-+..-... .-.
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-hy~- 129 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-HYR- 129 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe-eee-
Confidence 45688999999 577888999999999876433 344454 45777777777777777778888865433221 000
Q ss_pred cccCCCCCCcccccc-CCCCCceeecCCCcccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2076 GTIEPSSGMGTPGNS-IGSSTPANASADKSRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~S-pDG~~Las~s~D~s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...+.....+.++ +....+.++....+.+.++ +..+..+....+.+++|.+++...+|++|+.||.|-.||.++.
T Consensus 130 --~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 130 --TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred --eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 0111111222222 2233444555555544443 3445666667789999999999999999999999999999988
Q ss_pred eEEEEEecC-------------CcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccC--CCE
Q 000085 2153 RLIRRLVGV-------------DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLD--GHS 2216 (2342)
Q Consensus 2153 klIrsL~gh-------------~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPD--Gk~ 2216 (2342)
..+.++... .++.+.|+.||--+..+..+|.+.+|++.. .++........-+|..+.|.+. +..
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 777766431 268999999999999999999999999974 3444333334567888888665 333
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
+++. ....++|||-.+|+....+. -...++.+|+-|
T Consensus 288 v~S~------------------------------------------Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p 323 (703)
T KOG2321|consen 288 VVSM------------------------------------------DKRILKIWDECTGKPMASIE--PTSDLNDFCFVP 323 (703)
T ss_pred EEec------------------------------------------chHHhhhcccccCCceeecc--ccCCcCceeeec
Confidence 4422 13568999999999988887 344599999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 000085 2297 DNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
++.+++++-.++.+..|-+|.+
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEEecCCCcceeEEcccc
Confidence 9999999999999999988766
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.8e-09 Score=133.99 Aligned_cols=249 Identities=14% Similarity=0.157 Sum_probs=169.1
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCC---CCeEEEEecC--CCCEEEEEeCCCceEEEeccCCcccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC---APVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt---~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
..+.|+|-...++++...-.|+|||.+.++.+..+..+. ..|+.+.+-. |...+++||.||.|+||+-......
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~- 1146 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK- 1146 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC-
Confidence 347788888888888777789999999999887776543 5688888865 4578999999999999975432100
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL 2154 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl 2154 (2342)
...++++ +... ...+.+-.+.=.-+.|.....+++++|.-..|+|||..+..+
T Consensus 1147 ------------------~~eLVTa-w~~L--------s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1147 ------------------KPELVTA-WSSL--------SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV 1199 (1387)
T ss_pred ------------------CceeEEe-eccc--------cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee
Confidence 0011111 1100 000111111113456776666677777688999999999888
Q ss_pred EEEEecCC---cEEEEEe-cCCcEEEEEeCCCeEEEEEeCCce---eeeecCCCCCC--eEEEEEccCCCE-EEEEeCCC
Q 000085 2155 IRRLVGVD---AHAVSLS-SEGVIMTWNKLQHTLSSFTLNGVL---VARAKLPLSGS--IGCMEISLDGHS-ALIGVNSS 2224 (2342)
Q Consensus 2155 IrsL~gh~---vssLSfS-pDG~IlVwdssdGsI~I~dlnG~~---L~s~~~~Hs~~--ItsLafSPDGk~-LaSGS~DG 2224 (2342)
++.+.... ++.++.+ ..|.+++.+..||.+++|+..-.. .......|+.. |..+.+.+.|-- |++|+.
T Consensus 1200 ~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~-- 1277 (1387)
T KOG1517|consen 1200 VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ-- 1277 (1387)
T ss_pred EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc--
Confidence 88776543 4444443 347999999999999999975321 22223347776 999999887655 777752
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-CC---CCCeEEEEEecCCCE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-GE---GQDITALALNKDNTN 2300 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-gH---s~~ItsLafSPDG~~ 2300 (2342)
||.|++||++.......+.. .| ++..+++..|++...
T Consensus 1278 ---------------------------------------~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1278 ---------------------------------------DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred ---------------------------------------CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe
Confidence 67899999987322221111 22 335999999999999
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 000085 2301 LLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2301 LaSGSsDGsIrVWDi~sL 2318 (2342)
+++|+. +.|.||+..+-
T Consensus 1319 iAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred eeecCc-ceEEEEecChh
Confidence 999998 99999996554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=124.95 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=136.8
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCcccceec----ccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2005 THDKEIITGGHVDGSIKLLTSDGAKTLETA----SGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~tgkll~tL----~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
.+.+--+..|-..|.|.+.|....+..+.+ .-.+..|+|+.|-|.+ ..++.+-.+|.+.++|......
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~------- 254 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG------- 254 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-------
Confidence 456667788888999999987652221111 1134789999999854 4555667899999998743110
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
.........+++..++....-... ...++..+.--.+.|+..+|+|||+++++.|.||.++|+|..+.+++..++
T Consensus 255 --~t~p~~~~~k~~~~f~i~t~ksk~---~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk 329 (636)
T KOG2394|consen 255 --ATAPSYQALKDGDQFAILTSKSKK---TRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK 329 (636)
T ss_pred --CCCCcccccCCCCeeEEeeeeccc---cCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH
Confidence 000111122344444333221111 113444444445689999999999999999999999999998877665554
Q ss_pred c--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc
Q 000085 2160 G--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL 2212 (2342)
Q Consensus 2160 g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP 2212 (2342)
. .+..++||||||++++.+..|.-+.+|++..+.+...-.+|..+|+.|+|.|
T Consensus 330 SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 3 2468999999999999999999999999987666665667999999999997
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-08 Score=128.00 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=138.0
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.++|.+ |...+.+..|...|.+.+|+|||+.|+..+.+ ..|.+||+.++...
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--------------------- 233 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--------------------- 233 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---------------------
Confidence 457777774 44555566788899999999999999887743 35899998775211
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEE--CCCCeEEEEEecCC--cEEEEEe
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHS--IRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWD--LrTGklIrsL~gh~--vssLSfS 2169 (2342)
.+....+.+.+.+|+|||+.++ +.+.+|...||. +.++. .+.+..+. ....+|+
T Consensus 234 --------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS 292 (427)
T PRK02889 234 --------------------VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS 292 (427)
T ss_pred --------------------EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc
Confidence 1112223456789999998876 567788766654 44444 44444332 3567899
Q ss_pred cCCcEEEEEeC-CCeEEEEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEGVIMTWNKL-QHTLSSFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG~IlVwdss-dGsI~I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|||+.+++... .+...+|.+ .+........ +........|+|||++++..+.++.
T Consensus 293 pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~s~~~g--------------------- 350 (427)
T PRK02889 293 PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF-TGSYNTSPRISPDGKLLAYISRVGG--------------------- 350 (427)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCceEEEec-CCCCcCceEECCCCCEEEEEEccCC---------------------
Confidence 99998776543 355555554 4433332221 2233456789999999987653211
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK---QLIVFTD 2315 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG---sIrVWDi 2315 (2342)
+..|.+||+.+++... +. .........|+|||++|+.++.++ .+.+.+.
T Consensus 351 -----------------~~~I~v~d~~~g~~~~-lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 351 -----------------AFKLYVQDLATGQVTA-LT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred -----------------cEEEEEEECCCCCeEE-cc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 2369999998887543 33 223456789999999998877554 2444454
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-08 Score=116.67 Aligned_cols=235 Identities=14% Similarity=0.173 Sum_probs=156.7
Q ss_pred EEEEEE----cCCcEEEEecC--Ccccceec-ccCCCCeEEEEecCCCC-----EEEEEeCCCceEEEeccCCccccccc
Q 000085 2010 IITGGH----VDGSIKLLTSD--GAKTLETA-SGHCAPVTCLALSSDSN-----FLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2010 lLASGS----~DGsIrVWDl~--tgkll~tL-~GHt~~VtcLAfSPDG~-----~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+||.|+ ..+.|.|..++ +++.+..- ..|..+++.+.|.|+.. +|+|++ ..+++|.+.........
T Consensus 61 rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~- 137 (364)
T KOG0290|consen 61 RLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL- 137 (364)
T ss_pred eEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh-
Confidence 777776 35667776554 44443221 45999999999999863 566543 57999998753111000
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeE--
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRL-- 2154 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGkl-- 2154 (2342)
. ++... ..-..+..++++..|+. +.+++.++|-|-++.|||+.+|..
T Consensus 138 ----~--------------~~L~~------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 138 ----Q--------------SVLNN------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT 187 (364)
T ss_pred ----h--------------hhhcc------------CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence 0 00000 01133567899999985 678999999999999999998732
Q ss_pred -EEEEecC--CcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecC--C-CCCCeEEEEEccCC-CEEEEEeCCCCC
Q 000085 2155 -IRRLVGV--DAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKL--P-LSGSIGCMEISLDG-HSALIGVNSSST 2226 (2342)
Q Consensus 2155 -IrsL~gh--~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~--~-Hs~~ItsLafSPDG-k~LaSGS~DGs~ 2226 (2342)
...+-.| ++..++|+..|. +++.-+.+|.+++|++....-.+... + ...+...++|++.. +++++-
T Consensus 188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf------ 261 (364)
T KOG0290|consen 188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF------ 261 (364)
T ss_pred eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh------
Confidence 3445455 489999999775 44555789999999986422111111 1 13455566666533 233321
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeEEEEEecCCCCCeEEEEEecC-CCEEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHVLKLGEGQDITALALNKD-NTNLLVS 2304 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~tL~lgHs~~ItsLafSPD-G~~LaSG 2304 (2342)
+.....|.|.|++. ..++..+. +|.+.|++++|.|. ..+|+++
T Consensus 262 ----------------------------------~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 262 ----------------------------------AMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred ----------------------------------hcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCceeeec
Confidence 11245788999876 45677787 99999999999995 4789999
Q ss_pred eCCCcEEEEeCCCC
Q 000085 2305 TADKQLIVFTDPAL 2318 (2342)
Q Consensus 2305 SsDGsIrVWDi~sL 2318 (2342)
|.|..+.+||++..
T Consensus 307 GDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 307 GDDCQALIWDLQQM 320 (364)
T ss_pred CCcceEEEEecccc
Confidence 99999999996554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=130.86 Aligned_cols=224 Identities=13% Similarity=0.126 Sum_probs=153.3
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
++.+.||++...........-...|+|++|+| +..+++.|+.+|.|.+||+..+.... ..
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------~s---------- 281 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------PS---------- 281 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------Cc----------
Confidence 34789999987633333333467899999999 46788889999999999998853210 00
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCCeE------EEEEe--------
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL--GVVVSCSDSSDLLLHSIRRGRL------IRRLV-------- 2159 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg--~lLaSGS~DGtIrIWDLrTGkl------IrsL~-------- 2159 (2342)
..-.....|..+++.+.|..+- .-++++|.||.|..|+++.-.. .....
T Consensus 282 ---------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~ 346 (555)
T KOG1587|consen 282 ---------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK 346 (555)
T ss_pred ---------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence 0011234689999999997654 4499999999999998864322 11111
Q ss_pred cCCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeee--------ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2160 GVDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVAR--------AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2160 gh~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s--------~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
.+.++.+.|.+.. ..++.+...|.|..-.-.|..... ....|.+.|+++.++|=+..++..+
T Consensus 347 ~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~--------- 417 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV--------- 417 (555)
T ss_pred ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee---------
Confidence 1235677776543 456677777877664433322111 2233899999999999776665443
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC-CCeEEEEEecCCCCCeEEEEEecCCC-EEEEEeCCC
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH-TLKVFHVLKLGEGQDITALALNKDNT-NLLVSTADK 2308 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~-Tgk~L~tL~lgHs~~ItsLafSPDG~-~LaSGSsDG 2308 (2342)
.|.+++||... ...++..+. .+...|++++|||... .|+++..||
T Consensus 418 --------------------------------gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 418 --------------------------------GDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred --------------------------------ccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCC
Confidence 15678999887 666666666 5667799999999874 566778899
Q ss_pred cEEEEeCC
Q 000085 2309 QLIVFTDP 2316 (2342)
Q Consensus 2309 sIrVWDi~ 2316 (2342)
.|.+||+.
T Consensus 465 ~l~iWDLl 472 (555)
T KOG1587|consen 465 NLDIWDLL 472 (555)
T ss_pred ceehhhhh
Confidence 99999953
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-07 Score=112.36 Aligned_cols=209 Identities=16% Similarity=0.201 Sum_probs=140.1
Q ss_pred EecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCC----ccc-----
Q 000085 1961 ASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDG----AKT----- 2030 (2342)
Q Consensus 1961 aSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~t----gkl----- 2030 (2342)
+.+..|.+||+|+... ..+..+ .+...+.++|++|-|-+. -|+.|+.. -|.+|..+. ++.
T Consensus 114 ava~nddvVriy~kss-------t~pt~L--ks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s 183 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSS-------TCPTKL--KSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMS 183 (445)
T ss_pred hhhccCcEEEEeccCC-------CCCcee--cchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccccc
Confidence 4566788999998543 122222 122345688999999765 77777754 488997652 111
Q ss_pred -----ceecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc
Q 000085 2031 -----LETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS 2104 (2342)
Q Consensus 2031 -----l~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s 2104 (2342)
+..-.|| .+|+++.|.+||..++++|. |..|+|||..++..+.-
T Consensus 184 ~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL----------------------------- 233 (445)
T KOG2139|consen 184 THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL----------------------------- 233 (445)
T ss_pred ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc-----------------------------
Confidence 1223456 68999999999999999985 57899999998643211
Q ss_pred cccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEEEec-CCcEEEEEecCCcEEEEEeCCC
Q 000085 2105 RRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR-GRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQH 2182 (2342)
Q Consensus 2105 ~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-GklIrsL~g-h~vssLSfSpDG~IlVwdssdG 2182 (2342)
. .-..+.++-+.||||++++..++-|+..++|+... ....+-.-+ ..+...+|+|+|..+++....
T Consensus 234 ---------~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg- 301 (445)
T KOG2139|consen 234 ---------I--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG- 301 (445)
T ss_pred ---------c--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-
Confidence 1 12245688899999999999999999999996543 333333322 247788999999998887543
Q ss_pred eEEEEEeC--Cceee--------ee----c-------CC---CCCCeEEEEEccCCCEEEEEe
Q 000085 2183 TLSSFTLN--GVLVA--------RA----K-------LP---LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2183 sI~I~dln--G~~L~--------s~----~-------~~---Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.-.+|.+. ++... .. . .+ ..+.+.+++|.|.|.++++.-
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 23344432 21100 00 0 00 356889999999999999764
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-09 Score=133.33 Aligned_cols=225 Identities=13% Similarity=0.164 Sum_probs=182.4
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
+.++.+|+.++.|+.-|.|-.+|+.++++...+.- ...|..+.|-.+.++++.+ ....+.|||-..
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G------------ 200 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG------------ 200 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCC------------
Confidence 78899999999999999999999999988776653 4568889998777776654 556778887544
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV 2161 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh 2161 (2342)
..++.++.| ..|..+.|-|..-++++++..|.++..|+.+|+.+..+...
T Consensus 201 -----------------------------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~ 250 (545)
T KOG1272|consen 201 -----------------------------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG 250 (545)
T ss_pred -----------------------------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc
Confidence 234555555 56888999999889999999999999999999998887643
Q ss_pred --CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2162 --DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2162 --~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
....++-.|-+.++-.+...|+|.+|+.+.+......+.|.++|.++++.++|+|++|.+.
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----------------- 313 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----------------- 313 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-----------------
Confidence 3567788888888888889999999999865544445569999999999999999998862
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
|..++|||++....++++.. ..+...+++|..| +++.+....|.||..
T Consensus 314 ------------------------Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 314 ------------------------DRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred ------------------------ccceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeeehh
Confidence 77899999999887777763 3456788888777 777777789999984
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=117.48 Aligned_cols=152 Identities=13% Similarity=0.126 Sum_probs=112.8
Q ss_pred EEEEEcC-CCCEEEEEEcCCcEEEEecCCccc---ceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcccc
Q 000085 2000 AVVSITH-DKEIITGGHVDGSIKLLTSDGAKT---LETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2000 t~VafSp-DGklLASGS~DGsIrVWDl~tgkl---l~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+++.|.. |-++|.+.+-|.+..|||+++|.. ...+-.|...|..++|..++ +.++|.|.||.|+++|++......
T Consensus 154 TSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST 233 (364)
T KOG0290|consen 154 TSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST 233 (364)
T ss_pred cccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce
Confidence 3356654 446899999999999999998733 55688899999999999865 578999999999999998743222
Q ss_pred cccc--CCCCCCccccccCC-CCCceeecCCCc--cccc---cCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEE
Q 000085 2075 TGTI--EPSSGMGTPGNSIG-SSTPANASADKS--RRRR---IEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLL 2145 (2342)
Q Consensus 2075 t~~~--~~~~~V~svs~SpD-G~~Las~s~D~s--~~~~---i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIr 2145 (2342)
.... ........++++.. -+++++...+.. ...+ ...++..+++|.+.|+.++|.|. ...++||+.|..+.
T Consensus 234 IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 234 IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL 313 (364)
T ss_pred EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence 2211 11334455566653 345555555543 2222 25678999999999999999986 67899999999999
Q ss_pred EEECCC
Q 000085 2146 LHSIRR 2151 (2342)
Q Consensus 2146 IWDLrT 2151 (2342)
+||+.+
T Consensus 314 iWDl~q 319 (364)
T KOG0290|consen 314 IWDLQQ 319 (364)
T ss_pred EEeccc
Confidence 999965
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=115.84 Aligned_cols=267 Identities=12% Similarity=0.108 Sum_probs=164.6
Q ss_pred EEEcCCCC-EEEEEEcC-------CcEEEEecCCc---------ccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceE
Q 000085 2002 VSITHDKE-IITGGHVD-------GSIKLLTSDGA---------KTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTIL 2063 (2342)
Q Consensus 2002 VafSpDGk-lLASGS~D-------GsIrVWDl~tg---------kll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVr 2063 (2342)
++-+|..+ +|++...+ ..+.||.+... +++..+. .|-+.|.|+.|.|++..+++-. |..|.
T Consensus 69 las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~ 147 (370)
T KOG1007|consen 69 LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIV 147 (370)
T ss_pred hhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceE
Confidence 55566554 55555432 24678987532 2344444 4567899999999999999876 89999
Q ss_pred EEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec--CCCEEEEEeCC
Q 000085 2064 LWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS--DLGVVVSCSDS 2141 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP--Dg~lLaSGS~D 2141 (2342)
+|++..+..+... +. ...-.+|....++-+|+| +++.+++. .|
T Consensus 148 l~~l~ess~~vae----------v~------------------------ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d 192 (370)
T KOG1007|consen 148 LWSLDESSKIVAE----------VL------------------------SSESAEMRHSFTSGAWSPHHDGNQVATT-SD 192 (370)
T ss_pred EEEcccCcchhee----------ec------------------------ccccccccceecccccCCCCccceEEEe-CC
Confidence 9999875331100 00 000122566778888988 67777655 47
Q ss_pred CcEEEEECCCCeEEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCcee-eeecCCCCCCeEEEEEccC-CC
Q 000085 2142 SDLLLHSIRRGRLIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLV-ARAKLPLSGSIGCMEISLD-GH 2215 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L-~s~~~~Hs~~ItsLafSPD-Gk 2215 (2342)
+++..||+|+..+...+.. +.+..+.|.|+.. +++.+..+|.+++|+...... .....+|...|+++.|+|. .+
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence 8999999999877766653 3477888888875 455667789999999864322 2233349999999999995 46
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCC-CCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQ-SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~-~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf 2294 (2342)
++++|+.|+.... |-...-. ...+.|..+...... .|..=++=-+..| .+.++. .|...|.+++|
T Consensus 273 LiLs~~SDs~V~L------sca~svSSE~qi~~~~dese~e~------~dseer~kpL~dg-~l~tyd-ehEDSVY~~aW 338 (370)
T KOG1007|consen 273 LILSGGSDSAVNL------SCASSVSSEQQIEFEDDESESED------EDSEERVKPLQDG-QLETYD-EHEDSVYALAW 338 (370)
T ss_pred EEEecCCCceeEE------EeccccccccccccccccccCcc------hhhHHhccccccc-cccccc-ccccceEEEee
Confidence 6677776665222 2111100 001111111000000 0000010011122 245566 79999999999
Q ss_pred ecCCCEEE-EEeCCCcEEEEeCCCC
Q 000085 2295 NKDNTNLL-VSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2295 SPDG~~La-SGSsDGsIrVWDi~sL 2318 (2342)
|.-..+++ +-+.||.+.|=.++..
T Consensus 339 SsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred ccCCCeeEEEeccCceEEeecCChh
Confidence 98776655 5699999999886543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-08 Score=112.97 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=111.6
Q ss_pred EEEEcCCCCEEEEEEc----------CCcEEEEecCC-cccceeccc-CCCCeEEEEecCCCCEEEE--EeCCCceEEEe
Q 000085 2001 VVSITHDKEIITGGHV----------DGSIKLLTSDG-AKTLETASG-HCAPVTCLALSSDSNFLVT--GSQDTTILLWR 2066 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~----------DGsIrVWDl~t-gkll~tL~G-Ht~~VtcLAfSPDG~~LaS--GS~DGTVrVWD 2066 (2342)
.+.|+++|++|+.-.. -+...+|.++. +.....+.- ..++|.+++|+|+|+.++. |..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 3678888875543322 23355555532 233444432 3457999999999998654 45678999999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC---Cc
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS---SD 2143 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D---Gt 2143 (2342)
++. . .+..+ +...++.+.|+|+|+++++|+.+ |.
T Consensus 90 ~~~-~----------------------------------------~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 90 VKG-K----------------------------------------KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred Ccc-c----------------------------------------EeEee--cCCCceEEEECCCCCEEEEEEccCCCcE
Confidence 863 1 12222 34567889999999999998754 67
Q ss_pred EEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeC------CCeEEEEEeCCceeeee
Q 000085 2144 LLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKL------QHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2144 IrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdss------dGsI~I~dlnG~~L~s~ 2197 (2342)
|.+||+++.+.+..........++|||||+.++.... +..+.+|+.+|+.+...
T Consensus 127 l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred EEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 9999999999999988777899999999999887753 46789999999776654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=120.24 Aligned_cols=259 Identities=13% Similarity=0.108 Sum_probs=171.6
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCCcccc--ee
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDGAKTL--ET 2033 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~tgkll--~t 2033 (2342)
..++.+.+.+.+|+|+..++.....+ ..++..+.. +.|.. ....+.+++.||+|++||+.+.... ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f------k~~~~~~N~---vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF------KGPPATTNG---VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee------cCCCCcccc---eEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 45666677779999998775554443 333444444 44544 4457889999999999999876544 34
Q ss_pred cccCC-CCeEEEEecCCCCEEEEEe----CCCceEEEeccCCcc-ccccccCCCCCCccccccCCC-CCceeecCCCccc
Q 000085 2034 ASGHC-APVTCLALSSDSNFLVTGS----QDTTILLWRIHRAFT-SRTGTIEPSSGMGTPGNSIGS-STPANASADKSRR 2106 (2342)
Q Consensus 2034 L~GHt-~~VtcLAfSPDG~~LaSGS----~DGTVrVWDl~tg~~-i~t~~~~~~~~V~svs~SpDG-~~Las~s~D~s~~ 2106 (2342)
..+|. .+-.|++....++.+++|. .|-.|.+||++..+. +......|...|+.+.|+|.. +.+++++.|+...
T Consensus 112 ~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 45565 5778888887888888885 467899999998766 556677889999999999965 5668888887643
Q ss_pred -cccCC-----ceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCC------------cEEEE
Q 000085 2107 -RRIEG-----PIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD------------AHAVS 2167 (2342)
Q Consensus 2107 -~~i~~-----~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~gh~------------vssLS 2167 (2342)
+++.+ .+.....|...|.++.|..++ +.|.+-+.+++..+|+++.+.....+.... .+.+-
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 44422 234445577889999998776 568888999999999999988665554321 12222
Q ss_pred Ee-cC-Cc-EEEEEeCCCeEEEEEeC----C---ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2168 LS-SE-GV-IMTWNKLQHTLSSFTLN----G---VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2168 fS-pD-G~-IlVwdssdGsI~I~dln----G---~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.. |. +. ..+.+...+...++-++ + ..+....-+|..-|.++.|...+..+.+|+.||.
T Consensus 272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 22 22 22 22333324444444432 1 1112222226677888888878888888874333
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-08 Score=109.55 Aligned_cols=205 Identities=15% Similarity=0.143 Sum_probs=134.2
Q ss_pred CCeEEecCCCceEEEecCCCCC----CCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce
Q 000085 1957 GKASASPASGTFLRMFKGPGGS----GADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs----~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~ 2032 (2342)
++.+.++++ +.++-|.-..-. ....|............+-.++++.+.|..+-++.++.|+.++-||+++|+..+
T Consensus 72 d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 445555544 688887633200 111222111111112234456778888876644444479999999999999999
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
++.||++-|.|+.--.....++||+.||+++|||..+++++..+.. .+.
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~-------------------------------yk~ 199 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP-------------------------------YKN 199 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc-------------------------------ccC
Confidence 9999999999999866667899999999999999999876544310 011
Q ss_pred eEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2113 IHVLRGHH-REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2113 l~~L~GHs-~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
...++.|- ..|-|++. +.+++++|+. ..+.+|+++..++...|.-. .+..+.|-.| .++.+.....+..|.++
T Consensus 200 ~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred hhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec
Confidence 11223333 34667765 4677876654 58999999999888877643 3555666544 34455566788999999
Q ss_pred Cceeeeec
Q 000085 2191 GVLVARAK 2198 (2342)
Q Consensus 2191 G~~L~s~~ 2198 (2342)
|.......
T Consensus 275 Gvl~a~ip 282 (325)
T KOG0649|consen 275 GVLQANIP 282 (325)
T ss_pred cEEEEecc
Confidence 86544433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.8e-09 Score=120.54 Aligned_cols=219 Identities=10% Similarity=0.045 Sum_probs=149.7
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEE-EeCCCceEEEeccCCccccccccCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
++|||+|+++|+.+.- .+.|-|..+-+..+.+.. -+.|.-+.|..|..+++. ...|+.|.+|++....-
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-------- 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-------- 83 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee--------
Confidence 6899999999998744 788888888776665443 456888999988877655 57889999999987321
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEE-E
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRR-L 2158 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrs-L 2158 (2342)
...+......+.+++|||||+.+ .+..-|-.|.||.+.+.+.... .
T Consensus 84 --------------------------------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~ 131 (447)
T KOG4497|consen 84 --------------------------------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH 131 (447)
T ss_pred --------------------------------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc
Confidence 12234456788999999999655 5666799999999988765433 2
Q ss_pred ecCCcEEEEEecCCcEEEEEeCCCeE---EEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccc
Q 000085 2159 VGVDAHAVSLSSEGVIMTWNKLQHTL---SSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235 (2342)
Q Consensus 2159 ~gh~vssLSfSpDG~IlVwdssdGsI---~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw 2235 (2342)
..+.+..++|.+||++.+...+.... .++.-..-.+.......+-..+.+.|+|||..+++-. ..
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd--~~---------- 199 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD--NV---------- 199 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec--ch----------
Confidence 33557889999999988766543321 1111111111111111344667899999998887431 11
Q ss_pred ccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2236 GLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2236 ~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
-+-.|+.| ..+-++..++|+|.+++|++|+.|+.++|-+
T Consensus 200 ---------------------------Leykv~aY-------------e~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 200 ---------------------------LEYKVYAY-------------ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ---------------------------hhheeeee-------------eeccceeEEEeccccceEEeeccchhhhhhc
Confidence 01122222 2345688899999999999999999998854
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-08 Score=115.53 Aligned_cols=303 Identities=14% Similarity=0.103 Sum_probs=167.9
Q ss_pred eEEEEEcCCCCEEEE-EEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKEIITG-GHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGklLAS-GS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+.-+-|..|..++.+ ...|+.|.+|++...+-...+....+++..++|||||+. |.+...|-.|.||.+.+.......
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec
Confidence 444778888875554 567889999999877767777777889999999999955 556678999999999986543322
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccc-cc-----cCCceEEecCCCCCeEEEEEecCCCEEEEEeC--CCcEEEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRR-RR-----IEGPIHVLRGHHREILCCCVSSDLGVVVSCSD--SSDLLLHS 2148 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~-----i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~--DGtIrIWD 2148 (2342)
.....+..++|++||++.+......-.. .. ....+..+...+-..+.+.|+|||..++.=.. +-.|+.|.
T Consensus 131 --~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 131 --HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred --ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 2334557889999999886655331111 00 01122333444455667777777776653211 11111111
Q ss_pred CCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEe-----CCceeee--ecC------------CCCCCeEEEE
Q 000085 2149 IRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTL-----NGVLVAR--AKL------------PLSGSIGCME 2209 (2342)
Q Consensus 2149 LrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dl-----nG~~L~s--~~~------------~Hs~~ItsLa 2209 (2342)
.+-++..++++|.|+++..+..|+.+++.+- -|..+.- ..- .-.-...|+.
T Consensus 209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 1234556677777777777766665544321 1110000 000 0000112333
Q ss_pred EccCCCEEEEEeCCCCC-CC-CCccccc------ccCCCC--CCccccccccccccCCCCccCCCCeEEEEECCCCeEEE
Q 000085 2210 ISLDGHSALIGVNSSST-NN-GSYDNIQ------GLNSKQ--SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH 2279 (2342)
Q Consensus 2210 fSPDGk~LaSGS~DGs~-d~-~i~d~Lw------~l~~~~--~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~ 2279 (2342)
|.|..--.-.+-.+... .. .....+. +..++. .+.++|+.+....... ....-+.+.+||+...+...
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr--nd~~PnalW~Wdlq~l~l~a 356 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR--NDKYPNALWLWDLQNLKLHA 356 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee--cCCCCceEEEEechhhhhhh
Confidence 33321000000000000 00 0000111 111111 2333444443221111 11124579999999988766
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2280 VLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2280 tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.+. ...+|....|.|....|+.+.....+++|...+
T Consensus 357 vLi--Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 357 VLI--QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred hhh--hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 655 456899999999999999999989999998544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=112.06 Aligned_cols=229 Identities=16% Similarity=0.215 Sum_probs=153.0
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCC--eEEEEecCCCCEEEE-EeCC------CceEEEeccCCcc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAP--VTCLALSSDSNFLVT-GSQD------TTILLWRIHRAFT 2072 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~--VtcLAfSPDG~~LaS-GS~D------GTVrVWDl~tg~~ 2072 (2342)
++|+.|..-+++|..+ -.+||+.+--+......-+.+. +.-+-|- .++|+- |+.+ ..|.|||=....
T Consensus 11 vs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k~~- 86 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLKER- 86 (346)
T ss_pred EEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecccCc-
Confidence 8899999989988754 4899998754332222222222 2222222 244433 3332 468899833321
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-C
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR-R 2151 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr-T 2151 (2342)
++..+ .-..+|.+|.+.++ .+|.. ..+.|+||... +
T Consensus 87 ---------------------------------------~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n 123 (346)
T KOG2111|consen 87 ---------------------------------------CIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDN 123 (346)
T ss_pred ---------------------------------------EEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCC
Confidence 22222 23578999998764 34443 35789999987 4
Q ss_pred CeEEEEEecCC--cEEEEEe--cCCcEEEEE-eCCCeEEEEEeCCceee--eecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2152 GRLIRRLVGVD--AHAVSLS--SEGVIMTWN-KLQHTLSSFTLNGVLVA--RAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfS--pDG~IlVwd-ssdGsI~I~dlnG~~L~--s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
-+.++.+.... .-.++.+ .+..++++- ...|++++-++...... .....|...|.|++++-+|..++|+|..|
T Consensus 124 ~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 124 PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 56666664321 1233333 344555554 44589999888654432 33344999999999999999999998655
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCC-CCCeEEEEEecCCCEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGE-GQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgH-s~~ItsLafSPDG~~LaS 2303 (2342)
+ -|+|||..+|..++.+..|- .+.|.+++|||+..+|++
T Consensus 204 T----------------------------------------LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 204 T----------------------------------------LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred E----------------------------------------EEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 5 49999999999999988543 367999999999999999
Q ss_pred EeCCCcEEEEeCCC
Q 000085 2304 STADKQLIVFTDPA 2317 (2342)
Q Consensus 2304 GSsDGsIrVWDi~s 2317 (2342)
++.-|+|.||.+..
T Consensus 244 sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRD 257 (346)
T ss_pred EcCCCeEEEEEeec
Confidence 99999999998543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.7e-08 Score=111.45 Aligned_cols=150 Identities=12% Similarity=0.139 Sum_probs=106.4
Q ss_pred EEEEecCCCEEEEEeC----------CCcEEEEECCC-CeEEEEEe--c-CCcEEEEEecCCcEE--EEEeCCCeEEEEE
Q 000085 2125 CCCVSSDLGVVVSCSD----------SSDLLLHSIRR-GRLIRRLV--G-VDAHAVSLSSEGVIM--TWNKLQHTLSSFT 2188 (2342)
Q Consensus 2125 ~VafSPDg~lLaSGS~----------DGtIrIWDLrT-GklIrsL~--g-h~vssLSfSpDG~Il--VwdssdGsI~I~d 2188 (2342)
.+.|+++|+.|+.-.. -|...+|.++. +..+..+. . ..+..++|+|+|..+ +.+.....+.+|+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4567777766543222 12344444422 22333332 2 248999999999864 3344567899999
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
+++..+... +...++.+.|+|+|+++++|+..+. .|.|.
T Consensus 90 ~~~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~--------------------------------------~G~l~ 128 (194)
T PF08662_consen 90 VKGKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNL--------------------------------------NGDLE 128 (194)
T ss_pred CcccEeEee---cCCCceEEEECCCCCEEEEEEccCC--------------------------------------CcEEE
Confidence 987666543 4567889999999999999974322 57899
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA------DKQLIVFTDPAL 2318 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs------DGsIrVWDi~sL 2318 (2342)
+||+.+.+.+.+.. |. .++.++|+|||++|++++. |+.++||+..+.
T Consensus 129 ~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 129 FWDVRKKKKISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEECCCCEEeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 99999999888766 43 4789999999999998864 899999997543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-07 Score=118.14 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=119.7
Q ss_pred EEEEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCC--ceEEEeccCCccc
Q 000085 2000 AVVSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDT--TILLWRIHRAFTS 2073 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DG--TVrVWDl~tg~~i 2073 (2342)
...+|+|||+.|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+ +.+.++ .|.+||+.++..
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~- 270 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL- 270 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-
Confidence 347899999988887654 479999998876543 334566677899999998775 455555 477777765321
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDLr 2150 (2342)
..+..|........|+||++.|+.++. +| .|+++|+.
T Consensus 271 ----------------------------------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 271 ----------------------------------------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred ----------------------------------------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 112223333445689999998876654 33 58888988
Q ss_pred CCeEEEEE-ecCCcEEEEEecCCcEEEEEeCCC---eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2151 RGRLIRRL-VGVDAHAVSLSSEGVIMTWNKLQH---TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2151 TGklIrsL-~gh~vssLSfSpDG~IlVwdssdG---sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+++..+.. .+......+++|||+.+++...++ .|.++++.+....... .........|+|||++|+..+.
T Consensus 311 ~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 311 GGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred CCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEe
Confidence 77654322 223356778999999998887664 6778887654333221 2223455689999999988764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-07 Score=117.53 Aligned_cols=215 Identities=17% Similarity=0.107 Sum_probs=140.9
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
..|.++|.+++ ..+.+..+...+.+.+|+|||++|+.++.+ ..|.+||+.++..
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------------- 226 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------------- 226 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----------------------
Confidence 35888887644 345566677789999999999999887654 4789999876421
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCC--cEEEEECCCCeEEEEEecCC-cEEEEEec
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSS--DLLLHSIRRGRLIRRLVGVD-AHAVSLSS 2170 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DG--tIrIWDLrTGklIrsL~gh~-vssLSfSp 2170 (2342)
..+..+...+.+++|+||++.++ +.+.++ .|++||+.++...+...... ....+|++
T Consensus 227 -------------------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~ 287 (417)
T TIGR02800 227 -------------------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP 287 (417)
T ss_pred -------------------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC
Confidence 11122344556788999998765 445444 58999998876543332222 34568999
Q ss_pred CCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2171 EGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2171 DG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
||+.+++... .+ .++++++.+....... .+...+..+.|+|||++++.++.+..
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~-~~~~~~~~~~~spdg~~i~~~~~~~~---------------------- 344 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGEVRRLT-FRGGYNASPSWSPDGDLIAFVHREGG---------------------- 344 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccCeEECCCCCEEEEEEccCC----------------------
Confidence 9998877643 33 5666676654433222 24556778899999999997753211
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCC
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK---QLIVFTDP 2316 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG---sIrVWDi~ 2316 (2342)
...|.+||+.++... .+. . ........|+|||++|+..+.++ .+.+.+..
T Consensus 345 ----------------~~~i~~~d~~~~~~~-~l~-~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 345 ----------------GFNIAVMDLDGGGER-VLT-D-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ----------------ceEEEEEeCCCCCeE-Ecc-C-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 236888998876542 332 1 22345668999999998877654 35555533
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.3e-08 Score=128.20 Aligned_cols=221 Identities=12% Similarity=0.074 Sum_probs=154.0
Q ss_pred EecCCcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2023 LTSDGAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2023 WDl~tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
|+. .|..+..+..|...|..++.++.. .+++|||.||+|++|+...-....
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------------------------- 1085 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG--------------------------- 1085 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------------------------
Confidence 554 467888899999999999998765 999999999999999997631100
Q ss_pred CCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--e-----EEEEEecCC-cEEE---EEe-
Q 000085 2102 DKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG--R-----LIRRLVGVD-AHAV---SLS- 2169 (2342)
Q Consensus 2102 D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG--k-----lIrsL~gh~-vssL---SfS- 2169 (2342)
+ ..+...++.--...+.++.+.+.++.+|.++.||.|.+.++... . +.+....+. ...+ ++.
T Consensus 1086 -~-----s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~ 1159 (1431)
T KOG1240|consen 1086 -G-----SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA 1159 (1431)
T ss_pred -c-----eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc
Confidence 0 00112222224578899999999999999999999999998752 1 122222111 1111 111
Q ss_pred cCC-cEEEEEeCCCeEEEEEeCCceeee-ecC-CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEG-VIMTWNKLQHTLSSFTLNGVLVAR-AKL-PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG-~IlVwdssdGsI~I~dlnG~~L~s-~~~-~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
.++ ..+++....+.+..|++....-.. ... ...+.|++++.+|.+.++++|+.
T Consensus 1160 ~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts------------------------ 1215 (1431)
T KOG1240|consen 1160 IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS------------------------ 1215 (1431)
T ss_pred cccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC------------------------
Confidence 123 367777777888888875322111 111 14589999999999999999962
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC---CEEEEEe--CCCcEEEEeCCCC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN---TNLLVST--ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG---~~LaSGS--sDGsIrVWDi~sL 2318 (2342)
.|.+.+||++=+.++..+..++..+|+.+..+|-. ...++++ ..+.|.+|+..+.
T Consensus 1216 -----------------~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1216 -----------------RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred -----------------CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 46799999999999998887888999999988743 4555544 5788999995544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.3e-08 Score=114.89 Aligned_cols=219 Identities=15% Similarity=0.156 Sum_probs=157.3
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
-..+|+|.+|++|+..++.+-....|.|+...... ...+.+++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------------------~w~~~htl 51 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------------------LWEPAHTL 51 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------------------Cceeceeh
Confidence 45789999999999999999999999999877642 12457788
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEEEe---c-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR-RGRLIRRLV---G-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr-TGklIrsL~---g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
..|...|++|+|+|..+.|++|+.|..-++|... .++-..++. . ...+++.|+|.++.++.++....|.++.+.+
T Consensus 52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 9999999999999999999999999999999994 444333322 1 2378999999999999988888888887754
Q ss_pred ce----eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2192 VL----VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2192 ~~----L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
.. -..+..++...|++++|+|++-++++|+.|+.-.... .-+..+.... .+
T Consensus 132 ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS-ayIK~Vdekp--------ap---------------- 186 (361)
T KOG1523|consen 132 ENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS-AYIKGVDEKP--------AP---------------- 186 (361)
T ss_pred ccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE-EeeeccccCC--------CC----------------
Confidence 21 1223345788999999999999999998554411000 0000000000 00
Q ss_pred EEEECC--CCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2268 CFLDLH--TLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2268 rIWDL~--Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.-|+-+ -|+++..+. ...+.|..+.|+|+|..|+-.+.|+.+.+-|....
T Consensus 187 ~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 187 TPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred CCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 001111 133344443 45678999999999999999999999999996554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-07 Score=113.90 Aligned_cols=332 Identities=14% Similarity=0.112 Sum_probs=216.0
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-----------CCceEEEec
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-----------DTTILLWRI 2067 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-----------DGTVrVWDl 2067 (2342)
-+.+.|||-|.+|++-+.-| |.+|--.+-..++.+. |.+ |.-+.|||+.+||+|-|. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35689999999999988665 7899766555555554 665 899999999999999653 257999999
Q ss_pred cCCcccccccc--CCCCCCccccccCCCCCceeecCCCccccccCCceEEecC---CCCCeEEEEEecCCCEEEEEeC--
Q 000085 2068 HRAFTSRTGTI--EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG---HHREILCCCVSSDLGVVVSCSD-- 2140 (2342)
Q Consensus 2068 ~tg~~i~t~~~--~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G---Hs~~Vt~VafSPDg~lLaSGS~-- 2140 (2342)
.+|...+.+.. ..........||.|++++|.-..+.+....... ..-+.+ .-..|....|+|.+.+||-=+.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99987777633 333445567889999999888777776665543 222222 2356788899999887763221
Q ss_pred ---CCcEEEEECCCCeEEEEEecCCcE--EEEEecCCcEEEEEeC-------CC---eEEEEEeCCceeeeecCCCCCCe
Q 000085 2141 ---SSDLLLHSIRRGRLIRRLVGVDAH--AVSLSSEGVIMTWNKL-------QH---TLSSFTLNGVLVARAKLPLSGSI 2205 (2342)
Q Consensus 2141 ---DGtIrIWDLrTGklIrsL~gh~vs--sLSfSpDG~IlVwdss-------dG---sI~I~dlnG~~L~s~~~~Hs~~I 2205 (2342)
-..+.+-.+-+++.+++-..+.+. .+-|-.+|.++..... .| .+.+|.+..+.+..........|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 235667777777777776555443 3456667776655421 12 24555555444333333467889
Q ss_pred EEEEEccCCCEEEEEeCCCCCCCCCcccccccC-------------CCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2206 GCMEISLDGHSALIGVNSSSTNNGSYDNIQGLN-------------SKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2206 tsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~-------------~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
...+|-|.|..+++-+.... .....++... ....+.+.++|.+......... +..|.+.++|+
T Consensus 449 i~FaWEP~gdkF~vi~g~~~---k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~-s~~g~l~F~D~ 524 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTV---KNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALV-SRRGDLEFYDT 524 (698)
T ss_pred eeeeeccCCCeEEEEEcccc---ccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEec-ccccceEEEec
Confidence 99999999988776542111 1111222222 2234455666665443332222 25788999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCC--ChhhhhhhhhccccCCCcccc
Q 000085 2273 HTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA------DKQLIVFTDPAL--SLKVVDQMLKLGWEGDGLSPL 2339 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs------DGsIrVWDi~sL--s~k~LdQLLk~GWegDGLspL 2339 (2342)
.-..+..+-...|. ..+.+.|.|.|+++++++. |...++|+..+- ....++.+-+..|.+..=++|
T Consensus 525 ~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~L 598 (698)
T KOG2314|consen 525 DYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLL 598 (698)
T ss_pred chhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHHHHHHHHHHhhccCCCCCccc
Confidence 74333222221243 4678999999999999874 667888997653 456778888889998865555
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=111.02 Aligned_cols=230 Identities=15% Similarity=0.157 Sum_probs=154.1
Q ss_pred cCCcEEEEecCCcc--c-ceecccCCCCeEEEEecCCC-CEEEEEeCC-------CceEEEeccCCccccccccCCCCCC
Q 000085 2016 VDGSIKLLTSDGAK--T-LETASGHCAPVTCLALSSDS-NFLVTGSQD-------TTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgk--l-l~tL~GHt~~VtcLAfSPDG-~~LaSGS~D-------GTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
.|+.|.+.+++.+. . ...+..|.+.|+.++-+|-. +.|+|+-.| ..+.||.+.........
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------- 109 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------- 109 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc--------
Confidence 57788888776542 2 24677788999999999954 556665432 23568877653211000
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE-EEEEec--
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLR-GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL-IRRLVG-- 2160 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~-GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl-IrsL~g-- 2160 (2342)
.+-.++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+..
T Consensus 110 -----------------------~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~ 165 (370)
T KOG1007|consen 110 -----------------------STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE 165 (370)
T ss_pred -----------------------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc
Confidence 0011222333 4556899999999999998776 88999999988765 333321
Q ss_pred -----CCcEEEEEec--CCcEEEEEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2161 -----VDAHAVSLSS--EGVIMTWNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2161 -----h~vssLSfSp--DG~IlVwdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
+..+.-+||| ||+.++. ..++++..|++.... ...+...|...|..+.|+|+-+++++.+ .
T Consensus 166 s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~---g------- 234 (370)
T KOG1007|consen 166 SAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTC---G------- 234 (370)
T ss_pred cccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEc---C-------
Confidence 1133445665 4554443 345667777765321 1222233888999999999988766543 1
Q ss_pred cccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcE
Q 000085 2233 NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQL 2310 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsI 2310 (2342)
.||.|+|||.+. ..+++.+. +|...|++|.|+|.. +.|++||.|..|
T Consensus 235 ------------------------------DdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 235 ------------------------------DDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred ------------------------------CCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCcee
Confidence 278899999975 55677888 999999999999965 567799999999
Q ss_pred EEEeCCCCC
Q 000085 2311 IVFTDPALS 2319 (2342)
Q Consensus 2311 rVWDi~sLs 2319 (2342)
.+|-....+
T Consensus 284 ~Lsca~svS 292 (370)
T KOG1007|consen 284 NLSCASSVS 292 (370)
T ss_pred EEEeccccc
Confidence 999865544
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-07 Score=116.34 Aligned_cols=180 Identities=15% Similarity=0.042 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCC--ceEEEeccCCcc
Q 000085 1999 SAVVSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDT--TILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DG--TVrVWDl~tg~~ 2072 (2342)
+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+.|+ +.+.++ .|.+||+.++..
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 3457899999988776544 368999998876533 333344556789999999876 555565 466667765321
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEEC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSI 2149 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDL 2149 (2342)
..+..+........|+|||+.++..+. +| .|+++|+
T Consensus 280 -----------------------------------------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 280 -----------------------------------------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred -----------------------------------------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 112223334556789999988765553 33 5788888
Q ss_pred CCCeEEEEE-ecCCcEEEEEecCCcEEEEEeCC-C--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2150 RRGRLIRRL-VGVDAHAVSLSSEGVIMTWNKLQ-H--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2150 rTGklIrsL-~gh~vssLSfSpDG~IlVwdssd-G--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
.+++..+.. .+......+++|||+.+++.... + .+.++++.+....... +........|+|||+.++..+.
T Consensus 319 ~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 319 NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEe
Confidence 887754322 22234457899999988877543 3 4677777654433322 2223335689999999987753
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.8e-07 Score=116.98 Aligned_cols=213 Identities=10% Similarity=0.037 Sum_probs=131.1
Q ss_pred EEEEEcCCCCEEEEEEcC-C--cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEE-EeCCCc--eEEEeccCCccc
Q 000085 2000 AVVSITHDKEIITGGHVD-G--SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT-GSQDTT--ILLWRIHRAFTS 2073 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~D-G--sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaS-GS~DGT--VrVWDl~tg~~i 2073 (2342)
....|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+|||+.|+. .+.++. |.+||+.++.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-- 297 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-- 297 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--
Confidence 347899999988776543 2 58889998876432 2222233457899999997764 566776 5555655431
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDLr 2150 (2342)
...+..+.......+|+||++.++..+. +| .|+++|+.
T Consensus 298 ---------------------------------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~ 338 (448)
T PRK04792 298 ---------------------------------------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA 338 (448)
T ss_pred ---------------------------------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 1122333444567789999998766553 33 57777888
Q ss_pred CCeEEEE-EecCCcEEEEEecCCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2151 RGRLIRR-LVGVDAHAVSLSSEGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2151 TGklIrs-L~gh~vssLSfSpDG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
+++..+. +.+......+|+|||+.+++... .+ .|.++++.+........ ........|+|||+.++..+..+.
T Consensus 339 ~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~--~~~d~~ps~spdG~~I~~~~~~~g- 415 (448)
T PRK04792 339 SGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS--TRLDESPSVAPNGTMVIYSTTYQG- 415 (448)
T ss_pred CCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC--CCCCCCceECCCCCEEEEEEecCC-
Confidence 7775432 23333445689999998877544 34 34555665543332221 112234579999999987653222
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
...+++++. ++.....+. .+.+.+...+|+|
T Consensus 416 -------------------------------------~~~l~~~~~-~G~~~~~l~-~~~g~~~~p~Wsp 446 (448)
T PRK04792 416 -------------------------------------KQVLAAVSI-DGRFKARLP-AGQGEVKSPAWSP 446 (448)
T ss_pred -------------------------------------ceEEEEEEC-CCCceEECc-CCCCCcCCCccCC
Confidence 235777787 455555555 4455677778876
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.1e-07 Score=114.52 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=136.5
Q ss_pred cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2019 SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2019 sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.|.++|.+++. .+.+..|...+...+|+|||+.|+..+.+ ..|.+||+.++...
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---------------------- 236 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---------------------- 236 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE----------------------
Confidence 47778887554 45566677889999999999999877644 35788888764211
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCC--cEEEEECCCCeEEEEEecCC--cEEEEEec
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSS--DLLLHSIRRGRLIRRLVGVD--AHAVSLSS 2170 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DG--tIrIWDLrTGklIrsL~gh~--vssLSfSp 2170 (2342)
.+....+.+.+.+|+|||+.++ +.+.+| .|++||+.++...+ +..+. ....+|+|
T Consensus 237 -------------------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~sp 296 (430)
T PRK00178 237 -------------------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGK 296 (430)
T ss_pred -------------------EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECC
Confidence 1111122344678999998876 455555 58888998887543 33322 45578999
Q ss_pred CCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2171 EGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2171 DG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
||+.+++... ++ .++++++.+........ .........|+|||++++..+....
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~---------------------- 353 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHRQDG---------------------- 353 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEccCC----------------------
Confidence 9997777643 33 46666665443333222 1223345789999999986642111
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCC
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD---KQLIVFTDPA 2317 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD---GsIrVWDi~s 2317 (2342)
...|.+||+.+++.. .+. +........|+|||++|+..+.+ ..|.+++..+
T Consensus 354 ----------------~~~l~~~dl~tg~~~-~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 354 ----------------NFHVAAQDLQRGSVR-ILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ----------------ceEEEEEECCCCCEE-Ecc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 235889999887643 333 12223356899999999876644 3466667544
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=125.91 Aligned_cols=93 Identities=16% Similarity=0.257 Sum_probs=79.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
+++-++|+|||++||+.+.||.+||+|.++.+++..++.--+...|++|||||+||+||+.|--|.||.+...+.+.. .
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-G 370 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-G 370 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-c
Confidence 344499999999999999999999999999988888777778899999999999999999999999999988543322 3
Q ss_pred cCCCCCCccccccC
Q 000085 2078 IEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2078 ~~~~~~V~svs~Sp 2091 (2342)
.+|..-|..++|.|
T Consensus 371 qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSWVSVVAFDP 384 (636)
T ss_pred cccccceeeEeecc
Confidence 56777777777775
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.5e-07 Score=110.34 Aligned_cols=321 Identities=15% Similarity=0.123 Sum_probs=202.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---------------CceE
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---------------TTIL 2063 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---------------GTVr 2063 (2342)
+..+++||.|.+|++.+.. .|.+|+...+..+..+. |. .|.-+.|+|.++||+|=+.. ..+.
T Consensus 35 ~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred hhheeecCcchheehhhcc-ceEEccccchhheeeee-cC-CceecccCcccceeeeeccCCccChhhccCCccccCcee
Confidence 4458999999999987644 48899877665444443 44 48999999999999997643 3499
Q ss_pred EEeccCCccccccccCCCC--CCccccccCCCCCceeecCCCcccccc-----CCceEEecCCCCCeEEEEEecCCC--E
Q 000085 2064 LWRIHRAFTSRTGTIEPSS--GMGTPGNSIGSSTPANASADKSRRRRI-----EGPIHVLRGHHREILCCCVSSDLG--V 2134 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~~~~~~--~V~svs~SpDG~~Las~s~D~s~~~~i-----~~~l~~L~GHs~~Vt~VafSPDg~--l 2134 (2342)
|||+.++..+..+...... ....+.|+.+..+.+-...+......+ ..+.+.++ ...|....|+|.++ .
T Consensus 112 vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 112 VWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDE 189 (561)
T ss_pred EEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCce
Confidence 9999998776665322222 333567777766664443333333221 11222222 35678888888643 3
Q ss_pred EE-----EEeCCCcEEEEECCCCeEEEEE--ecCCcEEEEEecCCcEEEEEeC-----------CCeEEEEEeCCceeee
Q 000085 2135 VV-----SCSDSSDLLLHSIRRGRLIRRL--VGVDAHAVSLSSEGVIMTWNKL-----------QHTLSSFTLNGVLVAR 2196 (2342)
Q Consensus 2135 La-----SGS~DGtIrIWDLrTGklIrsL--~gh~vssLSfSpDG~IlVwdss-----------dGsI~I~dlnG~~L~s 2196 (2342)
++ ..+.++.+++|.+..+..+.+- .......+-|.+.|..++.-.. ...++++.+.+..+..
T Consensus 190 la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V 269 (561)
T COG5354 190 LAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV 269 (561)
T ss_pred EEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce
Confidence 33 3567889999999877766543 2233456677788876654321 1357777777554443
Q ss_pred ecCCCCCCeEEEEEccCCCEEEEEe--CCCCCCCCCcccccccC--------CCCCCccccccccccccCCCCccCCCCe
Q 000085 2197 AKLPLSGSIGCMEISLDGHSALIGV--NSSSTNNGSYDNIQGLN--------SKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2197 ~~~~Hs~~ItsLafSPDGk~LaSGS--~DGs~d~~i~d~Lw~l~--------~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
.. ...++|...+|.|+++.+++.+ .... ..++++. ....+...|++........+ +.--.|.
T Consensus 270 ~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~------~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~ag-F~nl~gn 341 (561)
T COG5354 270 EK-DLKDPVHDFTWEPLSSRFAVISGYMPAS------VSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAG-FDNLQGN 341 (561)
T ss_pred ec-cccccceeeeecccCCceeEEecccccc------eeecccccceEEecCCcccccccccCcccEEEEec-CCccccc
Confidence 22 3578999999999988776654 1111 1122222 22344555666543322211 1113578
Q ss_pred EEEEECCCCeEEE-EEecCCCCCeEEEEEecCCCEEEEEe------CCCcEEEEeCCCCChhhhhhhhhccccCCCccc
Q 000085 2267 ICFLDLHTLKVFH-VLKLGEGQDITALALNKDNTNLLVST------ADKQLIVFTDPALSLKVVDQMLKLGWEGDGLSP 2338 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~-tL~lgHs~~ItsLafSPDG~~LaSGS------sDGsIrVWDi~sLs~k~LdQLLk~GWegDGLsp 2338 (2342)
|.+||......+. .+. ....+-+.|+||++++.+.. .|..|.||++.+- .+..+.+.-|.+.|-..
T Consensus 342 i~i~~~~~rf~~~~~~~---~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~---~~fel~~~~W~p~~~~~ 414 (561)
T COG5354 342 IEIFDPAGRFKVAGAFN---GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA---KVFELTNITWDPSGQYV 414 (561)
T ss_pred eEEeccCCceEEEEEee---cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc---hhhhhhhccccCCcccc
Confidence 9999987655444 554 23345678999999998764 4889999997655 55688888998876443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-07 Score=116.20 Aligned_cols=283 Identities=12% Similarity=0.092 Sum_probs=162.6
Q ss_pred EEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCcccccc
Q 000085 2011 ITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNS 2090 (2342)
Q Consensus 2011 LASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~S 2090 (2342)
+++-..+|.|.|.|..+.+.+..+..+...-..+.|+|||++++.++.||.|.++|+.+.+.+.
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---------------- 72 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---------------- 72 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE----------------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE----------------
Confidence 3555678999999999999999988655544557899999999999999999999999864322
Q ss_pred CCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC--------
Q 000085 2091 IGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRRLVGV-------- 2161 (2342)
Q Consensus 2091 pDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrsL~gh-------- 2161 (2342)
.+.. .....++++++||+++++++ .++.+.++|.++.+.++.+...
T Consensus 73 ------------------------~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~ 127 (369)
T PF02239_consen 73 ------------------------TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPE 127 (369)
T ss_dssp ------------------------EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS-
T ss_pred ------------------------EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccC
Confidence 2222 23457899999999988665 6899999999999999988643
Q ss_pred -CcEEEEEecCCcEEEEEeC-CCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc-----cc
Q 000085 2162 -DAHAVSLSSEGVIMTWNKL-QHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY-----DN 2233 (2342)
Q Consensus 2162 -~vssLSfSpDG~IlVwdss-dGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~-----d~ 2233 (2342)
.+..+..++.+..++.+.. .+.+.+.+... ..+...............|+|+|+|++++..... ..... ..
T Consensus 128 ~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn-~i~viD~~~~k~ 206 (369)
T PF02239_consen 128 SRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSN-KIAVIDTKTGKL 206 (369)
T ss_dssp --EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGT-EEEEEETTTTEE
T ss_pred CCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccc-eeEEEeeccceE
Confidence 2345667888886666654 47777766542 2222222224456778899999999988642111 00000 00
Q ss_pred ccccCCC---CCCcc--cccccc--cc-ccCCCC---ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEE
Q 000085 2234 IQGLNSK---QSGTE--DFDLAS--DQ-SVDNNR---FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLL 2302 (2342)
Q Consensus 2234 Lw~l~~~---~~~~i--aFspd~--~~-s~ss~~---ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~La 2302 (2342)
+..+... ..... ..++.. .. ...... .......+.+||..+.+.+.++. ..+.+ .-+..||+++++.
T Consensus 207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~-~~G~g-lFi~thP~s~~vw 284 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP-TQGGG-LFIKTHPDSRYVW 284 (369)
T ss_dssp EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEE
T ss_pred EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE-CCCCc-ceeecCCCCccEE
Confidence 0111000 00000 011111 00 000000 11234456688999999999999 45555 7788899999999
Q ss_pred EE----eCCCcEEEEeCCCCCh-hhh---hh--hhhccccCCCcc
Q 000085 2303 VS----TADKQLIVFTDPALSL-KVV---DQ--MLKLGWEGDGLS 2337 (2342)
Q Consensus 2303 SG----SsDGsIrVWDi~sLs~-k~L---dQ--LLk~GWegDGLs 2337 (2342)
+. ...++|.|+|..++.. +.+ .. .....|..||-.
T Consensus 285 vd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 285 VDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp EE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred eeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence 88 4558999999877741 111 11 334456666643
|
... |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.8e-08 Score=127.81 Aligned_cols=192 Identities=17% Similarity=0.236 Sum_probs=141.3
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
|-..+.++....++.+-+|+...+ +.+............++..+.++++.-++++|+.-+.|.+|+....+.-..
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~-----~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNS-----SVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccC-----ceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence 344556666666667777775432 222222221122223444456677777999999999999999874333346
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
+.||.+.|..+.|+.||++++|.|.|.++++|++.+.....
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------------------------------------- 211 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------------------------------------- 211 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------------------------------------
Confidence 89999999999999999999999999999999999853211
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
....+|+..|+.++|.|+ .++|++.|.++++|+. .+..+..+..|. +..++..++..+++.+..|+.+++|++.
T Consensus 212 ~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 212 CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 234689999999999987 8999999999999975 444555666653 6777888888888888888888888876
Q ss_pred Cc
Q 000085 2191 GV 2192 (2342)
Q Consensus 2191 G~ 2192 (2342)
+.
T Consensus 289 ~r 290 (967)
T KOG0974|consen 289 GR 290 (967)
T ss_pred cc
Confidence 53
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.2e-07 Score=110.85 Aligned_cols=235 Identities=12% Similarity=0.099 Sum_probs=164.1
Q ss_pred EEEcCCCC--EEEEEEcCCcEEEEecCCcccce------ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 2002 VSITHDKE--IITGGHVDGSIKLLTSDGAKTLE------TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2002 VafSpDGk--lLASGS~DGsIrVWDl~tgkll~------tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
++|.-|++ ++...+.|..+..+.+....+.. +..+.+.+|..++.. ...|++|-.+|.+.+|....+...
T Consensus 61 l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~h 138 (412)
T KOG3881|consen 61 LLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLH 138 (412)
T ss_pred heeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccc
Confidence 55555554 56555567777777766554433 334556778777765 458999999999999998864211
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCC--CcEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDS--SDLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~D--GtIrIWDLr 2150 (2342)
..++..+..+ ..+..+.-++. ...+++|+.. ..+.|||+.
T Consensus 139 ------------------------------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 139 ------------------------------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred ------------------------------------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 0111122222 22333333333 3456779988 889999999
Q ss_pred CCeEEEEEecCC-----------cEEEEEecC--CcEEEEEeCCCeEEEEEeCC--ceeeeecCCCCCCeEEEEEccCCC
Q 000085 2151 RGRLIRRLVGVD-----------AHAVSLSSE--GVIMTWNKLQHTLSSFTLNG--VLVARAKLPLSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2151 TGklIrsL~gh~-----------vssLSfSpD--G~IlVwdssdGsI~I~dlnG--~~L~s~~~~Hs~~ItsLafSPDGk 2215 (2342)
+.+.+.+-+... .+.+.|-+. ...++.....+.+++|+... +++....+ ...+|+++...|+|+
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn 260 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGN 260 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCc
Confidence 886655433211 245666665 66778888889999999863 23333222 567999999999999
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
++++|.. -+.+..+|+++++.+.....+..+.|+++..+
T Consensus 261 ~Iy~gn~-----------------------------------------~g~l~~FD~r~~kl~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 261 FIYTGNT-----------------------------------------KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCH 299 (412)
T ss_pred EEEEecc-----------------------------------------cchhheecccCceeeccccCCccCCcceEEEc
Confidence 9998842 35688999999998887333889999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC
Q 000085 2296 KDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2296 PDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
|.+++|++||-|..|||+|..+
T Consensus 300 p~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 300 PTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999766
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=115.03 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=130.3
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
..+|..+++++.|+++|+|+-|.-.. +..-..+-..|..+.|+|||++|++-+.| ..+||++++|..++.
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~~t---------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSMLT---------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcchh---------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 35678999999999999998554111 11112233456669999999999999999 999999999977766
Q ss_pred ccc--CCCCeEEEEecCCC---CEE--EEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc
Q 000085 2034 ASG--HCAPVTCLALSSDS---NFL--VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR 2106 (2342)
Q Consensus 2034 L~G--Ht~~VtcLAfSPDG---~~L--aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~ 2106 (2342)
... -......+.|+.|+ .+. +....-+.|+.||+..... +..
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~-----------------------------~~~-- 271 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG-----------------------------SNF-- 271 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc-----------------------------ccc--
Confidence 542 23346677787776 222 2334456677776654210 000
Q ss_pred cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CC--cEEEEEecCCcEEEEEeCCCe
Q 000085 2107 RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VD--AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2107 ~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~--vssLSfSpDG~IlVwdssdGs 2183 (2342)
............|++++++.+|++++.|+.||.|-|++..+-++++.++. |. ++.++|+||.+..+--..+..
T Consensus 272 ----l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 272 ----LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred ----cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 00111112235799999999999999999999999999998888777653 43 789999999887766444444
Q ss_pred EEEEEe
Q 000085 2184 LSSFTL 2189 (2342)
Q Consensus 2184 I~I~dl 2189 (2342)
..+..+
T Consensus 348 ~~v~~l 353 (398)
T KOG0771|consen 348 AAVTKL 353 (398)
T ss_pred eeEEEE
Confidence 444443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.8e-08 Score=113.51 Aligned_cols=140 Identities=17% Similarity=0.251 Sum_probs=116.3
Q ss_pred EEEEEEcCCcEEEEecCCc----------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc--ccc-cc
Q 000085 2010 IITGGHVDGSIKLLTSDGA----------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF--TSR-TG 2076 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tg----------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~--~i~-t~ 2076 (2342)
++++|..+|.+.+||+.++ +.......|..+|.++.+.+.-..=++|+.+..+..|.++... ... ..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 7889999999999999987 3333456799999999998766666888999999999987642 211 11
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccc---cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRR---RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~---~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
..-...++..+.+-||++.+++.+||+..+ |+...++..+.-|.+.|++++|+|+..+++++|.|+.|.+|++
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 233456788889999999999999997644 7788899999999999999999999999999999999999986
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-06 Score=112.02 Aligned_cols=216 Identities=16% Similarity=0.079 Sum_probs=132.9
Q ss_pred cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC-C--ceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2019 SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD-T--TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2019 sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D-G--TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.|.++|.+... .+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.++...
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---------------------- 255 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---------------------- 255 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE----------------------
Confidence 57777876543 34556677889999999999998876543 3 4777777664210
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCeEEEEEecC-CcEEEEEecC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD--LLLHSIRRGRLIRRLVGV-DAHAVSLSSE 2171 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt--IrIWDLrTGklIrsL~gh-~vssLSfSpD 2171 (2342)
.+..+. +.....+|+|||+.|+ +.+.+|. |+++|+.+++..+..... .....+|+||
T Consensus 256 ----------------~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpD 316 (448)
T PRK04792 256 ----------------KVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPD 316 (448)
T ss_pred ----------------EecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCC
Confidence 011111 1223578999999776 4566665 888899887654432222 2466889999
Q ss_pred CcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2172 GVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2172 G~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
|+.+++... ++ .++++++.+........ ........+|+|||++++..+....
T Consensus 317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g----------------------- 372 (448)
T PRK04792 317 GKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNG----------------------- 372 (448)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCC-----------------------
Confidence 998777643 33 45555665443333221 2223345789999999987652111
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC-CCc--EEEEeCCCC
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA-DKQ--LIVFTDPAL 2318 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs-DGs--IrVWDi~sL 2318 (2342)
...|.++|+.+++.. .+. .. .......|+|||++|+..+. +|. |.+++.++.
T Consensus 373 ---------------~~~I~~~dl~~g~~~-~lt-~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 373 ---------------KFNIARQDLETGAMQ-VLT-ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred ---------------ceEEEEEECCCCCeE-Ecc-CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 134777888887643 232 11 12234589999998886654 343 667775443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.9e-06 Score=101.46 Aligned_cols=250 Identities=18% Similarity=0.182 Sum_probs=157.1
Q ss_pred EEEEEcCCCCEEEEEEc----CCcEEEEecCCc--cc--ceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCC
Q 000085 2000 AVVSITHDKEIITGGHV----DGSIKLLTSDGA--KT--LETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRA 2070 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~----DGsIrVWDl~tg--kl--l~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg 2070 (2342)
..++++|++++|.+... ++.|..|.+... ++ +.........-+.++++|++++|+++. .+|+|.++++...
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 45899999999888876 568999988753 32 333332334567899999999999887 4899999999873
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSI 2149 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDL 2149 (2342)
..+.... ..+.. .+. .+. ..........++.|+|+++++++... ...|.+|++
T Consensus 120 g~l~~~~-------~~~~~--------~g~----------g~~-~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~ 173 (345)
T PF10282_consen 120 GSLGEVV-------QTVRH--------EGS----------GPN-PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI 173 (345)
T ss_dssp SEEEEEE-------EEEES--------EEE----------ESS-TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccceee-------eeccc--------CCC----------CCc-ccccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence 1111100 00000 000 000 00112345678999999998877653 357999998
Q ss_pred CCCe--EE--EEEe---cCCcEEEEEecCCcEEE-EEeCCCeEEEEEeC--Cceeeee---c-C--C--CCCCeEEEEEc
Q 000085 2150 RRGR--LI--RRLV---GVDAHAVSLSSEGVIMT-WNKLQHTLSSFTLN--GVLVARA---K-L--P--LSGSIGCMEIS 2211 (2342)
Q Consensus 2150 rTGk--lI--rsL~---gh~vssLSfSpDG~IlV-wdssdGsI~I~dln--G~~L~s~---~-~--~--Hs~~ItsLafS 2211 (2342)
.... +. ..+. +.+.+.++|+|||+++. .+..++.|.+|+++ ...+... . . . .......++++
T Consensus 174 ~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 174 DDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp -TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred eCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 7654 32 2232 23478999999998654 44567889998886 2222111 1 1 1 22368899999
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CC--eEEEEEecCCCC
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TL--KVFHVLKLGEGQ 2287 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tg--k~L~tL~lgHs~ 2287 (2342)
|||++|+++.. .+++|.+|++. ++ +.+..+. ..+.
T Consensus 254 pdg~~lyvsnr----------------------------------------~~~sI~vf~~d~~~g~l~~~~~~~-~~G~ 292 (345)
T PF10282_consen 254 PDGRFLYVSNR----------------------------------------GSNSISVFDLDPATGTLTLVQTVP-TGGK 292 (345)
T ss_dssp TTSSEEEEEEC----------------------------------------TTTEEEEEEECTTTTTEEEEEEEE-ESSS
T ss_pred cCCCEEEEEec----------------------------------------cCCEEEEEEEecCCCceEEEEEEe-CCCC
Confidence 99999998742 14578888873 23 4444554 3345
Q ss_pred CeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2288 DITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2288 ~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
..+.++++|+|++|+++. .++.|.+|+++
T Consensus 293 ~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 293 FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 589999999999999886 56789999853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-06 Score=100.54 Aligned_cols=171 Identities=13% Similarity=0.179 Sum_probs=119.8
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC-Ccccccc-ccCCCCCCccccccCCCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR-AFTSRTG-TIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t-g~~i~t~-~~~~~~~V~svs~SpDG~~ 2095 (2342)
+.+.|||-...+++.++. ...+|.++.++++ .||.. ..+.|.||.+.+ .+..+.+ ....+.+..++.-..+...
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 579999966667777665 5678999999865 44433 467899999984 3334433 2222333322222222222
Q ss_pred ceeecCC-C-cccccc----CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCeEEEEEec----CCcE
Q 000085 2096 PANASAD-K-SRRRRI----EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSD-LLLHSIRRGRLIRRLVG----VDAH 2164 (2342)
Q Consensus 2096 Las~s~D-~-s~~~~i----~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGt-IrIWDLrTGklIrsL~g----h~vs 2164 (2342)
++.-+.. + +...+. ..+...+..|...|.|++.+.+|.++||+|..|| |+|||..+|..++.++. ..++
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 2222111 1 111111 1234678899999999999999999999999997 78999999999999864 2479
Q ss_pred EEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2165 AVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
+++|||++.+++..+..|++++|.+.+.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998653
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-07 Score=112.45 Aligned_cols=257 Identities=11% Similarity=0.104 Sum_probs=165.8
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCC--CCCceeecCCCcccc
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIG--SSTPANASADKSRRR 2107 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpD--G~~Las~s~D~s~~~ 2107 (2342)
+...|.+|.+.|..|.|...|..|+|||.|..|.+||+..+.....+..+|...+....|-|. ...++..+.++..+.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 345678999999999999999999999999999999999988888888888888877777763 345566666665442
Q ss_pred cc----C--CceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEec---C-----CcEEEEEecCC
Q 000085 2108 RI----E--GPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVG---V-----DAHAVSLSSEG 2172 (2342)
Q Consensus 2108 ~i----~--~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~g---h-----~vssLSfSpDG 2172 (2342)
.. + .....+..|.+.|.-++.-|+. ..+.|++.|+.+.-+|++++.....+.. + ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 11 1 2245567799999999999874 5688999999999999998765444332 1 13566777766
Q ss_pred c-EEEEEeCCCeEEEEEeCCc-------eeeeecC-----CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2173 V-IMTWNKLQHTLSSFTLNGV-------LVARAKL-----PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2173 ~-IlVwdssdGsI~I~dlnG~-------~L~s~~~-----~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
. .+..+..+..+++|+...- .+..... .....|+|++|+.++.-+++.-.+-.+ +-
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I--------YL--- 362 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI--------YL--- 362 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce--------EE---
Confidence 5 5556666667777775311 1111111 123579999999766555544222110 00
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEE-EecCCC--CCeEEEEE-ecCCCEEEEEeCCCcEEEEeC
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHV-LKLGEG--QDITALAL-NKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~t-L~lgHs--~~ItsLaf-SPDG~~LaSGSsDGsIrVWDi 2315 (2342)
|.++.- .+.... .+ .++ ...+.. ++ ||. ..|.++-| -|...++++|+.=|.|.||+-
T Consensus 363 -------F~~~~~-~G~~p~-~~---s~~------~~~~k~vYK-GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 363 -------FNKSMG-DGSEPD-PS---SPR------EQYVKRVYK-GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred -------eccccc-cCCCCC-CC---cch------hhccchhhc-ccccccccceeeeccCccceEEecCccceEEEEec
Confidence 000000 000000 00 000 011222 44 664 34667764 678899999999999999994
Q ss_pred C
Q 000085 2316 P 2316 (2342)
Q Consensus 2316 ~ 2316 (2342)
.
T Consensus 424 ~ 424 (559)
T KOG1334|consen 424 K 424 (559)
T ss_pred c
Confidence 3
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-06 Score=102.67 Aligned_cols=217 Identities=13% Similarity=0.175 Sum_probs=136.3
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecC----Cc
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSD----GA 2028 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~----tg 2028 (2342)
+.+....+++.+.|.++|+|.... ....| |..... --..++++.+.++...|++|-..|++.-+.+. ..
T Consensus 32 l~~~e~gv~~~s~drtvrv~lkrd--s~q~w--psI~~~---mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 32 LIPKEEGVISVSEDRTVRVWLKRD--SGQYW--PSIYHY---MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred eccCCCCeEEccccceeeeEEecc--ccccC--chhhhh---CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 334445577899999999998654 23334 222111 12345679999999999999999999888654 34
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cc--
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SR-- 2105 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~-- 2105 (2342)
...+....|...|..+-|+.....+++.+.|..+.---.+.+......... .......+... +...+...+ +.
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~--~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL--YAFVGDHSGQITML 180 (404)
T ss_pred chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE--EEEecccccceEEE
Confidence 456677789999999999998999999999987654444443322111000 00000011100 111111111 00
Q ss_pred --ccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-EEEecCC--c----------EEEEEec
Q 000085 2106 --RRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI-RRLVGVD--A----------HAVSLSS 2170 (2342)
Q Consensus 2106 --~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI-rsL~gh~--v----------ssLSfSp 2170 (2342)
....-.++..+.+|.+.+++++|.+....+.+|..|..+.+||+--++-+ ..+.+|. + ..++...
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGE 260 (404)
T ss_pred EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccC
Confidence 01223568889999999999999999999999999999999999654332 2233332 2 3445555
Q ss_pred CCcEEEEEeC
Q 000085 2171 EGVIMTWNKL 2180 (2342)
Q Consensus 2171 DG~IlVwdss 2180 (2342)
||.+.+|+..
T Consensus 261 dg~i~~w~mn 270 (404)
T KOG1409|consen 261 DGGIVVWNMN 270 (404)
T ss_pred CCeEEEEecc
Confidence 6666666543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-06 Score=102.41 Aligned_cols=268 Identities=16% Similarity=0.192 Sum_probs=167.2
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-----cceecccCC------------CCeEEEEecCCCC--EEEEEeC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-----TLETASGHC------------APVTCLALSSDSN--FLVTGSQ 2058 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-----ll~tL~GHt------------~~VtcLAfSPDG~--~LaSGS~ 2058 (2342)
-+.+|.|..+|.+||+|..+|.|.++.-+... ....++.|. ..|..+.|.++++ .++....
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 35679999999999999999999999644221 223344453 4588899988754 5666778
Q ss_pred CCceEEEeccCCcccccc----ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe-cCCCCCeEEEEEecCCC
Q 000085 2059 DTTILLWRIHRAFTSRTG----TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL-RGHHREILCCCVSSDLG 2133 (2342)
Q Consensus 2059 DGTVrVWDl~tg~~i~t~----~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L-~GHs~~Vt~VafSPDg~ 2133 (2342)
|.+|++|.+......... .......+..+.. ...+..+.... ..+...+ .+|+-.|+++.++.|+.
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~ve---a~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVE---ASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceee---eeeeeeccccceeEeeeeeecCccc
Confidence 999999999764322211 0011111111110 01111111100 1122222 46889999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCe-E--EEEEecCC-------cEEEEEecC-CcEEEEEeCCCeEEEEEeCCcee--------
Q 000085 2134 VVVSCSDSSDLLLHSIRRGR-L--IRRLVGVD-------AHAVSLSSE-GVIMTWNKLQHTLSSFTLNGVLV-------- 2194 (2342)
Q Consensus 2134 lLaSGS~DGtIrIWDLrTGk-l--IrsL~gh~-------vssLSfSpD-G~IlVwdssdGsI~I~dlnG~~L-------- 2194 (2342)
.++|+. |=.|.+|++.--. . +-.++.+. ++...|+|. ..+++|.+..|+|++.++....+
T Consensus 178 t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 178 TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 888764 6789999986322 1 22233332 455667764 35677777788888877652111
Q ss_pred eeecCC--------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2195 ARAKLP--------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2195 ~s~~~~--------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
....-+ --..|..+.|+++|+|+++-. . -+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD--y----------------------------------------lt 294 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--Y----------------------------------------LT 294 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--c----------------------------------------ce
Confidence 110001 234788999999999999653 1 35
Q ss_pred EEEEEC-CCCeEEEEEecCCC------------C---CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2267 ICFLDL-HTLKVFHVLKLGEG------------Q---DITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2267 IrIWDL-~Tgk~L~tL~lgHs------------~---~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++||+ ...+++.+++ -|. . .-..++|+-++.+++||+..+.+++|+....
T Consensus 295 vk~wD~nme~~pv~t~~-vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYP-VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eEEEeccccCCcceEEe-ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 888888 3455555555 332 1 1245789999999999999999999995443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-06 Score=106.09 Aligned_cols=237 Identities=11% Similarity=0.019 Sum_probs=143.1
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCE--E-EEEeCCC--ceEEEeccCCccccccccCCCCCCccccccCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF--L-VTGSQDT--TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIG 2092 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~--L-aSGS~DG--TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpD 2092 (2342)
..|.+.|.+++... .+..+...+..-+|||||+. + ++...++ .|.+.++.++.... ............|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccceEECCC
Confidence 46777787765443 34445566778899999975 2 2444444 46666776654222 1223344556789999
Q ss_pred CCCceeecCC-C---ccc--ccc-----CCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE--ECCC-CeEEEE
Q 000085 2093 SSTPANASAD-K---SRR--RRI-----EGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLH--SIRR-GRLIRR 2157 (2342)
Q Consensus 2093 G~~Las~s~D-~---s~~--~~i-----~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIW--DLrT-GklIrs 2157 (2342)
|+.++..... + ... ++. ........++.......+|+|||+.|+..+ .+|...+| ++.. +...+.
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 9988765421 1 111 221 122223323334456789999999877655 56655555 4432 233344
Q ss_pred EecC--CcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2158 LVGV--DAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2158 L~gh--~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
+... .....+|||||+.+++.... ..|.+|++.+........ ....+....|+|||+.|+..+....
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g------- 393 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSN------- 393 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCC-------
Confidence 4332 34678999999988876543 368888887655443321 2346778999999999886542111
Q ss_pred cccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC
Q 000085 2233 NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN 2298 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG 2298 (2342)
...|+++|+.+++...... ..+.+...+|+|-.
T Consensus 394 -------------------------------~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 394 -------------------------------ESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred -------------------------------CceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence 3568999998877544333 34456777887743
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.2e-06 Score=101.43 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=149.5
Q ss_pred EEEEEEcCCcEEEEecCCcc----cceecccCCCCeEEEEecCCCC-EEEEEeCC--CceEEEeccCCccccccccCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAK----TLETASGHCAPVTCLALSSDSN-FLVTGSQD--TTILLWRIHRAFTSRTGTIEPSS 2082 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgk----ll~tL~GHt~~VtcLAfSPDG~-~LaSGS~D--GTVrVWDl~tg~~i~t~~~~~~~ 2082 (2342)
.|++|-.+|.+.+|....+. .+..+..| ..+..+.-++... ++++|+.. ..+.|||+.+...+..-..
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN---- 191 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN---- 191 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC----
Confidence 56666789999999987442 22233333 3466666666544 55568988 8899999998533221100
Q ss_pred CCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCe-EEEEEe
Q 000085 2083 GMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIRRGR-LIRRLV 2159 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLrTGk-lIrsL~ 2159 (2342)
-|+. . ++ +. -.-.++++.|-+. ...+++++.-+.+++||.+.++ ++..+.
T Consensus 192 -------vpnD-~-------------L~-----Lr-VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 192 -------VPND-R-------------LG-----LR-VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred -------CCCc-c-------------cc-----ce-eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec
Confidence 0000 0 00 00 0124567778776 7889999999999999998764 555554
Q ss_pred c--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee-cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccc
Q 000085 2160 G--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA-KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQG 2236 (2342)
Q Consensus 2160 g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~-~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~ 2236 (2342)
. +.+.++...|+|+.++.+...+.+..|++++..+... ..+..+.|+++..+|.+.+++++|.
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-------------- 310 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-------------- 310 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc--------------
Confidence 3 5688999999999999998899999999986555433 5557899999999999999998862
Q ss_pred cCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2237 LNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2237 l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
|+.|+|+|+.+.++++... -...++++-+.++
T Consensus 311 ---------------------------DRyvRIhD~ktrkll~kvY--vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 311 ---------------------------DRYVRIHDIKTRKLLHKVY--VKSRLTFILLRDD 342 (412)
T ss_pred ---------------------------ceeEEEeecccchhhhhhh--hhccccEEEecCC
Confidence 7789999999987776654 3455677777554
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.6e-07 Score=105.23 Aligned_cols=244 Identities=14% Similarity=0.102 Sum_probs=174.0
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC-CccccccccCCCCCCccccccCCCCCceeecCCCccc--
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR-AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-- 2106 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t-g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-- 2106 (2342)
.++.++||.+.|+....-|...-+++.+.|.+++||--.+ ++....+....+.++.++.+.++...+.++..++..-
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4567899999999999999889999999999999996543 4444444455677788888888888887777665432
Q ss_pred -----cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeC
Q 000085 2107 -----RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2107 -----~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdss 2180 (2342)
+..-........|...|..+-|+-...++++.+.|..+.-+-.+.|..+....-.. ...+.+.-. +...+..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEeccc
Confidence 22223455667899999999999999999999999888766666665443321100 000001001 2233334
Q ss_pred CCeEEEEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2181 QHTLSSFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2181 dGsI~I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
.|.+....+ ++-.+.....+|.+.++++.|.+....+.+|..
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~------------------------------------ 217 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS------------------------------------ 217 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc------------------------------------
Confidence 454444333 333344445569999999999999999998752
Q ss_pred CccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2259 RFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|..+.+||+.-.+-+.-...+|...|..+..-+--+.|++++.||.|.+|+.+
T Consensus 218 -----d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 218 -----DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred -----cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 56789999976655555455899999999998888999999999999999954
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.3e-05 Score=92.97 Aligned_cols=258 Identities=14% Similarity=0.143 Sum_probs=152.9
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC----------CCceEEEeccCCccccccccCC------C
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ----------DTTILLWRIHRAFTSRTGTIEP------S 2081 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~----------DGTVrVWDl~tg~~i~t~~~~~------~ 2081 (2342)
++|.|.|..+++.+.++..-..+-- + +||||+.|+.+.. +..|.|||..+.+...++.... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999998888765444332 4 9999998887655 7899999999987776653211 2
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEE-EEEecCCCEEEEE--------eCCCcEEEEECC-C
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC-CCVSSDLGVVVSC--------SDSSDLLLHSIR-R 2151 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~-VafSPDg~lLaSG--------S~DGtIrIWDLr-T 2151 (2342)
.....+++++||+.+.+...+.. ..+..+......+.. +.. |++..++.. +.||......+. +
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~------~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPS------PAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred CccceEEECCCCCEEEEecCCCC------CEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCC
Confidence 23447788999998877664411 011111111111111 111 333333333 233333332222 1
Q ss_pred CeE-EEE---EecCC----cEEEEEec-CCcEEEEEeCCCeEEEEEeCCceeee------ecC-----C-CCCCeEEEEE
Q 000085 2152 GRL-IRR---LVGVD----AHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVAR------AKL-----P-LSGSIGCMEI 2210 (2342)
Q Consensus 2152 Gkl-Irs---L~gh~----vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s------~~~-----~-Hs~~ItsLaf 2210 (2342)
|+. ..+ +.... .+- .+++ ||+.+ |-...|.+.+.++.+..... ... . ..+.+.-+++
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~-~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLV-WPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred CceEEeeeeeecCCccccccCC-ceEcCCCcEE-EEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 221 111 11100 001 3355 66544 44445999888864321111 000 0 2344455999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+++|+.+++....+. .|.+.. ..+.|.++|..+++.+..+..+ ..+.
T Consensus 256 ~~dg~~lyV~~~~~~--------~~thk~-----------------------~~~~V~ViD~~t~kvi~~i~vG--~~~~ 302 (352)
T TIGR02658 256 HRARDRIYLLADQRA--------KWTHKT-----------------------ASRFLFVVDAKTGKRLRKIELG--HEID 302 (352)
T ss_pred cCCCCEEEEEecCCc--------cccccC-----------------------CCCEEEEEECCCCeEEEEEeCC--Ccee
Confidence 999999887542211 011111 2468999999999999999854 4789
Q ss_pred EEEEecCCC-EEEEEe-CCCcEEEEeCCCCC
Q 000085 2291 ALALNKDNT-NLLVST-ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2291 sLafSPDG~-~LaSGS-sDGsIrVWDi~sLs 2319 (2342)
.++++||++ +|++.. .++.|.|+|..+..
T Consensus 303 ~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 303 SINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred eEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999999999 887665 68899999976663
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-07 Score=114.31 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+.-+.|-|..-+|++++..|.++--|+.+|+.+..+..-.+.+..++-+|-...+-+|...|+|.+|.....
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-------- 283 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-------- 283 (545)
T ss_pred hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--------
Confidence 345888998889999999999999999999999999888899999999999999999999999999987763
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
.++..+.+|.++|.++++.++|.+++|.+.|..|+|||++.-..+.++
T Consensus 284 --------------------------------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 284 --------------------------------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred --------------------------------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 345556789999999999999999999999999999999988776666
Q ss_pred ec-CCcEEEEEecCCcEEEEEeCCCeEEEEEe--CCc-eeeeecCC--CCCCeEEEEEccCCCEEEEEe
Q 000085 2159 VG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTL--NGV-LVARAKLP--LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2159 ~g-h~vssLSfSpDG~IlVwdssdGsI~I~dl--nG~-~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.. +....+++|..|-+.+. ....+.+|.- ++. ........ ..+.|..+.|.|-...|-+|.
T Consensus 332 ~tp~~a~~ls~SqkglLA~~--~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 332 RTPHPASNLSLSQKGLLALS--YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred ecCCCccccccccccceeee--cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 54 66788888888865432 2345667753 211 11111122 346899999999877776664
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9e-07 Score=109.57 Aligned_cols=197 Identities=18% Similarity=0.169 Sum_probs=139.5
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCC--CEEEEEEcCCcEEEEecCCc-----
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDK--EIITGGHVDGSIKLLTSDGA----- 2028 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDG--klLASGS~DGsIrVWDl~tg----- 2028 (2342)
+|..+++|++|..+-||+.-. ....+..+.++...+.++.|-|.. +++++|..|..|+|+|++..
T Consensus 61 dG~lL~SGSDD~r~ivWd~~~--------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~ 132 (758)
T KOG1310|consen 61 DGELLASGSDDTRLIVWDPFE--------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM 132 (758)
T ss_pred CCCEEeecCCcceEEeecchh--------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc
Confidence 578899999999999998532 122345667777777888888854 49999999999999999842
Q ss_pred -----ccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC
Q 000085 2029 -----KTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2029 -----kll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
.....+..|++.|..++..|++ +.+.++|.||+++-+|++..... .|++...
T Consensus 133 d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c----------------~p~~~~~------ 190 (758)
T KOG1310|consen 133 DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC----------------NPDEDCP------ 190 (758)
T ss_pred ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC----------------Ccccccc------
Confidence 2345567899999999999998 88999999999999999873211 0111000
Q ss_pred CccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCC--------Ce----------EEEEEec-C-
Q 000085 2103 KSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRR--------GR----------LIRRLVG-V- 2161 (2342)
Q Consensus 2103 ~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrT--------Gk----------lIrsL~g-h- 2161 (2342)
..+..+...--...|+.++|. ..+++.|+.|-..++||.+. |. +++.+.. |
T Consensus 191 --------~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 191 --------SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred --------HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 000011111235578889986 56788999999999999542 11 2333321 1
Q ss_pred ------------CcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2162 ------------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2162 ------------~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
..+.++|+|+|.-++.+.....|++|+++
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 13678999999988887777788888886
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.5e-06 Score=102.77 Aligned_cols=175 Identities=12% Similarity=0.138 Sum_probs=127.8
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcccceeccc---CCCCeEEEEec--------------------CCCCEEEEEeCCCce
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASG---HCAPVTCLALS--------------------SDSNFLVTGSQDTTI 2062 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgkll~tL~G---Ht~~VtcLAfS--------------------PDG~~LaSGS~DGTV 2062 (2342)
|.+.++|....||.+++|+...++..+.+.. -++..+|..|. .|-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456889889999999999998876655432 22344455552 011123333333444
Q ss_pred EEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS 2142 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG 2142 (2342)
.++++..++... ...-.+|.+.|+++.++.+...+.|++.|+
T Consensus 83 ~~ys~~~g~it~--------------------------------------~~st~~h~~~v~~~~~~~~~~ciyS~~ad~ 124 (541)
T KOG4547|consen 83 LLYSVAGGEITA--------------------------------------KLSTDKHYGNVNEILDAQRLGCIYSVGADL 124 (541)
T ss_pred EEEEecCCeEEE--------------------------------------EEecCCCCCcceeeecccccCceEecCCce
Confidence 444433321110 011246999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccC-----CC
Q 000085 2143 DLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLD-----GH 2215 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPD-----Gk 2215 (2342)
.+..|+...++.++.+.... ...++++|||.+++.+ .++|.+|+++.+.+...+.+|.++|+++.|.-+ |.
T Consensus 125 ~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 125 KVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred eEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence 99999999999998887643 6889999999998876 468999999988888888889999999999877 77
Q ss_pred EEEEE
Q 000085 2216 SALIG 2220 (2342)
Q Consensus 2216 ~LaSG 2220 (2342)
+++++
T Consensus 203 ~vLss 207 (541)
T KOG4547|consen 203 YVLSS 207 (541)
T ss_pred eeeec
Confidence 77765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-06 Score=103.79 Aligned_cols=240 Identities=15% Similarity=0.112 Sum_probs=150.5
Q ss_pred cCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC-Cce
Q 000085 2036 GHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPI 2113 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l 2113 (2342)
.|...-+.+..+|||+|+ +||..--.|++||+.+....... ......|.....+-|-...+....|..+..... +.-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-hlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-HLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-cccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 477888999999999986 56777889999999874322111 111122333333333333333223322211110 000
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
..+. -...-..++++.-..-++.++....|+-+++..|+.+..+... ++.++.+++...+++++..+|.+..|+...
T Consensus 128 y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 128 YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 0000 0111233444432333455555568999999999999887654 578888999889999999999999998753
Q ss_pred ceee-eec-----CCCCC-----CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCc
Q 000085 2192 VLVA-RAK-----LPLSG-----SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRF 2260 (2342)
Q Consensus 2192 ~~L~-s~~-----~~Hs~-----~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~i 2260 (2342)
+... ... ..|.+ .|+++.|+.||-.+++|+.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-------------------------------------- 248 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-------------------------------------- 248 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc--------------------------------------
Confidence 2211 111 11333 4999999999999998863
Q ss_pred cCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC
Q 000085 2261 DFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2261 as~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+|.|.|||+++.+++..-..+-.-+|..+.|.+.+ +--++......++|||-...
T Consensus 249 ---~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 249 ---TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTG 304 (703)
T ss_pred ---CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccC
Confidence 57799999999998887764556789999997753 22334445568999995433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.3e-05 Score=105.59 Aligned_cols=250 Identities=14% Similarity=0.103 Sum_probs=150.0
Q ss_pred EEEcCC-CCEEEEEEcCCcEEEEecCCcccceeccc--------------CCCCeEEEEecCCCCEEEEE-eCCCceEEE
Q 000085 2002 VSITHD-KEIITGGHVDGSIKLLTSDGAKTLETASG--------------HCAPVTCLALSSDSNFLVTG-SQDTTILLW 2065 (2342)
Q Consensus 2002 VafSpD-GklLASGS~DGsIrVWDl~tgkll~tL~G--------------Ht~~VtcLAfSPDG~~LaSG-S~DGTVrVW 2065 (2342)
++++++ ++++++-+.++.|++||..+ +.+..+.+ +-..-..++++++++.|+.+ ...+.|+++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 677764 66788888889999999764 33332221 11235788999988866554 445789999
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcE
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtI 2144 (2342)
|..++. +.++... +.... ..++ +. ...... -...++++|+| ++.++++.+.++.|
T Consensus 652 d~~~~~-V~tlag~---G~~g~--~~~g---------g~-----~~~~~~----ln~P~gVa~dp~~g~LyVad~~~~~I 707 (1057)
T PLN02919 652 DFVNET-VRTLAGN---GTKGS--DYQG---------GK-----KGTSQV----LNSPWDVCFEPVNEKVYIAMAGQHQI 707 (1057)
T ss_pred ecCCCE-EEEEecc---CcccC--CCCC---------Ch-----hhhHhh----cCCCeEEEEecCCCeEEEEECCCCeE
Confidence 987642 1111000 00000 0000 00 000000 12235889999 56667788888999
Q ss_pred EEEECCCCeEEEEEec-----------------CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeec--------
Q 000085 2145 LLHSIRRGRLIRRLVG-----------------VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAK-------- 2198 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~g-----------------h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~-------- 2198 (2342)
++||..++... .+.+ .....++++++|. +++.+..++.|++|++.+.......
T Consensus 708 ~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 708 WEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 99999877543 2211 1135689999987 7778888899999998632211000
Q ss_pred ----CC---------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2199 ----LP---------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2199 ----~~---------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
.+ .-....+++++++|..+++. ..++
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD-----------------------------------------s~N~ 825 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD-----------------------------------------SYNH 825 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeCCCcEEEEE-----------------------------------------CCCC
Confidence 00 00112345555555433322 1367
Q ss_pred eEEEEECCCCeEEEEEecC------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2266 SICFLDLHTLKVFHVLKLG------------EGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lg------------Hs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.|++||..++........+ +-.....|+++++|+.+++-+.++.|++||..+.
T Consensus 826 rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 826 KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 8999999887765433211 1125788999999998888899999999997554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-06 Score=105.37 Aligned_cols=219 Identities=12% Similarity=0.074 Sum_probs=147.8
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcc---------------cceecccCCCCeEEEEecCCCCEEEEEeCCCceEE
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAK---------------TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILL 2064 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgk---------------ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrV 2064 (2342)
.|+.|+....+||+|+.||.++|..+.+.. .-+++.||.+.|.-+.|+.+.+.|-|...+|.|.|
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 579999999999999999999999775421 12578999999999999999999999999999999
Q ss_pred EeccCCcccccc-ccCCCCCCccccccCCCCCceeecCCCcccc-ccCCc---eEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2065 WRIHRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKSRRR-RIEGP---IHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2065 WDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~~~-~i~~~---l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
|-+-.+.-.... .....+.|.+++|..||..+.....|+.... .+.+. -..++| .....+.|++|...++.+-
T Consensus 98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhh
Confidence 999887644443 3344556788999999998877666654331 11100 011222 1234688999999988888
Q ss_pred CCCcEEEEECCCC-------eEEEEEe------cCCcEEEEE--------ecCCcEEEEEeCCCeEEEEEeCC-ceeeee
Q 000085 2140 DSSDLLLHSIRRG-------RLIRRLV------GVDAHAVSL--------SSEGVIMTWNKLQHTLSSFTLNG-VLVARA 2197 (2342)
Q Consensus 2140 ~DGtIrIWDLrTG-------klIrsL~------gh~vssLSf--------SpDG~IlVwdssdGsI~I~dlnG-~~L~s~ 2197 (2342)
..|.+.++|.... .+.-... ++.+..+.| -||...++....+|.+++..-.. ......
T Consensus 176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~ 255 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV 255 (1189)
T ss_pred cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence 9999999996532 1111111 122222222 34666666666677665544321 111111
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
...-.|....|+++|..|++++.
T Consensus 256 --dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 256 --DTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred --ecccEeecceecCCCcEEEEccC
Confidence 12357888999999999998874
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-05 Score=102.91 Aligned_cols=210 Identities=15% Similarity=0.035 Sum_probs=127.3
Q ss_pred EEEcCCCCE--E-EEEEcCC--cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-----CCceEEEeccCCc
Q 000085 2002 VSITHDKEI--I-TGGHVDG--SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-----DTTILLWRIHRAF 2071 (2342)
Q Consensus 2002 VafSpDGkl--L-ASGS~DG--sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-----DGTVrVWDl~tg~ 2071 (2342)
-.|||||+. + ++...+| .|++.++.+|+..+ +....+.....+|||||+.|+..+. |..+.+|++..+.
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 589999974 2 2443444 57777888775433 2223444567899999998886553 3344557766531
Q ss_pred --cccccccCCCCCCccccccCCCCCceeecC-CCc-cccc--c---CCceEEecCCCCCeEEEEEecCCCEEEEEeCC-
Q 000085 2072 --TSRTGTIEPSSGMGTPGNSIGSSTPANASA-DKS-RRRR--I---EGPIHVLRGHHREILCCCVSSDLGVVVSCSDS- 2141 (2342)
Q Consensus 2072 --~i~t~~~~~~~~V~svs~SpDG~~Las~s~-D~s-~~~~--i---~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D- 2141 (2342)
.................|+|||+.++.... ++. ..|. . ......+..+...+....|+|||+.|+..+.+
T Consensus 269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 111122122233456789999998866543 221 2222 1 12244455555677889999999988876543
Q ss_pred --CcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEccC
Q 000085 2142 --SDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2142 --GtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPD 2213 (2342)
..|.+||+.+++....... ......+|+|||+.+++.... ..++++++.+....... ...+.+...+|+|-
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 3699999998876543333 235678999999988775432 45777777664433222 13344556666654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.6e-06 Score=104.16 Aligned_cols=185 Identities=12% Similarity=0.204 Sum_probs=134.6
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEE--------------------cCCCCEEEEEEcC
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSI--------------------THDKEIITGGHVD 2017 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~Vaf--------------------SpDGklLASGS~D 2017 (2342)
.+.+...+|+.+|+|+...+....++ ......... +.+..| +.|...++-|...
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~--~p~~~~s~t----~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEF--APIASLSGT----CTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeee--ccchhccCc----ceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 44566778899999986653222222 111111111 122222 2344588999999
Q ss_pred CcEEEEecCCcccceecc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2018 GSIKLLTSDGAKTLETAS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
|.|.+|++..|+....+. +|.+.|+++.++.+-..|.|++.|+.+..|+.....
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~------------------------ 135 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV------------------------ 135 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce------------------------
Confidence 999999999999887775 599999999999999999999999999999998742
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecC--
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSE-- 2171 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpD-- 2171 (2342)
.+....+....+.+++++||+..+++++ +.|++||+.+++.+.+|.+|. ++.++|.-+
T Consensus 136 ----------------~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 136 ----------------IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID 197 (541)
T ss_pred ----------------eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence 2234456667788999999999999888 589999999999999999986 667777655
Q ss_pred ---CcEEEEEe-CCCeEEEEEeC
Q 000085 2172 ---GVIMTWNK-LQHTLSSFTLN 2190 (2342)
Q Consensus 2172 ---G~IlVwds-sdGsI~I~dln 2190 (2342)
|..++... ...-+.+|-+.
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ccccceeeeccccccceeEEEEE
Confidence 55555442 22335556554
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.9e-06 Score=108.95 Aligned_cols=184 Identities=17% Similarity=0.183 Sum_probs=141.4
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC----CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA----PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~----~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
+.-+.+.++.++.++.+-+||...+.....+..... ...-+-++++.-++++|+--+.|.+|+.....
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-------- 166 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-------- 166 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--------
Confidence 445667888888999999999988766655543221 12223456677899999999999999987310
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE-EE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR-RL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr-sL 2158 (2342)
.+. .+.||.+.|..+.++-||.+++|.|.|.++++|++.+++... +.
T Consensus 167 -------------------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~ 214 (967)
T KOG0974|consen 167 -------------------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG 214 (967)
T ss_pred -------------------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc
Confidence 111 478999999999999999999999999999999999988776 55
Q ss_pred ecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2159 VGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2159 ~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
-+|. +..+++.++ .++....+.+.++|..++..+..........|+.++..++...++|++.|+....+
T Consensus 215 fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred ccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence 5565 567888888 45555678899999998877773332235689999999999999999999885433
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.5e-05 Score=94.34 Aligned_cols=291 Identities=15% Similarity=0.133 Sum_probs=148.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..+..++.++.+..++..+|. ..|.+.-. ..+.. ... .++..++.++.+|.++.+|..+|+.+.....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~-----~~~~~--~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK--RLWRVDLD-----ERLSG--GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc--EeeeecCC-----CCccc--ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence 4455556666778888866643 34533211 01111 122 2466777888899999999999988765442
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCC----CCccccccCCCCCceeecC----------C
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS----GMGTPGNSIGSSTPANASA----------D 2102 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~----~V~svs~SpDG~~Las~s~----------D 2102 (2342)
. +.+.+.-.. .+..++.++.|+.+..||..+++...+....... ....... .++ .+..+.. +
T Consensus 134 ~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~-~v~~~~~~g~v~ald~~t 209 (377)
T TIGR03300 134 S-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADG-GVLVGFAGGKLVALDLQT 209 (377)
T ss_pred C-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECC-EEEEECCCCEEEEEEccC
Confidence 2 222221111 3457777888999999999988655443111100 0000001 111 2222222 2
Q ss_pred CccccccCCceEEecCCCC-----Ce-EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEE
Q 000085 2103 KSRRRRIEGPIHVLRGHHR-----EI-LCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2103 ~s~~~~i~~~l~~L~GHs~-----~V-t~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlV 2176 (2342)
+...|.... ..-.+... .+ .+..+ .+..++.++.+|.++.||..+|+.+...........+ .++..++
T Consensus 210 G~~~W~~~~--~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vy 283 (377)
T TIGR03300 210 GQPLWEQRV--ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLY 283 (377)
T ss_pred CCEeeeecc--ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEE
Confidence 222222110 00000000 00 01111 3567888889999999999999887765422211111 1222223
Q ss_pred EEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccccccc
Q 000085 2177 WNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSV 2255 (2342)
Q Consensus 2177 wdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ 2255 (2342)
....+|.++.++.. |..+-...........+..+ .+..+++++
T Consensus 284 v~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~---------------------------------- 327 (377)
T TIGR03300 284 VTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD---------------------------------- 327 (377)
T ss_pred EECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe----------------------------------
Confidence 33345555555553 32221110000111111122 244555553
Q ss_pred CCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2256 DNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2256 ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVW 2313 (2342)
.+|.|+++|..+++.+..+. .+...+..--...++ .|+.++.||.|+.|
T Consensus 328 -------~~G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 -------FEGYLHWLSREDGSFVARLK-TDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred -------CCCEEEEEECCCCCEEEEEE-cCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 26789999999999999888 334333222222233 58899999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00036 Score=85.12 Aligned_cols=260 Identities=15% Similarity=0.142 Sum_probs=166.0
Q ss_pred CCcEEEEecCCc--cc-ceecccCCCCeEEEEecCCCCEEEEEeCC---CceEEEeccC--Ccccccc-ccCCCCCCccc
Q 000085 2017 DGSIKLLTSDGA--KT-LETASGHCAPVTCLALSSDSNFLVTGSQD---TTILLWRIHR--AFTSRTG-TIEPSSGMGTP 2087 (2342)
Q Consensus 2017 DGsIrVWDl~tg--kl-l~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GTVrVWDl~t--g~~i~t~-~~~~~~~V~sv 2087 (2342)
+.-|++|++++. +. ...+-.+.+.++-|+|+|++++|+++-.+ |.|..+.++. |.....- ......+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998743 22 12234577889999999999999998654 7788887775 3221111 11222334778
Q ss_pred cccCCCCCceeecCCCc--cccccC-----CceEEecCCCCC----------eEEEEEecCCCEEEEEeC-CCcEEEEEC
Q 000085 2088 GNSIGSSTPANASADKS--RRRRIE-----GPIHVLRGHHRE----------ILCCCVSSDLGVVVSCSD-SSDLLLHSI 2149 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s--~~~~i~-----~~l~~L~GHs~~----------Vt~VafSPDg~lLaSGS~-DGtIrIWDL 2149 (2342)
+++++|+++.+...... ....+. ........|.+. +.+..|.|++++|++++. --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 89999998876654422 222111 111122234444 888999999999988864 237899999
Q ss_pred CCCeEEEEE-----ecCCcEEEEEecCCcEEE-EEeCCCeEEEEEeCC--ceeeeec--------CCCCCCeEEEEEccC
Q 000085 2150 RRGRLIRRL-----VGVDAHAVSLSSEGVIMT-WNKLQHTLSSFTLNG--VLVARAK--------LPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2150 rTGklIrsL-----~gh~vssLSfSpDG~IlV-wdssdGsI~I~dlnG--~~L~s~~--------~~Hs~~ItsLafSPD 2213 (2342)
..|.+...- .+.+.+.+.|+|+|++.. ..--+++|.+|..++ ..+.... +.-..+..+|.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 987654322 234578999999998754 344567888888865 2322221 113457788999999
Q ss_pred CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CCe--EEEEEecCCCCCe
Q 000085 2214 GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TLK--VFHVLKLGEGQDI 2289 (2342)
Q Consensus 2214 Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tgk--~L~tL~lgHs~~I 2289 (2342)
|++|.+.- .+. .+|.++.+. +++ .+.... .++...
T Consensus 255 GrFLYasN-Rg~---------------------------------------dsI~~f~V~~~~g~L~~~~~~~-teg~~P 293 (346)
T COG2706 255 GRFLYASN-RGH---------------------------------------DSIAVFSVDPDGGKLELVGITP-TEGQFP 293 (346)
T ss_pred CCEEEEec-CCC---------------------------------------CeEEEEEEcCCCCEEEEEEEec-cCCcCC
Confidence 99999662 111 134444432 222 122222 455567
Q ss_pred EEEEEecCCCEEEEEeCC-CcEEEEeCCC
Q 000085 2290 TALALNKDNTNLLVSTAD-KQLIVFTDPA 2317 (2342)
Q Consensus 2290 tsLafSPDG~~LaSGSsD-GsIrVWDi~s 2317 (2342)
+.+.|+++|++|++++.| ..|.||..+.
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 899999999999998765 4688888543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4e-05 Score=95.96 Aligned_cols=254 Identities=11% Similarity=0.074 Sum_probs=156.6
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc-----------CCcEEEE
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV-----------DGSIKLL 2023 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~-----------DGsIrVW 2023 (2342)
|.|.++++--.. -|.+|-|+. +.+...|...++ ..+.|||..++|++-+. ...++||
T Consensus 220 P~GTYL~t~Hk~-GI~lWGG~~--------f~r~~RF~Hp~V---q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 220 PKGTYLVTFHKQ-GIALWGGES--------FDRIQRFYHPGV---QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred CCceEEEEEecc-ceeeecCcc--------HHHHHhccCCCc---eeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 456666654332 366787654 223333333344 44999999999998652 2579999
Q ss_pred ecCCcccceeccc--CCCCeE-EEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeec
Q 000085 2024 TSDGAKTLETASG--HCAPVT-CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANAS 2100 (2342)
Q Consensus 2024 Dl~tgkll~tL~G--Ht~~Vt-cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s 2100 (2342)
|+.+|...+.+.. ....++ -..||.|++|++--.. .+|.|++....... ....-...++....|+|.++.+|.-.
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~ll-d~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLL-DKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeee-cccccCCccccCcccCCCcceEEEEc
Confidence 9999998887765 222333 3589999999987665 57888887663221 11223455677777888777665433
Q ss_pred CCCc-----------------------------cccccCC-----------------c-----eEEec---------CCC
Q 000085 2101 ADKS-----------------------------RRRRIEG-----------------P-----IHVLR---------GHH 2120 (2342)
Q Consensus 2101 ~D~s-----------------------------~~~~i~~-----------------~-----l~~L~---------GHs 2120 (2342)
.... ..|...+ + +..+. .-.
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 2200 0011100 0 00000 113
Q ss_pred CCeEEEEEecCCCEEEEEeC---CCcEEEEECCC----CeEEEEEecCCcEEEEEecCCcEEEEEe---CCCeEEEEEeC
Q 000085 2121 REILCCCVSSDLGVVVSCSD---SSDLLLHSIRR----GRLIRRLVGVDAHAVSLSSEGVIMTWNK---LQHTLSSFTLN 2190 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~---DGtIrIWDLrT----GklIrsL~gh~vssLSfSpDG~IlVwds---sdGsI~I~dln 2190 (2342)
..|...+|-|.|+.+++-+. ..++.+|-+.+ -+++..+.....+.+.|+|.|.+++... ..|.+..|+..
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 45677888999987765543 35788888773 2345555555578899999999887763 45788888876
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
-..+.....+.....+.+.|.|.|+|+++++.
T Consensus 526 ~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 526 YADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhhhhccCccccccccceECCCCCEEEEeee
Confidence 32222222222245678999999999999974
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0011 Score=81.11 Aligned_cols=222 Identities=9% Similarity=0.092 Sum_probs=143.5
Q ss_pred ceeEEEEEcCCCCEEEEEEc---CCcEEEEecCC--cccc----eecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEe
Q 000085 1997 RSSAVVSITHDKEIITGGHV---DGSIKLLTSDG--AKTL----ETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWR 2066 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~---DGsIrVWDl~t--gkll----~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWD 2066 (2342)
...+-++|+|+++.|.++.. +|.|-.|.++. |++. ..+.|+ +-+-++++++|++|++++. -|.|.++-
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 34566999999998887764 46777777764 5432 123333 3388999999999999875 47899998
Q ss_pred ccC-Ccccccc-ccCCCCC----------CccccccCCCCCceeec--CCCccccccC-Cc-----eEEecCCCCCeEEE
Q 000085 2067 IHR-AFTSRTG-TIEPSSG----------MGTPGNSIGSSTPANAS--ADKSRRRRIE-GP-----IHVLRGHHREILCC 2126 (2342)
Q Consensus 2067 l~t-g~~i~t~-~~~~~~~----------V~svs~SpDG~~Las~s--~D~s~~~~i~-~~-----l~~L~GHs~~Vt~V 2126 (2342)
+.. |...... ...+... +.+..+.|+++++++.. .|.+..++.. +. ...+ .-...-+.+
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi 196 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHI 196 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceE
Confidence 865 3222211 1222222 66778899999886654 3444333321 11 1111 234556889
Q ss_pred EEecCCCEEEEEe-CCCcEEEEECCCC-e---EEEEEec--------CCcEEEEEecCCcEEEEEeCC-CeEEEEEeC--
Q 000085 2127 CVSSDLGVVVSCS-DSSDLLLHSIRRG-R---LIRRLVG--------VDAHAVSLSSEGVIMTWNKLQ-HTLSSFTLN-- 2190 (2342)
Q Consensus 2127 afSPDg~lLaSGS-~DGtIrIWDLrTG-k---lIrsL~g--------h~vssLSfSpDG~IlVwdssd-GsI~I~dln-- 2190 (2342)
.|+|++++....+ .+++|.+|..... . .++++.. .....+.+++||+++...-+. ..|.+|.++
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999987655 6999999998773 2 2333321 125678899999988766443 478888875
Q ss_pred CceeeeecC--CCCCCeEEEEEccCCCEEEEEe
Q 000085 2191 GVLVARAKL--PLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2191 G~~L~s~~~--~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+..+..... .+........|+++|++|+++.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 333332221 2444578899999999999886
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00014 Score=86.50 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=105.6
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------cEEEEEecCC-------cEEEEEeCCCeEE
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---------AHAVSLSSEG-------VIMTWNKLQHTLS 2185 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---------vssLSfSpDG-------~IlVwdssdGsI~ 2185 (2342)
.-.-++||||+..+|.+...|+|+++|+.. ..+..+.... +..+.|-.-. .+++.+ ..|.++
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-YRGQLR 122 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-ccceee
Confidence 456899999999999999999999999864 4444443311 2222232211 222222 345555
Q ss_pred EEEeC-C-----ceeeeecCC--CCCCeEEEEEccCCCEEEEEeCCCCCCCCC-----cccccccCCCCCCccc-ccccc
Q 000085 2186 SFTLN-G-----VLVARAKLP--LSGSIGCMEISLDGHSALIGVNSSSTNNGS-----YDNIQGLNSKQSGTED-FDLAS 2251 (2342)
Q Consensus 2186 I~dln-G-----~~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i-----~d~Lw~l~~~~~~~ia-Fspd~ 2251 (2342)
-|-+. | +......+. +...|+++.++|..+.|++||.....+... ...-|++-+....... ...+.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~ 202 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED 202 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence 55442 1 111111111 467999999999999999887433322111 1223333332211110 00000
Q ss_pred ccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
. +.....+-.+|.+-+.+... ........|..|..||||+.|++...+|.|.+|++|++.
T Consensus 203 ~-------~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 203 D-------ITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred c-------ccccccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 0 00001123344444433222 111345679999999999999999999999999999996
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00026 Score=100.17 Aligned_cols=196 Identities=11% Similarity=0.085 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceeccc----------C-------CCCeEEEEecC-CCCEEEEEeCC
Q 000085 1999 SAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASG----------H-------CAPVTCLALSS-DSNFLVTGSQD 2059 (2342)
Q Consensus 1999 vt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~G----------H-------t~~VtcLAfSP-DG~~LaSGS~D 2059 (2342)
...++++++++.| ++-...+.|+++|..++. +.++.+ . -..-++++++| ++..+++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 3458899988754 444556789999987654 222211 0 11236799999 56677888889
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCC-EEEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSC 2138 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSG 2138 (2342)
+.|++||..++... . +..+|.... .++ ... ....-...+.++|+|+++ ++++-
T Consensus 705 ~~I~v~d~~~g~v~-~-------------~~G~G~~~~---~~g--------~~~-~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 705 HQIWEYNISDGVTR-V-------------FSGDGYERN---LNG--------SSG-TSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred CeEEEEECCCCeEE-E-------------EecCCcccc---CCC--------Ccc-ccccccCccEEEEeCCCCEEEEEE
Confidence 99999998775321 1 111110000 000 000 001123467899999988 45566
Q ss_pred eCCCcEEEEECCCCeEEEEEec-----------------------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLVG-----------------------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA 2195 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~g-----------------------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~ 2195 (2342)
+.++.|++||+.++.......+ .....++++++|.+++.+..++.|++|+..+..+.
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 6789999999987653211100 01357889999999999999999999998765443
Q ss_pred eecC-------------CCCCCeEEEEEccCCCEEEEEe
Q 000085 2196 RAKL-------------PLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2196 s~~~-------------~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
...- ..-.....|+++++|+.+++-+
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 2211 0123577889999998666543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00074 Score=84.86 Aligned_cols=228 Identities=16% Similarity=0.183 Sum_probs=145.5
Q ss_pred EEEEEcC----CcEEEEec--CCcccc--eecccCCCCeEEEEecCCCCEEEEEeC----CCceEEEeccCCc-cccccc
Q 000085 2011 ITGGHVD----GSIKLLTS--DGAKTL--ETASGHCAPVTCLALSSDSNFLVTGSQ----DTTILLWRIHRAF-TSRTGT 2077 (2342)
Q Consensus 2011 LASGS~D----GsIrVWDl--~tgkll--~tL~GHt~~VtcLAfSPDG~~LaSGS~----DGTVrVWDl~tg~-~i~t~~ 2077 (2342)
++.|+++ +.|++|++ +++++. ..+. -......++++|++++|+++.. ++.|..|++.... .+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L---- 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL---- 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE----
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee----
Confidence 4455555 68999988 344332 2222 2344577899999999999877 4688888876531 00
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRR-GRLI 2155 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrT-GklI 2155 (2342)
..+............++++|++++++++. .+|+|.++++.. |...
T Consensus 77 ---------------------------------~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~ 123 (345)
T PF10282_consen 77 ---------------------------------TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG 123 (345)
T ss_dssp ---------------------------------EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE
T ss_pred ---------------------------------EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc
Confidence 01111221234556789999999988876 589999999987 5443
Q ss_pred EE---Ee------------cCCcEEEEEecCCcEEE-EEeCCCeEEEEEeCCce--e---eeecCCCCCCeEEEEEccCC
Q 000085 2156 RR---LV------------GVDAHAVSLSSEGVIMT-WNKLQHTLSSFTLNGVL--V---ARAKLPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2156 rs---L~------------gh~vssLSfSpDG~IlV-wdssdGsI~I~dlnG~~--L---~s~~~~Hs~~ItsLafSPDG 2214 (2342)
.. +. ....+.+.++|||+.++ .+.....|.+|+++... + .....+.......++|+|+|
T Consensus 124 ~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg 203 (345)
T PF10282_consen 124 EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG 203 (345)
T ss_dssp EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS
T ss_pred eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc
Confidence 32 21 11257899999998554 46666789999996432 2 22233466778999999999
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CCe--EEEEEec---CC--
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TLK--VFHVLKL---GE-- 2285 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tgk--~L~tL~l---gH-- 2285 (2342)
+++++... .++.|.++++. ++. .+..+.. +.
T Consensus 204 ~~~Yv~~e----------------------------------------~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 204 KYAYVVNE----------------------------------------LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp SEEEEEET----------------------------------------TTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CEEEEecC----------------------------------------CCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 99987642 14567777766 332 2333321 11
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2286 GQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
......|+++|||++|+++. .++.|.+|++.
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 12578899999999998775 56789999973
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00068 Score=85.02 Aligned_cols=234 Identities=9% Similarity=0.023 Sum_probs=141.8
Q ss_pred EcCCCCEEEEEE----------cCCcEEEEecCCcccceecccCC-------CCeEEEEecCCCCEEEEEe-C-CCceEE
Q 000085 2004 ITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGHC-------APVTCLALSSDSNFLVTGS-Q-DTTILL 2064 (2342)
Q Consensus 2004 fSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GHt-------~~VtcLAfSPDG~~LaSGS-~-DGTVrV 2064 (2342)
+||||+.|+.+. .+..|.|||..+++.+..+.--. ..-..++++|||++|+... . +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 899999666554 47899999999999887776322 1234789999999998765 3 789999
Q ss_pred EeccCCccccccccCCCCC------CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEE-EEEec-CCCEEE
Q 000085 2065 WRIHRAFTSRTGTIEPSSG------MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC-CCVSS-DLGVVV 2136 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~------V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~-VafSP-Dg~lLa 2136 (2342)
.|+.+++.+.+.....+.. ......+.||..+.....+..... ......+.+....+.. -.|.+ +++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~--~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK--IKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE--EeeeeeecCCccccccCCceEcCCCcEEE
Confidence 9999987666553211111 111222344444433322211100 0011111111111100 03455 787777
Q ss_pred EEeCCCcEEEEECCCC-----eEEEEEec---------CCcEEEEEecCCcEEEEEeC----------CCeEEEEEeCCc
Q 000085 2137 SCSDSSDLLLHSIRRG-----RLIRRLVG---------VDAHAVSLSSEGVIMTWNKL----------QHTLSSFTLNGV 2192 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTG-----klIrsL~g---------h~vssLSfSpDG~IlVwdss----------dGsI~I~dlnG~ 2192 (2342)
.... |+|.+.|+... ..+..+.. .....++++++|..++.... .+.+.+++....
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 6666 99999996443 33332221 12345999999876665321 146888887643
Q ss_pred -eeeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2193 -LVARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2193 -~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
.+.... -...+..++++|||+ +|++.. + .++.|.|+
T Consensus 290 kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn--~--------------------------------------~s~~VsVi 327 (352)
T TIGR02658 290 KRLRKIE--LGHEIDSINVSQDAKPLLYALS--T--------------------------------------GDKTLYIF 327 (352)
T ss_pred eEEEEEe--CCCceeeEEECCCCCeEEEEeC--C--------------------------------------CCCcEEEE
Confidence 344333 345899999999999 666542 1 15679999
Q ss_pred ECCCCeEEEEEe
Q 000085 2271 DLHTLKVFHVLK 2282 (2342)
Q Consensus 2271 DL~Tgk~L~tL~ 2282 (2342)
|..+++.+.++.
T Consensus 328 D~~t~k~i~~i~ 339 (352)
T TIGR02658 328 DAETGKELSSVN 339 (352)
T ss_pred ECcCCeEEeeec
Confidence 999999999883
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00018 Score=92.61 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=110.2
Q ss_pred EEEEcCCCCE-EEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCC--ceEEEeccCCccc
Q 000085 2001 VVSITHDKEI-ITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDT--TILLWRIHRAFTS 2073 (2342)
Q Consensus 2001 ~VafSpDGkl-LASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DG--TVrVWDl~tg~~i 2073 (2342)
.-.|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+.+..|+|||+.|+ +.+.++ .|.++|+.++..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~- 269 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL- 269 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-
Confidence 4789999984 6644433 468899998886554333 455677789999998765 444444 455555544311
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SS--DLLLHSIR 2150 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDLr 2150 (2342)
..+..+........|+|||+.|+-.+. .| .|++.|+.
T Consensus 270 ----------------------------------------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 270 ----------------------------------------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred ----------------------------------------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 111222222234469999987765553 33 68888998
Q ss_pred CCeEEEEEecCCcEEEEEecCCcEEEEEeCC---------CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2151 RGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ---------HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2151 TGklIrsL~gh~vssLSfSpDG~IlVwdssd---------GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+|+..+.... ......|||||+.+++.... ..|.++++.+........ ........|+|||+.++..+
T Consensus 310 ~g~~~rlt~~-g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~--~~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 310 SGSVEQVVFH-GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA--NGVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred CCCeEeCccC-CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC--CCCcCCeEECCCCCEEEEEE
Confidence 8876443322 21235899999988887543 256777776554443322 22334688999999988765
Q ss_pred C
Q 000085 2222 N 2222 (2342)
Q Consensus 2222 ~ 2222 (2342)
.
T Consensus 387 ~ 387 (419)
T PRK04043 387 Y 387 (419)
T ss_pred c
Confidence 3
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0003 Score=86.95 Aligned_cols=172 Identities=14% Similarity=0.157 Sum_probs=121.3
Q ss_pred eeecCCCeEEecCCCceE--EEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCC-cEEEEecCCc
Q 000085 1952 FLFQHGKASASPASGTFL--RMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDG-SIKLLTSDGA 2028 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tI--RVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DG-sIrVWDl~tg 2028 (2342)
|...+|..++..|.++.. +.|.+. .....+.++++- ..+.-+++-++.|..|| .+-|+|..++
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~-----------~iqv~~~~~VrY---~r~~~~~e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGY-----------SIQVGKKGGVRY---RRIQVDPEGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCe-----------eEEcCCCCceEE---EEEccCCcceEEeccCCceEEEEecCCc
Confidence 445577788777776432 223221 112233444433 66777888888999999 8999999887
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+. ..+...-+.|.++..+++|++++.+.....+.+.|+.++...
T Consensus 393 e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~----------------------------------- 436 (668)
T COG4946 393 EV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR----------------------------------- 436 (668)
T ss_pred eE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-----------------------------------
Confidence 64 445556788999999999999999998889999999886321
Q ss_pred cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS----DLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWN 2178 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG----tIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwd 2178 (2342)
..-+...+-|+..+|+|++++++-+--+| .|+++|+.+++......... ..+-+|.|||+.+.+-
T Consensus 437 -----~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 437 -----LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred -----EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 11133456789999999999999776665 68999998887665443322 3456788899877654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.3e-06 Score=112.75 Aligned_cols=182 Identities=16% Similarity=0.107 Sum_probs=125.2
Q ss_pred cCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1994 SGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1994 ~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
.++..|.++.-+|...+.++|+.||+|++|....++.+..+. +....|+.+.|+.+|+.+..+..||.+.+|......
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~- 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP- 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc-
Confidence 356677778888988999999999999999998888776553 233889999999999999999999999999987311
Q ss_pred ccccccCCCCCCccccccCCCCCceeec--CC--CccccccCC---ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANAS--AD--KSRRRRIEG---PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLL 2145 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s--~D--~s~~~~i~~---~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIr 2145 (2342)
......|..+...+.|-. ..+++.+ .+ .+..|++.. .-.+-..|.+.++|+++-|..++++|||.+|.|+
T Consensus 2285 -~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2285 -YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred -eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 111122222222222221 1222111 11 223355421 1122288999999999999999999999999999
Q ss_pred EEECCCCeEEEEEec--CCcEEEEEecCCcEEEEEe
Q 000085 2146 LHSIRRGRLIRRLVG--VDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2146 IWDLrTGklIrsL~g--h~vssLSfSpDG~IlVwds 2179 (2342)
+||++..++++++.. .+.+.+..+..|.+.+|..
T Consensus 2362 l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred EeehHHHHHHHHhhhhhhhheeeccCcccceEEEEc
Confidence 999999888777654 1234455555555555554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00012 Score=91.58 Aligned_cols=263 Identities=12% Similarity=0.069 Sum_probs=154.6
Q ss_pred eEEEEEcCCCCEEEEEEc---------------CCcEEEEecCCcccceecccCCCC--eE-EEEecCCCCEEEEEeCCC
Q 000085 1999 SAVVSITHDKEIITGGHV---------------DGSIKLLTSDGAKTLETASGHCAP--VT-CLALSSDSNFLVTGSQDT 2060 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~---------------DGsIrVWDl~tgkll~tL~GHt~~--Vt-cLAfSPDG~~LaSGS~DG 2060 (2342)
|.-+.|+|.+++|++=+. ++.+.|||..+|.++..+.+-..+ .+ -+.|+-++++++-. -..
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~ 152 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGS 152 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccC
Confidence 344889999999998653 335999999999999888776655 55 67788777766544 234
Q ss_pred ceEEEeccCCccccccccCCCCCCccccccCCC-----------------------------------------------
Q 000085 2061 TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS----------------------------------------------- 2093 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG----------------------------------------------- 2093 (2342)
.+.|+++......+.+......++....++|.|
T Consensus 153 sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~ 232 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV 232 (561)
T ss_pred eEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec
Confidence 577777522111111111112223333333321
Q ss_pred --CCceeecCCCc------------ccccc-CCceEEecCCCCCeEEEEEecCCCEEEE--EeCCCcEEEEECCCCeEEE
Q 000085 2094 --STPANASADKS------------RRRRI-EGPIHVLRGHHREILCCCVSSDLGVVVS--CSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2094 --~~Las~s~D~s------------~~~~i-~~~l~~L~GHs~~Vt~VafSPDg~lLaS--GS~DGtIrIWDLrTGklIr 2156 (2342)
..+.+...... ...++ +..+....+-.++|...+|.|.++.+++ |-.+-.+.++|++.. ...
T Consensus 233 ~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 233 LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF 311 (561)
T ss_pred CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE
Confidence 11111000000 00000 0111112244678999999998877654 457889999999765 555
Q ss_pred EEecCCcEEEEEecCCcEEEEEe---CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2157 RLVGVDAHAVSLSSEGVIMTWNK---LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2157 sL~gh~vssLSfSpDG~IlVwds---sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
.+....-.-+.|||.+++++... ..|.+.+|+..|+......+ .....+-+.|+|||+++.+...+...
T Consensus 312 ~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~~~n~s~~~wspd~qF~~~~~ts~k~------- 383 (561)
T COG5354 312 YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-NGLNTSYCDWSPDGQFYDTDTTSEKL------- 383 (561)
T ss_pred ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe-ecCCceEeeccCCceEEEecCCCccc-------
Confidence 55444456678999999887643 34788899988765544221 12234456799999999876421110
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
-.|..|.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 384 ----------------------------~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 384 ----------------------------RVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----------------------------ccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 02788999998654322 345567777777666655544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00045 Score=96.38 Aligned_cols=219 Identities=17% Similarity=0.100 Sum_probs=133.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEE----ecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLL----TSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVW----Dl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.+..+.+-++...++.+..+|.|.++ +..+.. +.....-...|.|++||||+..|+..+.++++.+-+-. ...+
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i 154 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPI 154 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEE
Confidence 34457888898888888999999999 444332 22222345689999999999999999999998876432 1111
Q ss_pred ccc--ccCC--CCCCccccccCCCCCceeecCCCc--c-ccccCCc---eEEecCCCCCeEEEEEecCCCEEEEEeC---
Q 000085 2074 RTG--TIEP--SSGMGTPGNSIGSSTPANASADKS--R-RRRIEGP---IHVLRGHHREILCCCVSSDLGVVVSCSD--- 2140 (2342)
Q Consensus 2074 ~t~--~~~~--~~~V~svs~SpDG~~Las~s~D~s--~-~~~i~~~---l~~L~GHs~~Vt~VafSPDg~lLaSGS~--- 2140 (2342)
... .... ......+.|......+- |...+. + ..+...+ ...+. +.+.-..++|-.||.++|+.+.
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~-Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFH-GSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccC-cchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 111 0000 00111111111111110 000000 0 0000001 12233 5566778999999999987764
Q ss_pred C---CcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeC---CCeEEEEEeCCceeeeecCC---CCCCeEEEE
Q 000085 2141 S---SDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKL---QHTLSSFTLNGVLVARAKLP---LSGSIGCME 2209 (2342)
Q Consensus 2141 D---GtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdss---dGsI~I~dlnG~~L~s~~~~---Hs~~ItsLa 2209 (2342)
+ ..++||+- .|.+..+-+... ...++|-|.|.+++...+ ...|..|.-||-.-...... ....|..+.
T Consensus 233 ~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 233 TGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred CCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEE
Confidence 2 47999995 476554443222 367899999998887654 34678888888555444433 456899999
Q ss_pred EccCCCEEEEEe
Q 000085 2210 ISLDGHSALIGV 2221 (2342)
Q Consensus 2210 fSPDGk~LaSGS 2221 (2342)
|++|+..|+...
T Consensus 312 Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 312 WNSDSEILAVWL 323 (928)
T ss_pred ECCCCCEEEEEe
Confidence 999999999764
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=108.43 Aligned_cols=221 Identities=10% Similarity=0.104 Sum_probs=158.7
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc-CCc
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI-EGP 2112 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i-~~~ 2112 (2342)
..|-..|.|+.-+|...+-+||+.||.|++|....+..+..........++...|+..|+.......|+. ..|.. .++
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence 4456789999999999999999999999999999888777764444588889999999988877666654 44655 456
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCC---CeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCS---DSSDLLLHSIRR---GRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSS 2186 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS---~DGtIrIWDLrT---GklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I 2186 (2342)
....+.|....+.+.|-. ..+++++ .++.+.+||..- ..++.+-..++.+++++-|...+++.++++|.+++
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 777888999988888865 5566654 578999999642 24556555556889999999999999999999999
Q ss_pred EEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2187 FTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
|++..+.+. |.-+. +. ...++++|+ ..|.
T Consensus 2363 ~D~rqrql~-----h~~~~----~~-~~~~f~~~s-----------------------------------------s~g~ 2391 (2439)
T KOG1064|consen 2363 FDIRQRQLR-----HTFQA----LD-TREYFVTGS-----------------------------------------SEGN 2391 (2439)
T ss_pred eehHHHHHH-----HHhhh----hh-hhheeeccC-----------------------------------------cccc
Confidence 998765554 33222 33 455666654 2577
Q ss_pred EEEEECCCCeEEEEEecCCCCC----e--EEEEEecCCCEEEEEeCCCc
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQD----I--TALALNKDNTNLLVSTADKQ 2309 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~----I--tsLafSPDG~~LaSGSsDGs 2309 (2342)
|+||++.....+++++..|... . ..+... .+.+|.+|+.||+
T Consensus 2392 ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2392 IKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred eEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 9999998888888777444210 1 111122 2345777877764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00086 Score=86.50 Aligned_cols=220 Identities=9% Similarity=0.007 Sum_probs=128.4
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCC---CceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQD---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
..|.+-|.+.... +.+.... .+....|+|||+. ++..+.+ ..|.++|+.++..
T Consensus 169 ~~l~~~d~dg~~~-~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--------------------- 225 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--------------------- 225 (419)
T ss_pred ceEEEECCCCCce-eEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------------------
Confidence 4566656655443 3333233 7788999999985 5544443 4577777766421
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCC--CcEEEEECCCCeEEEEEecCC-cEEEEEe
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDS--SDLLLHSIRRGRLIRRLVGVD-AHAVSLS 2169 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~D--GtIrIWDLrTGklIrsL~gh~-vssLSfS 2169 (2342)
..+....+...+..|+|||+.++ +.+.+ ..|.++|+.++...+...... .....|+
T Consensus 226 --------------------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 226 --------------------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFV 285 (419)
T ss_pred --------------------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEEC
Confidence 11122334455678999998665 34333 568888988876443322222 3456899
Q ss_pred cCCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2170 SEGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2170 pDG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
|||+.+++... .+ .|+++++.+......... +. ....|+|||++++..+......
T Consensus 286 PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~------------------- 343 (419)
T PRK04043 286 EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNE------------------- 343 (419)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcc-------------------
Confidence 99987776643 33 566667666544333321 11 2348999999998765211100
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEeCCCC
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD-K--QLIVFTDPAL 2318 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD-G--sIrVWDi~sL 2318 (2342)
+ ......|.+.|+.++.. ..+. .. .......|+|||+.|+..+.+ + .|.+.+..+.
T Consensus 344 ~-------------~~~~~~I~v~d~~~g~~-~~LT-~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 344 F-------------GKNTFNLYLISTNSDYI-RRLT-AN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred c-------------CCCCcEEEEEECCCCCe-EECC-CC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 0 00024688899988864 3343 12 233468899999988766543 2 3556665443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-05 Score=96.43 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=82.8
Q ss_pred EEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2014 GHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2014 GS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
.+....+.+|....+.+ .-+-||-..++.++|+||+++|+|+.+|..|+|-.......+..
T Consensus 128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies------------------ 188 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES------------------ 188 (390)
T ss_pred cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh------------------
Confidence 34556677777766433 44568999999999999999999999999999877655321111
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g 2160 (2342)
-.-||+.-|..++..+ +..|+|||.|++|++||+++|+++.++..
T Consensus 189 ---------------------fclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 189 ---------------------FCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ---------------------hccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccch
Confidence 1358999999999865 45589999999999999999999877654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.5e-06 Score=101.39 Aligned_cols=206 Identities=19% Similarity=0.257 Sum_probs=134.5
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
+..+.||+..|..++--.+.+-++++|.|.||++|.++...-. ..+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------------------------------~~ts 774 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------------------------------IGTS 774 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------------------------------cccc
Confidence 4567899999999988778899999999999999999763100 0011
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec---CC--cEEEEEe-cCCcEEEEE-eCCCe
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG---VD--AHAVSLS-SEGVIMTWN-KLQHT 2183 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g---h~--vssLSfS-pDG~IlVwd-ssdGs 2183 (2342)
.+..+++.|..+|..+.|-.+.+.++++ ||.|.+||.--|+.+..+.. ++ ....+.- -+..+++.+ ....+
T Consensus 775 aCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST 852 (1034)
T KOG4190|consen 775 ACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST 852 (1034)
T ss_pred eeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhh
Confidence 3455778999999999999998888765 78999999887777664432 11 2222322 245555554 33455
Q ss_pred EEEEEeCC-ceeeeecC----CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2184 LSSFTLNG-VLVARAKL----PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2184 I~I~dlnG-~~L~s~~~----~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
+++++... ........ .-+.-+.++++.+.|+.+++|-
T Consensus 853 VKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L------------------------------------- 895 (1034)
T KOG4190|consen 853 VKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL------------------------------------- 895 (1034)
T ss_pred heeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh-------------------------------------
Confidence 66665431 11111110 1345678888888888877652
Q ss_pred CccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE-Ee
Q 000085 2259 RFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIV-FT 2314 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrV-WD 2314 (2342)
.+|+|.+.|.++|+.+..+. ........++ .|..+.|+....|.++.| |.
T Consensus 896 ----SnGci~~LDaR~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 896 ----SNGCIAILDARNGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred ----cCCcEEEEecCCCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeeh
Confidence 26789999999999887766 3333333333 244455666666666666 65
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.3e-06 Score=107.48 Aligned_cols=175 Identities=15% Similarity=0.186 Sum_probs=120.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCC--ceEEEeccCCccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i~t 2075 (2342)
.-+|++|+-+.+.|+.|+..|.|++|++.+|.......+|..+||-+.=+.||..+.+.+.-. -..+|+....
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~----- 1177 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST----- 1177 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc-----
Confidence 346799999999999999999999999999999999999999999999999998877655432 4667877541
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI 2155 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI 2155 (2342)
..+.+.+. .-.|+.|+.....-+.|+......+||+.|+..+
T Consensus 1178 ----------------------------------~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1178 ----------------------------------GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ----------------------------------cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 12333333 2357778765444445555567899999999887
Q ss_pred EEE-ecC-----CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2156 RRL-VGV-----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2156 rsL-~gh-----~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.++ .+. ...++.|+|+.++++|++ .+|++........+-..+.. -.=.|+|.|.-++..+
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIlndG-----vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLILNDG-----VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS 1285 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEeeCc-----eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec
Confidence 773 321 247889999999998864 36776432111000001111 1225778887777553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.5e-05 Score=97.82 Aligned_cols=157 Identities=14% Similarity=0.172 Sum_probs=108.8
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
....|++|+....+++.|+.||.++|-.+.+...-... . | ++..+. -..-+++.|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~-----~----------g--laa~sn--------LsmNQtLeG 69 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK-----S----------G--LAAASN--------LSMNQTLEG 69 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc-----c----------c--cccccc--------cchhhhhcc
Confidence 45789999999999999999999999998874211000 0 0 111000 122357899
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec----CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCcee
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG----VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV 2194 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g----h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L 2194 (2342)
|...|..+.|+.+.+.+-|...+|.|.||-+-.|.....+.. ..+.+++|..||.-+.....||.+.+=+++|..+
T Consensus 70 H~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI 149 (1189)
T KOG2041|consen 70 HNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI 149 (1189)
T ss_pred CcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence 999999999999999999999999999999987764433222 2257788999998777777888888877776544
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
--..+ .......+.|++|.+.++.+-
T Consensus 150 wgKeL-kg~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 150 WGKEL-KGQLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred cchhc-chheccceeecccHHHHHhhh
Confidence 22111 112234677888876655443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0021 Score=79.83 Aligned_cols=233 Identities=15% Similarity=0.055 Sum_probs=153.9
Q ss_pred EEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC-----------CCCccc-cccC-CCCCceeecCCCcccccc
Q 000085 2043 CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS-----------SGMGTP-GNSI-GSSTPANASADKSRRRRI 2109 (2342)
Q Consensus 2043 cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~-----------~~V~sv-s~Sp-DG~~Las~s~D~s~~~~i 2109 (2342)
|=..+.||+.++- +.-|.|.++|..+.... .+..+.+ .....+ .+++ +|..++..+....-..+.
T Consensus 271 ~R~~nsDGkrIvF-q~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred ccccCCCCcEEEE-ecCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence 4445678887765 45678999998875322 2211100 000111 1222 455665555554443333
Q ss_pred CCceEEecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2110 EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS-DLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2110 ~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG-tIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
..-...--+|.+.|.-..+..++.-++.|..|| .+-|+|.++++..+....- .+..+..++||+.++.+.....+.++
T Consensus 349 ~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 349 WDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred CCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence 333334457888899999988888899999999 8999999998866655543 47889999999988888777888888
Q ss_pred EeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2188 TLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2188 dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
++.............+-|+...|+|++++++-+--+|- -...|
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy-------------------------------------~tq~I 471 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY-------------------------------------YTQSI 471 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecCcce-------------------------------------eeeeE
Confidence 88755555555556788999999999999996631111 13569
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe-------CCCcEEEEeCC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST-------ADKQLIVFTDP 2316 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-------sDGsIrVWDi~ 2316 (2342)
+++|+.+++...... ..+.=.+-+|.||+++|.--+ .|..+.=+...
T Consensus 472 klydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~ 525 (668)
T COG4946 472 KLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQ 525 (668)
T ss_pred EEEecCCCeEEEecC--CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEe
Confidence 999999988655433 222335567889999887443 35555444433
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0029 Score=80.92 Aligned_cols=250 Identities=8% Similarity=0.074 Sum_probs=126.3
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCC----C
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS----G 2083 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~----~ 2083 (2342)
+..++.++.+|.++.+|..+|+.+-+............+ .+..++.++.++.+..+|..+++.........+. .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 455666778999999999999987665543221111122 2456777888999999999988765544221110 0
Q ss_pred Cccccc--------cCCCCCceeecCCCccccccCCceEEecCCC-CCeEEEEEec--CCCEEEEEeCCCcEEEEECCCC
Q 000085 2084 MGTPGN--------SIGSSTPANASADKSRRRRIEGPIHVLRGHH-REILCCCVSS--DLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2084 V~svs~--------SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs-~~Vt~VafSP--Dg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...... ..++...+....++...|....... ...+. .....+.-+| .+..++.++.+|.+..+|..+|
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP-TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccC-CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 000000 1112222222222333333210000 00000 0000011111 2556777888999999999999
Q ss_pred eEEEEEecCC--------cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2153 RLIRRLVGVD--------AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2153 klIrsL~gh~--------vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
+.+....... ...+..+.+|.+++.+..+|.+ +|..+. ..+ ....+..+. +.+++.++
T Consensus 277 ~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~-------~~~-~~~~sp~v~--~g~l~v~~--- 342 (394)
T PRK11138 277 QIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVE-LWSQSD-------LLH-RLLTAPVLY--NGYLVVGD--- 342 (394)
T ss_pred CEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcE-EEcccc-------cCC-CcccCCEEE--CCEEEEEe---
Confidence 8776543211 1222233344444444433332 232110 000 011111111 23344332
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE-EEEecCCCEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA-LALNKDNTNLLV 2303 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its-LafSPDG~~LaS 2303 (2342)
.||.|.+.|..+|+.+....... ..+.+ ..+ .+..|++
T Consensus 343 --------------------------------------~~G~l~~ld~~tG~~~~~~~~~~-~~~~s~P~~--~~~~l~v 381 (394)
T PRK11138 343 --------------------------------------SEGYLHWINREDGRFVAQQKVDS-SGFLSEPVV--ADDKLLI 381 (394)
T ss_pred --------------------------------------CCCEEEEEECCCCCEEEEEEcCC-CcceeCCEE--ECCEEEE
Confidence 26789999999999988876322 22222 222 2447999
Q ss_pred EeCCCcEEEEeC
Q 000085 2304 STADKQLIVFTD 2315 (2342)
Q Consensus 2304 GSsDGsIrVWDi 2315 (2342)
++.||.|+.++.
T Consensus 382 ~t~~G~l~~~~~ 393 (394)
T PRK11138 382 QARDGTVYAITR 393 (394)
T ss_pred EeCCceEEEEeC
Confidence 999999999874
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=86.74 Aligned_cols=191 Identities=15% Similarity=0.133 Sum_probs=124.5
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCC-eEEEEecCCCCEEEEEeCCCc-----eEEEeccCCccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAP-VTCLALSSDSNFLVTGSQDTT-----ILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~-VtcLAfSPDG~~LaSGS~DGT-----VrVWDl~tg~~i~t 2075 (2342)
-+|++.+..++.|+.+|.|.+.+- +-+.++.++.|... |+.+-...+..+|++.+.|++ ++||+++......
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~- 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN- 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC-
Confidence 457888999999999998877763 23444677777776 666655545578999887754 8999998742110
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC--C--
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR--R-- 2151 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr--T-- 2151 (2342)
...++... +.. .........++.+++++.+-..+|.|-.||.|..+.-. .
T Consensus 107 -------sP~c~~~~--------------ri~-----~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 107 -------SPQCLYEH--------------RIF-----TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred -------Ccceeeee--------------eee-----ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence 00000000 000 00011235678899999999999999999999987421 1
Q ss_pred CeE-EEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee-cCCCCCCeEEEEEccCCCEEEEE
Q 000085 2152 GRL-IRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA-KLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2152 Gkl-IrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~-~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
|.. .-...+ ..++.+++-.||..+++...+..|.+|.+.|+..... .-.|...++|..+++....++++
T Consensus 161 gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 161 GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 111 111112 3489999999999877777888999999988763222 22377788999998765534444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0023 Score=76.30 Aligned_cols=215 Identities=12% Similarity=0.064 Sum_probs=137.1
Q ss_pred EEEEcC-CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEec-CCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2001 VVSITH-DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS-SDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2001 ~VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfS-PDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
..+|.+ ++.++++....+.|+.|+..+++... +... . ...+++. +++.+ +.+..++. .++|..++........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l-~v~~~~~~-~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRL-YVADSGGI-AVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEE-EEEETTCE-EEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCCEE-EEEEcCce-EEEecCCCcEEEEeec
Confidence 367887 67777777788999999998875432 2211 1 5666777 66544 44455444 5558887643322211
Q ss_pred ---C-CCCCCccccccCCCCCceeecCCCc---------cccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcE
Q 000085 2079 ---E-PSSGMGTPGNSIGSSTPANASADKS---------RRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDL 2144 (2342)
Q Consensus 2079 ---~-~~~~V~svs~SpDG~~Las~s~D~s---------~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtI 2144 (2342)
. .......+++.++|...++...... .++.....+..+...-...+.++|+|+++.++ +-+..+.|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeeccccccee
Confidence 1 3345667888899986665543321 12222323333333445678999999998765 66778899
Q ss_pred EEEECCC-Ce-E-----EEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc-cCC
Q 000085 2145 LLHSIRR-GR-L-----IRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS-LDG 2214 (2342)
Q Consensus 2145 rIWDLrT-Gk-l-----IrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS-PDG 2214 (2342)
..+++.. +. . +..+.... ..-+++..+|++.+.....+.|.+|+.+|+.+.....+ ...+++++|. ++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p-~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP-VPRPTNCAFGGPDG 237 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S-SSSEEEEEEESTTS
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC-CCCEEEEEEECCCC
Confidence 9999863 22 1 12222222 46799999999999888899999999999888877776 3489999994 676
Q ss_pred CEEEEEe
Q 000085 2215 HSALIGV 2221 (2342)
Q Consensus 2215 k~LaSGS 2221 (2342)
+.|++.+
T Consensus 238 ~~L~vTt 244 (246)
T PF08450_consen 238 KTLYVTT 244 (246)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 6666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.7e-05 Score=66.08 Aligned_cols=39 Identities=41% Similarity=0.722 Sum_probs=36.7
Q ss_pred cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 2028 AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 2028 gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
++++.++.+|.+.|++++|+|++.+|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.012 Score=72.19 Aligned_cols=246 Identities=15% Similarity=0.116 Sum_probs=147.3
Q ss_pred EEEcC-CCCEEEEEEcCCc-EEEEecCCcccceecccCCCCe--EEEEecCCCCEEEEEe-----CCCceEEEeccCCcc
Q 000085 2002 VSITH-DKEIITGGHVDGS-IKLLTSDGAKTLETASGHCAPV--TCLALSSDSNFLVTGS-----QDTTILLWRIHRAFT 2072 (2342)
Q Consensus 2002 VafSp-DGklLASGS~DGs-IrVWDl~tgkll~tL~GHt~~V--tcLAfSPDG~~LaSGS-----~DGTVrVWDl~tg~~ 2072 (2342)
++.+| ++..++.+-.-|+ ..+||..+++..+.+....+.- =.-.||+||++|+|.= ..|.|-|||...+..
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 67788 5557777777665 6789999998776543222111 1247999999999863 458899999984321
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.......+.-+...+.+.|||..++++... +..|.+. ....+=-...+-.+..-|..+|
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGG-------------I~Thpd~--------GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGG-------------IETHPDS--------GRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCC-------------CccCccc--------CceecChhhcCCceEEEecCCC
Confidence 111122233334455566777666554432 0111110 0011112234456666777888
Q ss_pred eEEEEEec----C--CcEEEEEecCCcEEEEEeCCC-------eEEEEEeCCceeeeecC------CCCCCeEEEEEccC
Q 000085 2153 RLIRRLVG----V--DAHAVSLSSEGVIMTWNKLQH-------TLSSFTLNGVLVARAKL------PLSGSIGCMEISLD 2213 (2342)
Q Consensus 2153 klIrsL~g----h--~vssLSfSpDG~IlVwdssdG-------sI~I~dlnG~~L~s~~~------~Hs~~ItsLafSPD 2213 (2342)
+.+..... | +++.+++..+|.+.+-.-..| -+.++.. +..+..... ...+.|-+|+++++
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCC
Confidence 87776432 3 478899999998776543322 1223332 222222111 14578999999999
Q ss_pred CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEE
Q 000085 2214 GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2214 Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLa 2293 (2342)
|.++++.+- .-+.+.+||..+++.+.... -..+..++
T Consensus 228 g~~ia~tsP----------------------------------------rGg~~~~~d~~tg~~~~~~~---l~D~cGva 264 (305)
T PF07433_consen 228 GRLIAVTSP----------------------------------------RGGRVAVWDAATGRLLGSVP---LPDACGVA 264 (305)
T ss_pred CCEEEEECC----------------------------------------CCCEEEEEECCCCCEeeccc---cCceeeee
Confidence 999987751 14679999999999887765 33577788
Q ss_pred EecCCCEEEEEeCCCcEEEEe
Q 000085 2294 LNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2294 fSPDG~~LaSGSsDGsIrVWD 2314 (2342)
..+++ ++++. ..|.+....
T Consensus 265 ~~~~~-f~~ss-G~G~~~~~~ 283 (305)
T PF07433_consen 265 PTDDG-FLVSS-GQGQLIRLS 283 (305)
T ss_pred ecCCc-eEEeC-CCccEEEcc
Confidence 77777 45444 445544444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0049 Score=86.31 Aligned_cols=172 Identities=13% Similarity=0.057 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecC---------------C--------cccceeccc-------------------
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSD---------------G--------AKTLETASG------------------- 2036 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~---------------t--------gkll~tL~G------------------- 2036 (2342)
+.|++||||+.+|+..+.++++.+.+-+ . |+.-..|+|
T Consensus 123 I~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d 202 (928)
T PF04762_consen 123 ILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVD 202 (928)
T ss_pred EEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccc
Confidence 4569999999999998888888875421 0 111111111
Q ss_pred -----CCCCeEEEEecCCCCEEEEEeC---C---CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC--
Q 000085 2037 -----HCAPVTCLALSSDSNFLVTGSQ---D---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-- 2103 (2342)
Q Consensus 2037 -----Ht~~VtcLAfSPDG~~LaSGS~---D---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-- 2103 (2342)
+.+.-..++|-.||.++|..+. + +.++||+-+. ....+ .....+--..++|.|.|+.+++.....
T Consensus 203 ~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~L~st-SE~v~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 203 EGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-ELQST-SEPVDGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred cCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-eEEec-cccCCCccCCccCCCCCCEEEEEEEcCCC
Confidence 3345567899999999998764 2 5799999773 22221 223344456789999999998776411
Q ss_pred --ccccccCCce---EEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE--EEEEecC---CcEEEEEecC
Q 000085 2104 --SRRRRIEGPI---HVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL--IRRLVGV---DAHAVSLSSE 2171 (2342)
Q Consensus 2104 --s~~~~i~~~l---~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl--IrsL~gh---~vssLSfSpD 2171 (2342)
+..+...+.. ..+ ......|..+.|++|+..++..-.|. |.+|...+... .+.+... ....+.|++.
T Consensus 281 ~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 281 HDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred cEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 1112222221 112 23456899999999999999877665 99999877642 2333321 2334677775
Q ss_pred Cc
Q 000085 2172 GV 2173 (2342)
Q Consensus 2172 G~ 2173 (2342)
..
T Consensus 360 ~p 361 (928)
T PF04762_consen 360 KP 361 (928)
T ss_pred CC
Confidence 43
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00055 Score=81.12 Aligned_cols=267 Identities=14% Similarity=0.181 Sum_probs=157.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-----cceecccCC------------CCeEEEEecCCC--CEEEEEeC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-----TLETASGHC------------APVTCLALSSDS--NFLVTGSQ 2058 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-----ll~tL~GHt------------~~VtcLAfSPDG--~~LaSGS~ 2058 (2342)
-+++|-|...|.++++|...|.|.+|.-.... ....+++|. ..|..+.|..++ ..++-.+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 35668999999999999888999999755322 233466664 357788887654 34555678
Q ss_pred CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc--------cCCceEEe-cCCCCCeEEEEEe
Q 000085 2059 DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR--------IEGPIHVL-RGHHREILCCCVS 2129 (2342)
Q Consensus 2059 DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~--------i~~~l~~L-~GHs~~Vt~VafS 2129 (2342)
|.+|++|.+...............++ -+|-+..+.+.. .....+ ...+.... ..|...|+++.|.
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~~--~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTSTK--ELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred Cceeeeeeeecccchhhhcccccccc----ccccCCCcCCHH--HhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 99999999976321111000000000 011111010000 000000 01222223 6788899999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCe---EEEEEecCC-------cEEEEEecCC-cEEEEEeCCCeEEEEEeCCceee---
Q 000085 2130 SDLGVVVSCSDSSDLLLHSIRRGR---LIRRLVGVD-------AHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVA--- 2195 (2342)
Q Consensus 2130 PDg~lLaSGS~DGtIrIWDLrTGk---lIrsL~gh~-------vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~--- 2195 (2342)
.|...++++ .|=.|.+|++.--. .+-.++.|. ++...|+|.. .++.+....|.|++-++....+.
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 998887765 46789999986432 233334432 4556666653 45566777777777766421110
Q ss_pred ----eecC---------CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2196 ----RAKL---------PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2196 ----s~~~---------~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
.... .-...|..+.|+++|+++++-.
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd----------------------------------------- 299 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD----------------------------------------- 299 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----------------------------------------
Confidence 0000 1235788899999999999553
Q ss_pred CCCeEEEEECCC-CeEEEEEecCC------------CCCe---EEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2263 PSPSICFLDLHT-LKVFHVLKLGE------------GQDI---TALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2263 ~DGsIrIWDL~T-gk~L~tL~lgH------------s~~I---tsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
=-+|+|||++. ..++.+++ -| ...| ..+.||-|...+++|+..+..-++-
T Consensus 300 -yltvkiwDvnm~k~pikTi~-~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 300 -YLTVKIWDVNMAKNPIKTIP-MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred -cceEEEEecccccCCceeec-hHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 13588888865 34566664 22 1222 3467888888888888777666665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0016 Score=82.82 Aligned_cols=167 Identities=11% Similarity=0.148 Sum_probs=119.9
Q ss_pred EEEEcCCCC---EEEEEEcCC---------cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEE--EeCCCceEEEe
Q 000085 2001 VVSITHDKE---IITGGHVDG---------SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT--GSQDTTILLWR 2066 (2342)
Q Consensus 2001 ~VafSpDGk---lLASGS~DG---------sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaS--GS~DGTVrVWD 2066 (2342)
.+.|++-|. +|++..-|. ++++.++++..+.-.+. -.++|.++.|+++|+.++. |-.-..+.|+|
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 367887777 333333333 57777776333333332 4789999999999976654 44556777777
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC---Cc
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS---SD 2143 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D---Gt 2143 (2342)
++.. ++.. --.++-+++-|+|.|++++.+|-+ |.
T Consensus 301 lr~~-----------------------------------------~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 301 LRGK-----------------------------------------PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred CCCC-----------------------------------------EeEe--CCCCCccceEECCCCCEEEEeecCCCCCc
Confidence 7641 1222 234566788999999999887754 89
Q ss_pred EEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeC------CCeEEEEEeCCceeeeecCCCCCCeEEEEEccC
Q 000085 2144 LLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKL------QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2144 IrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdss------dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPD 2213 (2342)
+-|||+.+.+++..+.....+.+.|+|||.+++.... |+.+++|+..|..+....+.. ....+.|-|.
T Consensus 338 mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s--EL~qv~W~P~ 411 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS--ELLQVEWRPF 411 (566)
T ss_pred eEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhH--hHhheeeeec
Confidence 9999999999999999888899999999999988754 467899999998876554322 5777788753
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0001 Score=91.29 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=105.3
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCC-------cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDG-------AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~t-------gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
++--.+.+-+++++.|.+|++|.+.. ..+..+++.|+.+|..+.|-.+-+++++ .||-|.+||.--+....
T Consensus 741 i~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~La 818 (1034)
T KOG4190|consen 741 IAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLA 818 (1034)
T ss_pred HHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhH
Confidence 44334455677889999999999763 2366788999999999999988888876 48999999988766544
Q ss_pred cccc-CCCCCCccccccC--CCCCceee-cCCCc-ccccc-------CCceEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2075 TGTI-EPSSGMGTPGNSI--GSSTPANA-SADKS-RRRRI-------EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS 2142 (2342)
Q Consensus 2075 t~~~-~~~~~V~svs~Sp--DG~~Las~-s~D~s-~~~~i-------~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG 2142 (2342)
.... ...+.+..+..-+ +...+..+ ....+ ...+. +-.+..-.+...-+.|+++.+.|++++.+-..|
T Consensus 819 q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 819 QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC
Confidence 3311 1111111111111 23333322 22222 11111 111222245567789999999999999999999
Q ss_pred cEEEEECCCCeEEEEEecCC
Q 000085 2143 DLLLHSIRRGRLIRRLVGVD 2162 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~gh~ 2162 (2342)
+|.+.|.++|+.+.+++.-+
T Consensus 899 ci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 899 CIAILDARNGKVINSWRPME 918 (1034)
T ss_pred cEEEEecCCCceeccCCccc
Confidence 99999999999988776544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00033 Score=89.94 Aligned_cols=246 Identities=12% Similarity=0.069 Sum_probs=141.5
Q ss_pred EEEEcCCCC--EEEEEEcCCcEEEEecCC---cccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcccc
Q 000085 2001 VVSITHDKE--IITGGHVDGSIKLLTSDG---AKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2001 ~VafSpDGk--lLASGS~DGsIrVWDl~t---gkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
-+.|++... +-++......-.+|++.. ...-..+.||+..|+.+.|.|.. ..+++++.|..|..||++...
T Consensus 72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--- 148 (1081)
T KOG0309|consen 72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--- 148 (1081)
T ss_pred ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---
Confidence 355665543 333334455566788753 23345678999999999999864 578999999999999998731
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR- 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk- 2153 (2342)
.++.....-....+.|.|+.....+...+....|++||++.|.
T Consensus 149 ------------------------------------~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~ 192 (1081)
T KOG0309|consen 149 ------------------------------------RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST 192 (1081)
T ss_pred ------------------------------------cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence 1222233333455678888655556666777889999999764
Q ss_pred EEEEEecCC--cEEEEEecCCcEEEE-EeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2154 LIRRLVGVD--AHAVSLSSEGVIMTW-NKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2154 lIrsL~gh~--vssLSfSpDG~IlVw-dssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
.+.++++|- +..+.|..--.-.+| ...++++..|+..... ......+.+.+|+.-.+.|-|+-.++--..|..
T Consensus 193 pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n--- 269 (1081)
T KOG0309|consen 193 PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN--- 269 (1081)
T ss_pred ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe---
Confidence 566676643 222222211111111 1223444444432110 011111244566666666655433321111110
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeEEEEEecCCCCCeEEEEEecCC----------
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHVLKLGEGQDITALALNKDN---------- 2298 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~tL~lgHs~~ItsLafSPDG---------- 2298 (2342)
+. .... .+.....|+..+ .++++++. ||...|....|-..+
T Consensus 270 ----~v-------------------~~~~----c~n~d~e~n~~~~~~pVh~F~-GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 270 ----MV-------------------PQLR----CENSDLEWNVFDLNTPVHTFV-GHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred ----ee-------------------eecc----ccchhhhhccccCCcceeeec-CcchHHHHHhhhhcccccCCCCccc
Confidence 00 0000 123344455544 46788998 999888777775433
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000085 2299 TNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2299 ~~LaSGSsDGsIrVWDi~ 2316 (2342)
-+|+|-+.|..+++|-+.
T Consensus 322 fQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeEEEeecCCceEeeecc
Confidence 269999999999999854
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0045 Score=78.39 Aligned_cols=254 Identities=13% Similarity=0.078 Sum_probs=132.8
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
+..+++++.+|.+..+|..+|+.+-...-.......... ++..++.++.|+.+..+|..+++.....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~----------- 131 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRA----------- 131 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeee-----------
Confidence 557778888999999999999887654433322222333 4678888999999999999886533221
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcE--
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC-CCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAH-- 2164 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~-VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vs-- 2164 (2342)
.. .+.+.+ ..+ .+..++.++.||.++.||.++|+.+..+......
T Consensus 132 ----------------------~~--------~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 132 ----------------------KL--------SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred ----------------------cc--------CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 00 001111 111 2456777788999999999999987766432210
Q ss_pred -----EEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCC------CC---e-EEEEEccCCCEEEEEeCCCCCCC
Q 000085 2165 -----AVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLS------GS---I-GCMEISLDGHSALIGVNSSSTNN 2228 (2342)
Q Consensus 2165 -----sLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs------~~---I-tsLafSPDGk~LaSGS~DGs~d~ 2228 (2342)
...+ .++ .++.+..++.+..++.. |..+-....... .. + .+..+ .+..+++++.++....
T Consensus 180 ~~~~~sp~~-~~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 180 LRGSASPVI-ADG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAA 255 (377)
T ss_pred ecCCCCCEE-ECC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEE
Confidence 0011 122 33444444555555542 322211110000 00 0 01111 2334554443332111
Q ss_pred ---CCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2229 ---GSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2229 ---~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS 2305 (2342)
.....+|........ ..........+...||.|..+|..+++.+............+... .+..|++++
T Consensus 256 ~d~~tG~~~W~~~~~~~~------~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 256 LDLRSGRVLWKRDASSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred EECCCCcEEEeeccCCcc------CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe
Confidence 011233433211100 011111111222358999999999998876653111112222222 466899999
Q ss_pred CCCcEEEEeCCCC
Q 000085 2306 ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2306 sDGsIrVWDi~sL 2318 (2342)
.||.|+++|..+.
T Consensus 328 ~~G~l~~~d~~tG 340 (377)
T TIGR03300 328 FEGYLHWLSREDG 340 (377)
T ss_pred CCCEEEEEECCCC
Confidence 9999999996554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00059 Score=83.94 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=103.8
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCe----EEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCc--eee
Q 000085 2123 ILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR----LIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV--LVA 2195 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk----lIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~--~L~ 2195 (2342)
+..+..++++++++.+..+....+++.+... ++...... ....+.+..+....+.....|.++.+++... .-.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3445567778888888877777777765432 22222222 1344444444443333333444444443210 122
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
....+|-..++.|+|+||+++++++.. |..|+|-.....
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDR-----------------------------------------DEkIRvs~ypa~ 183 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADR-----------------------------------------DEKIRVSRYPAT 183 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecC-----------------------------------------CceEEEEecCcc
Confidence 334569999999999999999998852 667888777777
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
-.+..+..||..-|..++.-++.. |++||.|++|++||..+.+
T Consensus 184 f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred cchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecccCC
Confidence 777788889999999999987654 9999999999999976653
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0022 Score=77.42 Aligned_cols=232 Identities=13% Similarity=0.076 Sum_probs=138.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccC---------cceeEEEEEcCCCC--EEEEEEcCCcEEEEe
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSG---------IRSSAVVSITHDKE--IITGGHVDGSIKLLT 2024 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~g---------I~Svt~VafSpDGk--lLASGS~DGsIrVWD 2024 (2342)
.|.+|++|..|+.+-+|....... .++.+......|... -..++.+.|.++++ .+...+.|.+|++|.
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWK 114 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWK 114 (433)
T ss_pred ccceEeecCCCCeEEEeecccccc-cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeee
Confidence 466777777777777765332111 122222222112111 01244577888776 455556799999998
Q ss_pred cCCccc-----------------------------------ceec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 2025 SDGAKT-----------------------------------LETA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 2025 l~tgkl-----------------------------------l~tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+..... .+.+ .+|+--|.++.++.|+..++|+ .|=.|.+|++.
T Consensus 115 i~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnle 193 (433)
T KOG1354|consen 115 IRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLE 193 (433)
T ss_pred eeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeecccc
Confidence 642110 0111 4588889999999999988876 47889999987
Q ss_pred CCccccccc-------cCCCCCCccccccCCCCCceeec--CCCccccccCC------------------ceEEecCCCC
Q 000085 2069 RAFTSRTGT-------IEPSSGMGTPGNSIGSSTPANAS--ADKSRRRRIEG------------------PIHVLRGHHR 2121 (2342)
Q Consensus 2069 tg~~i~t~~-------~~~~~~V~svs~SpDG~~Las~s--~D~s~~~~i~~------------------~l~~L~GHs~ 2121 (2342)
-......+. .....-+++..|+|....+.+.+ .+.++..+... ...-+.+--.
T Consensus 194 i~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIs 273 (433)
T KOG1354|consen 194 IIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIIS 273 (433)
T ss_pred ccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhh
Confidence 532211110 01122355566777554443322 22223322210 0111122235
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEC-CCCeEEEEEecCC-----------------cEEEEEecCCcEEEEEeCCCe
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSI-RRGRLIRRLVGVD-----------------AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDL-rTGklIrsL~gh~-----------------vssLSfSpDG~IlVwdssdGs 2183 (2342)
.|..+.|+++|+++++-+. -+|++||+ ...+.+.++.-|. -.-++|+.++..+..++-...
T Consensus 274 SISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~ 352 (433)
T KOG1354|consen 274 SISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNV 352 (433)
T ss_pred hhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccce
Confidence 7889999999999987654 59999999 5666777766553 135788888888888888888
Q ss_pred EEEEEeC
Q 000085 2184 LSSFTLN 2190 (2342)
Q Consensus 2184 I~I~dln 2190 (2342)
+++|+..
T Consensus 353 frvf~~~ 359 (433)
T KOG1354|consen 353 FRVFNLA 359 (433)
T ss_pred EEEecCC
Confidence 8888853
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00019 Score=60.89 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=36.4
Q ss_pred CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2275 LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2275 gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
++++.++. +|...|++++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36778888 9999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0015 Score=84.82 Aligned_cols=96 Identities=20% Similarity=0.309 Sum_probs=74.7
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeE
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT 2042 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt 2042 (2342)
...++.+.||-. +|. |++....+.+. +++||+|..-+|+.|-.-|.+.+|...+.+.......|+.+|+
T Consensus 37 ~er~GSVtIfad-tGE-------Pqr~Vt~P~ha---tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~ 105 (1416)
T KOG3617|consen 37 PERGGSVTIFAD-TGE-------PQRDVTYPVHA---TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQ 105 (1416)
T ss_pred CCCCceEEEEec-CCC-------CCcccccceeh---hhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCce
Confidence 445667888853 222 22221122233 3499999999999999999999999888776666778999999
Q ss_pred EEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2043 CLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2043 cLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
.+.||++|..++|+..-|.|.+|....
T Consensus 106 ~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 106 GLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eEEecCCCCeEEEcCCCceeEEEEeee
Confidence 999999999999999999999999874
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.024 Score=67.71 Aligned_cols=214 Identities=14% Similarity=0.099 Sum_probs=132.2
Q ss_pred EEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCcccccc-CCCCCceeecCCCccccccC-Cc---eEEe
Q 000085 2043 CLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNS-IGSSTPANASADKSRRRRIE-GP---IHVL 2116 (2342)
Q Consensus 2043 cLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~S-pDG~~Las~s~D~s~~~~i~-~~---l~~L 2116 (2342)
+++|.+ ++.++++--..+.|..|+..++....... .. ...+.+. +++..+++. ..+....+.. .. +...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~-~~G~~~~~~~g~l~v~~-~~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PG-PNGMAFDRPDGRLYVAD-SGGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SS-EEEEEEECTTSEEEEEE-TTCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CC-CceEEEEccCCEEEEEE-cCceEEEecCCCcEEEEeec
Confidence 567887 66677777678889999988764322111 11 3444455 554444443 3443333322 11 2222
Q ss_pred c--C-CCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEE-EEEeCCCe
Q 000085 2117 R--G-HHREILCCCVSSDLGVVVSCSDS--------SDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIM-TWNKLQHT 2183 (2342)
Q Consensus 2117 ~--G-Hs~~Vt~VafSPDg~lLaSGS~D--------GtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~Il-VwdssdGs 2183 (2342)
. . .....+.+++.++|++.++.... |.|..++.. ++....... ....-+++++||+.+ +.+...+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 1 1 34567899999999977776644 568888877 554444433 346789999999865 46677889
Q ss_pred EEEEEeC--Cceee--eec--CCC-CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2184 LSSFTLN--GVLVA--RAK--LPL-SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2184 I~I~dln--G~~L~--s~~--~~H-s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
|..|+++ +..+. ... ... .+..-.+++..+|++.++.-
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----------------------------------- 202 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----------------------------------- 202 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----------------------------------
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----------------------------------
Confidence 9999985 32121 111 111 23478899999998777542
Q ss_pred CCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-cCCCEEEEEe
Q 000085 2257 NNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN-KDNTNLLVST 2305 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-PDG~~LaSGS 2305 (2342)
..+.|.++|.. |+.+..+... ...+++++|. ++...|++.+
T Consensus 203 ------~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 203 ------GGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ------TTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred ------CCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 14679999987 8888888855 4589999994 6767666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0028 Score=77.95 Aligned_cols=249 Identities=14% Similarity=0.150 Sum_probs=141.4
Q ss_pred EEEEecCCcccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCcee
Q 000085 2020 IKLLTSDGAKTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPAN 2098 (2342)
Q Consensus 2020 IrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las 2098 (2342)
+++.+..+.+..+.+.+|...|..++|||..+ ++..++.+.+|+|.|+.+...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-------------------------- 228 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-------------------------- 228 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee--------------------------
Confidence 67777777777778889999999999999876 788899999999999988422
Q ss_pred ecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeE-EEEEe----cCCcEEE------
Q 000085 2099 ASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRL-IRRLV----GVDAHAV------ 2166 (2342)
Q Consensus 2099 ~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGkl-IrsL~----gh~vssL------ 2166 (2342)
+..+..| ..+++++|.-| ..+|+.|-..|.|.|||++..+- +..+. .+.+..+
T Consensus 229 --------------vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n 293 (463)
T KOG1645|consen 229 --------------VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPN 293 (463)
T ss_pred --------------eeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcc
Confidence 2223445 78999999876 56778888999999999986432 12221 1222211
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeCC---ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC-----------Ccc
Q 000085 2167 SLSSEGVIMTWNKLQHTLSSFTLNG---VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG-----------SYD 2232 (2342)
Q Consensus 2167 SfSpDG~IlVwdssdGsI~I~dlnG---~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~-----------i~d 2232 (2342)
...+.|.+++.....- ..|.+.+ ...........+...++.+.+-.++++..-...-.... ...
T Consensus 294 ~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~ 371 (463)
T KOG1645|consen 294 KIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF 371 (463)
T ss_pred ccccccceEEeeehhh--hhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc
Confidence 2333445555443322 2333321 11111111124455666666655555544322110000 000
Q ss_pred cccccCCCC----C-----CccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec-CCCEEE
Q 000085 2233 NIQGLNSKQ----S-----GTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK-DNTNLL 2302 (2342)
Q Consensus 2233 ~Lw~l~~~~----~-----~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP-DG~~La 2302 (2342)
.+|...... . ....+.+... .....+.-..+.+.+||..+++.++++. -+.+|..++... ++.-++
T Consensus 372 pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n--n~iv~~gd~tn~lil~D~~s~evvQ~l~--~~epv~Dicp~~~n~~syL 447 (463)
T KOG1645|consen 372 PVCGKRRTYFGSKQTKLSTTQAIRAVEDN--NYIVVVGDSTNELILQDPHSFEVVQTLA--LSEPVLDICPNDTNGSSYL 447 (463)
T ss_pred eeeeecccccCCcccccccccceeccccc--cEEEEecCCcceeEEeccchhheeeecc--cCcceeecceeecCCcchh
Confidence 111110000 0 0000000000 0000111146789999999999999988 447888887654 444455
Q ss_pred EEeCCCcEEEEeC
Q 000085 2303 VSTADKQLIVFTD 2315 (2342)
Q Consensus 2303 SGSsDGsIrVWDi 2315 (2342)
..-.|..++||..
T Consensus 448 a~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 448 ALLTDDRVHIYKN 460 (463)
T ss_pred hheecceEEEEec
Confidence 5566778888874
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.005 Score=73.44 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=108.7
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccC---CC---CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGH---CA---PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GH---t~---~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
.++-...+|.|.++..+.......+.+- .- .-.++.|++.+..++++-.+|.+.+-+.....
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~------------ 154 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV------------ 154 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee------------
Confidence 4555667888888876543322222221 11 13467778878888887777777633322210
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECC-CCeEEEE-Eec
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIR-RGRLIRR-LVG 2160 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLr-TGklIrs-L~g 2160 (2342)
-+.++.++.|+-+++...|+. +.+++.+||.||.+..||+| .++.+.+ .+-
T Consensus 155 --------------------------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv 208 (339)
T KOG0280|consen 155 --------------------------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV 208 (339)
T ss_pred --------------------------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence 023456788999999999985 45789999999999999999 4444443 222
Q ss_pred CC--cEEEEEe-cCCcEEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCC
Q 000085 2161 VD--AHAVSLS-SEGVIMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2161 h~--vssLSfS-pDG~IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk 2215 (2342)
|. +.++.-+ |.+.+++.+..+..|++|+.. ++++.... -.+.|+.+..+|.-.
T Consensus 209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIF 266 (339)
T ss_pred eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhh
Confidence 33 3333333 467789999999999999986 55554433 458899998888544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.018 Score=75.28 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=79.4
Q ss_pred EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccccc
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQ 2253 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~ 2253 (2342)
+++.+...|+|.++++....+......|.+.|.++.|-....++-.+. +...
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsy-s~~n--------------------------- 490 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSY-SHVN--------------------------- 490 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeee-cccc---------------------------
Confidence 456677888999999876666655555999999999986665554332 1110
Q ss_pred ccCCCCccCCCCeEEEEECCCCeEE--EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2254 SVDNNRFDFPSPSICFLDLHTLKVF--HVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2254 s~ss~~ias~DGsIrIWDL~Tgk~L--~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
..... --+.+.|-|+++|-.. ..++.....+|+.+..|.-|++|+..-.|.-+-+||..+++
T Consensus 491 ~~sg~----vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 491 SASGG----VRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred ccccc----eeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccch
Confidence 00000 1346788899887532 22333456789999999999999999999999999976654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0084 Score=78.24 Aligned_cols=257 Identities=13% Similarity=0.103 Sum_probs=149.9
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC------------CEEEEEeCCCceEEEecc
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS------------NFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG------------~~LaSGS~DGTVrVWDl~ 2068 (2342)
++.|+|.| +||.|+ ...|.|.|..+.+.++++.-|...|+.+.|.|-. -.|+++...|.|.+||+.
T Consensus 20 A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV 97 (1062)
T ss_pred ccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence 47788877 556554 5678999999999999999999999999998721 256778888999999998
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC---C-CEEEEEeCCCcE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD---L-GVVVSCSDSSDL 2144 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD---g-~lLaSGS~DGtI 2144 (2342)
.+.. +..+..|.+++..++|-+. . ..++.-....++
T Consensus 98 ~~s~----------------------------------------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 98 LASV----------------------------------------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTL 137 (1062)
T ss_pred hhhh----------------------------------------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEE
Confidence 7421 2234567778888888753 3 466666777899
Q ss_pred EEEECCCCeEEEEEecCC-c-EEEEEec-CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC-------
Q 000085 2145 LLHSIRRGRLIRRLVGVD-A-HAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG------- 2214 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~gh~-v-ssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG------- 2214 (2342)
.+|+..+|+.+....... + .++.+.| |.+-+..-...|.+.+-+.-|.. ....+..-+.++.+.
T Consensus 138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s------ep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS------EPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC------CCCCCceeEEEecCccchhhhh
Confidence 999999999877665432 2 2344444 22222222333443333322200 011222222222221
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf 2294 (2342)
.-.++|. ..+....... +-.+ ...++|+|.-.... +......+.|+|++-..++.++.. ..+.+.-+.|
T Consensus 212 re~at~n-s~ts~~~sa~-fity----~a~faf~p~~rn~l----fi~~prellv~dle~~~~l~vvpi-er~~akfv~v 280 (1062)
T KOG1912|consen 212 RETATGN-STTSTPASAY-FITY----CAQFAFSPHWRNIL----FITFPRELLVFDLEYECCLAVVPI-ERGGAKFVDV 280 (1062)
T ss_pred hhhhccc-cccCCCcchh-HHHH----HHhhhcChhhhceE----EEEeccceEEEcchhhceeEEEEe-ccCCcceeEe
Confidence 1111110 0000000000 0000 00112333221111 111256799999999888888873 3445566677
Q ss_pred ecCC--CEEEEEeCCCcEEEEeCC
Q 000085 2295 NKDN--TNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2295 SPDG--~~LaSGSsDGsIrVWDi~ 2316 (2342)
-|++ ..|+++-.||.+.+|-..
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEee
Confidence 6665 568899999999999744
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.014 Score=69.03 Aligned_cols=216 Identities=16% Similarity=0.119 Sum_probs=140.9
Q ss_pred CEEEEEEcCCcEEEEecCCccc-ceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCcc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKT-LETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGT 2086 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkl-l~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~s 2086 (2342)
.+||.|+.-|.+.+|...+.+. .+....|...|+-+.-..| .-.+..++.|.++++.++..+...
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~------------- 151 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK------------- 151 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-------------
Confidence 3789999999999999986543 3444445554443322222 234667889999999988764211
Q ss_pred ccccCCCCCceeecCCCccccccCCceEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEEEe-c--
Q 000085 2087 PGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHR--EILCCCVSSDLGVVVSCSDSSDLLLHSIRR-GRLIRRLV-G-- 2160 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~--~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-GklIrsL~-g-- 2160 (2342)
...|.. .+.++++++|++++++.+....|..|.+.. ++.+..+. .
T Consensus 152 -----------------------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 152 -----------------------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred -----------------------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 011222 277899999999999999999999998864 44433322 1
Q ss_pred -CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC--ceee---eecCCCCCCeEEEEEccCCCE--EEEEeCCCCCCCCCcc
Q 000085 2161 -VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG--VLVA---RAKLPLSGSIGCMEISLDGHS--ALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2161 -h~vssLSfSpDG~IlVwdssdGsI~I~dlnG--~~L~---s~~~~Hs~~ItsLafSPDGk~--LaSGS~DGs~d~~i~d 2232 (2342)
......+|+.....++...++|.+.+|++.. .+.. .....|.+.+..+.|++-|.. |+..
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s------------ 270 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS------------ 270 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe------------
Confidence 2357788999999999999999999999863 2222 122238999999999985532 2211
Q ss_pred cccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec------CCC-CCeEEEEEecCCCEEEEEe
Q 000085 2233 NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL------GEG-QDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l------gHs-~~ItsLafSPDG~~LaSGS 2305 (2342)
. +-+.+.+.|+++++-.+.+.. .|. ..|..-.|+.++..+.+.+
T Consensus 271 ------E-----------------------hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 271 ------E-----------------------HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ------c-----------------------CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 0 124577888887765554432 122 3477777887777666655
Q ss_pred CC
Q 000085 2306 AD 2307 (2342)
Q Consensus 2306 sD 2307 (2342)
++
T Consensus 322 e~ 323 (344)
T KOG4532|consen 322 EL 323 (344)
T ss_pred ch
Confidence 44
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=77.44 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=96.1
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEE-----cCCcEEEEecCCcc
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGH-----VDGSIKLLTSDGAK 2029 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS-----~DGsIrVWDl~tgk 2029 (2342)
-.+..++.++.|+.+-++++.. .......+.....+. ...++...+++|.++. .-+..+.|+++-.+
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~-----~~~~~~~i~~~~~~~---as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~ 170 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDK-----DLALMSRIPSIHSGS---ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK 170 (319)
T ss_pred ccCCceEecCCCceEEEEechH-----HHhhhhhcccccccc---cccceeecccEEecCCcceEeeccceeeecccccc
Confidence 3466777888888888887543 121111111111111 1133444556555543 22345666665433
Q ss_pred cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2030 TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
.+..-..-.+.|++++-+|. .+.+++|+.||.+.+||.++..
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~------------------------------------- 213 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA------------------------------------- 213 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-------------------------------------
Confidence 22211222345999999996 4567788999999999998741
Q ss_pred cCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCC
Q 000085 2109 IEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.+...+..|..+|+.+-|+| ++..+++++.||.+.-||..+
T Consensus 214 --~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 214 --MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 23445688999999999998 478899999999999999764
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00036 Score=84.01 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=96.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCc-----ccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGA-----KTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tg-----kll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.++.|...++++..|+..|.|.++|+..+ .+.+.+. |...|+|+..-. ++++|++.+.+|+|++||.+-.++.
T Consensus 256 fAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~ 334 (425)
T KOG2695|consen 256 FALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK 334 (425)
T ss_pred HHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence 34667778889999999999999999764 3344444 899999998776 7899999999999999999864321
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEE--EEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILC--CCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~--VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.-+..+.||.+.-.- +.+.++...|++++.|...+||.++.
T Consensus 335 -------------------------------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 335 -------------------------------------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred -------------------------------------cceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 124566777554333 33456778899999999999999999
Q ss_pred CeEEEEEec
Q 000085 2152 GRLIRRLVG 2160 (2342)
Q Consensus 2152 GklIrsL~g 2160 (2342)
|.++.++..
T Consensus 378 ghLl~tipf 386 (425)
T KOG2695|consen 378 GHLLCTIPF 386 (425)
T ss_pred CceeeccCC
Confidence 999988864
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=77.32 Aligned_cols=215 Identities=12% Similarity=0.100 Sum_probs=125.4
Q ss_pred eecccCCC-CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2032 ETASGHCA-PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2032 ~tL~GHt~-~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
..+.+|.+ .|+.+.++- .-.|+++..++.+......++.+.... .+ -.--
T Consensus 29 D~i~~~~d~~~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~----------------~r------------t~~i 79 (319)
T KOG4714|consen 29 DEIMQHADVKLSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLW----------------ER------------DDGI 79 (319)
T ss_pred hhcccccceEEEEeechh-hheeecccchhheeeeccceEEEechh----------------hc------------ccCc
Confidence 33444544 255666653 346777777777776665554322111 00 0001
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE-EEEEecC--CcEEEEEec------CCcEEEEEeCC
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL-IRRLVGV--DAHAVSLSS------EGVIMTWNKLQ 2181 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl-IrsL~gh--~vssLSfSp------DG~IlVwdssd 2181 (2342)
.+.+.+..|+.+-.+-+.+-.+..++++..||.+.+++.+.-.. .+.+... .....+... .|.+..|...+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 23445555655544444555577899999999999999865211 1111110 011111112 23344454433
Q ss_pred CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2182 HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2182 GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
..+.|++.-.............|++++-+|..+.++..+.
T Consensus 160 -~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt--------------------------------------- 199 (319)
T KOG4714|consen 160 -NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGT--------------------------------------- 199 (319)
T ss_pred -ceeeecccccccccccccccccchhhhCCcccccEEEEec---------------------------------------
Confidence 3445554321111101112345899999997777665531
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK-DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP-DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.||.+-+||++.......+...|..+|+.+-|+| ++..|+++++||.+.-||-.
T Consensus 200 -~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 200 -DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred -CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 2788999999987655555558999999999999 56889999999999999954
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.035 Score=76.26 Aligned_cols=212 Identities=12% Similarity=0.058 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+..+.|.-++.-++.+..+|.|.+-|..+.... ....-.+.|.+++||||++.++-.+.++++.+-+-.- ..+.....
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~~i~E~~L 148 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF-EPIAEKPL 148 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc-cchhcccc
Confidence 344778888888888888999999988775322 2222456799999999999999999888887644311 11100000
Q ss_pred CCCCCCccccccCCCCCceeecCCCc-cccc-------cCCceEEec--C---CCCCeEEEEEecCCCEEEEE-----eC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKS-RRRR-------IEGPIHVLR--G---HHREILCCCVSSDLGVVVSC-----SD 2140 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s-~~~~-------i~~~l~~L~--G---Hs~~Vt~VafSPDg~lLaSG-----S~ 2140 (2342)
.....+.+..+ ..+|... -..+ ........+ + -.+.=+.|+|--||.++++. ..
T Consensus 149 -------~~d~~~~sk~v-~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 149 -------DADDERKSKFV-NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred -------ccccccccccc-eecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 00000111111 1112110 0000 000000000 0 12223578999999998873 22
Q ss_pred CCcEEEEECCCCeEEEEEec--CCcEEEEEecCCcEEEEE---eCCCeEEEEEeCCceeeeecCC---CCCCeEEEEEcc
Q 000085 2141 SSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEGVIMTWN---KLQHTLSSFTLNGVLVARAKLP---LSGSIGCMEISL 2212 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG~IlVwd---ssdGsI~I~dlnG~~L~s~~~~---Hs~~ItsLafSP 2212 (2342)
-..|+|||-. |.+-.+-.. ....+++|-|.|..+..- ..++.|..|.-||-.-.....+ ....|..++|+.
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 3799999976 433222111 125788999999877653 3446788999888543333332 233499999999
Q ss_pred CCCEEEEEe
Q 000085 2213 DGHSALIGV 2221 (2342)
Q Consensus 2213 DGk~LaSGS 2221 (2342)
++..|++-.
T Consensus 300 ~sdiLAv~~ 308 (1265)
T KOG1920|consen 300 NSDILAVVT 308 (1265)
T ss_pred CCCceeeee
Confidence 999998754
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.039 Score=64.77 Aligned_cols=212 Identities=16% Similarity=0.117 Sum_probs=117.9
Q ss_pred CCcEEEEecCCcccceecccC--CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGH--CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GH--t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
+|+|..||..+|+.+....-- .....+.. .+++.++++++.++.+..||..+++......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~----------------- 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATA-VPDGGRVYVASGDGNLYALDAKTGKVLWRFD----------------- 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EEETTEEEEEETTSEEEEEETTTSEEEEEEE-----------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceE-EEeCCEEEEEcCCCEEEEEECCCCCEEEEee-----------------
Confidence 688999999998887665421 12222222 2356788888999999999998875433220
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE-ecC----C-cEEEEE
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL-VGV----D-AHAVSL 2168 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL-~gh----~-vssLSf 2168 (2342)
+.+..... . ..++..++.++.|+.++.+|..+|+.+... ... . ......
T Consensus 64 ---------------------~~~~~~~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 118 (238)
T PF13360_consen 64 ---------------------LPGPISGA--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP 118 (238)
T ss_dssp ---------------------CSSCGGSG--E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE
T ss_pred ---------------------ccccccce--e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCc
Confidence 00000000 1 223556677778889999999999998884 322 1 111222
Q ss_pred ecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCC---C------CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccC
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLS---G------SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLN 2238 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs---~------~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~ 2238 (2342)
..+|..++....++.+..++.. |+.+-....... . .+.+-.+..++ .++.++
T Consensus 119 ~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~----------------- 180 (238)
T PF13360_consen 119 AVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS----------------- 180 (238)
T ss_dssp EEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC-----------------
T ss_pred eEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc-----------------
Confidence 2225445555556666666653 443333222110 1 11122222233 333332
Q ss_pred CCCCCccccccccccccCCCCccCCCCe-EEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2239 SKQSGTEDFDLASDQSVDNNRFDFPSPS-ICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2239 ~~~~~~iaFspd~~~s~ss~~ias~DGs-IrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.++. +.+ |+.+++.+.... .+ .+.. ....++..|++++.|+.|..||..+
T Consensus 181 ------------------------~~g~~~~~-d~~tg~~~w~~~-~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 181 ------------------------GDGRVVAV-DLATGEKLWSKP-IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp ------------------------CTSSEEEE-ETTTTEEEEEEC-SS---ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred ------------------------CCCeEEEE-ECCCCCEEEEec-CC--CccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 1333 555 999998665333 12 2222 1456778888888999999999665
Q ss_pred C
Q 000085 2318 L 2318 (2342)
Q Consensus 2318 L 2318 (2342)
.
T Consensus 232 G 232 (238)
T PF13360_consen 232 G 232 (238)
T ss_dssp T
T ss_pred C
Confidence 5
|
... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0075 Score=72.04 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--ceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKT--LETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkl--l~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
..++.|++.+.-++++-.+|.+.+-+...+.. ++.++.|.-..+-++|+.. -+.++|||.|+.+..||++... +
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---T 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---c
Confidence 34688899999999999999999776665544 4588999999999999863 4689999999999999998421 0
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCC-Ce
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRR-GR 2153 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrT-Gk 2153 (2342)
..| +.-+-|...|.++.-+| .+.+++||+.|-.|++||.|+ ++
T Consensus 201 -----------------------------~i~------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 201 -----------------------------FIW------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred -----------------------------eee------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 001 11255888999998775 578999999999999999984 44
Q ss_pred EEE
Q 000085 2154 LIR 2156 (2342)
Q Consensus 2154 lIr 2156 (2342)
.+.
T Consensus 246 Pl~ 248 (339)
T KOG0280|consen 246 PLF 248 (339)
T ss_pred ccc
Confidence 443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=81.72 Aligned_cols=219 Identities=16% Similarity=0.109 Sum_probs=138.9
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
-|.+.|+.+..+ -.++++++|.||.++.|.-..-.. -..+..
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG-------------------------------------vEfVKh 48 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG-------------------------------------VEFVKH 48 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc-------------------------------------eeehhh
Confidence 488888887665 568999999999999997543100 022345
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEEecC--CcEEEEEecCC----cEEEEEeCCCeEEEEE
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEG----VIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG----~IlVwdssdGsI~I~d 2188 (2342)
+..|-..|.+++.+-++.++.|++. |..++++|+.+-..+.-++.. ...+-.+...| .+-+-...++.+.+++
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD 128 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD 128 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEEC
Confidence 6778889999999999999999887 999999999876554333221 11122222233 2333334556666666
Q ss_pred eCCce--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2189 LNGVL--VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2189 lnG~~--L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
-.+.. ......-|..+|.++.+++-+..+++....|... .|....+ ..| .++.
T Consensus 129 ~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVE------yWs~e~~----~qf---------------Pr~~ 183 (558)
T KOG0882|consen 129 GFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVE------YWSAEGP----FQF---------------PRTN 183 (558)
T ss_pred CcCCcCccceecccccCceEEEEeeccccceeeccccceeE------eecCCCc----ccC---------------cccc
Confidence 54322 1212222899999999999999888775444422 2222210 000 0111
Q ss_pred EEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.-|.+.+-.-+..+. ......+++.|+|+|..+.+-+.|..|+++...+..
T Consensus 184 -l~~~~K~eTdLy~f~-K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 184 -LNFELKHETDLYGFP-KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred -ccccccccchhhccc-ccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 113333333333333 345567899999999999999999999999976654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.022 Score=67.31 Aligned_cols=189 Identities=8% Similarity=-0.014 Sum_probs=114.8
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
....|+.++.-+.+.+|...+. ..... ....+..++.-+.-.|.+ .--+..++.|.++++.+++.+.....+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn-~~h~~----~cd~snn~v~~~~r~cd~--~~~~~i~sndht~k~~~~~~~s~~~~~- 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTN-DGHLY----QCDVSNNDVTLVKRYCDL--KFPLNIASNDHTGKTMVVSGDSNKFAV- 154 (344)
T ss_pred cccEEEeccccceeeeecccCc-cccee----eecccccchhhhhhhccc--ccceeeccCCcceeEEEEecCccccee-
Confidence 3455667767778889986541 11111 111222222211111111 113555678999999988765433322
Q ss_pred cCCC--CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2036 GHCA--PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2036 GHt~--~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
|.. .+..+++++|++++++.+....|..|.+..... ++. .
T Consensus 155 -h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se----------------------y~~---------------~ 196 (344)
T KOG4532|consen 155 -HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE----------------------YIE---------------N 196 (344)
T ss_pred -eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc----------------------eee---------------e
Confidence 333 388999999999999999999999998876311 000 0
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-EEEe---c-C--CcEEEEEecCCc--EEEEEeCCCeE
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI-RRLV---G-V--DAHAVSLSSEGV--IMTWNKLQHTL 2184 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI-rsL~---g-h--~vssLSfSpDG~--IlVwdssdGsI 2184 (2342)
..+...++.-.+..|+.....+|++..||++.|||++..... .... . | .++.+.|++-|. ++++.-.-+.+
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~ 276 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV 276 (344)
T ss_pred eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceE
Confidence 112223344568889999999999999999999999875432 2221 1 2 257788888663 45555445566
Q ss_pred EEEEeC
Q 000085 2185 SSFTLN 2190 (2342)
Q Consensus 2185 ~I~dln 2190 (2342)
++.++.
T Consensus 277 hv~D~R 282 (344)
T KOG4532|consen 277 HVVDTR 282 (344)
T ss_pred EEEEcc
Confidence 666664
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00045 Score=89.83 Aligned_cols=211 Identities=17% Similarity=0.154 Sum_probs=139.8
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+...++..|+..-||++|+-+.++|+.|+..|.|+++++.+|..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~------------------------------------ 1135 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM------------------------------------ 1135 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc------------------------------------
Confidence 34567788999999999999999999999999999999988632
Q ss_pred cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCC-CeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS--DLLLHSIRR-GRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG--tIrIWDLrT-GklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.....+|..+|+-+.-+.||...++.+.-. -..+|++.+ +...+++. +..++.|+..-...+.+.......
T Consensus 1136 ----e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~--ed~~vkFsn~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1136 ----EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD--EDKAVKFSNSLQFRALGTEADDAL 1209 (1516)
T ss_pred ----cccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc--ccceeehhhhHHHHHhcccccceE
Confidence 223578999999999999998877665433 467899864 44555554 345667776665566666556677
Q ss_pred EEEeCC-ceeeeecCC---CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc----------ccccccc
Q 000085 2186 SFTLNG-VLVARAKLP---LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT----------EDFDLAS 2251 (2342)
Q Consensus 2186 I~dlnG-~~L~s~~~~---Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~----------iaFspd~ 2251 (2342)
+|++.. .++.....+ ....-++..|+|+..+++ ++|. +|+...+..-+ -.|+|.+
T Consensus 1210 ~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGv--------LWDvR~~~aIh~FD~ft~~~~G~FHP~g 1278 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGV--------LWDVRIPEAIHRFDQFTDYGGGGFHPSG 1278 (1516)
T ss_pred EEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCce--------eeeeccHHHHhhhhhheecccccccCCC
Confidence 888753 222221211 223347889999999888 3333 46655442111 1233333
Q ss_pred ccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
....-+ -.|||++|.+.++.++ .-.-+.|.|+..|..++..
T Consensus 1279 ~eVIIN---------SEIwD~RTF~lLh~VP---~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1279 NEVIIN---------SEIWDMRTFKLLHSVP---SLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ceEEee---------chhhhhHHHHHHhcCc---cccceEEEeccCccchhhh
Confidence 221111 2479999999888776 2234678888888765543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.026 Score=73.98 Aligned_cols=118 Identities=11% Similarity=0.171 Sum_probs=88.5
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~-tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
.--+++..+++++.|+.-|.+++|+-.+++... ...+-.+.++.+.++++..++|.|+..|.|.|+-++.+.....
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~--- 113 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL--- 113 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc---
Confidence 345677888999999999999999988776543 3334445566677888888889999999999998876321100
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
..+... -..|...|+|++|++++..+++|..-|+|...-+.+
T Consensus 114 -----------------~~~t~~--------------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 -----------------DYVTPC--------------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -----------------eeeccc--------------cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 000000 123889999999999999999999999999988876
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.22 Score=59.14 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=53.3
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
-|++++.|+..|.+++.+.++|.....+..-...=......+++..+..|+.|++...-|..+..++.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 477899999999999999999977766553322112233466899999999999999999988766554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.052 Score=63.69 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=74.8
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2005 THDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
.+++..+++++.++.++.||..+|+.+..... .+.+.... ..++..++.++.|+.+..+|..++.......
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~------- 103 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIY------- 103 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEE-------
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeec-------
Confidence 33566666678999999999999988766554 22211111 2245677777788999999988875433210
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV 2161 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh 2161 (2342)
... ..... .........+++.++.+..+|.|..+|+++|+.+......
T Consensus 104 -------------------------~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 104 -------------------------LTS---SPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp -------------------------E-S---SCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred -------------------------ccc---ccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 000 00000 1111122223788888888999999999999998887653
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0091 Score=78.75 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=122.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
.+.++|++++ +++|+-|+.+|.|.+.+..... .+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~------------------------------------------~~~~ 74 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP------------------------------------------KTNF 74 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc------------------------------------------cccc
Confidence 5678899987 7899999999999999876521 1112
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecC-----CcEEEEEeCCCeEEEEEeC-
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSE-----GVIMTWNKLQHTLSSFTLN- 2190 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpD-----G~IlVwdssdGsI~I~dln- 2190 (2342)
.|... ..+|.+++|||.||+|.|-.+-+.+...++.-+ .+.+++++|| .+.++.++..| +.++.-+
T Consensus 75 ~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~w 147 (846)
T KOG2066|consen 75 DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNW 147 (846)
T ss_pred ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhh
Confidence 23332 567999999999999999999888877766544 4788999997 34556666666 6666543
Q ss_pred -CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2191 -GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2191 -G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
|...........++|.++.|. |.+++-++ |--|+|
T Consensus 148 lgnk~~v~l~~~eG~I~~i~W~--g~lIAWan------------------------------------------d~Gv~v 183 (846)
T KOG2066|consen 148 LGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN------------------------------------------DDGVKV 183 (846)
T ss_pred hcCccceeeecCccceEEEEec--CcEEEEec------------------------------------------CCCcEE
Confidence 222221122257899999996 77887554 233788
Q ss_pred EECCCCeEEEEEecCCCC-----CeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2270 LDLHTLKVFHVLKLGEGQ-----DITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~lgHs~-----~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
||..+.+.+..++..+.. --..+.|.++.+.+ -|..-+|+|..+.
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV--IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV--IGWGDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCeEE--EecCCeEEEEEEe
Confidence 888888877777644421 13456777666432 3444466666654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.019 Score=76.00 Aligned_cols=167 Identities=10% Similarity=0.085 Sum_probs=115.7
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
+++++-|+-+|.|++++.... . .+...|... ..+|.+++|||.||+|.|-.+.+....++. .....+.++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksi 118 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSI 118 (846)
T ss_pred cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeE
Confidence 678999999999999997643 2 444445544 567999999999999999988876554433 234456777
Q ss_pred cccCC-----CCCceeecCCCccc----cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2088 GNSIG-----SSTPANASADKSRR----RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2088 s~SpD-----G~~Las~s~D~s~~----~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
+++|+ .+.+++++..+... |--......+..-.++|.++.|. |++++-++.+| |+|||+.+++.+..+
T Consensus 119 al~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred EeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence 88886 34455555544322 32222223466668899999995 88888888775 899999999988877
Q ss_pred ecCC--------cEEEEEecCCcEEE-EEeCCCeEEEEEeC
Q 000085 2159 VGVD--------AHAVSLSSEGVIMT-WNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2159 ~gh~--------vssLSfSpDG~IlV-wdssdGsI~I~dln 2190 (2342)
.... ...+.|.++.++++ |+ .+|.+..+.
T Consensus 196 ~~p~~~~R~e~fpphl~W~~~~~LVIGW~---d~v~i~~I~ 233 (846)
T KOG2066|consen 196 PPPSQSVRPELFPPHLHWQDEDRLVIGWG---DSVKICSIK 233 (846)
T ss_pred CCCCCCCCcccCCCceEecCCCeEEEecC---CeEEEEEEe
Confidence 6532 24677887776554 54 346666654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.16 Score=61.22 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=25.6
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAK 2029 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgk 2029 (2342)
++||||+.+||.+...|+|+++|+.+..
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccce
Confidence 8999999999999999999999987643
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.003 Score=76.37 Aligned_cols=160 Identities=11% Similarity=0.117 Sum_probs=112.5
Q ss_pred EEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2014 GHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2014 GS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
.+.+-.|-+-|+.+|.. +.+. ....|.++.|...+++++.|.+.|.|.+.|++......
T Consensus 230 ~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~------------------- 288 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN------------------- 288 (425)
T ss_pred ccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC-------------------
Confidence 34567788889888643 3333 56779999999889999999999999999998741100
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeE---EEEEecCCc----EE
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRL---IRRLVGVDA----HA 2165 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGkl---IrsL~gh~v----ss 2165 (2342)
..+.+.+ -|...|+|+..-. +++.+++.+.+|+|++||++--++ +++..+|-. .-
T Consensus 289 ----------------~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~ 351 (425)
T KOG2695|consen 289 ----------------GWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLP 351 (425)
T ss_pred ----------------CcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccc
Confidence 0122233 3889999998766 788999999999999999997766 888888742 22
Q ss_pred EEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC---CCCCeEEEEEc
Q 000085 2166 VSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP---LSGSIGCMEIS 2211 (2342)
Q Consensus 2166 LSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~---Hs~~ItsLafS 2211 (2342)
+-+.+...+++....|...++|.++ |..+.+...+ ....+.+++|.
T Consensus 352 ~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 352 AHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 3345555566667778888899987 5555544433 22345555553
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.032 Score=68.61 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=121.0
Q ss_pred EEEcCCCCEEEEEE-----cCCcEEEEecC-CcccceecccCCCCeEEEEecCCCCEEEEEe------------------
Q 000085 2002 VSITHDKEIITGGH-----VDGSIKLLTSD-GAKTLETASGHCAPVTCLALSSDSNFLVTGS------------------ 2057 (2342)
Q Consensus 2002 VafSpDGklLASGS-----~DGsIrVWDl~-tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS------------------ 2057 (2342)
-+||+||++|++.- ..|.|-|||.. +.+.+..+..|--.-..+.+.|||+.|+.+-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 57999999888764 35789999998 5567777777765556788999998777653
Q ss_pred CCCceEEEeccCCcccccc-c--cCCCCCCccccccCCCCCceeecCCCccc--------cccCCceEEe-------cCC
Q 000085 2058 QDTTILLWRIHRAFTSRTG-T--IEPSSGMGTPGNSIGSSTPANASADKSRR--------RRIEGPIHVL-------RGH 2119 (2342)
Q Consensus 2058 ~DGTVrVWDl~tg~~i~t~-~--~~~~~~V~svs~SpDG~~Las~s~D~s~~--------~~i~~~l~~L-------~GH 2119 (2342)
.+-.+..-|..++..+.+. . ..+...+.-+++..+|..+...-+.+-.. ++....+..+ ..-
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL 215 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence 1233444555666544432 1 33455677788888877665554432211 1112222222 223
Q ss_pred CCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeE
Q 000085 2120 HREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI 2184 (2342)
.+.|-+|+++.++.++ +|+-..|.+.+||..+|+++.......+.-++...++ +++..-.|.+
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~--f~~ssG~G~~ 279 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG--FLVSSGQGQL 279 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc--eEEeCCCccE
Confidence 4678999999999877 4555788999999999999998887777777777777 4444444543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.024 Score=74.38 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=80.3
Q ss_pred EEEEcCCCCEEEEEE----cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2001 VVSITHDKEIITGGH----VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+|+|...+++.++ ..|+|.||- ++|++.....- .-.+++++|+|..-.|+.|=.-|.+.+|...+...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---- 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---- 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCcee----
Confidence 356788888777765 467888884 45655433221 12367799999988888888889999998776321
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
-.....|..+|..+.||++|..++|+..-|.|.+|...
T Consensus 94 ------------------------------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 ------------------------------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ------------------------------------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 12235689999999999999999999999999999764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.01 Score=78.89 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=100.0
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---------CCceEEEeccCCcc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---------DTTILLWRIHRAFT 2072 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---------DGTVrVWDl~tg~~ 2072 (2342)
.-.-.+++++.+|...|+|.+-|..+.+.++++..|++.|..+.. .|+.|+||+. |..|+|||++....
T Consensus 181 ~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 181 TIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred EEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 334556789999999999999999999999999999999987766 5999999974 66789999998654
Q ss_pred ccccccCCCCCCccccccCCCC-CceeecCCCc-cccc---cCCc---eEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSS-TPANASADKS-RRRR---IEGP---IHVLRGHHREILCCCVSSDLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~-~Las~s~D~s-~~~~---i~~~---l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtI 2144 (2342)
+... ..+.+...+.+.|.-. .+++.+..+. ...+ ...+ +..+......+..++++++++.++.|..+|.|
T Consensus 259 l~PI--~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 259 LSPI--QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cCCc--ccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 3322 1222234445555322 2233322221 1122 1122 22233334558999999999999999999999
Q ss_pred EEEEC
Q 000085 2145 LLHSI 2149 (2342)
Q Consensus 2145 rIWDL 2149 (2342)
.+|.-
T Consensus 337 ~~wa~ 341 (1118)
T KOG1275|consen 337 NLWAD 341 (1118)
T ss_pred eeecC
Confidence 99973
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.016 Score=72.30 Aligned_cols=185 Identities=13% Similarity=0.049 Sum_probs=120.3
Q ss_pred CCCEEEEEEcCCcEEEEecCC---cccceecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCcccccc-ccCCC
Q 000085 2007 DKEIITGGHVDGSIKLLTSDG---AKTLETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTG-TIEPS 2081 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~t---gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~-~~~~~ 2081 (2342)
-.+++.+++.||.++.|--.. -+.+..+..|...|.+++.+-+|..+.|++. |..++++|+.+.....-. ....+
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 456899999999999997543 2345667789999999999999999999887 999999999875433222 11112
Q ss_pred CCCccccccCCC--CCceeecCCCcc--cccc----CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--
Q 000085 2082 SGMGTPGNSIGS--STPANASADKSR--RRRI----EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR-- 2151 (2342)
Q Consensus 2082 ~~V~svs~SpDG--~~Las~s~D~s~--~~~i----~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-- 2151 (2342)
..+.++ .++.. ..+++...+... ..+. ......-.-|..+|.++.+.+-++.++|....|.|..|....
T Consensus 99 g~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~ 177 (558)
T KOG0882|consen 99 GFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPF 177 (558)
T ss_pred CceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcc
Confidence 211111 11111 122222222111 1111 122333345999999999999999999999999999999862
Q ss_pred ----CeEEEEEec-----------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2152 ----GRLIRRLVG-----------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2152 ----GklIrsL~g-----------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
+.....++. ....++.++++|..+..-..+..|+++...+.
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 222222221 12578899999976655556777888777643
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.015 Score=77.27 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=113.5
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCcc
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGT 2086 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~s 2086 (2342)
++..++.|+-...+..+|+.+.+..+...-....|+-+.. +++++.+|...|+|.+-|.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~---------------- 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF---------------- 207 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC----------------
Confidence 4556777777778888999988877766544445666655 5899999999999999998874
Q ss_pred ccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC---------CCcEEEEECCCCeEEEE
Q 000085 2087 PGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD---------SSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~---------DGtIrIWDLrTGklIrs 2157 (2342)
+.++++..|++.|..+.+ .|+.++|||. |..|+|||+|.-+.+.-
T Consensus 208 ------------------------~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P 261 (1118)
T KOG1275|consen 208 ------------------------ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP 261 (1118)
T ss_pred ------------------------ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence 456778999999987654 6899999875 66789999987665544
Q ss_pred EecC-CcEEEEEecCC-cEEEEEeCCCeEEEEE---eCCceeeee-cCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2158 LVGV-DAHAVSLSSEG-VIMTWNKLQHTLSSFT---LNGVLVARA-KLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2158 L~gh-~vssLSfSpDG-~IlVwdssdGsI~I~d---lnG~~L~s~-~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+.-+ ....+.|.|.= ..++.....|..+..+ +........ ..+....+.++++|++|+.++.|..+|..+
T Consensus 262 I~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~ 337 (1118)
T KOG1275|consen 262 IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVN 337 (1118)
T ss_pred cccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEe
Confidence 3321 11222222221 1112222233333333 111111111 111345599999999999999997777633
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.23 Score=61.99 Aligned_cols=262 Identities=13% Similarity=0.114 Sum_probs=145.5
Q ss_pred CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccCCccccccccC------CC
Q 000085 2018 GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHRAFTSRTGTIE------PS 2081 (2342)
Q Consensus 2018 GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~tg~~i~t~~~~------~~ 2081 (2342)
+.++|+|.++++.+..+..- -.-.+.++||++.+++++ +.-.|.+||..+......+... ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 46889999998887766532 233467899999988753 3456899999986544433111 11
Q ss_pred CCCccccccCCCCCceeecCCCc---ccccc--CCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECC-CCeE
Q 000085 2082 SGMGTPGNSIGSSTPANASADKS---RRRRI--EGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIR-RGRL 2154 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s---~~~~i--~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLr-TGkl 2154 (2342)
.......++.|++++.+....-. ...++ .+.+..+.. . -|.-+-|. .+-+.+-|.||.+.-..+. .|+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--P--GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--T--SEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--C--CEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 23445567778887765543311 11121 111111111 1 13333343 2568888999999988887 5665
Q ss_pred EEEEec--C--C---cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec---C-C--------CCCCeEEEEEccCCC
Q 000085 2155 IRRLVG--V--D---AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK---L-P--------LSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2155 IrsL~g--h--~---vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~---~-~--------Hs~~ItsLafSPDGk 2215 (2342)
.++... + . ...-+++..+..++|-+-+|.++..++.|....... . . -.+.-.-+++++...
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 533211 1 1 112234455666677777888887777654321100 0 0 012223355555444
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
.|++--..+. .|.++.+ ...|.++|+.+++.+..+.+.| ++.+|.++
T Consensus 251 rlyvLMh~g~--------~gsHKdp-----------------------gteVWv~D~~t~krv~Ri~l~~--~~~Si~Vs 297 (342)
T PF06433_consen 251 RLYVLMHQGG--------EGSHKDP-----------------------GTEVWVYDLKTHKRVARIPLEH--PIDSIAVS 297 (342)
T ss_dssp EEEEEEEE----------TT-TTS------------------------EEEEEEEETTTTEEEEEEEEEE--EESEEEEE
T ss_pred eEEEEecCCC--------CCCccCC-----------------------ceEEEEEECCCCeEEEEEeCCC--ccceEEEc
Confidence 4433321111 0111111 2468889999999999998544 58899999
Q ss_pred cCCC-EEEEE-eCCCcEEEEeCCCC
Q 000085 2296 KDNT-NLLVS-TADKQLIVFTDPAL 2318 (2342)
Q Consensus 2296 PDG~-~LaSG-SsDGsIrVWDi~sL 2318 (2342)
.|.+ .|++. ..++.|.|||..+.
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT-
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 9876 55544 45899999996655
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0044 Score=80.16 Aligned_cols=184 Identities=14% Similarity=0.172 Sum_probs=112.8
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC-CCEEEEEEcCCcEEEEecCCc-ccceecc
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD-KEIITGGHVDGSIKLLTSDGA-KTLETAS 2035 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD-GklLASGS~DGsIrVWDl~tg-kll~tL~ 2035 (2342)
..+++++-|..+..|+....... +-..-..++ + ..-|.|+-- +..+|+ +..+.|+|||...| ..+.+++
T Consensus 128 dVlatcsvdt~vh~wd~rSp~~p----~ys~~~w~s-~---asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K 198 (1081)
T KOG0309|consen 128 DVLATCSVDTYVHAWDMRSPHRP----FYSTSSWRS-A---ASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLK 198 (1081)
T ss_pred cceeeccccccceeeeccCCCcc----eeeeecccc-c---CceeeecccCcchhhh-ccCCceEEEeccCCCcceEEec
Confidence 45677888888888875541110 000001111 1 123677654 445554 55778999999865 5678899
Q ss_pred cCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCce------------eecCC
Q 000085 2036 GHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPA------------NASAD 2102 (2342)
Q Consensus 2036 GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~La------------s~s~D 2102 (2342)
+|...|..++|.. ....+.+++.|++|+.||.................+....+.|-|.-.. ....+
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 9999999999975 3457889999999999999865332222222222333333333222110 00111
Q ss_pred Ccccc---ccCCceEEecCCCCCeEEEEEecCC----------CEEEEEeCCCcEEEEECC
Q 000085 2103 KSRRR---RIEGPIHVLRGHHREILCCCVSSDL----------GVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2103 ~s~~~---~i~~~l~~L~GHs~~Vt~VafSPDg----------~lLaSGS~DGtIrIWDLr 2150 (2342)
....| +...+++.+.||++.|...-|-..+ -.++|=|.|.++++|-+.
T Consensus 279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 11112 3467899999999998776664322 268999999999999875
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.067 Score=70.32 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=76.6
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce---
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE--- 2032 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~--- 2032 (2342)
.++.++-|++-+.+.+|+.+++.... +.. .++......++++++..++|+|+..|.|.|+-+..+....
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~-------~~~-~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRK-------LKN-EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhc-------ccc-cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 45667777777888888866532211 111 0122233457789999999999999999999887643211
Q ss_pred --ec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2033 --TA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2033 --tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
.. ..|...|||++|++|+..+++|..-|+|..-.++.
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 23788999999999999999999999999888877
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.36 Score=62.23 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=122.5
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc-ccccCCCCCCccccccC-CCCCceeecCCCccc--cccCCceEE
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR-TGTIEPSSGMGTPGNSI-GSSTPANASADKSRR--RRIEGPIHV 2115 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~-t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s~~--~~i~~~l~~ 2115 (2342)
.|+++.|+++..-|+.|...|.|.||.+...+.-. .... .........++. ++....+...+.... ..--.+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP-PDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC-cccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58999999999999999999999999987643221 0000 000000000000 000000000000000 000134556
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC----------cEEEEEe-----cCC---cEEEE
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----------AHAVSLS-----SEG---VIMTW 2177 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~----------vssLSfS-----pDG---~IlVw 2177 (2342)
+....++|++++.| |=.+++.|..+|.+.|.|+|....+..-.-.+ ++.+.|+ .|+ -.++.
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 66678999999997 66789999999999999999888877632111 3444443 344 34556
Q ss_pred EeCCCeEEEEEeC----Cceee---eecCCCCCCeEEEE-EccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccc
Q 000085 2178 NKLQHTLSSFTLN----GVLVA---RAKLPLSGSIGCME-ISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDL 2249 (2342)
Q Consensus 2178 dssdGsI~I~dln----G~~L~---s~~~~Hs~~ItsLa-fSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFsp 2249 (2342)
+...|.+.+|.+. |.... .....+.+.|..+. ++.+...-+.+. ...+..+...
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At---------~~~~~~l~~g--------- 222 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALAT---------ISAMQGLSKG--------- 222 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-B---------HHHHHGGGGT---------
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCc---------hhHhhccccC---------
Confidence 6777998888763 21110 00112444444443 212211111010 0000111100
Q ss_pred ccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-----cCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2250 ASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN-----KDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2250 d~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-----PDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
. ......+...+..++|+...+.+..++.. .....+..+.+- ..+..|++-..+|.|++|.+|.|+
T Consensus 223 --~-~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 223 --I-SIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp -------EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred --C-CcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 0 00111223357889999999888777665 333334445552 356678888999999999999886
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.28 Score=62.16 Aligned_cols=258 Identities=12% Similarity=0.043 Sum_probs=139.6
Q ss_pred cCCCCEEEEEE---------cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 2005 THDKEIITGGH---------VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2005 SpDGklLASGS---------~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|+.++-.. ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777665532 346789999998765544433 56788999999999998875 67899998766532211
Q ss_pred cccC----------------CCCCCccccccCCCCCceeecCCCccc--ccc---------------------CC--c--
Q 000085 2076 GTIE----------------PSSGMGTPGNSIGSSTPANASADKSRR--RRI---------------------EG--P-- 2112 (2342)
Q Consensus 2076 ~~~~----------------~~~~V~svs~SpDG~~Las~s~D~s~~--~~i---------------------~~--~-- 2112 (2342)
...+ .-..-..+-|||||+.++....|.... ... +. +
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 1111 022345677999999997765542211 000 00 0
Q ss_pred -eEEe----------------cCCCCCeEEEEEecCCCEEE--EEeCCC---cEEEEECCCCeEEEEEec--CC----cE
Q 000085 2113 -IHVL----------------RGHHREILCCCVSSDLGVVV--SCSDSS---DLLLHSIRRGRLIRRLVG--VD----AH 2164 (2342)
Q Consensus 2113 -l~~L----------------~GHs~~Vt~VafSPDg~lLa--SGS~DG---tIrIWDLrTGklIrsL~g--h~----vs 2164 (2342)
+..+ ..-...+..+.|.+++..++ ..+.+. .+.+.|..++.+...+.. .. ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 0000 11233467788888877333 333333 456677777654333322 11 23
Q ss_pred EEEEe-cCCcEEEEE-eCCCe--EEEEEeCCceeeeecCCCCCCeEE-EEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2165 AVSLS-SEGVIMTWN-KLQHT--LSSFTLNGVLVARAKLPLSGSIGC-MEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2165 sLSfS-pDG~IlVwd-ssdGs--I~I~dlnG~~L~s~~~~Hs~~Its-LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
...+. +++.-++|- ..+|- |.+++..+...... ....-.|.. +.++++++.+.-.+....
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l-T~G~~~V~~i~~~d~~~~~iyf~a~~~~-------------- 303 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL-TSGDWEVTSILGWDEDNNRIYFTANGDN-------------- 303 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES-S-SSS-EEEEEEEECTSSEEEEEESSGG--------------
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc-ccCceeecccceEcCCCCEEEEEecCCC--------------
Confidence 44443 666655554 45664 45555556554432 224455644 677888777653331100
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECC-CCeEEEEEecCCCCCe-EEEEEecCCCEEEEE
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH-TLKVFHVLKLGEGQDI-TALALNKDNTNLLVS 2304 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~-Tgk~L~tL~lgHs~~I-tsLafSPDG~~LaSG 2304 (2342)
.....|+.-++. .+. +..+. ..... ..+.|||+|++++..
T Consensus 304 ----------------------p~~r~lY~v~~~~~~~-~~~LT--~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 304 ----------------------PGERHLYRVSLDSGGE-PKCLT--CEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ----------------------TTSBEEEEEETTETTE-EEESS--TTSSTTEEEEE-TTSSEEEEE
T ss_pred ----------------------CCceEEEEEEeCCCCC-eEecc--CCCCCceEEEECCCCCEEEEE
Confidence 013457777777 444 34444 22222 599999999988744
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.1 Score=72.05 Aligned_cols=201 Identities=14% Similarity=0.150 Sum_probs=120.1
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec
Q 000085 2038 CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR 2117 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~ 2117 (2342)
.+.|.++.|..+++-++.+..+|.|.+-|..+... ........
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~----------------------------------- 110 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDN----------------------------------- 110 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccC-----------------------------------
Confidence 36799999999999999999999999987776421 11122233
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC----CC-------------------CeEEEEEec--------------
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSI----RR-------------------GRLIRRLVG-------------- 2160 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL----rT-------------------GklIrsL~g-------------- 2160 (2342)
.|.+++|+||+.+++-.+.++++.+-+- -. |+.-..|++
T Consensus 111 ----GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 111 ----GISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred ----ceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence 4445555555555544444444443221 00 000001111
Q ss_pred ---------CCcEEEEEecCCcEEEEE-----eCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2161 ---------VDAHAVSLSSEGVIMTWN-----KLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2161 ---------h~vssLSfSpDG~IlVwd-----ssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
..-..++|--||.+++.. .....+++|+-+|. +.....+..+.=.+++|-|.|..+++-....+
T Consensus 187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s- 264 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS- 264 (1265)
T ss_pred ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccch-hhcccCcccccccceeecCCCCeEeeeeecCC-
Confidence 012458888999888763 22368999998853 33333334455678999999998886643222
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC---eEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL---KVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg---k~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
|+.|.++.-+.. ...-.++ .....|..++|+.++..|++
T Consensus 265 -------------------------------------d~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 265 -------------------------------------DSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred -------------------------------------CCcEEEEecCCccccccccCCc-ccccchheeeecCCCCceee
Confidence 445666654332 2111122 12234899999999999887
Q ss_pred ---EeCCCcEEEEeCCCCC
Q 000085 2304 ---STADKQLIVFTDPALS 2319 (2342)
Q Consensus 2304 ---GSsDGsIrVWDi~sLs 2319 (2342)
......|++|...+..
T Consensus 307 ~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 307 VTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eecccccceEEEEEecCeE
Confidence 4444559999977654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.011 Score=76.66 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=60.7
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.+.|++++|+...++.|+.||+|.+||...+.. .+..+.-..+.++|+|+|..++.|+.-|.+.+||+.-.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 466799999999999999999999999876532 23345566899999999999999999999999999864
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.28 Score=62.96 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCC--C--------CeE-EEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHC--A--------PVT-CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt--~--------~Vt-cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..+++++.+|.+.-+|..+|+.+-...-.. . .+. .+.. ++..++.++.++.+..+|..+++...+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 4466667778889999998888765432211 0 010 1112 3567778889999999999998766554
Q ss_pred ccCCCCCCcc-c--------cccCCCCCceeecCCCccccccCCc--eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2077 TIEPSSGMGT-P--------GNSIGSSTPANASADKSRRRRIEGP--IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLL 2145 (2342)
Q Consensus 2077 ~~~~~~~V~s-v--------s~SpDG~~Las~s~D~s~~~~i~~~--l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIr 2145 (2342)
.... .+.+ . ....++...+....++...|..... .....+...++ + .+..++.++.+|.+.
T Consensus 147 ~~~~--~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 147 KVAG--EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----T--AFGGAIVGGDNGRVS 218 (394)
T ss_pred cCCC--ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----E--ECCEEEEEcCCCEEE
Confidence 2111 1110 0 0111222222222233334433211 00111111111 1 134567788889999
Q ss_pred EEECCCCeEEEEE
Q 000085 2146 LHSIRRGRLIRRL 2158 (2342)
Q Consensus 2146 IWDLrTGklIrsL 2158 (2342)
.+|..+|+.+...
T Consensus 219 a~d~~~G~~~W~~ 231 (394)
T PRK11138 219 AVLMEQGQLIWQQ 231 (394)
T ss_pred EEEccCChhhhee
Confidence 9999998876554
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.6 Score=56.33 Aligned_cols=244 Identities=12% Similarity=0.092 Sum_probs=123.6
Q ss_pred eeEEEEEcCCCCEEEEE-EcCC----cEEEEecCCccccee-cccCCCCeEEEEecCCCCEEEEEeCCC-----------
Q 000085 1998 SSAVVSITHDKEIITGG-HVDG----SIKLLTSDGAKTLET-ASGHCAPVTCLALSSDSNFLVTGSQDT----------- 2060 (2342)
Q Consensus 1998 Svt~VafSpDGklLASG-S~DG----sIrVWDl~tgkll~t-L~GHt~~VtcLAfSPDG~~LaSGS~DG----------- 2060 (2342)
....+++||||+++|.+ +..| .++++|+.+|+.+.. +..- .-..+.|.+|++.|+....|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34458899999988765 4444 499999999976543 2221 123499999988877665443
Q ss_pred ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCC--eEEEEEecCCCEEEEE
Q 000085 2061 TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHRE--ILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~--Vt~VafSPDg~lLaSG 2138 (2342)
.|..|++.+... .....+.+.... ...+..++|+++++..
T Consensus 203 ~v~~~~~gt~~~--------------------------------------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~ 244 (414)
T PF02897_consen 203 QVYRHKLGTPQS--------------------------------------EDELVFEEPDEPFWFVSVSRSKDGRYLFIS 244 (414)
T ss_dssp EEEEEETTS-GG--------------------------------------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred EEEEEECCCChH--------------------------------------hCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence 244555444211 111223332222 4577788999887643
Q ss_pred e-CC---CcEEEEECCCC-----eEEEEEecC-CcEEEEEecCCcEEEEEeC---CCeEEEEEeCCce---eeeecCCCC
Q 000085 2139 S-DS---SDLLLHSIRRG-----RLIRRLVGV-DAHAVSLSSEGVIMTWNKL---QHTLSSFTLNGVL---VARAKLPLS 2202 (2342)
Q Consensus 2139 S-~D---GtIrIWDLrTG-----klIrsL~gh-~vssLSfSpDG~IlVwdss---dGsI~I~dlnG~~---L~s~~~~Hs 2202 (2342)
+ .. ..+.+.|+..+ ......... ..........+.+++.... .+.|...++.... -.....++.
T Consensus 245 ~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 245 SSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED 324 (414)
T ss_dssp EESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S
T ss_pred EEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC
Confidence 3 22 34788888764 222222222 2222222334444443322 2455555554321 111223344
Q ss_pred CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe
Q 000085 2203 GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK 2282 (2342)
Q Consensus 2203 ~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~ 2282 (2342)
..+.-..+...+.+|+.....+. ...|+++|+..+.....+.
T Consensus 325 ~~~~l~~~~~~~~~Lvl~~~~~~--------------------------------------~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 325 EDVSLEDVSLFKDYLVLSYRENG--------------------------------------SSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp SSEEEEEEEEETTEEEEEEEETT--------------------------------------EEEEEEEETT-TEEEEEEE
T ss_pred CceeEEEEEEECCEEEEEEEECC--------------------------------------ccEEEEEECCCCcEEeeec
Confidence 43333333334555554432111 3469999998455555555
Q ss_pred cCCCCCeEEEEEecCCCEEEEE--e--CCCcEEEEeCCCCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVS--T--ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSG--S--sDGsIrVWDi~sLs 2319 (2342)
..-.+.|..+...+++..+... | .-+++..||..+..
T Consensus 367 ~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 367 LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 4444556666666666544422 2 34577778865554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.5 Score=53.13 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=45.5
Q ss_pred cCCCCEEEEEEcCCcEEEEecC-CcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 2005 THDKEIITGGHVDGSIKLLTSD-GAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~-tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
...++.|+.|+.+| +.+++.. .....+.. +...|+.+...++-+.|+.-+ |+++.++++....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE 67 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence 44577889998888 8999983 33333332 233499999999877777665 5999999998743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0014 Score=85.65 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=62.2
Q ss_pred ccccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHhccccCCCCCCC-CCCCCCcce
Q 000085 1260 KDFNALSYKFIAVLVASFALARNMQRSEIDRRSQVDLISRHRWCT-GMRAWRKLIHCLIEMKCLFGPFED-HLSDPRRIF 1337 (2342)
Q Consensus 1260 r~~~e~~~k~~~~~v~~~~lar~~~R~E~~r~~~l~~~~~~r~~~-a~r~W~ki~~~Lt~ERGlwGPw~~-~~~s~~~~f 1337 (2342)
||-+.+-+|+-+++.+- .+|..--|+-+.....+..+.+..+.. +...|.-...+|.+|||+|.--.. ...+ ..
T Consensus 2434 rd~skldlkhw~q~ner-ryalev~rdams~elrvvrqnkyg~ilhaes~w~thlqqlvhergifpmr~s~g~ed---~~ 2509 (2799)
T KOG1788|consen 2434 RDTSKLDLKHWEQVNER-RYALEVVRDAMSAELRVVRQNKYGLILHAESVWPTHLQQLVHERGIFPMRISHGVED---LK 2509 (2799)
T ss_pred ccccccchHHHHHHhHH-HHHHHHHHHHhhhhheeeecccceEEEeecccchHHHHHHHHhcCCcceecccCcCC---cc
Confidence 44556666776665442 223333333333333334344444433 788999999999999999842222 1222 35
Q ss_pred eEeeccCCccccceeecccCCCCC
Q 000085 1338 WKLDFMESSSRMRRCLRRNYMGSD 1361 (2342)
Q Consensus 1338 WKLD~tEd~sRMRrRLvRNy~fs~ 1361 (2342)
|.|..-|+|.|||+||.|...-.+
T Consensus 2510 wqlcpiegpyrmrkklercklkid 2533 (2799)
T KOG1788|consen 2510 WQLCPIEGPYRMRKKLERCKLKID 2533 (2799)
T ss_pred eeecCCcCcHHHHHHHHhhhhhhH
Confidence 999999999999999999876443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.011 Score=46.73 Aligned_cols=38 Identities=45% Similarity=0.768 Sum_probs=33.7
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
+....+..|...|+++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556678999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.13 Score=64.15 Aligned_cols=70 Identities=10% Similarity=0.184 Sum_probs=62.0
Q ss_pred EEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCc
Q 000085 2001 VVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 2001 ~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
.++|||..+ ++..++.++.|+|.|+.+...+.++..| ..+++++|.-|. ++|+.|-..|.|.|+|++...
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 399999998 8889999999999999999888888888 789999998764 678888899999999998743
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.27 Score=64.25 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=62.7
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
.....|.|++++|+.+.++.|+.||+|.+||..++.....-..--...++|+|+|.+++.+...|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 46778999999999999999999999999999877544332223368999999999999999999999999753
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.47 Score=60.26 Aligned_cols=284 Identities=12% Similarity=0.063 Sum_probs=119.0
Q ss_pred EEcCCCC-EEEEEEcCCc--EEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2003 SITHDKE-IITGGHVDGS--IKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2003 afSpDGk-lLASGS~DGs--IrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
+|.+||+ +|.++..||. +.+.|+.+++..+--.+-.+......++++++.++-.....+|+--|+.+.+..... ..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-EC
Confidence 5789997 4555555664 666688888766544432232334567788888877666678888888875432211 11
Q ss_pred CCCCCccccc--cCCCCCceeecCCCc-----cccc------------------c-CCceEEecCCCCCeEEEEEecCCC
Q 000085 2080 PSSGMGTPGN--SIGSSTPANASADKS-----RRRR------------------I-EGPIHVLRGHHREILCCCVSSDLG 2133 (2342)
Q Consensus 2080 ~~~~V~svs~--SpDG~~Las~s~D~s-----~~~~------------------i-~~~l~~L~GHs~~Vt~VafSPDg~ 2133 (2342)
...-+....+ +.|+..++....... ..|. + .+....+..-...+..+.|+|...
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 1211211222 334444322211100 0000 0 122233333345667888998655
Q ss_pred EEEEEeC----CC-cEEEEECCC-CeEEEEEecCC----cEEEEEecCCcEEEEEeC--CC---eEEEEEeCCceeeeec
Q 000085 2134 VVVSCSD----SS-DLLLHSIRR-GRLIRRLVGVD----AHAVSLSSEGVIMTWNKL--QH---TLSSFTLNGVLVARAK 2198 (2342)
Q Consensus 2134 lLaSGS~----DG-tIrIWDLrT-GklIrsL~gh~----vssLSfSpDG~IlVwdss--dG---sI~I~dlnG~~L~s~~ 2198 (2342)
.++.=|. |. .-+||-+++ |...+.+..+. +..=-|++||..+.+... .+ .|.-++.....-..
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-- 278 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-- 278 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE--
Confidence 4444433 32 247787764 44444433222 233357899998888643 22 23333443211111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEE
Q 000085 2199 LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVF 2278 (2342)
Q Consensus 2199 ~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L 2278 (2342)
........-.-.++||++++.-+.+...+. ... .....-.+.-|+++++..+...
T Consensus 279 ~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v---------~~~----------------~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 279 LMEMPWCSHFMSSPDGKLFVGDGGDAPVDV---------ADA----------------GGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EEEE-SEEEEEE-TTSSEEEEEE--------------------------------------------EEEEEETTTTEEE
T ss_pred EEeCCceeeeEEcCCCCEEEecCCCCCccc---------ccc----------------ccceecCCcEEEEeccccCcee
Confidence 111123344556789988874332111000 000 0000012456888999887653
Q ss_pred EEEe--------cCCCC-CeEEEEEecCCCEEE-EEeCCCcEEEEe
Q 000085 2279 HVLK--------LGEGQ-DITALALNKDNTNLL-VSTADKQLIVFT 2314 (2342)
Q Consensus 2279 ~tL~--------lgHs~-~ItsLafSPDG~~La-SGSsDGsIrVWD 2314 (2342)
.... .++.. .=....|+|||++++ ++...|...||-
T Consensus 334 ~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 334 KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 2222 01111 124578999999877 455677777765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.22 Score=64.76 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=95.8
Q ss_pred EEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe---CC-CceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2020 IKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS---QD-TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2020 IrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS---~D-GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
+.+-|.+ |...+.+..-...+..-+|+|++..++..+ .. ..+.++++.++....
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------------------- 232 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--------------------- 232 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce---------------------
Confidence 4444444 444555554556677788999988766542 22 357777877753211
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCeEEEEEecCC--cEEEEEec
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD--LLLHSIRRGRLIRRLVGVD--AHAVSLSS 2170 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt--IrIWDLrTGklIrsL~gh~--vssLSfSp 2170 (2342)
+..+.++. ..-+|+|||+.|+ +...||. |++.|+.+++..+ +.... ...=+|+|
T Consensus 233 -----------------i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp 291 (425)
T COG0823 233 -----------------ILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP 291 (425)
T ss_pred -----------------eeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC
Confidence 11223333 3456899998775 4556664 6667877776433 43221 23567899
Q ss_pred CCcEEEEEeCC-C--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2171 EGVIMTWNKLQ-H--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2171 DG~IlVwdssd-G--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
||+.+++.... | .|.+++.+|......... .+.-..-.|+|||++++..+
T Consensus 292 dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~-~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 292 DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS-GGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCCEEEEEeCCCCCcceEEECCCCCceeEeecc-CCCCcCccCCCCCCEEEEEe
Confidence 99988887543 4 466666667655444332 22222778999999999775
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.48 Score=63.85 Aligned_cols=132 Identities=13% Similarity=0.203 Sum_probs=83.4
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH 2119 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH 2119 (2342)
.|+|+ ++.+..+|.|+.||.|.+.+-.- ..++.++.+
T Consensus 27 ~isc~--~s~~~~vvigt~~G~V~~Ln~s~-----------------------------------------~~~~~fqa~ 63 (933)
T KOG2114|consen 27 AISCC--SSSTGSVVIGTADGRVVILNSSF-----------------------------------------QLIRGFQAY 63 (933)
T ss_pred ceeEE--cCCCceEEEeeccccEEEecccc-----------------------------------------eeeehheec
Confidence 56654 66788999999999887665332 111233444
Q ss_pred CCC-eEEEEEecCCCEEEEEeCCC-----cEEEEECCCC------eEEE--EEec-------CCcEEEEEecCCcEEEEE
Q 000085 2120 HRE-ILCCCVSSDLGVVVSCSDSS-----DLLLHSIRRG------RLIR--RLVG-------VDAHAVSLSSEGVIMTWN 2178 (2342)
Q Consensus 2120 s~~-Vt~VafSPDg~lLaSGS~DG-----tIrIWDLrTG------klIr--sL~g-------h~vssLSfSpDG~IlVwd 2178 (2342)
... |+.+-...+..++++.+.|+ .++|||+... +++. ++.+ ....+++++.+-..++.+
T Consensus 64 ~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~G 143 (933)
T KOG2114|consen 64 EQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCG 143 (933)
T ss_pred chhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEE
Confidence 444 33333333345677776664 4899998632 3442 2222 125789999999999999
Q ss_pred eCCCeEEEEEeCCceee----ee--cCCCCCCeEEEEEccCCCE
Q 000085 2179 KLQHTLSSFTLNGVLVA----RA--KLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2179 ssdGsI~I~dlnG~~L~----s~--~~~Hs~~ItsLafSPDGk~ 2216 (2342)
..+|.|..+.-+ .++ +. ......+|+.+++..+++.
T Consensus 144 f~nG~V~~~~GD--i~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 144 FTNGLVICYKGD--ILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred ecCcEEEEEcCc--chhccccceeeeccCCCCceeeEEecCCce
Confidence 999998776532 111 11 1124678999999988877
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.64 E-value=1 Score=60.29 Aligned_cols=149 Identities=14% Similarity=0.065 Sum_probs=83.9
Q ss_pred CeEEEEEecCCCEEEEEeCCC----cEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC-----c
Q 000085 2122 EILCCCVSSDLGVVVSCSDSS----DLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-----V 2192 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DG----tIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG-----~ 2192 (2342)
....++++++|+++++.+.+. ++..-+..+...+..+.... .-.+.++|+.... .++.+.+++... .
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~ 311 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGS 311 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--HHHhhhCCCEEEE--CCCEEEEEECCccccCCc
Confidence 344566667777777766321 22222222222222111110 0122345654443 245566666543 1
Q ss_pred eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2193 LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2193 ~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
.+. ...+-......+.++|||+++++++. . +++|.|.|+
T Consensus 312 ~v~-~yIPVGKsPHGV~vSPDGkylyVank--l--------------------------------------S~tVSVIDv 350 (635)
T PRK02888 312 ALT-RYVPVPKNPHGVNTSPDGKYFIANGK--L--------------------------------------SPTVTVIDV 350 (635)
T ss_pred ceE-EEEECCCCccceEECCCCCEEEEeCC--C--------------------------------------CCcEEEEEC
Confidence 111 12224567788999999999997741 1 456777777
Q ss_pred CCCe------------EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2273 HTLK------------VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2273 ~Tgk------------~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.+.+ .+..... +..-...+|.++|....|---|..|..|++..
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 6644 2444442 34456778999998777888999999999543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=4.4 Score=52.29 Aligned_cols=237 Identities=14% Similarity=0.142 Sum_probs=148.3
Q ss_pred EEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccccccC
Q 000085 2002 VSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2002 VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
+.+.+++. ..++-.+...+.+.+............-...-.++++++++.. .++...+..|.+.|..+....+..
T Consensus 36 v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~--- 112 (381)
T COG3391 36 VAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI--- 112 (381)
T ss_pred eEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe---
Confidence 66777775 3333333334555544422111111111133456788888874 445555688888885553221111
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCeEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD---SSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~---DGtIrIWDLrTGklIr 2156 (2342)
..|. ....++++++++.++.+.. ++++.+.|..++..+.
T Consensus 113 ------------------------------------~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 113 ------------------------------------PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ------------------------------------eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 1111 4467889999877765554 7899999999999888
Q ss_pred EEecC-CcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeee-e---cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2157 RLVGV-DAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVAR-A---KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2157 sL~gh-~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s-~---~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
+.... ....++++|+|. +++.+..++.+.+++.++..+.. . ...-......+.++++|.++...- ++.
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~-~~~----- 228 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAN-DGS----- 228 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEe-ccC-----
Confidence 85432 347899999998 56666678899999987655542 1 011234557789999999877653 111
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEE-EecCCCCCeEEEEEecCCCEEEEEeC-CC
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHV-LKLGEGQDITALALNKDNTNLLVSTA-DK 2308 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~t-L~lgHs~~ItsLafSPDG~~LaSGSs-DG 2308 (2342)
.++.+.+.|..++..... ...+.. ....+.++|+|..+.+... .+
T Consensus 229 --------------------------------~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 229 --------------------------------GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred --------------------------------CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCC
Confidence 046788888888877665 232222 4567899999999888844 47
Q ss_pred cEEEEeCCCC
Q 000085 2309 QLIVFTDPAL 2318 (2342)
Q Consensus 2309 sIrVWDi~sL 2318 (2342)
.+.+-|....
T Consensus 276 ~V~vid~~~~ 285 (381)
T COG3391 276 TVSVIDGATD 285 (381)
T ss_pred eEEEEeCCCC
Confidence 8888885543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.5 Score=53.28 Aligned_cols=228 Identities=17% Similarity=0.203 Sum_probs=122.1
Q ss_pred EEEcCCCC-EEEEEEcCCc-EEEEecCCccccee--------cccCCCCeEEEEecCCCCEEEEEeCC-----CceEEEe
Q 000085 2002 VSITHDKE-IITGGHVDGS-IKLLTSDGAKTLET--------ASGHCAPVTCLALSSDSNFLVTGSQD-----TTILLWR 2066 (2342)
Q Consensus 2002 VafSpDGk-lLASGS~DGs-IrVWDl~tgkll~t--------L~GHt~~VtcLAfSPDG~~LaSGS~D-----GTVrVWD 2066 (2342)
++++|.-. -++.+-.-|+ ..++|.++++...+ +.||. .|||||.+|+..-.| |.|-|||
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 45555543 3444444444 56788887766544 34553 589999999876443 6788888
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-------
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS------- 2139 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS------- 2139 (2342)
.+.+... +..+.+|.-....+.+.+||+.++.+.
T Consensus 147 ~r~~fqr---------------------------------------vgE~~t~GiGpHev~lm~DGrtlvvanGGIethp 187 (366)
T COG3490 147 AREGFQR---------------------------------------VGEFSTHGIGPHEVTLMADGRTLVVANGGIETHP 187 (366)
T ss_pred cccccce---------------------------------------ecccccCCcCcceeEEecCCcEEEEeCCceeccc
Confidence 8753211 112223333333444445554444332
Q ss_pred -----------CCCcEEEEECCCCeEEEEEec------CCcEEEEEecCCcEEEEEeCCCe------EEEEEeCCceeee
Q 000085 2140 -----------DSSDLLLHSIRRGRLIRRLVG------VDAHAVSLSSEGVIMTWNKLQHT------LSSFTLNGVLVAR 2196 (2342)
Q Consensus 2140 -----------~DGtIrIWDLrTGklIrsL~g------h~vssLSfSpDG~IlVwdssdGs------I~I~dlnG~~L~s 2196 (2342)
..-.+.+.|..+|.++..... ..+..+...+||++.+-....|. +.-....|+.+.-
T Consensus 188 dfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~ 267 (366)
T COG3490 188 DFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEF 267 (366)
T ss_pred ccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcc
Confidence 122344455566666544332 23678888999987654322221 1111112333222
Q ss_pred ecCC------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2197 AKLP------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2197 ~~~~------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
...+ ....|-+++.+.+..+++..+- .-+...+|
T Consensus 268 ~~~pee~~~~~anYigsiA~n~~~glV~lTSP----------------------------------------~GN~~vi~ 307 (366)
T COG3490 268 LDLPEEQTAAFANYIGSIAANRRDGLVALTSP----------------------------------------RGNRAVIW 307 (366)
T ss_pred cCCCHHHHHHHHhhhhheeecccCCeEEEecC----------------------------------------CCCeEEEE
Confidence 2111 2345666666655555443321 13467899
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
|..+|.++...... .+..++- ...-+++.+.+|.+++++-...+
T Consensus 308 da~tG~vv~~a~l~---daaGva~--~~~gf~vssg~G~~~~~s~~~~s 351 (366)
T COG3490 308 DAATGAVVSEAALP---DAAGVAA--AKGGFAVSSGQGRIIFYSRAARS 351 (366)
T ss_pred EcCCCcEEeccccc---cccccee--ccCceEEecCCceEEeccccccC
Confidence 99999987654421 2223333 33448888889999988755443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.4 Score=57.85 Aligned_cols=214 Identities=12% Similarity=0.060 Sum_probs=109.9
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
.+.++|+|++++.+ .||...|+.....+... .+.-...+|.+.+ .+++-...++|.|+.--.......
T Consensus 37 ~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~----- 104 (443)
T PF04053_consen 37 SLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS----- 104 (443)
T ss_dssp EEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-------
T ss_pred eEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE-----
Confidence 48899999988874 58888888843322221 2334567888854 466666688898863222111000
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g 2160 (2342)
+.. ...+..+-. |.++...+.+ .|.+||+.+++.++++..
T Consensus 105 -----------------------------------i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 105 -----------------------------------IKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV 144 (443)
T ss_dssp ---------------------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS
T ss_pred -----------------------------------EcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec
Confidence 000 011222221 6666666554 899999999999999997
Q ss_pred CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCc------------eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCC
Q 000085 2161 VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV------------LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNN 2228 (2342)
Q Consensus 2161 h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~------------~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~ 2228 (2342)
..+..+.|+++|..++.-+.+ .+.+++.+-. .+.... .....|.+.+|..| -++.+..
T Consensus 145 ~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d-~fiYtT~------- 214 (443)
T PF04053_consen 145 SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED-CFIYTTS------- 214 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT-EEEEE-T-------
T ss_pred CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE-EecceeEEEEEEcC-EEEEEcC-------
Confidence 778999999999988877544 5566655433 111110 01467888888766 3333221
Q ss_pred CCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2229 GSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2229 ~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
+.|+. +-.|+ ..++. .-..++.=+.+.+....++....|+
T Consensus 215 ------------------------------------~~lkY--l~~Ge-~~~i~-~ld~~~yllgy~~~~~~ly~~Dr~~ 254 (443)
T PF04053_consen 215 ------------------------------------NHLKY--LVNGE-TGIIA-HLDKPLYLLGYLPKENRLYLIDRDG 254 (443)
T ss_dssp ------------------------------------TEEEE--EETTE-EEEEE-E-SS--EEEEEETTTTEEEEE-TT-
T ss_pred ------------------------------------CeEEE--EEcCC-cceEE-EcCCceEEEEEEccCCEEEEEECCC
Confidence 12332 11222 12222 1234566677778777888999999
Q ss_pred cEEEEeCC
Q 000085 2309 QLIVFTDP 2316 (2342)
Q Consensus 2309 sIrVWDi~ 2316 (2342)
.|..+.++
T Consensus 255 ~v~~~~ld 262 (443)
T PF04053_consen 255 NVISYELD 262 (443)
T ss_dssp -EEEEE--
T ss_pred CEEEEEEC
Confidence 99999854
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.043 Score=43.21 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=33.3
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
+++..+. .|...|+++.|++++..+++++.||.+++|+
T Consensus 3 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556666 7888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.24 E-value=4.4 Score=52.85 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=45.5
Q ss_pred EEEcCCCCEEEEEEcC----------C-cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2002 VSITHDKEIITGGHVD----------G-SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2002 VafSpDGklLASGS~D----------G-sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
++.+|.|-.||....+ . .|+||+.. |+.+.++.--.+.|.++.|+.+ ..|+.-..||+++++|+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 4555555555544332 2 59999975 4556555433389999999875 5677778999999999875
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.23 E-value=3.7 Score=54.64 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=41.6
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCC-----eE-EEEecCCCCEEEEEe---------CCCceEEEeccCCccc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAP-----VT-CLALSSDSNFLVTGS---------QDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~-----Vt-cLAfSPDG~~LaSGS---------~DGTVrVWDl~tg~~i 2073 (2342)
..++.++.++.|+-+|.++|+.+-........ |. ...+. +..++.++ .++.+...|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56777788999999999999887655432210 11 11222 24455554 3677888888887655
Q ss_pred ccc
Q 000085 2074 RTG 2076 (2342)
Q Consensus 2074 ~t~ 2076 (2342)
...
T Consensus 189 W~~ 191 (488)
T cd00216 189 WRF 191 (488)
T ss_pred eEe
Confidence 544
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.20 E-value=3.2 Score=55.24 Aligned_cols=281 Identities=12% Similarity=0.026 Sum_probs=138.9
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCC------CeE--EEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCA------PVT--CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~------~Vt--cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
+..+..++.++.++-.|..+|+.+-....... .+. .++.. ++..++.++.|+.|.-+|..+++........
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 33456677789999999999987765543221 111 11111 2268888889999999999988766544211
Q ss_pred CCC----CCc-ccccc-----------------CCCCCceeecCCCccccccCCc---eEEec---------CCC-CCe-
Q 000085 2080 PSS----GMG-TPGNS-----------------IGSSTPANASADKSRRRRIEGP---IHVLR---------GHH-REI- 2123 (2342)
Q Consensus 2080 ~~~----~V~-svs~S-----------------pDG~~Las~s~D~s~~~~i~~~---l~~L~---------GHs-~~V- 2123 (2342)
... .+. ...+. .++...+....++...|..... ...+. ++. ..|
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 110 000 00000 0111122222223333432110 00000 011 111
Q ss_pred EEEEEecCCCEEEEEeCCC------------------cEEEEECCCCeEEEEEec--CCcE--------EEE-E-ecCCc
Q 000085 2124 LCCCVSSDLGVVVSCSDSS------------------DLLLHSIRRGRLIRRLVG--VDAH--------AVS-L-SSEGV 2173 (2342)
Q Consensus 2124 t~VafSPDg~lLaSGS~DG------------------tIrIWDLrTGklIrsL~g--h~vs--------sLS-f-SpDG~ 2173 (2342)
...++.+.+..++.++.|+ .|.-.|..+|+.+-.+.. +... .+. . .-+|.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1344555677788887665 799999999998877642 1110 111 1 02332
Q ss_pred ---EEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccc
Q 000085 2174 ---IMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDL 2249 (2342)
Q Consensus 2174 ---IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFsp 2249 (2342)
+++....+|.+..++.. |+.+=..... ...++.+| ..++.++..... .+...
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~---------~~~~~--------- 355 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPL---------GLPPQ--------- 355 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccc---------cCccc---------
Confidence 44555566777666664 4332221110 11233344 334333211110 00000
Q ss_pred ccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC-------CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2250 ASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG-------QDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2250 d~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs-------~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
. ........+|.+.-.|+.+|+.+.....+.. .+...-.....+..|++++.||.|+.+|..+.
T Consensus 356 ~-----~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 356 K-----KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred c-----cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCC
Confidence 0 0001112368899999999998887764310 11111111225567889999999999996655
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.39 Score=64.06 Aligned_cols=183 Identities=7% Similarity=-0.023 Sum_probs=103.7
Q ss_pred EEEcCCCCEE-EEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC----CceEEEeccCCcccccc
Q 000085 2002 VSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD----TTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2002 VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D----GTVrVWDl~tg~~i~t~ 2076 (2342)
+-++|||+.+ ...-..+.+.+.|.++.+...++.--. .-..+++++||+++++.+.+ .++..-+.........+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 4467788754 344466788888988877665544322 33567899999999887632 22332222221110000
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCC------ceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEC
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG------PIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSI 2149 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~------~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDL 2149 (2342)
. .. ....+.++|+..... .+.+...+... .+..+-.-......++++|||++++.++ .+.+|.|.|+
T Consensus 277 n---i~--~iea~vkdGK~~~V~-gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 277 N---IA--RIEEAVKAGKFKTIG-GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred c---hH--HHHHhhhCCCEEEEC-CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 0 00 001223355443321 12222222222 1222222345678899999999886555 5899999999
Q ss_pred CCCeE------------EEEEe-cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2150 RRGRL------------IRRLV-GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2150 rTGkl------------IrsL~-gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
.+.+. +.... +-.....+|+.+|..+..-..+.++..|++..
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 87552 22222 23356778899988666666678888898753
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=94.84 E-value=3.1 Score=50.69 Aligned_cols=192 Identities=11% Similarity=0.119 Sum_probs=108.1
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccC-CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGH-CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GH-t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
++.++|.|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++--+++++.+.++.........
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 45699999866 6666767788887886 46777665432 345788899888888887767899999888552110000
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---Ce
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR---GR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT---Gk 2153 (2342)
. ...... +.....+...+-.++|++.++.++.+-......++.+.. +.
T Consensus 103 --------------------~-----~~~~~~----l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 103 --------------------A-----DVQKIS----LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp --------------------E-----EEEEEE-------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred --------------------h-----hceEEe----cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc
Confidence 0 000000 000123456688999999888887777776767776653 22
Q ss_pred EEEEEec----------CCcEEEEEecC-CcEEEEEeCCCeEEEEEeCCceeeeecCCC--------CCCeEEEEEccCC
Q 000085 2154 LIRRLVG----------VDAHAVSLSSE-GVIMTWNKLQHTLSSFTLNGVLVARAKLPL--------SGSIGCMEISLDG 2214 (2342)
Q Consensus 2154 lIrsL~g----------h~vssLSfSpD-G~IlVwdssdGsI~I~dlnG~~L~s~~~~H--------s~~ItsLafSPDG 2214 (2342)
.+..... .....+++.|. |++++.+..+..+..++..|+.+....+.. -.+.-.|+|.++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred ceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 2222111 12466777764 677888888888888888887766544431 1368899999999
Q ss_pred CEEEEE
Q 000085 2215 HSALIG 2220 (2342)
Q Consensus 2215 k~LaSG 2220 (2342)
+..+++
T Consensus 234 ~LYIvs 239 (248)
T PF06977_consen 234 NLYIVS 239 (248)
T ss_dssp -EEEEE
T ss_pred CEEEEc
Confidence 877755
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.45 Score=57.48 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=86.6
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc-------cCCCCCCccccccCCCCCce--eecCCCcc
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT-------IEPSSGMGTPGNSIGSSTPA--NASADKSR 2105 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~-------~~~~~~V~svs~SpDG~~La--s~s~D~s~ 2105 (2342)
..|.--|.++.|..|...++++ .|-.|.+|++.-......+. ......+++..|+|....+. +.+.+.+.
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3577778899999888888775 57789999886532211110 01112244555666544332 22222222
Q ss_pred ccccC--------Cc----------eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEEEEecCC----
Q 000085 2106 RRRIE--------GP----------IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIRRLVGVD---- 2162 (2342)
Q Consensus 2106 ~~~i~--------~~----------l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIrsL~gh~---- 2162 (2342)
..+.. .. ..-+.+-...|..+.|+++|+++++-+. -+|+|||++.. .++.++.-|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence 22211 00 1112223457889999999999987665 58999999854 5677775442
Q ss_pred -------------cEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2163 -------------AHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2163 -------------vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
-.-+.||-|..-++.+.......+|
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 1235666666666655544444443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.73 Score=60.06 Aligned_cols=175 Identities=16% Similarity=0.054 Sum_probs=103.9
Q ss_pred EEEcCCCCEEEEEE---cC-CcEEEEecCCccccee--cccCCCCeEEEEecCCCCEEE-EEeCCCceEEE--eccCCcc
Q 000085 2002 VSITHDKEIITGGH---VD-GSIKLLTSDGAKTLET--ASGHCAPVTCLALSSDSNFLV-TGSQDTTILLW--RIHRAFT 2072 (2342)
Q Consensus 2002 VafSpDGklLASGS---~D-GsIrVWDl~tgkll~t--L~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVW--Dl~tg~~ 2072 (2342)
-+|+|+++.++.-. .. ..+.++++.+++.... +.+|. ..-+|+|||++|+ +...||...|| |+.+...
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 56888888544332 22 4589999998865544 34444 3468999998766 45667766555 5555432
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCc--ccc--cc-CCceEEecCCCCCeEEEEEecCCCEEEEEeCC-Cc--E
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKS--RRR--RI-EGPIHVLRGHHREILCCCVSSDLGVVVSCSDS-SD--L 2144 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s--~~~--~i-~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D-Gt--I 2144 (2342)
.. .....+.-....++|||+.++..+..+- .++ +. ......+.-+.+.-.+-.|+|||++++..+.. |. |
T Consensus 275 -~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 275 -PR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred -ee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceee
Confidence 22 2222333337789999999866654321 111 11 11222333232333377799999999877743 44 7
Q ss_pred EEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCC
Q 000085 2145 LLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQ 2181 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssd 2181 (2342)
.+.|+.++..++.+.... ...-++.++|..+++....
T Consensus 353 ~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 353 DKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 777777766555554322 3455678888877776443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.11 Score=67.88 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=71.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeE-EEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT-CLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt-cLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
..+.|+|.-.+||.+..+|.|.+..+. -+.+.++.-|...|+ +++|.|||+.|+.|=.||+|++-|+.++..++....
T Consensus 24 ~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~ 102 (665)
T KOG4640|consen 24 KRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLF 102 (665)
T ss_pred EEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecccc
Confidence 348899999999999999999999887 566777777777777 999999999999999999999999999876655322
Q ss_pred CCCCCCcccccc
Q 000085 2079 EPSSGMGTPGNS 2090 (2342)
Q Consensus 2079 ~~~~~V~svs~S 2090 (2342)
.....+....|+
T Consensus 103 s~e~~is~~~w~ 114 (665)
T KOG4640|consen 103 SVETDISKGIWD 114 (665)
T ss_pred ccccchheeecc
Confidence 233334444443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=6.5 Score=50.76 Aligned_cols=179 Identities=12% Similarity=0.161 Sum_probs=116.0
Q ss_pred EEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccCCcccccc
Q 000085 2001 VVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2001 ~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~tg~~i~t~ 2076 (2342)
.+++++++. ..+....++.|.+.|..+.+......--. .-..++++++++.++.+.. ++++.+-|..+.....+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~- 155 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT- 155 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-
Confidence 477888888 55666667999999987776665544222 4568899999988776655 56676666665422111
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLI 2155 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklI 2155 (2342)
...|- .+ ..++++|+|..++.+. .+++|.+.|..+....
T Consensus 156 --------------------------------------~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 156 --------------------------------------IPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred --------------------------------------EecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 11111 22 7889999999665554 7899999997766665
Q ss_pred E------EEecCCcEEEEEecCCcEE-EEEeCC--CeEEEEEeCCceeeeecCCCCC-CeEEEEEccCCCEEEEEe
Q 000085 2156 R------RLVGVDAHAVSLSSEGVIM-TWNKLQ--HTLSSFTLNGVLVARAKLPLSG-SIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2156 r------sL~gh~vssLSfSpDG~Il-Vwdssd--GsI~I~dlnG~~L~s~~~~Hs~-~ItsLafSPDGk~LaSGS 2221 (2342)
+ .-.+.....+.++++|..+ +....+ +.+...+.....+......-.. ....+.++|+|.++.+..
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN 271 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe
Confidence 4 1112235678999999844 444433 4777777665444433222112 566789999999988763
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.35 E-value=5 Score=52.25 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=63.9
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEE----ecCC-----------------c
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSL----SSEG-----------------V 2173 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSf----SpDG-----------------~ 2173 (2342)
.+......+.+++.+|++++.++...=|.|.++|+.++..++.+++...-.+.| .... -
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 444555678999999999999888888999999999999999888754322222 1111 2
Q ss_pred EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCE
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
++++..+.|.+.+|.+. |...|.++...+++++
T Consensus 382 LvIyaprRg~lEvW~~~----------~g~Rv~a~~v~k~~rL 414 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMR----------QGPRVAAFNVGKGCRL 414 (415)
T ss_pred EEEEeccCCeEEEEecC----------CCCEEEEEEeCCCcEE
Confidence 45677788888888874 2345555555555443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.19 E-value=11 Score=52.32 Aligned_cols=311 Identities=14% Similarity=0.088 Sum_probs=157.0
Q ss_pred eEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEe
Q 000085 1968 FLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLAL 2046 (2342)
Q Consensus 1968 tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAf 2046 (2342)
.+|+++... ....|..|...+. .+.+.+...++.++.++.+...++..+....+.+ .-...|.|+.+
T Consensus 471 ~iRl~ss~~--~~~~W~~p~~~ti----------~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDi 538 (1096)
T KOG1897|consen 471 SIRLVSSAG--LRSEWRPPGKITI----------GVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDI 538 (1096)
T ss_pred cEEEEcchh--hhhcccCCCceEE----------EEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEec
Confidence 577777542 4557766554332 2233333344444446666666666554222211 12467999999
Q ss_pred cCCC------CEEEEEeCCCceEEEeccCCcccccc----ccCCCCCCccccccCCCCCceeecCCCcccc---ccC-Cc
Q 000085 2047 SSDS------NFLVTGSQDTTILLWRIHRAFTSRTG----TIEPSSGMGTPGNSIGSSTPANASADKSRRR---RIE-GP 2112 (2342)
Q Consensus 2047 SPDG------~~LaSGS~DGTVrVWDl~tg~~i~t~----~~~~~~~V~svs~SpDG~~Las~s~D~s~~~---~i~-~~ 2112 (2342)
+|-| ++++.|.++..+.+--.......... ...-+..+....+--|+.++.++..++.... +.. ..
T Consensus 539 sp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ 618 (1096)
T KOG1897|consen 539 SPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ 618 (1096)
T ss_pred ccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce
Confidence 9742 37888998887766544332211111 1122333444444445667777766665331 111 11
Q ss_pred ---eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcE-EEEEecCC-cEEEEEeCCCeEEEE
Q 000085 2113 ---IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAH-AVSLSSEG-VIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2113 ---l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vs-sLSfSpDG-~IlVwdssdGsI~I~ 2187 (2342)
.+...--..++.--.|+..++.-+-+..|.-..+|.-+..-+...+...++. .+.++.++ .-.+.....+.+.+.
T Consensus 619 lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~ 698 (1096)
T KOG1897|consen 619 LSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIG 698 (1096)
T ss_pred EccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEE
Confidence 1111112345555566666555555666666666664332222223222222 22233222 222222344556666
Q ss_pred EeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2188 TLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2188 dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
.++. +.+.....+-......+++.+....+.+.+....... . + +.. ...-..
T Consensus 699 tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~----------~---~---~~e-----------e~~~s~ 751 (1096)
T KOG1897|consen 699 TIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSA----------E---Y---YGE-----------EYEVSF 751 (1096)
T ss_pred EecchhhcceeeecCCCChhheEecccceEEEEEecccccch----------h---h---cCC-----------cceEEE
Confidence 6542 1111111334566778888875555555542222000 0 0 000 011346
Q ss_pred EEEEECCCCeEEEEEecCCCCC---eEEEEEecC-CCEEEEEeC----------CCcEEEEeCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQD---ITALALNKD-NTNLLVSTA----------DKQLIVFTDPA 2317 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~---ItsLafSPD-G~~LaSGSs----------DGsIrVWDi~s 2317 (2342)
++++|-+|.+.++..+...... |.++.|..| +.++++|+. .|.|.||....
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 8899999888777655433333 455558888 788888863 58888888665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.4 Score=57.77 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=80.3
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEE-eCCcee
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFT-LNGVLV 2194 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~d-lnG~~L 2194 (2342)
+.........+.++|+|+.++. +.||.-.|+.....+.... .....++|.+.|++.+.+. ++.|.++. ++....
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~---G~g~~~vw~~~n~yAv~~~-~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF---GSGLSFVWSSRNRYAVLES-SSTIKIYKNFKNEVV 102 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE---EE-SEEEE-TSSEEEEE-T-TS-EEEEETTEE-TT
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc---CceeEEEEecCccEEEEEC-CCeEEEEEcCccccc
Confidence 3334455788999999998887 5567777777544433332 2234677888888777765 66777753 222111
Q ss_pred eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC
Q 000085 2195 ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT 2274 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T 2274 (2342)
.... ....+..+-. |..|...+ ++.|.+||+.+
T Consensus 103 k~i~--~~~~~~~If~---G~LL~~~~------------------------------------------~~~i~~yDw~~ 135 (443)
T PF04053_consen 103 KSIK--LPFSVEKIFG---GNLLGVKS------------------------------------------SDFICFYDWET 135 (443)
T ss_dssp -------SS-EEEEE----SSSEEEEE------------------------------------------TTEEEEE-TTT
T ss_pred eEEc--CCcccceEEc---CcEEEEEC------------------------------------------CCCEEEEEhhH
Confidence 1111 1122333322 66665443 45799999999
Q ss_pred CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2275 LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2275 gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
++.+..+. . .+|..|.|+++|.+++..+.| .+.|++
T Consensus 136 ~~~i~~i~--v-~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 136 GKLIRRID--V-SAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred cceeeEEe--c-CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 99999988 2 248999999999999888755 677776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.68 E-value=23 Score=46.43 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=40.0
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcE
Q 000085 2121 REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVI 2174 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~I 2174 (2342)
+++..+++||++++++.-..+|.+.+.+..-.+.+..+... ....+.|.-+..+
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 57999999999999999999999999887655565555433 2455666655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.51 E-value=7.6 Score=48.63 Aligned_cols=102 Identities=11% Similarity=0.091 Sum_probs=58.9
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-EEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeC--Ccee
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR-LIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN--GVLV 2194 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk-lIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~dln--G~~L 2194 (2342)
..++|++++-- ++. ++.+. ++.|.+|++...+ ....-.. .....++....+.+++.+.....+.++..+ +..+
T Consensus 87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l 163 (321)
T PF03178_consen 87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKL 163 (321)
T ss_dssp ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-E
T ss_pred ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEE
Confidence 46789988766 344 44333 4799999998887 5443322 234555555556666666655666666443 4322
Q ss_pred eeec-CCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2195 ARAK-LPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2195 ~s~~-~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
.... -.....++++.+-+|++.++++..+
T Consensus 164 ~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 164 ILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp EEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred EEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 2211 1245678888888777777766543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.41 E-value=4.5 Score=50.65 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=101.7
Q ss_pred cceeEEEEEcCC----CCEEEEEEc----------CCcEEEEecCCc----ccceec--ccCCCCeEEEEecCCCCEEEE
Q 000085 1996 IRSSAVVSITHD----KEIITGGHV----------DGSIKLLTSDGA----KTLETA--SGHCAPVTCLALSSDSNFLVT 2055 (2342)
Q Consensus 1996 I~Svt~VafSpD----GklLASGS~----------DGsIrVWDl~tg----kll~tL--~GHt~~VtcLAfSPDG~~LaS 2055 (2342)
+.++..+.+..+ ..+|+.|+. .|.|.++++... ..+..+ ....++|++++-- ++. |+.
T Consensus 26 ~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~ 103 (321)
T PF03178_consen 26 VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVV 103 (321)
T ss_dssp EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEE
T ss_pred EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEE
Confidence 344455556554 357777763 288999999874 122222 2357889999876 444 444
Q ss_pred EeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE
Q 000085 2056 GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV 2135 (2342)
Q Consensus 2056 GS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL 2135 (2342)
+. .+.|.+|++....... ....+. ....++++... ++++
T Consensus 104 ~~-g~~l~v~~l~~~~~l~-------------------------------------~~~~~~-~~~~i~sl~~~--~~~I 142 (321)
T PF03178_consen 104 AV-GNKLYVYDLDNSKTLL-------------------------------------KKAFYD-SPFYITSLSVF--KNYI 142 (321)
T ss_dssp EE-TTEEEEEEEETTSSEE-------------------------------------EEEEE--BSSSEEEEEEE--TTEE
T ss_pred ee-cCEEEEEEccCcccch-------------------------------------hhheec-ceEEEEEEecc--ccEE
Confidence 43 4899999998743000 011111 12255555554 6689
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEEec----CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC--------c-ee-eeecCC
Q 000085 2136 VSCSDSSDLLLHSIRR-GRLIRRLVG----VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG--------V-LV-ARAKLP 2200 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrT-GklIrsL~g----h~vssLSfSpDG~IlVwdssdGsI~I~dlnG--------~-~L-~s~~~~ 2200 (2342)
+.|.....+.++..+. +..+..+.. ..+..+.+-.|+..++.+...|.+.++..+. . .+ ....+.
T Consensus 143 ~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~ 222 (321)
T PF03178_consen 143 LVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH 222 (321)
T ss_dssp EEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE
T ss_pred EEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE
Confidence 9999888888775443 332332221 2256666665656777777889998888752 1 12 222222
Q ss_pred CCCCeEEE---EEcc--CCC------EEEEEeCCCC
Q 000085 2201 LSGSIGCM---EISL--DGH------SALIGVNSSS 2225 (2342)
Q Consensus 2201 Hs~~ItsL---afSP--DGk------~LaSGS~DGs 2225 (2342)
....|+++ .+.| .+. .++.++.+|+
T Consensus 223 lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~ 258 (321)
T PF03178_consen 223 LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGS 258 (321)
T ss_dssp -SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-
T ss_pred CCCccceEEEEEeeecCCCCcccccceEEEEecCCE
Confidence 45667777 4444 222 3666666666
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.043 Score=71.12 Aligned_cols=179 Identities=16% Similarity=0.203 Sum_probs=104.9
Q ss_pred EEEEEcCCC--CEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecC-CCCEEEEEe----CCCceEEEeccCC
Q 000085 2000 AVVSITHDK--EIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSS-DSNFLVTGS----QDTTILLWRIHRA 2070 (2342)
Q Consensus 2000 t~VafSpDG--klLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSP-DG~~LaSGS----~DGTVrVWDl~tg 2070 (2342)
.|++..-+. .+++.|..+|.|.+-.+.... ......+|....+|++|++ |.+.||.|- .|..+.|||+.+.
T Consensus 60 kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ 139 (783)
T KOG1008|consen 60 KCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSL 139 (783)
T ss_pred eeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccc
Confidence 345544433 489999999999998875432 2345677889999999998 456777662 4678999999885
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
-.... ....|+ + +......++||-.+.+++.+|.....+.++|++
T Consensus 140 ltvPk---------e~~~fs--------~------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 140 LTVPK---------ESPLFS--------S------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred cCCCc---------cccccc--------c------------------ccccCccccccccCcchhhcccccchhhhhhhh
Confidence 22100 000000 0 122334478888889999999999999999998
Q ss_pred CC-eEEEEEecCCcEEEEEec-CCcEEEEEeCCCeEEEEEeC---Cceeeeec---CCCCCCeEEEEEccCC
Q 000085 2151 RG-RLIRRLVGVDAHAVSLSS-EGVIMTWNKLQHTLSSFTLN---GVLVARAK---LPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2151 TG-klIrsL~gh~vssLSfSp-DG~IlVwdssdGsI~I~dln---G~~L~s~~---~~Hs~~ItsLafSPDG 2214 (2342)
.. .....+...-+..++++| .+.+ +++..+|.+.+|+.. ..++.... .+....+..++|+|..
T Consensus 185 qs~~~~~svnTk~vqG~tVdp~~~nY-~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 185 QSLDSVSSVNTKYVQGITVDPFSPNY-FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhhhhhhhhhcccceecCCCCCc-eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 32 112222211233445555 3332 233335666666621 11111111 0122358899999864
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.61 E-value=7.6 Score=48.81 Aligned_cols=213 Identities=12% Similarity=0.016 Sum_probs=121.1
Q ss_pred EcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc----cc
Q 000085 2004 ITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG----TI 2078 (2342)
Q Consensus 2004 fSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~----~~ 2078 (2342)
|.++.. ++.+.-..+.|.-|+..+++.. .+. +.+.+.++..-.++..|+++.. -+.+++..++...... ..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 445555 4555556778888888765432 222 3334556555555566666543 3555666544331111 11
Q ss_pred CCCCCCccccccCCCCCceeecC-----CC-------ccccc-cCCceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASA-----DK-------SRRRR-IEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDL 2144 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~-----D~-------s~~~~-i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtI 2144 (2342)
............|+|...+.... .. ..+.+ ....+..+.+|-..-+.++||||++.++.+.. .+.|
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 12234445566777776655544 10 11112 12234444445555678999999987776654 4778
Q ss_pred EEEECCC--CeE----EEEEec---CCcEEEEEecCCcEEEEEeCCC-eEEEEEeCCceeeeecCCCCCCeEEEEEc-cC
Q 000085 2145 LLHSIRR--GRL----IRRLVG---VDAHAVSLSSEGVIMTWNKLQH-TLSSFTLNGVLVARAKLPLSGSIGCMEIS-LD 2213 (2342)
Q Consensus 2145 rIWDLrT--Gkl----IrsL~g---h~vssLSfSpDG~IlVwdssdG-sI~I~dlnG~~L~s~~~~Hs~~ItsLafS-PD 2213 (2342)
.-|++.. +.. ...... ...--++...+|.+.++....| .|..|+.+|+.+.....+. ..+++++|- ++
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~-~~~t~~~FgG~~ 266 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPV-KRPTNPAFGGPD 266 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCC-CCCccceEeCCC
Confidence 8887652 211 111111 1134577788888776444443 8999999999988887765 667777775 45
Q ss_pred CCEEEEEe
Q 000085 2214 GHSALIGV 2221 (2342)
Q Consensus 2214 Gk~LaSGS 2221 (2342)
.+.|++.+
T Consensus 267 ~~~L~iTs 274 (307)
T COG3386 267 LNTLYITS 274 (307)
T ss_pred cCEEEEEe
Confidence 56666554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=92.44 E-value=12 Score=48.61 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccc-------------------------------------------ceecc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKT-------------------------------------------LETAS 2035 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkl-------------------------------------------l~tL~ 2035 (2342)
++.+.|+++..-|++|...|.|.||.+...+. ...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 56688999988899999999999986432110 01123
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
...++|++++.| |=.+++.|..+|++.|.|++....+..... . . ...
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i--------------------------~-----~-~~~ 130 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENI--------------------------R-----E-SFL 130 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEG--------------------------G-----G---T
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccc--------------------------c-----c-ccc
Confidence 346899999998 666999999999999999977543322100 0 0 000
Q ss_pred ecCCCCCeEEEEEec-----CC---CEEEEEeCCCcEEEEECC
Q 000085 2116 LRGHHREILCCCVSS-----DL---GVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSP-----Dg---~lLaSGS~DGtIrIWDLr 2150 (2342)
-......|+++.|+. |+ -.++.|...|.+.+|.+-
T Consensus 131 ~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 131 SKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp -SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 011234566777752 22 367788888999999764
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.5 Score=60.53 Aligned_cols=131 Identities=15% Similarity=0.226 Sum_probs=85.1
Q ss_pred CCCcEEEEECCCCeEEEEEecCC-cEEEEEecCC-------cEEEEEeCCCeEEEEEeC--Cceeee---ecCCCCCCeE
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEG-------VIMTWNKLQHTLSSFTLN--GVLVAR---AKLPLSGSIG 2206 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG-------~IlVwdssdGsI~I~dln--G~~L~s---~~~~Hs~~It 2206 (2342)
....|+-.|+.+|+.+..+..+. +....+.|+. .-.+.+..+..+..|+.. |..+.. .........+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 45778899999999999888765 3355565543 233555666667777654 322211 1112455678
Q ss_pred EEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC
Q 000085 2207 CMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG 2286 (2342)
Q Consensus 2207 sLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs 2286 (2342)
|++-+.+|.. |+|+ .+|.|++||-- |+.-.+...+-+
T Consensus 582 ~~aTt~~G~i-avgs-----------------------------------------~~G~IRLyd~~-g~~AKT~lp~lG 618 (794)
T PF08553_consen 582 CFATTEDGYI-AVGS-----------------------------------------NKGDIRLYDRL-GKRAKTALPGLG 618 (794)
T ss_pred EEEecCCceE-EEEe-----------------------------------------CCCcEEeeccc-chhhhhcCCCCC
Confidence 8887777754 4454 26779999953 333334333778
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2287 QDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2287 ~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+|.+|+.+.||++|++.+ +..|.+++
T Consensus 619 ~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 619 DPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred CCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 9999999999999887655 55677766
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.96 E-value=4.1 Score=51.86 Aligned_cols=218 Identities=13% Similarity=0.021 Sum_probs=104.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-eccc-------C---------CCCeEEEEecCCCCEEEEEeCC-Cc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-TASG-------H---------CAPVTCLALSSDSNFLVTGSQD-TT 2061 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~-tL~G-------H---------t~~VtcLAfSPDG~~LaSGS~D-GT 2061 (2342)
....|||+|+.++... ++.|.+++..++...+ +..| - -+.-..+-|||||++|+....| ..
T Consensus 46 ~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~ 124 (353)
T PF00930_consen 46 QDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDERE 124 (353)
T ss_dssp SEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TT
T ss_pred ccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcC
Confidence 3488999999999885 7899999987764432 1122 0 1123457899999999876543 33
Q ss_pred eEEEec-----------------------------------cCCcccccc-c---cCCCCCCccccccCCCCCceeecCC
Q 000085 2062 ILLWRI-----------------------------------HRAFTSRTG-T---IEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2062 VrVWDl-----------------------------------~tg~~i~t~-~---~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
|..+.+ .++...... . ......+..+.|.+++..++....+
T Consensus 125 v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 125 VPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp S-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 433332 211110000 0 0111122334444555422222111
Q ss_pred Ccc------cccc--CCceEEec-CCCC---CeEEEEEe-cCCC-EEEEEeCCCc--EEEEECCCCeEEEEEecCC--c-
Q 000085 2103 KSR------RRRI--EGPIHVLR-GHHR---EILCCCVS-SDLG-VVVSCSDSSD--LLLHSIRRGRLIRRLVGVD--A- 2163 (2342)
Q Consensus 2103 ~s~------~~~i--~~~l~~L~-GHs~---~Vt~VafS-PDg~-lLaSGS~DGt--IrIWDLrTGklIrsL~gh~--v- 2163 (2342)
... .++. +.....+. .... ......|. +++. ++.....||. |.+.+...+. .+.+.... +
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~ 283 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVT 283 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EE
T ss_pred cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeec
Confidence 110 0111 11111111 1111 22245554 5544 4445557775 4445555554 33443222 3
Q ss_pred EEEEEecCCcEEEEEeCC---CeEEEE--EeC-CceeeeecCCCCCCe-EEEEEccCCCEEEEEe
Q 000085 2164 HAVSLSSEGVIMTWNKLQ---HTLSSF--TLN-GVLVARAKLPLSGSI-GCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwdssd---GsI~I~--dln-G~~L~s~~~~Hs~~I-tsLafSPDGk~LaSGS 2221 (2342)
..+.+++++..+.+.... ..-++| +++ +..+.... ..... ..+.|||+|++++...
T Consensus 284 ~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT--~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 284 SILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT--CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS--TTSSTTEEEEE-TTSSEEEEEE
T ss_pred ccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc--CCCCCceEEEECCCCCEEEEEE
Confidence 467888888776665433 233444 445 44554433 22222 6999999999998654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.94 E-value=74 Score=44.94 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=40.9
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
..+|++|++.+.+.++.-. .|..++..+...-.|..+++|.--+++.+-..
T Consensus 847 n~~vrLye~t~~~eLr~e~-~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 847 NQSVRLYEWTTERELRIEC-NISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred CcEEEEEEccccceehhhh-cccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 3569999998886666555 67788999999999999999988887776553
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.53 Score=61.74 Aligned_cols=78 Identities=10% Similarity=0.238 Sum_probs=63.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
-.|.-+.|+|.-..+|++..+|.|.+..++-. .+.++.-
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-----------------------------------------Rlwtip~ 59 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-----------------------------------------RLWTIPI 59 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc-----------------------------------------eeEeccC
Confidence 35778899999999999999999988887632 1122333
Q ss_pred CCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2119 HHREIL-CCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2119 Hs~~Vt-~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
|...++ +++|.|||+.++.|-.||+|+++|+.+|..+..
T Consensus 60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 555566 999999999999999999999999999987766
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.45 E-value=21 Score=45.38 Aligned_cols=237 Identities=13% Similarity=0.074 Sum_probs=120.3
Q ss_pred EEEcCCCCEEEEEE----------cCCcEEEEecCCcccceec--cc-CCC----CeEEEEecCCCCEEEEE--eCCCce
Q 000085 2002 VSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETA--SG-HCA----PVTCLALSSDSNFLVTG--SQDTTI 2062 (2342)
Q Consensus 2002 VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL--~G-Ht~----~VtcLAfSPDG~~LaSG--S~DGTV 2062 (2342)
+.++|||+.+.+.+ .+-.|.+||..+-.....+ .. |.. .....+++.||++++.. +--..|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 66899999776532 4556999999887554422 21 111 22345788899887764 445678
Q ss_pred EEEeccCCccccccccCCCC------CCccccccCCCCCceeecCC-CccccccCCceEEecCCCCCeE-EEEEecCCCE
Q 000085 2063 LLWRIHRAFTSRTGTIEPSS------GMGTPGNSIGSSTPANASAD-KSRRRRIEGPIHVLRGHHREIL-CCCVSSDLGV 2134 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~------~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l~~L~GHs~~Vt-~VafSPDg~l 2134 (2342)
.|-|+...+...+.....+. .-.....+-||..+.+...+ +... .+....+....+++. .-++...+..
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe---EeeccccCCCCcccccccceECCCCe
Confidence 88888886655443111111 11122223344433332221 1111 001112222223222 3344555666
Q ss_pred EEEEeCCCcEEEEECCCCeE--EEEEec------------CCcEEEEEecCC-cEEEEE-------eCCC--eEEEEEeC
Q 000085 2135 VVSCSDSSDLLLHSIRRGRL--IRRLVG------------VDAHAVSLSSEG-VIMTWN-------KLQH--TLSSFTLN 2190 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGkl--IrsL~g------------h~vssLSfSpDG-~IlVwd-------ssdG--sI~I~dln 2190 (2342)
++--+.+|.|+--|+..... ...+.. .+-..+++++.. ++++.- -.++ .|.+|++.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 66688889998888865542 222321 112457777544 443321 1122 34455554
Q ss_pred -CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2191 -GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2191 -G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
++.+.+... ..++.+|.++.|.+=++.+-. . .++.+.|
T Consensus 278 t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~-~--------------------------------------~~~~l~v 316 (342)
T PF06433_consen 278 THKRVARIPL--EHPIDSIAVSQDDKPLLYALS-A--------------------------------------GDGTLDV 316 (342)
T ss_dssp TTEEEEEEEE--EEEESEEEEESSSS-EEEEEE-T--------------------------------------TTTEEEE
T ss_pred CCeEEEEEeC--CCccceEEEccCCCcEEEEEc-C--------------------------------------CCCeEEE
Confidence 444554433 346778999888774443310 0 2678999
Q ss_pred EECCCCeEEEEEe
Q 000085 2270 LDLHTLKVFHVLK 2282 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~ 2282 (2342)
||..+|+.+.++.
T Consensus 317 ~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 317 YDAATGKLVRSIE 329 (342)
T ss_dssp EETTT--EEEEE-
T ss_pred EeCcCCcEEeehh
Confidence 9999999999887
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=91.40 E-value=69 Score=43.47 Aligned_cols=54 Identities=15% Similarity=-0.021 Sum_probs=37.4
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
-|.|.-+|+.+++.....+.... ...+. +.-.+..++.++.||.++.+|..+.+
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p-~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe 493 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFP-LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGE 493 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCC-CCCcc-eEECCcEEEEECCCCeEEEEECCCCC
Confidence 57899999999999887763221 11122 22245567788889999999977663
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=15 Score=50.24 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=40.4
Q ss_pred CcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEe---CCceeee-----ecCCCCCCeEEEEEccC
Q 000085 2142 SDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTL---NGVLVAR-----AKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dl---nG~~L~s-----~~~~Hs~~ItsLafSPD 2213 (2342)
+.+.+.++..+.....+ ...+..+.||+||..+++-. ++.+++-.+ .+....- ........+.++.|..+
T Consensus 430 gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~ 507 (591)
T PRK13616 430 GQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTG 507 (591)
T ss_pred ceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecC
Confidence 34444455544443311 23478888999998777654 466655222 2222111 11112334688999999
Q ss_pred CCEEE
Q 000085 2214 GHSAL 2218 (2342)
Q Consensus 2214 Gk~La 2218 (2342)
+.+++
T Consensus 508 ~~L~V 512 (591)
T PRK13616 508 DSLVV 512 (591)
T ss_pred CEEEE
Confidence 88653
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.11 E-value=44 Score=40.74 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=57.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
|+.++-+...+.+.+.+..+|+ ..|.|... ..+.+ .-...+++.+|.+|+.|++.+..|..+..++...+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs--~~w~f~~~-----~~vk~--~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGS--QIWNFVIL-----ETVKV--RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CCEEEEEEccCcEEEEEecchh--heeeeeeh-----hhhcc--ceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 3344445444556666655543 24544221 11222 134578899999999999999999998887766553
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
..+.-.+-+..|-...|+.+...|.|.--..
T Consensus 134 gG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 134 GGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred CCceeccceecCCCceEEEEeccceEEEEcc
Confidence 3333333344553334444444454443333
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=3.7 Score=55.88 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=58.8
Q ss_pred CCeEEEEEecCCCEEEEEe------CCC--cEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeC------------
Q 000085 2121 REILCCCVSSDLGVVVSCS------DSS--DLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKL------------ 2180 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS------~DG--tIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdss------------ 2180 (2342)
..+...+++|+|+.++..- .|+ .|.+++. .+.......+.....-+|++||..+.+-..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4678889999999876554 244 4555554 333333334444667789999764433321
Q ss_pred CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2181 QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2181 dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
++.+.+..+++..... ...+.|..+.|||||..++...
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 2344444444432222 2356899999999999988654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=90.96 E-value=5.3 Score=42.91 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=49.3
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+.+.+.|..||+ -|+.|+.|..||||+-+ ..+..+.. ++.|++++-... ..++.+-.+|||-+|+-.
T Consensus 4 al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 4 ALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred EEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 333455666665 88999999999999854 45555543 456888887755 679999999999999753
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=1.1e+02 Score=42.92 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=39.2
Q ss_pred eeEEEEEcCCCCEEEEEEc-----CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC
Q 000085 1998 SSAVVSITHDKEIITGGHV-----DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ 2058 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~-----DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~ 2058 (2342)
.+..+.+||||++|+.+.. ...|++.|+.+|..+.....+.. ..++|++|++.|+-...
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEe
Confidence 3445788999998886643 23588999988864432222222 45899999887766544
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.1 Score=62.02 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=52.1
Q ss_pred CCEEEEEEcCCcEEEEecCCc-ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGA-KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tg-kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..++.|+..|.+-..|..+. .....-..-.++|+|++|+.+|..++.|-.+|.|.+||+.++...+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 446888888888888887653 111222224579999999999999999999999999999986554433
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.2 Score=61.64 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=69.3
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccc
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDF 2247 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaF 2247 (2342)
.-.+..++.++..|.+..++.+|..-. .....-.++|++++|+.||..++.|-
T Consensus 96 a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~-------------------------- 149 (1206)
T KOG2079|consen 96 AIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL-------------------------- 149 (1206)
T ss_pred eeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc--------------------------
Confidence 334444555555666666665553110 00111467999999999999998763
Q ss_pred ccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEE---EecCCCEEEEEeCCCcEEEEe
Q 000085 2248 DLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALA---LNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2248 spd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLa---fSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+|.|.+||+.+++.++.+. .|+.+.+++- +..++..++++...|+ +|.
T Consensus 150 ---------------~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 150 ---------------GDGHVTVWDMHRAKILKVIT-EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ---------------CCCcEEEEEccCCcceeeee-ecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 36889999999999998888 6776666554 4456677888888887 555
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=89.27 E-value=47 Score=40.74 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=69.4
Q ss_pred EEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2114 HVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
..+.+-...+..++|+|+.+ ++++....+.|...+. +|+.++++... ....+++..+|.+++.+-+.+.+.++.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34566667799999999855 5666777888888886 68898887653 3578888889999888888899988888
Q ss_pred C--Ccee-----eeecC--C--CCCCeEEEEEccCCCEEEEEe
Q 000085 2190 N--GVLV-----ARAKL--P--LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2190 n--G~~L-----~s~~~--~--Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. +..+ ..... . ++..+-.++|++.++.|+++-
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 3 2111 11111 1 556799999999888777664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=89.10 E-value=5 Score=55.72 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=92.0
Q ss_pred CCEEE-EEEcCCcEEEEecCCcccceecccCCCC-eEEEEecC-----CCCEEEEEeCCCceEEEeccCCccccccccCC
Q 000085 2008 KEIIT-GGHVDGSIKLLTSDGAKTLETASGHCAP-VTCLALSS-----DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2008 GklLA-SGS~DGsIrVWDl~tgkll~tL~GHt~~-VtcLAfSP-----DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
.++|. .....+.++-.|+..|+.+..+..|.+. |..++=.. +....+.|-.+..+..||.+-...
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-------- 564 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-------- 564 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--------
Confidence 33433 3345678999999999999999988765 65554321 133456677788899999875210
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-Ee
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR-LV 2159 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs-L~ 2159 (2342)
.++ + ...+ .+......+|++-+.+| +||.|+.+|.|++||- .|..-++ |.
T Consensus 565 --------------k~v---------~---~~~k-~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp 615 (794)
T PF08553_consen 565 --------------KLV---------D---SQSK-QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALP 615 (794)
T ss_pred --------------cee---------e---cccc-ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCC
Confidence 000 0 0001 12334567788766555 6889999999999993 4433333 33
Q ss_pred c--CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2160 G--VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2160 g--h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
+ ..+..|.++.||++++..+.+- +.+++
T Consensus 616 ~lG~pI~~iDvt~DGkwilaTc~ty-LlLi~ 645 (794)
T PF08553_consen 616 GLGDPIIGIDVTADGKWILATCKTY-LLLID 645 (794)
T ss_pred CCCCCeeEEEecCCCcEEEEeecce-EEEEE
Confidence 2 4588999999999998876543 44444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.94 E-value=23 Score=45.96 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=64.7
Q ss_pred eEEEEEecCCCEEEEE-eCCC----cEEEEECCCCeEEEE-EecCCcEEEEEecCCcEEEEEeCCC-----------eEE
Q 000085 2123 ILCCCVSSDLGVVVSC-SDSS----DLLLHSIRRGRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQH-----------TLS 2185 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSG-S~DG----tIrIWDLrTGklIrs-L~gh~vssLSfSpDG~IlVwdssdG-----------sI~ 2185 (2342)
+...+++|++++++-+ +..| ++++.|+.+|+.+.. +.......++|.+||+.+++...+. .+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3467789999988743 4444 599999999987653 3433344499999999888874332 355
Q ss_pred EEEeCCceee-eecCC--CCC-CeEEEEEccCCCEEEEEeCCCC
Q 000085 2186 SFTLNGVLVA-RAKLP--LSG-SIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2186 I~dlnG~~L~-s~~~~--Hs~-~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.+.+....-. ...+. ... ....+..++||++++..+..+.
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~ 249 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT 249 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc
Confidence 5555321111 11111 222 2678899999999997764444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.49 E-value=1 Score=53.36 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=73.8
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCccee-EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSS-AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Sv-t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
.++.++.+++++.+.+|+..... ..+.. . ..+..++ +.+....++.+..+|++||.||.|++.-++.+...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g----~~~d~-~---~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEG----AHSDR-V---CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred cCceEEeecccceEEEecCCccc----hHHHh-h---hcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 34556677888899998754200 00111 1 1122222 22444455668899999999999999998888888
Q ss_pred ccCC-CCeEEEEecCCCCEEEEE--eCCCceEEEeccC
Q 000085 2035 SGHC-APVTCLALSSDSNFLVTG--SQDTTILLWRIHR 2069 (2342)
Q Consensus 2035 ~GHt-~~VtcLAfSPDG~~LaSG--S~DGTVrVWDl~t 2069 (2342)
.+|+ .++..+..+..++++++. |.|..++.|++..
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 8888 777777777778888888 8888899998875
|
|
| >PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.2 Score=43.22 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=41.9
Q ss_pred CCCceEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeec
Q 000085 1470 ELDERIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSR 1538 (2342)
Q Consensus 1470 e~~EkVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~R 1538 (2342)
+..|.++-+..|.+..+.....|+|.||+++|+|..+...... ....+++.+|..|-+.
T Consensus 10 p~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 10 PEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEKE 68 (69)
T ss_dssp -TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEEE
T ss_pred CCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEEe
Confidence 3588999999999999999999999999999999864322110 2578899999988653
|
It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.33 E-value=16 Score=44.88 Aligned_cols=156 Identities=13% Similarity=0.147 Sum_probs=93.6
Q ss_pred EEEecCCC-EEEEEeCCCc-EEEEECCCCeEEEEEecCCcE----EEEEecCCcEEEEEeC-----CCeEEEEEeCCcee
Q 000085 2126 CCVSSDLG-VVVSCSDSSD-LLLHSIRRGRLIRRLVGVDAH----AVSLSSEGVIMTWNKL-----QHTLSSFTLNGVLV 2194 (2342)
Q Consensus 2126 VafSPDg~-lLaSGS~DGt-IrIWDLrTGklIrsL~gh~vs----sLSfSpDG~IlVwdss-----dGsI~I~dlnG~~L 2194 (2342)
++|+|... -++.+-.-|+ ..++|..+++...++...+.. .=+||+||.++...-. .|.|-+|+......
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 45555432 3344444443 467888887776665543321 2368999998775432 36789999874333
Q ss_pred eeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2195 ARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2195 ~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
....++ |.-....|.+.+||+.++.+. |.+. .+..|...... +.....++.+.|..
T Consensus 153 rvgE~~t~GiGpHev~lm~DGrtlvvan--GGIe---------------thpdfgR~~lN------ldsMePSlvlld~a 209 (366)
T COG3490 153 RVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIE---------------THPDFGRTELN------LDSMEPSLVLLDAA 209 (366)
T ss_pred eecccccCCcCcceeEEecCCcEEEEeC--Ccee---------------cccccCccccc------hhhcCccEEEEecc
Confidence 332232 666778899999999999763 3210 11111111111 11235678888888
Q ss_pred CCeEEEEEecC---CCCCeEEEEEecCCCEEEEE
Q 000085 2274 TLKVFHVLKLG---EGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2274 Tgk~L~tL~lg---Hs~~ItsLafSPDG~~LaSG 2304 (2342)
+|+++.+..+. +.-.|+.++..+||+.++.+
T Consensus 210 tG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 210 TGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred ccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 88877654432 34568889999999866654
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.03 E-value=0.34 Score=63.27 Aligned_cols=156 Identities=11% Similarity=0.139 Sum_probs=98.7
Q ss_pred ccCcceeEEEEEcCC-CCEEEEEE----cCCcEEEEecCCc--ccce--eccc-CCCCeEEEEecCCCCEEEEEeCCCce
Q 000085 1993 SSGIRSSAVVSITHD-KEIITGGH----VDGSIKLLTSDGA--KTLE--TASG-HCAPVTCLALSSDSNFLVTGSQDTTI 2062 (2342)
Q Consensus 1993 s~gI~Svt~VafSpD-GklLASGS----~DGsIrVWDl~tg--kll~--tL~G-Ht~~VtcLAfSPDG~~LaSGS~DGTV 2062 (2342)
+...+.+++++|++- .+.||+|. .|..+.|||+.++ .+.. .+.+ -...+..++|-.+.+.+.+|...+.+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 344566788999874 45888885 4678999999876 2221 1222 33456688888888999999999999
Q ss_pred EEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCcccccc----CCceEEecCCCC----CeEEEEEecC-C
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKSRRRRI----EGPIHVLRGHHR----EILCCCVSSD-L 2132 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s~~~~i----~~~l~~L~GHs~----~Vt~VafSPD-g 2132 (2342)
+++|++....... ......+..+.+.| .+.+++....+.+..|+. +.++..+..... .+..++|+|. .
T Consensus 179 ~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 179 HIFDLRQSLDSVS--SVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred hhhhhhhhhhhhh--hhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 9999984211110 11112344455566 556666655555555663 334443333333 4899999986 3
Q ss_pred CEEEEEeCC-CcEEEEECC
Q 000085 2133 GVVVSCSDS-SDLLLHSIR 2150 (2342)
Q Consensus 2133 ~lLaSGS~D-GtIrIWDLr 2150 (2342)
.++++...| ++|+.+|+.
T Consensus 257 glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 257 GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred chhhhhccCcceEEEeccc
Confidence 455666654 789999985
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=86.38 E-value=25 Score=42.94 Aligned_cols=101 Identities=21% Similarity=0.194 Sum_probs=60.7
Q ss_pred CeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEE-EecCCcEEEEEecCCcEEEEEeCCCeEEEEE--eCCceee-e
Q 000085 2122 EILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRR-LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFT--LNGVLVA-R 2196 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrs-L~gh~vssLSfSpDG~IlVwdssdGsI~I~d--lnG~~L~-s 2196 (2342)
.+...++++++..++... .++.-.+|-...+..... +.+.....-+|+++|.+.+....+....++. ..+.... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 678899999998776655 233333333333333333 3555566778999988777765555544543 2232211 1
Q ss_pred ecCCCC-CCeEEEEEccCCCEEEEEeC
Q 000085 2197 AKLPLS-GSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2197 ~~~~Hs-~~ItsLafSPDGk~LaSGS~ 2222 (2342)
...... ..|+++.+||||..++.-..
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEe
Confidence 111112 28999999999999887653
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.90 E-value=83 Score=39.84 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=80.5
Q ss_pred CCeEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEE-EEeCCCeEEE
Q 000085 2121 REILCCCVSSDLGVVVSCSD-----------SSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMT-WNKLQHTLSS 2186 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~-----------DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlV-wdssdGsI~I 2186 (2342)
...+.+.+.|+|.+.++... -|.|+..|. .+..++.+..+ ..+.++|||||+.+. .++..+.++.
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34567788888887665443 133444444 45555555442 246799999996554 4555678888
Q ss_pred EEeCC---ceeee---ecC-CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2187 FTLNG---VLVAR---AKL-PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2187 ~dlnG---~~L~s---~~~-~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
|++.. ..-.. ... ...+..-.++...+|.+.+++.
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-------------------------------------- 231 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-------------------------------------- 231 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc--------------------------------------
Confidence 87752 11000 000 0223333444444444443221
Q ss_pred ccCCC-CeEEEEECCCCeEEEEEecCCCCCeEEEEEe-cCCCEEEEEeC
Q 000085 2260 FDFPS-PSICFLDLHTLKVFHVLKLGEGQDITALALN-KDNTNLLVSTA 2306 (2342)
Q Consensus 2260 ias~D-GsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-PDG~~LaSGSs 2306 (2342)
.+ +.|.+|+.. ++.+..+...+ ..+++++|- ++.+.|++.+.
T Consensus 232 ---~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 232 ---WGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ---cCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEec
Confidence 12 378899988 88888888444 567888875 45566655443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=85.81 E-value=1.5e+02 Score=40.29 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=23.0
Q ss_pred cCCC---EEEEEeCCCcEEEEECCCCeEEE
Q 000085 2130 SDLG---VVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2130 PDg~---lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.+|+ .++.+.++|.+++.|-++|+.+.
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 4665 78899999999999999999863
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=85.79 E-value=30 Score=47.31 Aligned_cols=60 Identities=3% Similarity=-0.070 Sum_probs=33.8
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeE--EEEEecCCcEEEEEecCCcEEEEEeCCC------eEEEEEeC
Q 000085 2131 DLGVVVSCSDSS-----DLLLHSIRRGRL--IRRLVGVDAHAVSLSSEGVIMTWNKLQH------TLSSFTLN 2190 (2342)
Q Consensus 2131 Dg~lLaSGS~DG-----tIrIWDLrTGkl--IrsL~gh~vssLSfSpDG~IlVwdssdG------sI~I~dln 2190 (2342)
+|.+.|.||.|| +|-.||..+.+. +..+.......-...-+|.+.+.++.++ .+..|+..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 577778888886 466677765432 2212111123334455788887776443 45666654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.92 E-value=39 Score=46.07 Aligned_cols=51 Identities=4% Similarity=-0.137 Sum_probs=27.7
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEE--EEecCCcEEEEEecCCcEEEEEeCC
Q 000085 2131 DLGVVVSCSDSS-----DLLLHSIRRGRLIR--RLVGVDAHAVSLSSEGVIMTWNKLQ 2181 (2342)
Q Consensus 2131 Dg~lLaSGS~DG-----tIrIWDLrTGklIr--sL~gh~vssLSfSpDG~IlVwdssd 2181 (2342)
++.+.+.||.++ ++..||..+.+-.. .+........+..-+|.+.+.++.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCC
Confidence 566667777654 47788887764322 1111111122234478888877644
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.81 E-value=44 Score=41.59 Aligned_cols=104 Identities=11% Similarity=0.186 Sum_probs=79.8
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCc-
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV- 2192 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~- 2192 (2342)
.|-...+.++.|+|+.+.+++......-.||=..+|+.++++... ....+.+..+|.+.+.+-++..+.++.++..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344556999999999999999988888889988899999998753 3567788889999999999999888887532
Q ss_pred -eeee----ec---CCC-CCCeEEEEEccCCCEEEEE
Q 000085 2193 -LVAR----AK---LPL-SGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2193 -~L~s----~~---~~H-s~~ItsLafSPDGk~LaSG 2220 (2342)
.+.. .. ..+ +...-.++|+|..+.+..+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a 198 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA 198 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEE
Confidence 1111 11 113 6678889999988777765
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=84.43 E-value=9.3 Score=52.01 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=77.9
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEec--CCCCEEEEEeCCCceEEEeccCCc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLALS--SDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfS--PDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
++.....+.-|.-++..++.+....+.|||...+.....-. ...+.|.++.|. |||+.+++.+..+.|.++.-....
T Consensus 28 ~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 28 GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 34444456666667766666666789999998876433211 356789999995 689999999999999998653311
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH-REILCCCVSSDLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs-~~Vt~VafSPDg~lLaSGS~DGtIrIWDL 2149 (2342)
... ....|..-+ ...+..|+ .+|.+..|.++|..++.++ +.+.|+|-
T Consensus 108 y~~----------------------------~~p~w~~i~-~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 108 YTN----------------------------KGPSWAPIR-KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhc----------------------------CCcccceeE-EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 000 000010000 11123343 5789999999998776554 46777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.05 E-value=8.8 Score=50.17 Aligned_cols=136 Identities=14% Similarity=0.211 Sum_probs=84.0
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcE-------EEEEeCCCeEEEEEeC--Cc-eeee---ecCCC
Q 000085 2136 VSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVI-------MTWNKLQHTLSSFTLN--GV-LVAR---AKLPL 2201 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~I-------lVwdssdGsI~I~dln--G~-~L~s---~~~~H 2201 (2342)
.++..-..++-.|+.+|+.+.....+. +..+.+.|+++. -+.+..+..+..|+.. |. .+.. ..+..
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 345555678888999999998887654 577777776642 2345556666666653 22 1110 00112
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEE
Q 000085 2202 SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVL 2281 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL 2281 (2342)
.....|.+-..+|. +++|| .+|.|++||- .+..-.+.
T Consensus 430 k~nFsc~aTT~sG~-IvvgS-----------------------------------------~~GdIRLYdr-i~~~AKTA 466 (644)
T KOG2395|consen 430 KNNFSCFATTESGY-IVVGS-----------------------------------------LKGDIRLYDR-IGRRAKTA 466 (644)
T ss_pred ccccceeeecCCce-EEEee-----------------------------------------cCCcEEeehh-hhhhhhhc
Confidence 23344444444442 33333 3788999998 55544444
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2282 KLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2282 ~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
..+-+.+|..|..+.||.+|+.. .+..|.+-+.
T Consensus 467 lPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT 499 (644)
T ss_pred ccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence 44889999999999999987754 4566766663
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=81.71 E-value=2.5e+02 Score=40.01 Aligned_cols=56 Identities=25% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCeEEEEECCCCeEEEEEecCCCC--------CeEEEEEec-CCC---EEEEEeCCCcEEEEeCCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQ--------DITALALNK-DNT---NLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~--------~ItsLafSP-DG~---~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.++|.-.|..||+....++..|.+ ...-+.+.. +|+ .++.++.+|.++++|..+.+
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 567888999999988887743321 111223333 563 78899999999999976553
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.53 E-value=42 Score=40.42 Aligned_cols=128 Identities=16% Similarity=0.080 Sum_probs=79.2
Q ss_pred CccccccCCCCCceeecCCCcccccc-CC-ceEEecCCC--------CCeEEEEEecCCCEE-EEEeCCCcEEEEE--CC
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRI-EG-PIHVLRGHH--------REILCCCVSSDLGVV-VSCSDSSDLLLHS--IR 2150 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i-~~-~l~~L~GHs--------~~Vt~VafSPDg~lL-aSGS~DGtIrIWD--Lr 2150 (2342)
...-..+|+|++.+....+....... .. ...-+.+|. .--+.++|+.+.+.+ ++-+.+-+|.-|| ..
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~ 190 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCP 190 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCC
Confidence 34445678888865544442211111 11 122223332 333567888776655 4666777887787 56
Q ss_pred CCeE-----EEEEec------CCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEcc
Q 000085 2151 RGRL-----IRRLVG------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISL 2212 (2342)
Q Consensus 2151 TGkl-----IrsL~g------h~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSP 2212 (2342)
+|.. +..++. ....-+++..+|.+.+.....+++..++.. |+.+.+..++ ...|+|++|-.
T Consensus 191 tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 191 TGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred cccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 6643 333332 113456677799999988888999888875 7777777766 78899999964
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=81.41 E-value=3.1 Score=38.02 Aligned_cols=34 Identities=6% Similarity=0.236 Sum_probs=29.9
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL 2154 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl 2154 (2342)
...|.+++|+|..++++.|+.||.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=81.21 E-value=36 Score=36.82 Aligned_cols=92 Identities=11% Similarity=0.175 Sum_probs=57.7
Q ss_pred eEEEEEec---C-CCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2123 ILCCCVSS---D-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2123 Vt~VafSP---D-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
|+++++.. | .+.|+.||.|..|++|+ ....+..+.-. .+..++-... ..++++..+|+|-+|+-..+.-+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi- 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI- 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee-
Confidence 56677654 2 25799999999999998 44666666543 3555555555 457888889998888754322111
Q ss_pred cCCCCCCeEEEEEcc---CCC-EEEEE
Q 000085 2198 KLPLSGSIGCMEISL---DGH-SALIG 2220 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSP---DGk-~LaSG 2220 (2342)
.....++++++.. ||. -|++|
T Consensus 78 --KSK~~~~~~~~~D~~gdG~~eLI~G 102 (111)
T PF14783_consen 78 --KSKNQVTSMAFYDINGDGVPELIVG 102 (111)
T ss_pred --ccCCCeEEEEEEcCCCCCceEEEEE
Confidence 1334566766543 332 45555
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.10 E-value=4.9 Score=47.89 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=41.7
Q ss_pred CCEEEEEEcCCcEEEEecCC-cccceecccCCCCeEEE-EecCCCCEEEEEeCCCceEEEeccCC
Q 000085 2008 KEIITGGHVDGSIKLLTSDG-AKTLETASGHCAPVTCL-ALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~t-gkll~tL~GHt~~VtcL-AfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
+.-+++|+.+|.|++|+..- |........-...|.|. .-..++.+.++++.||.|+.|++.-.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 45688899999999999862 22222222222333333 33345678999999999999998764
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=80.07 E-value=1.8e+02 Score=36.87 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=45.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecC------Ccc-cceeccc-----CCCCeEEEEecCCCCE------------EEEEe
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSD------GAK-TLETASG-----HCAPVTCLALSSDSNF------------LVTGS 2057 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~------tgk-ll~tL~G-----Ht~~VtcLAfSPDG~~------------LaSGS 2057 (2342)
++++|.+.+-++....+...+||.. ..+ ++-++.. -....|.+.|+....+ ++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 7889999888888788899999986 111 2223331 2245777888754333 56678
Q ss_pred CCCceEEEeccC
Q 000085 2058 QDTTILLWRIHR 2069 (2342)
Q Consensus 2058 ~DGTVrVWDl~t 2069 (2342)
.||||.-|...-
T Consensus 108 EdGTisaW~p~v 119 (336)
T TIGR03118 108 EDGTLSGWAPAL 119 (336)
T ss_pred CCceEEeecCcC
Confidence 888888887543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2342 | ||||
| 1t77_A | 414 | Crystal Structure Of The Ph-Beach Domains Of Human | 1e-107 | ||
| 1mi1_A | 414 | Crystal Structure Of The Ph-Beach Domain Of Human N | 1e-101 |
| >pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414 | Back alignment and structure |
|
| >pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2342 | |||
| 1t77_A | 414 | Lipopolysaccharide-responsive and beige-like ancho | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.98 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.98 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.96 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.95 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.95 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.95 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.95 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.95 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.95 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.95 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.95 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.95 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.95 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.94 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.94 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.94 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.94 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.94 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.93 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.93 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.92 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.92 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.92 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.92 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.92 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.92 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.92 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.91 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.91 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.91 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.91 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.91 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.91 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.91 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.91 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.9 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.9 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.9 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.9 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.9 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.9 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.9 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.9 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.89 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.89 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.89 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.88 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.88 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.87 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.86 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.85 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.85 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.84 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.84 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.84 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.83 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.82 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.82 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.81 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.78 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.78 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.77 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.76 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.75 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.75 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.74 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.74 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.73 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.73 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.73 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.72 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.71 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.69 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.69 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.67 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.63 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.63 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.62 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.62 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.62 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.59 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.58 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.57 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.55 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.55 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.54 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.53 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.52 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.52 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.5 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.49 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.48 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.47 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.47 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.41 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.4 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.36 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.36 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.35 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.34 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.34 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.33 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.31 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.31 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.31 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.3 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.28 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.28 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.28 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.25 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.24 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.19 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.18 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.17 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.17 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.16 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.15 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.14 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.12 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.1 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.08 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.03 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.03 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.0 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.99 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.98 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.97 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.91 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.88 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.88 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.88 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.84 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.84 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.83 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.8 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.79 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.79 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.76 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.75 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.72 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.72 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.59 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.57 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.55 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.54 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.51 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.47 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.44 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.41 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.39 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.38 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.38 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.31 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.3 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.27 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.27 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.27 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.17 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.16 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.07 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.96 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.96 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.94 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.9 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.89 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.87 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.84 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.73 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.72 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.7 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.69 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.66 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.51 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.47 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.47 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.47 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.41 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.39 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.33 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.31 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.3 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.25 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.25 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.24 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.22 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.14 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.12 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.11 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.09 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.08 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.07 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.07 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.03 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.0 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.93 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.87 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.87 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.85 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.74 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.69 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.66 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.52 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.51 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.43 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.38 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.36 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.3 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.15 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.98 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.92 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.84 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.75 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.71 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 95.67 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.59 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.42 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.28 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.19 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.16 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.05 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 94.98 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.29 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 94.14 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.08 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 93.94 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 93.86 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.78 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 93.61 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.47 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.4 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 93.37 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 92.57 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.35 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.17 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 91.94 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 91.91 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.39 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 91.25 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 91.18 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 90.71 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 88.69 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 88.07 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 87.89 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 87.5 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 86.97 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 86.83 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 85.97 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 85.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 84.52 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 84.05 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 83.99 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 83.56 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 83.55 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 83.06 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 82.26 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 81.77 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 80.41 |
| >1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-121 Score=1109.62 Aligned_cols=404 Identities=48% Similarity=0.894 Sum_probs=371.7
Q ss_pred eEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCCCc---cccccccceEeeccceeEEeeccccCcccEEEEE
Q 000085 1474 RIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTS---ELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELF 1550 (2342)
Q Consensus 1474 kVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~~~---~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif 1550 (2342)
.|+++++|+||+|+.+.+|+|.||+++|||+++++.+...... ........++|.+++|++|++|||+|+++|||||
T Consensus 2 ~v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~Rryll~~~alEif 81 (414)
T 1t77_A 2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIF 81 (414)
T ss_dssp CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcceEecchheeeeeeeeccCcceeEEEE
Confidence 5789999999999999999999999999999876433221111 1112335679999999999999999999999999
Q ss_pred EeCCceEEEEcCChhhHHHHHHHHHhcC------CCCCccccccccChHHHHHHHHHHHhcccCCCChHHHHHHHHHHhc
Q 000085 1551 MVDRSNFFFDFGSTEGRRNAYRAIVQAR------PPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAG 1624 (2342)
Q Consensus 1551 ~~~~~s~f~~F~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~t~~W~~g~ISNFeYLm~LN~~aG 1624 (2342)
+.||++|||+|.+.+.+++++..+.... .|+...+ ....|.++++.+++|++|++|+||||||||+||++||
T Consensus 82 ~~~g~s~~l~F~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~t~~W~~g~iSNFeYLm~LN~~aG 159 (414)
T 1t77_A 82 MANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRI--SLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAG 159 (414)
T ss_dssp ETTSCEEEEECSSHHHHHHHHHHSCSCTTCSTTSCCCCTTT--TTCCHHHHHHHCSHHHHHHTTSSCHHHHHHHHHHHHT
T ss_pred EcCCcEEEEEcCCHHHHHHHHHhccccccccccCCcccccc--ccCCHHHHhhhhhHHHHHhcCCccHHHHHHHHHHHcC
Confidence 9999999999999877777666542110 1221112 2335788899999999999999999999999999999
Q ss_pred CCcCCCCCCcccceeccCCCCCccCCCCCCccccCCCccccCCHHHHHHHHHHhccCCCCCCCCCcccCCCCChhhHHhh
Q 000085 1625 RSYNDITQYPVFPWILSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYY 1704 (2342)
Q Consensus 1625 RS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RDLsKPiGal~~~r~~~~~~ry~~~~d~~~~~f~ygshyS~~~~V~~y 1704 (2342)
|||||++|||||||||+||+|++|||+||.+||||+|||||||++|++.|++||++++++.+|+||||+|||++++|++|
T Consensus 160 Rs~nDl~qYPVFPWVl~dy~s~~ldl~~~~~~RDLskpigaln~~r~~~~~~ry~~~~~~~~~~f~ygshyS~~~~V~~y 239 (414)
T 1t77_A 160 RSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAW 239 (414)
T ss_dssp CCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHHHCCCSSSCCCSBSSCSCCHHHHHHH
T ss_pred CCccccccCcccceeeccCcccccccCCccccccCCCchhhcCHHHHHHHHHHHHhhcccCCCCcccCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hccCCCchhhhHhhhCCCCCCCCcccchHHHHHhhhhcCCCCcccccccccccccccccCCCCCcccccCCCcCCCccCC
Q 000085 1705 LFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLP 1784 (2342)
Q Consensus 1705 L~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~~~~~~~~dvkELIPEfFy~Pefl~N~n~~~lG~~q~g~~v~dV~LP 1784 (2342)
|+|+||||++|+.||+|+||+|||||+||.++|++|.++++|||||||||||+||||+|.|+|+||++|+|+.|+||+||
T Consensus 240 L~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~~~~~d~kElIPEFf~~Pe~l~N~n~~~lG~~~~g~~v~DV~LP 319 (414)
T 1t77_A 240 LLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELP 319 (414)
T ss_dssp HTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHHHCTTCCCCBCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCC
T ss_pred HhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHhccCCCccccCchhhcChHhhccccCCccccccCCCCCCceeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchhhhhcCccccccccccccccccCCCHHHHHHHHHHHHHc
Q 000085 1785 PWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFGYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYF 1864 (2342)
Q Consensus 1785 ~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~Nvf~~~tY~~~vd~~~i~d~~~~~~~~~~i~~f 1864 (2342)
|||++|++||++||+||||+|||+|||+||||||||||+|++|++|.|||||+||+|.||++.++||.+|.++++||.||
T Consensus 320 ~Wa~sp~~FI~~~R~aLES~~VS~~Lh~WIDLiFGykq~G~~Av~a~Nvf~~ltY~~~vd~~~i~d~~~~~a~~~~i~~f 399 (414)
T 1t77_A 320 PWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSF 399 (414)
T ss_dssp TTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGSTTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcChHhhhhhhhhhhhhcCcccCCHHHHhcCCccccceecCcccccccCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCC
Q 000085 1865 GQTPSQLLTVPHMKK 1879 (2342)
Q Consensus 1865 Gq~P~QLF~~pHp~R 1879 (2342)
||||.|||++|||+|
T Consensus 400 GQ~P~QLF~~pHP~R 414 (414)
T 1t77_A 400 GQTPSQLLIEPHPPR 414 (414)
T ss_dssp CCCCCCCCSSCCCCC
T ss_pred CCChhhhhcCCCCCC
Confidence 999999999999998
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=361.09 Aligned_cols=309 Identities=15% Similarity=0.141 Sum_probs=247.7
Q ss_pred cceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1996 IRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1996 I~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
...+.+++|+|++. .|++|+.|++|++||..++++..++.+|.+.|++++|+|||++|+||+.|++|++||+.++....
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee
Confidence 34567799999997 69999999999999999999999999999999999999999999999999999999998876655
Q ss_pred cccc------CCCCCCccccccCCCCCceeecCCCc-cccccCC------------------------------------
Q 000085 2075 TGTI------EPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG------------------------------------ 2111 (2342)
Q Consensus 2075 t~~~------~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~------------------------------------ 2111 (2342)
.+.. .|...+.+++|+|+|..+++++.|+. +.|+...
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 4422 67889999999999999999998865 4465421
Q ss_pred ---------ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe-----------------------
Q 000085 2112 ---------PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV----------------------- 2159 (2342)
Q Consensus 2112 ---------~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~----------------------- 2159 (2342)
....+.+|...|++++|+|+++++++++.||+|++||+.+++....+.
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~ 386 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 386 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEc
Confidence 123557899999999999999999999999999999998775533210
Q ss_pred -------------------------------------------------------------cCCcEEEEEecCCcEEEEE
Q 000085 2160 -------------------------------------------------------------GVDAHAVSLSSEGVIMTWN 2178 (2342)
Q Consensus 2160 -------------------------------------------------------------gh~vssLSfSpDG~IlVwd 2178 (2342)
...+.+++|+|||++++.+
T Consensus 387 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg 466 (611)
T 1nr0_A 387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG 466 (611)
T ss_dssp TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe
Confidence 0113578899999999999
Q ss_pred eCCCeEEEEEeCCceee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC--------------CCCC
Q 000085 2179 KLQHTLSSFTLNGVLVA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS--------------KQSG 2243 (2342)
Q Consensus 2179 ssdGsI~I~dlnG~~L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~--------------~~~~ 2243 (2342)
..++.|++|++.+..+. .....|...|++++|+|||++|++++.|+.. ++|+... ....
T Consensus 467 s~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v------~~w~~~~~~~~~~~~~~~~H~~~V~ 540 (611)
T 1nr0_A 467 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV------IPYSVANNFELAHTNSWTFHTAKVA 540 (611)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE------EEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred CCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCE------EEEEcCCCCceeeeeeeeeccccee
Confidence 99999999999765432 1124599999999999999999999988773 3444332 1123
Q ss_pred ccccccccccccCCCCccCCCCeEEEEECCCCe-EE-EEEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2244 TEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VF-HVLKLGE-GQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2244 ~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L-~tL~lgH-s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.+.|+|+...... +..|++|++||+.++. .+ ..+. +| ...|++++|+|+++ |++|+.||+|++|+++
T Consensus 541 ~v~fspdg~~las----gs~D~~v~lW~~~~~~~~~~~~~~-~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 541 CVSWSPDNVRLAT----GSLDNSVIVWNMNKPSDHPIIIKG-AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEECTTSSEEEE----EETTSCEEEEETTCTTSCCEEETT-SSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEECCCCCEEEE----EECCCcEEEEECCCcccccchhhc-cCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 3466666543322 3359999999998865 33 3444 88 89999999999998 9999999999999953
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=338.60 Aligned_cols=276 Identities=15% Similarity=0.186 Sum_probs=248.5
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++|+|++.+|++|+.||+|+|||+.+++...++.+|.+.|++++|+|++++|+||+.|++|++||+.++.+..++
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999887665544
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..|...+.++.++|++..+++++.|+. ..|+. ..++..+.+|...|.+++|++++.++++|+.||+|++||+++++
T Consensus 189 -~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 189 -HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267 (410)
T ss_dssp -CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred -cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 567788999999999999999998875 44665 45678899999999999999999999999999999999999999
Q ss_pred EEEEEecCC--cEEEEEecC--------------------CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc
Q 000085 2154 LIRRLVGVD--AHAVSLSSE--------------------GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2154 lIrsL~gh~--vssLSfSpD--------------------G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS 2211 (2342)
+...+.+|. +.+++|+|+ |.+++.+..++.|++|++..........+|...|++++|+
T Consensus 268 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 347 (410)
T 1vyh_C 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 347 (410)
T ss_dssp EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc
Confidence 999998775 788999986 6789999999999999997554444455699999999999
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA 2291 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its 2291 (2342)
|+|++|++|+. |+.|++||+.+++++.++. +|...|++
T Consensus 348 ~~g~~l~s~s~-----------------------------------------D~~i~vwd~~~~~~~~~~~-~h~~~v~~ 385 (410)
T 1vyh_C 348 SGGKFILSCAD-----------------------------------------DKTLRVWDYKNKRCMKTLN-AHEHFVTS 385 (410)
T ss_dssp SSSSCEEEEET-----------------------------------------TTEEEEECCTTSCCCEEEE-CCSSCEEE
T ss_pred CCCCEEEEEeC-----------------------------------------CCeEEEEECCCCceEEEEc-CCCCcEEE
Confidence 99999999973 7889999999999999998 99999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2292 LALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2292 LafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
++|+|++.+|++|+.||+|+||+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999984
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=322.40 Aligned_cols=278 Identities=14% Similarity=0.129 Sum_probs=243.0
Q ss_pred cceeEEEEEcCC----CCEEEEEEcCCcEEEEecCCccc--ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 1996 IRSSAVVSITHD----KEIITGGHVDGSIKLLTSDGAKT--LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1996 I~Svt~VafSpD----GklLASGS~DGsIrVWDl~tgkl--l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
...|.+++|+|+ +.+|++|+.|++|+||++.+++. ...+.+|...|++++|++++.+++||+.|++|++||+.+
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~ 111 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 345667999875 56999999999999999987653 456899999999999999999999999999999999998
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
+...... ..+...+..++++|+++.++++..++. ..|+. ......+..|...|.+++|+|+++++++|+.||+|++
T Consensus 112 ~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~i 190 (321)
T 3ow8_A 112 GKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINI 190 (321)
T ss_dssp TEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEE
Confidence 7665544 345567888999999999999988765 34554 4556778889999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2147 HSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
||+++++.+..+.+|. +..++|+|+|.+++.+..++.|++|++...........|...|.+++|+|+|.+|++|+.
T Consensus 191 wd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-- 268 (321)
T 3ow8_A 191 FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS-- 268 (321)
T ss_dssp EETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred EECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC--
Confidence 9999999999998875 789999999999999999999999999765555555669999999999999999999973
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
|++|+|||+.+++++.++. +|...|++++|+|++++|+++
T Consensus 269 ---------------------------------------D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 269 ---------------------------------------DKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp ---------------------------------------TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEE
T ss_pred ---------------------------------------CCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEE
Confidence 6779999999999999998 899999999999999999999
Q ss_pred eCCCcEEEEeCC
Q 000085 2305 TADKQLIVFTDP 2316 (2342)
Q Consensus 2305 SsDGsIrVWDi~ 2316 (2342)
+.||.|++||.|
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999964
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=321.65 Aligned_cols=274 Identities=14% Similarity=0.166 Sum_probs=238.7
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc---
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR--- 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~--- 2074 (2342)
.+.+++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++|++.+.....
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 136 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999998753211
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCC-cccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.....|...+.++.+++++. +++++.|+ +..|+. ...+..+.+|.+.|++++|+|++.++++|+.||+|++||+++
T Consensus 137 ~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~ 215 (340)
T 1got_B 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215 (340)
T ss_dssp EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 12456777888889988876 55555555 455765 456788899999999999999999999999999999999999
Q ss_pred CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeeecC-CCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2152 GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARAKL-PLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~~~-~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
+.++..+.+|. +..++|+|+|.+++.+..++.+++|++... .+..... .+...|++++|+|+|+++++|+.
T Consensus 216 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----- 290 (340)
T 1got_B 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----- 290 (340)
T ss_dssp CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-----
T ss_pred CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC-----
Confidence 99999998875 789999999999999999999999999743 3333221 14458999999999999999973
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
|+.|++||+.+++.+..+. +|...|++++|+|+|.+|++|+.|
T Consensus 291 ------------------------------------d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 291 ------------------------------------DFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp ------------------------------------TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETT
T ss_pred ------------------------------------CCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCC
Confidence 6789999999999999998 999999999999999999999999
Q ss_pred CcEEEEe
Q 000085 2308 KQLIVFT 2314 (2342)
Q Consensus 2308 GsIrVWD 2314 (2342)
|.|+||+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=337.90 Aligned_cols=334 Identities=20% Similarity=0.269 Sum_probs=273.9
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
.++|..+++++.|+.+++|+... .....+..|. ..+.+++|+|+++.|++|+.|+.|++|+. +++.+..
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~~~-------~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~ 298 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQT 298 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECTTS-------CEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEeCCC-------CEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEE
Confidence 35778899999999999998432 1122233333 34567999999999999999999999996 4677888
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc-CC
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI-EG 2111 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i-~~ 2111 (2342)
+.+|...|++++|+|++++|++++.|++|++||...... .. ...+...+.+++++|++..++++..++. ..|+. ..
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~ 376 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 376 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EE-EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC
Confidence 999999999999999999999999999999999876432 22 3456778889999999999999988875 44654 34
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
.+..+.+|...|++++|+|+++++++++.|++|++||. +++.+..+.+|. +..++|+||+.+++.+..++.+++|+.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 57788999999999999999999999999999999995 678888888875 688999999999999999999999999
Q ss_pred CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC----------CCCccccccccccccCCCC
Q 000085 2190 NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK----------QSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2190 nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~----------~~~~iaFspd~~~s~ss~~ 2259 (2342)
++..+.. ...|...|++++|+|||++|++++.++. .++|+.... ....+.|+++.... .
T Consensus 456 ~~~~~~~-~~~~~~~v~~~~~spd~~~las~~~d~~------i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l----~ 524 (577)
T 2ymu_A 456 NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKT------VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI----A 524 (577)
T ss_dssp TSCEEEE-EECCSSCEEEEEECTTSCEEEEEETTSE------EEEEETTSCEEEEEECCSSCEEEEEECTTSSCE----E
T ss_pred CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCE------EEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE----E
Confidence 8866554 3459999999999999999999998776 344543221 12334566554322 2
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+..|+.|++||. +++++.++. +|...|++++|+|||++|++++.||+|++||
T Consensus 525 s~~~dg~v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 525 SASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECcCEEEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 2346999999996 788899998 9999999999999999999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=341.62 Aligned_cols=311 Identities=14% Similarity=0.057 Sum_probs=256.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc-ccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT-GTI 2078 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t-~~~ 2078 (2342)
.+++|+|||++|++++ +++|+||++.+++....+.+|.+.|++++|+|||++|+||+.|++|+|||+.++..... ...
T Consensus 22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~ 100 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100 (611)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE
T ss_pred eEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec
Confidence 3489999999999987 67999999999999999999999999999999999999999999999999976443222 234
Q ss_pred CCCCCCccccccCCCCCceeecCCC-----ccccccCCceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADK-----SRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~-----s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTG 2152 (2342)
.+...+.+++|+|+|+.+++++.+. +..|+.......+.+|...|++++|+|++. .+++|+.|++|++||..++
T Consensus 101 ~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~ 180 (611)
T 1nr0_A 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180 (611)
T ss_dssp CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 5778899999999999998877542 456887778888999999999999999986 6999999999999999999
Q ss_pred eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecC------CCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2153 RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKL------PLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2153 klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~------~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+++.++.+|. +..++|+|||.+++.+..++.+++|++. +..+..... .|.+.|.+++|+|+|++|++|+.|
T Consensus 181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D 260 (611)
T 1nr0_A 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence 9999999885 7899999999999999999999999975 444433322 599999999999999999999988
Q ss_pred CCCCCCCcccccccCCCCCCc-cccc----c---ccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGT-EDFD----L---ASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~-iaFs----p---d~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
+. .++|++....... +... . ..............|+.|++||..++++...+. +|...|++++|+
T Consensus 261 ~~------v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~-gh~~~v~~l~~s 333 (611)
T 1nr0_A 261 KT------IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY-GHNKAITALSSS 333 (611)
T ss_dssp SE------EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC-CCSSCEEEEEEC
T ss_pred Ce------EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc-CCCCCEEEEEEe
Confidence 77 5677765432110 0000 0 000011112223469999999999999888877 999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2296 KDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2296 PDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|||++|++++.||+|++||....
T Consensus 334 pdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 334 ADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999999997654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.8e-31 Score=320.59 Aligned_cols=279 Identities=16% Similarity=0.151 Sum_probs=216.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCccccccc-c-eeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPR-A-LAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~-s-ls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~ 2032 (2342)
++|+.+++++ |.++|+|++...........+. . ..........+.+++|+|++ .|++|+.||+|+|||+.+++.+.
T Consensus 40 ~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~ 117 (344)
T 4gqb_B 40 SDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI 117 (344)
T ss_dssp TTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE
T ss_pred CCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee
Confidence 4667777766 5678888643200000000000 0 00000111246779999986 57788999999999999987654
Q ss_pred e----cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2033 T----ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2033 t----L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
. +.+|.+.|++++|+|+|++|+||+.|++|++||+.++
T Consensus 118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-------------------------------------- 159 (344)
T 4gqb_B 118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-------------------------------------- 159 (344)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------------------------------
T ss_pred EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------------------------------
Confidence 4 4589999999999999999999999999999999875
Q ss_pred cCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEec----CCcEEEEEecC-CcEEEEEeCCC
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVG----VDAHAVSLSSE-GVIMTWNKLQH 2182 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~g----h~vssLSfSpD-G~IlVwdssdG 2182 (2342)
.++..+.+|.+.|++++|++++ .++++|+.||+|++||+++++.+..+.. +.+..++++|+ +.+++.+..++
T Consensus 160 --~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 160 --VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp --EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred --cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 2355678999999999999987 5789999999999999999998887643 24678999985 57888899999
Q ss_pred eEEEEEeCCceeeeecCCCCCCeEEEEEccCC-CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2183 TLSSFTLNGVLVARAKLPLSGSIGCMEISLDG-HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2183 sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG-k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
.|++|++...........|...|++++|+|+| ++|++|+.
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~--------------------------------------- 278 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE--------------------------------------- 278 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET---------------------------------------
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC---------------------------------------
Confidence 99999997544444445699999999999998 57888873
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT-NLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~-~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++|+|||+.+++++ .+. +|...|++++|+|++. .|++|+.||+|++|+++..
T Consensus 279 --D~~i~vwd~~~~~~~-~~~-~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 279 --DCSLAVLDSSLSELF-RSQ-AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp --TSCEEEECTTCCEEE-EEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred --CCeEEEEECCCCcEE-EEc-CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 678999999999865 455 8999999999999986 5678999999999997654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=312.10 Aligned_cols=275 Identities=15% Similarity=0.177 Sum_probs=240.1
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc----
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS---- 2073 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i---- 2073 (2342)
.+.+++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|+|.+|++|+.|+++++|++......
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence 4667999999999999999999999999999999999999999999999999999999999999999998753211
Q ss_pred -cccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEE
Q 000085 2074 -RTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSS--DLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2074 -~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSP--Dg~lLaSGS~DGtIrIW 2147 (2342)
......|...+.++.|++++..+++++.|+. ..|++ ...+..+.+|...|.+++|+| ++.++++|+.||+|++|
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 1113457788899999999999999988875 45765 456788999999999999987 47899999999999999
Q ss_pred ECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEEeCC
Q 000085 2148 SIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
|+++++++..+.+|. +..++|+|+|..++.+..++.+++|++........... +...+.+++|+|+|.++++|+.
T Consensus 226 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~- 304 (354)
T 2pbi_B 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN- 304 (354)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC-
Confidence 999999999998875 78999999999999999999999999975432222221 4457999999999999999973
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
|+.|++||+.+++.+..+. +|...|++++|+|||++|++
T Consensus 305 ----------------------------------------d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~s 343 (354)
T 2pbi_B 305 ----------------------------------------DYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCS 343 (354)
T ss_dssp ----------------------------------------TSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEE
T ss_pred ----------------------------------------CCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEE
Confidence 6779999999999999888 99999999999999999999
Q ss_pred EeCCCcEEEEe
Q 000085 2304 STADKQLIVFT 2314 (2342)
Q Consensus 2304 GSsDGsIrVWD 2314 (2342)
|+.||+|+||+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=326.74 Aligned_cols=356 Identities=20% Similarity=0.274 Sum_probs=282.4
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
.+++..+++++.|+.+++|+... .....+..|.. .+.+++|+|++++|++|+.|+.|++||. +++.+..
T Consensus 189 ~~~~~~l~~~~~d~~v~~w~~~~-------~~~~~~~~~~~---~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~ 257 (577)
T 2ymu_A 189 SPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 257 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTTS-------CEEEEEECCSS---CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEE
T ss_pred cCCCCEEEEEcCCCEEEEEeCCC-------cEEEEEecCCC---CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence 45788899999999999998432 11223333443 4566999999999999999999999996 4678888
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC-C
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE-G 2111 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~-~ 2111 (2342)
+.+|...|++++|+|+++.|++++.|++|++||.... ... ....+...+..++++|++..++++..++. ..|+.. .
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~-~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~ 335 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 335 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEE-EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 9999999999999999999999999999999997542 222 23567788999999999999999888875 457653 4
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
.+..+.+|...|++++|+|++.++++|+.||+|++||. +++.+..+.+|. +..++|+|||+.++.+..++.+++|+.
T Consensus 336 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 56788999999999999999999999999999999995 778888888765 788999999999999999999999998
Q ss_pred CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC----------CCCccccccccccccCCCC
Q 000085 2190 NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK----------QSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2190 nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~----------~~~~iaFspd~~~s~ss~~ 2259 (2342)
++..+.. ...|...|++++|+||++++++++.++. ..+|+.... ....+.|+++.....
T Consensus 415 ~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~------v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~la---- 483 (577)
T 2ymu_A 415 NGQLLQT-LTGHSSSVWGVAFSPDDQTIASASDDKT------VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA---- 483 (577)
T ss_dssp TCCEEEE-EECCSSCEEEEEECTTSSEEEEEETTSE------EEEEETTSCEEEEEECCSSCEEEEEECTTSCEEE----
T ss_pred CCCEEEE-ecCCCCCeEEEEECCCCCEEEEEcCCCE------EEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEE----
Confidence 8766543 3459999999999999999999998776 344543321 122335555543222
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCChhhh----hhhhhccccCCC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALSLKVV----DQMLKLGWEGDG 2335 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs~k~L----dQLLk~GWegDG 2335 (2342)
.+..|+.|++||. +++++..+. +|...|++++|+|||++|++++.||.|++||.++.....+ .......|.+||
T Consensus 484 s~~~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 484 SASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp EEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEeCCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC
Confidence 2336999999995 788889998 9999999999999999999999999999999643221111 122344577776
Q ss_pred c
Q 000085 2336 L 2336 (2342)
Q Consensus 2336 L 2336 (2342)
-
T Consensus 562 ~ 562 (577)
T 2ymu_A 562 Q 562 (577)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=308.65 Aligned_cols=315 Identities=15% Similarity=0.174 Sum_probs=252.4
Q ss_pred cCCC-eEEecCCCceEEEecC----CCCCCCccccccc--ceec----c---ccCcceeEEEEEcCCCCEEEEEEcCCcE
Q 000085 1955 QHGK-ASASPASGTFLRMFKG----PGGSGADEWHFPR--ALAF----A---SSGIRSSAVVSITHDKEIITGGHVDGSI 2020 (2342)
Q Consensus 1955 ~~Gk-~LaSsSsD~tIRVwdg----~tgs~~~ew~~p~--sls~----h---s~gI~Svt~VafSpDGklLASGS~DGsI 2020 (2342)
++|. .+++++.|+.+++|+. .++.. .|.... .+.. + ..+...+.+++|+|++++|++|+.||.|
T Consensus 55 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 132 (425)
T 1r5m_A 55 PLDESILAYGEKNSVARLARIVETDQEGKK--YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGEL 132 (425)
T ss_dssp SSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEecCCceEEEEEEecccCCccc--cccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeE
Confidence 4577 8899999999999997 55321 011110 1111 0 0123367789999999999999999999
Q ss_pred EEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC---------------Cc
Q 000085 2021 KLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG---------------MG 2085 (2342)
Q Consensus 2021 rVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~---------------V~ 2085 (2342)
++|| .+++.+..+.+|...|++++|+|++++|++++.|++|++||+.++........ +... +.
T Consensus 133 ~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (425)
T 1r5m_A 133 RLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL-KETGGSSINAENHSGDGSLGV 210 (425)
T ss_dssp EEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC-C---------------CCCBS
T ss_pred EEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec-cccCccceeeccccCCcceee
Confidence 9999 67788889999999999999999999999999999999999988765554421 2222 78
Q ss_pred cccccCCCCCceeecCCCcccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-
Q 000085 2086 TPGNSIGSSTPANASADKSRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD- 2162 (2342)
Q Consensus 2086 svs~SpDG~~Las~s~D~s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~- 2162 (2342)
++.+++++..++.+....+..|+. ...+..+.+|...|++++|+|++.++++++.||.|++||+++++.+..+..|.
T Consensus 211 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 290 (425)
T 1r5m_A 211 DVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ 290 (425)
T ss_dssp CCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS
T ss_pred EEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc
Confidence 888888876444444444455654 45677888999999999999999999999999999999999999888887654
Q ss_pred -cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC
Q 000085 2163 -AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ 2241 (2342)
Q Consensus 2163 -vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~ 2241 (2342)
+..++++++| .++.+..++.+++|++...........|...|.+++|+|+|+++++|+.
T Consensus 291 ~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------------------- 350 (425)
T 1r5m_A 291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM------------------- 350 (425)
T ss_dssp CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET-------------------
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC-------------------
Confidence 7899999999 8888889999999999755554445568899999999999999999873
Q ss_pred CCccccccccccccCCCCccCCCCeEEEEECCCCe--------------------EEEEEecCCCC--CeEEEEEecCCC
Q 000085 2242 SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK--------------------VFHVLKLGEGQ--DITALALNKDNT 2299 (2342)
Q Consensus 2242 ~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk--------------------~L~tL~lgHs~--~ItsLafSPDG~ 2299 (2342)
||.|++||+.+++ ++..+. +|.. .|++++|+|+++
T Consensus 351 ----------------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 351 ----------------------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp ----------------------TSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEEEECTTSS
T ss_pred ----------------------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEEEccCCCc
Confidence 5668888888777 888888 7765 999999999999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 000085 2300 NLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~ 2316 (2342)
+|++++.||.|++|+++
T Consensus 408 ~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 408 KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEESSSCCEEEECC
T ss_pred eEEEEecCceEEEEeec
Confidence 99999999999999965
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=312.11 Aligned_cols=280 Identities=15% Similarity=0.175 Sum_probs=235.6
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc-----
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT----- 2072 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~----- 2072 (2342)
.|.+++|+|++++|++|+.||+|+|||+.+++....+.+|...|.+++|+|+|++|++|+.|++|++||+.+...
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~ 147 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM 147 (380)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc
Confidence 456799999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred -ccccccCCCCCCccccccCCC-CCceeecCCCc-cccccC--CceEEe-----cCCCCCeEEEEEec-CCCEEEEEeCC
Q 000085 2073 -SRTGTIEPSSGMGTPGNSIGS-STPANASADKS-RRRRIE--GPIHVL-----RGHHREILCCCVSS-DLGVVVSCSDS 2141 (2342)
Q Consensus 2073 -i~t~~~~~~~~V~svs~SpDG-~~Las~s~D~s-~~~~i~--~~l~~L-----~GHs~~Vt~VafSP-Dg~lLaSGS~D 2141 (2342)
......+|...+..+.+.|++ ..+++++.|+. ..|++. ..+..+ .+|...|.+++|++ ++.++++|+.|
T Consensus 148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence 112245677888899999875 45788888765 457664 344444 68999999999987 78999999999
Q ss_pred CcEEEEECC-CCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc-eeeeecCC------CCCCeEEEEEc
Q 000085 2142 SDLLLHSIR-RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV-LVARAKLP------LSGSIGCMEIS 2211 (2342)
Q Consensus 2142 GtIrIWDLr-TGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~-~L~s~~~~------Hs~~ItsLafS 2211 (2342)
|+|++||++ ++..++.+.+|. +..++|+|+|..++.+..++.+++|++... .+...... +...|++++|+
T Consensus 228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307 (380)
T ss_dssp SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence 999999998 567888888875 789999999999999999999999999743 33322211 22358999999
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe---cCCCCC
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK---LGEGQD 2288 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~---lgHs~~ 2288 (2342)
|+|+++++|+. ||.|++||+.+++.+..+. .+|...
T Consensus 308 ~~g~~l~~g~~-----------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 346 (380)
T 3iz6_a 308 ISGRLLFAGYS-----------------------------------------NGDCYVWDTLLAEMVLNLGTLQNSHEGR 346 (380)
T ss_dssp SSSSEEEEECT-----------------------------------------TSCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred CCCCEEEEEEC-----------------------------------------CCCEEEEECCCCceEEEEecccCCCCCc
Confidence 99999999862 6789999999999888772 379999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2289 ITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2289 ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++++|+|||.+|++|+.||+|++|+..+.
T Consensus 347 v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 347 ISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999999997654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=305.65 Aligned_cols=280 Identities=15% Similarity=0.171 Sum_probs=224.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~ 2032 (2342)
++|+.+++++.|++|++|+..++ .+.. ......++...+.+++|+|+|++|++|+.|++|+||++.++ +++.
T Consensus 26 p~g~~las~~~D~~i~iw~~~~~----~~~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (345)
T 3fm0_A 26 PAGTLLASCGGDRRIRIWGTEGD----SWIC--KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT 99 (345)
T ss_dssp TTSSCEEEEETTSCEEEEEEETT----EEEE--EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEE
T ss_pred CCCCEEEEEcCCCeEEEEEcCCC----ccee--eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEE
Confidence 46788999999999999986542 1110 11111234456777999999999999999999999998876 4577
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
++.+|.+.|++++|+|++++|+||+.|++|++||+..+.. ...
T Consensus 100 ~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-------------------------------------~~~ 142 (345)
T 3fm0_A 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-------------------------------------YEC 142 (345)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-------------------------------------EEE
T ss_pred EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-------------------------------------eEE
Confidence 8999999999999999999999999999999999976421 023
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--LIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--lIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
+..+.+|...|++++|+|++.++++|+.||+|++||++++. +..++.+|. +..++|+|+|.+++.+..++.|++|+
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 45678899999999999999999999999999999998886 456777775 78999999999999999999999998
Q ss_pred eC--Cc--------------eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccc
Q 000085 2189 LN--GV--------------LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASD 2252 (2342)
Q Consensus 2189 ln--G~--------------~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~ 2252 (2342)
.. +. .+......|...|++++|++++..+++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~------------------------------ 272 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG------------------------------ 272 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET------------------------------
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC------------------------------
Confidence 62 10 111111228889999999999999999873
Q ss_pred cccCCCCccCCCCeEEEEECCCCe--------EEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC
Q 000085 2253 QSVDNNRFDFPSPSICFLDLHTLK--------VFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2253 ~s~ss~~ias~DGsIrIWDL~Tgk--------~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+.|++|+..... .......+|...|++++|+|++ .+|++|+.||+|++|+....
T Consensus 273 -----------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 273 -----------DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp -----------TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred -----------CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 5668888876532 2222333899999999999998 59999999999999997655
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=301.29 Aligned_cols=275 Identities=11% Similarity=0.061 Sum_probs=236.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.+.+++|+|++++|++|+.||+|+|||+.+++.+..+.+|..+|.+++|+|++++|++|+.|++|++||+.++.....+
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~- 93 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF- 93 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE-
Confidence 3566999999999999999999999999999999999999999999999999999999999999999999988665543
Q ss_pred cCCCCCCccccccCCCCCceeecCCCc-cccccCC---ceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG---PIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~---~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
..|...+.+++++|++..+++++.|+. ..|+... ....+.+|...|++++|+| ++.++++|+.||+|++||++++
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 567888999999999999999998876 4576543 3567889999999999999 6789999999999999999988
Q ss_pred eEEEEEec-C--CcEEEEEec--CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2153 RLIRRLVG-V--DAHAVSLSS--EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2153 klIrsL~g-h--~vssLSfSp--DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
.....+.. + .+..+++++ ++.+++.+..++.|++|++...........|...|.+++|+|++.+|++|+.
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~----- 248 (304)
T 2ynn_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE----- 248 (304)
T ss_dssp SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET-----
T ss_pred CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC-----
Confidence 76666543 2 367778876 7889999999999999999865555555669999999999999999999973
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC--EEEEEe
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT--NLLVST 2305 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~--~LaSGS 2305 (2342)
||+|++||+.+++++.++. .|...+.+++|+|++. ++++|+
T Consensus 249 ------------------------------------Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 249 ------------------------------------DGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp ------------------------------------TSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCEEEEE
T ss_pred ------------------------------------CCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCceEEEEec
Confidence 6789999999999999998 8888999999999885 466655
Q ss_pred CCCcEEEEeCC
Q 000085 2306 ADKQLIVFTDP 2316 (2342)
Q Consensus 2306 sDGsIrVWDi~ 2316 (2342)
|..+.+|++.
T Consensus 292 -~~g~~~~~~~ 301 (304)
T 2ynn_A 292 -DNGFTVLSLG 301 (304)
T ss_dssp -TTEEEEEECC
T ss_pred -CCceEEEEec
Confidence 5557777743
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=314.65 Aligned_cols=278 Identities=16% Similarity=0.176 Sum_probs=222.7
Q ss_pred ceeEEEEEcCCCCEEEEEEc------CCcEEEEecCCcccce----ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 1997 RSSAVVSITHDKEIITGGHV------DGSIKLLTSDGAKTLE----TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~------DGsIrVWDl~tgkll~----tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
..+.+++|+|||++|++|+. |++|++|+..++.... ...+|...|++++|+|++. +++++.||+|+|||
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd 121 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWE 121 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEee
Confidence 45677999999999999995 7889999988765433 3457999999999999975 56788999999999
Q ss_pred ccCCcccccc---ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCC-EEEEEe
Q 000085 2067 IHRAFTSRTG---TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLG-VVVSCS 2139 (2342)
Q Consensus 2067 l~tg~~i~t~---~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS 2139 (2342)
+.++...... ...|...|.+++++|+++.+++++.++. ..|+. ...+..+.+|...|++++|++++. ++++++
T Consensus 122 ~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~ 201 (357)
T 4g56_B 122 ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201 (357)
T ss_dssp -------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE
T ss_pred ccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec
Confidence 9887654332 3467788999999999999999988875 45665 456788899999999999999875 789999
Q ss_pred CCCcEEEEECCCCeEEEEEec--C--CcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVG--V--DAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~g--h--~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG 2214 (2342)
.||+|++||+++++.+..+.. + .+..++|+|++ .+++.+..++.|++|++...........|...|++++|+|++
T Consensus 202 ~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 202 EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS 281 (357)
T ss_dssp TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS
T ss_pred cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC
Confidence 999999999999987766543 2 36789999975 678888899999999997544444455699999999999987
Q ss_pred -CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEE
Q 000085 2215 -HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2215 -k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLa 2293 (2342)
++|++|+. |++|+|||+.+++++..+ +|...|++|+
T Consensus 282 ~~~lasgs~-----------------------------------------D~~i~iwd~~~~~~~~~~--~H~~~V~~va 318 (357)
T 4g56_B 282 SPFLASISE-----------------------------------------DCTVAVLDADFSEVFRDL--SHRDFVTGVA 318 (357)
T ss_dssp SCCEEEEET-----------------------------------------TSCEEEECTTSCEEEEEC--CCSSCEEEEE
T ss_pred CCEEEEEeC-----------------------------------------CCEEEEEECCCCcEeEEC--CCCCCEEEEE
Confidence 57888863 678999999999987654 6999999999
Q ss_pred Eec-CCCEEEEEeCCCcEEEEeCCCC
Q 000085 2294 LNK-DNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2294 fSP-DG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+| |+.+|++|+.||+|++|+++..
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 998 8999999999999999997653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=299.84 Aligned_cols=271 Identities=14% Similarity=0.187 Sum_probs=226.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccc-cccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWH-FPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~-~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+..+++++.|+++++|+..+... ... ....+..| ...+.+++|+|+|++|++|+.|++|+|||+.+++.+..+.
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~~--~~~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~ 104 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDDQ--KFGVPVRSFKGH---SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV 104 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEETT--EEEEEEEEEECC---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ccEEEEecCCccEEEecCCCCCc--cccccceEEeCC---cccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc
Confidence 36789999999999998543111 011 11223333 4456679999999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
+|.+.|.+++|+|++.+|+||+.|++|++||+... .+..
T Consensus 105 ~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-----------------------------------------~~~~ 143 (319)
T 3frx_A 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-----------------------------------------CLAT 143 (319)
T ss_dssp CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-----------------------------------------EEEE
T ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------eEEE
Confidence 99999999999999999999999999999998641 2445
Q ss_pred ecCCCCCeEEEEEecC------CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2116 LRGHHREILCCCVSSD------LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPD------g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
+.+|...|.+++|+|. +..+++|+.|++|++||+++++....+.+|. +..++++|+|.+++.+..++.|++|
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iw 223 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 6789999999999985 4589999999999999999999999998875 7889999999999999999999999
Q ss_pred EeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2188 TLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2188 dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
++......... .+...|.+++|+|+|.++++++ ++.+
T Consensus 224 d~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~------------------------------------------~~~i 260 (319)
T 3frx_A 224 NLAAKKAMYTL-SAQDEVFSLAFSPNRYWLAAAT------------------------------------------ATGI 260 (319)
T ss_dssp ETTTTEEEEEE-ECCSCEEEEEECSSSSEEEEEE------------------------------------------TTEE
T ss_pred ECCCCcEEEEe-cCCCcEEEEEEcCCCCEEEEEc------------------------------------------CCCc
Confidence 99754433322 2567899999999999999885 3458
Q ss_pred EEEECCCCeEEEEEec-------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2268 CFLDLHTLKVFHVLKL-------GEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~l-------gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
++|++.....+..+.. .|...+.+++|+|||++|++|+.||.|+||++.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 261 KVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 9999988877776642 245679999999999999999999999999954
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=301.42 Aligned_cols=277 Identities=14% Similarity=0.156 Sum_probs=219.1
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCccccc-ccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHF-PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~-p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++..+++++.|++|++|+............ ...+..| ...+.+++|+|++.++++|+.|++|++||+.+++.+..+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h---~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 114 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH---NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF 114 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC---SSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 678899999999999998654221111111 1123333 345677999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.+|.+.|++++|+|++++|++|+.|++|++||+...... . ..
T Consensus 115 ~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~-------------------------------------~~ 156 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-S-------------------------------------SA 156 (343)
T ss_dssp ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-E-------------------------------------CC
T ss_pred cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-e-------------------------------------ee
Confidence 999999999999999999999999999999998642100 0 00
Q ss_pred EecCCCCCeEEEEEecCC----------CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCC
Q 000085 2115 VLRGHHREILCCCVSSDL----------GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQH 2182 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg----------~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdG 2182 (2342)
...+|...|.+++|+|++ .++++++.||+|++|| .+++....+.+|. +..++|+|+|.+++.+..++
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg 235 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTC
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCC
Confidence 123688899999999886 7899999999999999 5677777887775 78899999999999999999
Q ss_pred eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2183 TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2183 sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
.|++|++...........+...|.+++|+|++.++++|+
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~----------------------------------------- 274 (343)
T 2xzm_R 236 KLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT----------------------------------------- 274 (343)
T ss_dssp EEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-----------------------------------------
T ss_pred eEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC-----------------------------------------
Confidence 999999842111111122566799999999999988664
Q ss_pred CCCeEEEEECCCCeEEE--EEe----------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2263 PSPSICFLDLHTLKVFH--VLK----------LGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~--tL~----------lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.|++||+.+++... .+. .+|...|++++|+|+|.+|++|+.||.|++|+..
T Consensus 275 -d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 275 -DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp -SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred -CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 4568888887665432 222 1577889999999999999999999999999954
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-29 Score=293.01 Aligned_cols=277 Identities=19% Similarity=0.195 Sum_probs=237.9
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++|+|++++|++|+.||.|++|++.+++....+.+|...|++++|+|++++|++|+.|++|++||+.++......
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999987655443
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..+...+.++.++|++..+++++.++. ..|+. ...+..+.+|...|.+++|+|++.++++|+.||.|++||+++++
T Consensus 104 -~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 104 -KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp -ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred -cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 456778899999999999999988875 45665 45678889999999999999999999999999999999999999
Q ss_pred EEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeE---EEEEccCCCEEEEEeCCCCCC
Q 000085 2154 LIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIG---CMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2154 lIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~It---sLafSPDGk~LaSGS~DGs~d 2227 (2342)
.+..+..+ .+..++++|+|.+++.+..++.+++|++...........|...+. .....+++.++++|+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~----- 257 (312)
T 4ery_A 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE----- 257 (312)
T ss_dssp EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCT-----
T ss_pred eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECC-----
Confidence 98887543 367899999999999999999999999975544444444554432 2333467888887752
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe--
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST-- 2305 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-- 2305 (2342)
||.|++||+.+++.+..+. +|...|.+++|+|++..|++++
T Consensus 258 ------------------------------------dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 258 ------------------------------------DNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIASAALE 300 (312)
T ss_dssp ------------------------------------TSCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSSSEEEEEECT
T ss_pred ------------------------------------CCEEEEEECCCchhhhhhh-ccCCcEEEEeecCcCCceEEEEcc
Confidence 7789999999999999998 9999999999999999999987
Q ss_pred CCCcEEEEeCC
Q 000085 2306 ADKQLIVFTDP 2316 (2342)
Q Consensus 2306 sDGsIrVWDi~ 2316 (2342)
.||.|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999843
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=297.63 Aligned_cols=275 Identities=13% Similarity=0.145 Sum_probs=211.7
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC-------cccc
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG-------AKTL 2031 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t-------gkll 2031 (2342)
.+++++.|+++++|+..++. ......+. ...+...+.+++|+|++++|++|+.|++|+|||+.. .+.+
T Consensus 26 ~las~~~D~~i~lw~~~~~~----~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD----FTLIDVLD-ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC----CEEEEEEC-TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEE
T ss_pred EEEEEcCCCEEEEEEecCCC----eEEEEEEe-cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeE
Confidence 78899999999999865421 11111110 111344567799999999999999999999999853 3456
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
..+.+|.+.|++++|+|+|++|+||+.|++|++||+..... ...
T Consensus 101 ~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~------------------------------------~~~ 144 (330)
T 2hes_X 101 AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE------------------------------------EYE 144 (330)
T ss_dssp EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC------------------------------------CCE
T ss_pred EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC------------------------------------CeE
Confidence 77899999999999999999999999999999999954210 012
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eEEEEEecCC--cEEEEEecC--CcEEEEEeCCCeEE
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG--RLIRRLVGVD--AHAVSLSSE--GVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG--klIrsL~gh~--vssLSfSpD--G~IlVwdssdGsI~ 2185 (2342)
.+..+.+|...|++++|+|++.+|++|+.||+|++||+.++ +++..+.+|. +..++|+|+ +..++.+..++.|+
T Consensus 145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence 34567899999999999999999999999999999999877 6788888875 788999998 67888999999999
Q ss_pred EEEeCCc--------eeeeecC-CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2186 SFTLNGV--------LVARAKL-PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2186 I~dlnG~--------~L~s~~~-~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
+|++.+. ....... .|...|++++|++++ ++++|+.
T Consensus 225 iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~---------------------------------- 269 (330)
T 2hes_X 225 VWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA---------------------------------- 269 (330)
T ss_dssp EEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET----------------------------------
T ss_pred EEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC----------------------------------
Confidence 9998642 1222222 389999999999766 6777762
Q ss_pred CCCccCCCCeEEEEECCCCe--EEEEEecCCCC-CeEEEEEec--CCCEEEEEeCCCcEEEEeCC
Q 000085 2257 NNRFDFPSPSICFLDLHTLK--VFHVLKLGEGQ-DITALALNK--DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~Tgk--~L~tL~lgHs~-~ItsLafSP--DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
||.|+|||..+++ .+.....+|.. .|++++|+| ++++|++|+.||.|++|+..
T Consensus 270 -------dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 270 -------DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp -------TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred -------CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 6789999998874 34444347876 899999999 78999999999999999954
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=288.50 Aligned_cols=275 Identities=11% Similarity=0.111 Sum_probs=234.6
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee---cc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET---AS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t---L~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
...+.+++|+|++++|++|+ ||.|++||+.+++.... +. +|...|++++|+|++++|++|+.|++|++||+.++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 34466799999999999998 99999999988764433 32 79999999999999999999999999999999986
Q ss_pred cccccc-ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2071 FTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2071 ~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
...... ...+...+.++.+++++..++++..++. ..|+. ......+.+|...|++++|+|++.++++++.||.|++
T Consensus 130 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 532222 4456677889999999999988887764 45665 3557788899999999999999999999999999999
Q ss_pred EECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2147 HSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
||+++++.+..+... .+..++++|+|..++.+..++.+++|++....... ...|...|.+++|+|+|+++++++.
T Consensus 210 ~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~--- 285 (337)
T 1gxr_A 210 WDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGK--- 285 (337)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEET---
T ss_pred EECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCCccceeEEEECCCCCEEEEecC---
Confidence 999999998887653 47899999999999999999999999997654432 3458999999999999999998862
Q ss_pred CCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2226 TNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2226 ~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS 2305 (2342)
||.|++||+.+++.+.... |...|++++|+|++++|++++
T Consensus 286 --------------------------------------dg~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 286 --------------------------------------DNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp --------------------------------------TSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEE
T ss_pred --------------------------------------CCcEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEEec
Confidence 6789999999999886554 888999999999999999999
Q ss_pred CCCcEEEEeC
Q 000085 2306 ADKQLIVFTD 2315 (2342)
Q Consensus 2306 sDGsIrVWDi 2315 (2342)
.||.|++|++
T Consensus 326 ~dg~i~iw~~ 335 (337)
T 1gxr_A 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999994
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=291.38 Aligned_cols=289 Identities=12% Similarity=0.090 Sum_probs=241.9
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++|+|++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.++......
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999987765554
Q ss_pred ccCCCCCCccccccCCCCCceeecCC-----C-ccccccC-------------CceEEecCCCC--CeEEEEEecCCCEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASAD-----K-SRRRRIE-------------GPIHVLRGHHR--EILCCCVSSDLGVV 2135 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D-----~-s~~~~i~-------------~~l~~L~GHs~--~Vt~VafSPDg~lL 2135 (2342)
. +...+..+.++|++..++++..+ + +..|+.. .....+.+|.. .+.+++|+|+++++
T Consensus 113 ~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (369)
T 3zwl_B 113 K--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190 (369)
T ss_dssp E--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEE
T ss_pred e--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEE
Confidence 3 66788999999999999888765 3 3334431 24556677777 99999999999999
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEc
Q 000085 2136 VSCSDSSDLLLHSIRR-GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrT-GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafS 2211 (2342)
++++.||.|++||+++ +..+..+..|. +..++|+++|.+++.+..++.+++|++.. ..+.... +...+.+++|+
T Consensus 191 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~ 268 (369)
T 3zwl_B 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVIT 268 (369)
T ss_dssp EEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEec
Confidence 9999999999999999 78888888764 78899999999999999999999999974 3333332 78899999999
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA 2291 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its 2291 (2342)
|+++++++++.++....+. ... ......+++||..+++.+..+. +|...|++
T Consensus 269 ~~~~~l~~~~~~~~~~~~~------~~~---------------------~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~ 320 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTT------TSA---------------------NEGKFEARFYHKIFEEEIGRVQ-GHFGPLNT 320 (369)
T ss_dssp SSSSEEEEEECCC----------------------------------------CEEEEEETTTCCEEEEEE-CCSSCEEE
T ss_pred CCCceEEEeecCCCceEEE------Eec---------------------CCCcceeEEEecCCCcchhhee-cccCcEEE
Confidence 9999999998655421111 000 0013479999999999999998 89999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2292 LALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2292 LafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
++|+|++++|++|+.||.|++|+...
T Consensus 321 ~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 321 VAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEECH
T ss_pred EEECCCCCEEEEEcCCCeEEEEECcc
Confidence 99999999999999999999999653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=301.90 Aligned_cols=280 Identities=16% Similarity=0.214 Sum_probs=226.0
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccc-------cceec--cccCcceeEEEEEcCCCCEEEEEEcCCcEEEEe
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFP-------RALAF--ASSGIRSSAVVSITHDKEIITGGHVDGSIKLLT 2024 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p-------~sls~--hs~gI~Svt~VafSpDGklLASGS~DGsIrVWD 2024 (2342)
-++|+.+++++ ++++++|+..++......... ..+.. ...+...+.+++|+|+|++|++|+.|++|+|||
T Consensus 73 spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd 151 (393)
T 1erj_A 73 SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 151 (393)
T ss_dssp CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 46788888876 578999997664321111000 00000 001112367899999999999999999999999
Q ss_pred cCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc
Q 000085 2025 SDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS 2104 (2342)
Q Consensus 2025 l~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s 2104 (2342)
+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||+.++...
T Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~------------------------------- 200 (393)
T 1erj_A 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------------------------------- 200 (393)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-------------------------------
T ss_pred CCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE-------------------------------
Confidence 9999999999999999999999999999999999999999999875321
Q ss_pred cccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEE-------ecC--CcEEEEEecCCcE
Q 000085 2105 RRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRL-------VGV--DAHAVSLSSEGVI 2174 (2342)
Q Consensus 2105 ~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL-------~gh--~vssLSfSpDG~I 2174 (2342)
..+ .|...+.+++|+| ++.++++|+.||+|++||++++..+..+ .+| .+..++|+++|..
T Consensus 201 ---------~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~ 270 (393)
T 1erj_A 201 ---------LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270 (393)
T ss_dssp ---------EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred ---------EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE
Confidence 112 2456799999999 8999999999999999999999988877 334 3789999999999
Q ss_pred EEEEeCCCeEEEEEeCCce------------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC
Q 000085 2175 MTWNKLQHTLSSFTLNGVL------------VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS 2242 (2342)
Q Consensus 2175 lVwdssdGsI~I~dlnG~~------------L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~ 2242 (2342)
++.+..++.|++|++.... ......+|...|.+++|++++.+|++|+.
T Consensus 271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-------------------- 330 (393)
T 1erj_A 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-------------------- 330 (393)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET--------------------
T ss_pred EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC--------------------
Confidence 9999999999999985311 12223458999999999999999999973
Q ss_pred CccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec------CCCEEEEEeCCCcEEEEeCC
Q 000085 2243 GTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK------DNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2243 ~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP------DG~~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.|++||+.+++++..+. +|...|.+++|++ ++.+|++|+.||+|+||+..
T Consensus 331 ---------------------D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 331 ---------------------DRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp ---------------------TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ---------------------CCeEEEEECCCCeEEEEEC-CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 7789999999999999998 9999999999986 68899999999999999954
Q ss_pred C
Q 000085 2317 A 2317 (2342)
Q Consensus 2317 s 2317 (2342)
.
T Consensus 389 ~ 389 (393)
T 1erj_A 389 K 389 (393)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-28 Score=286.53 Aligned_cols=284 Identities=19% Similarity=0.203 Sum_probs=233.1
Q ss_pred ceeccccCcceeEEEEEcCC-CCEEEEEEcCCcEEEEecCCcc-----cceecccCCCCeEEEEecCCCCEEEEEeCCCc
Q 000085 1988 ALAFASSGIRSSAVVSITHD-KEIITGGHVDGSIKLLTSDGAK-----TLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061 (2342)
Q Consensus 1988 sls~hs~gI~Svt~VafSpD-GklLASGS~DGsIrVWDl~tgk-----ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT 2061 (2342)
++.+|.+ .|++++|+|+ +++|++|+.|++|+|||+.+++ +..++.+|.+.|++++|+|++++|++|+.|+.
T Consensus 33 tL~GH~~---~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 33 TLKGHNG---WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EECCCSS---CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EECCccC---CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 3444544 4666999998 5799999999999999987654 45678999999999999999999999999999
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccCC---ceEEecCCCCCeEEEEEecC--CCEE
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG---PIHVLRGHHREILCCCVSSD--LGVV 2135 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~---~l~~L~GHs~~Vt~VafSPD--g~lL 2135 (2342)
|++|+......... .......+....+++++..++++..++. ..|+... ....+.+|...|.+++|+++ ..++
T Consensus 110 i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 110 LRLWDLTTGTTTRR-FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEETTTTEEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred ceEEeecccceeee-ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 99999988644333 2344555667778889999998888765 4465533 23456789999999999876 4578
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccC
Q 000085 2136 VSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLD 2213 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPD 2213 (2342)
++++.|++|++||+++++.+..+.+|. +..++|+|+|.+++.+..++.+++|++......... .+...|.++.|+|+
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~ 267 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDIINALCFSPN 267 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE-ECSSCEEEEEECSS
T ss_pred EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee-cCCceEEeeecCCC
Confidence 999999999999999999999998875 788999999999999999999999999754433222 25678999999999
Q ss_pred CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec--------CC
Q 000085 2214 GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL--------GE 2285 (2342)
Q Consensus 2214 Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l--------gH 2285 (2342)
+.+++++. |+.|++||+.++..+..+.. +|
T Consensus 268 ~~~~~~~~------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 268 RYWLCAAT------------------------------------------GPSIKIWDLEGKIIVDELKQEVISTSSKAE 305 (340)
T ss_dssp SSEEEEEE------------------------------------------TTEEEEEETTTTEEEEEECCC-------CC
T ss_pred CceeeccC------------------------------------------CCEEEEEECCCCeEEEeccccceeeeccCC
Confidence 88776553 67899999999887776542 57
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2286 GQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
...|++++|+|||++|++|+.||.|+||++.+.
T Consensus 306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 889999999999999999999999999996544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=316.42 Aligned_cols=275 Identities=20% Similarity=0.192 Sum_probs=224.5
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..+++++.|++|++|+......... .....+..|. ..+.+++|+|++++|++|+.||+|+|||+.+++.+..+.+
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~-~~~~~~~~h~---~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~ 470 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYG-VAQRRLTGHS---HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG 470 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSC-EEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccc-cccceecCCC---CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC
Confidence 46789999999999998654221100 0112333444 4566799999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
|.+.|++++|+|++++|+|||.|++|++||....... . .....
T Consensus 471 h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~------------------------------------~~~~~ 513 (694)
T 3dm0_A 471 HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-T------------------------------------ISEGG 513 (694)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-E------------------------------------ECSST
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-e------------------------------------eccCC
Confidence 9999999999999999999999999999997542110 0 00012
Q ss_pred cCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCC-
Q 000085 2117 RGHHREILCCCVSSDL--GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNG- 2191 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg--~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG- 2191 (2342)
.+|...|+|++|+|++ ..+++|+.||+|++||++++++...+.+|. +..++++|+|.+++.+..++.|++|++..
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 5789999999999986 689999999999999999999999998875 78999999999999999999999999964
Q ss_pred ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2192 VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2192 ~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
..+.. ..+...|.+++|+|++.++++++ ++.|+|||
T Consensus 594 ~~~~~--~~~~~~v~~~~~sp~~~~l~~~~------------------------------------------~~~i~iwd 629 (694)
T 3dm0_A 594 KKLYS--LEANSVIHALCFSPNRYWLCAAT------------------------------------------EHGIKIWD 629 (694)
T ss_dssp EEEEC--CBCSSCEEEEEECSSSSEEEEEE------------------------------------------TTEEEEEE
T ss_pred ceEEE--ecCCCcEEEEEEcCCCcEEEEEc------------------------------------------CCCEEEEE
Confidence 33332 23667899999999999998775 45699999
Q ss_pred CCCCeEEEEEecCC------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2272 LHTLKVFHVLKLGE------------------GQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2272 L~Tgk~L~tL~lgH------------------s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.+++.+..+...+ ...|++++|+|||++|++|+.||.|+||++.
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99998888775211 1237899999999999999999999999954
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=301.50 Aligned_cols=258 Identities=17% Similarity=0.221 Sum_probs=222.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
+++..+++++.|++|++|+..++.. ...+..|. ..+.+++|+|++++|++|+.|++|+|||+.+++++.++
T Consensus 118 p~~~~l~s~s~Dg~i~vwd~~~~~~------~~~l~~h~---~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 118 PVFSVMVSASEDATIKVWDYETGDF------ERTLKGHT---DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SSSSEEEEEESSSCEEEEETTTCCC------CEEECCCS---SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE------EEEEeccC---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 3567889999999999999766322 23344444 34667999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~ 2111 (2342)
.+|...|++++|+|++++|+||+.|++|++||+.++.+..++ ..+...+..+.+++++..+++++.|+. ..|+. ..
T Consensus 189 ~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267 (410)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999999999999999999999999999988765544 456778889999999999999988875 44665 45
Q ss_pred ceEEecCCCCCeEEEEEecC--------------------CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEe
Q 000085 2112 PIHVLRGHHREILCCCVSSD--------------------LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPD--------------------g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfS 2169 (2342)
....+.+|...|.+++|+|+ +.++++|+.||+|++||++++.++..+.+|. +..++|+
T Consensus 268 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 347 (410)
T 1vyh_C 268 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 347 (410)
T ss_dssp EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc
Confidence 67788999999999999996 6789999999999999999999999999876 6889999
Q ss_pred cCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2170 SEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2170 pDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
++|.+++.+..++.|++|++...........|...|++++|+|++.+|++|+.
T Consensus 348 ~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 348 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999754443444569999999999999999999973
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=295.85 Aligned_cols=273 Identities=15% Similarity=0.155 Sum_probs=226.9
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~ 2032 (2342)
.-++|+.+++++.|+.+++|+..++... ..+..+ ..+.+.++++++++|++|+.||.|++||+.+++...
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~------~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGS------KMLKRA----DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETT------TTSCSC----CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred eeecCCeEEEEEcCCcEEEEEeccccee------eEEecC----CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence 3467888999999999999997652211 111111 234456789999999999999999999999999999
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
.+.+|.+.|++++|+|++++|++|+.|++|++||+.++. .
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----------------------------------------~ 173 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS----------------------------------------N 173 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----------------------------------------C
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------------------------------------C
Confidence 999999999999999999999999999999999998742 3
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-----cE---------------------EE
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-----AH---------------------AV 2166 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-----vs---------------------sL 2166 (2342)
+..+.+|...|++++|+|++.++++|+.||+|++||+++++.+..+..+. +. .+
T Consensus 174 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence 34567899999999999999999999999999999999999999987531 23 34
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2167 SLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2167 SfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
+|+++|.+++.+..+|.+++|++.. ..+......|...|++++|+|++. ++++|+.
T Consensus 254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---------------------- 311 (420)
T 3vl1_A 254 EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE---------------------- 311 (420)
T ss_dssp CSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET----------------------
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC----------------------
Confidence 5578999999999999999999964 444444445889999999999999 9998862
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCe-EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
||.|++||+.+++ ++..+...|...|+++.+ +++.+|++++.||.|++|+...
T Consensus 312 -------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 312 -------------------NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp -------------------TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred -------------------CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 6889999999874 367777457888888855 5788999999999999999665
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=288.61 Aligned_cols=307 Identities=12% Similarity=0.073 Sum_probs=229.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.+.+++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|++++|+|++++|++|+.|++|++||+.++.....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 35569999999999999999999999999987 8888999999999999999999999999999999999988754333
Q ss_pred c-ccCCCCCCccccccCCCCCceeecCCCc-cccccCC------ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2076 G-TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG------PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2076 ~-~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~------~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
. ...+...+.++.+++++..++++..++. ..|+... ......+|...|++++|+|++.++++|+.||.|++|
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 169 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 169 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEE
Confidence 3 3556778999999999999999888765 4455432 123346789999999999999999999999999999
Q ss_pred EC------------------CCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEE
Q 000085 2148 SI------------------RRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGC 2207 (2342)
Q Consensus 2148 DL------------------rTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~Its 2207 (2342)
|+ .+++.+..+..|. +..++|+++|..++.+..++.+++|++...........|...|.+
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 249 (372)
T 1k8k_C 170 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 249 (372)
T ss_dssp ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEE
T ss_pred EcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEE
Confidence 95 4678888887664 789999999999999999999999999633333333458889999
Q ss_pred EEEccCCCEEEEEeCCCCCCCCCcccccccCC--CCCCccccccccccccCCCCccCCCCeEEEE---ECCCCeEE----
Q 000085 2208 MEISLDGHSALIGVNSSSTNNGSYDNIQGLNS--KQSGTEDFDLASDQSVDNNRFDFPSPSICFL---DLHTLKVF---- 2278 (2342)
Q Consensus 2208 LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~--~~~~~iaFspd~~~s~ss~~ias~DGsIrIW---DL~Tgk~L---- 2278 (2342)
++|+|+|.++++| .++. ..+|++.. ....... ..+.. ..........+.+| |. .++..
T Consensus 250 ~~~~~~~~~l~~~-~d~~------i~i~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 316 (372)
T 1k8k_C 250 VTFITESSLVAAG-HDCF------PVLFTYDSAAGKLSFGG-RLDVP----KQSSQRGLTARERFQNLDK-KASSEGSAA 316 (372)
T ss_dssp EEEEETTEEEEEE-TTSS------CEEEEEETTTTEEEECC-CCCCC------------CHHHHHHHCCC-CC-------
T ss_pred EEEecCCCEEEEE-eCCe------EEEEEccCcCceEEEee-ccCcc----ccchhhhcchhhhhhhccc-ccccccCcc
Confidence 9999999999887 4444 23444443 1000000 00000 00000001122233 21 11211
Q ss_pred --EEEecCCCCCeEEEEEe-cCC---CEEEEEeCCCcEEEEeCCC
Q 000085 2279 --HVLKLGEGQDITALALN-KDN---TNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2279 --~tL~lgHs~~ItsLafS-PDG---~~LaSGSsDGsIrVWDi~s 2317 (2342)
..+..+|...|++++|+ ++| .+|++|+.||.|++|++..
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 22333899999999976 676 9999999999999999543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=301.56 Aligned_cols=329 Identities=10% Similarity=0.115 Sum_probs=237.7
Q ss_pred CCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC----cccceecccCCC
Q 000085 1964 ASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG----AKTLETASGHCA 2039 (2342)
Q Consensus 1964 SsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t----gkll~tL~GHt~ 2039 (2342)
+.|+.+++|+..++.... .... .. +-..+.+++|+|++++|++|+.||.|++||+.+ .+.+..+.+|.+
T Consensus 42 ~~d~~v~iw~~~~~~~~~---~~~~-~~---~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~ 114 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEK---PIAS-LQ---VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS 114 (416)
T ss_dssp CCCCCCEEEESSSGGGCS---CSCC-CC---CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS
T ss_pred CCCCeEEEEEccCCCCCc---EEEE-Ee---cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc
Confidence 889999999976522110 0011 11 233467799999999999999999999999987 457888999999
Q ss_pred CeEEEEecCC-CCEEEEEeCCCceEEEeccCCc------ccccc--ccCCCCCCccccccCC-CCCceeecCCCc-cccc
Q 000085 2040 PVTCLALSSD-SNFLVTGSQDTTILLWRIHRAF------TSRTG--TIEPSSGMGTPGNSIG-SSTPANASADKS-RRRR 2108 (2342)
Q Consensus 2040 ~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~------~i~t~--~~~~~~~V~svs~SpD-G~~Las~s~D~s-~~~~ 2108 (2342)
.|++++|+|+ +++|++|+.|++|++||+.++. ..... ...+...+.+++++++ +..++++..++. ..|+
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 9999999998 8999999999999999999875 22222 3457778999999999 677788777764 5566
Q ss_pred cC--CceEEecCC------CCCeEEEEEecCC-CEEEEEeCCC---cEEEEECCCC-eEEEEEe-cCC--cEEEEEec-C
Q 000085 2109 IE--GPIHVLRGH------HREILCCCVSSDL-GVVVSCSDSS---DLLLHSIRRG-RLIRRLV-GVD--AHAVSLSS-E 2171 (2342)
Q Consensus 2109 i~--~~l~~L~GH------s~~Vt~VafSPDg-~lLaSGS~DG---tIrIWDLrTG-klIrsL~-gh~--vssLSfSp-D 2171 (2342)
.. ..+..+..| ...|++++|+|++ .++++++.|+ .|++||++++ ..+..+. +|. +..++|+| +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC
Confidence 53 455666665 7899999999997 6899999999 9999999986 5666776 554 78999999 9
Q ss_pred CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC-CEEEEEeCCCCCCCCCcccccccCCCCCCccccccc
Q 000085 2172 GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG-HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLA 2250 (2342)
Q Consensus 2172 G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG-k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd 2250 (2342)
+.+++.+..++.+++|++...........|...|++++|+|++ .++++++.|+. .++|++.........-.
T Consensus 275 ~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~------i~iw~~~~~~~~~~~~~-- 346 (416)
T 2pm9_A 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK------IEVQTLQNLTNTLDEQE-- 346 (416)
T ss_dssp SSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE------EEEEESCCCCCSSCC----
T ss_pred CCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc------EEEEEccCCCCCccccc--
Confidence 9999999999999999987544444444689999999999999 89998875444 33444433221100000
Q ss_pred cccccCCCCccCCCCeEEEEECCC----------CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2251 SDQSVDNNRFDFPSPSICFLDLHT----------LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2251 ~~~s~ss~~ias~DGsIrIWDL~T----------gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
... ........+|.... ... .....|..++++++|+|||++|++|+.||.|+||++.
T Consensus 347 -~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 347 -TET------KQQESETDFWNNVSREESKEKPSVFHL--QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp ---------------------------CCSCCCSSCC--CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred -ccc------cccCCcccccccccccccccccccccc--cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 000 00000001110000 000 0111367788899999999999999999999999954
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=285.32 Aligned_cols=280 Identities=10% Similarity=0.095 Sum_probs=229.0
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC----C---CEEEEEEcCCcEEEEecCCccc
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD----K---EIITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD----G---klLASGS~DGsIrVWDl~tgkl 2030 (2342)
..+++++.|+.|++|+..++.....+.....+..|. ..+.+++|+|+ + ++|++|+.||.|++||+.+++.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~ 103 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK---SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 103 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT---TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC---CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc
Confidence 578889999999999977643222222333333333 45677999999 9 9999999999999999999887
Q ss_pred -----ceecccC-----CCCeEEEEec----CCCCE-EEEEeCCCceEEEeccC------CccccccccCCCCCCccccc
Q 000085 2031 -----LETASGH-----CAPVTCLALS----SDSNF-LVTGSQDTTILLWRIHR------AFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2031 -----l~tL~GH-----t~~VtcLAfS----PDG~~-LaSGS~DGTVrVWDl~t------g~~i~t~~~~~~~~V~svs~ 2089 (2342)
...+.+| ...|++++|+ |++.+ |++|+.||+|++||+.+ +.... +
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~ 169 (397)
T 1sq9_A 104 TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN--------------W 169 (397)
T ss_dssp TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC--------------C
T ss_pred cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee--------------c
Confidence 8888889 5999999999 99999 99999999999999987 32111 0
Q ss_pred cCCCCCceeecCCCccccccCCceEEe-------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec--
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVL-------RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-- 2160 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L-------~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-- 2160 (2342)
.+...+ ..|...|++++|+|++ ++++|+.||.|++||+++++.+..+..
T Consensus 170 ---------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 227 (397)
T 1sq9_A 170 ---------------------SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH 227 (397)
T ss_dssp ---------------------CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred ---------------------cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccc
Confidence 011123 4588999999999999 999999999999999999999999987
Q ss_pred -C-----CcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCC-------------CCCCeEEEEEccCCCEEE
Q 000085 2161 -V-----DAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLP-------------LSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2161 -h-----~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~-------------Hs~~ItsLafSPDGk~La 2218 (2342)
| .+..++|+|+|.+++.+..+ +.|++|++........... |...|.+++|+|++++|+
T Consensus 228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred cccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 5 37899999999999999988 9999999864443333444 899999999999999999
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-----CC--------
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-----GE-------- 2285 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-----gH-------- 2285 (2342)
+|+. ||.|++||+.+++++..+.. +|
T Consensus 308 ~~~~-----------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 308 SAGW-----------------------------------------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp EEET-----------------------------------------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred EEeC-----------------------------------------CCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 9872 67899999999999998872 45
Q ss_pred -------CCCeEEEEEecCC----------CEEEEEeCCCcEEEEeCCC
Q 000085 2286 -------GQDITALALNKDN----------TNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2286 -------s~~ItsLafSPDG----------~~LaSGSsDGsIrVWDi~s 2317 (2342)
...|++++|+|++ .+|++|+.||.|++|+..+
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 8899999999998 7999999999999999654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=286.21 Aligned_cols=259 Identities=14% Similarity=0.155 Sum_probs=220.1
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.|+++|+|+..+... .....+..| ...+.+++|++++.++++|+.|++|++||+.+++.+..+.
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~----~~~~~l~gh---~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~ 119 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERL----DLQWSLEGH---QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID 119 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEE----EEEEEECCC---SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEECCCCCe----eeeeeeccC---CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe
Confidence 466889999999999998544111 111123333 3456679999999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~ 2112 (2342)
+|...|.+++|+|++++|++|+.|++|++|++.++...... ..+...+.+++++|+++.++++..++. ..|+. .+.
T Consensus 120 ~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~ 198 (321)
T 3ow8_A 120 AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198 (321)
T ss_dssp CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 99999999999999999999999999999999987654433 345567889999999999999988875 44665 456
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
+..+.+|...|++++|+|++.+|++|+.||+|++||++++..+..+.+|. +..++|+|+|..++.+..++.+++|++.
T Consensus 199 ~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 78899999999999999999999999999999999999999999998876 7889999999999999999999999998
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..........|...|++++|+|+|.+|++++.
T Consensus 279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 65555555679999999999999999999973
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=332.35 Aligned_cols=344 Identities=14% Similarity=0.100 Sum_probs=268.1
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcccc
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgkll 2031 (2342)
.++|+.+++++.|+++++|+..++.. ...+..| ...+.+++|+|+ +.++++|+.||.|++||+.+++++
T Consensus 666 s~~~~~l~s~~~d~~v~vwd~~~~~~------~~~~~~~---~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 736 (1249)
T 3sfz_A 666 SSDDSYIATCSADKKVKIWDSATGKL------VHTYDEH---SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736 (1249)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCE------EEEEECC---SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred ecCCCEEEEEeCCCeEEEEECCCCce------EEEEcCC---CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence 46788999999999999999776321 1222333 345667999995 459999999999999999999999
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-----------------------------------
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG----------------------------------- 2076 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~----------------------------------- 2076 (2342)
.++.+|.+.|++++|+|++++|++|+.||+|++||+.++......
T Consensus 737 ~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999999999999876432211
Q ss_pred -------------------ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCE
Q 000085 2077 -------------------TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGV 2134 (2342)
Q Consensus 2077 -------------------~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~l 2134 (2342)
...+...+.++.++|++..++++..++. ..|+. ...+..+.+|...|++++|+|++.+
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCE
Confidence 0134455666677777777777666654 33544 3456778899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeE---------------------------------------EEEEecCCcEEEEEecCCcEE
Q 000085 2135 VVSCSDSSDLLLHSIRRGRL---------------------------------------IRRLVGVDAHAVSLSSEGVIM 2175 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGkl---------------------------------------IrsL~gh~vssLSfSpDG~Il 2175 (2342)
+++++.||+|++||+.++.. ........+..++++|+|..+
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 99999999999999753100 001112246789999999999
Q ss_pred EEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC----------Ccc
Q 000085 2176 TWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS----------GTE 2245 (2342)
Q Consensus 2176 VwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~----------~~i 2245 (2342)
+.+..+|.+.+|++...........|...|++++|+|+|+++++|+.++. ..+|++..... ..+
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~------i~vwd~~~~~~~~~~~~~~~v~~~ 1050 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV------IQVWNWQTGDYVFLQAHQETVKDF 1050 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSB------EEEEETTTTEEECCBCCSSCEEEE
T ss_pred EEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCE------EEEEECCCCceEEEecCCCcEEEE
Confidence 99999999999999765555555569999999999999999999998776 45566554321 111
Q ss_pred ccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2246 DFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2246 aFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.+.++.. ......|+.|++||+.+++.+..+. +|...|++++|+|++++|++++.||+|++|+....
T Consensus 1051 ~~~~~~~-----l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1051 RLLQDSR-----LLSWSFDGTVKVWNVITGRIERDFT-CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp EECSSSE-----EEEEESSSEEEEEETTTTCCCEEEE-CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred EEcCCCc-----EEEEECCCcEEEEECCCCceeEEEc-ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence 2222211 1223369999999999999999998 89999999999999999999999999999997654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=301.93 Aligned_cols=292 Identities=12% Similarity=0.088 Sum_probs=224.8
Q ss_pred ceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcccc--eecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTL--ETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll--~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..|+|++|+| ++++||+|+.||+|+|||+.+++.. ..+.+|.+.|++|+|+| ++++|+|||.||+|++||+.+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 3477899999 5679999999999999999877543 45678999999999998 689999999999999999987533
Q ss_pred cccc-ccCCCCCCccccccCCCCCceeecCCCc-cccccC-CceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEE
Q 000085 2073 SRTG-TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE-GPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2073 i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~-~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWD 2148 (2342)
.... .......+.++.+++++..++++..++. ..|+.. +.+..+.+|...|++++|+|++. ++++|+.||+|++||
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEe
Confidence 2211 2233445778899999999999988875 456653 45678899999999999999876 788999999999999
Q ss_pred CCCCeEEEEE---ecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCC------CCeEEEEEccCCCEE
Q 000085 2149 IRRGRLIRRL---VGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLS------GSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2149 LrTGklIrsL---~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs------~~ItsLafSPDGk~L 2217 (2342)
+++++....+ .+| .+..++|+|+|..++.+..++.|++|++...........|. ..+....|+|++.++
T Consensus 280 ~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
T 4e54_B 280 LRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359 (435)
T ss_dssp TTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred cccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEE
Confidence 9987654333 234 37889999999999999999999999986433222222222 234456889999988
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE-EEec
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL-ALNK 2296 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL-afSP 2296 (2342)
++++.+.... .......++.|++||..+++.+..+..+|...|.++ +|+|
T Consensus 360 ~~~~~~d~~~-----------------------------~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp 410 (435)
T 4e54_B 360 VVGRYPDPNF-----------------------------KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCTTS-----------------------------CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred EEEEcCCCCe-----------------------------EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence 8875321100 000112367899999999999999876888899988 6999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 000085 2297 DNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2297 DG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+|.+|++|+ |+.|+||+....
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999998876 889999996654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-27 Score=277.10 Aligned_cols=241 Identities=11% Similarity=0.075 Sum_probs=198.5
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCC--cccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDG--AKTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~t--gkll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|+|++|++|+.|++|+|||+.+ ++.+.++.+|.+.|++++|+++ +++|+|||.|++|+|||+.++..
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence 3466799999999999999999999999974 4678899999999999999864 89999999999999999976421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLr 2150 (2342)
..+..+.+|...|++++|+|+ +.++++|+.||+|++||++
T Consensus 90 --------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 90 --------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp --------------------------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred --------------------------------------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 123456789999999999997 8999999999999999998
Q ss_pred CCeE--EEEEecCC--cEEEEEecC-------------CcEEEEEeCCCeEEEEEeCCce----eeeecCCCCCCeEEEE
Q 000085 2151 RGRL--IRRLVGVD--AHAVSLSSE-------------GVIMTWNKLQHTLSSFTLNGVL----VARAKLPLSGSIGCME 2209 (2342)
Q Consensus 2151 TGkl--IrsL~gh~--vssLSfSpD-------------G~IlVwdssdGsI~I~dlnG~~----L~s~~~~Hs~~ItsLa 2209 (2342)
++.. ...+.+|. +..++|+|+ +.+++.+..++.|++|++.... +......|...|.+++
T Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~ 211 (297)
T 2pm7_B 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (297)
T ss_dssp SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence 7632 34556664 788999987 5689999999999999986422 3333456999999999
Q ss_pred EccCC---CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe---EEEEEe-
Q 000085 2210 ISLDG---HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK---VFHVLK- 2282 (2342)
Q Consensus 2210 fSPDG---k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk---~L~tL~- 2282 (2342)
|+|++ .+|++|+. |++|+|||+.+.. ....+.
T Consensus 212 ~sp~~~~~~~las~s~-----------------------------------------D~~v~iWd~~~~~~~~~~~~~~~ 250 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQ-----------------------------------------DRTCIIWTQDNEQGPWKKTLLKE 250 (297)
T ss_dssp ECCCCSSSEEEEEEET-----------------------------------------TSCEEEEEESSTTSCCEEEESSS
T ss_pred ECCCCCCceEEEEEEC-----------------------------------------CCcEEEEEeCCCCCccceeeeec
Confidence 99995 88998873 6779999987642 112221
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
..|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 251 ~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 251 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 2678899999999999999999999999999954
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-27 Score=283.50 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=201.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc---eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL---ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll---~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+.+++|+|+|++|++|+.|++|+|||+.++... ....+|.+.|++++|+|+|++|++|+.|++|++||+..+..
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-- 95 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-- 95 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E--
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe--
Confidence 3567999999999999999999999999887533 23468999999999999999999999999999999876311
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-- 2152 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-- 2152 (2342)
..+..+.+|...|++++|+|++++|++|+.||+|++||++++
T Consensus 96 ------------------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 96 ------------------------------------ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp ------------------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred ------------------------------------EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 234567899999999999999999999999999999999876
Q ss_pred -eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCce--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2153 -RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2153 -klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
.++..+.+|. +..++|+|+|.+++.+..++.+++|+..... ......+|...|++++|+|+|++|++|+.|+.
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-- 217 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-- 217 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--
T ss_pred eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe--
Confidence 3456676664 7889999999999999999999999987542 22334459999999999999999999986544
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC---------------CCeEEEEEecCCCCCeEEE
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH---------------TLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~---------------Tgk~L~tL~lgHs~~ItsL 2292 (2342)
|+|||.. ..+++.++...|...|.++
T Consensus 218 ---------------------------------------v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 258 (345)
T 3fm0_A 218 ---------------------------------------VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI 258 (345)
T ss_dssp ---------------------------------------EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEE
T ss_pred ---------------------------------------EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEE
Confidence 5555431 2245666664588999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2293 ALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+|+|++..|++++.|+.|++|+...
T Consensus 259 ~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 259 AWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EECTTTCCEEEEETTSCEEEEEECT
T ss_pred EEecCCCEEEEEeCCCeEEEEEeCC
Confidence 9999999999999999999999653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=270.54 Aligned_cols=272 Identities=13% Similarity=0.124 Sum_probs=231.2
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
..+.+++| +++++|++|+.||.|++||+.+++....+..|...|++++|+|++++|++|+.|+.|++|++.........
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 34566899 99999999999999999999999999999999999999999999999999999999999999875322221
Q ss_pred --ccCCCCCCccccccCCCCCceeecCCCc-cccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 000085 2077 --TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2077 --~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
...+...+.++.+ ++..++++..++. ..|+.......+.+|...|.+++|++ ++.++++++.||.|++|| .+
T Consensus 98 ~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~ 173 (313)
T 3odt_A 98 YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--ND 173 (313)
T ss_dssp CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TT
T ss_pred cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cC
Confidence 3456677777777 5778888877765 55887778889999999999999998 899999999999999999 56
Q ss_pred eEEEEEec-C--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2153 RLIRRLVG-V--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2153 klIrsL~g-h--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
+.+..+.. + .+..+++++++. ++.+..++.+++|++...........|...|++++|+|+|. +++|+.
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~------- 244 (313)
T 3odt_A 174 KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGE------- 244 (313)
T ss_dssp EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEET-------
T ss_pred ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEec-------
Confidence 67777765 3 378999999999 77888999999999975444444456999999999999994 666652
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQ 2309 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGs 2309 (2342)
||.|++||+.+++.+..+. .|...|++++|+|+++ +++++.||.
T Consensus 245 ----------------------------------dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~ 288 (313)
T 3odt_A 245 ----------------------------------DRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNL 288 (313)
T ss_dssp ----------------------------------TSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred ----------------------------------CCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC-EEEEeCCCc
Confidence 7889999999999999998 8889999999999998 678999999
Q ss_pred EEEEeCCCC
Q 000085 2310 LIVFTDPAL 2318 (2342)
Q Consensus 2310 IrVWDi~sL 2318 (2342)
|++|+....
T Consensus 289 i~iw~~~~~ 297 (313)
T 3odt_A 289 VRIFSQEKS 297 (313)
T ss_dssp EEEEESCGG
T ss_pred EEEEeCCCC
Confidence 999996544
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-27 Score=273.71 Aligned_cols=273 Identities=14% Similarity=0.158 Sum_probs=217.5
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
++|+||+++ +||+|. |++|+|||+.++++++.+. +|...|+|++|+|++++|+||+.|++|++||+.+++.....
T Consensus 29 ~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~- 105 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM- 105 (318)
T ss_dssp BCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred eEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-
Confidence 459999886 777775 9999999999999887664 67889999999999999999999999999999998766554
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccc-ccc---CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRR-RRI---EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i---~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
..+...+ ..+++++..++++..++... +.. ...+..+.+|...+.++.+++++.++++++.||+|++||+++++
T Consensus 106 ~~h~~~~--~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARV--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCE--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceE--EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 2333333 34556677888887776543 222 34567788999999999999999999999999999999998865
Q ss_pred EE----EEEecC--CcEEEEEecCCcEEE---EEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2154 LI----RRLVGV--DAHAVSLSSEGVIMT---WNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2154 lI----rsL~gh--~vssLSfSpDG~IlV---wdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
.. .....+ .+..+++++++..++ .+..++.+++|+......... ..+...+..+.|++++..+++++.
T Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg-- 260 (318)
T 4ggc_A 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHG-- 260 (318)
T ss_dssp TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEEC--
T ss_pred ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEE--
Confidence 32 222222 367788888765333 345668899999875433322 237788999999999999998751
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
. .|+.|+|||+.+++++.++. +|.+.|++++|+|||++|+||
T Consensus 261 ~-------------------------------------~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 261 F-------------------------------------AQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp T-------------------------------------TTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEE
T ss_pred c-------------------------------------CCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEE
Confidence 1 27889999999999999999 999999999999999999999
Q ss_pred eCCCcEEEEeCCCC
Q 000085 2305 TADKQLIVFTDPAL 2318 (2342)
Q Consensus 2305 SsDGsIrVWDi~sL 2318 (2342)
+.||+|+|||+..+
T Consensus 303 s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 303 AADETLRLWRCFEL 316 (318)
T ss_dssp ETTTEEEEECCSCC
T ss_pred ecCCeEEEEECCCC
Confidence 99999999996543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=282.35 Aligned_cols=257 Identities=15% Similarity=0.170 Sum_probs=215.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc----c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK----T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk----l 2030 (2342)
++++.+++++.|+++++|+..++.. ...+..|. ..+.+++|+|++++|++|+.|+.|++|++.++. .
T Consensus 65 ~d~~~l~s~s~Dg~v~iWd~~~~~~------~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 65 TDSRLLLSASQDGKLIIWDSYTTNK------VHAIPLRS---SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCE------EEEEECSS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCc------ceEeecCC---ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 4577899999999999999765321 12223333 345679999999999999999999999998753 4
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI 2109 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i 2109 (2342)
...+.+|.+.|+|+.|++++ .+++|+.|++|++||+.++.....+ ..|...+.+++++|++..+++++.|+. ..|+.
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp EEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 56788999999999999876 4899999999999999987655443 467788999999999999999988875 45765
Q ss_pred --CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEEeCCCe
Q 000085 2110 --EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2110 --~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwdssdGs 2183 (2342)
......+.+|...|++++|+|++.++++|+.||+|++||+++++.+..+..+ .+..++|+|+|.+++.+..++.
T Consensus 214 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe
Confidence 4567889999999999999999999999999999999999999988887643 3789999999999999999999
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+++|++..........+|...|++++|+|+|.+|++|+.
T Consensus 294 i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC
Confidence 999998654444444569999999999999999999974
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=276.60 Aligned_cols=235 Identities=17% Similarity=0.273 Sum_probs=203.5
Q ss_pred eeEEEEEcCCC-CEEEEEEcCCcEEEEecCC-----cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 1998 SSAVVSITHDK-EIITGGHVDGSIKLLTSDG-----AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1998 Svt~VafSpDG-klLASGS~DGsIrVWDl~t-----gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
.+.+++|+|++ ++|++|+.|++|++|++.+ +..+..+.+|...|++++|+|++++|+||+.|++|++||+.++.
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~ 98 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 45669999976 7999999999999999864 34567889999999999999999999999999999999998752
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.+..+.+|...|.+++|+|++.++++|+.||+|++||++
T Consensus 99 ----------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~- 137 (319)
T 3frx_A 99 ----------------------------------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK- 137 (319)
T ss_dssp ----------------------------------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-
T ss_pred ----------------------------------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Confidence 345678999999999999999999999999999999996
Q ss_pred CeEEEEEecCC--cEEEEEecC------CcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2152 GRLIRRLVGVD--AHAVSLSSE------GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfSpD------G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+.++..+.+|. +..++++|. +..++.+..++.+++|++...........|...|++++|+|+|++|++|+.
T Consensus 138 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~- 216 (319)
T 3frx_A 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK- 216 (319)
T ss_dssp SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET-
T ss_pred CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 56777887775 677888874 458888999999999999876666566679999999999999999999973
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
||.|++||+.+++++..+. +...|.+++|+|++.+|++
T Consensus 217 ----------------------------------------dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~ 254 (319)
T 3frx_A 217 ----------------------------------------DGEIMLWNLAAKKAMYTLS--AQDEVFSLAFSPNRYWLAA 254 (319)
T ss_dssp ----------------------------------------TCEEEEEETTTTEEEEEEE--CCSCEEEEEECSSSSEEEE
T ss_pred ----------------------------------------CCeEEEEECCCCcEEEEec--CCCcEEEEEEcCCCCEEEE
Confidence 7889999999999999887 4568999999999999988
Q ss_pred EeCCCcEEEEeCCC
Q 000085 2304 STADKQLIVFTDPA 2317 (2342)
Q Consensus 2304 GSsDGsIrVWDi~s 2317 (2342)
++.+ .+++|+...
T Consensus 255 ~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 255 ATAT-GIKVFSLDP 267 (319)
T ss_dssp EETT-EEEEEEETT
T ss_pred EcCC-CcEEEEeCc
Confidence 8755 599999653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-27 Score=277.64 Aligned_cols=282 Identities=12% Similarity=0.123 Sum_probs=224.4
Q ss_pred cceeEEEEEcCCCC-EEEEEEc---CCcEEEEecCCcccceec-ccCCCCeEEEEecCC---CCEEEEEeCCCceEEEec
Q 000085 1996 IRSSAVVSITHDKE-IITGGHV---DGSIKLLTSDGAKTLETA-SGHCAPVTCLALSSD---SNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1996 I~Svt~VafSpDGk-lLASGS~---DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSPD---G~~LaSGS~DGTVrVWDl 2067 (2342)
...+.+++|+|++. ++++|+. ||.|+|||+.+++..... .+|.+.|++++|+|+ +.+|++|+.|++|++||+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 34566799999996 6667776 999999999998765443 479999999999998 699999999999999999
Q ss_pred cCCccccccccCCCCCCccc------cccCCCCCceeecCCCc-cccccCC---ceEEecCCCC----CeEEEE----Ee
Q 000085 2068 HRAFTSRTGTIEPSSGMGTP------GNSIGSSTPANASADKS-RRRRIEG---PIHVLRGHHR----EILCCC----VS 2129 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~sv------s~SpDG~~Las~s~D~s-~~~~i~~---~l~~L~GHs~----~Vt~Va----fS 2129 (2342)
.++.........+...+.++ ++++++..++++..++. ..|+... ++..+..|.+ .|++++ |+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence 98762222345667777777 67889999999988865 5566532 5677766655 899998 67
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCcEEEEEec---CCcEEEEEeCCCeEEEEEeCCceeeeec-----CC
Q 000085 2130 SDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSS---EGVIMTWNKLQHTLSSFTLNGVLVARAK-----LP 2200 (2342)
Q Consensus 2130 PDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~vssLSfSp---DG~IlVwdssdGsI~I~dlnG~~L~s~~-----~~ 2200 (2342)
+++.++++|+.||.|++||+++++....... ..+..++|+| ++..++.+..++.+++|++......... ..
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 8999999999999999999999988665543 3488999999 9999999999999999998643322111 25
Q ss_pred CCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC----
Q 000085 2201 LSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL---- 2275 (2342)
Q Consensus 2201 Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg---- 2275 (2342)
|...|++++|+|++. ++++|+. ||.|++||+.++
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~-----------------------------------------dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGG-----------------------------------------AGGLHLWKYEYPIQRS 296 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEET-----------------------------------------TSEEEEEEEECCSCC-
T ss_pred CcCCEEEEEECCCCCcEEEEEeC-----------------------------------------CCcEEEeecCCCcccc
Confidence 999999999999999 7888863 566777777543
Q ss_pred ---------------eEEEEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCC
Q 000085 2276 ---------------KVFHVLKLGEGQDITALALNKDNTNLL-VSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2276 ---------------k~L~tL~lgHs~~ItsLafSPDG~~La-SGSsDGsIrVWDi~sLs 2319 (2342)
+.+..+. +|...|++++|+|++++|+ +|+.||.|++|++..++
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 297 KKDSEGIEMGVAGSVSLLQNVT-LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp -CCTTSCCCCCCCEEEEEEEEE-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cccCCCCccccccccceeeccc-cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 4667777 8999999999999999998 89999999999977653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=285.13 Aligned_cols=238 Identities=18% Similarity=0.277 Sum_probs=202.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC------------------CeEEEEecCCCCEEEEEeCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA------------------PVTCLALSSDSNFLVTGSQD 2059 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~------------------~VtcLAfSPDG~~LaSGS~D 2059 (2342)
.+.+++|+|||++|++|+ |++++||++.+++.+..+.+|.. .|++++|+|+|++|++|+.|
T Consensus 66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d 144 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 144 (393)
T ss_dssp CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence 456799999999999987 78999999999988887766542 49999999999999999999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
++|+|||+.++. .+..+.+|...|++++|+|++.++++|+
T Consensus 145 ~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 145 RLIRIWDIENRK----------------------------------------IVMILQGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp SCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CeEEEEECCCCc----------------------------------------EEEEEccCCCCEEEEEEcCCCCEEEEec
Confidence 999999998742 3456789999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEecC-CcEEEEEec-CCcEEEEEeCCCeEEEEEeCCc-eeeeec------CCCCCCeEEEEE
Q 000085 2140 DSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSS-EGVIMTWNKLQHTLSSFTLNGV-LVARAK------LPLSGSIGCMEI 2210 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL~gh-~vssLSfSp-DG~IlVwdssdGsI~I~dlnG~-~L~s~~------~~Hs~~ItsLaf 2210 (2342)
.||+|++||++++++...+..+ .+..++++| +|.+++.+..++.+++|++... .+.... ..|...|++++|
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 9999999999999998888754 478899999 8999999999999999998643 332221 358999999999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC------------CeEE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT------------LKVF 2278 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T------------gk~L 2278 (2342)
+|+|++|++|+. |+.|++||+.+ +.+.
T Consensus 265 ~~~g~~l~s~s~-----------------------------------------d~~v~~wd~~~~~~~~~~~~~~~~~~~ 303 (393)
T 1erj_A 265 TRDGQSVVSGSL-----------------------------------------DRSVKLWNLQNANNKSDSKTPNSGTCE 303 (393)
T ss_dssp CTTSSEEEEEET-----------------------------------------TSEEEEEEC---------------CEE
T ss_pred CCCCCEEEEEeC-----------------------------------------CCEEEEEECCCCCCcccccCCCCCcce
Confidence 999999999973 67788998865 3345
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2279 HVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2279 ~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
..+. +|...|.+++|+|++.+|++|+.||.|++||....
T Consensus 304 ~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 304 VTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 5666 89999999999999999999999999999997654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=279.82 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=214.8
Q ss_pred ceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCcccceecc--cCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETAS--GHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL~--GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|++ ++|++|+.||.|+|||+.+++....+. +|.+.|++++|+| ++++|++|+.|++|++||+.+..
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~- 152 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV- 152 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-
Confidence 346679999999 899999999999999999888776665 7999999999999 78999999999999999998521
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.. ......+|...|++++|+|++.++++|+.||.|++||+ ++
T Consensus 153 ~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~ 194 (383)
T 3ei3_B 153 IQ-------------------------------------VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DG 194 (383)
T ss_dssp EE-------------------------------------EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TS
T ss_pred eE-------------------------------------EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CC
Confidence 10 11112346688999999999999999999999999999 67
Q ss_pred eEEEEEecCC--cEEEEEecCCc-EEEEEeCCCeEEEEEeCC-----ceeeeecCCCCCCeEEEEEcc-CCCEEEEEeCC
Q 000085 2153 RLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQHTLSSFTLNG-----VLVARAKLPLSGSIGCMEISL-DGHSALIGVNS 2223 (2342)
Q Consensus 2153 klIrsL~gh~--vssLSfSpDG~-IlVwdssdGsI~I~dlnG-----~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~D 2223 (2342)
+.+..+..|. +..++|+|++. +++.+..++.+++|++.. ..+... .|...|++++|+| +|.++++++.+
T Consensus 195 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d 272 (383)
T 3ei3_B 195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQR 272 (383)
T ss_dssp CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESS
T ss_pred CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCC
Confidence 8888888765 78999999999 899999999999999973 233322 5999999999999 99999999987
Q ss_pred CCCCCCCcccccccCCCCCCc----------------------------cccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGT----------------------------EDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~----------------------------iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
+. ..+|++....... ..|+++... .+..|+.|+|||+.++
T Consensus 273 ~~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~------s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 273 NE------IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL------LLNDKRTIDIYDANSG 340 (383)
T ss_dssp SE------EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT------CTTCCCCEEEEETTTC
T ss_pred Cc------EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc------ccCCCCeEEEEecCCC
Confidence 76 4455554322100 112222211 3347999999999999
Q ss_pred eEEEEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2276 KVFHVLKLG-EGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2276 k~L~tL~lg-Hs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++..+... |...+.+++|+|++++|++|+ ||.|++|++.
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 999999832 567788889999999999997 9999999964
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=287.04 Aligned_cols=279 Identities=12% Similarity=0.096 Sum_probs=234.3
Q ss_pred eeEEEEEcCCCC-EEEEE----------EcCCcEEEEecCCcc---cceecccCCCCeEEEEecCCCCEEEEEeCCCceE
Q 000085 1998 SSAVVSITHDKE-IITGG----------HVDGSIKLLTSDGAK---TLETASGHCAPVTCLALSSDSNFLVTGSQDTTIL 2063 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASG----------S~DGsIrVWDl~tgk---ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVr 2063 (2342)
.+.+++|+|+|+ +|++| +.|+.|+|||+.++. .+..+ .|...|++++|+|++++|++|+.|++|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 355689999997 99999 899999999999875 33333 5899999999999999999999999999
Q ss_pred EEeccCC---ccccccccCCCCCCccccccCC-CCCceeecCCCc-cccccCCce-----------EEecCCCCCeEEEE
Q 000085 2064 LWRIHRA---FTSRTGTIEPSSGMGTPGNSIG-SSTPANASADKS-RRRRIEGPI-----------HVLRGHHREILCCC 2127 (2342)
Q Consensus 2064 VWDl~tg---~~i~t~~~~~~~~V~svs~SpD-G~~Las~s~D~s-~~~~i~~~l-----------~~L~GHs~~Vt~Va 2127 (2342)
+||+.+. .........+...+.++.++|+ +..++++..++. ..|+..... ..+.+|...|++++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 9999872 2122224567888999999998 788888887764 556654321 23467999999999
Q ss_pred EecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecC--------CcEEEEEecCC-cEEEEEeCCC---eEEEEEeCCc-e
Q 000085 2128 VSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--------DAHAVSLSSEG-VIMTWNKLQH---TLSSFTLNGV-L 2193 (2342)
Q Consensus 2128 fSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh--------~vssLSfSpDG-~IlVwdssdG---sI~I~dlnG~-~ 2193 (2342)
|+|+ +.++++++.||.|++||+++++.+..+..+ .+..++|+|+| .+++.+..++ .|++|++... .
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~ 252 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC
Confidence 9999 789999999999999999999999988764 37899999998 6888888888 9999999753 3
Q ss_pred eeeecC-CCCCCeEEEEEcc-CCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2194 VARAKL-PLSGSIGCMEISL-DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2194 L~s~~~-~Hs~~ItsLafSP-DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
...... .|...|++++|+| ++.++++|+. |+.|++||
T Consensus 253 ~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-----------------------------------------dg~v~~wd 291 (416)
T 2pm9_A 253 PLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-----------------------------------------DNTVLLWN 291 (416)
T ss_dssp CSBCCCSCCSSCEEEEEECSSCSSCEEEEES-----------------------------------------SSEEEEEC
T ss_pred CcEEeecCccCceeEEEeCCCCCCeEEEEeC-----------------------------------------CCCEEEee
Confidence 333334 6999999999999 9999999873 67899999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCC
Q 000085 2272 LHTLKVFHVLKLGEGQDITALALNKDN-TNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2272 L~Tgk~L~tL~lgHs~~ItsLafSPDG-~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
+.+++++..+. +|...|++++|+|++ .+|++++.||.|++|++....
T Consensus 292 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 292 PESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CCCCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 99999999998 899999999999999 899999999999999976654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=307.96 Aligned_cols=298 Identities=12% Similarity=0.034 Sum_probs=208.7
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC------CCEEEEEEcCCcEEEEecCCc
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD------KEIITGGHVDGSIKLLTSDGA 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD------GklLASGS~DGsIrVWDl~tg 2028 (2342)
+++..+++++.|++|++|+..++... ......+..+.+ .+..++|+|+ +.+||+|+.||+|+|||+.++
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~--~~~~~~l~~~~~---~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLH--CVKVQTIVHSFG---EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp -----------CEEEEEEEEETTTCC--EEEEEEEEECCC---SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred hhhhhhccCCCCceEEEEEccCCCCC--ceEEEEEEecCC---cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 45677899999999999986542211 111112233333 3566999997 579999999999999999876
Q ss_pred cc-----------ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCce
Q 000085 2029 KT-----------LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2029 kl-----------l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~La 2097 (2342)
.. ..++.+|...|+|++|+++ ..|++|+.||+|++||+.++.
T Consensus 246 ~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~-------------------------- 298 (524)
T 2j04_B 246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE-------------------------- 298 (524)
T ss_dssp SSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS--------------------------
T ss_pred ccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC--------------------------
Confidence 42 2367899999999999986 489999999999999998631
Q ss_pred eecCCCccccccCCceEEecCCCCCeEEE--EEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCC----cEEEEEec
Q 000085 2098 NASADKSRRRRIEGPIHVLRGHHREILCC--CVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----AHAVSLSS 2170 (2342)
Q Consensus 2098 s~s~D~s~~~~i~~~l~~L~GHs~~Vt~V--afSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~gh~----vssLSfSp 2170 (2342)
.+...+.+|...|++| +|++++ .+|+|||.||+|+|||+++++++..+.+|. +..++|+|
T Consensus 299 -------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 299 -------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp -------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred -------------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 1234578899999999 567887 899999999999999999988766665542 57899999
Q ss_pred CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC--------
Q 000085 2171 EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS-------- 2242 (2342)
Q Consensus 2171 DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~-------- 2242 (2342)
+|..++.+..++.+++|++..........+|.+.|++|+|+|+|++|++|+.|+.. ++|+......
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv------~lwd~~~~~~~~~~~~~~ 439 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSL------IITNAARRLLHGIKNSSA 439 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEE------ECCBSCSSTTTCC-----
T ss_pred CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEE------EEEechHhhccccccCcc
Confidence 99999999999999999987433222334599999999999999999999988883 4454332110
Q ss_pred -------CccccccccccccCCCCccCCCCeEEEEE------CC-CCeEEEEEecCCCCCeEEEEEecCC---CEEEEEe
Q 000085 2243 -------GTEDFDLASDQSVDNNRFDFPSPSICFLD------LH-TLKVFHVLKLGEGQDITALALNKDN---TNLLVST 2305 (2342)
Q Consensus 2243 -------~~iaFspd~~~s~ss~~ias~DGsIrIWD------L~-Tgk~L~tL~lgHs~~ItsLafSPDG---~~LaSGS 2305 (2342)
..+.|+++ .+.+++|| .. ++.++.++. +|...|.+|+|+|++ .+|++|+
T Consensus 440 ~~~~~~v~~v~~sp~-------------g~~~~~~~~~~~~~~~~~g~~~~~l~-gh~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 440 TQKSLRLWKWDYSIK-------------DDKYRIDSSYEVYPLTVNDVSKAKID-AHGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp -CCCCEEEECBCCSS-------------SCEEEECCCCCCCC--------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred ceeeeEEEEeccCCC-------------CCeEEccCCceecccccCCcceeeec-CCCceEEEEECCCCCCccHHHHhhc
Confidence 01122222 12345544 22 466677777 899999999999996 4999999
Q ss_pred CCCcEEEEeCCC
Q 000085 2306 ADKQLIVFTDPA 2317 (2342)
Q Consensus 2306 sDGsIrVWDi~s 2317 (2342)
.||.|+||++..
T Consensus 506 ~~g~vrlw~l~~ 517 (524)
T 2j04_B 506 SAGLLTLEYLSL 517 (524)
T ss_dssp TTSEEEEEECSC
T ss_pred cCceEEEEEccc
Confidence 999999999543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-28 Score=290.88 Aligned_cols=310 Identities=15% Similarity=0.091 Sum_probs=216.8
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc-ccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF-TSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~-~i~ 2074 (2342)
.+.+++|+|+|++|++|+.|+.|+|||+.++ +.+..+.+|.+.|++++|+|++++|++|+.|++|++||+.++. ...
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 3456999999999999999999999999988 7888999999999999999999999999999999999999875 111
Q ss_pred -ccccCCCCCCccccccCCCCCceeecCCCc-cccccCC-----ceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2075 -TGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG-----PIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2075 -t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~-----~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
.....+...+.++.++|++..++++..++. ..|+... ....+.+ |...|++++|+|++.++++|+.||+|++
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i 172 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence 114567888999999999999999988865 4566532 3677777 9999999999999999999999999999
Q ss_pred EECC------------------CCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCcee----eeecCCCC
Q 000085 2147 HSIR------------------RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV----ARAKLPLS 2202 (2342)
Q Consensus 2147 WDLr------------------TGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L----~s~~~~Hs 2202 (2342)
||++ .++++..+ +|. +..++|+|+|.+++.+..++.|++|++..... ......|.
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 251 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ 251 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC
Confidence 9985 35566666 554 78999999999999999999999999975433 33334589
Q ss_pred CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcc-cccccccccc-----------C-CCCccC--CCCeE
Q 000085 2203 GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTE-DFDLASDQSV-----------D-NNRFDF--PSPSI 2267 (2342)
Q Consensus 2203 ~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i-aFspd~~~s~-----------s-s~~ias--~DGsI 2267 (2342)
..|.+++|+|+|++|++|+.++. .+|.......... .......... . .....+ .....
T Consensus 252 ~~v~~~~~s~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (377)
T 3dwl_C 252 LPLRSLLWANESAIVAAGYNYSP-------ILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF 324 (377)
T ss_dssp SCEEEEEEEETTEEEEEESSSSE-------EEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred CceEEEEEcCCCCEEEEEcCCcE-------EEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence 99999999999999999875443 1233321110000 0000000000 0 000000 00111
Q ss_pred EEEECCC-CeEEEEEecCCCCCeEEEEEecCC-C---EEEEEeCCCcEEEEeC
Q 000085 2268 CFLDLHT-LKVFHVLKLGEGQDITALALNKDN-T---NLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2268 rIWDL~T-gk~L~tL~lgHs~~ItsLafSPDG-~---~LaSGSsDGsIrVWDi 2315 (2342)
...+... ......+...|...|+++++.++. . .|+|||.||.|+|||+
T Consensus 325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1111110 001112233699999999976644 3 6999999999999983
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=298.08 Aligned_cols=306 Identities=15% Similarity=0.127 Sum_probs=237.9
Q ss_pred ceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCC---CeEEEEecCC-CCEEEEEeCCCceEEEeccCCc
Q 000085 1997 RSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCA---PVTCLALSSD-SNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1997 ~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~---~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
..+.+++|+|+++ ++++|+.|+.|++||+.+++.+..+.+|.+ .|++++|+|+ +++|++|+.|++|++||+.++.
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 3467799999998 899999999999999999999999999999 9999999999 9999999999999999999887
Q ss_pred ccccccc---CCCCCCccccccCCCCCceeecCCCc-cccccC--CceEEecCC----CCCeEEEEEecCCCEEEEEeCC
Q 000085 2072 TSRTGTI---EPSSGMGTPGNSIGSSTPANASADKS-RRRRIE--GPIHVLRGH----HREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2072 ~i~t~~~---~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~--~~l~~L~GH----s~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
....... .+...+..+.++ ++..++++..++. ..|+.. ..+..+..| ...+.++.|+ ++.++++++.|
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 318 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLD 318 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETT
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECC
Confidence 6666534 788889999999 9999998888764 556653 455666666 4678888886 89999999999
Q ss_pred CcEEEEECCCCeEEEEEecCC--cEEEEE------------------------------------------ecCC-----
Q 000085 2142 SDLLLHSIRRGRLIRRLVGVD--AHAVSL------------------------------------------SSEG----- 2172 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh~--vssLSf------------------------------------------SpDG----- 2172 (2342)
|.|++||+.+++.+..+.+|. +..+++ +.||
T Consensus 319 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~ 398 (615)
T 1pgu_A 319 GTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVN 398 (615)
T ss_dssp SCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEET
T ss_pred CCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEE
Confidence 999999999888877776542 111111 1122
Q ss_pred ----------------------------------------------------------cEEEEEeC-CCeEEEEEeCCce
Q 000085 2173 ----------------------------------------------------------VIMTWNKL-QHTLSSFTLNGVL 2193 (2342)
Q Consensus 2173 ----------------------------------------------------------~IlVwdss-dGsI~I~dlnG~~ 2193 (2342)
..++.+.. ++.+++|++.+..
T Consensus 399 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~ 478 (615)
T 1pgu_A 399 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE 478 (615)
T ss_dssp TEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE
T ss_pred EcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcc
Confidence 22233333 6777777776544
Q ss_pred ee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC------------CCCcccccc----------c
Q 000085 2194 VA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK------------QSGTEDFDL----------A 2250 (2342)
Q Consensus 2194 L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~------------~~~~iaFsp----------d 2250 (2342)
+. .....|...|++++|+|+|++|++|+.++. ..+|++... ....+.|++ +
T Consensus 479 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 479 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGK------ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552 (615)
T ss_dssp EEEECSSCCSSCEEEEEECTTSSEEEEEETTSC------EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred ccccccCCccCceEEEEECCCCCEEEEcCCCCe------EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccC
Confidence 43 334458999999999999999999998877 344554322 122335555 2
Q ss_pred cccccCCCCccCCCCeEEEEECCCC-eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2251 SDQSVDNNRFDFPSPSICFLDLHTL-KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2251 ~~~s~ss~~ias~DGsIrIWDL~Tg-k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
... ...+..||.|++||+.++ +++..+. +|...|++++|+|+++ |++++.||.|++|++.
T Consensus 553 ~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 553 EDL----VATGSLDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp CCE----EEEEETTSCEEEEESSCTTCCEEETT-SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred CCE----EEEEcCCCcEEEEECCCCceechhhh-cCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 221 122346999999999998 7777777 8999999999999999 9999999999999954
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=327.80 Aligned_cols=311 Identities=17% Similarity=0.180 Sum_probs=255.5
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
...+.+++|+|+|++|++|+.||+|+|||+.+++.+.++.+|.+.|++++|+|+|++|++|+.|++|+|||+.++.....
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999876555
Q ss_pred cccCCCCCCccccccCCC--CCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2076 GTIEPSSGMGTPGNSIGS--STPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG--~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
. ..+...+.++.|++++ ..+++++.++. ..|+. ......+.+|.+.|++++|+|++.++++|+.||+|++||++
T Consensus 695 ~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 695 Y-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773 (1249)
T ss_dssp E-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG
T ss_pred E-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC
Confidence 4 4677889999999954 45677777764 45665 45678889999999999999999999999999999999998
Q ss_pred CCeEEEEEe-------------------------------------------------------cC--CcEEEEEecCCc
Q 000085 2151 RGRLIRRLV-------------------------------------------------------GV--DAHAVSLSSEGV 2173 (2342)
Q Consensus 2151 TGklIrsL~-------------------------------------------------------gh--~vssLSfSpDG~ 2173 (2342)
+++....+. +| .+..++|+|+|.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 853 (1249)
T 3sfz_A 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 853 (1249)
T ss_dssp GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT
T ss_pred CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC
Confidence 887655542 11 246788899999
Q ss_pred EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC-------------
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK------------- 2240 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~------------- 2240 (2342)
+++.+..++.+++|++...........|...|++++|+|+|.++++++.++. .++|+....
T Consensus 854 ~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~------v~vw~~~~~~~~~~~~~~~~~~ 927 (1249)
T 3sfz_A 854 LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT------IRVWETKKVCKNSAIVLKQEID 927 (1249)
T ss_dssp EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC------EEEEEHHHHHSCCSSSEEEEEE
T ss_pred EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe------EEEEEccccceeeeecccceee
Confidence 9999999999999999866555555679999999999999999999998877 344543211
Q ss_pred -----------------------------------CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCC
Q 000085 2241 -----------------------------------QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGE 2285 (2342)
Q Consensus 2241 -----------------------------------~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgH 2285 (2342)
......++++... ...+..||.|++||+.+++.+..+. +|
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~----l~~g~~~g~i~i~d~~~~~~~~~~~-~h 1002 (1249)
T 3sfz_A 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY----VAFGDEDGAIKIIELPNNRVFSSGV-GH 1002 (1249)
T ss_dssp EEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE----EEEEETTSCCEEEETTTTSCEEECC-CC
T ss_pred EEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE----EEEEcCCCCEEEEEcCCCceeeecc-cC
Confidence 0111122232211 1222368999999999999888888 89
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2286 GQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
...|++++|+|+|++|++++.||.|++|+..+.
T Consensus 1003 ~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 1003 KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp SSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 999999999999999999999999999997654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=284.00 Aligned_cols=241 Identities=12% Similarity=0.051 Sum_probs=193.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCC-------c----ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEe
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDG-------A----KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~t-------g----kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWD 2066 (2342)
.+.+++|+|||++|++|+ |+++++||... . ........|...|++++|+|++ .|++|+.||+|+|||
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 356799999999999887 77778776321 1 1112233467889999999985 788999999999999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
+.++..... ....+.+|.+.|++++|+|++++|++|+.||+|++
T Consensus 110 ~~~~~~~~~------------------------------------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 110 LDENETLIV------------------------------------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp ECTTSSCEE------------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccCCCceeE------------------------------------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 988543211 12345789999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCC--cEEEEEecCCc-EEEEEeCCCeEEEEEeC-CceeeeecC-CCCCCeEEEEEccC-CCEEEEE
Q 000085 2147 HSIRRGRLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQHTLSSFTLN-GVLVARAKL-PLSGSIGCMEISLD-GHSALIG 2220 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh~--vssLSfSpDG~-IlVwdssdGsI~I~dln-G~~L~s~~~-~Hs~~ItsLafSPD-Gk~LaSG 2220 (2342)
||++++++++++.+|. +..++|++++. +++.+..++.|++|++. ++....... .|...+++++|+|+ ++++++|
T Consensus 154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 9999999999999875 78899999985 77888899999999986 333333322 26678999999995 5678887
Q ss_pred eCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC-C
Q 000085 2221 VNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN-T 2299 (2342)
Q Consensus 2221 S~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG-~ 2299 (2342)
+. ||.|++||+.+++++.++. +|...|++++|+|++ +
T Consensus 234 ~~-----------------------------------------dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 234 DE-----------------------------------------NGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVP 271 (344)
T ss_dssp ET-----------------------------------------TSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSC
T ss_pred cc-----------------------------------------CCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCe
Confidence 62 7889999999999999999 999999999999998 5
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 000085 2300 NLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2300 ~LaSGSsDGsIrVWDi~sL 2318 (2342)
+|++|+.||+|+|||....
T Consensus 272 ~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp CEEEEETTSCEEEECTTCC
T ss_pred EEEEEeCCCeEEEEECCCC
Confidence 7899999999999996654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=270.34 Aligned_cols=286 Identities=11% Similarity=0.046 Sum_probs=210.2
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEecc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+...+.+++|+|++++|++|+.||.|+|||+.++ +....+.+|...|++++|+| ++++|++|+.||+|++||+.
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 3445677999999999999999999999999876 45677889999999999999 69999999999999999998
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrI 2146 (2342)
++...... ....++..+.+|...|++++|+|+ +.++++++.||.|++
T Consensus 90 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 138 (351)
T 3f3f_A 90 PDQEECSG-------------------------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRL 138 (351)
T ss_dssp TTSCTTSS-------------------------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEE
T ss_pred CCcccccc-------------------------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEE
Confidence 75321000 001345677889999999999999 999999999999999
Q ss_pred EECCCCeEEEEEe-------------cC--CcEEEEEecC---CcEEEEEeCCCeEEEEEeCCcee--eeecCCCCCCeE
Q 000085 2147 HSIRRGRLIRRLV-------------GV--DAHAVSLSSE---GVIMTWNKLQHTLSSFTLNGVLV--ARAKLPLSGSIG 2206 (2342)
Q Consensus 2147 WDLrTGklIrsL~-------------gh--~vssLSfSpD---G~IlVwdssdGsI~I~dlnG~~L--~s~~~~Hs~~It 2206 (2342)
||+++++.+..+. .+ .+..++++|+ +..++.+..++.+..|....... ......|...|+
T Consensus 139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 218 (351)
T 3f3f_A 139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR 218 (351)
T ss_dssp EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEE
T ss_pred ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCccee
Confidence 9999876543322 11 3688999997 89999999999887776654332 333345999999
Q ss_pred EEEEccCC----CEEEEEeCCCCCCCCCcccccccCCCCCCcc-----------ccccccccccCCCCccCCCCeEEEEE
Q 000085 2207 CMEISLDG----HSALIGVNSSSTNNGSYDNIQGLNSKQSGTE-----------DFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2207 sLafSPDG----k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i-----------aFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
+++|+|++ +++++|+.|+. .++|++........ .....................+.+|+
T Consensus 219 ~~~~~p~~~~~~~~l~s~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 219 SISWAPSIGRWYQLIATGCKDGR------IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp EEEECCCSSCSSEEEEEEETTSC------EEEEEEEECC---------------------------------------CC
T ss_pred EEEECCCCCCcceEEEEEcCCCe------EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc
Confidence 99999998 89999998877 45666654321100 00111111111111112345566677
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2272 LHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2272 L~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
..+.+.+..+. +|...|++++|+|++++|++|+.||.|++|+....
T Consensus 293 ~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 293 NLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 77778888888 89999999999999999999999999999997654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=278.95 Aligned_cols=269 Identities=16% Similarity=0.199 Sum_probs=213.5
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccc--cCcceeEEEEEcCC----CCEEEEEEcCCcEEEEecCCccccee
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFAS--SGIRSSAVVSITHD----KEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs--~gI~Svt~VafSpD----GklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
+++++.++.+++|+..++... ..+..+. .+...+.+++|+|+ |++|++|+.||.|++||+.+++.+..
T Consensus 37 ~~~~~~~~~v~vw~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 110 (366)
T 3k26_A 37 VFATVGSNRVTLYECHSQGEI------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH 110 (366)
T ss_dssp EEEEEETTEEEEEEECGGGCE------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE
T ss_pred EEEECCCCEEEEEEcCCCcEE------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee
Confidence 344445559999997642211 1122121 13345778999999 67999999999999999999999999
Q ss_pred cccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2034 ASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
+.+|...|++++|+| ++++|++|+.||+|++||+.++.....
T Consensus 111 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------------- 153 (366)
T 3k26_A 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI------------------------------------- 153 (366)
T ss_dssp EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE-------------------------------------
T ss_pred ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE-------------------------------------
Confidence 999999999999999 899999999999999999987532111
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe----------------------------cC--C
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV----------------------------GV--D 2162 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~----------------------------gh--~ 2162 (2342)
...+.+|...|++++|+|++.++++++.||.|++||+++++.+..+. .| .
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 01126799999999999999999999999999999999876443322 13 3
Q ss_pred cEEEEEecCCcEEEEEeCCCeEEEEEeCCce--------------eeeecCCCCCCeEEEEEccC--CCEEEEEeCCCCC
Q 000085 2163 AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--------------VARAKLPLSGSIGCMEISLD--GHSALIGVNSSST 2226 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--------------L~s~~~~Hs~~ItsLafSPD--Gk~LaSGS~DGs~ 2226 (2342)
+..++++ |.+++.+..++.+++|++.... .......|...|++++|+|+ |++|++|+.
T Consensus 234 v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~---- 307 (366)
T 3k26_A 234 VDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ---- 307 (366)
T ss_dssp CCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT----
T ss_pred EEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec----
Confidence 6778887 7788999999999999986421 12233348889999999999 999998862
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe----EEEEEecCC--CCCeEEEEEecCCCE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK----VFHVLKLGE--GQDITALALNKDNTN 2300 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk----~L~tL~lgH--s~~ItsLafSPDG~~ 2300 (2342)
||.|++||+.+++ ....+. +| ...|++++|+|++++
T Consensus 308 -------------------------------------dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~ 349 (366)
T 3k26_A 308 -------------------------------------VGKLYVWDLEVEDPHKAKCTTLT-HHKCGAAIRQTSFSRDSSI 349 (366)
T ss_dssp -------------------------------------TSCEEEEECCSSSGGGCEEEEEC-CTTCCSCEEEEEECTTSSE
T ss_pred -------------------------------------CCcEEEEECCCCCCccccceEEc-ccccCCceEEEEeCCCCCe
Confidence 6779999999875 444666 66 789999999999999
Q ss_pred EEEEeCCCcEEEEeC
Q 000085 2301 LLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2301 LaSGSsDGsIrVWDi 2315 (2342)
|++|+.||.|++||+
T Consensus 350 l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 350 LIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEEETTSEEEEEEC
T ss_pred EEEEeCCCEEEEEEe
Confidence 999999999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=272.28 Aligned_cols=258 Identities=13% Similarity=0.106 Sum_probs=215.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|..+++++.|+++++|+..++. ....+..|. ..+.+++|+|++++|++|+.|++|++||+.+++.+..+
T Consensus 23 p~~~~l~s~~~dg~v~lWd~~~~~------~~~~~~~~~---~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 23 PTEPWVLTTLYSGRVELWNYETQV------EVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTE------EEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCc------eeEEeeccC---CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 467788999999999999976521 112233333 34567999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCc-cccccC--
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKS-RRRRIE-- 2110 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s-~~~~i~-- 2110 (2342)
.+|.+.|++++|+|++.+|+||+.|++|++||+.++.........|...+.+++|+| ++..+++++.|+. ..|+..
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999999999999999999999886544444567888899999999 5678888888875 457653
Q ss_pred Cce-EEecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2111 GPI-HVLRGHHREILCCCVSS--DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2111 ~~l-~~L~GHs~~Vt~VafSP--Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.+. ....+|...|.+++|+| ++.++++|+.||+|++||+++++++.++.+|. +..++|+|++.+++.+..++.|+
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~ 253 (304)
T 2ynn_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253 (304)
T ss_dssp SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEE
Confidence 233 33346778999999986 67899999999999999999999999999885 78899999999999999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCC--EEEEEe
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGH--SALIGV 2221 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk--~LaSGS 2221 (2342)
+|+.....+......|...+++++|+|+|. ++++|+
T Consensus 254 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 254 IWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp EEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE
T ss_pred EEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec
Confidence 999976555555556889999999999885 577776
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-27 Score=319.02 Aligned_cols=191 Identities=8% Similarity=0.026 Sum_probs=154.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|..+++++.|++|++|+..+... ... ..+-..+.+++|+| |++|++|+.|++|+|||+.+++++.++
T Consensus 27 pdg~~lAsgs~Dg~I~lw~~~~~~~--------~~~--~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 27 FTQNLLAIATVTGEVHIYGQQQVEV--------VIK--LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp TTTTEEEEEETTSEEEEECSTTCEE--------EEE--CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCcEE--------EEE--cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence 5678899999999999998654110 011 11233577799999 889999999999999999999988888
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc----------ccccCCCCCCccccccCC-CCCceeecCCC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR----------TGTIEPSSGMGTPGNSIG-SSTPANASADK 2103 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~----------t~~~~~~~~V~svs~SpD-G~~Las~s~D~ 2103 (2342)
. |.+.|++++|+|++++|++|+.||+|++||+.++.... .....+...+.+++|+|+ +..++++..++
T Consensus 96 ~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 96 F-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp E-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred c-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 6 77899999999999999999999999999998865421 112457788999999996 46777888777
Q ss_pred ccccccCC--ceEEecCC------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2104 SRRRRIEG--PIHVLRGH------------------HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2104 s~~~~i~~--~l~~L~GH------------------s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
...|+... ++..+.+| ...|++++|+|+|.+|++|+.||+|++||+++++++..
T Consensus 175 ~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 175 TLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp EEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred cEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 66887643 44555554 57899999999999999999999999999999988754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-26 Score=279.01 Aligned_cols=272 Identities=16% Similarity=0.165 Sum_probs=223.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..+++++.|+.+++|+..++... ..+.. .+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.+
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~------~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVS------ALAET--DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEE------EEEEC--CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCCEEEEECCCeEEEeeCCCCcEe------Eeeec--CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC
Confidence 345677788999999997663221 11111 1334567799999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
|...|++++| ++++|++|+.||+|++||+.... .....+
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------~~~~~~ 213 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN---------------------------------------HQIGTL 213 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS---------------------------------------CEEEEE
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc---------------------------------------ceeeEE
Confidence 9999999999 46899999999999999997531 234567
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCc-EEEEEe--CCCeEEEEEeC-
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGV-IMTWNK--LQHTLSSFTLN- 2190 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~-IlVwds--sdGsI~I~dln- 2190 (2342)
.+|...|.+++|+|++.++++|+.||.|++||+++++.+..+..|. +..++|+|+|. +++.+. .++.+++|++.
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 8899999999999999999999999999999999999999987764 78999999875 445443 68999999986
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
+..+... .+...|.+++|+|+|.++++++ |. .||.|++|
T Consensus 294 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~--g~-------------------------------------~dg~i~v~ 332 (401)
T 4aez_A 294 GARVNTV--DAGSQVTSLIWSPHSKEIMSTH--GF-------------------------------------PDNNLSIW 332 (401)
T ss_dssp CCEEEEE--ECSSCEEEEEECSSSSEEEEEE--CT-------------------------------------TTCEEEEE
T ss_pred CCEEEEE--eCCCcEEEEEECCCCCeEEEEe--ec-------------------------------------CCCcEEEE
Confidence 4444333 3778999999999999999863 11 27889999
Q ss_pred ECCCCeEEEE--EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2271 DLHTLKVFHV--LKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2271 DL~Tgk~L~t--L~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
|+.+++.... +. +|...|++++|+|++++|++++.||.|++|++....
T Consensus 333 ~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 333 SYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 9999765544 55 899999999999999999999999999999976553
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-26 Score=281.35 Aligned_cols=301 Identities=17% Similarity=0.253 Sum_probs=249.7
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+|..+++++.|+++++|+..++.. ...+..|.. .+.+++|+ ++++++|+.||+|++||+.+++.+..+.
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~~------~~~~~~h~~---~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGKC------LRTLVGHTG---GVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCE------EEECCCCSS---CEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cCCEEEEEECCCcEEEEECCCCcE------EEEEcCCCC---CEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence 477899999999999999765321 122333443 45567776 6799999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCc
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGP 2112 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~ 2112 (2342)
+|...|++++|+ ++.+++|+.||+|++||+.++...... ..+...+.++.+ ++..++++..++. ..|+. ...
T Consensus 197 ~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 271 (445)
T 2ovr_B 197 GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC 271 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE
T ss_pred CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE
Confidence 999999999995 678999999999999999987655443 356667777777 7888888887765 44654 456
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC-C
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-G 2191 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln-G 2191 (2342)
+..+.+|...|.+++| ++.++++|+.||+|++||+++++.+..+.+|.....++++++..++.+..+|.+++|++. +
T Consensus 272 ~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 272 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence 7888999999999999 789999999999999999999999999998887666777788899999999999999986 4
Q ss_pred ceeeeecC--CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2192 VLVARAKL--PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2192 ~~L~s~~~--~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
..+..... .|...|++++|+ +.++++|+. ||.|++
T Consensus 350 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-----------------------------------------dg~v~i 386 (445)
T 2ovr_B 350 QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD-----------------------------------------DGTVKL 386 (445)
T ss_dssp CEEEEECSTTSCSSCEEEEEEC--SSEEEEEET-----------------------------------------TSEEEE
T ss_pred cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC-----------------------------------------CCeEEE
Confidence 44444332 288999999995 689998872 788999
Q ss_pred EECCCCeEEEEEe----cCCCCCeEEEEEecCCCEEEEEeCCCc----EEEEeCCC
Q 000085 2270 LDLHTLKVFHVLK----LGEGQDITALALNKDNTNLLVSTADKQ----LIVFTDPA 2317 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~----lgHs~~ItsLafSPDG~~LaSGSsDGs----IrVWDi~s 2317 (2342)
||+.+++.+..+. .+|.+.|++++|+|++.+|++|+.||+ |.|||...
T Consensus 387 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 387 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999998882 267889999999999999999999998 99999643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-27 Score=286.43 Aligned_cols=259 Identities=15% Similarity=0.161 Sum_probs=212.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-----
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK----- 2029 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk----- 2029 (2342)
++|..+++++.|+++++|+..++. ....+..|... +.+++|+|+|++|++|+.|+.|++||+.+..
T Consensus 76 p~~~~l~s~s~D~~v~iWd~~~~~------~~~~~~~h~~~---v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~ 146 (380)
T 3iz6_a 76 PEKNWIVSASQDGRLIVWNALTSQ------KTHAIKLHCPW---VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGN 146 (380)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTE------EEEEEECCCTT---CCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCc------cceEEecCCCC---EEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCC
Confidence 456788999999999999976521 12233444444 4558999999999999999999999987532
Q ss_pred --cceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccccc----ccCCCCCCccccccC-CCCCceeecC
Q 000085 2030 --TLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTG----TIEPSSGMGTPGNSI-GSSTPANASA 2101 (2342)
Q Consensus 2030 --ll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~----~~~~~~~V~svs~Sp-DG~~Las~s~ 2101 (2342)
....+.+|.+.|.++.|+|+ +..|+||+.|++|++||+.++.....+ ...+...+.++.+++ ++..+++++.
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~ 226 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence 44678899999999999997 467999999999999999988765443 245677788888876 7888888888
Q ss_pred CCc-cccccC---CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------cEEEEE
Q 000085 2102 DKS-RRRRIE---GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---------AHAVSL 2168 (2342)
Q Consensus 2102 D~s-~~~~i~---~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---------vssLSf 2168 (2342)
|+. ..|+.. ..+..+.+|.+.|++++|+|++.+++||+.||+|++||+++++.+..+..+. +..++|
T Consensus 227 D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 876 457653 5678899999999999999999999999999999999999999998886532 578999
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCC-ceeeee---cCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNG-VLVARA---KLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG-~~L~s~---~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+|+|.+++.+..+|.+++|+... ..+... ...|.+.|++++|+|||.+|++|+.
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred CCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence 99999999999999999999863 333222 1359999999999999999999973
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=282.20 Aligned_cols=303 Identities=15% Similarity=0.198 Sum_probs=239.5
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.|++|++|+..++. ....+..|. ..+.+++|++++ +|++|+.||+|++||+.+++.+..+.
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~------~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~ 200 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKK------FLLQLSGHD---GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE 200 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTE------EEEEECCCS---SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEECCCCc------EEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEEC
Confidence 46788999999999999976521 122233344 456679999988 99999999999999999999999999
Q ss_pred cCCCCeEEEEec--CCCCEEEEEeCCCceEEEeccCCcccccc----------------------ccCCCCCCccccccC
Q 000085 2036 GHCAPVTCLALS--SDSNFLVTGSQDTTILLWRIHRAFTSRTG----------------------TIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2036 GHt~~VtcLAfS--PDG~~LaSGS~DGTVrVWDl~tg~~i~t~----------------------~~~~~~~V~svs~Sp 2091 (2342)
+|.+.|++++|+ +++.+|++|+.|++|++||+.+....... ...+...+. .+++
T Consensus 201 ~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~ 278 (464)
T 3v7d_B 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSG 278 (464)
T ss_dssp CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE--EEEE
T ss_pred CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE--EEcC
Confidence 999999999998 57899999999999999999876533211 122333333 3467
Q ss_pred CCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEE
Q 000085 2092 GSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSL 2168 (2342)
Q Consensus 2092 DG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSf 2168 (2342)
++..++++..++. ..|+. ..++..+.+|...|++++|+|++.++++|+.||+|++||+++++++..+.+|.....++
T Consensus 279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 358 (464)
T 3v7d_B 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 358 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 7888888887765 44665 45678889999999999999999999999999999999999999999999886443344
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
..++..++.+..+|.+++|++...... ....|...+..++|+++++++++|+
T Consensus 359 ~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------- 410 (464)
T 3v7d_B 359 RLSDKFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSGS--------------------------- 410 (464)
T ss_dssp EECSSEEEEEETTSEEEEEETTTCCEE-EEEECTTCCCEEEEEECSSEEEEEE---------------------------
T ss_pred EEcCCEEEEEeCCCcEEEEECCCCcee-eeecCCCCccEEEEEeCCCEEEEec---------------------------
Confidence 444788999999999999999753222 1123777888999999999999886
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
||.|++||+.+++.+..+..+|...|++++|+ ++..+++++.||.+.+|-
T Consensus 411 ---------------dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 411 ---------------ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ---------------TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred ---------------CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 57899999999999987555899999999997 444455556777666554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=277.73 Aligned_cols=273 Identities=15% Similarity=0.164 Sum_probs=220.7
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
.+..|+.+ .|++|++|+..++.... .+.. ..+...|++|+|+|+|++|++|+.||+|+|||+.+++.+..+.
T Consensus 115 ~~n~lAvg-ld~tV~lWd~~tg~~~~------~~~~-~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~ 186 (420)
T 4gga_A 115 SGNVLAVA-LDNSVYLWSASSGDILQ------LLQM-EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 186 (420)
T ss_dssp TTSEEEEE-ETTEEEEEETTTCCEEE------EEEC-CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEE-eCCEEEEEECCCCCEEE------EEEe-cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence 34445554 58899999987743211 1121 1233457789999999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~ 2115 (2342)
+|...|.+++++ +.+|++|+.|+++++||..... ..+..
T Consensus 187 ~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~---------------------------------------~~~~~ 225 (420)
T 4gga_A 187 SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE---------------------------------------HHVAT 225 (420)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---------------------------------------CEEEE
T ss_pred CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc---------------------------------------eeeEE
Confidence 999999999885 7899999999999999987631 23456
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCC--cEEEEEecCCc-EEEE--EeCCCeEEE
Q 000085 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR----LIRRLVGVD--AHAVSLSSEGV-IMTW--NKLQHTLSS 2186 (2342)
Q Consensus 2116 L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk----lIrsL~gh~--vssLSfSpDG~-IlVw--dssdGsI~I 2186 (2342)
+.+|...+.++.|++++.++++++.||.|++||..+++ .+.....|. +..++|+|++. +++. +..++.|++
T Consensus 226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i 305 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305 (420)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence 78999999999999999999999999999999998775 234454443 78889998765 4433 246899999
Q ss_pred EEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2187 FTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
|++......... .+...+.++.|++++..+++++ |. .|+.
T Consensus 306 wd~~t~~~~~~~-~~~~~v~~~~~~~~~~~lv~~s--g~-------------------------------------~d~~ 345 (420)
T 4gga_A 306 WNVCSGACLSAV-DAHSQVCSILWSPHYKELISGH--GF-------------------------------------AQNQ 345 (420)
T ss_dssp EETTTTEEEEEE-ECSSCEEEEEEETTTTEEEEEE--CT-------------------------------------TTCC
T ss_pred EeCCccccceee-ccccceeeeeecCCCCeEEEEE--ec-------------------------------------CCCE
Confidence 999754433322 2567899999999999999875 11 2788
Q ss_pred EEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+|||+.+++++.++. +|...|++++|+|||++|+||+.||+|+||++...
T Consensus 346 I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 346 LVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999 99999999999999999999999999999996543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-26 Score=277.29 Aligned_cols=258 Identities=12% Similarity=0.085 Sum_probs=212.7
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc------
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA------ 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg------ 2028 (2342)
+++..+++++.|+++++|+..++.. ...+..+. ..+.+++|+|+|.+|++|+.|+.+++|++...
T Consensus 74 ~d~~~l~s~s~Dg~v~vWd~~~~~~------~~~~~~~~---~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 74 KDKRRIVSSSQDGKVIVWDSFTTNK------EHAVTMPC---TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCE------EEEEECSS---SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCc------ceEEecCC---CCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 3567899999999999999765321 12223333 34567999999999999999999999998643
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC--CCCCceeecCCCc-c
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI--GSSTPANASADKS-R 2105 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp--DG~~Las~s~D~s-~ 2105 (2342)
.....+.+|.+.|.+++|+|++..|+||+.|++|++||+.++.....+ ..|...+.++.+++ ++..+++++.|+. .
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 345667889999999999999999999999999999999987665544 45667778887776 5678888888875 4
Q ss_pred cccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEEe
Q 000085 2106 RRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2106 ~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwds 2179 (2342)
.|+. ..++..+.+|...|++++|+|++.++++|+.||+|++||+++++.+..+..+ .+..++|+++|.+++.+.
T Consensus 224 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 5765 4567888999999999999999999999999999999999999888777654 367899999999999999
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
.++.|++|++..........+|...|++++|+|||++|++|+.
T Consensus 304 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 9999999998533333344569999999999999999999973
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=280.39 Aligned_cols=295 Identities=12% Similarity=0.079 Sum_probs=233.6
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
+..+++..+++++.|+.+++|+..++. . ......+...+.+++|+|++++|++|+.|++|++||+.+++.+
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~------~---~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNL------Q---REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCE------E---EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcc------e---eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence 345678899999999999999865421 1 1111233445677999999999999999999999999999999
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc--cCCCCCCccccccCCCCCceeecCCCcccccc
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT--IEPSSGMGTPGNSIGSSTPANASADKSRRRRI 2109 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~--~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i 2109 (2342)
..+.+|.+.|++++|+|++++|++|+.|++|++||+.++.....+. ..+...+..+.+.+++...
T Consensus 175 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------- 241 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ------------- 241 (420)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-------------
T ss_pred eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-------------
Confidence 9999999999999999999999999999999999999876655542 2344455555554433221
Q ss_pred CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-C--CcEEEEEecCCc-EEEEEeCCCeEE
Q 000085 2110 EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-V--DAHAVSLSSEGV-IMTWNKLQHTLS 2185 (2342)
Q Consensus 2110 ~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h--~vssLSfSpDG~-IlVwdssdGsI~ 2185 (2342)
....|...+++++|+|++.++++|+.||.|++||+++++.+..+.. | .+..++|+|+|. +++.+..+|.|+
T Consensus 242 -----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 242 -----LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp -----CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred -----eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 2244678899999999999999999999999999999998888754 3 378999999999 999999999999
Q ss_pred EEEeCCc-e-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2186 SFTLNGV-L-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2186 I~dlnG~-~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
+|++... . +......|...|+++.+ ++++++++|+.
T Consensus 317 vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~----------------------------------------- 354 (420)
T 3vl1_A 317 QWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGF----------------------------------------- 354 (420)
T ss_dssp EEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETT-----------------------------------------
T ss_pred EEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecC-----------------------------------------
Confidence 9999742 2 33333337788888855 57889998862
Q ss_pred CCeEEEEECCCC---------eEEEEEecCCCCCeEEEEEecCCC---EEEEEeCCCcEEEEeCC
Q 000085 2264 SPSICFLDLHTL---------KVFHVLKLGEGQDITALALNKDNT---NLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2264 DGsIrIWDL~Tg---------k~L~tL~lgHs~~ItsLafSPDG~---~LaSGSsDGsIrVWDi~ 2316 (2342)
|+.|++||+... .....+. +|...|.+++|+|++. .|++++.+|.+.+|++.
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLV-SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEEC-CSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CccEEEEeccCCCCCccceeccCccEEc-cCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 677899987662 1112233 7888999999999999 89999999999999964
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-26 Score=303.07 Aligned_cols=259 Identities=13% Similarity=0.101 Sum_probs=215.1
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|..+++++.++.|++|+..++. ....+..|. ..+.+++|+|++++|++|+.||.|+|||+.+++.+..+
T Consensus 23 p~~~~la~~~~~g~v~iwd~~~~~------~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 23 PTEPWVLTTLYSGRVEIWNYETQV------EVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTE------EEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCc------eEEEEecCC---CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 356778889999999999966521 122333343 34667999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCc-ccccc--C
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKS-RRRRI--E 2110 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s-~~~~i--~ 2110 (2342)
.+|.+.|++++|+|++.+|++|+.||+|++||+.++.........+...+.++.|+| ++..++++..++. ..|+. .
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~ 173 (814)
T 3mkq_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999999999999999999999886444444556778899999999 8888888888765 45665 3
Q ss_pred CceEEecCC-CCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEE
Q 000085 2111 GPIHVLRGH-HREILCCCVSS--DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2111 ~~l~~L~GH-s~~Vt~VafSP--Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
.....+..| ...|.+++|+| ++.++++|+.||.|++||+++++.+..+.+|. +..++|+|+|.+++.+..+|.++
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~ 253 (814)
T 3mkq_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253 (814)
T ss_dssp SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence 445555554 48999999999 99999999999999999999999999998764 78899999999999999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCC--EEEEEeC
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGH--SALIGVN 2222 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk--~LaSGS~ 2222 (2342)
+|++...........|...|.+++|+|+|. ++++|+.
T Consensus 254 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 292 (814)
T 3mkq_A 254 IWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (814)
T ss_dssp EEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred EEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence 999985444444455888999999999997 5666653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-26 Score=272.40 Aligned_cols=243 Identities=14% Similarity=0.153 Sum_probs=192.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccceec-cc-CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTLETA-SG-HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll~tL-~G-Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
.+.+++|+++ +|++|+.|++|++||+.++ +....+ .+ |.+.|++++|+|++++|++|+.|++|+|||+......
T Consensus 16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence 4566899987 9999999999999999875 344555 44 9999999999999999999999999999998652100
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR-- 2151 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-- 2151 (2342)
. .....+..+.+|...|++++|+|++++|++|+.|++|++||++.
T Consensus 94 ~---------------------------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 94 T---------------------------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp ----------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred c---------------------------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence 0 00124567889999999999999999999999999999999943
Q ss_pred --CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCc--eeeeecCCCCCCeEEEEEccC--CCEEEEEeCC
Q 000085 2152 --GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGV--LVARAKLPLSGSIGCMEISLD--GHSALIGVNS 2223 (2342)
Q Consensus 2152 --GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPD--Gk~LaSGS~D 2223 (2342)
.+++..+.+|. +..++|+|++.+++.+..++.|++|+.... .......+|...|.+++|+|+ +.++++|+.
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~- 219 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD- 219 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence 35677888775 789999999999999999999999998643 233344569999999999998 778998873
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--------eEEEEEecCCCCCeEEEEEe
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--------KVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--------k~L~tL~lgHs~~ItsLafS 2295 (2342)
|++|++||+.++ .+...+...|...|++++|+
T Consensus 220 ----------------------------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 259 (330)
T 2hes_X 220 ----------------------------------------DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG 259 (330)
T ss_dssp ----------------------------------------TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC
T ss_pred ----------------------------------------CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc
Confidence 677999988654 44555553489999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC
Q 000085 2296 KDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2296 PDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+++ +|++|+.||.|++|+...
T Consensus 260 ~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 260 FNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp TTS-CEEEEETTSCEEEEEEET
T ss_pred CCC-EEEEEeCCCEEEEEEcCC
Confidence 766 799999999999999643
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=294.51 Aligned_cols=306 Identities=13% Similarity=0.136 Sum_probs=245.9
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCc----ccceecccCCCC-eEEEEecC--CCCEEEEEeCCCceEEEeccCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGA----KTLETASGHCAP-VTCLALSS--DSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tg----kll~tL~GHt~~-VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.+.+++|+|+|++|++|+ ++.|+|||+.++ +....+.+|.+. |++++|+| ++++|++|+.||+|++||+.++
T Consensus 20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 98 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence 345699999999999998 899999999999 889999999999 99999999 9999999999999999999754
Q ss_pred ------c-cccccccCCCCCCccccccCCCCCceeecCC-----CccccccCCceEEecCCCCCeEEEEEecCCC-EEEE
Q 000085 2071 ------F-TSRTGTIEPSSGMGTPGNSIGSSTPANASAD-----KSRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVS 2137 (2342)
Q Consensus 2071 ------~-~i~t~~~~~~~~V~svs~SpDG~~Las~s~D-----~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaS 2137 (2342)
. ........+...+.+++++|++..++++..+ .+..|+....+..+.+|...|++++|+|++. .+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 178 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 178 (615)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEE
Confidence 1 1111234567889999999999999888876 3466888888999999999999999999998 8999
Q ss_pred EeCCCcEEEEECCCCeEEEEEecC-----CcEEEEEecC-CcEEEEEeCCCeEEEEEeC-CceeeeecC---CCCCCeEE
Q 000085 2138 CSDSSDLLLHSIRRGRLIRRLVGV-----DAHAVSLSSE-GVIMTWNKLQHTLSSFTLN-GVLVARAKL---PLSGSIGC 2207 (2342)
Q Consensus 2138 GS~DGtIrIWDLrTGklIrsL~gh-----~vssLSfSpD-G~IlVwdssdGsI~I~dln-G~~L~s~~~---~Hs~~Its 2207 (2342)
++.||.|++||+.+++.+..+.+| .+..++|+|+ |.+++.+..++.+++|++. +..+..... .|...|.+
T Consensus 179 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 179 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence 999999999999999999999876 3678999999 9999999999999999986 444444324 69999999
Q ss_pred EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc-ccccc----cc-----ccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2208 MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT-EDFDL----AS-----DQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2208 LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~-iaFsp----d~-----~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
++|+ ++.++++++.++. .++|++....... ..... .. .........+..|+.|++||+.+++.
T Consensus 259 ~~~~-~~~~l~~~~~d~~------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADAT------IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp EEES-SSSEEEEEETTSE------EEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred EEEc-CCCEEEEEcCCCc------EEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 9999 9999999998776 4556655432100 00000 00 00111122233699999999999999
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+..+. +|...|++++| |+ |++++.||.|++|+..
T Consensus 332 ~~~~~-~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 332 LKTIS-GHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEC-CCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred EEEEe-CCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 88888 88888988888 77 7777777777777743
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=281.42 Aligned_cols=275 Identities=15% Similarity=0.164 Sum_probs=210.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCC-------cEEEEecCCcccc----------eecccCCCCeEEEEecCCCCEEEEE----
Q 000085 1998 SSAVVSITHDKEIITGGHVDG-------SIKLLTSDGAKTL----------ETASGHCAPVTCLALSSDSNFLVTG---- 2056 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DG-------sIrVWDl~tgkll----------~tL~GHt~~VtcLAfSPDG~~LaSG---- 2056 (2342)
.+.+++|+|||++|++|+.|. .|++|++..+... ..+.+|.+.|+|++++ +..+++|
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence 366799999999999997543 5999998765321 2467899999998875 5566665
Q ss_pred -------eCCCceEEEeccCCcccccc--------ccCCCCCCccccccCCCCCceeec--CCC-ccccccCC--ceEEe
Q 000085 2057 -------SQDTTILLWRIHRAFTSRTG--------TIEPSSGMGTPGNSIGSSTPANAS--ADK-SRRRRIEG--PIHVL 2116 (2342)
Q Consensus 2057 -------S~DGTVrVWDl~tg~~i~t~--------~~~~~~~V~svs~SpDG~~Las~s--~D~-s~~~~i~~--~l~~L 2116 (2342)
+.|+++++|++......... .......+..++|+|||+.+++++ .|+ ++.|+... ++..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 45788999998765322111 122334467899999999986544 455 35577643 34444
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe--cCC--cEEEEEecCCcEEEEEeCCC----eEEEEE
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV--GVD--AHAVSLSSEGVIMTWNKLQH----TLSSFT 2188 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~--gh~--vssLSfSpDG~IlVwdssdG----sI~I~d 2188 (2342)
.|...|++++|+|||+++++++.| .+++|+..++..+.... .|. +..++|+|||..++....++ .+..|+
T Consensus 174 -~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 174 -ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp -ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred -CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 478899999999999999999855 56777777777665432 343 68899999999998887665 577787
Q ss_pred eCCcee----eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2189 LNGVLV----ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2189 lnG~~L----~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
+..... ......|...|++++|+|||++|++|+. |
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-----------------------------------------D 290 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-----------------------------------------D 290 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-----------------------------------------T
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC-----------------------------------------C
Confidence 753322 1223348899999999999999999973 6
Q ss_pred CeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2265 PSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
++|+|||+.+++++..+..+|...|++|+|||||++|++|+.|++|+||+++.
T Consensus 291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 77999999999999988669999999999999999999999999999999864
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=279.26 Aligned_cols=240 Identities=12% Similarity=0.081 Sum_probs=196.2
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|+|++|++|+.|++|+|||+.+++ .+..+.+|.+.|++++|++ ++++|+|||.|++|++||+.++..
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 345679999999999999999999999998764 4678899999999999986 489999999999999999876421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLr 2150 (2342)
.....+.+|...|++++|+|+ +.++++|+.||+|++||++
T Consensus 94 --------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~ 135 (316)
T 3bg1_A 94 --------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT 135 (316)
T ss_dssp --------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC
T ss_pred --------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC
Confidence 123456789999999999998 7899999999999999998
Q ss_pred CCeE---EEEEecCC--cEEEEEecC-----------------CcEEEEEeCCCeEEEEEeCCc---eeeeecCCCCCCe
Q 000085 2151 RGRL---IRRLVGVD--AHAVSLSSE-----------------GVIMTWNKLQHTLSSFTLNGV---LVARAKLPLSGSI 2205 (2342)
Q Consensus 2151 TGkl---IrsL~gh~--vssLSfSpD-----------------G~IlVwdssdGsI~I~dlnG~---~L~s~~~~Hs~~I 2205 (2342)
++.. ...+.+|. +..++|+|+ +.+++.+..++.|++|++... ........|...|
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V 215 (316)
T 3bg1_A 136 GEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV 215 (316)
T ss_dssp SSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE
T ss_pred CCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce
Confidence 7632 23333443 677889887 467888889999999999642 2333344599999
Q ss_pred EEEEEccCC----CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC---e-E
Q 000085 2206 GCMEISLDG----HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL---K-V 2277 (2342)
Q Consensus 2206 tsLafSPDG----k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg---k-~ 2277 (2342)
.+++|+|++ .+|++|+. |++|+|||+.+. + .
T Consensus 216 ~~v~~sp~~~~~~~~las~s~-----------------------------------------D~~v~iw~~~~~~~~~~~ 254 (316)
T 3bg1_A 216 RDVAWAPSIGLPTSTIASCSQ-----------------------------------------DGRVFIWTCDDASSNTWS 254 (316)
T ss_dssp EEEECCCCSSCSCCEEEEEET-----------------------------------------TCEEEEEECSSTTCCCCB
T ss_pred EEEEecCCCCCCCceEEEEcC-----------------------------------------CCeEEEEEccCccccchh
Confidence 999999987 88998873 788999998762 1 1
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
...+. .|...|.+++|+|++++|++|+.||.|++|+..
T Consensus 255 ~~~~~-~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 255 PKLLH-KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCEEE-ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred hhhhh-cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 12333 688899999999999999999999999999954
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=273.63 Aligned_cols=275 Identities=14% Similarity=0.087 Sum_probs=226.9
Q ss_pred ceeEEEEEcCCCC-EEEEEEcCCcEEEEec----CCcc------cceeccc----------CCCCeEEEEecCCCCEEEE
Q 000085 1997 RSSAVVSITHDKE-IITGGHVDGSIKLLTS----DGAK------TLETASG----------HCAPVTCLALSSDSNFLVT 2055 (2342)
Q Consensus 1997 ~Svt~VafSpDGk-lLASGS~DGsIrVWDl----~tgk------ll~tL~G----------Ht~~VtcLAfSPDG~~LaS 2055 (2342)
..+.+++|+|+|+ +|++|+.||.|++|++ .+++ ....+.. |.+.|++++|+|++++|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 3456799999999 9999999999999999 8887 3444433 6889999999999999999
Q ss_pred EeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCC----------
Q 000085 2056 GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHRE---------- 2122 (2342)
Q Consensus 2056 GS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~---------- 2122 (2342)
|+.||+|++||. ++..... ...+...+.++.++|++..++++..++. ..|+. ...+..+..|...
T Consensus 126 ~~~dg~i~i~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 126 GVENGELRLWNK-TGALLNV-LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp EETTSCEEEEET-TSCEEEE-ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred EeCCCeEEEEeC-CCCeeee-ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence 999999999993 3333332 3467788999999999999988887765 44655 4456677777766
Q ss_pred -----eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceee
Q 000085 2123 -----ILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA 2195 (2342)
Q Consensus 2123 -----Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~ 2195 (2342)
+.+++|++++ .+++++.||.|++||+++++.+..+..|. +..++++++|.+++.+..++.+++|++......
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 9999999875 58899999999999999999888887764 788999999999999999999999998754444
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
.....|...|.+++|+|++ ++++++. |+.|++||+.++
T Consensus 283 ~~~~~~~~~i~~~~~~~~~-~l~~~~~-----------------------------------------d~~i~i~d~~~~ 320 (425)
T 1r5m_A 283 NCFYGHSQSIVSASWVGDD-KVISCSM-----------------------------------------DGSVRLWSLKQN 320 (425)
T ss_dssp EEECCCSSCEEEEEEETTT-EEEEEET-----------------------------------------TSEEEEEETTTT
T ss_pred eEecCCCccEEEEEECCCC-EEEEEeC-----------------------------------------CCcEEEEECCCC
Confidence 4445589999999999999 8887762 678999999999
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
+.+..+. .|...|++++|+|++++|++++.||.|++|+...
T Consensus 321 ~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 321 TLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred cEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 9999988 8899999999999999999999999999999643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-26 Score=279.93 Aligned_cols=274 Identities=14% Similarity=0.119 Sum_probs=218.1
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-----------cceecccCC------------CCeEEEEecCCC--C
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-----------TLETASGHC------------APVTCLALSSDS--N 2051 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-----------ll~tL~GHt------------~~VtcLAfSPDG--~ 2051 (2342)
..+.+++|+|+|++|++|+.||.|+|||+.+++ ....+.+|. +.|++++|+|++ .
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 457789999999999999999999999999876 477889998 889999999998 8
Q ss_pred EEEEEeCCCceEEEeccCCcccc---------------------------------------ccccCCCCCCccccccCC
Q 000085 2052 FLVTGSQDTTILLWRIHRAFTSR---------------------------------------TGTIEPSSGMGTPGNSIG 2092 (2342)
Q Consensus 2052 ~LaSGS~DGTVrVWDl~tg~~i~---------------------------------------t~~~~~~~~V~svs~SpD 2092 (2342)
+|++|+.|++|++||+.++.... .....|...+.+++++|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 99999999999999998643210 113467888999999999
Q ss_pred CCCceeecCCC-ccccccCCc---eE-------EecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeE----EE
Q 000085 2093 SSTPANASADK-SRRRRIEGP---IH-------VLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRL----IR 2156 (2342)
Q Consensus 2093 G~~Las~s~D~-s~~~~i~~~---l~-------~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGkl----Ir 2156 (2342)
+..++++ .|+ +..|+.... .. .+.+|...|++++|+|++ .++++|+.||+|++||+++++. +.
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 267 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSK 267 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCE
T ss_pred CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceee
Confidence 9999988 454 456776522 22 356899999999999998 9999999999999999999887 77
Q ss_pred EEecC--------------CcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCC---------------eE
Q 000085 2157 RLVGV--------------DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGS---------------IG 2206 (2342)
Q Consensus 2157 sL~gh--------------~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~---------------It 2206 (2342)
.+..| .+..++|+|+|.+++.+.. +.+++|++.. .........|... +.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 346 (447)
T 3dw8_B 268 LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKF 346 (447)
T ss_dssp EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCC
T ss_pred EeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccce
Confidence 78775 5789999999999999888 9999999963 2222222234321 33
Q ss_pred EEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe----
Q 000085 2207 CMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK---- 2282 (2342)
Q Consensus 2207 sLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~---- 2282 (2342)
.++|+|+|++|++|+. ||.|++||+.+++.+....
T Consensus 347 ~~~~s~~~~~l~s~s~-----------------------------------------dg~v~iwd~~~~~~~~~~~~~~~ 385 (447)
T 3dw8_B 347 ECCWNGSDSVVMTGSY-----------------------------------------NNFFRMFDRNTKRDITLEASREN 385 (447)
T ss_dssp CEEECTTSSEEEEECS-----------------------------------------TTEEEEEETTTCCEEEEECCSTT
T ss_pred EEEECCCCCEEEEecc-----------------------------------------CCEEEEEEcCCCcceeeeecccc
Confidence 4999999999998863 6778888888877653211
Q ss_pred ---------------------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2283 ---------------------------LGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2283 ---------------------------lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
..+...|.+++|+|++.+|++++.++ +++|.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 386 NKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 12345789999999999999988876 77776
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=267.91 Aligned_cols=235 Identities=17% Similarity=0.175 Sum_probs=193.4
Q ss_pred eeEEEEE-----cC-CCCEEEEEEcCCcEEEEecCCc-------ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEE
Q 000085 1998 SSAVVSI-----TH-DKEIITGGHVDGSIKLLTSDGA-------KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILL 2064 (2342)
Q Consensus 1998 Svt~Vaf-----Sp-DGklLASGS~DGsIrVWDl~tg-------kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrV 2064 (2342)
.|.+++| ++ ++++|++|+.|++|+|||+.++ .....+.+|...|++++|+|++.+|+||+.|++|++
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l 102 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 4566888 66 8999999999999999998753 345678999999999999999999999999999999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtI 2144 (2342)
||+.++. .+..+.+|...|++++|+|+++++++|+.||+|
T Consensus 103 wd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 103 WDLRTGT----------------------------------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp EETTSSC----------------------------------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCE
T ss_pred EECCCCc----------------------------------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEE
Confidence 9998742 345678999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEe---cC--CcEEEEEecCC----------cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEE
Q 000085 2145 LLHSIRRGRLIRRLV---GV--DAHAVSLSSEG----------VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCME 2209 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~---gh--~vssLSfSpDG----------~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLa 2209 (2342)
++||+... ...... .| .+..++++|++ .+++.+..++.|++|+..+.... ....|...|++++
T Consensus 143 ~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 143 KLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY-TFKAHESNVNHLS 220 (343)
T ss_dssp EEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEE-EEECCSSCEEEEE
T ss_pred EEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeE-EEcCccccceEEE
Confidence 99999844 333332 23 37889999987 68888999999999996654333 3345999999999
Q ss_pred EccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC-CCeEEEEEecCCCCC
Q 000085 2210 ISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH-TLKVFHVLKLGEGQD 2288 (2342)
Q Consensus 2210 fSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~-Tgk~L~tL~lgHs~~ 2288 (2342)
|+|+|++|++|+. |+.|++||+. .......+. +...
T Consensus 221 ~s~~g~~l~sgs~-----------------------------------------dg~v~iwd~~~~~~~~~~~~--~~~~ 257 (343)
T 2xzm_R 221 ISPNGKYIATGGK-----------------------------------------DKKLLIWDILNLTYPQREFD--AGST 257 (343)
T ss_dssp ECTTSSEEEEEET-----------------------------------------TCEEEEEESSCCSSCSEEEE--CSSC
T ss_pred ECCCCCEEEEEcC-----------------------------------------CCeEEEEECCCCcccceeec--CCCc
Confidence 9999999999973 7889999994 444444444 4567
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2289 ITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2289 ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++++|+|++.+|+ ++.|+.|++|+....
T Consensus 258 v~~v~~sp~~~~la-~~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 258 INQIAFNPKLQWVA-VGTDQGVKIFNLMTQ 286 (343)
T ss_dssp EEEEEECSSSCEEE-EEESSCEEEEESSSC
T ss_pred EEEEEECCCCCEEE-EECCCCEEEEEeCCC
Confidence 99999999998776 556888999997543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=266.66 Aligned_cols=277 Identities=13% Similarity=0.151 Sum_probs=218.1
Q ss_pred CcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcccceecc-------------cCCCCeEEEEecC-CCCEEEEEeCC
Q 000085 1995 GIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTLETAS-------------GHCAPVTCLALSS-DSNFLVTGSQD 2059 (2342)
Q Consensus 1995 gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL~-------------GHt~~VtcLAfSP-DG~~LaSGS~D 2059 (2342)
+...+.+++|+| ++++|++|+.||.|++||+.+++....+. +|...|++++|+| ++.+|++|+.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 334567799999 99999999999999999999887665543 6999999999999 78899999999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC---CCEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD---LGVVV 2136 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD---g~lLa 2136 (2342)
++|++||+.++.. ...+ .+...+.+++|++. +.+++
T Consensus 122 ~~i~iwd~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 122 KTLKVWDTNTLQT----------------------------------------ADVF-NFEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp SEEEEEETTTTEE----------------------------------------EEEE-ECSSCEEEEEECSSCSSCCEEE
T ss_pred CeEEEeeCCCCcc----------------------------------------ceec-cCCCceeeeEeecCCCCCcEEE
Confidence 9999999987532 1122 36678899999884 55999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCc-EEEEEeCCCeEEEEEeCCce--eeee--------------
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVL--VARA-------------- 2197 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~--L~s~-------------- 2197 (2342)
+|+.||.|++||+++++.+..+..|. +..++++|++. +++.+..++.+++|++.... +...
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 99999999999999999999998764 78999999998 68888999999999985321 1111
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccc------ccc------cccCCCCccCCCC
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDL------ASD------QSVDNNRFDFPSP 2265 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFsp------d~~------~s~ss~~ias~DG 2265 (2342)
...|...|++++|+|+|+++++|+.++. ..+|++............ ... ...........|+
T Consensus 241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNR------MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp SCSCSSCEEEEEECTTSSEEEEEETTSC------EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred cccccCceeEEEEcCCCCEEEEecCCCe------EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence 1348899999999999999999998877 456766554321111000 000 0011111223589
Q ss_pred eEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2266 SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.|++||+.+++++..+. +|...|++++|+|++++|++|+.||.|++|+.....
T Consensus 315 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEEETTTCCEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEEECcCCcceeeec-cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 99999999999999998 999999999999999999999999999999976553
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=264.11 Aligned_cols=277 Identities=13% Similarity=0.149 Sum_probs=232.7
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.+.+++|+|||++++++..++.+.+|............+|.+.|++++|+|++++|++++ ||+|++||+.++.......
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~ 89 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee
Confidence 355699999999999888888777776655444444558999999999999999999999 9999999998865443331
Q ss_pred ----cCCCCCCccccccCCCCCceeecCCCc-cccccCC----ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000085 2078 ----IEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG----PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2078 ----~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~----~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWD 2148 (2342)
..+...+.++.++|+++.++++..++. ..|+... ....+.+|...|++++|+|+++++++++.||.|++||
T Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d 169 (337)
T 1gxr_A 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 257788999999999999988887764 5566543 4567788999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2149 IRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2149 LrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
+++++.+..+..|. +..++++|+|..++.+..++.+++|++........ ..|...+.+++|+|+|+++++|+.
T Consensus 170 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~---- 244 (337)
T 1gxr_A 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGME---- 244 (337)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEECTTSSEEEEEET----
T ss_pred CCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ecCCCceEEEEECCCCCEEEEEcC----
Confidence 99999999998764 78899999999999999999999999975433322 237889999999999999998863
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
|+.|++||+.+++.. .+. .|...|++++|+|++++|++++.
T Consensus 245 -------------------------------------~~~i~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~ 285 (337)
T 1gxr_A 245 -------------------------------------SSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp -------------------------------------TSCEEEEETTSSCEE-EEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred -------------------------------------CCcEEEEECCCCCeE-EEc-CCccceeEEEECCCCCEEEEecC
Confidence 567999999998764 455 79999999999999999999999
Q ss_pred CCcEEEEeCCCCC
Q 000085 2307 DKQLIVFTDPALS 2319 (2342)
Q Consensus 2307 DGsIrVWDi~sLs 2319 (2342)
||.|++|+.....
T Consensus 286 dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 286 DNLLNAWRTPYGA 298 (337)
T ss_dssp TSEEEEEETTTCC
T ss_pred CCcEEEEECCCCe
Confidence 9999999976653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=281.53 Aligned_cols=278 Identities=13% Similarity=0.132 Sum_probs=210.8
Q ss_pred CcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCC---cccce-ec-ccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1995 GIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDG---AKTLE-TA-SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1995 gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~t---gkll~-tL-~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+...+.+++|+| ++++|++|+.||+|+|||+.+ +.... .+ .+|.+.|++++|+|++++|++|+.||+|++||+.
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 334567799999 999999999999999999877 43221 22 2599999999999999999999999999999995
Q ss_pred ---CCcccccc--------c-cC--CCCCCcccc--ccCCCCCceeecCCCc-ccccc--CCceEEecC--CCCCeEEEE
Q 000085 2069 ---RAFTSRTG--------T-IE--PSSGMGTPG--NSIGSSTPANASADKS-RRRRI--EGPIHVLRG--HHREILCCC 2127 (2342)
Q Consensus 2069 ---tg~~i~t~--------~-~~--~~~~V~svs--~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~G--Hs~~Vt~Va 2127 (2342)
.+...... . .. +...+.++. +++++..++++..++. ..|+. ...+..+.+ |...|++++
T Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence 33222211 0 01 333444444 5578888988888765 45665 456778888 899999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCC--cEEEEE----ecCCcEEEEEeCCCeEEEEEeCCceeeeecCC
Q 000085 2128 VSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV-GVD--AHAVSL----SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP 2200 (2342)
Q Consensus 2128 fSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~-gh~--vssLSf----SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~ 2200 (2342)
|+|++.++++|+.||+|++||+++++++..+. .|. +..+++ +++|.+++.+..++.|++|++...........
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence 99999999999999999999999999999886 443 667744 45788999999999999999974332222211
Q ss_pred --------------------------CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccc
Q 000085 2201 --------------------------LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQS 2254 (2342)
Q Consensus 2201 --------------------------Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s 2254 (2342)
|...|++++|+ ++++|++|+.
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~-------------------------------- 348 (437)
T 3gre_A 302 SDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA-------------------------------- 348 (437)
T ss_dssp SSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG--------------------------------
T ss_pred CCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC--------------------------------
Confidence 55668888888 7778888764
Q ss_pred cCCCCccCCCCeEEEEECCCCeEEEEEec------------------------------------CCCCCeEEEEEecC-
Q 000085 2255 VDNNRFDFPSPSICFLDLHTLKVFHVLKL------------------------------------GEGQDITALALNKD- 2297 (2342)
Q Consensus 2255 ~ss~~ias~DGsIrIWDL~Tgk~L~tL~l------------------------------------gHs~~ItsLafSPD- 2297 (2342)
|+.|++||+.+++.+..+.. .|...|++++|+++
T Consensus 349 ---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~ 419 (437)
T 3gre_A 349 ---------TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD 419 (437)
T ss_dssp ---------GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS
T ss_pred ---------CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC
Confidence 45555555555544444431 38999999999998
Q ss_pred -CCEEEEEeCCCcEEEEe
Q 000085 2298 -NTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2298 -G~~LaSGSsDGsIrVWD 2314 (2342)
+.+|++|+.||.|+||+
T Consensus 420 ~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 420 ETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEcCCceEEEeC
Confidence 78999999999999995
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=266.14 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=202.1
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecC--CcccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSD--GAKTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~--tgkll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +++|++|+.||+|++||+.++..
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 91 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence 346679999999999999999999999998 66778889999999999999987 99999999999999999987421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLr 2150 (2342)
.....+.+|...|++++|+|+ +.++++++.||.|++||++
T Consensus 92 --------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 92 --------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp --------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred --------------------------------------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 134556789999999999999 9999999999999999999
Q ss_pred CCe--EEEEEecCC--cEEEEEec-------------CCcEEEEEeCCCeEEEEEeCCc----eeeeecCCCCCCeEEEE
Q 000085 2151 RGR--LIRRLVGVD--AHAVSLSS-------------EGVIMTWNKLQHTLSSFTLNGV----LVARAKLPLSGSIGCME 2209 (2342)
Q Consensus 2151 TGk--lIrsL~gh~--vssLSfSp-------------DG~IlVwdssdGsI~I~dlnG~----~L~s~~~~Hs~~ItsLa 2209 (2342)
++. ....+..|. +..++|+| ++..++.+..++.|++|++... .+......|...|++++
T Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
T 3jrp_A 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 213 (379)
T ss_dssp TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE
Confidence 873 334455553 78999999 6999999999999999998632 12233445999999999
Q ss_pred EccC---CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe---EEEEEe-
Q 000085 2210 ISLD---GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK---VFHVLK- 2282 (2342)
Q Consensus 2210 fSPD---Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk---~L~tL~- 2282 (2342)
|+|+ +.++++|+. ||.|++||+.++. ....+.
T Consensus 214 ~sp~~~~~~~l~s~~~-----------------------------------------dg~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 214 WSPTVLLRSYLASVSQ-----------------------------------------DRTCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp ECCCCSSSEEEEEEET-----------------------------------------TSCEEEEEESSTTSCCEEEESSS
T ss_pred ECCCCCCCCeEEEEeC-----------------------------------------CCEEEEEeCCCCCccceeeeecc
Confidence 9999 899998873 6779999998863 112221
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
..|...|++++|+|++++|++++.||.|++|+..
T Consensus 253 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 253 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 1478899999999999999999999999999965
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=272.47 Aligned_cols=260 Identities=14% Similarity=0.105 Sum_probs=196.3
Q ss_pred cCCCeEEecCC------CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc
Q 000085 1955 QHGKASASPAS------GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSs------D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg 2028 (2342)
++|+.+++++. |+.+++|+..++.... .+......|. ..+.+++|+|++++++ ++.||+|+|||+.++
T Consensus 52 pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--~~~~~~~~~~---~~V~~~~~s~d~~~l~-~s~dg~v~lWd~~~~ 125 (357)
T 4g56_B 52 RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--SLCTAGVQTE---AGVTDVAWVSEKGILV-ASDSGAVELWEILEK 125 (357)
T ss_dssp SSSCEEEEEECSSSSSCCEEEEEESSCC---CG--GGCSEEEECS---SCEEEEEEETTTEEEE-EETTSCEEEC-----
T ss_pred CCCCEEEEEcCCCCccccCeEEEEECCCCCcce--eEecccCCCC---CCEEEEEEcCCCCEEE-EECCCEEEEeecccc
Confidence 57888888887 6678889866532211 1111122233 3467799999987664 678999999999987
Q ss_pred ccce----ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC-CceeecCCC
Q 000085 2029 KTLE----TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS-TPANASADK 2103 (2342)
Q Consensus 2029 kll~----tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~-~Las~s~D~ 2103 (2342)
+... ...+|.+.|++++|+|++++|++|+.|++|++||+.++.....+ ..+...+.++++++++. .++++..|+
T Consensus 126 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg 204 (357)
T 4g56_B 126 ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDG 204 (357)
T ss_dssp ---CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTS
T ss_pred ceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCC
Confidence 6543 34589999999999999999999999999999999987655544 45778899999999886 556777765
Q ss_pred c-cccccC--CceE--EecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCC-cE
Q 000085 2104 S-RRRRIE--GPIH--VLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEG-VI 2174 (2342)
Q Consensus 2104 s-~~~~i~--~~l~--~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG-~I 2174 (2342)
. ..|+.. ++.. .+..|...+++++|+|+ +.++++|+.|+.|++||+++++.++.+.+|. +..++|+|+| .+
T Consensus 205 ~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 284 (357)
T 4g56_B 205 RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPF 284 (357)
T ss_dssp CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCC
T ss_pred ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCE
Confidence 4 557653 3333 33457788999999997 5688999999999999999999999998764 7899999998 57
Q ss_pred EEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEEEEeC
Q 000085 2175 MTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSALIGVN 2222 (2342)
Q Consensus 2175 lVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~ 2222 (2342)
++.+..++.|++|++....+... ..|.+.|++++|+| |+.+|++|+.
T Consensus 285 lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 285 LASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp EEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEET
T ss_pred EEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcC
Confidence 78888999999999985554433 46999999999998 8999999973
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=256.03 Aligned_cols=261 Identities=21% Similarity=0.199 Sum_probs=208.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
++.+++++.|++|++|+........ ......+..|. ..+.+++|+|+|++|++|+.|+.|++|+...+........
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~-~~~~~~l~~h~---~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~ 126 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNY-GIPQRALRGHS---HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG 126 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCS-EEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCCccc-ceeeEEEeCCC---CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecC
Confidence 5678999999999999966522111 11112233333 4566799999999999999999999999999888888888
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC--CceeecCCCc-ccccc--CC
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS--TPANASADKS-RRRRI--EG 2111 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~--~Las~s~D~s-~~~~i--~~ 2111 (2342)
|...+.++.+++++.+|++|+.|+.+++||+............+...+..+.+++++. .+++++.++. ..|+. ..
T Consensus 127 ~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~ 206 (340)
T 4aow_A 127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE
T ss_pred CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc
Confidence 9999999999999999999999999999999875544444556677788888887764 3456666654 44555 35
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
....+.+|.+.|++++|+|++++|++|+.||+|++||+++++.+..+..+. +..+++++++.+++. ..++.|++|++.
T Consensus 207 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~iwd~~ 285 (340)
T 4aow_A 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA-ATGPSIKIWDLE 285 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE-EETTEEEEEETT
T ss_pred eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec-cCCCEEEEEECC
Confidence 677889999999999999999999999999999999999999999988764 788999999887654 468999999987
Q ss_pred Cceeeee---------cCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2191 GVLVARA---------KLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2191 G~~L~s~---------~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+...... ...|...|++++|+|||++|++|+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 326 (340)
T 4aow_A 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT 326 (340)
T ss_dssp TTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred CCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence 6443221 1238899999999999999999973
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=257.84 Aligned_cols=257 Identities=14% Similarity=0.192 Sum_probs=212.9
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|+.+++++.|+.+++|+..++. +...+..|.. .+.+++|+|++++|++|+.|+.|++||+.+++.+..+
T Consensus 33 ~~~~~l~s~~~dg~i~iw~~~~~~------~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 33 PNGEWLASSSADKLIKIWGAYDGK------FEKTISGHKL---GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCC------EEEEECCCSS---CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEeeCCCeEEEEeCCCcc------cchhhccCCC---ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 456788999999999999865521 2223333443 4566999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC--C
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE--G 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~--~ 2111 (2342)
.+|...|.+++|+|++++|++|+.|++|++||+.++...... ..+...+..+.+++++..++++..++. ..|+.. .
T Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 999999999999999999999999999999999987654443 456678899999999999999888875 456653 3
Q ss_pred ceEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc----EEEEE-ecCCcEEEEEeCCCeEE
Q 000085 2112 PIHVL-RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDA----HAVSL-SSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2112 ~l~~L-~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~v----ssLSf-SpDG~IlVwdssdGsI~ 2185 (2342)
.+..+ ..|...+.+++|+|+++++++++.||.|++||+++++.+..+.+|.. ....+ .+++.+++.+..++.|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262 (312)
T ss_dssp EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 33433 45677899999999999999999999999999999999999987642 22333 46788899999999999
Q ss_pred EEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2186 SFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+|++....+......|...|.+++|+|++.++++++
T Consensus 263 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 999986665555667999999999999999999886
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=271.65 Aligned_cols=271 Identities=13% Similarity=0.132 Sum_probs=217.1
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCc-------ccc
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGA-------KTL 2031 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tg-------kll 2031 (2342)
+++++.|+.|++|+....... ......+..| ...+.+++|+| ++++|++|+.||+|+|||+.++ +.+
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~--~~~~~~~~~h---~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 124 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRV--DKNVPLVCGH---TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV 124 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEEC--CTTCCCBCCC---SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCS
T ss_pred EEEEcCCCEEEEEECccCCCC--CCCCceEecC---CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCce
Confidence 345788899999986431110 0111122333 34567799999 8999999999999999999987 567
Q ss_pred eecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2032 ETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
..+.+|...|++++|+|++ ++|++|+.|++|++||+.++.
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--------------------------------------- 165 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--------------------------------------- 165 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE---------------------------------------
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC---------------------------------------
Confidence 8899999999999999998 699999999999999998752
Q ss_pred CceEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE-ecCC---cEEEEEecCCcEEEEE---eCC
Q 000085 2111 GPIHVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL-VGVD---AHAVSLSSEGVIMTWN---KLQ 2181 (2342)
Q Consensus 2111 ~~l~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL-~gh~---vssLSfSpDG~IlVwd---ssd 2181 (2342)
.+..+ .+|...|++++|+|++.++++++.||.|++||+++++.+..+ ..|. +..++|+++|.+++.+ ..+
T Consensus 166 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d 244 (402)
T 2aq5_A 166 -AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE 244 (402)
T ss_dssp -EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCC
T ss_pred -ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCC
Confidence 23445 679999999999999999999999999999999999999998 5654 6789999999999988 688
Q ss_pred CeEEEEEeCCc--eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2182 HTLSSFTLNGV--LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2182 GsI~I~dlnG~--~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
+.+++|++... .+......|...|.+++|+|+|+++++++.
T Consensus 245 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~------------------------------------- 287 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK------------------------------------- 287 (402)
T ss_dssp EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET-------------------------------------
T ss_pred ceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc-------------------------------------
Confidence 99999998642 233334457889999999999999975541
Q ss_pred ccCCCCeEEEEECCCCeE-EEEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2260 FDFPSPSICFLDLHTLKV-FHVLK-LGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~-L~tL~-lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.|+.|++||+.+++. +..+. ..|...|++++|+|++.++++ .|+.+++|+...
T Consensus 288 ---~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 288 ---GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp ---TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred ---CCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 267899999998873 33333 125689999999999987764 577999999654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=295.08 Aligned_cols=277 Identities=11% Similarity=0.063 Sum_probs=240.8
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.+.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|+|||+.++......
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~- 93 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF- 93 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-
Confidence 3566999999999999999999999999999999999999999999999999999999999999999999987665544
Q ss_pred cCCCCCCccccccCCCCCceeecCCCc-cccccC---CceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE---GPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~---~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
..+...+.+++|+|++..+++++.++. ..|+.. .....+.+|...|++++|+| ++..+++++.||+|++||+.++
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~ 173 (814)
T 3mkq_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 457788999999999999999888765 456653 44678889999999999999 8899999999999999999988
Q ss_pred eEEEEEecC---CcEEEEEec--CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2153 RLIRRLVGV---DAHAVSLSS--EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2153 klIrsL~gh---~vssLSfSp--DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
.....+..+ .+..++++| +|.+++.+..++.+++|++...........|...|++++|+|+|.++++|+.
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----- 248 (814)
T 3mkq_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE----- 248 (814)
T ss_dssp SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET-----
T ss_pred cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----
Confidence 877777653 478899999 9999999999999999998755555445568999999999999999999873
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCE-EEEEeC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTN-LLVSTA 2306 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~-LaSGSs 2306 (2342)
||.|++||+.+++.+..+. .|...|++++|+|++.. +++++.
T Consensus 249 ------------------------------------dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 249 ------------------------------------DGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp ------------------------------------TSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGGGEEEEEE
T ss_pred ------------------------------------CCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCceEEEEEe
Confidence 6779999999999999998 88889999999999974 355556
Q ss_pred CCcEEEEeCCC
Q 000085 2307 DKQLIVFTDPA 2317 (2342)
Q Consensus 2307 DGsIrVWDi~s 2317 (2342)
|+.+.+|+...
T Consensus 292 ~~~~~~~~~~~ 302 (814)
T 3mkq_A 292 DNGFTVLSLGN 302 (814)
T ss_dssp TTEEEEEECSC
T ss_pred CCCEEEEEcCC
Confidence 77788888543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-24 Score=269.49 Aligned_cols=265 Identities=17% Similarity=0.163 Sum_probs=226.2
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2005 THDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
.+++++|++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++||+.++.....+ ..+...+
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v 206 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTV 206 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCE
T ss_pred EECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCcc
Confidence 3467899999999999999999999999999999999999999988 9999999999999999987655443 4577888
Q ss_pred cccccc--CCCCCceeecCCCc-cccccCC-------------------------ceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2085 GTPGNS--IGSSTPANASADKS-RRRRIEG-------------------------PIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2085 ~svs~S--pDG~~Las~s~D~s-~~~~i~~-------------------------~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
.++.++ +++..+++++.++. ..|+... ....+.+|...|.++ ++++.+++
T Consensus 207 ~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~ 284 (464)
T 3v7d_B 207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVV 284 (464)
T ss_dssp EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEE
T ss_pred EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEE
Confidence 888887 57788888888765 4465432 155778899999887 57799999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCC
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDG 2214 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDG 2214 (2342)
+|+.||+|++||+++++.+..+.+|. +..++++++|..++.+..++.|++|++...........|...|.++.|+ +
T Consensus 285 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~ 362 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D 362 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--S
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--C
Confidence 99999999999999999999998775 7889999999999999999999999997544444555699999999997 6
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf 2294 (2342)
.++++|+. ||.|++||+.++....... |...+..++|
T Consensus 363 ~~l~s~s~-----------------------------------------dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~ 399 (464)
T 3v7d_B 363 KFLVSAAA-----------------------------------------DGSIRGWDANDYSRKFSYH--HTNLSAITTF 399 (464)
T ss_dssp SEEEEEET-----------------------------------------TSEEEEEETTTCCEEEEEE--CTTCCCEEEE
T ss_pred CEEEEEeC-----------------------------------------CCcEEEEECCCCceeeeec--CCCCccEEEE
Confidence 89998872 7889999999988776665 6778889999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2295 NKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2295 SPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
++++.+|++|+ ||.|++||..+..
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTCC
T ss_pred EeCCCEEEEec-CCeEEEEECCCCc
Confidence 99999999998 9999999976653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=304.61 Aligned_cols=342 Identities=7% Similarity=0.030 Sum_probs=241.6
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
+.|..|+.+++++.|++|++|+..++... ..+. +. ..+.+++|+|++++|++|+.||+|++||+.++++.
T Consensus 64 l~fspg~~L~S~s~D~~v~lWd~~~~~~~------~~~~-~~---~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 64 MRFVKGIYLVVINAKDTVYVLSLYSQKVL------TTVF-VP---GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp EEEETTTEEEEEETTCEEEEEETTTCSEE------EEEE-CS---SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEcCCCEEEEEECcCeEEEEECCCCcEE------EEEc-CC---CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 44555888999999999999997653211 1111 22 34678999999999999999999999999987653
Q ss_pred -----------eecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccccccc-----------------CCCC
Q 000085 2032 -----------ETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTI-----------------EPSS 2082 (2342)
Q Consensus 2032 -----------~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~-----------------~~~~ 2082 (2342)
..+.+|.+.|++++|+|+ +..|++|+.|++| +||+.++.....+.. .+..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 345789999999999996 5789999999999 999998765544321 1235
Q ss_pred CCccccccCCCCCceeecCCCc-cccccC--CceEE--e---cC-------------CCCCeEEEEEec----CC-CEEE
Q 000085 2083 GMGTPGNSIGSSTPANASADKS-RRRRIE--GPIHV--L---RG-------------HHREILCCCVSS----DL-GVVV 2136 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s-~~~~i~--~~l~~--L---~G-------------Hs~~Vt~VafSP----Dg-~lLa 2136 (2342)
.+.+++|+|+|..+++++.|+. ..|+.. +++.. + .+ |...|++++|++ ++ .+++
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 6899999999999999998875 557763 23221 2 12 345789999953 32 3555
Q ss_pred EEeCC-----CcEEEEE---------------------------------------------------------------
Q 000085 2137 SCSDS-----SDLLLHS--------------------------------------------------------------- 2148 (2342)
Q Consensus 2137 SGS~D-----GtIrIWD--------------------------------------------------------------- 2148 (2342)
+|+.| +.+.+|+
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence 66443 1444444
Q ss_pred --------CCCCeEEEE-----------------------------------------EecCC--cEEEEEecCCcEEEE
Q 000085 2149 --------IRRGRLIRR-----------------------------------------LVGVD--AHAVSLSSEGVIMTW 2177 (2342)
Q Consensus 2149 --------LrTGklIrs-----------------------------------------L~gh~--vssLSfSpDG~IlVw 2177 (2342)
+.+|..... +.+|. +..++|+|||.+++.
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 333321111 00000 122455788999999
Q ss_pred EeCCCeEEEEEeCCceeee-----e-c-----CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC------
Q 000085 2178 NKLQHTLSSFTLNGVLVAR-----A-K-----LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK------ 2240 (2342)
Q Consensus 2178 dssdGsI~I~dlnG~~L~s-----~-~-----~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~------ 2240 (2342)
+..|++|++|++.+..+.. . . ..|...|++++|+|||++|++|+.|+. .++|++...
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt------V~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD------VVLFKYEVNQFYSVE 526 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC------EEEEEEEECCC----
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE------EEEEEecCccccCcc
Confidence 9999999999987533211 0 0 158899999999999999999998887 345554322
Q ss_pred --------------------------------------------------CCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2241 --------------------------------------------------QSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2241 --------------------------------------------------~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
....++|++++ . ...+..|++|++|
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~----lAsgs~D~tv~lw 601 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F----VGIAYAAGSLMLI 601 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E----EEEEETTSEEEEE
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E----EEEEeCCCcEEEE
Confidence 11223444443 2 1223469999999
Q ss_pred ECCCCeEEEEEe-----cCCCCCeEEEEEe-----cCC---CEEEEEeCCCcEEEEeC
Q 000085 2271 DLHTLKVFHVLK-----LGEGQDITALALN-----KDN---TNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2271 DL~Tgk~L~tL~-----lgHs~~ItsLafS-----PDG---~~LaSGSsDGsIrVWDi 2315 (2342)
|+.+...+.... .+|...|++|+|+ ||| ++|++|+.||+|++|++
T Consensus 602 d~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 602 DRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp ETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 999888765322 1788999999999 886 89999999999999996
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-25 Score=272.10 Aligned_cols=263 Identities=19% Similarity=0.263 Sum_probs=219.7
Q ss_pred EEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCC
Q 000085 2003 SITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS 2082 (2342)
Q Consensus 2003 afSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~ 2082 (2342)
++++++++|++|+.||+|++||+.+++.+..+.+|.+.|+|++| ++++|++|+.||+|++||+.++...... ..+..
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~ 214 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCE 214 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCS
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCC
Confidence 34558999999999999999999999999999999999999999 7899999999999999999988765544 45667
Q ss_pred CCccccccCCCCCceeecCCCc-cccccCC--ce---EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2083 GMGTPGNSIGSSTPANASADKS-RRRRIEG--PI---HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s-~~~~i~~--~l---~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.+.++.++ +..+++++.++. ..|+... .. ..+.+|...|++++| +++++++|+.||+|++||+++++.+.
T Consensus 215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 78888876 457777777765 4566532 22 678899999999999 78899999999999999999999999
Q ss_pred EEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccc
Q 000085 2157 RLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQG 2236 (2342)
Q Consensus 2157 sL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~ 2236 (2342)
.+.+|.....++..++..++.+..++.|++|++...........|...|.+++| ++.++++|+.
T Consensus 291 ~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~-------------- 354 (435)
T 1p22_A 291 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY-------------- 354 (435)
T ss_dssp EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET--------------
T ss_pred EEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC--------------
Confidence 999887555555557889999999999999999744444444569999999999 7899999973
Q ss_pred cCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe---------EEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2237 LNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK---------VFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2237 l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk---------~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
||.|++||+.+++ ++..+. +|...|++++| ++.+|++|+.|
T Consensus 355 ---------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~D 404 (435)
T 1p22_A 355 ---------------------------DGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--DEFQIVSSSHD 404 (435)
T ss_dssp ---------------------------TSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--CSSCEEECCSS
T ss_pred ---------------------------CCcEEEEECCCCCCccccccchheeecc-CCCCCeEEEEe--CCCEEEEEeCC
Confidence 6779999987765 788888 89999999999 78889999999
Q ss_pred CcEEEEeCCCC
Q 000085 2308 KQLIVFTDPAL 2318 (2342)
Q Consensus 2308 GsIrVWDi~sL 2318 (2342)
|.|++||+.+.
T Consensus 405 g~i~iwd~~~~ 415 (435)
T 1p22_A 405 DTILIWDFLND 415 (435)
T ss_dssp SEEEEEC----
T ss_pred CEEEEEECCCC
Confidence 99999996544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=263.98 Aligned_cols=246 Identities=15% Similarity=0.094 Sum_probs=205.3
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc------cceecccCCCCeEEEEecCC----C---CEEEEEeCCCce
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK------TLETASGHCAPVTCLALSSD----S---NFLVTGSQDTTI 2062 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk------ll~tL~GHt~~VtcLAfSPD----G---~~LaSGS~DGTV 2062 (2342)
...+.+++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+|+ + ++|++|+.|++|
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 34566799998 899999999999999999988 78888999999999999999 9 999999999999
Q ss_pred EEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC-----CCCeEEEEEe----cCCC
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH-----HREILCCCVS----SDLG 2133 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH-----s~~Vt~VafS----PDg~ 2133 (2342)
++||+.++.... ......+.+| ...|++++|+ |++.
T Consensus 94 ~iw~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 94 LFYRITREDETK-----------------------------------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp EEEEEEECTTTC-----------------------------------CEEEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred EEEEccCCcccc-----------------------------------cccceeecccccccCCCcEEEEEEeeccCCCCc
Confidence 999998753200 0114456677 5899999999 9999
Q ss_pred E-EEEEeCCCcEEEEECCC------CeEEE-----EEec-------C--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCc
Q 000085 2134 V-VVSCSDSSDLLLHSIRR------GRLIR-----RLVG-------V--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV 2192 (2342)
Q Consensus 2134 l-LaSGS~DGtIrIWDLrT------GklIr-----sL~g-------h--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~ 2192 (2342)
+ +++|+.||.|++||+++ ++.+. .+.+ | .+..++|+++| +++.+..++.+++|++...
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 9 99999999999999998 66655 6642 3 47899999999 9999999999999999754
Q ss_pred eeeeecCC---C---CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2193 LVARAKLP---L---SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2193 ~L~s~~~~---H---s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
........ | ...|.+++|+|++++|++|+.++. .+.
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~--------------------------------------~g~ 259 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--------------------------------------FGC 259 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT--------------------------------------EEE
T ss_pred ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC--------------------------------------Cce
Confidence 44444444 7 899999999999999999873211 178
Q ss_pred EEEEECCCCeEEEEEecC-------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2267 ICFLDLHTLKVFHVLKLG-------------EGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2267 IrIWDL~Tgk~L~tL~lg-------------Hs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|++||+.+++.+..+. + |...|++++|+|++++|++|+.||.|++||....
T Consensus 260 i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 260 ITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp EEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred EEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999998 6 9999999999999999999999999999997654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=284.78 Aligned_cols=238 Identities=20% Similarity=0.245 Sum_probs=201.0
Q ss_pred ceeEEEEEcCCC-CEEEEEEcCCcEEEEecCCc-----ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1997 RSSAVVSITHDK-EIITGGHVDGSIKLLTSDGA-----KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1997 ~Svt~VafSpDG-klLASGS~DGsIrVWDl~tg-----kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
..|.+++|++++ ++|++|+.|++|+||++.+. .....+.+|.+.|++++|+|++++|+||+.|++|+|||+.++
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~ 462 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 345679999875 69999999999999998764 335678999999999999999999999999999999999874
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
. ....+.+|...|++++|+|++++++||+.|++|++||+.
T Consensus 463 ~----------------------------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 463 V----------------------------------------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp E----------------------------------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred c----------------------------------------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 2 244578999999999999999999999999999999986
Q ss_pred CCeEEEEEe---cCC--cEEEEEecCC--cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2151 RGRLIRRLV---GVD--AHAVSLSSEG--VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2151 TGklIrsL~---gh~--vssLSfSpDG--~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
......... +|. +.+++|++++ ..++.+..++.|++|++....+......|.+.|++++|+|+|+++++|+.
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~- 581 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK- 581 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-
Confidence 654433322 233 7899999987 57888899999999999876666666679999999999999999999973
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
||.|++||+.+++.+..+. +...|.+++|+|++.+|++
T Consensus 582 ----------------------------------------Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 582 ----------------------------------------DGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCA 619 (694)
T ss_dssp ----------------------------------------TSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEE
T ss_pred ----------------------------------------CCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEE
Confidence 6789999999999887766 5568999999999987776
Q ss_pred EeCCCcEEEEeCCCC
Q 000085 2304 STADKQLIVFTDPAL 2318 (2342)
Q Consensus 2304 GSsDGsIrVWDi~sL 2318 (2342)
++ |+.|+|||....
T Consensus 620 ~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 620 AT-EHGIKIWDLESK 633 (694)
T ss_dssp EE-TTEEEEEETTTT
T ss_pred Ec-CCCEEEEECCCC
Confidence 65 566999997654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=255.19 Aligned_cols=269 Identities=13% Similarity=0.039 Sum_probs=220.4
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---cceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEec-cCC
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK---TLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRI-HRA 2070 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk---ll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl-~tg 2070 (2342)
...+.+++|+|++++|++|+.||.|+||++.+++ ....+.+|...|++++|+|+++ +|++|+.||+|++||+ .++
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 3456779999999999999999999999998876 3455668999999999999999 9999999999999999 776
Q ss_pred ccccccccC--CCCCCccccccCCCCCceeecCCCc-cccccC-----------CceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2071 FTSRTGTIE--PSSGMGTPGNSIGSSTPANASADKS-RRRRIE-----------GPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2071 ~~i~t~~~~--~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~-----------~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
.. ..... +...+.++.+++ +..++++..++. ..|+.. .++..+. |...|++++|++++ ++
T Consensus 91 ~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~ 164 (342)
T 1yfq_A 91 SF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI 164 (342)
T ss_dssp SE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred ce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence 43 22344 788899999999 888888888765 445542 3344454 88999999999887 99
Q ss_pred EEeCCCcEEEEECCC-CeE--EEEEecC--CcEEEEEec-CCcEEEEEeCCCeEEEEEeCCc------eeeeecCCCC--
Q 000085 2137 SCSDSSDLLLHSIRR-GRL--IRRLVGV--DAHAVSLSS-EGVIMTWNKLQHTLSSFTLNGV------LVARAKLPLS-- 2202 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrT-Gkl--IrsL~gh--~vssLSfSp-DG~IlVwdssdGsI~I~dlnG~------~L~s~~~~Hs-- 2202 (2342)
+++.||.|++||+++ +.. ......+ .+..++++| +|..++.+..+|.+++|+++.. ........|.
T Consensus 165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T 1yfq_A 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc
Confidence 999999999999998 543 2223222 478999999 9999999999999999998643 2222222354
Q ss_pred -------CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2203 -------GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2203 -------~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
..|++++|+|+|++|++|+. ||.|++||+.++
T Consensus 245 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------------------------------------dg~i~vwd~~~~ 283 (342)
T 1yfq_A 245 LKDTNLAYPVNSIEFSPRHKFLYTAGS-----------------------------------------DGIISCWNLQTR 283 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEET-----------------------------------------TSCEEEEETTTT
T ss_pred ccccccceeEEEEEEcCCCCEEEEecC-----------------------------------------CceEEEEcCccH
Confidence 49999999999999999873 677999999999
Q ss_pred eEEEEEecCC-CCCeEEEEEecCCCEEEEEeCCCc-EEEEe
Q 000085 2276 KVFHVLKLGE-GQDITALALNKDNTNLLVSTADKQ-LIVFT 2314 (2342)
Q Consensus 2276 k~L~tL~lgH-s~~ItsLafSPDG~~LaSGSsDGs-IrVWD 2314 (2342)
+.+..+. +| ...|++++ |++++|++|+.||. .+.|.
T Consensus 284 ~~~~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 284 KKIKNFA-KFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECC-CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred hHhhhhh-cccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9999988 66 99999999 99999999999998 54444
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=256.89 Aligned_cols=260 Identities=13% Similarity=0.044 Sum_probs=211.3
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce--
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-- 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~-- 2032 (2342)
++|+.+++++.|+.+++|+..++. +.....+..|. ..+.+++|+|++++|++|+.||.|++||+.+++...
T Consensus 18 ~~~~~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 90 (372)
T 1k8k_C 18 KDRTQIAICPNNHEVHIYEKSGNK----WVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 90 (372)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTE----EEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCc----EEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE
Confidence 567888999999999999865521 11222333333 456679999999999999999999999998886543
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc---ccccccCCCCCCccccccCCCCCceeecCCCc-cccc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT---SRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRR 2108 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~---i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~ 2108 (2342)
.+.+|...|++++|+|++++|++|+.|++|++||+..... .......+...+.++.++|++..++++..++. ..|+
T Consensus 91 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 91 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 3477999999999999999999999999999999998653 22224556788999999999999998887764 4566
Q ss_pred c--------------------CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEE
Q 000085 2109 I--------------------EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAV 2166 (2342)
Q Consensus 2109 i--------------------~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssL 2166 (2342)
. ...+..+.+|...|++++|+|++.++++++.||.|++||+++++.+..+..|. +..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 171 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 250 (372)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred cccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE
Confidence 3 45677888999999999999999999999999999999999999999998874 7899
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeCC--cee---------------------------------------eeecCCCCCCe
Q 000085 2167 SLSSEGVIMTWNKLQHTLSSFTLNG--VLV---------------------------------------ARAKLPLSGSI 2205 (2342)
Q Consensus 2167 SfSpDG~IlVwdssdGsI~I~dlnG--~~L---------------------------------------~s~~~~Hs~~I 2205 (2342)
+|+++|.+++.+ .++.+++|++.. ... ......|...|
T Consensus 251 ~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 251 TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 999999988877 889999999865 210 11123599999
Q ss_pred EEEEEc-cCC---CEEEEEeC
Q 000085 2206 GCMEIS-LDG---HSALIGVN 2222 (2342)
Q Consensus 2206 tsLafS-PDG---k~LaSGS~ 2222 (2342)
++++|+ ++| .+|++|+.
T Consensus 330 ~~~~~~~~~g~~~~~l~s~~~ 350 (372)
T 1k8k_C 330 SQISVLSGGKAKCSQFCTTGM 350 (372)
T ss_dssp EEEEEEESTTTSCSEEEEEET
T ss_pred ceeEEecCCCcceeeEEEecC
Confidence 999966 677 99999973
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=257.86 Aligned_cols=242 Identities=14% Similarity=0.112 Sum_probs=200.9
Q ss_pred cCcceeEEEEEcCC----CCEEEEEEcCCcEEEEecCCcccceeccc-----CCCCeEEEEecCC----CCEEEEEeCCC
Q 000085 1994 SGIRSSAVVSITHD----KEIITGGHVDGSIKLLTSDGAKTLETASG-----HCAPVTCLALSSD----SNFLVTGSQDT 2060 (2342)
Q Consensus 1994 ~gI~Svt~VafSpD----GklLASGS~DGsIrVWDl~tgkll~tL~G-----Ht~~VtcLAfSPD----G~~LaSGS~DG 2060 (2342)
++...+.+++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|+.||
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 34456777999984 34666666678999999998887776654 5578999999999 67999999999
Q ss_pred ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEe
Q 000085 2061 TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCS 2139 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS 2139 (2342)
+|++||+.++ ..+..+.+|...|++++|+| ++.++++|+
T Consensus 96 ~i~v~d~~~~----------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 96 IIRIINPITM----------------------------------------QCIKHYVGHGNAINELKFHPRDPNLLLSVS 135 (366)
T ss_dssp EEEEECTTTC----------------------------------------CEEEEEESCCSCEEEEEECSSCTTEEEEEE
T ss_pred EEEEEEchhc----------------------------------------eEeeeecCCCCcEEEEEECCCCCCEEEEEe
Confidence 9999999874 23456678999999999999 899999999
Q ss_pred CCCcEEEEECCCCeEEEEE---ecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee-----------------
Q 000085 2140 DSSDLLLHSIRRGRLIRRL---VGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA----------------- 2197 (2342)
Q Consensus 2140 ~DGtIrIWDLrTGklIrsL---~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~----------------- 2197 (2342)
.||+|++||+++++.+..+ ..| .+..++|+++|..++.+..++.+++|++........
T Consensus 136 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 9999999999999999998 444 478999999999999999999999999874322111
Q ss_pred -----------cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe
Q 000085 2198 -----------KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS 2266 (2342)
Q Consensus 2198 -----------~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs 2266 (2342)
...|...|.+++|+ ++++++++. |+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-----------------------------------------d~~ 252 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC-----------------------------------------ENA 252 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS-----------------------------------------SSE
T ss_pred ceeeccCccccccCCcceEEEEEEc--CCEEEEEec-----------------------------------------CCE
Confidence 11288999999998 778988863 677
Q ss_pred EEEEECCCCe--------------EEEEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCC
Q 000085 2267 ICFLDLHTLK--------------VFHVLKLGEGQDITALALNKD--NTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2267 IrIWDL~Tgk--------------~L~tL~lgHs~~ItsLafSPD--G~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
|++||+.+++ .+..+. +|...|++++|+|+ +++|++|+.||.|++|+.....
T Consensus 253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 253 IVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 8888887763 377777 89999999999999 9999999999999999977653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=255.89 Aligned_cols=268 Identities=14% Similarity=0.120 Sum_probs=209.4
Q ss_pred CcceeEEEEEcCC---CCEEEEEEcCCcEEEEecCC-cccc-eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 1995 GIRSSAVVSITHD---KEIITGGHVDGSIKLLTSDG-AKTL-ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1995 gI~Svt~VafSpD---GklLASGS~DGsIrVWDl~t-gkll-~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
+-..+.+++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|.+.|++++|+|++++|++|+.||+|++||+.+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 3445677999999 59999999999999999987 5554 78889999999999999999999999999999999987
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEE--ecCCCEEEEEeCCCcEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCV--SSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Vaf--SPDg~lLaSGS~DGtIrIW 2147 (2342)
+.. ..+.+|...|++++| ++++.++++++.||.|++|
T Consensus 118 ~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 118 NQA-----------------------------------------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp TEE-----------------------------------------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred CCc-----------------------------------------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 421 224569999999999 8899999999999999999
Q ss_pred ECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce--eeeecCCCCCCeEEEEEccCCCE----EEEEe
Q 000085 2148 SIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL--VARAKLPLSGSIGCMEISLDGHS----ALIGV 2221 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~--L~s~~~~Hs~~ItsLafSPDGk~----LaSGS 2221 (2342)
|+++++.+..+..+. ..+++...+..++....++.+.+|++.... .......+...+.++.+.+++.. +++|+
T Consensus 157 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 157 DTRSSNPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp CSSCSSCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred ECCCCcEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 999999988888765 344444445577777788889999986432 22222235667778877776655 88898
Q ss_pred CCCCCCCCCcccccccCCCC--------------------------CCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2222 NSSSTNNGSYDNIQGLNSKQ--------------------------SGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2222 ~DGs~d~~i~d~Lw~l~~~~--------------------------~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
.++. ..+|++.... ...+.|+++... ...+..||.|++||+.++
T Consensus 236 ~dg~------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 236 IEGR------VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT----LATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp TTSE------EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC----EEEEETTSCEEEEETTTT
T ss_pred CCCc------EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE----EEEEccCCeEEEEECCCC
Confidence 7776 3445544331 222344444322 222346999999999999
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+++..+. +|...|++++|+|+|++|++|+.|+..+.|+.
T Consensus 306 ~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 306 TKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEEECC-CCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred cEEEEec-CCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 9999998 89999999999999999999999986666553
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=248.48 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=213.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++|+.+++++.|+.+++|+..++. ....+..|. ..+.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 42 ~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 42 KEGDLLFSCSKDSSASVWYSLNGE------RLGTLDGHT---GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp TTSCEEEEEESSSCEEEEETTTCC------EEEEECCCS---SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCch------hhhhhhhcC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 356788899999999999976532 112233333 34667999999999999999999999999999998888
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCC-----CceEEEeccCCcccccc----------ccCCCC--CCccccccCCCCCce
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQD-----TTILLWRIHRAFTSRTG----------TIEPSS--GMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~D-----GTVrVWDl~tg~~i~t~----------~~~~~~--~V~svs~SpDG~~La 2097 (2342)
. |...|.+++|+|++++|++++.+ +.|.+||+......... ...+.. .+.++++++++..++
T Consensus 113 ~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII 191 (369)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEE
T ss_pred e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEE
Confidence 7 88999999999999999999999 99999999876533222 112222 788899999999999
Q ss_pred eecCCCc-cccccC---CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCC
Q 000085 2098 NASADKS-RRRRIE---GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEG 2172 (2342)
Q Consensus 2098 s~s~D~s-~~~~i~---~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG 2172 (2342)
++..++. ..|+.. ..+..+.+|...|.+++|+|++.++++++.||.|++||+++++.+..+... .+..++++++|
T Consensus 192 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (369)
T 3zwl_B 192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLK 271 (369)
T ss_dssp EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSS
T ss_pred EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCC
Confidence 8888764 456653 457788899999999999999999999999999999999999999888754 47899999999
Q ss_pred cEEEEEeCCC--------------eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2173 VIMTWNKLQH--------------TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2173 ~IlVwdssdG--------------sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..++.+..++ .+++|+............|...|++++|+|+|++|++|+.
T Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 272 EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp SEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 9999988777 7899998754444445569999999999999999999973
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=258.93 Aligned_cols=248 Identities=17% Similarity=0.246 Sum_probs=202.8
Q ss_pred EEEEcCCCC-EEEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCcccc
Q 000085 2001 VVSITHDKE-IITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2001 ~VafSpDGk-lLASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+++++|+.. ++++|+.||.|+||++... +.+..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++....
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 377888876 4556889999999998653 34567889999999999999 99999999999999999998753211
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCe
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
....++..+.+|...|++++|+|++ .++++|+.||+|++||+++++
T Consensus 119 ---------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 119 ---------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp ---------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred ---------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 1124566788999999999999998 699999999999999999999
Q ss_pred EEEEE--ecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec-CCCCCC-eEEEEEccCCCEEEEEeCCCCCC
Q 000085 2154 LIRRL--VGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK-LPLSGS-IGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2154 lIrsL--~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~-~~Hs~~-ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
.+..+ ..|. +..++|+++|..++.+..++.+++|++......... ..|.+. +.++.|+|+|.++++|....
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--- 242 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM--- 242 (402)
T ss_dssp EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT---
T ss_pred ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC---
Confidence 99999 5554 789999999999999999999999999754433333 457665 99999999999999884211
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE-EEEEecCCCCCeEEEEEecCCCEEEE-Ee
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV-FHVLKLGEGQDITALALNKDNTNLLV-ST 2305 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~-L~tL~lgHs~~ItsLafSPDG~~LaS-GS 2305 (2342)
.|+.|++||+.+++. +......|...|.+++|+|++.+|++ |+
T Consensus 243 -----------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~ 287 (402)
T 2aq5_A 243 -----------------------------------SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK 287 (402)
T ss_dssp -----------------------------------CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET
T ss_pred -----------------------------------CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc
Confidence 278899999988654 44444467888999999999999975 55
Q ss_pred CCCcEEEEeCCCCC
Q 000085 2306 ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2306 sDGsIrVWDi~sLs 2319 (2342)
.||.|++|+.....
T Consensus 288 ~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 288 GDSSIRYFEITSEA 301 (402)
T ss_dssp TCSCEEEEEECSST
T ss_pred CCCeEEEEEecCCC
Confidence 79999999976553
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-23 Score=256.05 Aligned_cols=264 Identities=19% Similarity=0.215 Sum_probs=215.0
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
++++|++|++|+.||+|++||+.+++.+..+.+|.+.|++++|+ +++|++|+.||+|++||+.++...... ..+...
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~ 201 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-YGHTST 201 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSC
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCc
Confidence 55578999999999999999999999999999999999999997 679999999999999999987655443 356666
Q ss_pred CccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 000085 2084 MGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g 2160 (2342)
+.++.++ +..+++++.++. ..|+. ...+..+.+|...|++++| ++.++++|+.||.|++||+++++.+..+.+
T Consensus 202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 277 (445)
T 2ovr_B 202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG 277 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred EEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence 7777664 566777777764 44654 4567788889999999988 678899999999999999999999988887
Q ss_pred CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC
Q 000085 2161 VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240 (2342)
Q Consensus 2161 h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~ 2240 (2342)
|.....++..+|..++.+..++.+++|++...........|...+.++.++ +.++++|+.
T Consensus 278 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~------------------ 337 (445)
T 2ovr_B 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA------------------ 337 (445)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET------------------
T ss_pred CCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC------------------
Confidence 764444444488888888889999999986444444445588888888774 668888862
Q ss_pred CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL--GEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2241 ~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l--gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
||.|++||+.+++.+..+.. .|...|++++|+ +.+|++|+.||.|++||....
T Consensus 338 -----------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 338 -----------------------DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp -----------------------TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred -----------------------CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 67899999999999999872 288899999995 679999999999999997655
Q ss_pred C
Q 000085 2319 S 2319 (2342)
Q Consensus 2319 s 2319 (2342)
.
T Consensus 393 ~ 393 (445)
T 2ovr_B 393 E 393 (445)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=261.68 Aligned_cols=244 Identities=14% Similarity=0.162 Sum_probs=202.1
Q ss_pred eeEEEEEcCC-CCEEEEEEcCCcEEEEecCC----------cccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEE
Q 000085 1998 SSAVVSITHD-KEIITGGHVDGSIKLLTSDG----------AKTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLW 2065 (2342)
Q Consensus 1998 Svt~VafSpD-GklLASGS~DGsIrVWDl~t----------gkll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVW 2065 (2342)
.+++++|+|+ +.+|++|+.||.|+||++.+ .+.+..+.+|...|++++|+|++. +|++|+.||+|++|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 209 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEE
Confidence 4566999998 67999999999999999987 577788899999999999999988 99999999999999
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcE
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDL 2144 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtI 2144 (2342)
|+..+..... ...+...+.+|...|.+++|+| ++.++++++.||.|
T Consensus 210 d~~~~~~~~~---------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 210 DINATPKEHR---------------------------------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp ETTSCCBGGG---------------------------------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred eCCCCCCCCc---------------------------------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence 9987421100 0122456678999999999999 68899999999999
Q ss_pred EEEECCCC---eEEEEEecCC--cEEEEEecCCc-EEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCC-E
Q 000085 2145 LLHSIRRG---RLIRRLVGVD--AHAVSLSSEGV-IMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGH-S 2216 (2342)
Q Consensus 2145 rIWDLrTG---klIrsL~gh~--vssLSfSpDG~-IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk-~ 2216 (2342)
++||++++ ..+..+..|. +..++|+|++. +++.+..+|.|++|++.. .........|...|++++|+|++. +
T Consensus 257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence 99999987 5667776654 78999999997 788889999999999974 222223334899999999999996 5
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC--------------CeEEEEEe
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT--------------LKVFHVLK 2282 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T--------------gk~L~tL~ 2282 (2342)
+++|+. |+.|+|||+.. .+.+..+.
T Consensus 337 l~s~~~-----------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (430)
T 2xyi_A 337 LASSGT-----------------------------------------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375 (430)
T ss_dssp EEEEET-----------------------------------------TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC
T ss_pred EEEEeC-----------------------------------------CCcEEEEeCCCCccccCccccccCCcceEEEcC
Confidence 777753 56788888876 35666666
Q ss_pred cCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCC
Q 000085 2283 LGEGQDITALALNKDNT-NLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~-~LaSGSsDGsIrVWDi~ 2316 (2342)
+|...|++++|+|++. +|++++.||.|+||++.
T Consensus 376 -~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 376 -GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp -CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred -CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 8999999999999999 89999999999999954
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=261.07 Aligned_cols=228 Identities=9% Similarity=0.012 Sum_probs=176.4
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---c
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK---T 2030 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk---l 2030 (2342)
.++|+.+++++.|+.+++|+..++ .+.....+..|. ..+.+++|+|++++|++|+.|++|++||+.+++ .
T Consensus 20 s~~g~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 20 NSQRTEFVTTTATNQVELYEQDGN----GWKHARTFSDHD---KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CSSSSEEECCCSSSCBCEEEEETT----EEEECCCBCCCS---SCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred CCCCCEEEEecCCCEEEEEEccCC----ceEEEEEEecCC---ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 356888999999999999997652 112222333343 446679999999999999999999999999887 6
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc---ccccccCCCCCCccccccCCCCCceeecCCCc-cc
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT---SRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RR 2106 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~---i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~ 2106 (2342)
...+.+|...|++++|+|++++|++|+.|++|++||+.++.. .......+...+.+++++|++..+++++.++. ..
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i 172 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence 677889999999999999999999999999999999998753 33333337889999999999999999888864 45
Q ss_pred ccc--------------------CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE----EEEEecCC
Q 000085 2107 RRI--------------------EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL----IRRLVGVD 2162 (2342)
Q Consensus 2107 ~~i--------------------~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl----IrsL~gh~ 2162 (2342)
|+. ..++..+ +|...|++++|+|+++++++|+.||+|++||+++++. +..+.+|.
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 251 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ 251 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC
Confidence 665 2344555 9999999999999999999999999999999999887 77777765
Q ss_pred --cEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2163 --AHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2163 --vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
+..++|+++|.+++.+..++.+ +|...
T Consensus 252 ~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 252 LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 7899999999998888655554 66654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=277.31 Aligned_cols=241 Identities=15% Similarity=0.046 Sum_probs=183.6
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCcccc----eecccCCCCeEEEEecCC------CCEEEEEeCCCceEEEeccCCcccc
Q 000085 2005 THDKEIITGGHVDGSIKLLTSDGAKTL----ETASGHCAPVTCLALSSD------SNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2005 SpDGklLASGS~DGsIrVWDl~tgkll----~tL~GHt~~VtcLAfSPD------G~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+|+++++++|+.|++|+|||+.+++.. .++.+|.+.|++++|+|+ +.+|+||+.||+|+|||+.++....
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 688999999999999999999887653 456778899999999996 5799999999999999997643210
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR- 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk- 2153 (2342)
.. ......+...+.+|...|++++|+++ ..|++|+.||+|++||++++.
T Consensus 250 ~~-----------------------------~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~ 299 (524)
T 2j04_B 250 HV-----------------------------FKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV 299 (524)
T ss_dssp SE-----------------------------EECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS
T ss_pred cc-----------------------------ceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC
Confidence 00 00112345678899999999999986 489999999999999999874
Q ss_pred EEEEEecCC--cEEE--EEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCC--CCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2154 LIRRLVGVD--AHAV--SLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLS--GSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2154 lIrsL~gh~--vssL--SfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs--~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
....+.+|. +..+ +++++| .+++.+..|+++++|++...........|. ..|.+++|+|+++.+++++.
T Consensus 300 ~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~---- 375 (524)
T 2j04_B 300 PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG---- 375 (524)
T ss_dssp CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECS----
T ss_pred ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCC----
Confidence 445677775 6666 568888 899999999999999986422211112233 35889999999999998752
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
|++|++||+.++.++.++. +|...|++|+|+|+|++|++|+.
T Consensus 376 -------------------------------------d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 376 -------------------------------------ASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp -------------------------------------SSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEET
T ss_pred -------------------------------------CCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEEC
Confidence 6789999999999888888 89999999999999999999999
Q ss_pred CCcEEEEeCCC
Q 000085 2307 DKQLIVFTDPA 2317 (2342)
Q Consensus 2307 DGsIrVWDi~s 2317 (2342)
||+|++|+...
T Consensus 418 Dgtv~lwd~~~ 428 (524)
T 2j04_B 418 DGSLIITNAAR 428 (524)
T ss_dssp TTEEECCBSCS
T ss_pred CCEEEEEechH
Confidence 99999999643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-23 Score=241.10 Aligned_cols=271 Identities=16% Similarity=0.168 Sum_probs=216.4
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc---c
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA---K 2029 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg---k 2029 (2342)
.|+++..+++++.|+.+++|+..++ .....+..|. ..+.+++|+|++++|++|+.||.|++|++... +
T Consensus 25 ~~~~~~~l~s~~~dg~v~vw~~~~~------~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 95 (313)
T 3odt_A 25 VAVDDSKVASVSRDGTVRLWSKDDQ------WLGTVVYTGQ---GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED 95 (313)
T ss_dssp EEEETTEEEEEETTSEEEEEEESSS------EEEEEEEECS---SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred EecCCCEEEEEEcCCcEEEEECCCC------EEEEEeecCC---ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC
Confidence 3467888999999999999996541 1122233333 34667999999999999999999999998754 5
Q ss_pred cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccC-CCCCceeecCCCc-ccc
Q 000085 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSI-GSSTPANASADKS-RRR 2107 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~Sp-DG~~Las~s~D~s-~~~ 2107 (2342)
.+..+.+|...|++++| ++++|++|+.|++|++|| .+..... ...+...+..+.+.+ ++..++++..++. ..|
T Consensus 96 ~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 96 PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYN-LQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEE-EECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEe-cccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 67788999999999999 578999999999999999 2222222 345677788888887 8888888887765 568
Q ss_pred ccCCceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeE
Q 000085 2108 RIEGPIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2108 ~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI 2184 (2342)
+.......+.. |...|.+++|+|++. +++++.||.|++||+++++.+..+.+|. +..++++++|. ++.+..++.+
T Consensus 171 d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v 248 (313)
T 3odt_A 171 QNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTV 248 (313)
T ss_dssp ETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEE
T ss_pred ecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEE
Confidence 87777888888 999999999999988 9999999999999999999999998765 78999999995 6777889999
Q ss_pred EEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2185 SSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2185 ~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
++|++...........|...|++++|+|+|+++ +++. |
T Consensus 249 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~-----------------------------------------d 286 (313)
T 3odt_A 249 RIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSS-----------------------------------------D 286 (313)
T ss_dssp EEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEET-----------------------------------------T
T ss_pred EEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeC-----------------------------------------C
Confidence 999987544444445588899999999999955 4542 6
Q ss_pred CeEEEEECCCCeEEEEE
Q 000085 2265 PSICFLDLHTLKVFHVL 2281 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL 2281 (2342)
|.|++||+.+++.+...
T Consensus 287 g~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 287 NLVRIFSQEKSRWASED 303 (313)
T ss_dssp SCEEEEESCGGGCCC--
T ss_pred CcEEEEeCCCCceeehh
Confidence 78999999887755443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.4e-23 Score=241.99 Aligned_cols=223 Identities=14% Similarity=0.132 Sum_probs=179.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcc--c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAK--T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgk--l 2030 (2342)
++|+.+++++.|+++++|+..+.. ......+..|.. .+.+++|+++ +++|++|+.|++|+|||+.+++ .
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~----~~~~~~l~gH~~---~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGET----HKLIDTLTGHEG---PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSC----BCCCEEECCCSS---CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred CCCCEEEEEeCCCEEEEEecCCCC----cEEEEEEccccC---CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence 568889999999999999865311 112233444544 4566999864 8999999999999999999874 5
Q ss_pred ceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2031 LETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+.+...
T Consensus 92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~------------------------------------ 135 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT------------------------------------ 135 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC------------------------------------
T ss_pred EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc------------------------------------
Confidence 6678899999999999997 89999999999999999976311
Q ss_pred cCCceEEecCCCCCeEEEEEecC-------------CCEEEEEeCCCcEEEEECCCCe----EEEEEecCC--cEEEEEe
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSD-------------LGVVVSCSDSSDLLLHSIRRGR----LIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPD-------------g~lLaSGS~DGtIrIWDLrTGk----lIrsL~gh~--vssLSfS 2169 (2342)
.....+.+|...|++++|+|+ +++|++|+.||+|++||++++. ....+.+|. +..++|+
T Consensus 136 --~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 136 --TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp --BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred --eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC
Confidence 012346789999999999986 5799999999999999998876 667788775 7899999
Q ss_pred cCC---cEEEEEeCCCeEEEEEeCCce---eeeec--CCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2170 SEG---VIMTWNKLQHTLSSFTLNGVL---VARAK--LPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2170 pDG---~IlVwdssdGsI~I~dlnG~~---L~s~~--~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|++ .+++.+..++.+++|++.... ..... ..|...|.+++|+|+|++|++|+.
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 995 889999999999999987421 11112 247889999999999999999973
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-23 Score=249.01 Aligned_cols=316 Identities=13% Similarity=0.066 Sum_probs=207.9
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceec----cccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCccc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAF----ASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~----hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkl 2030 (2342)
++..+++++.|+.+++|+..++.............. ...+...+.+++|+| ++++|++|+.||.|++||+.+++.
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 577889999999999999776433222111100000 012445677799999 777999999999999999999988
Q ss_pred ceecccCCCCeEEEEecCC---CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC-ceeecCCCc-c
Q 000085 2031 LETASGHCAPVTCLALSSD---SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST-PANASADKS-R 2105 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD---G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~-Las~s~D~s-~ 2105 (2342)
...+. |...+.+++|++. +.++++|+.|+.|++||+.++...... ..+...+.++.++|++.. ++++..++. .
T Consensus 135 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 135 ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 87776 7888999999984 459999999999999999987655443 457788999999999996 677777764 4
Q ss_pred ccccCC---ceEEe---------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-----
Q 000085 2106 RRRIEG---PIHVL---------------RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD----- 2162 (2342)
Q Consensus 2106 ~~~i~~---~l~~L---------------~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~----- 2162 (2342)
.|+... +...+ .+|...|++++|+|++.++++++.||.|++||+++++....+..+.
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 292 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK 292 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc
Confidence 565532 23333 6799999999999999999999999999999999987655443321
Q ss_pred --cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC
Q 000085 2163 --AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240 (2342)
Q Consensus 2163 --vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~ 2240 (2342)
.........+..+++...++.+++|++...........|...|++++|+|+|++|++|+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------------------ 354 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR------------------ 354 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET------------------
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC------------------
Confidence 122222333444555566788888988654444445569999999999999999999973
Q ss_pred CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 000085 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK-DNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2241 ~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP-DG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
||.|++||+.+++.+.... .+. ....+.+ +...+.+++.|+.+++|+.+..
T Consensus 355 -----------------------dg~i~iw~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 406 (408)
T 4a11_B 355 -----------------------DCNILAWVPSLYEPVPDDD-ETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHPQF 406 (408)
T ss_dssp -----------------------TSCEEEEEECC---------------------------------------------
T ss_pred -----------------------CCeEEEEeCCCCCccCCCC-ceE---eccccccccceeecccCccCceeecCCccc
Confidence 6779999999988776554 221 1223333 3344567788999999997654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=283.46 Aligned_cols=241 Identities=11% Similarity=0.069 Sum_probs=203.0
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecC--CcccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCcc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSD--GAKTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~--tgkll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
..+.+++|+|+|++|++|+.||+|+|||+. +++.+.++.+|.+.|++++|+++ +++|++|+.||+|++||+.++..
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 456679999999999999999999999998 56778889999999999999988 99999999999999999987421
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD--LGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD--g~lLaSGS~DGtIrIWDLr 2150 (2342)
.....+.+|...|++++|+|+ +..+++|+.||+|++||++
T Consensus 90 --------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 90 --------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp --------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred --------------------------------------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 134566789999999999999 9999999999999999998
Q ss_pred CCe--EEEEEecC--CcEEEEEec-------------CCcEEEEEeCCCeEEEEEeCCc----eeeeecCCCCCCeEEEE
Q 000085 2151 RGR--LIRRLVGV--DAHAVSLSS-------------EGVIMTWNKLQHTLSSFTLNGV----LVARAKLPLSGSIGCME 2209 (2342)
Q Consensus 2151 TGk--lIrsL~gh--~vssLSfSp-------------DG~IlVwdssdGsI~I~dlnG~----~L~s~~~~Hs~~ItsLa 2209 (2342)
++. ....+.+| .+..++++| +|..++.+..+|.|++|++... ........|...|++++
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence 873 33444454 378899999 5899999999999999998643 33334445999999999
Q ss_pred EccC---CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe-----EEEEE
Q 000085 2210 ISLD---GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK-----VFHVL 2281 (2342)
Q Consensus 2210 fSPD---Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk-----~L~tL 2281 (2342)
|+|+ |.++++|+. ||.|++||+.+++ .+...
T Consensus 212 ~sp~~~~~~~l~s~s~-----------------------------------------Dg~I~iwd~~~~~~~~~~~~~~~ 250 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQ-----------------------------------------DRTCIIWTQDNEQGPWKKTLLKE 250 (753)
T ss_dssp ECCCCSSSEEEEEEES-----------------------------------------SSCEEEEEESSSSSCCBCCBSSS
T ss_pred eccCCCCCCEEEEEec-----------------------------------------CCEEEEecCCCCCCcceeEEecc
Confidence 9999 899999873 6779999998763 12222
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2282 KLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2282 ~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
. +|...|++++|+|+|++|++|+.||.|++|+...
T Consensus 251 ~-~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 251 E-KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp S-CCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred C-CCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 2 5788999999999999999999999999999763
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=246.79 Aligned_cols=255 Identities=9% Similarity=0.061 Sum_probs=194.1
Q ss_pred eEEecCC---CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC---CCEEEEEEcCCcEEEEecCCcc-cc
Q 000085 1959 ASASPAS---GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD---KEIITGGHVDGSIKLLTSDGAK-TL 2031 (2342)
Q Consensus 1959 ~LaSsSs---D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD---GklLASGS~DGsIrVWDl~tgk-ll 2031 (2342)
.+++++. |+.+++|+..++.... .....| ...+.+++|+|+ +++|++|+.||.|++||+.+++ .+
T Consensus 33 l~~~~s~~~~d~~v~iw~~~~~~~~~-----~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 104 (357)
T 3i2n_A 33 FVTMGNFARGTGVIQLYEIQHGDLKL-----LREIEK---AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV 104 (357)
T ss_dssp EEEEEC--CCCEEEEEEEECSSSEEE-----EEEEEE---SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS
T ss_pred EEEecCccCCCcEEEEEeCCCCcccc-----eeeecc---cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE
Confidence 3445554 8999999976522110 001122 345677999999 6999999999999999999988 88
Q ss_pred eecccCCCCeEEE------EecCCCCEEEEEeCCCceEEEeccCCc-cccccc---cCCCCCCcccc----ccCCCCCce
Q 000085 2032 ETASGHCAPVTCL------ALSSDSNFLVTGSQDTTILLWRIHRAF-TSRTGT---IEPSSGMGTPG----NSIGSSTPA 2097 (2342)
Q Consensus 2032 ~tL~GHt~~VtcL------AfSPDG~~LaSGS~DGTVrVWDl~tg~-~i~t~~---~~~~~~V~svs----~SpDG~~La 2097 (2342)
..+.+|.+.|+++ +|+|++++|++|+.|++|++||+.++. ...... ......+.++. +++++..++
T Consensus 105 ~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 184 (357)
T 3i2n_A 105 YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVC 184 (357)
T ss_dssp EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEE
T ss_pred EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEE
Confidence 8999999999999 457899999999999999999999875 333331 11133566666 788999999
Q ss_pred eecCCCc-cccccCCc-eEEecCCCCCeEEEEEec---CCCEEEEEeCCCcEEEEECCCCeEEEEEe-----cCC--cEE
Q 000085 2098 NASADKS-RRRRIEGP-IHVLRGHHREILCCCVSS---DLGVVVSCSDSSDLLLHSIRRGRLIRRLV-----GVD--AHA 2165 (2342)
Q Consensus 2098 s~s~D~s-~~~~i~~~-l~~L~GHs~~Vt~VafSP---Dg~lLaSGS~DGtIrIWDLrTGklIrsL~-----gh~--vss 2165 (2342)
++..++. ..|+.... ......|...|++++|+| ++.++++|+.||.|++||+++++.+..+. +|. +..
T Consensus 185 ~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~ 264 (357)
T 3i2n_A 185 AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQ 264 (357)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEE
T ss_pred EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEE
Confidence 8888754 55666432 345577899999999999 99999999999999999998876544433 553 788
Q ss_pred EEEecCCc-EEEEEeCCCeEEEEEeCCc-------------------eeeeecCCCCCCeEEEEEccCCCEEE-EEe
Q 000085 2166 VSLSSEGV-IMTWNKLQHTLSSFTLNGV-------------------LVARAKLPLSGSIGCMEISLDGHSAL-IGV 2221 (2342)
Q Consensus 2166 LSfSpDG~-IlVwdssdGsI~I~dlnG~-------------------~L~s~~~~Hs~~ItsLafSPDGk~La-SGS 2221 (2342)
++|+|+|. +++.+..+|.+++|++... ........|...|++++|+|+|++++ +|+
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence 99999998 7888899999999998631 12222334899999999999999998 676
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=250.85 Aligned_cols=235 Identities=14% Similarity=0.210 Sum_probs=197.4
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
.+++|++ ..+++++.|+.|++||+.+++....+.. |...|++++|+|++++|++|+.||+|++||+.++.
T Consensus 97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~------- 167 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT------- 167 (401)
T ss_dssp BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------
T ss_pred EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------
Confidence 3466765 4466777899999999999998877765 89999999999999999999999999999998742
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR-RGRLIRR 2157 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr-TGklIrs 2157 (2342)
.+..+.+|...|.+++| ++.++++|+.||.|++||++ .+..+..
T Consensus 168 ---------------------------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 168 ---------------------------------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp ---------------------------------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred ---------------------------------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE
Confidence 34556789999999999 46799999999999999999 5677888
Q ss_pred EecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccc
Q 000085 2158 LVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235 (2342)
Q Consensus 2158 L~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw 2235 (2342)
+.+|. +..++|+++|.+++.+..++.|++|++...........|...|.+++|+|++..+++.+. +.
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs---------- 281 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GT---------- 281 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CT----------
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CC----------
Confidence 87764 788999999999999999999999999854444444569999999999998755544321 11
Q ss_pred ccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE--eCCCcEEEE
Q 000085 2236 GLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS--TADKQLIVF 2313 (2342)
Q Consensus 2236 ~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG--SsDGsIrVW 2313 (2342)
.|+.|++||+.+++++..+. |...|++++|+|++++|+++ +.||.|++|
T Consensus 282 ---------------------------~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 282 ---------------------------MDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp ---------------------------TTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred ---------------------------CCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence 27899999999999998887 66789999999999999995 489999999
Q ss_pred eCCCC
Q 000085 2314 TDPAL 2318 (2342)
Q Consensus 2314 Di~sL 2318 (2342)
+....
T Consensus 333 ~~~~~ 337 (401)
T 4aez_A 333 SYSSS 337 (401)
T ss_dssp EEETT
T ss_pred ecCCc
Confidence 97653
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=258.95 Aligned_cols=257 Identities=14% Similarity=0.087 Sum_probs=190.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
++..+++|+.|++|++|+..++...... ....| ...|++++|+| ++++|++|+.||+|+|||+.++......
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~----~~~gH---~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 203 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFI----KGIGA---GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA 203 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEE----CCCSS---SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEE----EccCC---CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence 3567889999999999987653221111 11223 34566799998 6889999999999999999876443333
Q ss_pred c--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC-ceeecCCCc-cccccC
Q 000085 2035 S--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST-PANASADKS-RRRRIE 2110 (2342)
Q Consensus 2035 ~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~-Las~s~D~s-~~~~i~ 2110 (2342)
. .+...|++++|+|++++|++|+.||+|++||+... .... ...|...|.+++|+|++.. +++++.|+. ..|++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence 3 34456899999999999999999999999999753 2222 3567788999999999875 567777764 456653
Q ss_pred C-----ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--------cEEEEEecCCcEEEE
Q 000085 2111 G-----PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--------AHAVSLSSEGVIMTW 2177 (2342)
Q Consensus 2111 ~-----~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--------vssLSfSpDG~IlVw 2177 (2342)
. ......+|...|++++|+|++.+|++|+.||+|++||++++.+...+..|. .....+++++.+++.
T Consensus 282 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred cccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence 2 233456899999999999999999999999999999999998887776542 122345555544443
Q ss_pred E-----------eC-CCeEEEEEeC-CceeeeecCCCCCCeEEE-EEccCCCEEEEEe
Q 000085 2178 N-----------KL-QHTLSSFTLN-GVLVARAKLPLSGSIGCM-EISLDGHSALIGV 2221 (2342)
Q Consensus 2178 d-----------ss-dGsI~I~dln-G~~L~s~~~~Hs~~ItsL-afSPDGk~LaSGS 2221 (2342)
+ .. ++.|++|+.. |..+.....+|...|.++ +|+|+|.+|++|+
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 3 22 3569999986 555555555688899988 6999999999874
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=258.06 Aligned_cols=251 Identities=10% Similarity=0.032 Sum_probs=172.8
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCccc-----ceecccCCCCeEEEEecC--------CCCEEEEEeCCCceEEEec
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKT-----LETASGHCAPVTCLALSS--------DSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkl-----l~tL~GHt~~VtcLAfSP--------DG~~LaSGS~DGTVrVWDl 2067 (2342)
...+++++.+|++|+.|++|+|||..++.. +..+.||.+.|++++|+| |+++|+|||.|++|+|||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 355677788999999999999999988754 356889999999999998 8899999999999999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLL 2146 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrI 2146 (2342)
.++. +...+.+|...|.+++|+|++. ++++|+.||+|++
T Consensus 174 ~~~~----------------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~ 213 (393)
T 4gq1_A 174 TDEG----------------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRI 213 (393)
T ss_dssp ETTE----------------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred CCCc----------------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEE
Confidence 7742 3345677889999999999874 7999999999999
Q ss_pred EECCCCeEEEEEec-------------------------C--CcEEEEEe-cCCcEEEEEeCCCeEEEEEeCCceeeeec
Q 000085 2147 HSIRRGRLIRRLVG-------------------------V--DAHAVSLS-SEGVIMTWNKLQHTLSSFTLNGVLVARAK 2198 (2342)
Q Consensus 2147 WDLrTGklIrsL~g-------------------------h--~vssLSfS-pDG~IlVwdssdGsI~I~dlnG~~L~s~~ 2198 (2342)
||+++++....... | .+..+.++ +||..++....++.+++|++.........
T Consensus 214 wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l 293 (393)
T 4gq1_A 214 FDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI 293 (393)
T ss_dssp EETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------
T ss_pred EECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE
Confidence 99998876544321 1 13456665 89999999999999999998754444434
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEE
Q 000085 2199 LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVF 2278 (2342)
Q Consensus 2199 ~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L 2278 (2342)
..|...+..+.+.++++.+..... . ....+.+.... .....+..||.|++||+.+++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~--~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 294 SDSTMKLGPKNLLPNVQGISLFPS--L-----------------LGACPHPRYMD--YFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp ----------CCSCSEEEECSSCC--S-----------------SCCEECSSCTT--EEEEEETTTTEEEEEETTCTTCC
T ss_pred eeecCccccEEEccccccccccCc--c-----------------eeEEEccCCCC--EEEEEECCCCEEEEEECCCCcEE
Confidence 447777888888777654431110 0 00011111000 00011235899999999999888
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2279 HVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2279 ~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
..+. +|..+|++++|+|||++|++++.|| +.+|.
T Consensus 353 ~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 353 SIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp EEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred EEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 7777 7889999999999999999998766 55555
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-23 Score=240.88 Aligned_cols=263 Identities=12% Similarity=0.058 Sum_probs=179.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCCc----
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDGA---- 2028 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~tg---- 2028 (2342)
+++..+++++.|+.+++|+..++.. .+.....+..|. ..+.+++|+| ++++|++|+.||.|++||+.++
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~---~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 21 FYGRHVATCSSDQHIKVFKLDKDTS--NWELSDSWRAHD---SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp SSSSEEEEEETTSEEEEEEECSSSC--CEEEEEEEECCS---SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred CCCCEEEEeeCCCeEEEEECCCCCC--cceecceeccCC---CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence 3567889999999999999765221 122222333343 4466799999 6999999999999999999887
Q ss_pred -----ccceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccc------------cCCCCCCccccc
Q 000085 2029 -----KTLETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGT------------IEPSSGMGTPGN 2089 (2342)
Q Consensus 2029 -----kll~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~------------~~~~~~V~svs~ 2089 (2342)
+.+..+.+|.+.|++++|+|+ +.+|++|+.|++|++||+.++....... ..+...+.++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 457788899999999999999 9999999999999999998876544321 245667888999
Q ss_pred cCC---CCCceeecCCCcccccc---CC--ceEEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2090 SIG---SSTPANASADKSRRRRI---EG--PIHVLRGHHREILCCCVSSDL----GVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2090 SpD---G~~Las~s~D~s~~~~i---~~--~l~~L~GHs~~Vt~VafSPDg----~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
+|+ +..++++..++...+.. .. .+..+.+|...|++++|+|++ .++++|+.||+|++||++++.....
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 255 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA 255 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence 997 88888888877655332 11 266788999999999999998 8999999999999999988755443
Q ss_pred EecCC--cEEEEEecCCcEEEEEeC----CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2158 LVGVD--AHAVSLSSEGVIMTWNKL----QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2158 L~gh~--vssLSfSpDG~IlVwdss----dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
..... ......+++......+.. ...+.+|+............|...|++++|+|+|++|++|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp -----------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET
T ss_pred cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC
Confidence 32221 112222222222221111 111222222111222233458999999999999999999973
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=258.92 Aligned_cols=266 Identities=14% Similarity=0.179 Sum_probs=213.2
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccC---Ccccc-ccc
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHR---AFTSR-TGT 2077 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~t---g~~i~-t~~ 2077 (2342)
|+|+++.+++++ .|+ .+++.+..+ .+|.+.|+|++|+| ++++|+||+.||+|+|||+.+ +.... ...
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 577777776654 377 456788888 89999999999999 999999999999999999987 43222 223
Q ss_pred cCCCCCCccccccCCCCCceeecCCCc-cccccC-----CceEEec----------C--CCCCeEEEE--EecCCCEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE-----GPIHVLR----------G--HHREILCCC--VSSDLGVVVS 2137 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~-----~~l~~L~----------G--Hs~~Vt~Va--fSPDg~lLaS 2137 (2342)
..+...+.++++++++..+++++.|+. ..|++. .....+. . +...+.++. +++++.++++
T Consensus 108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 357889999999999999999988875 446542 1122111 1 556777777 5578999999
Q ss_pred EeCCCcEEEEECCCCeEEEEEec--C--CcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEc-
Q 000085 2138 CSDSSDLLLHSIRRGRLIRRLVG--V--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEIS- 2211 (2342)
Q Consensus 2138 GS~DGtIrIWDLrTGklIrsL~g--h--~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafS- 2211 (2342)
|+.||+|++||+++++.+..+.. | .+..++|+|+|.+++.+..+|.|++|++.. ..+......|...|++++|+
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 99999999999999999999987 3 478999999999999999999999999974 44444444688899999665
Q ss_pred ---cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC----
Q 000085 2212 ---LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG---- 2284 (2342)
Q Consensus 2212 ---PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg---- 2284 (2342)
+++.++++|+. ||.|++||+.+++++..+...
T Consensus 268 ~~s~~~~~l~s~~~-----------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 268 FYGKNSVIVVGGSS-----------------------------------------KTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp TTCTTEEEEEEEST-----------------------------------------TEEEEEEETTTTEEEEEEESSSSCC
T ss_pred ccCCCccEEEEEcC-----------------------------------------CCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 46788998862 778999999999988887721
Q ss_pred ---------------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2285 ---------------------EGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2285 ---------------------Hs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|...|++++|+ ++.+|++|+.||.|++||+...
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred ccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence 55668999999 7899999999999999997654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-23 Score=265.40 Aligned_cols=254 Identities=13% Similarity=0.055 Sum_probs=207.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+.+++|+|||+++|+++.|++|+ |...+ +.+.+|...|.+++|+|+| .++++.+|+... ......
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~---~~~~~~ 82 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ---NGLLNS 82 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS---SCSSTT
T ss_pred EEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCC---ceEeec
Confidence 44599999999999999999999 64444 5558999999999999998 566666666443 222222
Q ss_pred CCCCCCccccccCCCCCceeecCCCc-cccccCCceEEecCCCC-----CeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKS-RRRRIEGPIHVLRGHHR-----EILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~~l~~L~GHs~-----~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.+...|.+++|+|+|..+++++.++. ..|+....+..+. |.. .|.+++|||||++|++|+.||+|++||+.++
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 44678999999999999999998876 5577666666667 765 4999999999999999999999999999988
Q ss_pred e-------EEEEEe----cC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee---eec-CCCCCCeEEEEEccCCC
Q 000085 2153 R-------LIRRLV----GV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA---RAK-LPLSGSIGCMEISLDGH 2215 (2342)
Q Consensus 2153 k-------lIrsL~----gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~---s~~-~~Hs~~ItsLafSPDGk 2215 (2342)
. .+.++. +| .+..++|+||| ++.+..++.+++|++.+.... ... ..|...|.+++|+ |+
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence 5 467774 33 37899999999 677788999999999875532 122 3588999999999 68
Q ss_pred EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE-
Q 000085 2216 SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL- 2294 (2342)
Q Consensus 2216 ~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf- 2294 (2342)
.+++++ +++|++||+.+++...... +|.+.|.+++|
T Consensus 238 ~LASa~------------------------------------------~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~ 274 (588)
T 2j04_A 238 KVVLTC------------------------------------------PGYVHKIDLKNYSISSLKT-GSLENFHIIPLN 274 (588)
T ss_dssp EEEEEC------------------------------------------SSEEEEEETTTTEEEEEEC-SCCSCCCEEEET
T ss_pred EEEEEe------------------------------------------CCeEEEEECCCCeEEEEEc-CCCceEEEEEee
Confidence 898875 5789999999888744444 79999999999
Q ss_pred -ecCCCEEEEEeCCCcEEEEeCC
Q 000085 2295 -NKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2295 -SPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+||+..|++++.||+ ++|..+
T Consensus 275 ~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 275 HEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TCSSCEEEEECSSCEE-EEEESS
T ss_pred eCCCCCEEEEEcCCCC-EEEeec
Confidence 999999999999999 999964
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-23 Score=248.40 Aligned_cols=254 Identities=11% Similarity=0.094 Sum_probs=192.1
Q ss_pred CC-CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1956 HG-KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1956 ~G-k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
++ ..+++++.|+.+++|+..++.... .+.. .++...+.+++|+| ++++|++|+.|+.|++||+.+ ..+..
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~ 155 (383)
T 3ei3_B 84 THPTTVAVGSKGGDIILWDYDVQNKTS------FIQG-MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQV 155 (383)
T ss_dssp SCTTEEEEEEBTSCEEEEETTSTTCEE------EECC-CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEE
T ss_pred CCCCEEEEEcCCCeEEEEeCCCcccce------eeec-CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEE
Confidence 44 688999999999999976532211 1111 12344567799999 778999999999999999986 45555
Q ss_pred ccc---CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC-CceeecCCCc-cccc
Q 000085 2034 ASG---HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS-TPANASADKS-RRRR 2108 (2342)
Q Consensus 2034 L~G---Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~-~Las~s~D~s-~~~~ 2108 (2342)
+.. |...|++++|+|++++|++|+.|++|++||+. +..... ...+...+.+++++|++. .+++++.|+. ..|+
T Consensus 156 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 233 (383)
T 3ei3_B 156 FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFK-EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233 (383)
T ss_dssp EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEE-EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEE-eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEe
Confidence 544 45889999999999999999999999999994 333332 345778899999999999 7788887764 5566
Q ss_pred cCC-----ceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-------------------c
Q 000085 2109 IEG-----PIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-------------------A 2163 (2342)
Q Consensus 2109 i~~-----~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-------------------v 2163 (2342)
... ......+|...|++++|+| ++.++++++.||.|++||+++++.+..+.+|. .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 313 (383)
T 3ei3_B 234 LRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDL 313 (383)
T ss_dssp GGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSE
T ss_pred CCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCc
Confidence 542 2333337999999999999 99999999999999999999988776665432 1
Q ss_pred EEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC-CCCCeEEEEEccCCCEEEEEe
Q 000085 2164 HAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP-LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
..+++++||.+ .+..++.|++|++. +..+...... |...+.+++|+|+|++|++|+
T Consensus 314 ~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 314 IVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp EEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred eEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 23455555555 44578999999986 4444443322 567888889999999999886
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=251.15 Aligned_cols=274 Identities=9% Similarity=0.070 Sum_probs=215.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---cceecc----------------------------------------
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAK---TLETAS---------------------------------------- 2035 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgk---ll~tL~---------------------------------------- 2035 (2342)
+.+++|++||++|+++ .++.|++||+.+|+ .+..+.
T Consensus 7 ~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 4568999999977766 58899999999988 555544
Q ss_pred --------------cCCCCeEEEEecCCCCEE-EEEeCCCceEEEecc--CCccccccc-cCCCCCCccccccCCCCCce
Q 000085 2036 --------------GHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIH--RAFTSRTGT-IEPSSGMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2036 --------------GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~--tg~~i~t~~-~~~~~~V~svs~SpDG~~La 2097 (2342)
+|.+.|++++|+|++++| ++|+.||+|+|||+. ++.....+. ..+...+.+++|+|++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 344479999999999996 899999999999999 665554442 25567889999999999998
Q ss_pred eecCCCc-cccccC--C----ceEEecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCeEEEEE-ecCC--cE
Q 000085 2098 NASADKS-RRRRIE--G----PIHVLRGHHREILCCCVSSD---LGVVVSCSDSSDLLLHSIRRGRLIRRL-VGVD--AH 2164 (2342)
Q Consensus 2098 s~s~D~s-~~~~i~--~----~l~~L~GHs~~Vt~VafSPD---g~lLaSGS~DGtIrIWDLrTGklIrsL-~gh~--vs 2164 (2342)
++..++. ..|++. . +...+.+|...|++++|+|+ +.+|++|+.|++|++||+++++.+..+ .+|. +.
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 8877654 334432 1 33477899999999999999 999999999999999999999988874 4554 78
Q ss_pred EEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecC------------------------CCCCCeEEEEEccCCCEEEE
Q 000085 2165 AVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKL------------------------PLSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~------------------------~Hs~~ItsLafSPDGk~LaS 2219 (2342)
.++|+ +|.+++.+..++.|++|++. +..+..... .+...|.+++|+|+++++++
T Consensus 246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 324 (450)
T 2vdu_B 246 SICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF 324 (450)
T ss_dssp EEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred EEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence 99999 99999999999999999986 443333221 13457999999999999998
Q ss_pred EeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC--CCC---eEEEEEecCCCCCeEEEEE
Q 000085 2220 GVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL--HTL---KVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2220 GS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL--~Tg---k~L~tL~lgHs~~ItsLaf 2294 (2342)
++. .|+.|+|||+ .++ +.+..+. .| ..|.+++|
T Consensus 325 ~~~----------------------------------------~d~~i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~ 362 (450)
T 2vdu_B 325 FVE----------------------------------------ATKCIIILEMSEKQKGDLALKQIIT-FP-YNVISLSA 362 (450)
T ss_dssp EET----------------------------------------TCSEEEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEE
T ss_pred EEC----------------------------------------CCCeEEEEEeccCCCCceeeccEec-cC-CceEEEEe
Confidence 861 1678999999 555 7777787 66 78999999
Q ss_pred ecCCCEEEEEeC------CCcEEEEeCC
Q 000085 2295 NKDNTNLLVSTA------DKQLIVFTDP 2316 (2342)
Q Consensus 2295 SPDG~~LaSGSs------DGsIrVWDi~ 2316 (2342)
+|++.++++++. +..|.+|...
T Consensus 363 ~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 363 HNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred cCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 996533333332 5568888743
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-21 Score=235.45 Aligned_cols=267 Identities=10% Similarity=0.112 Sum_probs=210.9
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceecccC
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASGH 2037 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~GH 2037 (2342)
.+++++.|+.|++|+..++.. ...+..+ ..+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~------~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~ 73 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKV------TATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG 73 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEE------EEEEECS----SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EEEEcCCCCEEEEEECCCCeE------EEEeecC----CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC
Confidence 467788899999999765311 1122222 235679999999966 67779999999999999998888766
Q ss_pred CCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2038 CAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2038 t~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
. .|.+++|+|++++|+ +++.|++|++||+.++.. +..+
T Consensus 74 ~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~----------------------------------------~~~~ 112 (391)
T 1l0q_A 74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV----------------------------------------AGTV 112 (391)
T ss_dssp S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----------------------------------------EEEE
T ss_pred C-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE----------------------------------------EEEE
Confidence 6 899999999999875 555779999999987532 1222
Q ss_pred cCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEE-EEEeCCCeEEEEEeCCce
Q 000085 2117 RGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIM-TWNKLQHTLSSFTLNGVL 2193 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~Il-VwdssdGsI~I~dlnG~~ 2193 (2342)
. +...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+..+ ....++++++|..+ +.+..++.+++|++....
T Consensus 113 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 113 K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 3 33468999999999977 78888999999999999999888764 47889999999876 566778999999997544
Q ss_pred eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2194 VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2194 L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
.... ..+...+.+++|+|+|+++++++.+.. ++.|++||+.
T Consensus 192 ~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~--------------------------------------~~~v~~~d~~ 232 (391)
T 1l0q_A 192 VIDT-VKVEAAPSGIAVNPEGTKAYVTNVDKY--------------------------------------FNTVSMIDTG 232 (391)
T ss_dssp EEEE-EECSSEEEEEEECTTSSEEEEEEECSS--------------------------------------CCEEEEEETT
T ss_pred EEEE-EecCCCccceEECCCCCEEEEEecCcC--------------------------------------CCcEEEEECC
Confidence 3322 236678999999999999998862111 6889999999
Q ss_pred CCeEEEEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCC
Q 000085 2274 TLKVFHVLKLGEGQDITALALNKDNTNL-LVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2274 Tgk~L~tL~lgHs~~ItsLafSPDG~~L-aSGSsDGsIrVWDi~sL 2318 (2342)
+++.+..+. .|. .+.+++|+|++++| ++++.|+.|++||....
T Consensus 233 ~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 233 TNKITARIP-VGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp TTEEEEEEE-CCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCeEEEEEe-cCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 999998888 443 58999999999988 56688999999997654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=247.10 Aligned_cols=263 Identities=11% Similarity=0.033 Sum_probs=191.9
Q ss_pred cCCCeEEecCCC-------ceEEEecCCCCCCCcccccc--cceeccccCcceeEEEEEcCCCCEEEEEE----------
Q 000085 1955 QHGKASASPASG-------TFLRMFKGPGGSGADEWHFP--RALAFASSGIRSSAVVSITHDKEIITGGH---------- 2015 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD-------~tIRVwdg~tgs~~~ew~~p--~sls~hs~gI~Svt~VafSpDGklLASGS---------- 2015 (2342)
++|+.+++|++| +.|++|+...........+. ..+.+ ..+-..+. +++++++.+++|.
T Consensus 24 ~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~--s~~~~~~~~~~g~~~~~~~l~s~ 100 (365)
T 4h5i_A 24 NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPT--AIDASKGIILVGCNENSTKITQG 100 (365)
T ss_dssp ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCC--EEEEETTEEEEECCCCHHHHHHT
T ss_pred CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceE--EEEeCCCEEEEEECCCccEEEEe
Confidence 567788887654 35999986542221111110 00111 11222333 3455667777664
Q ss_pred -cCCcEEEEecCCcccc----e-----ecccCCCCeEEEEecCCCCEEEEE--eCCCceEEEeccCCccccccccCCCCC
Q 000085 2016 -VDGSIKLLTSDGAKTL----E-----TASGHCAPVTCLALSSDSNFLVTG--SQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2016 -~DGsIrVWDl~tgkll----~-----tL~GHt~~VtcLAfSPDG~~LaSG--S~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
.|+.+|+|++.++... . ....+...|.+++|||||++++++ +.|++|+|||+.++...... .+...
T Consensus 101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~ 178 (365)
T 4h5i_A 101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGE 178 (365)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSC
T ss_pred cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCc
Confidence 5778999998764321 1 123455679999999999998754 47899999999998766554 35667
Q ss_pred CccccccCCCCCceeecCCCccccccC--Cc--eEEecCCCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCeE-
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIE--GP--IHVLRGHHREILCCCVSSDLGVVVSCSDSS----DLLLHSIRRGRL- 2154 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~--~~--l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG----tIrIWDLrTGkl- 2154 (2342)
+..++|+|||+.++++..+....|... .. .....+|...|.+++|+|++.++++++.|+ ++++||+..+..
T Consensus 179 V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~ 258 (365)
T 4h5i_A 179 VKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS 258 (365)
T ss_dssp CCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred eEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec
Confidence 999999999999999988877665542 22 234567899999999999999999999887 688899887654
Q ss_pred ---EEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2155 ---IRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2155 ---IrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
.+.+.+|. +.+++|+|||++++.+..++.|++|++. ++.+......|...|++|+|+|||++|++||.
T Consensus 259 ~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 259 VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence 34455553 7899999999999999999999999997 45555555679999999999999999999983
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=269.03 Aligned_cols=302 Identities=7% Similarity=-0.013 Sum_probs=224.2
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
..-++|+.+++++.|+++| ++.. +..+..| -..+.+++|+|+| .++.+.+|+. +..
T Consensus 22 ~~SpDG~~iASas~D~TV~--d~~~---------~~~l~gh---~~~v~~V~FsPdg-------~~~~~~~~~~---~~~ 77 (588)
T 2j04_A 22 TWARDGTLYLTTFPDISIG--QPKY---------AKDINCN---SKNLFHVKEFPLE-------FENKLDFELA---QQN 77 (588)
T ss_dssp EECTTSCEEEECSSSEEEE--EECC---------CSCCSSB---GGGTEEEEEECCC-------CCCTTTTSCC---CSS
T ss_pred EECCCCCEEEEEcCCceee--cccc---------cceecCC---CccEEEEEECCCC-------CcceEEEEeC---CCc
Confidence 3346899999999999999 5443 1223334 4455669999999 4666555554 333
Q ss_pred eecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCC----CCCCccccccCCCCCceeecCCCc-c
Q 000085 2032 ETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP----SSGMGTPGNSIGSSTPANASADKS-R 2105 (2342)
Q Consensus 2032 ~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~----~~~V~svs~SpDG~~Las~s~D~s-~ 2105 (2342)
..+. +|.+.|++++|||||++|++++.||+|+|||..+ ...... .+ ...+.+++|||||+.+++++.|+. .
T Consensus 78 ~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 78 GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 3333 5688999999999999999999999999999644 222222 11 225889999999999999998876 4
Q ss_pred ccccCCc---------eEEe----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---EEEEEe-cCC--cEEE
Q 000085 2106 RRRIEGP---------IHVL----RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR---LIRRLV-GVD--AHAV 2166 (2342)
Q Consensus 2106 ~~~i~~~---------l~~L----~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk---lIrsL~-gh~--vssL 2166 (2342)
.|+.... +..+ .+|.+.|.+++|+|+| +++++.|++|++||+.++. ..+++. +|. +..+
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv 232 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL 232 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence 5766432 4565 6788999999999999 8889999999999998877 345664 554 8889
Q ss_pred EEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEE--ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2167 SLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEI--SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2167 SfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLaf--SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
+|+ |..++.+. ++.|++|++.+..+.....+|...|+.++| +||+..+++++.+|. ++|.+. .
T Consensus 233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-------klw~~d-----~ 297 (588)
T 2j04_A 233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-------KVLLED-----E 297 (588)
T ss_dssp EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-------EEEESS-----S
T ss_pred EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-------EEEeec-----c
Confidence 999 57777665 699999999987775556579999999999 999999998876554 345444 2
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
+.+.++...... .|+++++|+..... +..+. +...|.+++|||||+.+|+++.
T Consensus 298 ~~~spd~~l~a~------~d~~v~lW~~~g~~-l~~~~--~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 298 LHVTADNIIAPY------LEKKFKKWSTIWNE-FNNYE--TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEECCCSSHHH------HHHHHHHTTTTTTS-SSSSC--CEEEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCceEEEE------cCCEEEEEECCCCc-eeeec--cceEEEEEEECCCCCEEEEEEe
Confidence 335555443332 28899999985544 33333 3567999999999999998863
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=229.77 Aligned_cols=256 Identities=12% Similarity=0.092 Sum_probs=203.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
+..|+++ .|++|++|+..++... ..+..+ .+...+.+++|+|++++|++|+.||+|++||+.+++.+..+.+
T Consensus 36 ~~~lAvg-~D~tV~iWd~~tg~~~------~~~~~~-~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~ 107 (318)
T 4ggc_A 36 GNVLAVA-LDNSVYLWSASSGDIL------QLLQME-QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 107 (318)
T ss_dssp TSEEEEE-ETTEEEEEETTTCCEE------EEEECC-STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEE-eCCEEEEEECCCCCEE------EEEEec-CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence 3445554 5889999997764221 112222 2344577899999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC-----
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE----- 2110 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~----- 2110 (2342)
|...+.++.+ ++..+++|+.++.+++|+.............+...+..+.+++++..++++..|+. ..|+..
T Consensus 108 h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 108 HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred ccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 9999887766 56899999999999999998865544445677788889999999999999988875 446553
Q ss_pred -CceEEecCCCCCeEEEEEecCCCE---EEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEe--CCCe
Q 000085 2111 -GPIHVLRGHHREILCCCVSSDLGV---VVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNK--LQHT 2183 (2342)
Q Consensus 2111 -~~l~~L~GHs~~Vt~VafSPDg~l---LaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwds--sdGs 2183 (2342)
........|.+.|.++++++++.. +++++.+++|++||.+++........+ .+..+++++++..++... .++.
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE
Confidence 234566778899999999987653 346788999999999998887776654 478889999998777654 6899
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|++|++..........+|.+.|++++|+|||++|++|+.
T Consensus 266 i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 266 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 999999754444455679999999999999999999973
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-23 Score=244.82 Aligned_cols=224 Identities=12% Similarity=0.069 Sum_probs=170.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCCcc--c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDGAK--T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~tgk--l 2030 (2342)
++|+.+++++.|+++++|+..++. ......+..|. ..+.+++|++ ++++|++|+.|++|+|||+.+++ .
T Consensus 23 ~~g~~lasgs~D~~v~lwd~~~~~----~~~~~~l~gH~---~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 23 YYGTRLATCSSDRSVKIFDVRNGG----QILIADLRGHE---GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95 (316)
T ss_dssp GGGCEEEEEETTTEEEEEEEETTE----EEEEEEEECCS---SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred CCCCEEEEEeCCCeEEEEEecCCC----cEEEEEEcCCC---ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence 467889999999999999865421 01112233444 4466799986 48999999999999999999874 5
Q ss_pred ceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2031 LETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
...+.+|...|++++|+|+ +.+|++|+.|++|++||+.......
T Consensus 96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~---------------------------------- 141 (316)
T 3bg1_A 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE---------------------------------- 141 (316)
T ss_dssp EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----------------------------------
T ss_pred EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----------------------------------
Confidence 5678899999999999998 8899999999999999998642110
Q ss_pred cCCceEEecCCCCCeEEEEEecC-----------------CCEEEEEeCCCcEEEEECCCC---eEEEEEecCC--cEEE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSD-----------------LGVVVSCSDSSDLLLHSIRRG---RLIRRLVGVD--AHAV 2166 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPD-----------------g~lLaSGS~DGtIrIWDLrTG---klIrsL~gh~--vssL 2166 (2342)
....+.+|...|.+++|+|+ +.++++|+.|++|++||++++ +.+..+.+|. +..+
T Consensus 142 ---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v 218 (316)
T 3bg1_A 142 ---VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV 218 (316)
T ss_dssp ---ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEE
T ss_pred ---eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEE
Confidence 01122345555555555554 578999999999999999765 4667777775 7899
Q ss_pred EEecCC----cEEEEEeCCCeEEEEEeCCc----eeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2167 SLSSEG----VIMTWNKLQHTLSSFTLNGV----LVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2167 SfSpDG----~IlVwdssdGsI~I~dlnG~----~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
+|+|++ .+++.+..++.|++|++... ........|...|++++|+|+|++|++|+.
T Consensus 219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 999987 78999999999999998641 111112238899999999999999999973
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-21 Score=237.35 Aligned_cols=289 Identities=11% Similarity=0.086 Sum_probs=220.5
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL 2034 (2342)
+++..+++++.++.+++|+..++....... .... ..+...+.+++|+++++++++++.|+.|++||+.+++.+..+
T Consensus 132 ~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~ 207 (433)
T 3bws_A 132 DNTRLAIPLLEDEGMDVLDINSGQTVRLSP-PEKY---KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV 207 (433)
T ss_dssp SSSEEEEEBTTSSSEEEEETTTCCEEEECC-CHHH---HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEECCCCeEeeecC-cccc---cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE
Confidence 356677788888899999976632211100 0011 223345677999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2035 SGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
..|...+.+++|+|++++++ +++.|++|++||+.++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~---------------------------------------- 247 (433)
T 3bws_A 208 DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI---------------------------------------- 247 (433)
T ss_dssp ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------------------------------------
T ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----------------------------------------
Confidence 99999999999999999885 5558999999999875321
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEe--------CCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcE-EEEEeCCCe
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCS--------DSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVI-MTWNKLQHT 2183 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS--------~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~I-lVwdssdGs 2183 (2342)
..+.. ...+.+++|+|+++.+++++ .||.|++||+++++.+..+.. .....++++|+|.. ++.+..++.
T Consensus 248 ~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 248 RKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp EECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred EEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE
Confidence 12222 24589999999999999888 589999999999988877643 24678999999974 455688899
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
+.+|++.+...... ..+...+.+++|+|+|+++++++.+.... .......+..
T Consensus 327 v~v~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~--------------------------~~~~~~~g~~ 379 (433)
T 3bws_A 327 IEVYDLKEKKVQKS-IPVFDKPNTIALSPDGKYLYVSCRGPNHP--------------------------TEGYLKKGLV 379 (433)
T ss_dssp EEEEETTTTEEEEE-EECSSSEEEEEECTTSSEEEEEECCCCCT--------------------------TTCTTSCCSS
T ss_pred EEEEECCCCcEEEE-ecCCCCCCeEEEcCCCCEEEEEecCCCcc--------------------------cccccccccc
Confidence 99999975443322 23778899999999999999886432200 0001111235
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA-DKQLIVFTDPA 2317 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs-DGsIrVWDi~s 2317 (2342)
||.|++||+.+++.+..+. . ...+.+++|+|+|++|++++. |+.|++|+..+
T Consensus 380 dg~v~~~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEFWE-A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEEEECCCCcEEEEec-C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8999999999999998887 3 557999999999999998875 99999999653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=245.53 Aligned_cols=236 Identities=10% Similarity=0.069 Sum_probs=185.9
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++|+.|++|++|+.........
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~-------- 110 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD-------- 110 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE--------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee--------
Confidence 45678899999999999999999999888776 567889999988 99999999999999875211000
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEE-ecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHV-LRGHHREILCCCVSS--DLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~-L~GHs~~Vt~VafSP--Dg~lLaSGS~DGtIrIWDLrTGklIrsL~g 2160 (2342)
......+.. ..+|.+.|.+++|+| ++.++++|+.||+|++||+++++.+.....
T Consensus 111 -----------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 111 -----------------------SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp -----------------------TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred -----------------------cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 001111222 236788999999999 999999999999999999999999777644
Q ss_pred C---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee-eecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccc
Q 000085 2161 V---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA-RAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235 (2342)
Q Consensus 2161 h---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~-s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw 2235 (2342)
+ .+..++|+|+|.+++.+..++.|++|++...... ..... |...|++++|+|+|.+|++|+
T Consensus 168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-------------- 233 (343)
T 3lrv_A 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-------------- 233 (343)
T ss_dssp CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--------------
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--------------
Confidence 3 3789999999999999999999999999744332 33344 999999999999999999997
Q ss_pred ccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec--CCCCCe--EEEEEecCCCEEEEEeC-CCcE
Q 000085 2236 GLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL--GEGQDI--TALALNKDNTNLLVSTA-DKQL 2310 (2342)
Q Consensus 2236 ~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l--gHs~~I--tsLafSPDG~~LaSGSs-DGsI 2310 (2342)
|+.|++||+++++.+..+.. .|...+ .+++|+|+|++|++++. |+.|
T Consensus 234 ----------------------------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 234 ----------------------------DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp ----------------------------SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEE
T ss_pred ----------------------------CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcE
Confidence 34799999998876544331 133334 36999999999999998 9999
Q ss_pred EEEeCCC
Q 000085 2311 IVFTDPA 2317 (2342)
Q Consensus 2311 rVWDi~s 2317 (2342)
+||+...
T Consensus 286 ~v~~~~~ 292 (343)
T 3lrv_A 286 TIYKFDK 292 (343)
T ss_dssp EEEEECT
T ss_pred EEEEEcc
Confidence 9999643
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=244.54 Aligned_cols=261 Identities=13% Similarity=0.058 Sum_probs=195.0
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecC-------
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSD------- 2026 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~------- 2026 (2342)
+.++..+++++.|++|++|+..++...... . . ..+.++.++|+ +++|+.|++|++|+..
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~------~--~---~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTI------T--T---PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEE------E--E---ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEE------e--c---CCceeeeeCCc---eEEecCCCeEEEEEccCceEEee
Confidence 456788999999999999997663222111 1 1 22334677887 8999999999999765
Q ss_pred --Ccccceecc-cCCCCeEEEEecC--CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2027 --GAKTLETAS-GHCAPVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2027 --tgkll~tL~-GHt~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
+++.+..+. +|.+.|.+++|+| ++++|++|+.||+|++||+.++..
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----------------------------- 161 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ----------------------------- 161 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----------------------------
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----------------------------
Confidence 444444443 6789999999999 999999999999999999987532
Q ss_pred CCccccccCCceEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-EEEec-CC--cEEEEEecCCcEEE
Q 000085 2102 DKSRRRRIEGPIHVL-RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI-RRLVG-VD--AHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2102 D~s~~~~i~~~l~~L-~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI-rsL~g-h~--vssLSfSpDG~IlV 2176 (2342)
.... ..|...|++++|+|++.++++|+.||+|++||+++++.+ ..+.. |. +..++|+|+|.+++
T Consensus 162 -----------~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 162 -----------YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp -----------EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred -----------EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence 1112 235567999999999999999999999999999999887 77776 54 78999999999999
Q ss_pred EEeCCCeEEEEEeCCceeeeecCC---CCCCe--EEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccc
Q 000085 2177 WNKLQHTLSSFTLNGVLVARAKLP---LSGSI--GCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLAS 2251 (2342)
Q Consensus 2177 wdssdGsI~I~dlnG~~L~s~~~~---Hs~~I--tsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~ 2251 (2342)
.+. ++.|++|++........... |...+ .+++|+|+|++|++|+.
T Consensus 231 s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~----------------------------- 280 (343)
T 3lrv_A 231 VEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN----------------------------- 280 (343)
T ss_dssp EEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET-----------------------------
T ss_pred EEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC-----------------------------
Confidence 888 45999999974322111111 22333 46999999999999862
Q ss_pred ccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec---CCCEEEEEeCCCcEEEEe
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK---DNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP---DG~~LaSGSsDGsIrVWD 2314 (2342)
.|+.|+||++.+....... .++..++|++ +.+.|++++.||.+.++-
T Consensus 281 -----------~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 281 -----------ESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp -----------TTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred -----------CCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 1567999998665432222 4677888998 889999999999999886
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=233.49 Aligned_cols=224 Identities=14% Similarity=0.131 Sum_probs=181.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcc--c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAK--T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgk--l 2030 (2342)
+++..+++++.|+.+++|+.... .......+..| ...+.+++|+++ +++|++|+.||.|++||+.+++ .
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 93 (379)
T 3jrp_A 21 YYGKRLATCSSDKTIKIFEVEGE----THKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 93 (379)
T ss_dssp SSSSEEEEEETTSCEEEEEEETT----EEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCCCEEEEEECCCcEEEEecCCC----cceeeeEecCC---CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeE
Confidence 45778899999999999986421 11222233333 345677999987 8999999999999999999987 7
Q ss_pred ceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2031 LETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+..+.+|...|++++|+|+ +.+|++|+.|++|++||+.....
T Consensus 94 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------------------------------------ 137 (379)
T 3jrp_A 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------------------------------ 137 (379)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC------------------------------------
T ss_pred eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc------------------------------------
Confidence 7788899999999999999 99999999999999999987421
Q ss_pred cCCceEEecCCCCCeEEEEEec-------------CCCEEEEEeCCCcEEEEECCCCe----EEEEEecCC--cEEEEEe
Q 000085 2109 IEGPIHVLRGHHREILCCCVSS-------------DLGVVVSCSDSSDLLLHSIRRGR----LIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSP-------------Dg~lLaSGS~DGtIrIWDLrTGk----lIrsL~gh~--vssLSfS 2169 (2342)
.....+.+|...|++++|+| ++.++++|+.||.|++||++++. .+..+.+|. +..++|+
T Consensus 138 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 138 --TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp --CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred --eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC
Confidence 12234678999999999999 69999999999999999998764 455666664 7899999
Q ss_pred cC---CcEEEEEeCCCeEEEEEeCCc-----eeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2170 SE---GVIMTWNKLQHTLSSFTLNGV-----LVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2170 pD---G~IlVwdssdGsI~I~dlnG~-----~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
|+ +.+++.+..++.+++|++... ........|...|++++|+|+|++|++++.+
T Consensus 216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence 99 899999999999999999753 1122222388999999999999999999743
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-21 Score=238.60 Aligned_cols=252 Identities=13% Similarity=0.208 Sum_probs=201.1
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec--ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA--SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL--~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
++|+||++ ++||+|. |++|+|||..+|++.+.+ .+|.+.|+||+|+|+|++|++|+.||+|+|||+.++.
T Consensus 109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~------ 180 (420)
T 4gga_A 109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------ 180 (420)
T ss_dssp BCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------
T ss_pred eeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc------
Confidence 45999975 5888876 999999999999987765 4678899999999999999999999999999998752
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RLIR 2156 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-klIr 2156 (2342)
.+..+.+|...|.++++ ++..+++|+.|+.+++||.+.. ..+.
T Consensus 181 ----------------------------------~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~ 224 (420)
T 4gga_A 181 ----------------------------------RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA 224 (420)
T ss_dssp ----------------------------------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ----------------------------------EEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeE
Confidence 34567889999998877 4689999999999999999864 5667
Q ss_pred EEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCce----eeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCC
Q 000085 2157 RLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL----VARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNG 2229 (2342)
Q Consensus 2157 sL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~----L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~ 2229 (2342)
.+.+|. +..+.++++|..++.+..++.+.+|+..... .......|...|.+++|+|++. .+++++ |+
T Consensus 225 ~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~--gs---- 298 (420)
T 4gga_A 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GT---- 298 (420)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE--CT----
T ss_pred EecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe--ec----
Confidence 777764 6788999999999999999999999985321 1122334889999999999765 445543 11
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe--CC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST--AD 2307 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS--sD 2307 (2342)
.|++|++||+.+++++..+. +...+.++.|++++..|++++ .|
T Consensus 299 ---------------------------------~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 299 ---------------------------------SDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQ 343 (420)
T ss_dssp ---------------------------------TTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTT
T ss_pred ---------------------------------CCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCC
Confidence 38999999999999998887 446799999999999998875 79
Q ss_pred CcEEEEeCCCCChh-h----hhhhhhccccCCCc
Q 000085 2308 KQLIVFTDPALSLK-V----VDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2308 GsIrVWDi~sLs~k-~----LdQLLk~GWegDGL 2336 (2342)
|.|+|||.++.... . ........|.+||-
T Consensus 344 ~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~ 377 (420)
T 4gga_A 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 377 (420)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 99999998765411 0 11233445777763
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-22 Score=243.83 Aligned_cols=265 Identities=11% Similarity=0.075 Sum_probs=201.5
Q ss_pred cCCCeEEecCCCceEEEecCCCCCC-----CcccccccceeccccC---------cceeEEEEEcCCC--CEEEEEEcCC
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSG-----ADEWHFPRALAFASSG---------IRSSAVVSITHDK--EIITGGHVDG 2018 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~-----~~ew~~p~sls~hs~g---------I~Svt~VafSpDG--klLASGS~DG 2018 (2342)
++|..+++++.|+.|++|+..++.. ...+.....+..|... ...+.+++|+|++ .+|++|+.|+
T Consensus 38 ~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~ 117 (447)
T 3dw8_B 38 HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 117 (447)
T ss_dssp SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS
T ss_pred CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCC
Confidence 3577889999999999999765321 1112222233333300 0346679999998 7999999999
Q ss_pred cEEEEecCCcccc---------------------------------------ee-cccCCCCeEEEEecCCCCEEEEEeC
Q 000085 2019 SIKLLTSDGAKTL---------------------------------------ET-ASGHCAPVTCLALSSDSNFLVTGSQ 2058 (2342)
Q Consensus 2019 sIrVWDl~tgkll---------------------------------------~t-L~GHt~~VtcLAfSPDG~~LaSGS~ 2058 (2342)
+|++||+.+++.. .. ..+|...|++++|+|++++|++| .
T Consensus 118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 196 (447)
T 3dw8_B 118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D 196 (447)
T ss_dssp CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C
T ss_pred eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C
Confidence 9999998764431 12 46899999999999999999999 7
Q ss_pred CCceEEEeccCCc-cccc------cccCCCCCCccccccCCC-CCceeecCCCc-cccccC--Cc----eEEecCCCC--
Q 000085 2059 DTTILLWRIHRAF-TSRT------GTIEPSSGMGTPGNSIGS-STPANASADKS-RRRRIE--GP----IHVLRGHHR-- 2121 (2342)
Q Consensus 2059 DGTVrVWDl~tg~-~i~t------~~~~~~~~V~svs~SpDG-~~Las~s~D~s-~~~~i~--~~----l~~L~GHs~-- 2121 (2342)
|++|++||+.+.. .... ....+...+.+++|+|++ ..+++++.++. ..|+.. .. ...+.+|..
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 276 (447)
T 3dw8_B 197 DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS 276 (447)
T ss_dssp SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC----
T ss_pred CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc
Confidence 9999999998432 2221 134677889999999998 88888888875 456653 22 578888876
Q ss_pred ----------CeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeEEEEEecCCc-----------------EEEEEecCCc
Q 000085 2122 ----------EILCCCVSSDLGVVVSCSDSSDLLLHSIRR-GRLIRRLVGVDA-----------------HAVSLSSEGV 2173 (2342)
Q Consensus 2122 ----------~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT-GklIrsL~gh~v-----------------ssLSfSpDG~ 2173 (2342)
.|++++|+|++.++++++. |+|++||+++ ++.+..+.+|.. ..++|+|+|.
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~ 355 (447)
T 3dw8_B 277 NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS 355 (447)
T ss_dssp -CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS
T ss_pred ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCC
Confidence 9999999999999999999 9999999997 888888887751 2389999999
Q ss_pred EEEEEeCCCeEEEEEeCCceeeee--------------------------------cCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2174 IMTWNKLQHTLSSFTLNGVLVARA--------------------------------KLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dlnG~~L~s~--------------------------------~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+++.+..++.|++|++........ ...+...|.+++|+|+|.+|++|+
T Consensus 356 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 356 VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC
T ss_pred EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe
Confidence 999999999999999874433211 112456789999999999999886
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-22 Score=245.59 Aligned_cols=278 Identities=17% Similarity=0.221 Sum_probs=207.1
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..+++++.|+.|++|+..++. ....+..|.. .+.+++| ++++|++|+.||+|++||+.+++.+..+.
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~------~~~~~~~h~~---~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLE------CKRILTGHTG---SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCC------EEEEECCCSS---CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCe------EEEEEcCCCC---cEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 67788999999999999976532 1222333443 3455666 88999999999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc--ccccCCCCCCccccccCCCCCceeecCCCc-ccccc--C
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR--TGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--E 2110 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~--t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~ 2110 (2342)
+|.+.|++++|+ +.++++|+.||+|++||+.++.... .....+...+.++.+ ++..+++++.++. ..|+. .
T Consensus 211 ~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 211 HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence 999999999997 4699999999999999999875543 224566677777777 7888888888765 45665 4
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
..+..+.+|...|.+++| ++.++++|+.||+|++||+++++++..+.+|.....++..+|..++.+..+|.|++|++.
T Consensus 287 ~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 287 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp CEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred cEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECC
Confidence 567889999999999999 478999999999999999999999999998875555555589999999999999999985
Q ss_pred Cce---------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2191 GVL---------VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2191 G~~---------L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
... .......|.+.|++++| ++.++++|+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~--------------------------------------- 403 (435)
T 1p22_A 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH--------------------------------------- 403 (435)
T ss_dssp HHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS---------------------------------------
T ss_pred CCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC---------------------------------------
Confidence 322 33334569999999999 7888887752
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
||.|++||+.+........ ...+..++.|.
T Consensus 404 --Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~ 433 (435)
T 1p22_A 404 --DDTILIWDFLNDPAAQAEP--PRSPSRTYTYI 433 (435)
T ss_dssp --SSEEEEEC------------------------
T ss_pred --CCEEEEEECCCCCCcccCC--CCCCccceeee
Confidence 7889999998876544433 23344555443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-22 Score=233.99 Aligned_cols=257 Identities=8% Similarity=-0.038 Sum_probs=207.1
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEec-CCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTS-DGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl-~tgkll~ 2032 (2342)
+++..+++++.|+.+++|+..++.... ....... +...+.+++|+|+++ +|++|+.||.|++||+ .+++. .
T Consensus 21 ~~~~~l~~~~~d~~v~iw~~~~~~~~~---~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~ 93 (342)
T 1yfq_A 21 PSKSLLLITSWDGSLTVYKFDIQAKNV---DLLQSLR---YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-Q 93 (342)
T ss_dssp GGGTEEEEEETTSEEEEEEEETTTTEE---EEEEEEE---CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-E
T ss_pred CCCCEEEEEcCCCeEEEEEeCCCCccc---cceeeee---cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-E
Confidence 456778899999999999866522100 0112222 334567799999999 9999999999999999 77654 7
Q ss_pred eccc--CCCCeEEEEecCCCCEEEEEeCCCceEEEeccC---------CccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2033 TASG--HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR---------AFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2033 tL~G--Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t---------g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
.+.+ |...|++++|+| +++|++|+.|++|++||+.+ +....... +...+.++.+++++ ++++..
T Consensus 94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--l~~~~~ 168 (342)
T 1yfq_A 94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR--LIVGMN 168 (342)
T ss_dssp ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE--EEEEES
T ss_pred eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc--EEEEeC
Confidence 7788 999999999999 99999999999999999987 55444432 67788899999888 666666
Q ss_pred CC-ccccccCC-----ceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC------eEEEEEecC-------
Q 000085 2102 DK-SRRRRIEG-----PIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIRRG------RLIRRLVGV------- 2161 (2342)
Q Consensus 2102 D~-s~~~~i~~-----~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTG------klIrsL~gh------- 2161 (2342)
++ +..|+... .......|...|++++|+| ++.++++|+.||.|++||+..+ +.+..+..|
T Consensus 169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
T 1yfq_A 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248 (342)
T ss_dssp TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence 54 45576654 3345567889999999999 9999999999999999999887 777788776
Q ss_pred ----CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCC-CCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2162 ----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPL-SGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2162 ----~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~H-s~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
.+..++|+|+|.+++.+..+|.|++|++...........| ...|++++ |+|++|++|+.|+.
T Consensus 249 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 6789999999999999999999999999854444444556 99999999 99999999987665
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-21 Score=232.81 Aligned_cols=242 Identities=13% Similarity=0.082 Sum_probs=179.7
Q ss_pred EEEEEEcCCcEEEEecCCc---ccceecccCCCC-------------------------eEEEEecCC----CCEEEEEe
Q 000085 2010 IITGGHVDGSIKLLTSDGA---KTLETASGHCAP-------------------------VTCLALSSD----SNFLVTGS 2057 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tg---kll~tL~GHt~~-------------------------VtcLAfSPD----G~~LaSGS 2057 (2342)
.|++++ ..+|++|+..++ +.+.++.+|..+ |..++++|| ++++++++
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 345554 678999999988 677788777754 555666677 78888877
Q ss_pred CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec---CCCE
Q 000085 2058 QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS---DLGV 2134 (2342)
Q Consensus 2058 ~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP---Dg~l 2134 (2342)
.+ +++|++.+++.+.+...++...+..+.++++|+. +..+.+|...++.++|++ ++.+
T Consensus 135 ~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~-----------------~~s~~~~~~~v~~l~fs~~~g~~~~ 195 (356)
T 2w18_A 135 NI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG-----------------KENQFLMPPEETILTFAEVQGMQEA 195 (356)
T ss_dssp EE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE-----------------EEEEEECCCSSCEEEEEEEETSTTE
T ss_pred Ce--EEEEecCCCcEEEecccCCCCcEEEEEECCCCce-----------------eeeeccCCCceeeEEeeccCCCCce
Confidence 44 7889987765554434456666666777666644 345678999999999999 7899
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCC-----cEEEEEecCCcEEEE------------EeCCCeEEEEEeCCceeeee
Q 000085 2135 VVSCSDSSDLLLHSIRRGRLIRRLVGVD-----AHAVSLSSEGVIMTW------------NKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGklIrsL~gh~-----vssLSfSpDG~IlVw------------dssdGsI~I~dlnG~~L~s~ 2197 (2342)
++||+.|++|+|||+.+|++++++.+|. +..++|+|||.+++. +..++++++|+.........
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV 275 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence 9999999999999999999999998643 457789999988743 45667899999874433221
Q ss_pred c-----CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2198 K-----LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2198 ~-----~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
. .+|...+.+..++ +.++++|+. |++|+|||+
T Consensus 276 ~~~~~p~Gh~~~~lsg~~s--g~~lASgS~-----------------------------------------DgTIkIWDl 312 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDVK--DHCAAAILT-----------------------------------------SGTIAIWDL 312 (356)
T ss_dssp EEECCCTTCCCCEEEEEEE--TTEEEEEET-----------------------------------------TSCEEEEET
T ss_pred EEeeccCCCcceeEccccC--CCEEEEEcC-----------------------------------------CCcEEEEEC
Confidence 1 2355554444333 677777762 778999999
Q ss_pred CCCeEEEEEecCCCCCeE-EEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2273 HTLKVFHVLKLGEGQDIT-ALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~It-sLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
.++++++++. +|...+. +++|||||++|++|+.|++|+|||.
T Consensus 313 ~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999998 7776554 6899999999999999999999984
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=235.59 Aligned_cols=231 Identities=8% Similarity=0.094 Sum_probs=179.7
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
..+.+++|+|||++|++|+.|+ ++||++.+++...... ...+..+++.++++.+ ++|+.|++|++||+.++..
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~--- 93 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD--- 93 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE---
T ss_pred CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE---
Confidence 3456699999999999998665 7899998876655433 2358888999888877 5688899999999987532
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eE
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG-RL 2154 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG-kl 2154 (2342)
+..+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.
T Consensus 94 -------------------------------------~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~ 132 (355)
T 3vu4_A 94 -------------------------------------VSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR 132 (355)
T ss_dssp -------------------------------------EEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB
T ss_pred -------------------------------------EEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee
Confidence 22233 56689999998764 3333 4789999999988 66
Q ss_pred EEEEecCCcEEEEEecCCcEEEE--EeCCCeEEEEEeCCce----------------eeeecCCCCCCeEEEEEccCCCE
Q 000085 2155 IRRLVGVDAHAVSLSSEGVIMTW--NKLQHTLSSFTLNGVL----------------VARAKLPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2155 IrsL~gh~vssLSfSpDG~IlVw--dssdGsI~I~dlnG~~----------------L~s~~~~Hs~~ItsLafSPDGk~ 2216 (2342)
+..+.. ....+++++ ..+++ +..+|.|++|++.... .......|...|++++|+|+|++
T Consensus 133 ~~~~~~-~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~ 209 (355)
T 3vu4_A 133 ITDDIR-FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM 209 (355)
T ss_dssp SSCCEE-EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred eEEecc-CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence 555544 445566777 44444 4678889999987432 02334459999999999999999
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe-EEEEECCCCeEEEEEecC-CCCCeEEEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS-ICFLDLHTLKVFHVLKLG-EGQDITALAL 2294 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs-IrIWDL~Tgk~L~tL~lg-Hs~~ItsLaf 2294 (2342)
|++|+. |++ |++||+.+++++..+..+ |...|++++|
T Consensus 210 l~s~s~-----------------------------------------d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~ 248 (355)
T 3vu4_A 210 VATCSQ-----------------------------------------DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW 248 (355)
T ss_dssp EEEEET-----------------------------------------TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred EEEEeC-----------------------------------------CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence 999972 787 999999999999999844 9999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2295 NKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2295 SPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+|++++|++|+.||+|++|+....
T Consensus 249 s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 249 STDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp CTTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCCCEEEEEECCCEEEEEEccCC
Confidence 999999999999999999997543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-21 Score=226.20 Aligned_cols=257 Identities=12% Similarity=0.093 Sum_probs=192.2
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG 2036 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G 2036 (2342)
|..+++++.|+.+++|+..+... .....+..|. ..+.+++|+|++++|++|+.||.|++||+.+++.+. +.+
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~ 125 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQ----TIPKAQQMHT---GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQ 125 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSC----EEEEEEEECS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEE
T ss_pred ceEEEEECCCCcEEEEEcCCCCc----eeEEEecccc---CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-ecc
Confidence 57889999999999999764111 1112233344 446679999999999999999999999999987666 567
Q ss_pred CCCCeEEEEe--cCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC-CccccccCCce
Q 000085 2037 HCAPVTCLAL--SSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPI 2113 (2342)
Q Consensus 2037 Ht~~VtcLAf--SPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l 2113 (2342)
|...|++++| ++++.+|++|+.|++|++||+.++........ ...+.++.+. +..++++..+ ....|+.....
T Consensus 126 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 126 HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL--PERCYCADVI--YPMAVVATAERGLIVYQLENQP 201 (368)
T ss_dssp CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC--SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSC
T ss_pred ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec--CCCceEEEec--CCeeEEEeCCCcEEEEEecccc
Confidence 9999999999 99999999999999999999998765554421 1223333333 3344444333 33445543321
Q ss_pred ----EEecCCCCCeEEEEEecCCCE----EEEEeCCCcEEEEECCCC---eEEEEEecC--------------CcEEEEE
Q 000085 2114 ----HVLRGHHREILCCCVSSDLGV----VVSCSDSSDLLLHSIRRG---RLIRRLVGV--------------DAHAVSL 2168 (2342)
Q Consensus 2114 ----~~L~GHs~~Vt~VafSPDg~l----LaSGS~DGtIrIWDLrTG---klIrsL~gh--------------~vssLSf 2168 (2342)
.....+...+.++++.++... +++|+.||.|++||++.. ..+..+..| .+..++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (368)
T 3mmy_A 202 SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF 281 (368)
T ss_dssp EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence 112234556777777766554 999999999999999987 556666665 3788999
Q ss_pred ecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2169 SSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2169 SpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
+|+|.+++.+..+|.|++|++...........|...|++++|+|+|++|++|+.++.
T Consensus 282 sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 282 HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred ecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence 999999999999999999999865555555569999999999999999999986654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=240.53 Aligned_cols=249 Identities=9% Similarity=-0.015 Sum_probs=164.5
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--------CCCEEEEEEcCCcEEEEecC
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--------DKEIITGGHVDGSIKLLTSD 2026 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--------DGklLASGS~DGsIrVWDl~ 2026 (2342)
+++..+++++.|+++|+|+..++... .......+..| ...|.+++|+| |+++||+|+.|++|+|||+.
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~-~~~~~~~~~gH---~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETII-TQHVLGGKSGH---HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEE-EEEEECTTTSC---SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccc-eeeeecccCCC---CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 45667899999999999986552111 11111123334 44566699987 89999999999999999999
Q ss_pred CcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc
Q 000085 2027 GAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR 2105 (2342)
Q Consensus 2027 tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~ 2105 (2342)
++..+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.++........ .........++.+.
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~-~~~~~~~~~~s~~~------------ 241 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ-TELVKNPWLLTLNT------------ 241 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCSEEEES------------
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc-cCCcccceEEeccc------------
Confidence 888888888999999999999987 4899999999999999998654333211 11111111111000
Q ss_pred ccccCCceEEecCCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--c------------------E
Q 000085 2106 RRRIEGPIHVLRGHHREILCCCVS-SDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--A------------------H 2164 (2342)
Q Consensus 2106 ~~~i~~~l~~L~GHs~~Vt~VafS-PDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--v------------------s 2164 (2342)
..........+|...|.++.|+ +++..+++++.|+++++||+.++.....+..+. + .
T Consensus 242 --~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 242 --LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp --GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred --ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence 0011223346899999999997 799999999999999999999887766654432 1 1
Q ss_pred EEEEec--CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2165 AVSLSS--EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2165 sLSfSp--DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
...+++ ++.+++.+..++.|++|++...........|..+|++++|+|||++|++++.
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 122322 4456677788999999998743333334458899999999999999999984
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-20 Score=225.28 Aligned_cols=236 Identities=13% Similarity=0.081 Sum_probs=196.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-----ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-----TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~-----tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.+++|+|++.++++++.|+.|++||+.+++... .+.+|.+.|++++|++++.++++++.|++|++||+.++.
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--- 202 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--- 202 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce---
Confidence 358999988889999899999999999998776 566899999999999999999999999999999997742
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCe
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLrTGk 2153 (2342)
.+..+..|...+.+++|+|+++.++ +++.|+.|++||+++++
T Consensus 203 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 203 -------------------------------------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp -------------------------------------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred -------------------------------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 2344567888999999999999885 55589999999999999
Q ss_pred EEEEEecCC-cEEEEEecCCcEEEEEe--------CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2154 LIRRLVGVD-AHAVSLSSEGVIMTWNK--------LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2154 lIrsL~gh~-vssLSfSpDG~IlVwds--------sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
.+..+..+. +..++++|+|..++... .++.|++|++....+... ..|...+.+++|+|+|+++++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~-- 322 (433)
T 3bws_A 246 EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGPPGNKRHIVSGNTENKIYVSDM-- 322 (433)
T ss_dssp EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEEEECEEEEEECSSTTEEEEEET--
T ss_pred EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccCCCCcceEEECCCCCEEEEEec--
Confidence 988887654 68899999998877765 477999999875433322 235678999999999987765531
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
.|+.|++||+.+++.+..+. +...+.+++|+|+|++|+++
T Consensus 323 --------------------------------------~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~ 362 (433)
T 3bws_A 323 --------------------------------------CCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVS 362 (433)
T ss_dssp --------------------------------------TTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEE
T ss_pred --------------------------------------CCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEE
Confidence 26889999999999888876 67789999999999999988
Q ss_pred eC---------------CCcEEEEeCCCC
Q 000085 2305 TA---------------DKQLIVFTDPAL 2318 (2342)
Q Consensus 2305 Ss---------------DGsIrVWDi~sL 2318 (2342)
+. ||.|++||....
T Consensus 363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp ECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred ecCCCccccccccccccceEEEEEECCCC
Confidence 76 579999997654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=251.75 Aligned_cols=226 Identities=14% Similarity=0.130 Sum_probs=183.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcc--c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAK--T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgk--l 2030 (2342)
++|+.+++++.|++|++|+..++ .+.....+..| ...+.+++|+++ +++|++|+.||+|++||+.+++ .
T Consensus 19 ~dg~~latg~~dg~I~vwd~~~~----~~~~~~~l~~h---~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 19 YYGKRLATCSSDKTIKIFEVEGE----THKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91 (753)
T ss_dssp SSSCCEEEEETTTEEEEEEEETT----EEEEEEEECCC---SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCCCeEEEEECCCcEEEEecCCC----CCccceeccCC---cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence 35677889999999999985431 12222233334 345677999988 9999999999999999999886 6
Q ss_pred ceecccCCCCeEEEEecCC--CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2031 LETASGHCAPVTCLALSSD--SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPD--G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+..+.+|.+.|++++|+|+ ++++++|+.||+|++||+.++..
T Consensus 92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~------------------------------------ 135 (753)
T 3jro_A 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------------------------------ 135 (753)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC------------------------------------
T ss_pred cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC------------------------------------
Confidence 7788899999999999999 99999999999999999987421
Q ss_pred cCCceEEecCCCCCeEEEEEec-------------CCCEEEEEeCCCcEEEEECCCC----eEEEEEecCC--cEEEEEe
Q 000085 2109 IEGPIHVLRGHHREILCCCVSS-------------DLGVVVSCSDSSDLLLHSIRRG----RLIRRLVGVD--AHAVSLS 2169 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSP-------------Dg~lLaSGS~DGtIrIWDLrTG----klIrsL~gh~--vssLSfS 2169 (2342)
.....+.+|...|++++|+| ++.++++|+.||+|++||++++ ..+..+.+|. +..++|+
T Consensus 136 --~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 136 --TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp --CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred --cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 12234578999999999999 5899999999999999999887 5667777764 7899999
Q ss_pred cC---CcEEEEEeCCCeEEEEEeCCce-----eeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2170 SE---GVIMTWNKLQHTLSSFTLNGVL-----VARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2170 pD---G~IlVwdssdGsI~I~dlnG~~-----L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
|+ |.+++.+..+|.|++|++.... .......|...|++++|+|+|.++++|+.|+.
T Consensus 214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 99 8999999999999999997531 11112238899999999999999999975444
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=224.77 Aligned_cols=225 Identities=13% Similarity=0.118 Sum_probs=176.8
Q ss_pred CCeEEecCCCceEEEecCCCCCCCc----ccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCccc-
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGAD----EWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKT- 2030 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~----ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkl- 2030 (2342)
+..+++++.++.|++|+........ .......+..|.. .+.+++|+|++. +|++|+.||.|++|++.++..
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 217 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK---EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 217 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS---CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC---CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence 5688899999999999865411100 0122223344444 455699999999 999999999999999987432
Q ss_pred ------ceecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC
Q 000085 2031 ------LETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK 2103 (2342)
Q Consensus 2031 ------l~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~ 2103 (2342)
...+.+|...|.+++|+| ++.+|++|+.|++|++||+++...
T Consensus 218 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------------------------------- 266 (430)
T 2xyi_A 218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------------------------------- 266 (430)
T ss_dssp GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-------------------------------
T ss_pred CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-------------------------------
Confidence 456778999999999999 678999999999999999987421
Q ss_pred ccccccCCceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCC-CeEEEEEecCC--cEEEEEecCCc-EEEEE
Q 000085 2104 SRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRR-GRLIRRLVGVD--AHAVSLSSEGV-IMTWN 2178 (2342)
Q Consensus 2104 s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrT-GklIrsL~gh~--vssLSfSpDG~-IlVwd 2178 (2342)
..++..+..|...|++++|+|++. ++++|+.||+|++||+++ +..+..+..|. +..++|+|+|. +++.+
T Consensus 267 ------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 267 ------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp ------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred ------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence 123445678999999999999987 789999999999999998 56777887664 78999999995 68888
Q ss_pred eCCCeEEEEEeCC--------------ceeeeecCCCCCCeEEEEEccCCC-EEEEEe
Q 000085 2179 KLQHTLSSFTLNG--------------VLVARAKLPLSGSIGCMEISLDGH-SALIGV 2221 (2342)
Q Consensus 2179 ssdGsI~I~dlnG--------------~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS 2221 (2342)
..++.|++|++.. ..+......|...|++++|+|++. ++++++
T Consensus 341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 8999999999864 123333345889999999999999 788776
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=226.60 Aligned_cols=220 Identities=9% Similarity=0.052 Sum_probs=180.7
Q ss_pred eeEEEEEcCCCCEE-EEEEcCCcEEEEecC--Ccccceecc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcc
Q 000085 1998 SSAVVSITHDKEII-TGGHVDGSIKLLTSD--GAKTLETAS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1998 Svt~VafSpDGklL-ASGS~DGsIrVWDl~--tgkll~tL~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
.+.+++|+|++++| ++|+.||+|+|||+. +++.+..+. .|...|++++|+|++++|++|+.|+.|++|++.++..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE 183 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence 57889999999985 899999999999999 888888876 5778999999999999999999999999999988664
Q ss_pred cc-c--cccCCCCCCccccccCC---CCCceeecCCCc-cccccC--CceEE-ecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2073 SR-T--GTIEPSSGMGTPGNSIG---SSTPANASADKS-RRRRIE--GPIHV-LRGHHREILCCCVSSDLGVVVSCSDSS 2142 (2342)
Q Consensus 2073 i~-t--~~~~~~~~V~svs~SpD---G~~Las~s~D~s-~~~~i~--~~l~~-L~GHs~~Vt~VafSPDg~lLaSGS~DG 2142 (2342)
.. . ....+...+.++.|+|+ +..+++++.|+. ..|+.. ..+.. +.+|...|++++|+ ++.++++|+.||
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~ 262 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD 262 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS
T ss_pred ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC
Confidence 43 1 23457788999999999 888988888764 457653 44555 56899999999999 999999999999
Q ss_pred cEEEEECCCCeEEEEEecC---------------------------CcEEEEEecCCcEEEEEe-CCCeEEEEEe--CCc
Q 000085 2143 DLLLHSIRRGRLIRRLVGV---------------------------DAHAVSLSSEGVIMTWNK-LQHTLSSFTL--NGV 2192 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~gh---------------------------~vssLSfSpDG~IlVwds-sdGsI~I~dl--nG~ 2192 (2342)
+|++||+++++++..+..+ .+..++++++|.+++... .++.|++|++ ...
T Consensus 263 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 263 KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence 9999999999999888632 256889999999998887 7899999999 322
Q ss_pred ---eeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2193 ---LVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2193 ---~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
........| ..|.+++|+|++ ++++.
T Consensus 343 ~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 343 GDLALKQIITFP-YNVISLSAHNDE-FQVTL 371 (450)
T ss_dssp TCEEEEEEEECS-SCEEEEEEETTE-EEEEE
T ss_pred CceeeccEeccC-CceEEEEecCCc-EEEEE
Confidence 222222235 899999999964 44433
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-19 Score=214.64 Aligned_cols=282 Identities=12% Similarity=0.060 Sum_probs=187.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCccccee
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~t 2033 (2342)
++|+.+++++.+ .+++|+..++.. ....+.. .+.++++.++++.+ ++|+.|++|+|||..+++.+..
T Consensus 29 ~dg~~la~g~~~-~~~iw~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 29 QDQSCLILSTLK-SFEIYNVHPVAH--------IMSQEMR---HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp TTSSEEEEECSS-EEEEEEETTEEE--------EEEEECS---CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEcCC-EEEEEecCCcce--------eeeeecC---CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 567778877766 578998554110 1111111 24568889988866 5678889999999999999888
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC-ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCc
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA-FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP 2112 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg-~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~ 2112 (2342)
+. |...|.+++|+++. ++.+ .|++|++||+.++ .....
T Consensus 97 ~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~------------------------------------- 135 (355)
T 3vu4_A 97 IK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD------------------------------------- 135 (355)
T ss_dssp EE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC-------------------------------------
T ss_pred EE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE-------------------------------------
Confidence 87 67799999998764 4433 4889999999874 22111
Q ss_pred eEEecCCCCCeEEEEEecCCCEEEE--EeCCCcEEEEECCCCe----------------EEEEEecCC--cEEEEEecCC
Q 000085 2113 IHVLRGHHREILCCCVSSDLGVVVS--CSDSSDLLLHSIRRGR----------------LIRRLVGVD--AHAVSLSSEG 2172 (2342)
Q Consensus 2113 l~~L~GHs~~Vt~VafSPDg~lLaS--GS~DGtIrIWDLrTGk----------------lIrsL~gh~--vssLSfSpDG 2172 (2342)
+.. ....+++++ .+++. |+.||.|++||++++. ++..+.+|. +..++|+|+|
T Consensus 136 ---~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g 207 (355)
T 3vu4_A 136 ---DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207 (355)
T ss_dssp ---CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred ---ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence 111 334455666 55555 6899999999999876 267777775 7899999999
Q ss_pred cEEEEEeCCCe-EEEEEeC-CceeeeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc-cc
Q 000085 2173 VIMTWNKLQHT-LSSFTLN-GVLVARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED-FD 2248 (2342)
Q Consensus 2173 ~IlVwdssdGs-I~I~dln-G~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia-Fs 2248 (2342)
.+++.+..++. +++|++. +..+.....+ |...|++++|+|+|++|++|+.|+. .++|++......... +.
T Consensus 208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~------v~iw~~~~~~~~~~~~~~ 281 (355)
T 3vu4_A 208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT------LHVFEIFNDQDNKRHALK 281 (355)
T ss_dssp SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE------EEEEESSCCSCCCSEETT
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE------EEEEEccCCCCccccccc
Confidence 99999999998 9999997 5555554435 9999999999999999999986544 334444332111000 00
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.. ..... .+. .|.+ ....+...+......++|++|+++|++++.||.+++|++..
T Consensus 282 ~~--~~~~~-----~~~---~~~~----~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 282 GW--INMKY-----FQS---EWSL----CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp TT--EECCC-----CCC---SSCS----EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred ce--eeccc-----ccc---ccce----eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 00 00000 000 0000 01111212233457799999999999999999999999543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-18 Score=210.41 Aligned_cols=225 Identities=16% Similarity=0.102 Sum_probs=183.5
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCCCCCCccc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
.++++++.|+.|++||+.+++.+..+.+|.. +.+++|+|++++| ++++.|++|++||+.++..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--------------- 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--------------- 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------
Confidence 4688899999999999999999998887765 8999999999977 6788999999999987532
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEEecC-CcEE
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIRRGRLIRRLVGV-DAHA 2165 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLrTGklIrsL~gh-~vss 2165 (2342)
+..+..|. .+.+++|+|++++++ +++.|+.|++||+.+++.+..+..+ .+..
T Consensus 67 -------------------------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 120 (391)
T 1l0q_A 67 -------------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG 120 (391)
T ss_dssp -------------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred -------------------------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcce
Confidence 22333343 899999999999775 5557799999999999999888765 4788
Q ss_pred EEEecCCcEE-EEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2166 VSLSSEGVIM-TWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2166 LSfSpDG~Il-VwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
++++++|+.+ +.+..++.+++|++.......... +...+.+++|+|+|+++++++.
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~---------------------- 177 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANF---------------------- 177 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEET----------------------
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cCCCcceEEECCCCCEEEEEeC----------------------
Confidence 9999999866 666778999999987544333222 3467799999999998854431
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEeCCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST---ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS---sDGsIrVWDi~sL 2318 (2342)
.++.|++||+.+++.+..+. +...+.+++|+|++++|++++ .|+.|++||....
T Consensus 178 ------------------~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 178 ------------------DSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp ------------------TTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ------------------CCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 26789999999999888876 566899999999999999888 7999999997654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=219.24 Aligned_cols=186 Identities=12% Similarity=0.055 Sum_probs=135.7
Q ss_pred cceeEEEEEcCC----CCEEEEEEc--------------------CCcEEEEec-CCcccceecccCCCCeEEEEecC--
Q 000085 1996 IRSSAVVSITHD----KEIITGGHV--------------------DGSIKLLTS-DGAKTLETASGHCAPVTCLALSS-- 2048 (2342)
Q Consensus 1996 I~Svt~VafSpD----GklLASGS~--------------------DGsIrVWDl-~tgkll~tL~GHt~~VtcLAfSP-- 2048 (2342)
+..+..++++|| ++++++++. |+.|++|++ .+|+.+..+.+|...|+.++|++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 346778999999 888887663 888888888 45777788888888888888888
Q ss_pred -CCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC---CCCeE
Q 000085 2049 -DSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH---HREIL 2124 (2342)
Q Consensus 2049 -DG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH---s~~Vt 2124 (2342)
++.+|+|||.|++|+|||+.+++++++ +.+| ...+.
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~t----------------------------------------L~g~~~~v~~v~ 230 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKK----------------------------------------MHIDDSYQASVC 230 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEE----------------------------------------EECCC---CCCE
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEE----------------------------------------EcCCCcceeeeE
Confidence 678999999999999999998754433 3332 23566
Q ss_pred EEEEecCCCEE------------EEEeCCCcEEEEECCCCeEEEEEe-----cCCcEEEEEecCCcEEEEEeCCCeEEEE
Q 000085 2125 CCCVSSDLGVV------------VSCSDSSDLLLHSIRRGRLIRRLV-----GVDAHAVSLSSEGVIMTWNKLQHTLSSF 2187 (2342)
Q Consensus 2125 ~VafSPDg~lL------------aSGS~DGtIrIWDLrTGklIrsL~-----gh~vssLSfSpDG~IlVwdssdGsI~I~ 2187 (2342)
+++|+|+|.++ ++|+.|++|++||..+++.+..+. +|....++.+.+|.+++.+..+++|++|
T Consensus 231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIW 310 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW 310 (356)
T ss_dssp EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEE
T ss_pred EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEE
Confidence 67777777665 678899999999999999887762 4544455666667788888888899999
Q ss_pred EeCCceeeeecCCCCCCeE-EEEEccCCCEEEEEe
Q 000085 2188 TLNGVLVARAKLPLSGSIG-CMEISLDGHSALIGV 2221 (2342)
Q Consensus 2188 dlnG~~L~s~~~~Hs~~It-sLafSPDGk~LaSGS 2221 (2342)
++..........+|...+. +++|+|||++|++|+
T Consensus 311 Dl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 311 DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp ETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred ECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 9875444444445766554 689999999999997
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-18 Score=223.86 Aligned_cols=320 Identities=9% Similarity=0.049 Sum_probs=228.6
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEec--CCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTS--DGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl--~tgkll~ 2032 (2342)
+++..+++.+.|+++++|+..++... ..+.. +.. +.+++|+|||++|++++.|++|++||+ .+++.+.
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~------~~i~~---g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIV------KVIDT---GYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEE------EEEEC---STT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEE------EEEec---Ccc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE
Confidence 35567788888999999997763221 12221 111 456999999999999999999999999 8888888
Q ss_pred ecccCCCCeEEEEecC----CCCEEEEEe-CCCceEEEeccCCccccccccC---------C-CCCCccccccCCCCCce
Q 000085 2033 TASGHCAPVTCLALSS----DSNFLVTGS-QDTTILLWRIHRAFTSRTGTIE---------P-SSGMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSP----DG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~---------~-~~~V~svs~SpDG~~La 2097 (2342)
++.. ...+..++|+| ||++|++++ .+++|.|||..+++.+...... + ...+..+.+++++..++
T Consensus 217 ~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 217 EIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 8874 45679999999 999999988 4899999999887765554211 1 22566788899877664
Q ss_pred eec-CCC-ccccccCC--ceE-EecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeEEEEEec----CCcEEEE
Q 000085 2098 NAS-ADK-SRRRRIEG--PIH-VLRGHHREILCCCVSSDLGVVVSC-SDSSDLLLHSIRRGRLIRRLVG----VDAHAVS 2167 (2342)
Q Consensus 2098 s~s-~D~-s~~~~i~~--~l~-~L~GHs~~Vt~VafSPDg~lLaSG-S~DGtIrIWDLrTGklIrsL~g----h~vssLS 2167 (2342)
+.. .++ +..++... .+. ....+...+.+++|+|++++++++ ..+++|.+||+.+++++..+.. |....+.
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred EEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence 443 332 33344322 111 122456678899999999977655 5689999999999999998874 4322222
Q ss_pred -EecC-CcEEEEEe-CCCeEEEEEeCC-------ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2168 -LSSE-GVIMTWNK-LQHTLSSFTLNG-------VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2168 -fSpD-G~IlVwds-sdGsI~I~dlnG-------~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
++|+ |.+++.+. .+++|.+|+... ..+......|...+..++++|||++|++++.-+.
T Consensus 376 ~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~------------ 443 (543)
T 1nir_A 376 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP------------ 443 (543)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCS------------
T ss_pred cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCC------------
Confidence 4677 66555553 568999999864 3333333447778899999999999997641000
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEE-EEEec-------CCCCCeEEEEEecCCCEEEEEe----
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVF-HVLKL-------GEGQDITALALNKDNTNLLVST---- 2305 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L-~tL~l-------gHs~~ItsLafSPDG~~LaSGS---- 2305 (2342)
+. -.+++|.|||+.+++.. ..+.. .+...+..+.|+|||+.|+++.
T Consensus 444 ------------~~----------~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~ 501 (543)
T 1nir_A 444 ------------DA----------RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 501 (543)
T ss_dssp ------------SH----------HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT
T ss_pred ------------Cc----------ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC
Confidence 00 01568999999999877 44421 4577899999999999998763
Q ss_pred -CCCcEEEEeCCCCC
Q 000085 2306 -ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2306 -sDGsIrVWDi~sLs 2319 (2342)
.|+.|.|||..++.
T Consensus 502 ~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 502 NDSSALVVVDDKTLK 516 (543)
T ss_dssp TSCCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCce
Confidence 47999999987764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-18 Score=215.12 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=176.3
Q ss_pred CCEEEEEEcC------CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCC---ceEEEeccCCcccccccc
Q 000085 2008 KEIITGGHVD------GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT---TILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2008 GklLASGS~D------GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DG---TVrVWDl~tg~~i~t~~~ 2078 (2342)
+..++.++.+ +.|++||+++ .....+.+|.+.|.+++|+|||++|++++.|+ +|++||+.++..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~------ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------ 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE------
Confidence 5555555544 7999999974 56778889999999999999999999999885 999999987521
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCeEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD--LLLHSIRRGRLI 2155 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt--IrIWDLrTGklI 2155 (2342)
..+..|...+.+++|+|||+.|+ +++.||. |++||+.+++.
T Consensus 216 -----------------------------------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~- 259 (415)
T 2hqs_A 216 -----------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI- 259 (415)
T ss_dssp -----------------------------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-
T ss_pred -----------------------------------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-
Confidence 23456778899999999999877 7777665 99999999876
Q ss_pred EEEecCC--cEEEEEecCCcEEEEEeC-CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2156 RRLVGVD--AHAVSLSSEGVIMTWNKL-QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2156 rsL~gh~--vssLSfSpDG~IlVwdss-dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
..+..+. +..++|+|||+.+++... ++ .+.+|++.+..... ...+...+.+++|+|||++|++++.+..
T Consensus 260 ~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~g----- 333 (415)
T 2hqs_A 260 RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGG----- 333 (415)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSS-----
T ss_pred EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-EecCCCcccCeEECCCCCEEEEEECcCC-----
Confidence 4454443 678999999998887765 44 67777877544332 2236678999999999999998863211
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC--
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK-- 2308 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG-- 2308 (2342)
+..|++||+.+++.. .+. .|. .+.+++|+|||++|++++.|+
T Consensus 334 ---------------------------------~~~i~~~d~~~~~~~-~l~-~~~-~~~~~~~spdg~~l~~~s~~~~~ 377 (415)
T 2hqs_A 334 ---------------------------------QQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNGTMVIYSSSQGMG 377 (415)
T ss_dssp ---------------------------------CEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTSSEEEEEEEETTE
T ss_pred ---------------------------------ceEEEEEECCCCCEE-Eec-CCC-CcCCeEEcCCCCEEEEEEcCCCc
Confidence 457999999998864 444 444 899999999999999998877
Q ss_pred -cEEEEeCCCC
Q 000085 2309 -QLIVFTDPAL 2318 (2342)
Q Consensus 2309 -sIrVWDi~sL 2318 (2342)
.|++|+..+.
T Consensus 378 ~~l~~~d~~g~ 388 (415)
T 2hqs_A 378 SVLNLVSTDGR 388 (415)
T ss_dssp EEEEEEETTSC
T ss_pred cEEEEEECCCC
Confidence 7999997644
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=220.56 Aligned_cols=312 Identities=9% Similarity=-0.023 Sum_probs=216.8
Q ss_pred ecCCCeEEecCC-Cc-----eEEEecCCCCCCCcccccccceeccccC---------------------cceeEEEEEcC
Q 000085 1954 FQHGKASASPAS-GT-----FLRMFKGPGGSGADEWHFPRALAFASSG---------------------IRSSAVVSITH 2006 (2342)
Q Consensus 1954 f~~Gk~LaSsSs-D~-----tIRVwdg~tgs~~~ew~~p~sls~hs~g---------------------I~Svt~VafSp 2006 (2342)
.++|+.+++++. |+ .+++|+..++.... ....+... ...+..++|||
T Consensus 45 SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 45 APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL------LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE------EECGGGTC--------------------CCEESCCCEECT
T ss_pred ecCCCEEEEEeccCCCCcccEEEEEECCCCceeE------ccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 456777877776 66 89999876632111 11111100 02245689999
Q ss_pred CCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC---
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS--- 2081 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~--- 2081 (2342)
||++|++++. +.|++||+.++. ....+..|...+.+++|||||++|++++ +++|.+||+.++...........
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~ 196 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIG 196 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEE
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcccee
Confidence 9999999885 999999999883 4556778889999999999999999988 56999999988654332211111
Q ss_pred ------------CCCccccccCCCCCceeecCCC----------------------------------ccccccCC--ce
Q 000085 2082 ------------SGMGTPGNSIGSSTPANASADK----------------------------------SRRRRIEG--PI 2113 (2342)
Q Consensus 2082 ------------~~V~svs~SpDG~~Las~s~D~----------------------------------s~~~~i~~--~l 2113 (2342)
..+..+.|+|||+.++....+. +..|+... ..
T Consensus 197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 276 (741)
T 2ecf_A 197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT 276 (741)
T ss_dssp ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence 1147789999999998775442 12233322 22
Q ss_pred EEec---CCCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCeEEEEEecCC------cEEEEEecCCcEEEEEe
Q 000085 2114 HVLR---GHHREILCCCVSSDLGVVVSCSD-----SSDLLLHSIRRGRLIRRLVGVD------AHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2114 ~~L~---GHs~~Vt~VafSPDg~lLaSGS~-----DGtIrIWDLrTGklIrsL~gh~------vssLSfSpDG~IlVwds 2179 (2342)
..+. .|...+.+++| |||+.|++++. ++.|++||+.+++....+..+. +..++|+|||++++...
T Consensus 277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 355 (741)
T 2ecf_A 277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE 355 (741)
T ss_dssp EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC
T ss_pred EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec
Confidence 2222 47788999999 99999987654 5789999999999877766543 35789999999777777
Q ss_pred CCCeEEEEEeC--CceeeeecCCCCCCeEEE-EEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2180 LQHTLSSFTLN--GVLVARAKLPLSGSIGCM-EISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2180 sdGsI~I~dln--G~~L~s~~~~Hs~~ItsL-afSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
.++..++|.++ +. ......|...|.++ .|+|||+.++..+.+..
T Consensus 356 ~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~------------------------------- 402 (741)
T 2ecf_A 356 RTGFQHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIES------------------------------- 402 (741)
T ss_dssp TTSSCEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSC-------------------------------
T ss_pred CCCccEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC-------------------------------
Confidence 77876777654 55 33334477788887 59999998876542111
Q ss_pred CCCccCCCCeEEEEECCC-CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCC
Q 000085 2257 NNRFDFPSPSICFLDLHT-LKVFHVLKLGEGQDITALALNKDNTNLLVSTAD----KQLIVFTDP 2316 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~T-gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD----GsIrVWDi~ 2316 (2342)
...++||++.. +.....+. +...+.+++|+|||++|+....+ +.+.+|+..
T Consensus 403 -------~~~~~l~~~~~~g~~~~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 403 -------ARESQIYAVPLQGGQPQRLS--KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp -------TTCBEEEEEETTCCCCEECC--CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred -------CceEEEEEEEcCCCCeeecc--cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 12577887753 44445555 35678999999999998876443 468888854
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-18 Score=192.86 Aligned_cols=260 Identities=13% Similarity=0.041 Sum_probs=188.0
Q ss_pred EEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC-CccccccccCCCCCCccccccC
Q 000085 2013 GGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR-AFTSRTGTIEPSSGMGTPGNSI 2091 (2342)
Q Consensus 2013 SGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t-g~~i~t~~~~~~~~V~svs~Sp 2091 (2342)
.++.|++|++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ +.............+..+.|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3457899999999988765 4566899999999999999999987 88999999988 6544333233346678899999
Q ss_pred CCCCceeecCC---Ccccc--cc-CCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECC--CCeEEEEEecC-
Q 000085 2092 GSSTPANASAD---KSRRR--RI-EGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIR--RGRLIRRLVGV- 2161 (2342)
Q Consensus 2092 DG~~Las~s~D---~s~~~--~i-~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLr--TGklIrsL~gh- 2161 (2342)
+++.++....+ ....| +. ......+..+. .+.+++|+|+++.++ +++.|+.+.+|++. ++.. ..+..+
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcccCC
Confidence 99999887733 22233 22 23344444443 489999999999877 78899999999863 4443 344333
Q ss_pred -CcEEEEEecCCcEEEEEe-CCCeEEEEEeC--CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2162 -DAHAVSLSSEGVIMTWNK-LQHTLSSFTLN--GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2162 -~vssLSfSpDG~IlVwds-sdGsI~I~dln--G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
.+..++|+|+|..+++.. .++.+.+|.++ +..+. ....|...+.+++|+|+|++|++++.++....
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~--------- 242 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE-RITDSAYGDWFPHPSPSGDKVVFVSYDADVFD--------- 242 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE-ECCCCSEEEEEEEECTTSSEEEEEEEETTCCS---------
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE-EEecCCcccCCeEECCCCCEEEEEEcCCCCCc---------
Confidence 368899999999877765 47778888774 43333 23347788999999999999998874433100
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE--EEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV--FHVLKLGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~--L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
.....++.|++||+.+++. +..+. +|...+.+++|+|++++|++++.|.
T Consensus 243 ---------------------~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 ---------------------HPRDLDVRVQLMDMDGGNVETLFDLF-GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ---------------------CCSSEEEEEEEEETTSCSCEEEEEEE-ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ---------------------ccccCceEEEEEecCCCCceeeeccC-CCCcccccceECCCCCEEEEEEecc
Confidence 0000146799999988765 44444 6788899999999999999887654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-17 Score=203.60 Aligned_cols=238 Identities=11% Similarity=0.004 Sum_probs=180.4
Q ss_pred ceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCC---cEEEEecCCcccceecccCCCCeEE
Q 000085 1967 TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDG---SIKLLTSDGAKTLETASGHCAPVTC 2043 (2342)
Q Consensus 1967 ~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DG---sIrVWDl~tgkll~tL~GHt~~Vtc 2043 (2342)
+.|++|+..+. ....+..|.. .+.+++|+|||+.|++++.|+ .|++||+.+++.. .+..|.+.+.+
T Consensus 159 ~~i~i~d~~g~-------~~~~l~~~~~---~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~ 227 (415)
T 2hqs_A 159 YELRVSDYDGY-------NQFVVHRSPQ---PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGA 227 (415)
T ss_dssp EEEEEEETTSC-------SCEEEEEESS---CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEE
T ss_pred ceEEEEcCCCC-------CCEEEeCCCC---cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccC
Confidence 79999986531 1233334443 356699999999999999885 9999999998765 56778899999
Q ss_pred EEecCCCCEEE-EEeCCCc--eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCC
Q 000085 2044 LALSSDSNFLV-TGSQDTT--ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHH 2120 (2342)
Q Consensus 2044 LAfSPDG~~La-SGS~DGT--VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs 2120 (2342)
++|+|||++|+ +++.|+. |.+||+.++. ...+..|.
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----------------------------------------~~~l~~~~ 266 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----------------------------------------IRQVTDGR 266 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCC-----------------------------------------EEECCCCS
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCC-----------------------------------------EEeCcCCC
Confidence 99999999887 7777765 8888887642 23456677
Q ss_pred CCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCeEEEEEec--CCcEEEEEecCCcEEEEEeCC---CeEEEEEeCCc
Q 000085 2121 REILCCCVSSDLGVVVSCSD-SS--DLLLHSIRRGRLIRRLVG--VDAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGV 2192 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~-DG--tIrIWDLrTGklIrsL~g--h~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~ 2192 (2342)
..+.+++|+|||+.|++++. +| .|++||+.+++.. .+.. ..+..++|+|||+.+++...+ ..|.+|++.+.
T Consensus 267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 88999999999999988876 45 6888899888743 3333 346778999999988887653 57999998765
Q ss_pred eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2193 LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2193 ~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
..... ..+ ..+.+++|+|||++|++++.++. ...|++||+
T Consensus 346 ~~~~l-~~~-~~~~~~~~spdg~~l~~~s~~~~--------------------------------------~~~l~~~d~ 385 (415)
T 2hqs_A 346 GVQVL-SST-FLDETPSLAPNGTMVIYSSSQGM--------------------------------------GSVLNLVST 385 (415)
T ss_dssp CEEEC-CCS-SSCEEEEECTTSSEEEEEEEETT--------------------------------------EEEEEEEET
T ss_pred CEEEe-cCC-CCcCCeEEcCCCCEEEEEEcCCC--------------------------------------ccEEEEEEC
Confidence 54332 224 38999999999999998863221 236999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEecCCC
Q 000085 2273 HTLKVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
..+ ....+. +|.+.|.+++|+|.-.
T Consensus 386 ~g~-~~~~l~-~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 386 DGR-FKARLP-ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSC-CEEECC-CSSSEEEEEEECCCCC
T ss_pred CCC-cEEEee-CCCCCCcCCccccccc
Confidence 744 456676 7889999999999653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-16 Score=186.60 Aligned_cols=268 Identities=11% Similarity=0.144 Sum_probs=183.8
Q ss_pred EecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcC-CcEEEEecC--Ccc--cceecc
Q 000085 1961 ASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVD-GSIKLLTSD--GAK--TLETAS 2035 (2342)
Q Consensus 1961 aSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~D-GsIrVWDl~--tgk--ll~tL~ 2035 (2342)
++++.++.+++|+... .. ....... ..+ ...+.+++|+|+|++|++++.+ +.|++|+++ +++ .+..+.
T Consensus 9 ~~~~~~~~v~~~~~~~-~~--~~~~~~~-~~~---~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 9 IASPESQQIHVWNLNH-EG--ALTLTQV-VDV---PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEGGGTEEEEEEECT-TS--CEEEEEE-EEC---SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EeCCCCCeEEEEEECC-CC--cEEEeee-Eec---CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 4446688999998642 11 1111111 111 2234569999999988888876 999999997 554 334455
Q ss_pred cCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceE
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIH 2114 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~ 2114 (2342)
.+. .+.+++|+|+|++|++++. +++|.+||+..+... ....
T Consensus 82 ~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-------------------------------------~~~~ 123 (343)
T 1ri6_A 82 LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-------------------------------------GVVD 123 (343)
T ss_dssp CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-------------------------------------EEEE
T ss_pred cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc-------------------------------------cccc
Confidence 444 7899999999998877665 889999999532100 1112
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeEEE----EEec---CCcEEEEEecCCcEEEE-EeCCCeE
Q 000085 2115 VLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRR-GRLIR----RLVG---VDAHAVSLSSEGVIMTW-NKLQHTL 2184 (2342)
Q Consensus 2115 ~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrT-GklIr----sL~g---h~vssLSfSpDG~IlVw-dssdGsI 2184 (2342)
.+..+ ..+.+++|+|+++++++++ .|+.|.+||+.+ ++... .+.. .....++++|+|..++. +..++.+
T Consensus 124 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i 202 (343)
T 1ri6_A 124 VVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV 202 (343)
T ss_dssp EECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred cccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 22333 3588899999999888777 899999999987 65533 2222 24678999999996554 4578899
Q ss_pred EEEEeCC--ce---eeeec-CC----CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccc
Q 000085 2185 SSFTLNG--VL---VARAK-LP----LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQS 2254 (2342)
Q Consensus 2185 ~I~dlnG--~~---L~s~~-~~----Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s 2254 (2342)
.+|+++. .. ..... .+ ....+.+++|+|+|++++++..
T Consensus 203 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~-------------------------------- 250 (343)
T 1ri6_A 203 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-------------------------------- 250 (343)
T ss_dssp EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--------------------------------
T ss_pred EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--------------------------------
Confidence 9999853 11 11111 11 1346778999999998886531
Q ss_pred cCCCCccCCCCeEEEEECC----CCeEEEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2255 VDNNRFDFPSPSICFLDLH----TLKVFHVLKLGEGQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2255 ~ss~~ias~DGsIrIWDL~----Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
.++.|.+||+. +.+.+..+. .+. .+.+++|+|+|++|++++ .|+.|.+|+++
T Consensus 251 --------~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 251 --------TASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp --------TTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred --------CCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 16789999998 345555565 333 389999999999999887 68999999643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-17 Score=225.50 Aligned_cols=329 Identities=10% Similarity=0.068 Sum_probs=232.2
Q ss_pred eeecCCCeEEecCC------CceEEEecCCCCCCCcccccccceeccccCc----ceeEEEEEcCCCCEEEEEEcC----
Q 000085 1952 FLFQHGKASASPAS------GTFLRMFKGPGGSGADEWHFPRALAFASSGI----RSSAVVSITHDKEIITGGHVD---- 2017 (2342)
Q Consensus 1952 flf~~Gk~LaSsSs------D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI----~Svt~VafSpDGklLASGS~D---- 2017 (2342)
..-++|+.|+.++. +..|.+|+..++. ...+..|...+ ..+..++|+|||+++++++.+
T Consensus 59 ~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-------~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~ 131 (1045)
T 1k32_A 59 RFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-------IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 131 (1045)
T ss_dssp EECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-------EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred EECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-------eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCc
Confidence 33467888887643 3478888865521 22333333222 123679999999977877754
Q ss_pred --CcEEEEecCCcccc-------------------------------------------------eecccCCCCeEEEEe
Q 000085 2018 --GSIKLLTSDGAKTL-------------------------------------------------ETASGHCAPVTCLAL 2046 (2342)
Q Consensus 2018 --GsIrVWDl~tgkll-------------------------------------------------~tL~GHt~~VtcLAf 2046 (2342)
..|++|++.+++.. ..+.+|...|.++.|
T Consensus 132 ~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~ 211 (1045)
T 1k32_A 132 SMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVI 211 (1045)
T ss_dssp TCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEE
T ss_pred ccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEE
Confidence 35777887655422 123467888999999
Q ss_pred cCCCCEEEEEeCCCceEEEeccCC-ccccccccCCCCCCccccccCCCCCceeecCCCccccccC-CceEEecC------
Q 000085 2047 SSDSNFLVTGSQDTTILLWRIHRA-FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPIHVLRG------ 2118 (2342)
Q Consensus 2047 SPDG~~LaSGS~DGTVrVWDl~tg-~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l~~L~G------ 2118 (2342)
+++ .++++++.|+++.||.+... ...... ..+ ..+....++|||+.++......+..|+.. ..+..+.+
T Consensus 212 s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~-~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~ 288 (1045)
T 1k32_A 212 VGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSF-TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESP 288 (1045)
T ss_dssp ETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCC-CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBC
T ss_pred eCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCC-CCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccc
Confidence 988 67778889999999988642 222222 122 23556789999999888765555555542 22333443
Q ss_pred -----CCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEE-EEE
Q 000085 2119 -----HHREILCCCVS-SDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLS-SFT 2188 (2342)
Q Consensus 2119 -----Hs~~Vt~VafS-PDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~-I~d 2188 (2342)
|...+.+++|+ |||+.+++++ ++.|.+|++.++.... +..+ .+..++|+ ||..+++...++.+. +|+
T Consensus 289 ~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d 365 (1045)
T 1k32_A 289 EDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD 365 (1045)
T ss_dssp CSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE
T ss_pred ccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEE
Confidence 34579999999 9999998888 7899999998887554 4333 35678899 999888887777787 888
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
+.+....... .|...+.+++|+|||++|++++. ++.|+
T Consensus 366 ~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~-----------------------------------------~~~v~ 403 (1045)
T 1k32_A 366 YRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVAND-----------------------------------------RFEIM 403 (1045)
T ss_dssp TTTCCEEECC-CCCCSEEEEEECTTSSEEEEEET-----------------------------------------TSEEE
T ss_pred CCCCCceEec-CCccceeeeEECCCCCEEEEECC-----------------------------------------CCeEE
Confidence 8765554444 67889999999999999998752 56799
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCC----------cEEEEeCCCCChhhhh----hhhhccccCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK----------QLIVFTDPALSLKVVD----QMLKLGWEGD 2334 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDG----------sIrVWDi~sLs~k~Ld----QLLk~GWegD 2334 (2342)
+||+.+++....+. +|...+.+++|||||++|++++.++ .|++||..+.....+. ......|.+|
T Consensus 404 ~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 404 TVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp EEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred EEECCCCceEEecc-CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCC
Confidence 99999999887776 7888999999999999999887654 8999997654321111 1123457777
Q ss_pred Cc
Q 000085 2335 GL 2336 (2342)
Q Consensus 2335 GL 2336 (2342)
|-
T Consensus 483 G~ 484 (1045)
T 1k32_A 483 SK 484 (1045)
T ss_dssp SC
T ss_pred CC
Confidence 73
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=220.41 Aligned_cols=279 Identities=9% Similarity=0.024 Sum_probs=195.8
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC---CeEEEEecCCCCEEEEEeCC---------CceEEEecc
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA---PVTCLALSSDSNFLVTGSQD---------TTILLWRIH 2068 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~---~VtcLAfSPDG~~LaSGS~D---------GTVrVWDl~ 2068 (2342)
.++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.+ +++.+||+.
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 4789999998776 6899999999999998888887775 49999999999999999875 678899999
Q ss_pred CCcccccc-ccCCCCCCccccccCCCCCceeecCCCccccccC--CceEEecCCCCCe------------------EEEE
Q 000085 2069 RAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE--GPIHVLRGHHREI------------------LCCC 2127 (2342)
Q Consensus 2069 tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~--~~l~~L~GHs~~V------------------t~Va 2127 (2342)
++...... ...+...+..++|||||+.++......+..|+.. ........+...+ .+++
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~ 179 (723)
T 1xfd_A 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (723)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred CCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence 87642111 2223344788999999999988887666666653 3344444444333 7899
Q ss_pred EecCCCEEEEEeCCC----------------------------------cEEEEECCCCeEEEEEecC--------CcEE
Q 000085 2128 VSSDLGVVVSCSDSS----------------------------------DLLLHSIRRGRLIRRLVGV--------DAHA 2165 (2342)
Q Consensus 2128 fSPDg~lLaSGS~DG----------------------------------tIrIWDLrTGklIrsL~gh--------~vss 2165 (2342)
|+|||+.|++++.|+ +|++||+.+++....+..+ .+..
T Consensus 180 ~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (723)
T 1xfd_A 180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM 259 (723)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred ECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEE
Confidence 999999999887653 7999999998866666543 2567
Q ss_pred EEEecCCcEEEEEeCC----CeEEEEEeCCceeeeec-CCCCCCeE----EEEEccCCCEEEEE-e-CCCCCCCCCcccc
Q 000085 2166 VSLSSEGVIMTWNKLQ----HTLSSFTLNGVLVARAK-LPLSGSIG----CMEISLDGHSALIG-V-NSSSTNNGSYDNI 2234 (2342)
Q Consensus 2166 LSfSpDG~IlVwdssd----GsI~I~dlnG~~L~s~~-~~Hs~~It----sLafSPDGk~LaSG-S-~DGs~d~~i~d~L 2234 (2342)
++|||||++++..... ..+.+|++.+....... ..+...+. +++|+|||+.|+.. + .++..
T Consensus 260 ~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-------- 331 (723)
T 1xfd_A 260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR-------- 331 (723)
T ss_dssp EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS--------
T ss_pred EEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC--------
Confidence 9999999987654322 46888888654333222 12344443 78999999987764 2 11100
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEE-CCCCe--EEEEEecCCCCCeEE-EEEecCCCEEEEEeCC---
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD-LHTLK--VFHVLKLGEGQDITA-LALNKDNTNLLVSTAD--- 2307 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD-L~Tgk--~L~tL~lgHs~~Its-LafSPDG~~LaSGSsD--- 2307 (2342)
.....|++|| ..+++ +...+. .+...+.. ++|+|||+.|+..+.+
T Consensus 332 ---------------------------~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 332 ---------------------------GKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp ---------------------------SCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred ---------------------------cceeEEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence 0012577787 34444 133333 23334544 6999999999876655
Q ss_pred CcEEEEeCC
Q 000085 2308 KQLIVFTDP 2316 (2342)
Q Consensus 2308 GsIrVWDi~ 2316 (2342)
+.+++|+++
T Consensus 384 ~~~~l~~~~ 392 (723)
T 1xfd_A 384 RRRQLYSAN 392 (723)
T ss_dssp TCCEEEEEC
T ss_pred cceEEEEEe
Confidence 789999964
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-17 Score=190.58 Aligned_cols=263 Identities=10% Similarity=0.006 Sum_probs=192.2
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCC-C-CeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCC----C
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHC-A-PVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEP----S 2081 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt-~-~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~----~ 2081 (2342)
+++++++.++.|++||..+++.+..+.... . .+.+++|+|+|+++ ++++.++.|.+||+.++.......... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478899999999999999998887776322 2 48899999999765 556678999999999876654442222 1
Q ss_pred CCCccccccCCCCCceeec-------------CCCccccccCC--ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2082 SGMGTPGNSIGSSTPANAS-------------ADKSRRRRIEG--PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s-------------~D~s~~~~i~~--~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
..+..+.++|+|+.++++. ...+..|+... ....+.. ...+.+++|+|++++++++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2567889999998887663 23344455432 3334433 4567889999999988877 689999
Q ss_pred EECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCC-C-----------------------eEEEEEeCCceeeee-cCC
Q 000085 2147 HSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQ-H-----------------------TLSSFTLNGVLVARA-KLP 2200 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssd-G-----------------------sI~I~dlnG~~L~s~-~~~ 2200 (2342)
||+.+++.+..+..+. ...+.++|||..++..... + .+.+|+.....+... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 238 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence 9999999988876543 2234678887644332211 1 356777654333221 122
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEE
Q 000085 2201 LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHV 2280 (2342)
Q Consensus 2201 Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~t 2280 (2342)
+...+.+++|+|||++++++ ++.|.+||+.+++.+..
T Consensus 239 ~~~~~~~~~~s~dg~~l~~~-------------------------------------------~~~v~~~d~~~~~~~~~ 275 (337)
T 1pby_B 239 MDVFYFSTAVNPAKTRAFGA-------------------------------------------YNVLESFDLEKNASIKR 275 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE-------------------------------------------ESEEEEEETTTTEEEEE
T ss_pred CCCceeeEEECCCCCEEEEe-------------------------------------------CCeEEEEECCCCcCcce
Confidence 66788999999999999866 25699999999998888
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2281 LKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2281 L~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
+.. ...+.+++|+|||++|++++.|+.|.+||..+..
T Consensus 276 ~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 276 VPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 873 3467899999999999999999999999976553
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=216.56 Aligned_cols=241 Identities=10% Similarity=0.029 Sum_probs=185.8
Q ss_pred eeEEEEEcCCCCEEEEEEc-CC-----cEEEEecCCcccceecccCCC------------------------CeEEEEec
Q 000085 1998 SSAVVSITHDKEIITGGHV-DG-----SIKLLTSDGAKTLETASGHCA------------------------PVTCLALS 2047 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~-DG-----sIrVWDl~tgkll~tL~GHt~------------------------~VtcLAfS 2047 (2342)
.+..++|||||++|++++. |+ .|++||+.+++....+..|.. .|.+++||
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4566999999999999998 88 899999999987776665543 38999999
Q ss_pred CCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEE
Q 000085 2048 SDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCC 2127 (2342)
Q Consensus 2048 PDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Va 2127 (2342)
|||++|++++. ++|.+||+.++... ....+..|...+.+++
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~--------------------------------------~~~~l~~~~~~~~~~~ 158 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKA--------------------------------------AVRQLTHGEGFATDAK 158 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTT--------------------------------------SCCBCCCSSSCEEEEE
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcc--------------------------------------eEEEcccCCccccccc
Confidence 99999999987 99999999874100 1112355677899999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC------------------cEEEEEecCCcEEEEEeCCC-------
Q 000085 2128 VSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD------------------AHAVSLSSEGVIMTWNKLQH------- 2182 (2342)
Q Consensus 2128 fSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~------------------vssLSfSpDG~IlVwdssdG------- 2182 (2342)
|+|||++|++++. +.|++||+.+++..+....+. ...++|||||+.+++...++
T Consensus 159 ~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 159 LSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE
T ss_pred CCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe
Confidence 9999999998874 699999999988766544332 36689999999888775443
Q ss_pred --------------------------eEEEEEeCC-ceeeeecC--CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2183 --------------------------TLSSFTLNG-VLVARAKL--PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2183 --------------------------sI~I~dlnG-~~L~s~~~--~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
.+.+|++.+ ........ .|...+.+++| |||++|++++.+..
T Consensus 238 ~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~-------- 308 (741)
T 2ecf_A 238 RYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD-------- 308 (741)
T ss_dssp EEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT--------
T ss_pred cCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc--------
Confidence 677778766 54443332 37788999999 99999997753111
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC----CeEEEEEecCCCEEEEEeCCCc
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ----DITALALNKDNTNLLVSTADKQ 2309 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~----~ItsLafSPDG~~LaSGSsDGs 2309 (2342)
..+..|++||+.++++...+. .+.. .+.+++|+|||+++++++.||.
T Consensus 309 ----------------------------~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~ 359 (741)
T 2ecf_A 309 ----------------------------QKKLDLVEVTLASNQQRVLAH-ETSPTWVPLHNSLRFLDDGSILWSSERTGF 359 (741)
T ss_dssp ----------------------------SSEEEEEEEETTTCCEEEEEE-EECSSCCCCCSCCEECTTSCEEEEECTTSS
T ss_pred ----------------------------CCeEEEEEEECCCCceEEEEE-cCCCCcCCcCCceEECCCCeEEEEecCCCc
Confidence 025689999999998877766 4432 4568999999999999999998
Q ss_pred EEEEeCC
Q 000085 2310 LIVFTDP 2316 (2342)
Q Consensus 2310 IrVWDi~ 2316 (2342)
+.||..+
T Consensus 360 ~~l~~~~ 366 (741)
T 2ecf_A 360 QHLYRID 366 (741)
T ss_dssp CEEEEEC
T ss_pred cEEEEEc
Confidence 8888754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-16 Score=182.76 Aligned_cols=269 Identities=12% Similarity=0.118 Sum_probs=188.3
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc-CCcEEEEecCCccc-ceec
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV-DGSIKLLTSDGAKT-LETA 2034 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~-DGsIrVWDl~tgkl-l~tL 2034 (2342)
+..+++.+.++.|++|+..++... ..+. .+.... .++|+|+|+++++++. ++.|++||..+++. ...+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~------~~~~---~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEIL------NQIT---LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEE------EEEE---CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred CEEEEEecCCCeEEEEeCccccee------eeEE---ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 344667778889999997663221 1111 122334 7999999996655554 89999999999988 7777
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCC---ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDT---TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DG---TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
..+..++.+++|+|+|++|+++..++ +|.+||+.++...
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~-------------------------------------- 121 (331)
T 3u4y_A 80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI-------------------------------------- 121 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE--------------------------------------
T ss_pred ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE--------------------------------------
Confidence 77877777799999999999655553 8999999875321
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEE-EEeCCCc-EEEEECCCCeEE-----EEEe-cCCcEEEEEecCCcE-EEEEeCCC
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVV-SCSDSSD-LLLHSIRRGRLI-----RRLV-GVDAHAVSLSSEGVI-MTWNKLQH 2182 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGt-IrIWDLrTGklI-----rsL~-gh~vssLSfSpDG~I-lVwdssdG 2182 (2342)
..+.. ...+.+++|+|+|++++ ++..++. |.+|++.....+ ..+. +.....++++|||+. ++.+..++
T Consensus 122 --~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 198 (331)
T 3u4y_A 122 --STIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN 198 (331)
T ss_dssp --EEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred --EEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC
Confidence 11222 23458999999998554 5556688 999998754332 2222 234688999999985 45555678
Q ss_pred eEEEEEeC-Cce---eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2183 TLSSFTLN-GVL---VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2183 sI~I~dln-G~~---L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
.+.+|++. +.. +... .....+.+++|+|||++++++..
T Consensus 199 ~v~v~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~------------------------------------ 240 (331)
T 3u4y_A 199 SIGILETQNPENITLLNAV--GTNNLPGTIVVSRDGSTVYVLTE------------------------------------ 240 (331)
T ss_dssp EEEEEECSSTTSCEEEEEE--ECSSCCCCEEECTTSSEEEEECS------------------------------------
T ss_pred eEEEEECCCCcccceeeec--cCCCCCceEEECCCCCEEEEEEc------------------------------------
Confidence 99999996 333 3322 24577889999999998876631
Q ss_pred CccCCCCeEEEEECCCCeE--EEEEecC---CCC---CeEEEEEecCCCEEEEEe-CCCcEEEEeCCCC
Q 000085 2259 RFDFPSPSICFLDLHTLKV--FHVLKLG---EGQ---DITALALNKDNTNLLVST-ADKQLIVFTDPAL 2318 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~--L~tL~lg---Hs~---~ItsLafSPDG~~LaSGS-sDGsIrVWDi~sL 2318 (2342)
.++.|.+||+.+++. +..+... +.. ...+++|+|||++|++++ .++.|.||++...
T Consensus 241 ----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 241 ----STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp ----SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred ----CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 146799999999887 4444411 111 235689999999987665 4669999996654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=207.77 Aligned_cols=271 Identities=13% Similarity=0.101 Sum_probs=205.6
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec--cCCccccccccCCC
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI--HRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl--~tg~~i~t~~~~~~ 2081 (2342)
++|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|||++|++++.|++|.+||+ .++....++. ..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cC
Confidence 678889999999999999999999999999884333 899999999999999999999999999 6665544432 34
Q ss_pred CCCccccccC----CCCCceeecC-C-Ccccccc--CCceEEecC----------CC-CCeEEEEEecCCC-EEEEEeCC
Q 000085 2082 SGMGTPGNSI----GSSTPANASA-D-KSRRRRI--EGPIHVLRG----------HH-REILCCCVSSDLG-VVVSCSDS 2141 (2342)
Q Consensus 2082 ~~V~svs~Sp----DG~~Las~s~-D-~s~~~~i--~~~l~~L~G----------Hs-~~Vt~VafSPDg~-lLaSGS~D 2141 (2342)
..+..++++| ||+.++++.. + .+..|+. .+++..+.. |. ..+.++.+++++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 4567889999 9999877763 3 3344543 344555543 22 3788999999765 55677889
Q ss_pred CcEEEEECCCCeEEE--EEec-CCcEEEEEecCCcEEEE-EeCCCeEEEEEeCCce-eeeecC---CCCCCeEEEEEccC
Q 000085 2142 SDLLLHSIRRGRLIR--RLVG-VDAHAVSLSSEGVIMTW-NKLQHTLSSFTLNGVL-VARAKL---PLSGSIGCMEISLD 2213 (2342)
Q Consensus 2142 GtIrIWDLrTGklIr--sL~g-h~vssLSfSpDG~IlVw-dssdGsI~I~dlnG~~-L~s~~~---~Hs~~ItsLafSPD 2213 (2342)
|.|.+||+.+++.+. .+.. .....++|+|||++++. +..++.|.+|+..... +..... +|.+....+ ++|+
T Consensus 302 g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~ 380 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK 380 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT
T ss_pred CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC
Confidence 999999998865433 4432 33678899999996654 4567899999986433 333322 266554444 5677
Q ss_pred -CCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-------CeEEEEEecCC
Q 000085 2214 -GHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-------LKVFHVLKLGE 2285 (2342)
Q Consensus 2214 -Gk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-------gk~L~tL~lgH 2285 (2342)
|..++++.. .|++|.|||+.+ +++++++. +|
T Consensus 381 ~g~~~~s~~~----------------------------------------~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~ 419 (543)
T 1nir_A 381 YGPVWSTSHL----------------------------------------GDGSISLIGTDPKNHPQYAWKKVAELQ-GQ 419 (543)
T ss_dssp TEEEEEEEBS----------------------------------------SSSEEEEEECCTTTCTTTBTSEEEEEE-CS
T ss_pred CccEEEeccC----------------------------------------CCceEEEEEeCCCCCchhcCeEEEEEE-cC
Confidence 555554420 267899999998 89999999 88
Q ss_pred CCCeEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCC
Q 000085 2286 GQDITALALNKDNTNLLVST-------ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2286 s~~ItsLafSPDG~~LaSGS-------sDGsIrVWDi~sLs 2319 (2342)
+..+..++++||+++|++++ .+++|.|||..++.
T Consensus 420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 88899999999999999987 37899999988765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=206.50 Aligned_cols=277 Identities=10% Similarity=-0.007 Sum_probs=195.5
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC-----Ccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR-----AFT 2072 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t-----g~~ 2072 (2342)
.+.+++|+|| +.++.+ .|+.|++||+.+++... +..|...+.+++|||||++|+++ .|++|.+||+.+ +..
T Consensus 83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred CceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 4677999999 655554 36999999999876544 45577789999999999999995 789999999988 654
Q ss_pred ccccccCCC-------------CCCccccccCCCCCceeecCC----------------------------------Ccc
Q 000085 2073 SRTGTIEPS-------------SGMGTPGNSIGSSTPANASAD----------------------------------KSR 2105 (2342)
Q Consensus 2073 i~t~~~~~~-------------~~V~svs~SpDG~~Las~s~D----------------------------------~s~ 2105 (2342)
......... ..+..+.|+|||+.++....+ .+.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 332211111 124788999999999877521 122
Q ss_pred ccccCCc-eEEe---cCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCeEEEEEe-c-CC-----cEEEEEe
Q 000085 2106 RRRIEGP-IHVL---RGHHREILCCCVSSDLGVVVSCSDSS-----DLLLHSIRRGRLIRRLV-G-VD-----AHAVSLS 2169 (2342)
Q Consensus 2106 ~~~i~~~-l~~L---~GHs~~Vt~VafSPDg~lLaSGS~DG-----tIrIWDLrTGklIrsL~-g-h~-----vssLSfS 2169 (2342)
.|+.... ...+ ..|...+.+++|+|||+.|++++.|+ .|++||+.+++....+. . +. ...++|+
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL 318 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence 3443221 1122 25677899999999999999988776 99999999994444332 1 11 2467999
Q ss_pred c--CCcEEEEEeCCCeEEEEEeC--CceeeeecCCCCCCeEE-EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2170 S--EGVIMTWNKLQHTLSSFTLN--GVLVARAKLPLSGSIGC-MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2170 p--DG~IlVwdssdGsI~I~dln--G~~L~s~~~~Hs~~Its-LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
| ||++++....++.+++|.++ +..+.. ...|...+.+ ++|+|||+.|+.++.+..
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~v~~~~~~spdg~~l~~~~~~~~------------------- 378 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWEVTNFAGFDPKGTRLYFESTEAS------------------- 378 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSCEEEEEEECTTSSEEEEEESSSC-------------------
T ss_pred cCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeEEEeeeEEcCCCCEEEEEecCCC-------------------
Confidence 9 99988777778877888764 444433 3346677876 799999998887652211
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD----KQLIVFTDPAL 2318 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD----GsIrVWDi~sL 2318 (2342)
.....|+.||+.+++ ...+ .|...+.+++|+|||++|+.++.+ +.|++|+..+.
T Consensus 379 -----------------~~~~~l~~~d~~~~~-~~~l--~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 379 -----------------PLERHFYCIDIKGGK-TKDL--TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp -----------------TTCBEEEEEETTCCC-CEES--CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred -----------------CceEEEEEEEcCCCC-ceec--cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 002368888888776 3333 367789999999999998876443 56999997554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-16 Score=217.82 Aligned_cols=343 Identities=12% Similarity=0.047 Sum_probs=229.9
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
|..+..+++++.++.+++|....... ....+..+. .+.+.+|+|||+.|+++ .++.|++|++...+ +..
T Consensus 211 ~s~d~l~~~~~~dg~~~l~~~~~~g~-----~~~~l~~~~----~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~ 279 (1045)
T 1k32_A 211 IVGHRIYFITDIDGFGQIYSTDLDGK-----DLRKHTSFT----DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEK 279 (1045)
T ss_dssp EETTEEEEEECTTSSCEEEEEETTSC-----SCEECCCCC----SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEE
T ss_pred EeCCEEEEEEeccCceEEEEEeCCCC-----cceEecCCC----CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eee
Confidence 33344555666777888886432100 111222222 23347999999988887 49999999995443 335
Q ss_pred ccc-----------CCCCeEEEEec-CCCCEEEEEeCCCceEEEeccCCccccccccCCCC-CCccccccCCCCCceeec
Q 000085 2034 ASG-----------HCAPVTCLALS-SDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS-GMGTPGNSIGSSTPANAS 2100 (2342)
Q Consensus 2034 L~G-----------Ht~~VtcLAfS-PDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~-~V~svs~SpDG~~Las~s 2100 (2342)
+.+ |...|.+++|+ |||++|++++ ++.|.+|++.++.... ...+.. .+..+.|+ ||+.++...
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~s-dg~~l~~~s 355 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGD-TKVAFIHGT 355 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--CSCCSCEEEEEECSS-SEEEEEEEE
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE--ccCCCcceEEeeeEc-CCCeEEEEE
Confidence 554 45579999999 9999999988 8899999998764322 223344 67788899 998887766
Q ss_pred CCC-cc-cccc-CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEE
Q 000085 2101 ADK-SR-RRRI-EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIM 2175 (2342)
Q Consensus 2101 ~D~-s~-~~~i-~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~Il 2175 (2342)
.+. .. .++. ......+.+|...+.+++|+|||++|++++.|+.|++||+.+++....+.+|. +..++|||||+.+
T Consensus 356 ~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 356 REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 435 (1045)
T ss_dssp TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeE
Confidence 532 22 2333 23344555888899999999999999999999999999999999888776654 5789999999998
Q ss_pred EEEeCC----------CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc---c-------c--
Q 000085 2176 TWNKLQ----------HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY---D-------N-- 2233 (2342)
Q Consensus 2176 Vwdssd----------GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~---d-------~-- 2233 (2342)
++...+ +.+++|++.+..+. ....|...+.+++|+|||++|+.++.++....+.. + .
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~~~-~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 514 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEE
T ss_pred EEEecCccccccCCCCCeEEEEECCCCcEE-EeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeE
Confidence 887654 38999999865533 33447788999999999999998886443211100 0 0
Q ss_pred ------------------------ccccCCC------------CCCccccccccccccCCC---------CccCCCCeEE
Q 000085 2234 ------------------------IQGLNSK------------QSGTEDFDLASDQSVDNN---------RFDFPSPSIC 2268 (2342)
Q Consensus 2234 ------------------------Lw~l~~~------------~~~~iaFspd~~~s~ss~---------~ias~DGsIr 2268 (2342)
.+++... ....+.++++........ ........|.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~ 594 (1045)
T 1k32_A 515 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 594 (1045)
T ss_dssp EEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEE
T ss_pred EEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEE
Confidence 0111110 001112233221111000 0011255788
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+||+.+++... +. ..+.+++|||||++|++++.| .|++|+....
T Consensus 595 ~~d~~~~~~~~-l~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~ 638 (1045)
T 1k32_A 595 KYDVKTRKVTE-VK----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEK 638 (1045)
T ss_dssp EEETTTCCEEE-EE----EEEEEEEECTTSCEEEEEETT-SCEEEEESSC
T ss_pred EEECCCCcEEE-ee----cCcceEEECCCCCEEEEEcCC-cEEEEeCccC
Confidence 89998887532 22 468899999999999999877 8999997544
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-16 Score=183.19 Aligned_cols=235 Identities=14% Similarity=0.152 Sum_probs=177.1
Q ss_pred EEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCC
Q 000085 2003 SITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2003 afSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
.|.++++ ++++++.++.|++||..+++.+..+..+...+ +++|+|+|+++++++. +++|.+||..++..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-------- 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-------- 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------
Confidence 3455555 57788899999999999999988887777777 9999999997776665 89999999987521
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCeEEEE
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS---DLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG---tIrIWDLrTGklIrs 2157 (2342)
....+..+..+..+++|+|++++++++..++ .|.+||+.+++.+..
T Consensus 75 -------------------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~ 123 (331)
T 3u4y_A 75 -------------------------------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST 123 (331)
T ss_dssp -------------------------------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred -------------------------------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence 0223344555555599999999999655553 899999999999888
Q ss_pred EecC-CcEEEEEecCCc-EEEEEeCCCe-EEEEEeCC--ceee--eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2158 LVGV-DAHAVSLSSEGV-IMTWNKLQHT-LSSFTLNG--VLVA--RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2158 L~gh-~vssLSfSpDG~-IlVwdssdGs-I~I~dlnG--~~L~--s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
+..+ ....++++|||+ +++.+..++. +.+|+++. .... .........+.+++|+|||+++++++.
T Consensus 124 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-------- 195 (331)
T 3u4y_A 124 IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL-------- 195 (331)
T ss_dssp EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET--------
T ss_pred EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC--------
Confidence 8654 468899999997 5555566677 99999863 1111 111234566899999999998776641
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE---EEEEecCCCCCeEEEEEecCCCEEEEEe-C
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV---FHVLKLGEGQDITALALNKDNTNLLVST-A 2306 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~---L~tL~lgHs~~ItsLafSPDG~~LaSGS-s 2306 (2342)
.++.|.+||+.+++. +..+. +...+.+++|+|||++|++++ .
T Consensus 196 --------------------------------~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 196 --------------------------------IGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp --------------------------------TTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSS
T ss_pred --------------------------------CCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcC
Confidence 157899999999887 77776 346788999999999877665 5
Q ss_pred CCcEEEEeCCCCC
Q 000085 2307 DKQLIVFTDPALS 2319 (2342)
Q Consensus 2307 DGsIrVWDi~sLs 2319 (2342)
++.|.+||..+..
T Consensus 242 ~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 242 TVDVFNFNQLSGT 254 (331)
T ss_dssp EEEEEEEETTTTE
T ss_pred CCEEEEEECCCCc
Confidence 7889999976543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-16 Score=184.72 Aligned_cols=259 Identities=10% Similarity=0.057 Sum_probs=191.0
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCC-CCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHC-APVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt-~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
++++++++++++++.++.|++||..+++.+..+..+. ..+..++|+|+|+++ ++++.+++|.+||+.++.........
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 4678888999999999999999999998888776543 257899999999865 45567899999999887655443222
Q ss_pred C-----CCCCccccccCCCCCceeecC-------------CCccccccCC-----ceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2080 P-----SSGMGTPGNSIGSSTPANASA-------------DKSRRRRIEG-----PIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2080 ~-----~~~V~svs~SpDG~~Las~s~-------------D~s~~~~i~~-----~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
. ...+..+.++|+|+.++++.. ..+..|+... .+..+. +...+.+++|+|+++ ++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EE
Confidence 2 223678899999998877763 3334454422 223333 344688999999999 55
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCC--------------------------cEEEEEecCC-----------cEEEEEe
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLVGVD--------------------------AHAVSLSSEG-----------VIMTWNK 2179 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~gh~--------------------------vssLSfSpDG-----------~IlVwds 2179 (2342)
.++. .|.+||+.+++.+..+..+. ...+++++++ .++.++.
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 5544 49999999999888776431 2335666544 2333666
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
.++.+..+++.. +...+.+++|+| ||++++++
T Consensus 241 ~~~~~~~~~~~~---------~~~~~~~~~~sp~dg~~l~~~-------------------------------------- 273 (349)
T 1jmx_B 241 KTGKTHTQEFAD---------LTELYFTGLRSPKDPNQIYGV-------------------------------------- 273 (349)
T ss_dssp TTCCEEEEEEEE---------CSSCEEEEEECSSCTTEEEEE--------------------------------------
T ss_pred cCCcEEeccccc---------CCCcceeeEecCCCCCEEEEE--------------------------------------
Confidence 677777776632 456788999999 99998866
Q ss_pred CccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2259 RFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||..+.
T Consensus 274 -----~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 274 -----LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp -----ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred -----cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 24699999999998888873 345789999999999999999999999997654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=209.34 Aligned_cols=303 Identities=10% Similarity=-0.031 Sum_probs=197.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcC---------CcEEEEec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVD---------GSIKLLTS 2025 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~D---------GsIrVWDl 2025 (2342)
++|+.+++ +.|+++++|+..++... ..+..+......+..++|||||++|++++.+ +.|++||+
T Consensus 26 pdg~~~~~-~~dg~i~~~d~~~g~~~------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 26 SDTEFIYR-EQKGTVRLWNVETNTST------VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp SSSCBCCC-CSSSCEEEBCGGGCCCE------EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred CCCcEEEE-eCCCCEEEEECCCCcEE------EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence 45665555 56789999997663221 1111222110125569999999999998764 78889999
Q ss_pred CCccc--ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCC------------------CCc
Q 000085 2026 DGAKT--LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSS------------------GMG 2085 (2342)
Q Consensus 2026 ~tgkl--l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~------------------~V~ 2085 (2342)
.+++. +....+|...|.+++|||||++|++++. ++|.+||+.++....... .+.. .+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred CCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcc
Confidence 99876 3333456667999999999999999986 799999998865433221 1111 236
Q ss_pred cccccCCCCCceeecCCC-----------------------------------ccccccC--CceEEecCC------CCC
Q 000085 2086 TPGNSIGSSTPANASADK-----------------------------------SRRRRIE--GPIHVLRGH------HRE 2122 (2342)
Q Consensus 2086 svs~SpDG~~Las~s~D~-----------------------------------s~~~~i~--~~l~~L~GH------s~~ 2122 (2342)
.+.|+|||+.++....+. +..|+.. .....+..| ...
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence 789999999987765432 1223332 222444443 567
Q ss_pred eEEEEEecCCCEEEEEeC----CCcEEEEECCCCeEEEEEecC-C--c----EEEEEecCCcEEEE--EeCCC------e
Q 000085 2123 ILCCCVSSDLGVVVSCSD----SSDLLLHSIRRGRLIRRLVGV-D--A----HAVSLSSEGVIMTW--NKLQH------T 2183 (2342)
Q Consensus 2123 Vt~VafSPDg~lLaSGS~----DGtIrIWDLrTGklIrsL~gh-~--v----ssLSfSpDG~IlVw--dssdG------s 2183 (2342)
+.+++|+|||+++++.+. +..|++||+.++++...+..+ . + ..++|+|||+.+++ ...++ .
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 899999999998877653 357999999999887766432 2 1 37899999996665 34556 4
Q ss_pred EEEEE-eCCce---eeeecCCCCCCeEE-EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2184 LSSFT-LNGVL---VARAKLPLSGSIGC-MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2184 I~I~d-lnG~~---L~s~~~~Hs~~Its-LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
+.+|+ ..+.. .... ..+...+.. ++|+|||+.|+..+.+..
T Consensus 337 l~~~d~~~~~~~~~~~~l-~~~~~~~~~~~~~spdg~~l~~~~~~~~--------------------------------- 382 (723)
T 1xfd_A 337 ITVSSSQPNSSNDNIQSI-TSGDWDVTKILAYDEKGNKIYFLSTEDL--------------------------------- 382 (723)
T ss_dssp EEEECSSCCSSSCCCCBS-CCSSSCEEEEEEEETTTTEEEEEESSSC---------------------------------
T ss_pred EEEEeccCCCCccceeEe-ecCCeEEEeeeEEcCCCCEEEEEEcCCC---------------------------------
Confidence 55666 33433 2222 223344554 699999999986653211
Q ss_pred CccCCCCeEEEEECCCC--eEEEEEecC--CCCCeEEEEEecCCCEEEEEe
Q 000085 2259 RFDFPSPSICFLDLHTL--KVFHVLKLG--EGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~Tg--k~L~tL~lg--Hs~~ItsLafSPDG~~LaSGS 2305 (2342)
.+.+++|++... .....+... |...+..++|+|||++|+...
T Consensus 383 -----~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 383 -----PRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp -----TTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred -----CcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 134566666432 122223211 566789999999999888653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=181.02 Aligned_cols=263 Identities=9% Similarity=0.034 Sum_probs=196.7
Q ss_pred EEEEEcCCCCEEEEEEc-------CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCc
Q 000085 2000 AVVSITHDKEIITGGHV-------DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~-------DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~ 2071 (2342)
..++|+|+|+++++++. ++.|.+||..+++.+..+... ..+.+++|+|+|++++ ++..+++|.+||..++.
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 122 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE 122 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe
Confidence 45899999998777764 568999999999888877643 4478899999999554 55668999999999877
Q ss_pred cccccccCCCC--------CCccccccCCCCCceeecC--CC-ccccccC--CceEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2072 TSRTGTIEPSS--------GMGTPGNSIGSSTPANASA--DK-SRRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2072 ~i~t~~~~~~~--------~V~svs~SpDG~~Las~s~--D~-s~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSG 2138 (2342)
........... .+..+.++|+|+.+++... ++ +..++.. +....+..+...+.+++|+|++++++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 202 (353)
T 3vgz_A 123 VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTT 202 (353)
T ss_dssp EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEE
T ss_pred eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEE
Confidence 65544222111 2466899999997766552 22 4445543 3445555566678999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEEec----C--CcEEEEEecCCcEEEEE-eCCCeEEEEEeC-CceeeeecCCCCCCeEEEEE
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLVG----V--DAHAVSLSSEGVIMTWN-KLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~g----h--~vssLSfSpDG~IlVwd-ssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLaf 2210 (2342)
+.++.|.+||+.+++.+..+.. + ....++++++|..++.. ..++.+.+|+.. +..+.....+. ..+++|
T Consensus 203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 279 (353)
T 3vgz_A 203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLF 279 (353)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEE
T ss_pred cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEE
Confidence 9999999999999999888764 2 24568999999865554 445899999986 44444333222 357999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
+|+|++++++.. .++.|.+||..+++.+..+. ....+.
T Consensus 280 s~dg~~l~v~~~----------------------------------------~~~~v~~~d~~~~~~~~~~~--~~~~~~ 317 (353)
T 3vgz_A 280 NPARNEAYVTHR----------------------------------------QAGKVSVIDAKSYKVVKTFD--TPTHPN 317 (353)
T ss_dssp ETTTTEEEEEET----------------------------------------TTTEEEEEETTTTEEEEEEE--CCSEEE
T ss_pred CCCCCEEEEEEC----------------------------------------CCCeEEEEECCCCeEEEEEe--cCCCCC
Confidence 999998776641 15789999999999988887 344789
Q ss_pred EEEEecCCCEEEEEeCCC
Q 000085 2291 ALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDG 2308 (2342)
+++|+|||++|+++..++
T Consensus 318 ~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 318 SLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECTTSCEEEEEEECC
T ss_pred eEEEcCCCCEEEEEEccc
Confidence 999999999888776553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-16 Score=177.46 Aligned_cols=249 Identities=12% Similarity=0.026 Sum_probs=179.1
Q ss_pred cCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC-cccceecccC-CCC
Q 000085 1963 PASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG-AKTLETASGH-CAP 2040 (2342)
Q Consensus 1963 sSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t-gkll~tL~GH-t~~ 2040 (2342)
.+.++.+++|+..++. ...+..+. ..+.+++|+|+|++|++++ ++.|++||+.+ ++......+| ...
T Consensus 18 ~~~~~~i~~~d~~~~~-------~~~~~~~~---~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRK-------MRVVWQTP---ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp CCCCEEEEEEETTTTE-------EEEEEEES---SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred CCcceeEEEEeCCCCc-------eeeeccCC---cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence 4567899999866521 11122233 3456799999999999986 88999999999 8877777666 478
Q ss_pred eEEEEecCCCCEEEEEe--CCCceEEEeccCCccccccccCCCCCCccccccCCCCCce-eecCCCc-cccc--c-CCce
Q 000085 2041 VTCLALSSDSNFLVTGS--QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPA-NASADKS-RRRR--I-EGPI 2113 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS--~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~La-s~s~D~s-~~~~--i-~~~l 2113 (2342)
|.+++|+|+|++|++++ .++.+.||.+......... ......+..+.++|+++.++ +...++. ..|. . ....
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 99999999999999999 4467777776532211111 11222367788999999876 4444432 3343 2 3456
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC-CCeEEEEEecCC--cEEEEEecCCcEEEEEeCC--------
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIR-RGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQ-------- 2181 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLr-TGklIrsL~gh~--vssLSfSpDG~IlVwdssd-------- 2181 (2342)
..+..|...+.+++|+|+++.++.++ .|+.+.+|++. .+..+..+..+. +..++|+|+|+.+++...+
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 67778889999999999999887666 59999999986 555666666544 5678999999988877654
Q ss_pred ---CeEEEEEeCCceeeeec--CCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2182 ---HTLSSFTLNGVLVARAK--LPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2182 ---GsI~I~dlnG~~L~s~~--~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
+.+.+|++.+....... ..|...+.+++|+|+|++|++++.+
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 46899998754332222 2478889999999999999988744
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-15 Score=179.90 Aligned_cols=248 Identities=14% Similarity=0.210 Sum_probs=171.5
Q ss_pred eEEEEEcCCCCEEEEEEc--CCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCCccc
Q 000085 1999 SAVVSITHDKEIITGGHV--DGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~--DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i 2073 (2342)
...++|+|||++++++.. ++.|++|++.+++ .+..+..|...+.+++|+|||++|++++ .+++|.+|++......
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 345999999994444432 6899999998765 4445556788899999999999998888 7899999999642111
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR-RG 2152 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr-TG 2152 (2342)
.... .....+ ..+. ...+...+.+++|+|+|++++++..++.|.+||+. ++
T Consensus 122 ~~~~--------------------~~~~~~------~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 122 TLTD--------------------TVQHSG------HGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp EEEE--------------------EEECCC------CCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred eecc--------------------eeecCC------CCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 1000 000000 0000 11234568899999999977777788999999998 56
Q ss_pred eEEE--EEec---CCcEEEEEecCCcEE-EEEeCCCeEEEEEeCC--ceee---eec-CCC----CCCeEEEEEccCCCE
Q 000085 2153 RLIR--RLVG---VDAHAVSLSSEGVIM-TWNKLQHTLSSFTLNG--VLVA---RAK-LPL----SGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2153 klIr--sL~g---h~vssLSfSpDG~Il-VwdssdGsI~I~dlnG--~~L~---s~~-~~H----s~~ItsLafSPDGk~ 2216 (2342)
+... .+.. .....++|+|||+.+ +.+..++.+.+|+++. ..+. ... .+. ...+..++|+|||++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 5432 2222 246789999999954 4466778999999863 2221 111 111 145889999999998
Q ss_pred EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC---CCeEEEEEecCCCCCeEEEE
Q 000085 2217 ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH---TLKVFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2217 LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~---Tgk~L~tL~lgHs~~ItsLa 2293 (2342)
|+++.. .++.|.+||+. +.+.+..+. .+...+.+++
T Consensus 254 l~v~~~----------------------------------------~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~ 292 (347)
T 3hfq_A 254 LYVSNR----------------------------------------GYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFD 292 (347)
T ss_dssp EEEEEE----------------------------------------TTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEE
T ss_pred EEEEeC----------------------------------------CCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEE
Confidence 865531 15679999987 335666666 5666789999
Q ss_pred EecCCCEEEEEeCC-CcEEEEeC
Q 000085 2294 LNKDNTNLLVSTAD-KQLIVFTD 2315 (2342)
Q Consensus 2294 fSPDG~~LaSGSsD-GsIrVWDi 2315 (2342)
|+|||++|++++.+ +.|.+|+.
T Consensus 293 ~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 293 LDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEEcCCCcEEEEEE
Confidence 99999999888765 89999964
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=198.21 Aligned_cols=265 Identities=10% Similarity=0.028 Sum_probs=191.0
Q ss_pred eeEEEEEcCCCCEEEEEEc-CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccC--Cc
Q 000085 1998 SSAVVSITHDKEIITGGHV-DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHR--AF 2071 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~-DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~t--g~ 2071 (2342)
.+.+++|+|||+.||+++. ||+++||++++++..+....|...|.+++|+|| +++++++. +....+|.+.. ..
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 3667999999999998876 999999999776655444334368999999999 88888776 56667776654 22
Q ss_pred cccccccCCCCCCccccccCCCCCc--eeecCCCccccccCC-ceEEecCCCCCeEEEEEecCCCEEEEEeCC----CcE
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTP--ANASADKSRRRRIEG-PIHVLRGHHREILCCCVSSDLGVVVSCSDS----SDL 2144 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~L--as~s~D~s~~~~i~~-~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D----GtI 2144 (2342)
..... .........+++|+|+.+ ++...+....|+... ....+..+.. .+++|+|||+++++++.| +.|
T Consensus 102 ~~~~l--~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i 177 (582)
T 3o4h_A 102 EEQRL--EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSL 177 (582)
T ss_dssp CCEEC--TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEE
T ss_pred ccccc--cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEE
Confidence 22222 112233456788888654 444555555666532 2333333333 889999999999988877 789
Q ss_pred EEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCC--eEEEEEeCCceeeeecCCCCCCeEEEE--------Ecc
Q 000085 2145 LLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQH--TLSSFTLNGVLVARAKLPLSGSIGCME--------ISL 2212 (2342)
Q Consensus 2145 rIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdG--sI~I~dlnG~~L~s~~~~Hs~~ItsLa--------fSP 2212 (2342)
++||+.+++.. .+..+. +..++|||||+.++....++ .|++|++.+.... ....|...+.+++ |+|
T Consensus 178 ~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp 255 (582)
T 3o4h_A 178 FTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP 255 (582)
T ss_dssp EEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT
T ss_pred EEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC
Confidence 99999988765 555543 57899999999988777777 7889998765555 4444777777777 999
Q ss_pred CCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE
Q 000085 2213 DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2213 DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL 2292 (2342)
||.++++++. |+.+++|++ ++... .....|.++
T Consensus 256 dg~~~~~~~~-----------------------------------------~g~~~l~~~--g~~~~----~~~~~v~~~ 288 (582)
T 3o4h_A 256 DGRLAVVARR-----------------------------------------EGRSAVFID--GERVE----APQGNHGRV 288 (582)
T ss_dssp TSCEEEEEEE-----------------------------------------TTEEEEEET--TEEEC----CCSSEEEEE
T ss_pred CCcEEEEEEc-----------------------------------------CCcEEEEEE--CCeec----cCCCceEEE
Confidence 9977776652 678999999 66544 234678999
Q ss_pred EEecCCCEEEEEeCCC---cEEEEeCCC
Q 000085 2293 ALNKDNTNLLVSTADK---QLIVFTDPA 2317 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDG---sIrVWDi~s 2317 (2342)
+|+ +++.+++++.+. .|.+|+..+
T Consensus 289 ~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 289 VLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred Eec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999 999999888775 477777543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=183.65 Aligned_cols=193 Identities=11% Similarity=0.095 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccc----------ce-----ecccCCCCeEEEEecCCCCEEE----EEeCC
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKT----------LE-----TASGHCAPVTCLALSSDSNFLV----TGSQD 2059 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkl----------l~-----tL~GHt~~VtcLAfSPDG~~La----SGS~D 2059 (2342)
++++++++++.++++|+.|+ ++||+...... +. ....|...|++++|+|+|++|+ +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 45699999999999999888 89987542110 00 1123567899999999999999 88999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSC 2138 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSG 2138 (2342)
++|+|||+.+....... ..........+.+|...|++++|+|+ +.++++|
T Consensus 118 ~~v~iwd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQ-----------------------------QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp EEEEEEEHHHHHCTTCS-----------------------------SCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ceEEEEEccccccCCcC-----------------------------CcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 99999999764100000 00000123456789999999999998 8899999
Q ss_pred eCCCcEEEEECCCCeEEEEEecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC------CCCCeEEEEE
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP------LSGSIGCMEI 2210 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~------Hs~~ItsLaf 2210 (2342)
+.||+|++||++++..+....+| .+..++|+|+|..++.+..+|.|++|+..+......... |...|.+++|
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEE
Confidence 99999999999999777666655 488999999999999999999999999985544332211 2348999999
Q ss_pred ccCCCEEEEEe
Q 000085 2211 SLDGHSALIGV 2221 (2342)
Q Consensus 2211 SPDGk~LaSGS 2221 (2342)
++++.++++.+
T Consensus 249 ~~~~~~l~~~~ 259 (434)
T 2oit_A 249 IGTYVFAIVYA 259 (434)
T ss_dssp EETTEEEEEEE
T ss_pred ecCceEEEEEc
Confidence 99998887543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=201.69 Aligned_cols=273 Identities=12% Similarity=0.074 Sum_probs=190.9
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCC---CeEEEEecCCCCEEEEEeC---------CCceEEEecc
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCA---PVTCLALSSDSNFLVTGSQ---------DTTILLWRIH 2068 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~---~VtcLAfSPDG~~LaSGS~---------DGTVrVWDl~ 2068 (2342)
.++|+|||++++++ .|++|++||+.+++....+.+|.. .|.+++|||||++|++++. |++|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 37899999766655 699999999999988777776654 4899999999999999876 7999999999
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccC--CceEEe-cCCCCCe-----------------EEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE--GPIHVL-RGHHREI-----------------LCCCV 2128 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~--~~l~~L-~GHs~~V-----------------t~Vaf 2128 (2342)
++...... .....+..++|||||+.++....+.+..|+.. ...... .++...| .+++|
T Consensus 99 ~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGN--ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSS--CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCccccce--ecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 87652111 11245788999999999988876666666652 222211 2232222 48999
Q ss_pred ecCCCEEEEEeCCC----------------------------------cEEEEECCCCeEE--EEE------ecCC--cE
Q 000085 2129 SSDLGVVVSCSDSS----------------------------------DLLLHSIRRGRLI--RRL------VGVD--AH 2164 (2342)
Q Consensus 2129 SPDg~lLaSGS~DG----------------------------------tIrIWDLrTGklI--rsL------~gh~--vs 2164 (2342)
+|||+.|++++.|. .|++||+.+++.+ ..+ .++. +.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999988653 7889999888652 122 1232 57
Q ss_pred EEEEecCCcEEEEEeC--C--CeEEEEE----eCCceeeeec----CCCCCCeE-----EEEEccCCCEEEEEeCCCCCC
Q 000085 2165 AVSLSSEGVIMTWNKL--Q--HTLSSFT----LNGVLVARAK----LPLSGSIG-----CMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdss--d--GsI~I~d----lnG~~L~s~~----~~Hs~~It-----sLafSPDGk~LaSGS~DGs~d 2227 (2342)
.++|||||++++.... . ..|.+|+ ..+....... ..|...+. ++.|+|||+.++..+.+..
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-- 334 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD-- 334 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT--
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC--
Confidence 8899999987765322 2 2477788 6544433333 24666676 8899999997665321111
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
....|.+||+.+++ ...+. .+...+..+.++ +++.|+..+.+
T Consensus 335 -----------------------------------g~~~l~~~~~~~~~-~~~lt-~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 335 -----------------------------------GYKHIHYIKDTVEN-AIQIT-SGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp -----------------------------------SCEEEEEESSCSTT-CEECS-CSSSCEEEEEEE-CSSEEEEEESC
T ss_pred -----------------------------------CceEEEEEECCCCc-eEecc-cCceEEEEEEEE-eCCEEEEEEec
Confidence 02468888988776 34444 455668888888 88888877665
Q ss_pred -----CcEEEEeCC
Q 000085 2308 -----KQLIVFTDP 2316 (2342)
Q Consensus 2308 -----GsIrVWDi~ 2316 (2342)
+.+.+|.++
T Consensus 377 ~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 377 FEEYPGRRNIYRIS 390 (719)
T ss_dssp GGGCTTCBEEEEEE
T ss_pred CCCCCceEEEEEEe
Confidence 889999854
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-14 Score=168.34 Aligned_cols=227 Identities=11% Similarity=0.101 Sum_probs=161.0
Q ss_pred EEEEEEcCCcEEEEecC-Ccc--cceecccCCCCeEEEEecCCCCEEEEEeCC-CceEEEecc--CCccccccccCCCCC
Q 000085 2010 IITGGHVDGSIKLLTSD-GAK--TLETASGHCAPVTCLALSSDSNFLVTGSQD-TTILLWRIH--RAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~-tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~D-GTVrVWDl~--tg~~i~t~~~~~~~~ 2083 (2342)
++++++.|+.|++|+++ +++ .+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------- 74 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------- 74 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-----------
Confidence 45555789999999995 332 2333 3477889999999999999998887 999999997 3210
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEC---CCCeEEEEEe
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSI---RRGRLIRRLV 2159 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDL---rTGklIrsL~ 2159 (2342)
..+..+..+. .+.+++|+|+++++++++ .++.|.+||+ .+++.+..+.
T Consensus 75 ---------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 126 (343)
T 1ri6_A 75 ---------------------------TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 126 (343)
T ss_dssp ---------------------------EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred ---------------------------eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc
Confidence 0122233333 778999999999886665 4889999999 4445555555
Q ss_pred cC-CcEEEEEecCCcEEEEEe-CCCeEEEEEeCC-ceee-----eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2160 GV-DAHAVSLSSEGVIMTWNK-LQHTLSSFTLNG-VLVA-----RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2160 gh-~vssLSfSpDG~IlVwds-sdGsI~I~dlnG-~~L~-----s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+ .+..++++|+|+.++... .++.+.+|++.. ..+. .........+.+++|+|+|+++++++.
T Consensus 127 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--------- 197 (343)
T 1ri6_A 127 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--------- 197 (343)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---------
T ss_pred CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---------
Confidence 43 367899999998666555 789999999974 3222 222224557899999999998876641
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC--CeE--EEEEe---cCC--CCCeEEEEEecCCCEEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT--LKV--FHVLK---LGE--GQDITALALNKDNTNLL 2302 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T--gk~--L~tL~---lgH--s~~ItsLafSPDG~~La 2302 (2342)
.++.|.+||+.. ++. ...+. .++ ...+.+++|+|+|++|+
T Consensus 198 -------------------------------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 198 -------------------------------LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp -------------------------------TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred -------------------------------CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence 156799999843 432 22222 111 23577899999999888
Q ss_pred EE-eCCCcEEEEeCC
Q 000085 2303 VS-TADKQLIVFTDP 2316 (2342)
Q Consensus 2303 SG-SsDGsIrVWDi~ 2316 (2342)
++ ..|+.|.+|+..
T Consensus 247 v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 247 ACDRTASLITVFSVS 261 (343)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEecCCCEEEEEEEc
Confidence 55 479999999976
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=190.73 Aligned_cols=255 Identities=10% Similarity=0.012 Sum_probs=174.8
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCC-----
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDG----- 2027 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~t----- 2027 (2342)
.|..++.++.+ .++.+++|+..++. ...+..+...+ ..++|||||+.|+++ .|+.|++||+.+
T Consensus 88 ~~spd~~~~~~-~~~~i~~~d~~~~~-------~~~l~~~~~~~---~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 88 LDAGRGLVVLF-TQGGLVGFDMLARK-------VTYLFDTNEET---ASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTTE-------EEEEECCTTCC---TTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred EECCCCeEEEE-ECCEEEEEECCCCc-------eEEccCCcccc---cCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 34333444444 34799999976521 11122222333 348999999999985 689999999998
Q ss_pred cccceecccCCCC--------------eEEEEecCCCCEEEEEe---------------------------------CCC
Q 000085 2028 AKTLETASGHCAP--------------VTCLALSSDSNFLVTGS---------------------------------QDT 2060 (2342)
Q Consensus 2028 gkll~tL~GHt~~--------------VtcLAfSPDG~~LaSGS---------------------------------~DG 2060 (2342)
++..+....+... +.+++|+|||++|++++ .+.
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 8776655544443 48999999999999998 457
Q ss_pred ceEEEeccCCccccccc-cCCCCCCccccccCCCCCceeecCCC------ccccccCC--ceEEec--CCCC---CeEEE
Q 000085 2061 TILLWRIHRAFTSRTGT-IEPSSGMGTPGNSIGSSTPANASADK------SRRRRIEG--PIHVLR--GHHR---EILCC 2126 (2342)
Q Consensus 2061 TVrVWDl~tg~~i~t~~-~~~~~~V~svs~SpDG~~Las~s~D~------s~~~~i~~--~l~~L~--GHs~---~Vt~V 2126 (2342)
+|.+||+.++....... ..+...+..+.|+|||+.+++...+. +..|+... ....+. .+.. .+.++
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 89999998875433222 23445677899999999887765442 23354432 223332 2222 24678
Q ss_pred EEec--CCCEEEEEeCCCcEEEEECC-CCeEEEEEecCC--cEE-EEEecCCcEEEEEeCC-C----eEEEEEeCCceee
Q 000085 2127 CVSS--DLGVVVSCSDSSDLLLHSIR-RGRLIRRLVGVD--AHA-VSLSSEGVIMTWNKLQ-H----TLSSFTLNGVLVA 2195 (2342)
Q Consensus 2127 afSP--Dg~lLaSGS~DGtIrIWDLr-TGklIrsL~gh~--vss-LSfSpDG~IlVwdssd-G----sI~I~dlnG~~L~ 2195 (2342)
+|+| ||+++++++.||.+.+|++. ++..++.+..+. +.. ++|++||..+++...+ + .+..|+..+..+.
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 395 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK 395 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce
Confidence 9999 99999999999999999886 677777776654 333 7999999877665443 3 4555565554333
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. ..|...+.+++|+|||++++.++
T Consensus 396 ~--l~~~~~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 396 D--LTPESGMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp E--SCCSSSEEEEEECTTSSEEEEEE
T ss_pred e--ccCCCceEEEEECCCCCEEEEEe
Confidence 2 33778899999999999998764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-13 Score=163.22 Aligned_cols=249 Identities=12% Similarity=0.135 Sum_probs=166.1
Q ss_pred eEEEEEcCCCCEEEEEEcC----CcEEEEecCC--ccc--ceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccC
Q 000085 1999 SAVVSITHDKEIITGGHVD----GSIKLLTSDG--AKT--LETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHR 2069 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D----GsIrVWDl~t--gkl--l~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~t 2069 (2342)
...++|+|||++|++++.+ +.|.+|+++. ++. +.....+......+++ ++++|++++ .+++|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 3458999999999888876 7999998875 432 3344445667788888 788877776 688999999975
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEE
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHS 2148 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWD 2148 (2342)
......... .... .+ . . ......+...+.+++|+|+|+++++++ .++.|.+|+
T Consensus 130 ~g~~~~~~~-------~~~~--~g----------~------~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 183 (361)
T 3scy_A 130 DGALLPASD-------VIEF--KG----------S------G-PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFN 183 (361)
T ss_dssp TSCBCSCSE-------EEEC--CC----------C------C-SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCcCcccce-------eEEc--cC----------C------C-CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 322211100 0000 00 0 0 000122344578999999999665554 589999998
Q ss_pred CCCCe-------EE-----EEEe---cCCcEEEEEecCCcEEEEEe-CCCeEEEEEeCCceeee---ec--CCCCCCeEE
Q 000085 2149 IRRGR-------LI-----RRLV---GVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLNGVLVAR---AK--LPLSGSIGC 2207 (2342)
Q Consensus 2149 LrTGk-------lI-----rsL~---gh~vssLSfSpDG~IlVwds-sdGsI~I~dlnG~~L~s---~~--~~Hs~~Its 2207 (2342)
+.... .. ..+. +.....++|+|||+.++... .++.+.+|++....+.. .. ..+...+.+
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 263 (361)
T 3scy_A 184 INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGD 263 (361)
T ss_dssp ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence 87533 11 1221 22467899999998665554 68899999986433311 11 114456789
Q ss_pred EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CCe--EEEEEec
Q 000085 2208 MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TLK--VFHVLKL 2283 (2342)
Q Consensus 2208 LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tgk--~L~tL~l 2283 (2342)
++|+|||++|+++... .++.|.+|++. +++ .+..+.
T Consensus 264 i~~spdg~~l~v~~~~---------------------------------------~~~~i~v~~~~~~~g~~~~~~~~~- 303 (361)
T 3scy_A 264 IHLSPDGKYLYASNRL---------------------------------------KADGVAIFKVDETNGTLTKVGYQL- 303 (361)
T ss_dssp EEECTTSSEEEEEECS---------------------------------------SSCEEEEEEECTTTCCEEEEEEEE-
T ss_pred EEECCCCCEEEEECCC---------------------------------------CCCEEEEEEEcCCCCcEEEeeEec-
Confidence 9999999999766421 03679999985 444 455555
Q ss_pred CCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2284 GEGQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
. ...+.+++|+|||++|++++ .++.|.+|+.+
T Consensus 304 ~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 304 T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2 56788999999999999887 67999997643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-13 Score=162.40 Aligned_cols=245 Identities=9% Similarity=0.050 Sum_probs=176.5
Q ss_pred CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCE-EEEEEcCCcEEEEecCCcccceecccCCCC----
Q 000085 1966 GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEI-ITGGHVDGSIKLLTSDGAKTLETASGHCAP---- 2040 (2342)
Q Consensus 1966 D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGkl-LASGS~DGsIrVWDl~tgkll~tL~GHt~~---- 2040 (2342)
++.+.+|+..++..... +... .. ...++|+|+|++ ++++..++.|.+||..+++.+..+..+...
T Consensus 68 ~~~v~~~d~~~~~~~~~------~~~~-~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 137 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQA------IHND-LK---PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE 137 (353)
T ss_dssp SEEEEEECTTTCCEEEE------EEES-SC---CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS
T ss_pred CccEEEEcCCCCeEEEE------EecC-CC---cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc
Confidence 56899998766322111 1111 11 334899999994 455566899999999999988877665432
Q ss_pred -----eEEEEecCCCCEEEEEe--CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-ccccccC--
Q 000085 2041 -----VTCLALSSDSNFLVTGS--QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRIE-- 2110 (2342)
Q Consensus 2041 -----VtcLAfSPDG~~LaSGS--~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i~-- 2110 (2342)
+.+++|+|+|++++.++ .++.|.+||..++....... .....+..+.++|+|+.+++...++ +..++..
T Consensus 138 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 138 VRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred cCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 78999999999887776 48899999999876554432 2334467889999999887776654 3345442
Q ss_pred CceEEec----CCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEEecCCcEEEEEecCCcE-EEEEeCCCeE
Q 000085 2111 GPIHVLR----GHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVI-MTWNKLQHTL 2184 (2342)
Q Consensus 2111 ~~l~~L~----GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~I-lVwdssdGsI 2184 (2342)
+....+. ++...+.+++|+|++++++.++. ++.|.+||+.+++.+..+.......+++++||+. ++.+..++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v 296 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKV 296 (353)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeE
Confidence 2333333 25667889999999997766654 5999999999999998888766677999999985 4555568999
Q ss_pred EEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2185 SSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2185 ~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
.+|+... ..+.... ....+.+++|+|||++++++..+
T Consensus 297 ~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 297 SVIDAKSYKVVKTFD--TPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEETTTTEEEEEEE--CCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEEECCCCeEEEEEe--cCCCCCeEEEcCCCCEEEEEEcc
Confidence 9999964 4333322 34578999999999988777644
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-14 Score=164.65 Aligned_cols=268 Identities=15% Similarity=0.060 Sum_probs=184.5
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceeccc-
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASG- 2036 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~G- 2036 (2342)
.+++++.++.+++|+..++... ..+..... ...+..++|+|+|+.+ +++..++.|.+||+.+++.+..+..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVD------KVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEE------EEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEcCCCCeEEEEECCCCcEE------EEEEcCCC-CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 4677778889999997653211 11111110 0013458999999854 5666788999999999988776653
Q ss_pred C----CCCeEEEEecCCCCEEEEEe------------CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeec
Q 000085 2037 H----CAPVTCLALSSDSNFLVTGS------------QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANAS 2100 (2342)
Q Consensus 2037 H----t~~VtcLAfSPDG~~LaSGS------------~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s 2100 (2342)
+ ...+.+++|+|+|++|++++ .++.|.+||+.++....... ....+..+.++|+|+.+++.
T Consensus 76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE-
T ss_pred CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe-
Confidence 2 23678899999999999886 67999999998876544432 23456778899999988777
Q ss_pred CCCccccccC--CceEEecCCCCCeEEEEEecCCCEEEEEeCC-C-----------------------cEEEEECCCCeE
Q 000085 2101 ADKSRRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCSDS-S-----------------------DLLLHSIRRGRL 2154 (2342)
Q Consensus 2101 ~D~s~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D-G-----------------------tIrIWDLrTGkl 2154 (2342)
.+.+..|+.. +....+..+.. ...+.|+|++..++.++.+ + .|.+||+.+++.
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 3344555543 23334443321 1123688988866554433 2 468999999987
Q ss_pred EEEE--ecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2155 IRRL--VGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2155 IrsL--~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
. .+ ..+ ....++++|||+.++.. ++.+.+|++.... +.... ....+.+++|+|||+++++++.
T Consensus 232 ~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~------- 299 (337)
T 1pby_B 232 A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGA------- 299 (337)
T ss_dssp E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESB-------
T ss_pred e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcC-------
Confidence 5 32 222 35679999999987766 6899999987543 33322 3456889999999999987631
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
++.|.+||+.+++.+..+..
T Consensus 300 ----------------------------------~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 300 ----------------------------------LGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ----------------------------------SSEEEEEETTTCCEEEEEEC
T ss_pred ----------------------------------CCcEEEEECcCCcEEEEEEc
Confidence 57899999999999888873
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=190.04 Aligned_cols=315 Identities=7% Similarity=-0.092 Sum_probs=196.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEc---------CCcEEEEec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHV---------DGSIKLLTS 2025 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~---------DGsIrVWDl 2025 (2342)
++|..+++ +.|+.+++|+..++... ..+..+......+.+++|||||++|++++. |+.|++||+
T Consensus 25 ~dg~~~~~-~~d~~i~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 25 SGQEYLHQ-SADNNIVLYNIETGQSY------TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp SSSEEEEE-CTTSCEEEEESSSCCEE------EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCCeEEEE-cCCCCEEEEEcCCCcEE------EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 45544444 45789999997663211 111111110012456999999999998876 789999999
Q ss_pred CCcccc--eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC-----------------CCCcc
Q 000085 2026 DGAKTL--ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS-----------------SGMGT 2086 (2342)
Q Consensus 2026 ~tgkll--~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~-----------------~~V~s 2086 (2342)
.+++.+ ..+ ...|.+++|||||+.|++++ |++|++|++.++........++. .....
T Consensus 98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 998763 222 25689999999999999986 78999999988754332211111 12257
Q ss_pred ccccCCCCCceeecCCC-----------------------------------ccccccCCce----------EEecCCCC
Q 000085 2087 PGNSIGSSTPANASADK-----------------------------------SRRRRIEGPI----------HVLRGHHR 2121 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~-----------------------------------s~~~~i~~~l----------~~L~GHs~ 2121 (2342)
+.|+|||+.++....+. +..|+..... ..+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 89999999998776441 1223332211 12346888
Q ss_pred CeEEEEEecCCCEEEEEeCC----CcEEEEE----CCCCeEEEEE----ecCC--cE-----EEEEecCCcEEEE--EeC
Q 000085 2122 EILCCCVSSDLGVVVSCSDS----SDLLLHS----IRRGRLIRRL----VGVD--AH-----AVSLSSEGVIMTW--NKL 2180 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~D----GtIrIWD----LrTGklIrsL----~gh~--vs-----sLSfSpDG~IlVw--dss 2180 (2342)
.+.+++|+||++++++.... ..|.+|| +.++++...+ .++. +. .++|+|||+.+++ ...
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 89999999998777775433 2488899 8887765444 2333 33 6789999985544 344
Q ss_pred CC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCC
Q 000085 2181 QH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNN 2258 (2342)
Q Consensus 2181 dG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~ 2258 (2342)
++ .|.+|++.+..... ...+...+..+.++ +|+.++..+.++.
T Consensus 334 ~g~~~l~~~~~~~~~~~~-lt~~~~~v~~~~~~-d~~~i~~~~~~~~--------------------------------- 378 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQ-ITSGKWEAINIFRV-TQDSLFYSSNEFE--------------------------------- 378 (719)
T ss_dssp TSCEEEEEESSCSTTCEE-CSCSSSCEEEEEEE-CSSEEEEEESCGG---------------------------------
T ss_pred CCceEEEEEECCCCceEe-cccCceEEEEEEEE-eCCEEEEEEecCC---------------------------------
Confidence 55 45556665543322 22355668888888 8888876653200
Q ss_pred CccCCCCeEEEEECC--CCeE-EEEEec---CCCCCeEEEEEecCCCEEEE-EeCC--CcEEEEeCCCC
Q 000085 2259 RFDFPSPSICFLDLH--TLKV-FHVLKL---GEGQDITALALNKDNTNLLV-STAD--KQLIVFTDPAL 2318 (2342)
Q Consensus 2259 ~ias~DGsIrIWDL~--Tgk~-L~tL~l---gHs~~ItsLafSPDG~~LaS-GSsD--GsIrVWDi~sL 2318 (2342)
..++.+.+|.+. ++.. ...+.. +|...+..+.|+||+++++. ++.+ ..+.+|+..+.
T Consensus 379 ---~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 379 ---EYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp ---GCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred ---CCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 002445555543 3321 222221 25567889999999987774 3333 46788886443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-12 Score=154.42 Aligned_cols=253 Identities=13% Similarity=0.095 Sum_probs=189.0
Q ss_pred ceeEEEEEcCCCCEEEEEEcC------------------------CcEEEEecCCcccceecc-cCCCCeEEEEecCCCC
Q 000085 1997 RSSAVVSITHDKEIITGGHVD------------------------GSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSN 2051 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~D------------------------GsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~ 2051 (2342)
..+..++++++|++++++..+ +.|.+||..+++.+..+. ++-.....++++++|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 446679999999999988877 479999999888876654 4556789999999999
Q ss_pred EEEEEeCCCceEEEeccCCc-cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec
Q 000085 2052 FLVTGSQDTTILLWRIHRAF-TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS 2130 (2342)
Q Consensus 2052 ~LaSGS~DGTVrVWDl~tg~-~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP 2130 (2342)
++++.+.++.|++||..... ....+ +.. . ....-.++-.....++|+|
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~----------------------~~~-~--------~~g~~~~~~~~P~~ia~~~ 152 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLIL----------------------GRS-M--------QPGSDQNHFCQPTDVAVEP 152 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEE----------------------SBT-T--------BCCCSTTCCSSEEEEEECT
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEe----------------------ccc-C--------CCCCCccccCCCcEEEEeC
Confidence 99999999999999976531 11110 000 0 0000023455788999999
Q ss_pred -CCCEEEEEe-CCCcEEEEECCCCeEEEEEecC------------CcEEEEEecC-CcEEEEEeCCCeEEEEEeC-Ccee
Q 000085 2131 -DLGVVVSCS-DSSDLLLHSIRRGRLIRRLVGV------------DAHAVSLSSE-GVIMTWNKLQHTLSSFTLN-GVLV 2194 (2342)
Q Consensus 2131 -Dg~lLaSGS-~DGtIrIWDLrTGklIrsL~gh------------~vssLSfSpD-G~IlVwdssdGsI~I~dln-G~~L 2194 (2342)
++.++++.+ .++.|++|| .+|..+..+... ....++++++ |.+++.+..++.|.+|+.. |..+
T Consensus 153 ~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 153 STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV 231 (329)
T ss_dssp TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 788888886 699999999 678888777421 2678999998 8999999999999999998 7766
Q ss_pred eeecCC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2195 ARAKLP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2195 ~s~~~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
...... +...+.+++++| |..+++.+ .. + .....+..|++||..
T Consensus 232 ~~~~~~~~~~~~~~~~~~p-g~~~~~~g---~~--------~-----------------------v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 232 REIKHASFGRNVFAISYIP-GFLFAVNG---KP--------Y-----------------------FGDQEPVQGFVMNFS 276 (329)
T ss_dssp EEECCTTTTTCEEEEEEET-TEEEEEEC---CC--------C-----------------------TTCSCCCCEEEEETT
T ss_pred EEEeccccCCCcceeeecC-CEEEEeCC---CE--------E-----------------------eccCCCcEEEEEEcC
Confidence 655433 667899999999 54444332 10 0 001125689999999
Q ss_pred CCeEEEEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2274 TLKVFHVLK--LGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2274 Tgk~L~tL~--lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++.+..+. .++...+.+|+++|+|..+++...++.|++|+..
T Consensus 277 ~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 277 SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 999998874 2566779999999999878888899999999954
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-13 Score=164.26 Aligned_cols=245 Identities=9% Similarity=0.054 Sum_probs=168.2
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecC-CcccceecccC-CCCeEEEEecCCCCE--EEEEe-------------CCCc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSD-GAKTLETASGH-CAPVTCLALSSDSNF--LVTGS-------------QDTT 2061 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~-tgkll~tL~GH-t~~VtcLAfSPDG~~--LaSGS-------------~DGT 2061 (2342)
+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|||++ +++++ .+++
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~ 120 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence 4469999999999988888 99999997 77665432211 133667999999994 55553 6899
Q ss_pred eEEEeccC-CccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe-cCCCCCeEEEEEecCCCEEEEEe
Q 000085 2062 ILLWRIHR-AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL-RGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2062 VrVWDl~t-g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L-~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
+.+|++.. +.... .+..+ ..+...+.+++|+|||+++++++
T Consensus 121 v~v~~~~~~g~~~~-------------------------------------~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 121 GNVFSVSETGKLEK-------------------------------------NVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp EEEEEECTTCCEEE-------------------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred EEEEccCCCCcCcc-------------------------------------eEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 99999874 21100 00111 12456789999999999888766
Q ss_pred -CCCcEEEEECC-CCeEE--EEEe----cCCcEEEEEecCCcEEEEEe-CCCeEEEEEeC---Cceee---ee-cCC---
Q 000085 2140 -DSSDLLLHSIR-RGRLI--RRLV----GVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLN---GVLVA---RA-KLP--- 2200 (2342)
Q Consensus 2140 -~DGtIrIWDLr-TGklI--rsL~----gh~vssLSfSpDG~IlVwds-sdGsI~I~dln---G~~L~---s~-~~~--- 2200 (2342)
.++.|++||+. +|+.. ..+. +.....++|+|||+.++... .++.+.+|+++ |.... .. ..+
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 46899999998 77653 3443 23478899999998765544 46889999875 43211 11 111
Q ss_pred --CCC------CeEEEE-EccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2201 --LSG------SIGCME-ISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2201 --Hs~------~ItsLa-fSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
|.. .+.+++ |+|||++|+++...... ...+.|.+|+
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~-----------------------------------~~~~~i~v~~ 288 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-----------------------------------ELQGYIAGFK 288 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-----------------------------------TSCCEEEEEE
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCC-----------------------------------CCCCeEEEEE
Confidence 122 588999 99999999876421100 0135899999
Q ss_pred CC-CCeEEEE---EecCCCCCeEEEEEec---CCCEEEEEeCC-CcEEEEeCCC
Q 000085 2272 LH-TLKVFHV---LKLGEGQDITALALNK---DNTNLLVSTAD-KQLIVFTDPA 2317 (2342)
Q Consensus 2272 L~-Tgk~L~t---L~lgHs~~ItsLafSP---DG~~LaSGSsD-GsIrVWDi~s 2317 (2342)
+. +++.... .. .+...+..++|+| ||++|++++.+ +.|.+|+...
T Consensus 289 ~~~~g~~~~~~~~~~-~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 289 LRDCGSIEKQLFLSP-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTSCEEEEEEEEE-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ECCCCCEEEeeeeee-cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 86 6765432 32 3455678899999 89999999864 8999998643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=174.54 Aligned_cols=184 Identities=6% Similarity=-0.046 Sum_probs=136.9
Q ss_pred eeEEEEEcCCCCEEE----EEEcCCcEEEEecCCc--------cc---ceecccCCCCeEEEEecCC-CCEEEEEeCCCc
Q 000085 1998 SSAVVSITHDKEIIT----GGHVDGSIKLLTSDGA--------KT---LETASGHCAPVTCLALSSD-SNFLVTGSQDTT 2061 (2342)
Q Consensus 1998 Svt~VafSpDGklLA----SGS~DGsIrVWDl~tg--------kl---l~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGT 2061 (2342)
.+.+++|+|+|++|+ +|+.|++|+|||+.++ +. +..+.+|.+.|++++|+|+ +.+|++|+.||+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 467899999999999 7889999999998765 21 4567789999999999998 899999999999
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
|++||+.++. ......+|...|++++|+|+|++|++|+.|
T Consensus 174 v~iwD~~~~~----------------------------------------~~~~~~~~~~~v~~v~wspdg~~lasgs~d 213 (434)
T 2oit_A 174 IAVLQVTETV----------------------------------------KVCATLPSTVAVTSVCWSPKGKQLAVGKQN 213 (434)
T ss_dssp EEEEEESSSE----------------------------------------EEEEEECGGGCEEEEEECTTSSCEEEEETT
T ss_pred EEEEEcCCCc----------------------------------------ceeeccCCCCceeEEEEcCCCCEEEEEcCC
Confidence 9999998742 122345688899999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecC---------CcEEEEEecCCcEEEEE-eCCC------eEEEEEeCCce----ee-eecC-
Q 000085 2142 SDLLLHSIRRGRLIRRLVGV---------DAHAVSLSSEGVIMTWN-KLQH------TLSSFTLNGVL----VA-RAKL- 2199 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh---------~vssLSfSpDG~IlVwd-ssdG------sI~I~dlnG~~----L~-s~~~- 2199 (2342)
|+|++||++ ++....+..+ .+..++|++++.+++.. ..+| .+++|++.... .. ....
T Consensus 214 g~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~ 292 (434)
T 2oit_A 214 GTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFME 292 (434)
T ss_dssp SCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCC
T ss_pred CcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEeccc
Confidence 999999998 6666666432 35778899988776543 3332 37888886321 10 1000
Q ss_pred ------CCCCCeEEEEEccCCCEEEEEeC
Q 000085 2200 ------PLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2200 ------~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
....+-..+.+-++.+++++++.
T Consensus 293 ~~~~~~~~r~~~~~~~~l~dw~l~~v~s~ 321 (434)
T 2oit_A 293 PCYGSCTERQHHYYLSYIEEWDLVLAASA 321 (434)
T ss_dssp SSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred CCCCCCCCcCcceeeehhccCCEEEEecC
Confidence 11222233444478888887763
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.7e-13 Score=161.86 Aligned_cols=271 Identities=10% Similarity=0.026 Sum_probs=175.3
Q ss_pred EEEcCCCCEEEEEEc-CCc--EEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2002 VSITHDKEIITGGHV-DGS--IKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSpDGklLASGS~-DGs--IrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
.+|+|||+.|+.++. ++. |.+||+.+++..+...+|...+.+++|+|||+.|+.++.++.|.+||+.++....
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---- 116 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---- 116 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE----
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee----
Confidence 578999998888887 663 8888999998888777787777778999999999999999999999998853221
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEE--EEecCCCEEEE-------------------
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCC--CVSSDLGVVVS------------------- 2137 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~V--afSPDg~lLaS------------------- 2137 (2342)
.+..+...+... .+++++..++.
T Consensus 117 ------------------------------------~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 117 ------------------------------------VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp ------------------------------------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ------------------------------------eeechhhcccccceeECCCCCeeccccccCcccccccccchhhh
Confidence 112222223222 23666666653
Q ss_pred ---EeCCCcEEEEECCCCeEEEEEecC-CcEEEEEec-CCcEEEEEeCC------CeEEEEEeCCceeeeecCCCC-CCe
Q 000085 2138 ---CSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSS-EGVIMTWNKLQ------HTLSSFTLNGVLVARAKLPLS-GSI 2205 (2342)
Q Consensus 2138 ---GS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSp-DG~IlVwdssd------GsI~I~dlnG~~L~s~~~~Hs-~~I 2205 (2342)
.+.++.|++||+.+++........ .+..++|+| ||+.+++.... ..+.+++..+.........+. ..+
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC 240 (388)
T ss_dssp HGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred hhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence 234578999999999765554433 367889999 99988877643 367777776654443322222 358
Q ss_pred EEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC----------------CccccccccccccCCCC-----ccCCC
Q 000085 2206 GCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS----------------GTEDFDLASDQSVDNNR-----FDFPS 2264 (2342)
Q Consensus 2206 tsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~----------------~~iaFspd~~~s~ss~~-----ias~D 2264 (2342)
..+.|+|||+.|+..+...... .....+|++..... ....|++++........ ....+
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~-~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 319 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSP-DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND 319 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCC-CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred ccceECCCCCEEEEEecCCCCC-cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence 8899999999886655322210 00022344333221 11134444332211100 01246
Q ss_pred CeEEEEECCCCeEEEEEecCCCC-----------CeEEEEEecCCCEEEEEe-CCCcEEEEeC
Q 000085 2265 PSICFLDLHTLKVFHVLKLGEGQ-----------DITALALNKDNTNLLVST-ADKQLIVFTD 2315 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL~lgHs~-----------~ItsLafSPDG~~LaSGS-sDGsIrVWDi 2315 (2342)
..|++||+.+++.. .+. .|.. .+.+++|+|||++|+..+ .+|...||..
T Consensus 320 ~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 320 PFLYVFNMKNGTQH-RVA-RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CEEEEEETTTTEEE-EEE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CEEEEEeccCCceE-Eec-cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 78999999998764 444 3444 578899999999888665 5777777763
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=177.73 Aligned_cols=233 Identities=13% Similarity=0.019 Sum_probs=166.3
Q ss_pred CCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC---CC-ccc--ccc
Q 000085 2037 HCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA---DK-SRR--RRI 2109 (2342)
Q Consensus 2037 Ht~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~---D~-s~~--~~i 2109 (2342)
+..+|.+++|+|||++|++++. ||+++||++.++.. ......+...+..+.|+|| +.+++... +. ... ++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3568999999999999999887 99999999866543 2222333356788899999 65554443 11 122 222
Q ss_pred --CCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC----C
Q 000085 2110 --EGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ----H 2182 (2342)
Q Consensus 2110 --~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd----G 2182 (2342)
......+..+ ..+...+|+|+++. +++.+.++.+.+||+.+++..+....+. ..+++||||+.+++...+ .
T Consensus 98 ~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 98 SRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TSTTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEE
T ss_pred cCCCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCe
Confidence 2222233332 23456788888753 3334444455599999998766655444 889999999999977655 6
Q ss_pred eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2183 TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2183 sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
.|++|++.+..... ...|.+.+.+++|||||++|+++..++
T Consensus 176 ~i~~~d~~~g~~~~-l~~~~~~~~~~~~SpDG~~l~~~~~~~-------------------------------------- 216 (582)
T 3o4h_A 176 SLFTSNLSSGGLRV-FDSGEGSFSSASISPGMKVTAGLETAR-------------------------------------- 216 (582)
T ss_dssp EEEEEETTTCCCEE-ECCSSCEEEEEEECTTSCEEEEEECSS--------------------------------------
T ss_pred EEEEEcCCCCCceE-eecCCCccccceECCCCCEEEEccCCC--------------------------------------
Confidence 78889887554443 345788899999999999999553211
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEE--------EecCCCEEEEEeCCCcEEEEeC
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALA--------LNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLa--------fSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
...|++||+.+++.. .+. +|...+..++ |+|||..+++++.||.+++|++
T Consensus 217 -~~~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 217 -EARLVTVDPRDGSVE-DLE-LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp -CEEEEEECTTTCCEE-ECC-CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred -eeEEEEEcCCCCcEE-Ecc-CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 127999999999877 555 7777777777 9999988899999999999997
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-14 Score=187.96 Aligned_cols=237 Identities=8% Similarity=0.025 Sum_probs=163.9
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCe-----EEEEecCCCCEEEEEeCC---------CceEEEe
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPV-----TCLALSSDSNFLVTGSQD---------TTILLWR 2066 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~V-----tcLAfSPDG~~LaSGS~D---------GTVrVWD 2066 (2342)
.+.|+|||++++++ |++|++||+.++++...+.+|...+ ..++|||||++|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 48999999999987 9999999999999888888876432 347889999999999887 4456999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
+.++... .+..|...+..++|||||+.|+.++ |+.|++
T Consensus 99 ~~~~~~~-----------------------------------------~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~ 136 (740)
T 4a5s_A 99 LNKRQLI-----------------------------------------TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYV 136 (740)
T ss_dssp TTTTEEC-----------------------------------------CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEE
T ss_pred CCCCcEE-----------------------------------------EcccCCCcceeeEECCCCCEEEEEE-CCeEEE
Confidence 9885321 1344566788888899988888774 678888
Q ss_pred EECCCCeEEEEEe-cCC-------------------cEEEEEecCCcEEEEEeCC-------------------------
Q 000085 2147 HSIRRGRLIRRLV-GVD-------------------AHAVSLSSEGVIMTWNKLQ------------------------- 2181 (2342)
Q Consensus 2147 WDLrTGklIrsL~-gh~-------------------vssLSfSpDG~IlVwdssd------------------------- 2181 (2342)
||+.++...+... ++. ...+.|||||+.+++...+
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 8888776544211 111 1237888888877665311
Q ss_pred -----------CeEEEEEeCC---c---eeeeecC-----CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2182 -----------HTLSSFTLNG---V---LVARAKL-----PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2182 -----------GsI~I~dlnG---~---~L~s~~~-----~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
..+++|++.+ . ....... .|...+..++|+|||+.++.......
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~-------------- 282 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ-------------- 282 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST--------------
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC--------------
Confidence 1467777766 4 2222222 26778999999999997775542111
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCCe----EEE--EE-ecCCCCCeE-----EEEEecCCCEEE-EEeC
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK----VFH--VL-KLGEGQDIT-----ALALNKDNTNLL-VSTA 2306 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk----~L~--tL-~lgHs~~It-----sLafSPDG~~La-SGSs 2306 (2342)
.+..|.+||+.+++ +.. .+ ..+|...|. .+.|+|||+.|+ ..+.
T Consensus 283 -----------------------~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~ 339 (740)
T 4a5s_A 283 -----------------------NYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN 339 (740)
T ss_dssp -----------------------TEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred -----------------------CEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc
Confidence 14579999998886 221 11 124555554 789999999887 6653
Q ss_pred -CC--cEEEEeCCCC
Q 000085 2307 -DK--QLIVFTDPAL 2318 (2342)
Q Consensus 2307 -DG--sIrVWDi~sL 2318 (2342)
+| .|++|+..+.
T Consensus 340 ~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 340 EEGYRHICYFQIDKK 354 (740)
T ss_dssp TTSCEEEEEEETTCS
T ss_pred CCCceEEEEEECCCC
Confidence 44 6888886654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-11 Score=145.07 Aligned_cols=235 Identities=11% Similarity=0.144 Sum_probs=174.2
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc------cCCCCeEEEEe-cCCCCEEEEEeC-CCceEEEecc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS------GHCAPVTCLAL-SSDSNFLVTGSQ-DTTILLWRIH 2068 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~------GHt~~VtcLAf-SPDG~~LaSGS~-DGTVrVWDl~ 2068 (2342)
.....++++++|+++++...++.|++||.+ ++.+..+. +|...+.++++ .++++++++... ++.|.+||.
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~- 107 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 107 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence 345669999999999998889999999987 55555443 35567899999 577777777644 889999994
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL-RGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L-~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
++.... .+ ..+...+.+++++++++++++...++.|.+|
T Consensus 108 ~g~~~~----------------------------------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 108 YGQFVR----------------------------------------KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIF 147 (286)
T ss_dssp TSCEEE----------------------------------------EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCcEEE----------------------------------------EecCccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 322111 11 1234567899999999988888888999999
Q ss_pred ECCCCeEEEEEec----CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-CCCCeEEEEEccCCCEEEEEeC
Q 000085 2148 SIRRGRLIRRLVG----VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-LSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2148 DLrTGklIrsL~g----h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|. +++.+..+.. .....++++++|.+++.+..++.|.+|+.++..+...... +...+.+++++++|+++++...
T Consensus 148 ~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 148 DQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNH 226 (286)
T ss_dssp CT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred cC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC
Confidence 96 5667766642 2368899999999888888889999999988765543321 3367899999999988876631
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC-eEEEEECCCCeEEEEEecCC-CCCeEEEEEecCCCE
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP-SICFLDLHTLKVFHVLKLGE-GQDITALALNKDNTN 2300 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG-sIrIWDL~Tgk~L~tL~lgH-s~~ItsLafSPDG~~ 2300 (2342)
++ .|.+||. +++.+..+.... ...+.+++++|+|+.
T Consensus 227 -----------------------------------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 227 -----------------------------------------NNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 264 (286)
T ss_dssp -----------------------------------------SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred -----------------------------------------CCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcE
Confidence 33 7999995 566666665221 234789999999986
Q ss_pred EEEEeCCCcEEEEeCCC
Q 000085 2301 LLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2301 LaSGSsDGsIrVWDi~s 2317 (2342)
+++ +.|+.|++|+...
T Consensus 265 ~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 265 VLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEE-ETTTEEEEEECSC
T ss_pred EEE-CCCCeEEEEEccc
Confidence 666 6799999999543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-12 Score=153.04 Aligned_cols=220 Identities=16% Similarity=0.144 Sum_probs=152.1
Q ss_pred CCcEEEEecC--Ccccce-ecccCCCCeEEEEecCCCCEEEEEeC---CCceEEEeccCCccccccccCCCCCCcccccc
Q 000085 2017 DGSIKLLTSD--GAKTLE-TASGHCAPVTCLALSSDSNFLVTGSQ---DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNS 2090 (2342)
Q Consensus 2017 DGsIrVWDl~--tgkll~-tL~GHt~~VtcLAfSPDG~~LaSGS~---DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~S 2090 (2342)
++.|++|+++ +++... ....+...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------------------ 75 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------------------ 75 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE------------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE------------------
Confidence 4567777765 454432 2344667788999999999 655554 68999999966421
Q ss_pred CCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC-CC--eEEEEEecC-----
Q 000085 2091 IGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIR-RG--RLIRRLVGV----- 2161 (2342)
Q Consensus 2091 pDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLr-TG--klIrsL~gh----- 2161 (2342)
..+..+..|...+..++|+|+++++++++ .+++|.+||+. ++ ..+..+...
T Consensus 76 --------------------~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~ 135 (347)
T 3hfq_A 76 --------------------HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPR 135 (347)
T ss_dssp --------------------EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSS
T ss_pred --------------------EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCC
Confidence 11223344667788999999999888887 78999999996 33 333444321
Q ss_pred ------CcEEEEEecCCcEEEEEeCCCeEEEEEeC-Cceee---eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2162 ------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVA---RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2162 ------~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~---s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
.+..++++|||++++.+..++.+.+|++. ...+. .........+..++|+|||+++++++.
T Consensus 136 ~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--------- 206 (347)
T 3hfq_A 136 PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--------- 206 (347)
T ss_dssp TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET---------
T ss_pred ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC---------
Confidence 25679999999977777778899999997 32222 112223346888999999998876641
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC--CeE--EEEEecCCC------CCeEEEEEecCCCEE
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT--LKV--FHVLKLGEG------QDITALALNKDNTNL 2301 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T--gk~--L~tL~lgHs------~~ItsLafSPDG~~L 2301 (2342)
.++.|.+|++.. ++. +..+. ... ..+..++|+|||++|
T Consensus 207 -------------------------------~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 207 -------------------------------LSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp -------------------------------TTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEE
T ss_pred -------------------------------CCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEE
Confidence 146788888763 543 22333 121 358899999999988
Q ss_pred E-EEeCCCcEEEEeCC
Q 000085 2302 L-VSTADKQLIVFTDP 2316 (2342)
Q Consensus 2302 a-SGSsDGsIrVWDi~ 2316 (2342)
+ ++..++.|.+|+..
T Consensus 255 ~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 255 YVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEEETTTEEEEEEEC
T ss_pred EEEeCCCCEEEEEEEC
Confidence 5 55678999999965
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=152.39 Aligned_cols=274 Identities=11% Similarity=0.048 Sum_probs=171.8
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCccccee
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~t 2033 (2342)
+++..+++++.++.|++|+..++... ..+.... ......++|+|+|+++ +++..++.|.+||+.+++.+..
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~------~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVY------KSCVMPD--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEE------EEEECSS--CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEE------EEEecCC--CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 34566778888899999997653211 1111111 0123458999999855 5556789999999999888776
Q ss_pred cccCC------CCeEEEEecCCCCEEEEEeCC------------CceEEEeccCCcccccc-ccCCCCCCccccccCCCC
Q 000085 2034 ASGHC------APVTCLALSSDSNFLVTGSQD------------TTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2034 L~GHt------~~VtcLAfSPDG~~LaSGS~D------------GTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~ 2094 (2342)
+..+. ..+.+++|+|||++|++++.+ ++|.+||+.++...... .......+.+++++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 65332 337899999999999998866 99999999885433322 222344577788999999
Q ss_pred CceeecCCCccccccC--CceEEecCCC-C-----------------------CeEEEEEecCCCEEEEEeCC-CcEEEE
Q 000085 2095 TPANASADKSRRRRIE--GPIHVLRGHH-R-----------------------EILCCCVSSDLGVVVSCSDS-SDLLLH 2147 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~--~~l~~L~GHs-~-----------------------~Vt~VafSPDg~lLaSGS~D-GtIrIW 2147 (2342)
+.+...+ +..++.. +....+..+. . ...++++++++......... ..+..+
T Consensus 161 -l~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 -LYVAGPD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp -EEEESSS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred -EEEccCc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 5444333 4445442 2333333221 0 23456666544211100001 112224
Q ss_pred ECCCCeEEE-EE--ecCCcEEEEEec-CCcEEEEEeCCCeEEEEEeCCcee-eeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2148 SIRRGRLIR-RL--VGVDAHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLV-ARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2148 DLrTGklIr-sL--~gh~vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L-~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|..+++... .+ .+.....++++| ||+.++.. ++.+.+|++..... .... ....+.+++|+|+|++|++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~ 314 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGT 314 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESB
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc--CCCCccceEECCCCCEEEEecC
Confidence 444443211 11 123467889999 99987776 78999999875433 3332 3346789999999998887531
Q ss_pred CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2223 SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
++.|.+||+.+++.+..+..
T Consensus 315 -----------------------------------------~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 315 -----------------------------------------FNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp -----------------------------------------SSEEEEEETTTTEEEEEEEC
T ss_pred -----------------------------------------CCeEEEEeccccceeeeeec
Confidence 57899999999999988873
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-12 Score=172.38 Aligned_cols=315 Identities=9% Similarity=-0.035 Sum_probs=196.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCccee--EEEEEcCCCCEEEEEEcC---------CcEEEE
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSS--AVVSITHDKEIITGGHVD---------GSIKLL 2023 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Sv--t~VafSpDGklLASGS~D---------GsIrVW 2023 (2342)
++|+.++++ |+.|++|+..++... ..+..+......+ ..++|||||++|+.++.+ +.+.+|
T Consensus 26 ~dg~~~~~~--~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 26 SDHEYLYKQ--ENNILVFNAEYGNSS------VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp SSSEEEEEE--TTEEEEEETTTCCEE------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCcEEEEc--CCcEEEEECCCCceE------EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 456666665 789999997764321 1122222222222 237899999999998876 567799
Q ss_pred ecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC-----------------CCCcc
Q 000085 2024 TSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS-----------------SGMGT 2086 (2342)
Q Consensus 2024 Dl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~-----------------~~V~s 2086 (2342)
|+.+++.. .+..|.+.+..++|||||+.|+.++ |+.|.+|++.++........+.. .....
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 99998755 4677888999999999999999885 78999999988654322111111 22235
Q ss_pred ccccCCCCCceeecCCCc-------------------------------------cccccCC-------ceEEec-----
Q 000085 2087 PGNSIGSSTPANASADKS-------------------------------------RRRRIEG-------PIHVLR----- 2117 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~s-------------------------------------~~~~i~~-------~l~~L~----- 2117 (2342)
+.|||||+.++....+.. ..|++.. ....+.
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 789999999877643321 1122222 222333
Q ss_pred -CCCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCe----EE--EEE--ecCC-------cEEEEEecCCcEEE-
Q 000085 2118 -GHHREILCCCVSSDLGVVVSCSD----SSDLLLHSIRRGR----LI--RRL--VGVD-------AHAVSLSSEGVIMT- 2176 (2342)
Q Consensus 2118 -GHs~~Vt~VafSPDg~lLaSGS~----DGtIrIWDLrTGk----lI--rsL--~gh~-------vssLSfSpDG~IlV- 2176 (2342)
+|...+..++|+|||+.++.... +..|.+||+.+|+ +. ..+ ..+. ....+|+|||+.++
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~ 335 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEE
Confidence 37778999999999997665432 3479999999987 32 122 2232 23678999999776
Q ss_pred EEe-CCC--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCC--CCCCCCCcccccccCCCCCCcccccccc
Q 000085 2177 WNK-LQH--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNS--SSTNNGSYDNIQGLNSKQSGTEDFDLAS 2251 (2342)
Q Consensus 2177 wds-sdG--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D--Gs~d~~i~d~Lw~l~~~~~~~iaFspd~ 2251 (2342)
|.. .+| .|++|+..+........ ....|..+.. +|++.++..+.. ..
T Consensus 336 ~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~~i~f~~~~~~~~-------------------------- 387 (740)
T 4a5s_A 336 IISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSDYLYYISNEYKGM-------------------------- 387 (740)
T ss_dssp EEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSSEEEEEESCGGGC--------------------------
T ss_pred EEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCCEEEEEEecCCCC--------------------------
Confidence 554 344 57777777655443332 3445555432 446666644321 00
Q ss_pred ccccCCCCccCCCCeEEEEECCCCeEEEEEec---CCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCC
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL---GEGQDITALALNKDNTNLLVSTAD---KQLIVFTDPA 2317 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l---gHs~~ItsLafSPDG~~LaSGSsD---GsIrVWDi~s 2317 (2342)
.....|+..++..++....+.. +....+..+.|||++++++..... ..+.+++...
T Consensus 388 ----------~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~ 449 (740)
T 4a5s_A 388 ----------PGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN 449 (740)
T ss_dssp ----------TTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred ----------CceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCC
Confidence 0134566666665543323331 123578899999999987755433 3567777543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-11 Score=146.63 Aligned_cols=268 Identities=14% Similarity=0.102 Sum_probs=162.9
Q ss_pred ecCCCeEEecCCC----ceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEE-cCCcEEEEecCCc
Q 000085 1954 FQHGKASASPASG----TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGH-VDGSIKLLTSDGA 2028 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD----~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS-~DGsIrVWDl~tg 2028 (2342)
-++|+.+++++.+ +.+++|+...... .. ..+............+++ ++++|++++ .++.|.+|++...
T Consensus 58 spdg~~l~~~~~~~~~~~~v~~~~~~~~~g--~~---~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~ 130 (361)
T 3scy_A 58 SADGKFVYSVNEFSKDQAAVSAFAFDKEKG--TL---HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQD 130 (361)
T ss_dssp CTTSSEEEEEECCSSTTCEEEEEEEETTTT--EE---EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT
T ss_pred CCCCCEEEEEEccCCCCCcEEEEEEeCCCC--cE---EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC
Confidence 4667777777664 6899887433101 11 111111111123344666 888666655 6889999999754
Q ss_pred ccceec------c--------cCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2029 KTLETA------S--------GHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2029 kll~tL------~--------GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
..+..+ . .+...+.+++|+|||++|+.++ .+++|.+|++.........
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~----------------- 193 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK----------------- 193 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC-----------------
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc-----------------
Confidence 333211 1 1233468899999999776555 5899999998763210000
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeE--EEEEecC-----CcEE
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRL--IRRLVGV-----DAHA 2165 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGkl--IrsL~gh-----~vss 2165 (2342)
..+... .........+...+.+++|+|+|+++++++ .++.|.+||+.++.. +..+... ....
T Consensus 194 ~~l~~~----------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 263 (361)
T 3scy_A 194 EKFLTK----------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGD 263 (361)
T ss_dssp CCCEEE----------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred cceeec----------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence 000000 000011122345678999999999887766 689999999998765 3333322 2468
Q ss_pred EEEecCCcEEEEEeC--CCeEEEEEeC---CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC
Q 000085 2166 VSLSSEGVIMTWNKL--QHTLSSFTLN---GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240 (2342)
Q Consensus 2166 LSfSpDG~IlVwdss--dGsI~I~dln---G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~ 2240 (2342)
++|+|||+.++.... ++.+.+|+++ |.............+.+++|+|||++|++++.
T Consensus 264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~------------------ 325 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR------------------ 325 (361)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET------------------
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC------------------
Confidence 999999997755544 4889999985 33211111112457889999999999998852
Q ss_pred CCCccccccccccccCCCCccCCCCeEEEE--ECCCCeEEEEEecCCCCCeEEEEEe
Q 000085 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFL--DLHTLKVFHVLKLGEGQDITALALN 2295 (2342)
Q Consensus 2241 ~~~~iaFspd~~~s~ss~~ias~DGsIrIW--DL~Tgk~L~tL~lgHs~~ItsLafS 2295 (2342)
.++.|.+| |..+++........+...+.|+.|.
T Consensus 326 ----------------------~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 326 ----------------------DTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ----------------------TTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ----------------------CCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 14567884 5567776544322344578888886
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=8.5e-12 Score=153.50 Aligned_cols=272 Identities=10% Similarity=0.096 Sum_probs=178.0
Q ss_pred cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccCCccccccccC-----C
Q 000085 2016 VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHRAFTSRTGTIE-----P 2080 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~tg~~i~t~~~~-----~ 2080 (2342)
.|+.|.+||..+++.+.++..+..+ .++|+|||+++++++ .+++|.+||..+.+...+.... .
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999988888877666 899999999999886 3678999999887655544211 2
Q ss_pred CCCCccccccCCCCCceeecC---CCccccccCC--ceEE-ecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCC-C
Q 000085 2081 SSGMGTPGNSIGSSTPANASA---DKSRRRRIEG--PIHV-LRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRR-G 2152 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~---D~s~~~~i~~--~l~~-L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrT-G 2152 (2342)
......++++|||+++.+... +.+..++... .+.. +. +. ....+.+.|++ ..+++.+.||.+.+|++.. +
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 245677899999998876653 2234454432 2333 22 21 22335667765 6778889999999999865 6
Q ss_pred eEEEEEe------cC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee---eecC-C----CC----CCeEEEEEccC
Q 000085 2153 RLIRRLV------GV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA---RAKL-P----LS----GSIGCMEISLD 2213 (2342)
Q Consensus 2153 klIrsL~------gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~---s~~~-~----Hs----~~ItsLafSPD 2213 (2342)
+...... .. ....+.++++|..+++...++.+.++++.+..+. .... . +. .....++|+||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 6553222 11 1123344667766666666777777776432111 0000 0 00 11123789999
Q ss_pred CCEEEEEeC-CCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE
Q 000085 2214 GHSALIGVN-SSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2214 Gk~LaSGS~-DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL 2292 (2342)
+..++++.. ++... . .....+.|.+||+.+++.+.++. .+. +.++
T Consensus 265 g~~lyv~~~~~~~~~--------~-----------------------~~~~~~~v~viD~~t~~~v~~i~-~~~--p~~i 310 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEG--------T-----------------------HKFPAAEIWVMDTKTKQRVARIP-GRD--ALSM 310 (361)
T ss_dssp TTEEEEEEESSCCTT--------C-----------------------TTCCCSEEEEEETTTTEEEEEEE-CTT--CCEE
T ss_pred CCeEEEEEccCCCcc--------c-----------------------ccCCCceEEEEECCCCcEEEEEe-cCC--eeEE
Confidence 888876642 11100 0 00014589999999999999998 444 8999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCChhhhhhh
Q 000085 2293 ALNKDNTNLLVSTADKQLIVFTDPALSLKVVDQM 2326 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDGsIrVWDi~sLs~k~LdQL 2326 (2342)
+|+|||++|++++. +.|.|||..+..++.+..+
T Consensus 311 a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 99999999998887 9999999776633344443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-12 Score=154.49 Aligned_cols=257 Identities=13% Similarity=-0.023 Sum_probs=165.9
Q ss_pred EEEcCCCCEEEEEEcC---CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2002 VSITHDKEIITGGHVD---GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSpDGklLASGS~D---GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
++|+|||++|+....+ ..|.+||+.+++......++...+.++.|+|||++|+.++.++.|.+||+.++.......
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~- 119 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT- 119 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-
Confidence 6899999988776543 368888998887655444444334458899999999999999999999998764322111
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEE-----eCCCcEEEEECCCCe
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSC-----SDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSG-----S~DGtIrIWDLrTGk 2153 (2342)
.+. .++++|..++....+... .+ ....++|+|+++.++.+ ..+..|++||+.+++
T Consensus 120 ~~~------~~~~~g~~l~~~~~~~~~---------~~-----~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (396)
T 3c5m_A 120 VDE------EWKGYGTWVANSDCTKLV---------GI-----EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE 179 (396)
T ss_dssp CCT------TEEEEEEEEECTTSSEEE---------EE-----EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred ccc------ccCCCCCEEEeccCCccc---------cc-----cccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence 010 134444444332221100 00 01124578888877654 466789999999988
Q ss_pred EEEEEecC-CcEEEEEec-CCcEEEEEeCC------CeEEEEEeCCceeeeecCCC-CCCeEEEEEccCCCEEEEEeCCC
Q 000085 2154 LIRRLVGV-DAHAVSLSS-EGVIMTWNKLQ------HTLSSFTLNGVLVARAKLPL-SGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2154 lIrsL~gh-~vssLSfSp-DG~IlVwdssd------GsI~I~dlnG~~L~s~~~~H-s~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
........ ....+.|+| ||..+++...+ ..|.++++.+.......... ...+..++|+|||++|+.++.+.
T Consensus 180 ~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 180 LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 76555432 367889999 78866665433 35778887665433322211 23588899999999888765221
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec-CCCEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK-DNTNLLV 2303 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP-DG~~LaS 2303 (2342)
. ..++.|++||+.+++...... .. ... +.|+| ||++|++
T Consensus 260 ~------------------------------------~~~~~l~~~d~~~g~~~~l~~--~~-~~~-~~~s~~dg~~l~~ 299 (396)
T 3c5m_A 260 G------------------------------------QTDRVIYKANPETLENEEVMV--MP-PCS-HLMSNFDGSLMVG 299 (396)
T ss_dssp T------------------------------------TCCEEEEEECTTTCCEEEEEE--CC-SEE-EEEECSSSSEEEE
T ss_pred C------------------------------------CccceEEEEECCCCCeEEeee--CC-CCC-CCccCCCCceEEE
Confidence 1 013459999999887544332 11 233 89999 9998887
Q ss_pred Ee----------------CCCcEEEEeCCCCC
Q 000085 2304 ST----------------ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2304 GS----------------sDGsIrVWDi~sLs 2319 (2342)
++ .++.|++|+..+..
T Consensus 300 ~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 300 DGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EECCC----------CCCCCCEEEEEETTTTB
T ss_pred ecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 65 34789999976543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-11 Score=147.52 Aligned_cols=277 Identities=8% Similarity=-0.028 Sum_probs=173.9
Q ss_pred CCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceec
Q 000085 1965 SGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1965 sD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL 2034 (2342)
.|+.+.+|+..++... ..+.. +... .++|+|||+++++++ .+++|.+||..+++.+.++
T Consensus 29 ~d~~v~v~D~~t~~~~------~~i~~---g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL------GMVPT---AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTTCCEE------EEEEC---CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred ccCeEEEEECCCCeEE------EEecC---CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence 3568889986553211 11111 2222 589999999888876 3678999999998888776
Q ss_pred ccC------CCCeEEEEecCCCCEEEEEeC--CCceEEEeccCCccccc-cccCCC--------CCCccccccCCCCCce
Q 000085 2035 SGH------CAPVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSRT-GTIEPS--------SGMGTPGNSIGSSTPA 2097 (2342)
Q Consensus 2035 ~GH------t~~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~t-~~~~~~--------~~V~svs~SpDG~~La 2097 (2342)
..+ ......++++|||++|++++. +++|.+||+.+++.... ...... .....++++++|..+.
T Consensus 98 ~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp EECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred EcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEE
Confidence 532 345678999999999998874 68999999998766554 311110 0111233334443332
Q ss_pred eecCC-CccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEEec------------CC
Q 000085 2098 NASAD-KSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR--LIRRLVG------------VD 2162 (2342)
Q Consensus 2098 s~s~D-~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk--lIrsL~g------------h~ 2162 (2342)
..... +...... .....+..+..++ .+.+++++..++..+.++.|.++|+..+. .+..+.. ..
T Consensus 178 v~~~~~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 178 INLGEDGKVASQS-RSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EEECTTSSEEEEE-ECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred EEECCCCcEeeec-cccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 22211 1100000 0001122222222 23346778788888889999999997553 2333221 11
Q ss_pred cEEEEEecCCcEEEEEeC-----------CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2163 AHAVSLSSEGVIMTWNKL-----------QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwdss-----------dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
...+++++||..++.... .+.+.+|+.....+......+. +.+++|+|||++|++++
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n---------- 323 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD---------- 323 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC----------
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC----------
Confidence 234789999765444322 3479999987444333322243 99999999999998764
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC--eEEEEEecCCCCCeEEEEEecCCC
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL--KVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg--k~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
++.|.+||..++ +.+.++. .++.....++++|+|+
T Consensus 324 --------------------------------~~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 324 --------------------------------GGNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp --------------------------------SSCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred --------------------------------CCeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 146999999999 9999886 5778889999999985
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-10 Score=136.71 Aligned_cols=229 Identities=11% Similarity=0.024 Sum_probs=160.5
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC----CceEEEeccCCcccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD----TTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D----GTVrVWDl~tg~~i~ 2074 (2342)
...++|+++|++++++..++.|++||..+++.......+...|.+++++++|++++++..+ +.|.+||..++....
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 3568999999988888889999999999887665554567889999999999988887776 689999887642110
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEE
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD------SSDLLLHS 2148 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~------DGtIrIWD 2148 (2342)
.. .-..+...+.+++++|++.++++... .+.|..+|
T Consensus 127 ~~--------------------------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~ 168 (333)
T 2dg1_A 127 II--------------------------------------EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS 168 (333)
T ss_dssp EE--------------------------------------CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC
T ss_pred EE--------------------------------------ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEe
Confidence 00 00113456889999999988877654 35677777
Q ss_pred CCCCeEEEEEec-CCcEEEEEecCCcE-EEEEeCCCeEEEEEeC--Cceeee----e--cCCCCCCeEEEEEccCCCEEE
Q 000085 2149 IRRGRLIRRLVG-VDAHAVSLSSEGVI-MTWNKLQHTLSSFTLN--GVLVAR----A--KLPLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2149 LrTGklIrsL~g-h~vssLSfSpDG~I-lVwdssdGsI~I~dln--G~~L~s----~--~~~Hs~~ItsLafSPDGk~La 2218 (2342)
..+++....... .....+++++||.. ++.+..++.|.+|+.. +..+.. . .......+..++++++|++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v 248 (333)
T 2dg1_A 169 PDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV 248 (333)
T ss_dssp TTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred CCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEE
Confidence 766655433222 23678899999984 4555667899999984 432211 0 111114678899999998777
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC------CeEEE
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ------DITAL 2292 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~------~ItsL 2292 (2342)
+... ++.|.+||. +++.+..+. .+.. .+.++
T Consensus 249 ~~~~-----------------------------------------~~~v~~~d~-~g~~~~~~~-~~~~~~g~~~~~~~~ 285 (333)
T 2dg1_A 249 AMYG-----------------------------------------QGRVLVFNK-RGYPIGQIL-IPGRDEGHMLRSTHP 285 (333)
T ss_dssp EEET-----------------------------------------TTEEEEECT-TSCEEEEEE-CTTGGGTCSCBCCEE
T ss_pred EEcC-----------------------------------------CCEEEEECC-CCCEEEEEE-cCCCccccccCcceE
Confidence 5531 467899998 566666665 2222 68999
Q ss_pred EEecCCCEEEEEeCCC
Q 000085 2293 ALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2293 afSPDG~~LaSGSsDG 2308 (2342)
+|++|+..|++++.++
T Consensus 286 ~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 286 QFIPGTNQLIICSNDI 301 (333)
T ss_dssp EECTTSCEEEEEEECG
T ss_pred EECCCCCEEEEEeCcc
Confidence 9999988887766653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-11 Score=159.50 Aligned_cols=245 Identities=13% Similarity=0.112 Sum_probs=168.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCC-----cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCc-----------
Q 000085 1998 SSAVVSITHDKEIITGGHVDG-----SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT----------- 2061 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DG-----sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT----------- 2061 (2342)
.+..++|||||++|+.+..++ .|++||+.+++.+.....+. .+.+++|+|||+.|+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 456699999999888776543 89999999998765433222 3678999999999999988876
Q ss_pred -----eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2062 -----ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2062 -----VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
|.+|++.++.... ..+.....|...+..+.|+|||++|+
T Consensus 205 ~~~~~v~~~~l~t~~~~~------------------------------------~~v~~~~~~~~~~~~~~~SpDg~~l~ 248 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSED------------------------------------ILCAEFPDEPKWMGGAELSDDGRYVL 248 (710)
T ss_dssp CCCCEEEEEETTSCGGGC------------------------------------EEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred CCCCEEEEEECCCCcccc------------------------------------eEEeccCCCCeEEEEEEEcCCCCEEE
Confidence 7778776542100 01111123556678999999999988
Q ss_pred EEeC-----CCcEEEEECCC------Ce-EEEEEecCC-cEEEEEecCCcEEEEEeCC----CeEEEEEeCCcee--eee
Q 000085 2137 SCSD-----SSDLLLHSIRR------GR-LIRRLVGVD-AHAVSLSSEGVIMTWNKLQ----HTLSSFTLNGVLV--ARA 2197 (2342)
Q Consensus 2137 SGS~-----DGtIrIWDLrT------Gk-lIrsL~gh~-vssLSfSpDG~IlVwdssd----GsI~I~dlnG~~L--~s~ 2197 (2342)
.++. +..|++||+.+ +. ....+..+. .....++++|..+++.... ..|.+|++.+... ...
T Consensus 249 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 249 LSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp EEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred EEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 7764 56899999987 53 345554432 2334588898877665442 3688888865321 112
Q ss_pred cCCCCC--CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2198 KLPLSG--SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2198 ~~~Hs~--~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
..+|.. .+..++|++++.++++...++. ..|.+||+.++
T Consensus 329 l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~---------------------------------------~~l~~~~~~~g 369 (710)
T 2xdw_A 329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVK---------------------------------------NTLQLHDLATG 369 (710)
T ss_dssp EECCCSSCEEEEEEEETTTEEEEEEEETTE---------------------------------------EEEEEEETTTC
T ss_pred ccCCCCCCeEEEEEEEcCCEEEEEEEECCE---------------------------------------EEEEEEECCCC
Confidence 223433 6888999877777776653221 25788898788
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNLLVS----TADKQLIVFTDPALS 2319 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~LaSG----SsDGsIrVWDi~sLs 2319 (2342)
+.+..+. .+.+.|.+++++|++..|+.. ...++|++||..+..
T Consensus 370 ~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 370 ALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8778887 567788999999999776643 245789999976543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-11 Score=157.91 Aligned_cols=279 Identities=12% Similarity=0.007 Sum_probs=175.9
Q ss_pred eeEEEEEcCCCCEEEEE--EcCCcEEEEecCCcccceecccCCCCeE---------EEEec--CCCCE-EEEEeC-CCce
Q 000085 1998 SSAVVSITHDKEIITGG--HVDGSIKLLTSDGAKTLETASGHCAPVT---------CLALS--SDSNF-LVTGSQ-DTTI 2062 (2342)
Q Consensus 1998 Svt~VafSpDGklLASG--S~DGsIrVWDl~tgkll~tL~GHt~~Vt---------cLAfS--PDG~~-LaSGS~-DGTV 2062 (2342)
.+..+++++++-+++.+ +.++...||....+.....+..|...|. ...|+ |||++ |+.++. +..|
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l 104 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRL 104 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCE
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeE
Confidence 34558899887777777 5588899999655555666777776666 56565 99998 776553 4555
Q ss_pred EEEecc--CCccccccccC----CCCCCccccccCCCCCceeecCC-----------CccccccC-------CceEEec-
Q 000085 2063 LLWRIH--RAFTSRTGTIE----PSSGMGTPGNSIGSSTPANASAD-----------KSRRRRIE-------GPIHVLR- 2117 (2342)
Q Consensus 2063 rVWDl~--tg~~i~t~~~~----~~~~V~svs~SpDG~~Las~s~D-----------~s~~~~i~-------~~l~~L~- 2117 (2342)
.+|++. +......+... +...+..++|+|||+.++....+ .+..|+.. .....+.
T Consensus 105 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 184 (662)
T 3azo_A 105 YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD 184 (662)
T ss_dssp EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC
T ss_pred EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe
Confidence 555554 20222222111 34456788999999999777654 23345543 3455666
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCC--------cEEEEECC-CC---eEEEEEec--CCcEEEEEecCCcEEEEEeCCC-
Q 000085 2118 GHHREILCCCVSSDLGVVVSCSDSS--------DLLLHSIR-RG---RLIRRLVG--VDAHAVSLSSEGVIMTWNKLQH- 2182 (2342)
Q Consensus 2118 GHs~~Vt~VafSPDg~lLaSGS~DG--------tIrIWDLr-TG---klIrsL~g--h~vssLSfSpDG~IlVwdssdG- 2182 (2342)
.+...+..++|+|||++|+.++.++ .|++||+. +| +......+ ..+..++|+|||++++....++
T Consensus 185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~ 264 (662)
T 3azo_A 185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW 264 (662)
T ss_dssp SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence 6667888999999999999887553 79999998 57 44444443 2467899999999777666667
Q ss_pred -eEEEEEeCCceeeeecCCCCCC--------eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccccc
Q 000085 2183 -TLSSFTLNGVLVARAKLPLSGS--------IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQ 2253 (2342)
Q Consensus 2183 -sI~I~dlnG~~L~s~~~~Hs~~--------ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~ 2253 (2342)
.|.+|+..+.........+... +.+++|+++++++++++. +.
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~---------------------------- 315 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA---------------------------- 315 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS----------------------------
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc----------------------------
Confidence 5555555343333322222221 567889999998887752 21
Q ss_pred ccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE-EEecCCCEEEEEeCCCc--EEEEeCCCC
Q 000085 2254 SVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL-ALNKDNTNLLVSTADKQ--LIVFTDPAL 2318 (2342)
Q Consensus 2254 s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL-afSPDG~~LaSGSsDGs--IrVWDi~sL 2318 (2342)
..|.++|+.+++ +..+. .|...+..+ +++.+.-.+++++.+.. |.+|+..+.
T Consensus 316 -----------~~l~~~d~~~~~-~~~l~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 316 -----------AVLGILDPESGE-LVDAA-GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp -----------CEEEEEETTTTE-EEECC-SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred -----------cEEEEEECCCCc-EEEec-CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 234444777666 55665 566677766 44433333344555544 444554333
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=139.76 Aligned_cols=221 Identities=11% Similarity=0.071 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCEEEEEEcC---C--cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC--------------
Q 000085 1999 SAVVSITHDKEIITGGHVD---G--SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD-------------- 2059 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~D---G--sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D-------------- 2059 (2342)
+..++|||||+.|+..+.+ + .|.+|++.+++.......+ . |.+++|+|||+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 4568999999988877654 3 3788888887765544433 3 9999999999999988754
Q ss_pred -------------CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEE
Q 000085 2060 -------------TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCC 2126 (2342)
Q Consensus 2060 -------------GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~V 2126 (2342)
..|.+||+.++ ..+..+.. . .+..+
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~----------------------------------------~~~~~l~~-~-~~~~~ 176 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESE----------------------------------------EVIEEFEK-P-RFSSG 176 (347)
T ss_dssp CC---------CEEEEEEEETTTT----------------------------------------EEEEEEEE-E-TTCEE
T ss_pred eeecCcccccCccceEEEEECCCC----------------------------------------eEEeeecC-C-Ccccc
Confidence 22333333221 11123333 3 67889
Q ss_pred EEecCCCEEEEEeCCC-------cEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC--------CeEEEEEeCC
Q 000085 2127 CVSSDLGVVVSCSDSS-------DLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ--------HTLSSFTLNG 2191 (2342)
Q Consensus 2127 afSPDg~lLaSGS~DG-------tIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd--------GsI~I~dlnG 2191 (2342)
+|+||| ++++++.++ ...||.+.+++.. .+..+ .....++|||+.+++...+ ..|.+|+ .+
T Consensus 177 ~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~ 252 (347)
T 2gop_A 177 IWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK 252 (347)
T ss_dssp EEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS
T ss_pred cCCCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC-CC
Confidence 999999 887776542 3344444455543 33323 3334459999987776533 3677777 44
Q ss_pred ceeeeecCCCCCCeEE-EEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2192 VLVARAKLPLSGSIGC-MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2192 ~~L~s~~~~Hs~~Its-LafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
. .......|...+.. +.|+ || ++++++. ++.++||
T Consensus 253 ~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~-----------------------------------------~~~~~l~ 288 (347)
T 2gop_A 253 E-VMGILDEVDRGVGQAKIKD-GK-VYFTLFE-----------------------------------------EGSVNLY 288 (347)
T ss_dssp C-EEESSTTCCSEEEEEEEET-TE-EEEEEEE-----------------------------------------TTEEEEE
T ss_pred c-eEeccccCCcccCCccEEc-Cc-EEEEEec-----------------------------------------CCcEEEE
Confidence 3 33333346778886 9999 88 7776652 4567777
Q ss_pred ECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE-EEEeCC
Q 000085 2271 DLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQL-IVFTDP 2316 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsI-rVWDi~ 2316 (2342)
+.+++....+ .+...|.+++|+| ..+++++.++.. .+|..+
T Consensus 289 -~~~g~~~~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 289 -IWDGEIKPIA--KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -EESSSEEEEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred -EcCCceEEEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 6666654433 3577899999999 677788777765 777654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-11 Score=147.12 Aligned_cols=257 Identities=9% Similarity=-0.052 Sum_probs=164.1
Q ss_pred eecCCCeEEecCC-Cce--EEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc
Q 000085 1953 LFQHGKASASPAS-GTF--LRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK 2029 (2342)
Q Consensus 1953 lf~~Gk~LaSsSs-D~t--IRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk 2029 (2342)
.-++|+.++.++. ++. +.+|+..++.. ..+... +...+..++|+|||+.|+.++.++.|++||+.+++
T Consensus 43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-------~~lt~~--~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-------TQLTEG--RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTCEE-------EECCCS--SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred CCCCCCEEEEEEcCCCCceEEEEeCCCCce-------EEeeeC--CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 3467777776665 553 66666554211 111111 11111136799999999999999999999999998
Q ss_pred cceecccCCCCeEEEE--ecCCCCEEEEE----------------------eCCCceEEEeccCCccccccccCCCCCCc
Q 000085 2030 TLETASGHCAPVTCLA--LSSDSNFLVTG----------------------SQDTTILLWRIHRAFTSRTGTIEPSSGMG 2085 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLA--fSPDG~~LaSG----------------------S~DGTVrVWDl~tg~~i~t~~~~~~~~V~ 2085 (2342)
....+..+...+.... +++++.+++.. +.+..|.+||+.++..... ......+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~ 191 (388)
T 3pe7_A 114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI--LQENQWLG 191 (388)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE--EEESSCEE
T ss_pred ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe--ecCCcccc
Confidence 7777776766665444 48999998753 2457899999988643222 22334567
Q ss_pred cccccC-CCCCceeecCCC-------cccccc-CCceEEecCCC--CCeEEEEEecCCCEEEEEeC-CC----cEEEEEC
Q 000085 2086 TPGNSI-GSSTPANASADK-------SRRRRI-EGPIHVLRGHH--REILCCCVSSDLGVVVSCSD-SS----DLLLHSI 2149 (2342)
Q Consensus 2086 svs~Sp-DG~~Las~s~D~-------s~~~~i-~~~l~~L~GHs--~~Vt~VafSPDg~lLaSGS~-DG----tIrIWDL 2149 (2342)
.+.++| ||+.++...... +..++. ......+..+. ..+..++|+|||+.|+..+. ++ .|++||+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence 788999 999886655431 122332 23344555554 35788999999997765443 22 3999999
Q ss_pred CCCeEEE--EEecCC-----cEEEEEecCCcEEEEE---------eCCCeEEEEEeCCceeeeecCCCCC----------
Q 000085 2150 RRGRLIR--RLVGVD-----AHAVSLSSEGVIMTWN---------KLQHTLSSFTLNGVLVARAKLPLSG---------- 2203 (2342)
Q Consensus 2150 rTGklIr--sL~gh~-----vssLSfSpDG~IlVwd---------ssdGsI~I~dlnG~~L~s~~~~Hs~---------- 2203 (2342)
.+++... .+.++. ...++|+|||+.+++. ..+..|++|++.+..+.... .+..
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA-RHDTSWKVFEGDRQ 350 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE-ECCCCCCCBTTBSS
T ss_pred CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec-cccCcccccccccc
Confidence 9987533 333211 1123689999877764 23457899998865554332 2433
Q ss_pred -CeEEEEEccCCCEEEEEe
Q 000085 2204 -SIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2204 -~ItsLafSPDGk~LaSGS 2221 (2342)
.+.+++|+|||+.|+.++
T Consensus 351 ~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 351 VTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp TTCCCCEECTTSSEEEEEE
T ss_pred cCCCCccCCCCCCEEEEEe
Confidence 578899999999999876
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=145.85 Aligned_cols=259 Identities=8% Similarity=0.013 Sum_probs=158.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
+.|+|||+.|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.+....+|..
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~-------------- 145 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEIL-------------- 145 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEE--------------
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc------cCCCCCEEEeccCCcccccccc--------------
Confidence 67999999999999999999999998876665555544 6667777777666666666542
Q ss_pred CCCccccccCCCCCceeec----CC--CccccccC-CceEEecCCCCCeEEEEEec-CCCEEEEEeCC------CcEEEE
Q 000085 2082 SGMGTPGNSIGSSTPANAS----AD--KSRRRRIE-GPIHVLRGHHREILCCCVSS-DLGVVVSCSDS------SDLLLH 2147 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s----~D--~s~~~~i~-~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~D------GtIrIW 2147 (2342)
...++|+++.++... .. .+..++.. .....+..+...+..+.|+| ++..++.++.+ ..|.+|
T Consensus 146 ----~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (396)
T 3c5m_A 146 ----KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV 221 (396)
T ss_dssp ----GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred ----ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence 123455665544322 11 12223321 22333445677889999999 78877766543 368899
Q ss_pred ECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCC-----CeEEEEEeCCceeeeecCCCCCCeEEEEEcc-CCCEEE
Q 000085 2148 SIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNGVLVARAKLPLSGSIGCMEISL-DGHSAL 2218 (2342)
Q Consensus 2148 DLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP-DGk~La 2218 (2342)
|+.+++........ .+..++|+|||+.+++.... +.+++|++.+........ .. ... +.|+| ||++++
T Consensus 222 d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 222 NEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMV 298 (396)
T ss_dssp ETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEE
T ss_pred ECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEE
Confidence 98766533322221 25568999999977665432 348899886433322211 11 233 89999 999888
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC-----------
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ----------- 2287 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~----------- 2287 (2342)
+++.+ .- . . ... . .......++.|++||+.+++.. .+. .+..
T Consensus 299 ~~~~~-~p---~----~-~~~----------~------~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~ 351 (396)
T 3c5m_A 299 GDGCD-AP---V----D-VAD----------A------DSYNIENDPFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGDRQI 351 (396)
T ss_dssp EEECC-C----------------------------------CCCCCCEEEEEETTTTBCC-EEE-ECCCCCCCBTTBSST
T ss_pred EecCC-cc---e----e-ecc----------c------cccccCCCCcEEEEecccCceE-Ecc-CCCCccccccccccC
Confidence 76422 10 0 0 000 0 0000012578999999888753 333 3333
Q ss_pred CeEEEEEecCCCEEEEEeC-CCcEEEEe
Q 000085 2288 DITALALNKDNTNLLVSTA-DKQLIVFT 2314 (2342)
Q Consensus 2288 ~ItsLafSPDG~~LaSGSs-DGsIrVWD 2314 (2342)
.+..++|+|||+.|+.++. ++...+|.
T Consensus 352 ~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 352 THPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp TCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCCceEccCCCeEEEEecCCCCceEEE
Confidence 2567899999999887764 56655555
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-10 Score=135.88 Aligned_cols=217 Identities=9% Similarity=-0.009 Sum_probs=161.6
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
...++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++++|+++++...++.|.+||..++.......
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~ 107 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIAD 107 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEEC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEee
Confidence 34689999998 8888889999999999887 66677788889999999999988888788999999997765332211
Q ss_pred ---cCCCCCCccccccCCCCCceee----c--------------CCCccccccCCceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2078 ---IEPSSGMGTPGNSIGSSTPANA----S--------------ADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2078 ---~~~~~~V~svs~SpDG~~Las~----s--------------~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
......+..++++++|..+++. . ...+..++.......+..+......++|+|+++.++
T Consensus 108 ~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv 187 (296)
T 3e5z_A 108 SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLV 187 (296)
T ss_dssp EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEE
T ss_pred ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEE
Confidence 1112345678899999877752 2 112233333344555666777889999999999888
Q ss_pred EEeCCCcEEEEECC-CCeE---EEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEE
Q 000085 2137 SCSDSSDLLLHSIR-RGRL---IRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2137 SGS~DGtIrIWDLr-TGkl---IrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLaf 2210 (2342)
+.+.++.|.+||+. +|.. .+.+.. .....++++++|++.+.. ++.|.+|+..|..+..... +.. +++++|
T Consensus 188 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~-~~~-~~~~~f 263 (296)
T 3e5z_A 188 SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLT-PQT-TSNLCF 263 (296)
T ss_dssp EETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEEC-SSC-CCEEEE
T ss_pred EeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEEC-CCC-ceeEEE
Confidence 88889999999997 5655 334411 124578999999977766 7889999998876665443 344 899999
Q ss_pred -ccCCCEEEEEe
Q 000085 2211 -SLDGHSALIGV 2221 (2342)
Q Consensus 2211 -SPDGk~LaSGS 2221 (2342)
+++++.|++++
T Consensus 264 ~~~d~~~L~v~t 275 (296)
T 3e5z_A 264 GGPEGRTLYMTV 275 (296)
T ss_dssp ESTTSCEEEEEE
T ss_pred ECCCCCEEEEEc
Confidence 58999888876
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-10 Score=132.49 Aligned_cols=237 Identities=10% Similarity=0.019 Sum_probs=165.0
Q ss_pred eeEEEEEcCCCCEEE-EEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1998 SSAVVSITHDKEIIT-GGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1998 Svt~VafSpDGklLA-SGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
....++++++|++++ +...++.|.+|+..++........+...+.+++++++|+++++.. ++.|.+||..+.... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 345689999999777 557789999999876543332233445688999999999777666 889999987653110 00
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
.......+.++++++++.++++...++.|.+|+..+.....
T Consensus 103 ---------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 103 ---------------------------------------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 143 (270)
T ss_dssp ---------------------------------------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred ---------------------------------------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence 00122457899999999988888888999999876554332
Q ss_pred EEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2157 RLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2157 sL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
.... .....++++++|++++.+..++.|.+|+..+.........+...+.+++++++|..+++...
T Consensus 144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~------------ 211 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN------------ 211 (270)
T ss_dssp CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT------------
T ss_pred eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC------------
Confidence 2211 23578999999998888777889999998875544333334467899999999976664421
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
++.|.+||..+..... ....+...+.+++++++|+.+++...++.|++|+
T Consensus 212 -----------------------------~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 212 -----------------------------TNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp -----------------------------TSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred -----------------------------CCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 3567888876554322 2213335789999999999888888999999999
Q ss_pred CCC
Q 000085 2315 DPA 2317 (2342)
Q Consensus 2315 i~s 2317 (2342)
.+.
T Consensus 262 ~~~ 264 (270)
T 1rwi_B 262 SLE 264 (270)
T ss_dssp CCG
T ss_pred CCC
Confidence 543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-10 Score=141.17 Aligned_cols=226 Identities=9% Similarity=0.071 Sum_probs=147.1
Q ss_pred EEEEEcC--CcEEEEec--CCcccce--ecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEecc-CCccccccccCCCC
Q 000085 2011 ITGGHVD--GSIKLLTS--DGAKTLE--TAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH-RAFTSRTGTIEPSS 2082 (2342)
Q Consensus 2011 LASGS~D--GsIrVWDl--~tgkll~--tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~-tg~~i~t~~~~~~~ 2082 (2342)
++.|++. +.|.+|++ .+++... ... ++...+..++|+|||++|++++.+ +|.+|++. ++......
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~------ 77 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA------ 77 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE------
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee------
Confidence 4555543 56888765 4554322 111 244568899999999999999988 99999987 54221100
Q ss_pred CCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE--EEEEe-------------CCCcEEEE
Q 000085 2083 GMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV--VVSCS-------------DSSDLLLH 2147 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l--LaSGS-------------~DGtIrIW 2147 (2342)
....+ +.+.+++|+|+|++ +++++ .+|++.+|
T Consensus 78 --------------------------------~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~ 124 (365)
T 1jof_A 78 --------------------------------SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF 124 (365)
T ss_dssp --------------------------------EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred --------------------------------EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence 00111 12344677888873 44543 68999999
Q ss_pred ECC-CCeEEEEEe------cCCcEEEEEecCCcEEEE-EeCCCeEEEEEeC--Ccee--eeecCC-CCCCeEEEEEccCC
Q 000085 2148 SIR-RGRLIRRLV------GVDAHAVSLSSEGVIMTW-NKLQHTLSSFTLN--GVLV--ARAKLP-LSGSIGCMEISLDG 2214 (2342)
Q Consensus 2148 DLr-TGklIrsL~------gh~vssLSfSpDG~IlVw-dssdGsI~I~dln--G~~L--~s~~~~-Hs~~ItsLafSPDG 2214 (2342)
++. +|+....+. ......++++|||+.++. +..++.|.+|++. |... .....+ |...+..++|+|||
T Consensus 125 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 125 SVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp EECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred ccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence 997 576654443 234788999999986654 4446799999996 4332 112222 45679999999999
Q ss_pred CEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC--CCeEE---EEEec------
Q 000085 2215 HSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH--TLKVF---HVLKL------ 2283 (2342)
Q Consensus 2215 k~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~--Tgk~L---~tL~l------ 2283 (2342)
+++++++. .++.|.+|++. +++.. ..+..
T Consensus 205 ~~l~v~~~----------------------------------------~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 205 NYLYALME----------------------------------------AGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp SEEEEEET----------------------------------------TTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CEEEEEEC----------------------------------------CCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 99987752 14578888654 56542 22221
Q ss_pred CCCC------CeEEEE-EecCCCEEEEEeCCC------cEEEEeCC
Q 000085 2284 GEGQ------DITALA-LNKDNTNLLVSTADK------QLIVFTDP 2316 (2342)
Q Consensus 2284 gHs~------~ItsLa-fSPDG~~LaSGSsDG------sIrVWDi~ 2316 (2342)
+|.. .+.+++ |+|||++|++++.+. .|.+|++.
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 1222 588999 999999998776432 89999974
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-11 Score=154.02 Aligned_cols=210 Identities=11% Similarity=0.027 Sum_probs=142.0
Q ss_pred cCCCCE-EEEEEc-CCcEEEEecC--Ccccceeccc-----CCCCeEEEEecCCCCEEEEEeCC----------CceEEE
Q 000085 2005 THDKEI-ITGGHV-DGSIKLLTSD--GAKTLETASG-----HCAPVTCLALSSDSNFLVTGSQD----------TTILLW 2065 (2342)
Q Consensus 2005 SpDGkl-LASGS~-DGsIrVWDl~--tgkll~tL~G-----Ht~~VtcLAfSPDG~~LaSGS~D----------GTVrVW 2065 (2342)
||||+. |+.++. +..|++|++. +......+.. |...+.+++|+|||+.|++++.| .+|.+|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 499998 776654 5567777765 3033445555 67789999999999999999887 589999
Q ss_pred eccC------CccccccccCCCCCCccccccCCCCCceeecCCC---------ccccccC--C---ce-EEecCCCCCeE
Q 000085 2066 RIHR------AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK---------SRRRRIE--G---PI-HVLRGHHREIL 2124 (2342)
Q Consensus 2066 Dl~t------g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~---------s~~~~i~--~---~l-~~L~GHs~~Vt 2124 (2342)
|+.+ +.. ..........+..+.++|||+.++....+. +..++.. . .. ....+|...+.
T Consensus 167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 9987 432 222203345667789999999997766442 2334443 2 23 33345678899
Q ss_pred EEEEecCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCC----------cEEEEEecCCcEEEEEeCCCeEEEEEe--C
Q 000085 2125 CCCVSSDLGVVVSCSDSS--DLLLHSIRRGRLIRRLVGVD----------AHAVSLSSEGVIMTWNKLQHTLSSFTL--N 2190 (2342)
Q Consensus 2125 ~VafSPDg~lLaSGS~DG--tIrIWDLrTGklIrsL~gh~----------vssLSfSpDG~IlVwdssdGsI~I~dl--n 2190 (2342)
.++|+|||+++++++.|| .|.+||+.+++.......+. +..++++++|.+++.... +.+++|.+ .
T Consensus 246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~ 324 (662)
T 3azo_A 246 QAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE 324 (662)
T ss_dssp EEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred ceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence 999999999888888888 67777776777654433321 346888999999888877 88888854 4
Q ss_pred CceeeeecCCCCCCeEEEEEccCCCEEE
Q 000085 2191 GVLVARAKLPLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2191 G~~L~s~~~~Hs~~ItsLafSPDGk~La 2218 (2342)
+..+... ..|...+.++. ++++..++
T Consensus 325 ~~~~~~l-~~~~~~~~~~~-s~~~~~~~ 350 (662)
T 3azo_A 325 SGELVDA-AGPWTEWAATL-TVSGTRAV 350 (662)
T ss_dssp TTEEEEC-CSSCCEEEEEE-EEETTEEE
T ss_pred CCcEEEe-cCCCCeEEEEE-ecCCCEEE
Confidence 4444332 33666777661 44555443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-10 Score=131.65 Aligned_cols=220 Identities=12% Similarity=0.157 Sum_probs=152.2
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEE-cCCCCEEEEEEc-CCcEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSI-THDKEIITGGHV-DGSIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~Vaf-SpDGklLASGS~-DGsIrVWDl~tgkll~ 2032 (2342)
++|...++...++.|++|+... ... +.+... ............+++ .+++++++++.. ++.|++|| .+++.+.
T Consensus 39 ~~g~l~v~~~~~~~i~~~d~~g-~~~--~~~~~~-~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~ 113 (286)
T 1q7f_A 39 AQNDIIVADTNNHRIQIFDKEG-RFK--FQFGEC-GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVR 113 (286)
T ss_dssp TTCCEEEEEGGGTEEEEECTTS-CEE--EEECCB-SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEE
T ss_pred CCCCEEEEECCCCEEEEECCCC-cEE--EEeccc-CCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEE
Confidence 3455566656677888887542 111 111100 000112334567888 578887777654 89999999 5566666
Q ss_pred ecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2033 TAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2033 tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
.+. .+...+.+++++++|+++++.+.++.|.+||.... .....
T Consensus 114 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~----------------------------------- 157 (286)
T 1q7f_A 114 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKF----------------------------------- 157 (286)
T ss_dssp EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEE-----------------------------------
T ss_pred EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEe-----------------------------------
Confidence 553 34567899999999998888888899999986431 11000
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEEeCCC-eEEE
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQH-TLSS 2186 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwdssdG-sI~I 2186 (2342)
...++...+.+++++++++++++.+.++.|++||. +++.+..+..+ ....++++++|.+++.+..++ .|.+
T Consensus 158 ---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~ 233 (286)
T 1q7f_A 158 ---GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI 233 (286)
T ss_dssp ---ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred ---CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE
Confidence 00134456889999999998888888999999997 56777777543 367899999999999887775 9999
Q ss_pred EEeCCceeeeecCC-CCCCeEEEEEccCCCEEEE
Q 000085 2187 FTLNGVLVARAKLP-LSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2187 ~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~LaS 2219 (2342)
|+.++..+...... ....+.+++++|+|+++++
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 234 FTQDGQLISALESKVKHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp ECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred ECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence 99888766554332 2335789999999987775
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-10 Score=135.91 Aligned_cols=224 Identities=7% Similarity=-0.025 Sum_probs=145.2
Q ss_pred EEEEEcCCCCEEEEEE---------cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC---Cc--eEEE
Q 000085 2000 AVVSITHDKEIITGGH---------VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD---TT--ILLW 2065 (2342)
Q Consensus 2000 t~VafSpDGklLASGS---------~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D---GT--VrVW 2065 (2342)
...++ ||+.++... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ +. |.+|
T Consensus 18 ~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 18 SDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp EEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred ccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 34566 888766542 36789999999876543 3 568899999999999988754 34 6666
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-----
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD----- 2140 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~----- 2140 (2342)
++.++... .+..+.. +.+++|+|||+.|+.++.
T Consensus 91 ~~~~g~~~-----------------------------------------~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 91 DLETLSSK-----------------------------------------KILEAKN-IRSLEWNEDSRKLLIVGFKRRED 128 (347)
T ss_dssp ETTTTEEE-----------------------------------------EEEEESE-EEEEEECTTSSEEEEEEECCCC-
T ss_pred ECCCCceE-----------------------------------------EEEcCCC-ccceeECCCCCEEEEEEccCCCc
Confidence 66653211 1111222 777778888877776653
Q ss_pred ----------------------CCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC------C-eEEEEEeCC
Q 000085 2141 ----------------------SSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ------H-TLSSFTLNG 2191 (2342)
Q Consensus 2141 ----------------------DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd------G-sI~I~dlnG 2191 (2342)
...|++||+.+++.++.+....+..++|+||| +++....+ . ...+|.+++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~ 207 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED 207 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCC
Confidence 25799999999887444432267788999999 66655332 1 334444433
Q ss_pred ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2192 VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2192 ~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
....... .+ ..+.++ +|||++|+.++.+.... ......|.+||
T Consensus 208 ~~~~~l~-~~-~~~~~~--spdg~~l~~~~~~~~~~---------------------------------~~~~~~l~~~d 250 (347)
T 2gop_A 208 GKEEKMF-EK-VSFYAV--DSDGERILLYGKPEKKY---------------------------------MSEHNKLYIYD 250 (347)
T ss_dssp TEEEEEE-EE-ESEEEE--EECSSCEEEEECCSSSC---------------------------------CCSSCEEEEEC
T ss_pred CceEEec-cC-cceeeE--CCCCCEEEEEEccccCC---------------------------------ccccceEEEEC
Confidence 2332222 23 455554 99999988776332200 00145788898
Q ss_pred CCCCeEEEEEecCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2272 LHTLKVFHVLKLGEGQDITA-LALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2272 L~Tgk~L~tL~lgHs~~Its-LafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+++... +..+|...+.. +.|+ |+ .+++++.|+.+++| ..
T Consensus 251 --~~~~~~-l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 251 --GKEVMG-ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp --SSCEEE-SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred --CCceEe-ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 666443 33256777886 9999 88 88899999999999 76
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-08 Score=119.27 Aligned_cols=270 Identities=10% Similarity=0.024 Sum_probs=185.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee-cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET-ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t-L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
.+.+++++++|+++++...++.|.+||.. ++.... +..+...+.+++++++|.+.++...++.|..||... .. ...
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~ 92 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-II-KEY 92 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EEE
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE-EEE
Confidence 35669999999988877668899999988 554322 233557799999999999888887789999999763 21 111
Q ss_pred -ccCCCCCCccccccCCCCCceeecCC-CccccccCCceEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2077 -TIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPIHVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2077 -~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.......+..+.+.++|...++...+ .+..++.......+ ..+...+.++++++++.+.++...++.|..||. ++
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG 171 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC
Confidence 11233456677888888766655433 34444443333322 234567899999999988888777899999999 77
Q ss_pred eEEEE-Eec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2153 RLIRR-LVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2153 klIrs-L~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
+.... +.. .....++++++|.+.+.+...+.+..|+..+.........+...+.+++++++|+..++..
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------- 243 (299)
T 2z2n_A 172 DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEW-------- 243 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEET--------
T ss_pred cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEecc--------
Confidence 66543 221 2367889999999887777778899998865433221222557899999999998666441
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK-LGEGQDITALALNKDNTNLLVSTADK 2308 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~-lgHs~~ItsLafSPDG~~LaSGSsDG 2308 (2342)
.++.|.+||. +++. ..+. ..+...+.++++ ++|..+++.. .+
T Consensus 244 ---------------------------------~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~ 286 (299)
T 2z2n_A 244 ---------------------------------GANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CD 286 (299)
T ss_dssp ---------------------------------TTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TT
T ss_pred ---------------------------------CCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CC
Confidence 1456888888 4543 3332 144567999999 8888666554 67
Q ss_pred cEEEEeCC
Q 000085 2309 QLIVFTDP 2316 (2342)
Q Consensus 2309 sIrVWDi~ 2316 (2342)
.|..++..
T Consensus 287 ~l~~~~~~ 294 (299)
T 2z2n_A 287 KIGKLTLI 294 (299)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEcC
Confidence 77777744
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.6e-11 Score=155.85 Aligned_cols=241 Identities=12% Similarity=0.023 Sum_probs=154.9
Q ss_pred ceeEEEEEcCCCCEEE-----EEEcCCcEEEEecCCcccceecccCCCCe--EEEEecCCCCEEEEEeCCCc--------
Q 000085 1997 RSSAVVSITHDKEIIT-----GGHVDGSIKLLTSDGAKTLETASGHCAPV--TCLALSSDSNFLVTGSQDTT-------- 2061 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLA-----SGS~DGsIrVWDl~tgkll~tL~GHt~~V--tcLAfSPDG~~LaSGS~DGT-------- 2061 (2342)
..+..++|||||++|| .|+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|.+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 3456799999999888 44445789999999988651 1122222 68999999999999999876
Q ss_pred -----eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2062 -----ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2062 -----VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
|++|++.++.... ..+.....|...+.++.|+|||++++
T Consensus 199 ~~~~~v~~~~l~t~~~~~------------------------------------~lv~~~~~~~~~~~~~~~SpDG~~l~ 242 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKD------------------------------------TVVHERTGDPTTFLQSDLSRDGKYLF 242 (695)
T ss_dssp GGGCEEEEEETTSCGGGC------------------------------------EEEECCCCCTTCEEEEEECTTSCCEE
T ss_pred CCCCEEEEEECCCCchhc------------------------------------eEEEecCCCCEEEEEEEECCCCCEEE
Confidence 8899887642110 01122234566788999999999998
Q ss_pred EEeCCC----cEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEe---CCCeEEEEEeCCcee---eeecCCC-CCC
Q 000085 2137 SCSDSS----DLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNK---LQHTLSSFTLNGVLV---ARAKLPL-SGS 2204 (2342)
Q Consensus 2137 SGS~DG----tIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwds---sdGsI~I~dlnG~~L---~s~~~~H-s~~ 2204 (2342)
.++.++ .|++||..++.......... .....+ ++|.+++... .++.|.+|++.+... ......+ ...
T Consensus 243 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 321 (695)
T 2bkl_A 243 VYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS 321 (695)
T ss_dssp EEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred EEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence 877666 67777766665433333222 333334 6777444333 246788888754221 2222222 456
Q ss_pred eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCe--EEEEECCCCeEEEEEe
Q 000085 2205 IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPS--ICFLDLHTLKVFHVLK 2282 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGs--IrIWDL~Tgk~L~tL~ 2282 (2342)
+..++++ ++.++++... |+. |.++++ +++....+.
T Consensus 322 l~~~~~~-~~~lv~~~~~-----------------------------------------dg~~~l~~~~~-~g~~~~~l~ 358 (695)
T 2bkl_A 322 LLSVSIV-GGHLSLEYLK-----------------------------------------DATSEVRVATL-KGKPVRTVQ 358 (695)
T ss_dssp EEEEEEE-TTEEEEEEEE-----------------------------------------TTEEEEEEEET-TCCEEEECC
T ss_pred EEEEEEE-CCEEEEEEEE-----------------------------------------CCEEEEEEEeC-CCCeeEEec
Confidence 8888888 5666665542 333 444454 355556665
Q ss_pred cCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCC
Q 000085 2283 LGEGQDITALALNKDNTNLLVS----TADKQLIVFTDPALS 2319 (2342)
Q Consensus 2283 lgHs~~ItsLafSPDG~~LaSG----SsDGsIrVWDi~sLs 2319 (2342)
..+...|..++++|++..|+.. ...++|++||..+..
T Consensus 359 ~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 359 LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3336678888999999877733 345789999976543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-09 Score=127.59 Aligned_cols=213 Identities=12% Similarity=0.094 Sum_probs=164.3
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcccceecccCC-CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCC
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHC-APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgkll~tL~GHt-~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
..+++|++++.|+.|++||.++|+.+.++..|. ..+.+++++|+|++++ +.++.|..||. +++.+..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~--------- 70 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN--------- 70 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE---------
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE---------
Confidence 356789999999999999999999999988776 5789999999999999 45788999988 5432211
Q ss_pred ccccccCCCCCceeecCCCccccccCCceEEecCC-CCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEEecC-
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH-HREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRRLVGV- 2161 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH-s~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrsL~gh- 2161 (2342)
+..+ ...+.++.+.++|+++++.+. ++.|..+|. +|+.+..+...
T Consensus 71 -------------------------------~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~ 118 (276)
T 3no2_A 71 -------------------------------IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET 118 (276)
T ss_dssp -------------------------------EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC
T ss_pred -------------------------------EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC
Confidence 1222 245778899999999999887 788888885 78888777521
Q ss_pred -------CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccc
Q 000085 2162 -------DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNI 2234 (2342)
Q Consensus 2162 -------~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~L 2234 (2342)
....++..++|.+++.+..++.+..|+.+|+.+-.... ...+.++.+.++|+.+++++.
T Consensus 119 ~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~------------ 184 (276)
T 3no2_A 119 GIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKL--SGTPFSSAFLDNGDCLVACGD------------ 184 (276)
T ss_dssp SCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC--SSCCCEEEECTTSCEEEECBT------------
T ss_pred CCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEEC--CCCccceeEcCCCCEEEEeCC------------
Confidence 13456789999999999889999999999877665543 245667888899998886641
Q ss_pred cccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC-----CCCCeEEEEEecCCCEEEEEe
Q 000085 2235 QGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG-----EGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2235 w~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg-----Hs~~ItsLafSPDG~~LaSGS 2305 (2342)
++.|..+|..+|+.+..+... .-..+.++...++|..+++..
T Consensus 185 -----------------------------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 185 -----------------------------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp -----------------------------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred -----------------------------CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 456899999999998888621 112378888999998887763
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.2e-09 Score=136.85 Aligned_cols=315 Identities=10% Similarity=0.081 Sum_probs=195.3
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecC--Ccccceeccc
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSD--GAKTLETASG 2036 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~--tgkll~tL~G 2036 (2342)
.+++...++.+.+++..++.... .+.. +. ....+.|+|||+++++++.|+.|.+||+. +++.+..+..
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~------~i~~---g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKT------VLDT---GY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEE------EEEC---SS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEECCCCeEEE------EEeC---CC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 44566677889999876632211 1111 11 23358999999999999999999999996 7777777765
Q ss_pred CCCCeEEEEec----CCCCEEEEEeC-CCceEEEeccCCccccccccC---------C-CCCCccccccCCCCCceeecC
Q 000085 2037 HCAPVTCLALS----SDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIE---------P-SSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2037 Ht~~VtcLAfS----PDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~---------~-~~~V~svs~SpDG~~Las~s~ 2101 (2342)
..+ ...++|+ |||+++++++. +++|.|+|..+.+.+...... + ...+..+..++++..++....
T Consensus 239 G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 239 GSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp CSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 444 5789999 69998887664 599999998887655543211 0 113445555666554433332
Q ss_pred CCc--cccccCC---ceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEEec-----CCcEEEE-Ee
Q 000085 2102 DKS--RRRRIEG---PIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRRLVG-----VDAHAVS-LS 2169 (2342)
Q Consensus 2102 D~s--~~~~i~~---~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrsL~g-----h~vssLS-fS 2169 (2342)
+.. ..++... .............++.|+|+++++++++ .++.|.++|+.+++.+..+.. |....+. ++
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~ 397 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 397 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence 221 1122111 1111112334566889999999886655 678999999999998887764 2222222 57
Q ss_pred cCCc-EEEEE-eCCCeEEEEEeCC--------ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2170 SEGV-IMTWN-KLQHTLSSFTLNG--------VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2170 pDG~-IlVwd-ssdGsI~I~dlnG--------~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
|++. +.+.. ..++.|.+++... +.+..... ....-..+..+|+++++.+...-+
T Consensus 398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-~g~g~~~i~~~p~~~~l~v~~~~~--------------- 461 (567)
T 1qks_A 398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-LGGGSLFIKTHPNSQYLYVDATLN--------------- 461 (567)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-SCSCCCCEECCTTCSEEEEECTTC---------------
T ss_pred CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-CCCCCEEEEeCCCCCeEEEecCCC---------------
Confidence 7744 33333 2457899998763 22222221 112223466788888887552100
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCC-----e-EEEEEec-------CCCCCeEEEEEecCCCEEEEEe-
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL-----K-VFHVLKL-------GEGQDITALALNKDNTNLLVST- 2305 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg-----k-~L~tL~l-------gHs~~ItsLafSPDG~~LaSGS- 2305 (2342)
++.. ..++|.|+|+.+. . .+..+.. .-...+..+.|+++|+++.++.
T Consensus 462 ---------~~~~----------~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~ 522 (567)
T 1qks_A 462 ---------PEAE----------ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVW 522 (567)
T ss_dssp ---------SSHH----------HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred ---------CCcc----------cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEee
Confidence 0000 0257999998877 2 2233431 1245789999999999888763
Q ss_pred ----CCCcEEEEeCCCCC
Q 000085 2306 ----ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2306 ----sDGsIrVWDi~sLs 2319 (2342)
.++.|.|+|..++.
T Consensus 523 ~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 523 NGKDQESALVVVDDKTLE 540 (567)
T ss_dssp CCTTSCCEEEEEETTTTE
T ss_pred cCCCCCCcEEEEECCCce
Confidence 37999999987764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-08 Score=116.18 Aligned_cols=270 Identities=11% Similarity=0.053 Sum_probs=183.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~-tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
...+++++++|++.++...++.|.+||.. ++... .+..+...+.++++.++|++.++...++.|..||.. +......
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec
Confidence 34568999999988887778999999988 55433 233344679999999999988887778899999987 4332111
Q ss_pred ccCCCCCCccccccCCCCCceeecCC-CccccccCCceEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPIHVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
.......+..+++.++|...++...+ .+..++.......+ ......+.++++++++++.++...++.|..+|. +++
T Consensus 99 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 177 (300)
T 2qc5_A 99 LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK 177 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc
Confidence 22223456677788888766665433 33444433333322 234567899999999997777777889999998 666
Q ss_pred EEEEEe-c--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2154 LIRRLV-G--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2154 lIrsL~-g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
...... . .....++++++|.+.+.+...+.+..|+..+.........+...+.+++++++|+..++..
T Consensus 178 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~--------- 248 (300)
T 2qc5_A 178 LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEW--------- 248 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEET---------
T ss_pred EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEecc---------
Confidence 554221 1 2367889999999888877778899998866544432223456789999999998666442
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQL 2310 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsI 2310 (2342)
.++.|..||. +++............+.++++.++|..+++.. . .|
T Consensus 249 --------------------------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i 293 (300)
T 2qc5_A 249 --------------------------------GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KI 293 (300)
T ss_dssp --------------------------------TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EE
T ss_pred --------------------------------CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ce
Confidence 1356777777 44433221112345688999999998555544 4 77
Q ss_pred EEEe
Q 000085 2311 IVFT 2314 (2342)
Q Consensus 2311 rVWD 2314 (2342)
..++
T Consensus 294 ~~~~ 297 (300)
T 2qc5_A 294 GKLN 297 (300)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7776
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.5e-10 Score=132.24 Aligned_cols=231 Identities=8% Similarity=0.030 Sum_probs=162.1
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
+++|++++..++..+.++.++.| .++....+..+...+.+++|+++|++++++..++.|.+||..++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~------- 79 (333)
T 2dg1_A 10 TLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK------- 79 (333)
T ss_dssp BCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-------
T ss_pred eeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-------
Confidence 36677777766666778888998 34556667777778899999999998888999999999998764211
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCeEEE
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS----SDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D----GtIrIWDLrTGklIr 2156 (2342)
.....+...+.++++++++++++++..+ +.|.+||..++....
T Consensus 80 ---------------------------------~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 80 ---------------------------------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp ---------------------------------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred ---------------------------------EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 1112345679999999999988887776 789999998887654
Q ss_pred EEec----CCcEEEEEecCCcEEEEEeC------CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2157 RLVG----VDAHAVSLSSEGVIMTWNKL------QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2157 sL~g----h~vssLSfSpDG~IlVwdss------dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
.+.. ..+..++++++|.+++.+.. .+.+..++..+..+.... .+...+.+++|+|+|++++.+..
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~---- 201 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTET---- 201 (333)
T ss_dssp EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEG----
T ss_pred EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeC----
Confidence 4431 23678899999998887653 245555555543332221 12345789999999997765531
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeEEEE-----E-ec-CCCCCeEEEEEecCC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHV-----L-KL-GEGQDITALALNKDN 2298 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~t-----L-~l-gHs~~ItsLafSPDG 2298 (2342)
.++.|.+||+.+ +..+.. . .. ++ ..+..++++++|
T Consensus 202 ------------------------------------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G 244 (333)
T 2dg1_A 202 ------------------------------------TANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD 244 (333)
T ss_dssp ------------------------------------GGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC
T ss_pred ------------------------------------CCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC
Confidence 135688888753 322211 1 10 22 467889999999
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000085 2299 TNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2299 ~~LaSGSsDGsIrVWDi~ 2316 (2342)
..+++...++.|.+|+..
T Consensus 245 ~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp CEEEEEETTTEEEEECTT
T ss_pred CEEEEEcCCCEEEEECCC
Confidence 988888888999999864
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.5e-10 Score=148.48 Aligned_cols=243 Identities=13% Similarity=0.101 Sum_probs=154.2
Q ss_pred eeEEEEEcCCCCEEEEEEcC-----CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCc-----------
Q 000085 1998 SSAVVSITHDKEIITGGHVD-----GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT----------- 2061 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~D-----GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT----------- 2061 (2342)
.+..++|||||++|+.++.+ ..|++||+.+|+.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 45668999999988877654 3599999999987543 112222467899999 99998887765
Q ss_pred ---eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2062 ---ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2062 ---VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSG 2138 (2342)
|.+|++.++.... ..+.....|...+..+.|+|||++|+..
T Consensus 242 ~~~v~~~~lgt~~~~~------------------------------------~lv~~~~~~~~~~~~~~~SpDG~~l~~~ 285 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSAD------------------------------------QPVFATPELPKRGHGASVSSDGRWVVIT 285 (741)
T ss_dssp CCEEEEEETTSCGGGC------------------------------------EEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CCEEEEEECCCCchhC------------------------------------EEEeccCCCCeEEEEEEECCCCCEEEEE
Confidence 6666665431100 0111112334458899999999998877
Q ss_pred eCCC-----cEEEEECCCC--eEEEEEecCC-cEEEEEecCCcEEEEEeC----CCeEEEEEeCC--ceeeeecCCCCCC
Q 000085 2139 SDSS-----DLLLHSIRRG--RLIRRLVGVD-AHAVSLSSEGVIMTWNKL----QHTLSSFTLNG--VLVARAKLPLSGS 2204 (2342)
Q Consensus 2139 S~DG-----tIrIWDLrTG--klIrsL~gh~-vssLSfSpDG~IlVwdss----dGsI~I~dlnG--~~L~s~~~~Hs~~ 2204 (2342)
+.++ .|++||+.++ ++.+.+..+. .....++++|..+++... .+.|.++++.+ .........+...
T Consensus 286 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 365 (741)
T 1yr2_A 286 SSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN 365 (741)
T ss_dssp EECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred EEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence 7544 8999999887 4144454332 222234588887776654 34588888875 2333333334555
Q ss_pred eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC
Q 000085 2205 IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG 2284 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg 2284 (2342)
+..+.++ ++.++++...++. ..|.++|+ +++....+...
T Consensus 366 l~~~~~~-~~~lv~~~~~dg~---------------------------------------~~l~~~~~-~g~~~~~l~~~ 404 (741)
T 1yr2_A 366 LESVGIA-GNRLFASYIHDAK---------------------------------------SQVLAFDL-DGKPAGAVSLP 404 (741)
T ss_dssp EEEEEEE-BTEEEEEEEETTE---------------------------------------EEEEEEET-TSCEEEECBCS
T ss_pred EEEEEEE-CCEEEEEEEECCE---------------------------------------EEEEEEeC-CCCceeeccCC
Confidence 6777777 4455555442211 23555565 45555666533
Q ss_pred CCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCC
Q 000085 2285 EGQDITALALNKDNTNLLVS----TADKQLIVFTDPALS 2319 (2342)
Q Consensus 2285 Hs~~ItsLafSPDG~~LaSG----SsDGsIrVWDi~sLs 2319 (2342)
+...|..++++|++..|+.. ...++|++||..+..
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 46678999999998766633 345789999976543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-09 Score=129.29 Aligned_cols=236 Identities=11% Similarity=0.015 Sum_probs=159.9
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
..+++. ++++.++...++.|.+||..+++.+.++.. ......++++++++..++...+++|.+||..++........
T Consensus 47 ~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~- 123 (328)
T 3dsm_A 47 QSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC- 123 (328)
T ss_dssp EEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC-
T ss_pred eEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc-
Confidence 345553 455666666789999999999999888853 45688999999985555555899999999987643221100
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrsL 2158 (2342)
.. ..++......+++ .++.++++.. .+++|.++|+.+++.+.++
T Consensus 124 ------------------------------g~----~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 124 ------------------------------PD----MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp ------------------------------TT----CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred ------------------------------CC----ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 00 0011123445666 3444444443 4899999999999998888
Q ss_pred ec-CCcEEEEEecCCcEEEEEeCC----------CeEEEEEeCCceee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2159 VG-VDAHAVSLSSEGVIMTWNKLQ----------HTLSSFTLNGVLVA-RAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2159 ~g-h~vssLSfSpDG~IlVwdssd----------GsI~I~dlnG~~L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
.. .....++++++|++++.+..+ +.+.+++.....+. ....+.......++++|++++++++.
T Consensus 169 ~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~----- 243 (328)
T 3dsm_A 169 TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN----- 243 (328)
T ss_dssp ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-----
T ss_pred EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-----
Confidence 64 335678899999977766543 68999998644333 33333334789999999999998662
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-CCCCCeEEEEEec-CCCEEEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-GEGQDITALALNK-DNTNLLVS 2304 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-gHs~~ItsLafSP-DG~~LaSG 2304 (2342)
+.|.+||..+++....... .+.....+++++| ++..+++.
T Consensus 244 --------------------------------------~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 244 --------------------------------------NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp --------------------------------------SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred --------------------------------------cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 2478888887765321110 1245689999999 45555555
Q ss_pred ----eCCCcEEEEeCC
Q 000085 2305 ----TADKQLIVFTDP 2316 (2342)
Q Consensus 2305 ----SsDGsIrVWDi~ 2316 (2342)
..++.|.+|+..
T Consensus 286 ~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 286 AIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CTTSSSEEEEEEECTT
T ss_pred ccccccCCEEEEECCC
Confidence 578999999965
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-08 Score=118.73 Aligned_cols=237 Identities=9% Similarity=0.073 Sum_probs=160.8
Q ss_pred eEEEEEcCCCCEEEE-------EEcCCcEEEEecCCcccceecc----cCCCCeEEEEecCC-CCEEEEEeCCCceEEEe
Q 000085 1999 SAVVSITHDKEIITG-------GHVDGSIKLLTSDGAKTLETAS----GHCAPVTCLALSSD-SNFLVTGSQDTTILLWR 2066 (2342)
Q Consensus 1999 vt~VafSpDGklLAS-------GS~DGsIrVWDl~tgkll~tL~----GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWD 2066 (2342)
...++|+++|+++++ +..++.|.+||..+++...... ++...+.+++++++ |+++++.. ++.|.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEe
Confidence 456899999998888 6778999999988876543222 35577999999999 66555544 44788898
Q ss_pred ccCCccccc-cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC----
Q 000085 2067 IHRAFTSRT-GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS---- 2141 (2342)
Q Consensus 2067 l~tg~~i~t-~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D---- 2141 (2342)
.. +..... .. . .. ..+...+.+++++++|++.++...+
T Consensus 99 ~~-g~~~~~~~~------------~-------------------~~-----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 141 (314)
T 1pjx_A 99 TD-GTFEEIAKK------------D-------------------SE-----GRRMQGCNDCAFDYEGNLWITAPAGEVAP 141 (314)
T ss_dssp TT-SCEEECCSB------------C-------------------TT-----SCBCBCCCEEEECTTSCEEEEECBCBCTT
T ss_pred CC-CCEEEEEec------------c-------------------CC-----CccccCCcCEEECCCCCEEEEecCccccc
Confidence 77 432110 00 0 00 0112457789999999888777665
Q ss_pred -----------CcEEEEECCCCeEEEEEec-CCcEEEEEe----cCCcE-EEEEeCCCeEEEEEeC--Ccee----eeec
Q 000085 2142 -----------SDLLLHSIRRGRLIRRLVG-VDAHAVSLS----SEGVI-MTWNKLQHTLSSFTLN--GVLV----ARAK 2198 (2342)
Q Consensus 2142 -----------GtIrIWDLrTGklIrsL~g-h~vssLSfS----pDG~I-lVwdssdGsI~I~dln--G~~L----~s~~ 2198 (2342)
+.|..||.. ++....... .....++++ ++|.. ++.+..++.|.+|+.. +... ....
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 220 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence 578888876 655443322 235678899 99964 4555667889999875 3211 1111
Q ss_pred CCCC-CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2199 LPLS-GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2199 ~~Hs-~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
..+. ..+..++++++|+++++... ++.|.+||..+++.
T Consensus 221 ~~~~~~~p~~i~~d~~G~l~v~~~~-----------------------------------------~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNNLLVANWG-----------------------------------------SSHIEVFGPDGGQP 259 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEET-----------------------------------------TTEEEEECTTCBSC
T ss_pred CCCCCCCCCceEECCCCCEEEEEcC-----------------------------------------CCEEEEEcCCCCcE
Confidence 1133 56889999999988876531 45789999887776
Q ss_pred EEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCC
Q 000085 2278 FHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVFTDP 2316 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~ 2316 (2342)
+..+. .+...+.+++|+++|+.|+++ ..++.|..|+..
T Consensus 260 ~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 260 KMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 66666 455789999999999966555 567899999954
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-09 Score=126.86 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=142.7
Q ss_pred CceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-cceec---------c
Q 000085 1966 GTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK-TLETA---------S 2035 (2342)
Q Consensus 1966 D~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk-ll~tL---------~ 2035 (2342)
++.+.+|+..++..... +..........++++++|+++++...++.|++||.+... .+..+ .
T Consensus 68 ~~~i~~~d~~~g~~~~~--------~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~ 139 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQS--------SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQ 139 (329)
T ss_dssp SCCEEEECTTTCCEEEE--------ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCST
T ss_pred CCcEEEEECCCCeEEec--------cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCc
Confidence 45677887654322111 111233445679999999999999889999999986542 44444 3
Q ss_pred cCCCCeEEEEecC-CCCEEEEEe-CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2036 GHCAPVTCLALSS-DSNFLVTGS-QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2036 GHt~~VtcLAfSP-DG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
++.....+++++| ++.++++.+ .++.|++|+.. +........ .+..+
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~-------------------~g~~~----------- 188 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGE-------------------ESSGS----------- 188 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECE-------------------ECCSS-----------
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEecc-------------------CCCCC-----------
Confidence 4556789999999 788888887 69999999943 322211100 00000
Q ss_pred EEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEE-------eCC
Q 000085 2114 HVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWN-------KLQ 2181 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwd-------ssd 2181 (2342)
....++-.....++++|+ +.++++...++.|++||..+|+.+..+... ....++++| |.++..+ ...
T Consensus 189 ~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~ 267 (329)
T 3fvz_A 189 SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEP 267 (329)
T ss_dssp SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCC
T ss_pred CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCC
Confidence 000123345789999998 777788888999999999999999988542 367788888 4444333 334
Q ss_pred CeEEEEEeC-Cceeeeec--CCCCCCeEEEEEccCCCEEEEE
Q 000085 2182 HTLSSFTLN-GVLVARAK--LPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2182 GsI~I~dln-G~~L~s~~--~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
..+.+|+.. |..+.... ..+...+.+++++|+|..+++.
T Consensus 268 ~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 268 VQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp CCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred cEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence 578888865 54444322 2366789999999999655544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.2e-09 Score=122.22 Aligned_cols=234 Identities=9% Similarity=0.070 Sum_probs=159.2
Q ss_pred cceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC-CCcccc
Q 000085 2030 TLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA-DKSRRR 2107 (2342)
Q Consensus 2030 ll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~-D~s~~~ 2107 (2342)
.+..+..+.....+++|+|+|+ +++++..++.|..|+..++ .... ......+..++++++|..+++... ..+..+
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 3445555666788999999998 7888889999999999876 2222 234455778889999987766654 344555
Q ss_pred cc-CCceEEecC-----CCCCeEEEEEecCCCEEEEE----e-------------CCCcEEEEECCCCeEEEEEecC-Cc
Q 000085 2108 RI-EGPIHVLRG-----HHREILCCCVSSDLGVVVSC----S-------------DSSDLLLHSIRRGRLIRRLVGV-DA 2163 (2342)
Q Consensus 2108 ~i-~~~l~~L~G-----Hs~~Vt~VafSPDg~lLaSG----S-------------~DGtIrIWDLrTGklIrsL~gh-~v 2163 (2342)
+. ......+.. ....+.+++++++|+++++. + ..+.|..+|.. ++........ ..
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~ 174 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP 174 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence 54 233322221 12356789999999988873 3 13456666655 5543333222 35
Q ss_pred EEEEEecCCcEEEEEeCCCeEEEEEeC--Cce-e-eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCC
Q 000085 2164 HAVSLSSEGVIMTWNKLQHTLSSFTLN--GVL-V-ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNS 2239 (2342)
Q Consensus 2164 ssLSfSpDG~IlVwdssdGsI~I~dln--G~~-L-~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~ 2239 (2342)
..+++++||++++.+..++.|.+|++. |.. . ......+...+.+++++++|+++++.
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~------------------- 235 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA------------------- 235 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-------------------
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-------------------
Confidence 789999999988666777899999985 332 1 11112245667889999999876644
Q ss_pred CCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEE-ecCCCEEEEEeCCCcEEEEe
Q 000085 2240 KQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALAL-NKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2240 ~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLaf-SPDG~~LaSGSsDGsIrVWD 2314 (2342)
++.|.+||.. ++.+..+. .+.. +++++| +|+++.|++++.++ +..++
T Consensus 236 ------------------------~~~v~~~~~~-g~~~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~ 283 (296)
T 3e5z_A 236 ------------------------GDGVHVLTPD-GDELGRVL-TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIE 283 (296)
T ss_dssp ------------------------TTEEEEECTT-SCEEEEEE-CSSC-CCEEEEESTTSCEEEEEETTE-EEEEE
T ss_pred ------------------------CCeEEEECCC-CCEEEEEE-CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEE
Confidence 2458999986 77777777 4555 899999 58999999988764 44444
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-08 Score=122.55 Aligned_cols=290 Identities=9% Similarity=0.027 Sum_probs=180.9
Q ss_pred cCCCCEEEEEEc--CC---cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccC
Q 000085 2005 THDKEIITGGHV--DG---SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHR 2069 (2342)
Q Consensus 2005 SpDGklLASGS~--DG---sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~t 2069 (2342)
.|+++++..... .+ +|.+||..+++.+.++.....+ .++++|||++++.+. .+++|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 466665554432 22 8899999999988877755444 899999999998876 368899999987
Q ss_pred CccccccccC-C-----CCCCccccccCCCCCceeecCC---Cccccc-cCCceEE-ecCCCCCeEEEEEecCC-CEEEE
Q 000085 2070 AFTSRTGTIE-P-----SSGMGTPGNSIGSSTPANASAD---KSRRRR-IEGPIHV-LRGHHREILCCCVSSDL-GVVVS 2137 (2342)
Q Consensus 2070 g~~i~t~~~~-~-----~~~V~svs~SpDG~~Las~s~D---~s~~~~-i~~~l~~-L~GHs~~Vt~VafSPDg-~lLaS 2137 (2342)
.+...+.... . ......+.++|||+.+.+.... .+..++ ..+.+.. +.. . .|+.+.+++ ..+++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~t~~~~~~~i~~-~---~~~~~~~~~~~~~~~ 182 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-P---TCYHIHPGAPSTFYL 182 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEECCCCEEeEEcCC-C---ceEEEEeCCCceEEE
Confidence 6554443211 0 1234578899999998776532 223333 1122222 211 1 234555654 45677
Q ss_pred EeCCCcEEEEECCCCeEEEEEe------cCCc--EEEEEecCCcEEEEEeCCCeEEEEEeCCcee---eeecC------C
Q 000085 2138 CSDSSDLLLHSIRRGRLIRRLV------GVDA--HAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV---ARAKL------P 2200 (2342)
Q Consensus 2138 GS~DGtIrIWDLrTGklIrsL~------gh~v--ssLSfSpDG~IlVwdssdGsI~I~dlnG~~L---~s~~~------~ 2200 (2342)
.+.||.+.++|. +++.+.... +... ....+.+++.-+++....+.+.++++.+... ..... .
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~ 261 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA 261 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc
Confidence 888999999999 887764332 1111 1234566665555555667777777753211 11000 0
Q ss_pred ---CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2201 ---LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2201 ---Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
.......+.+++|++.++++...+.. +.. ...++.|.++|..+++.
T Consensus 262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~--------~~~-----------------------~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSA--------WKL-----------------------HAAAKEVTSVTGLVGQT 310 (373)
T ss_pred cceecCceEeEEECCCCCEEEEEeccCCc--------ccc-----------------------cCCCCeEEEEECCCCEE
Confidence 11234447788888877766422110 000 00146899999999999
Q ss_pred EEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCChhhhhhhhhccccCCCc
Q 000085 2278 FHVLKLGEGQDITALALNKDNT-NLLVST-ADKQLIVFTDPALSLKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~-~LaSGS-sDGsIrVWDi~sLs~k~LdQLLk~GWegDGL 2336 (2342)
+.++..++ ...+++|+|||+ .++++. .++.|.|||..+.+ .+..+...|-.+.+|
T Consensus 311 v~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~--vv~~i~~vG~~P~~~ 367 (373)
T 2mad_H 311 SSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD--QDQSTVELGSGPQVL 367 (373)
T ss_pred EEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC--EEeeecCCCCCCcEE
Confidence 99998443 589999999999 777777 58999999977664 334434455555554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-08 Score=115.43 Aligned_cols=217 Identities=6% Similarity=-0.002 Sum_probs=143.9
Q ss_pred cCCCeEE-ecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccccee
Q 000085 1955 QHGKASA-SPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1955 ~~Gk~La-SsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~t 2033 (2342)
++|...+ +...++.|.+|+..+... ..+ ...+......++++++|+++++.. ++.|.+||..+......
T Consensus 33 ~~g~l~v~~~~~~~~i~~~~~~~~~~---~~~------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 33 SAGNVYVTSEGMYGRVVKLATGSTGT---TVL------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp TTCCEEEEECSSSCEEEEECC--------EEC------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CCCCEEEEccCCCCcEEEecCCCccc---ceE------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 3455455 445566788887443110 000 011122344589999999777665 88999999876544322
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
.......+.+++++++|+++++...++.|.+|+..+....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~---------------------------------------- 142 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT---------------------------------------- 142 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----------------------------------------
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----------------------------------------
Confidence 2233367899999999998888888889999965432100
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCC
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG 2191 (2342)
.....+...+.+++++++++++++...++.|.+||..++........ .....++++++|.+++.+..++.|..|+..+
T Consensus 143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 00011223567889999999888877889999999887665443222 3467899999998888887788999999887
Q ss_pred ceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2192 VLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2192 ~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.........+...+.+++++++|+.+++..
T Consensus 223 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 223 TTSTVLPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp SCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred CcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence 654433323446789999999998666553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.9e-08 Score=110.88 Aligned_cols=237 Identities=8% Similarity=-0.017 Sum_probs=164.9
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC-CccccccCCce
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l 2113 (2342)
..+...+.+++++++|+..++...++.|.+||.. +.............+..++++++|...++...+ .+..++.....
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~ 89 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGII 89 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE
Confidence 3455679999999999988877778999999988 432221122234566778888888877665533 34455544333
Q ss_pred EEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec---CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2114 HVLR--GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG---VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2114 ~~L~--GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g---h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
..+. .+...+.++++++++.+.++...++.|.+||. +++....... .....++++++|.+.+.+...+.+..|+
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 3332 34567899999999998888878899999998 6655433221 3467889999999888777778899998
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
.++.........+...+.+++++++|.+.++.. .++.|.
T Consensus 169 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-----------------------------------------~~~~i~ 207 (299)
T 2z2n_A 169 ESGDITEFKIPTPASGPVGITKGNDDALWFVEI-----------------------------------------IGNKIG 207 (299)
T ss_dssp TTCCEEEEECSSTTCCEEEEEECTTSSEEEEET-----------------------------------------TTTEEE
T ss_pred CCCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-----------------------------------------CCceEE
Confidence 855443321222456788999999998766442 135688
Q ss_pred EEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2269 FLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+||. +++........+...+.+++++++|+.+++...++.|.+|+.
T Consensus 208 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 208 RITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 8888 666433222134567899999999986666667889999995
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.9e-09 Score=137.49 Aligned_cols=216 Identities=14% Similarity=0.023 Sum_probs=139.3
Q ss_pred ecCCCeEE-----ecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCc---------
Q 000085 1954 FQHGKASA-----SPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGS--------- 2019 (2342)
Q Consensus 1954 f~~Gk~La-----SsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGs--------- 2019 (2342)
.++|+.++ +++.+..|++|+..++.... ...+ ..+. ...++|+|||+.|+.++.|..
T Consensus 129 SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~----~~~~----~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 129 SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK----VDVI----EGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS----SCCB----SCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred CCCCCEEEEEECCCCCceEEEEEEECCCCCCcC----Cccc----Cccc-ccceEEecCCCEEEEEEecCCCCCccccCC
Confidence 35677777 56666899999987743220 1111 1111 134899999999999988876
Q ss_pred ----EEEEecCCccc----ceecccCCCCeEEEEecCCCCEEEEEeCCC----ceEEEeccCCccccccccCCCCCCccc
Q 000085 2020 ----IKLLTSDGAKT----LETASGHCAPVTCLALSSDSNFLVTGSQDT----TILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2020 ----IrVWDl~tgkl----l~tL~GHt~~VtcLAfSPDG~~LaSGS~DG----TVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
|++|++.+++. +.....|...+.++.|+|||++|+.++.++ .|.+|+..++
T Consensus 200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~----------------- 262 (695)
T 2bkl_A 200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK----------------- 262 (695)
T ss_dssp GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-----------------
T ss_pred CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-----------------
Confidence 99999988763 333345667899999999999998887665 4444433221
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCeE---EEEEecC
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS---DSSDLLLHSIRRGRL---IRRLVGV 2161 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS---~DGtIrIWDLrTGkl---IrsL~gh 2161 (2342)
....+..+...+....+ +++++++++. .++.|.+||+.++.. ...+..+
T Consensus 263 ------------------------~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 317 (695)
T 2bkl_A 263 ------------------------DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED 317 (695)
T ss_dssp ------------------------SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC
T ss_pred ------------------------ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC
Confidence 12223344455556656 5566444444 258899999988753 3333332
Q ss_pred -C--cEEEEEecCCcEEEEEeCCCeEEEEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2162 -D--AHAVSLSSEGVIMTWNKLQHTLSSFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2162 -~--vssLSfSpDG~IlVwdssdGsI~I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. +..++++ ++.+++....++..++|.+ .|..+.....++.+.|..+.++|++..++...
T Consensus 318 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 318 SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence 2 4556777 6777777777887776655 46555444333467788888999998776543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-07 Score=123.99 Aligned_cols=229 Identities=9% Similarity=0.001 Sum_probs=162.7
Q ss_pred CCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc--CCccccccccCCCCC
Q 000085 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH--RAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2006 pDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~--tg~~i~t~~~~~~~~ 2083 (2342)
+.+.++++...+++|.++|..+++.+.++.... .+.++.|+|||+++++++.|+.|.+||+. +...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~----------- 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT----------- 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----------
Confidence 344567777889999999999999988876433 56799999999999999999999999985 3211
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEe----cCCCEEEEEe-CCCcEEEEECCCCeEEEEE
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVS----SDLGVVVSCS-DSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafS----PDg~lLaSGS-~DGtIrIWDLrTGklIrsL 2158 (2342)
+..+... .....++|+ |||+++++++ .+++|.++|..+.+.++++
T Consensus 233 -----------------------------v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 233 -----------------------------VAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp -----------------------------EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred -----------------------------eEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 1122221 235689999 6999887666 4699999999999999887
Q ss_pred ecC-------------CcEEEEEecCCcEEEEEe-CCCeEEEEEeCCc-eeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2159 VGV-------------DAHAVSLSSEGVIMTWNK-LQHTLSSFTLNGV-LVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2159 ~gh-------------~vssLSfSpDG~IlVwds-sdGsI~I~dlnG~-~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
... .+..+..++++..++... .+|.|.+++.... .+............++.|+|||++++++..
T Consensus 283 ~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~- 361 (567)
T 1qks_A 283 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN- 361 (567)
T ss_dssp ECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-
T ss_pred eccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC-
Confidence 532 235677788877665554 4588888876532 122112224456778999999999988752
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-C---CCCCeEEEEEecCCC
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-G---EGQDITALALNKDNT 2299 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-g---Hs~~ItsLafSPDG~ 2299 (2342)
.++.|.++|+.+++.+..+.. + |.+.-.. -++|++.
T Consensus 362 ---------------------------------------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g 401 (567)
T 1qks_A 362 ---------------------------------------ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFG 401 (567)
T ss_dssp ---------------------------------------GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTE
T ss_pred ---------------------------------------CCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCC
Confidence 146799999999998888875 2 3221111 2688855
Q ss_pred EEE-EEe-CCCcEEEEeCCC
Q 000085 2300 NLL-VST-ADKQLIVFTDPA 2317 (2342)
Q Consensus 2300 ~La-SGS-sDGsIrVWDi~s 2317 (2342)
.+. ++. .++.|.|++...
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCT
T ss_pred cEEEeCCCCCCeEEEecCCC
Confidence 554 443 568999999765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.6e-08 Score=119.83 Aligned_cols=239 Identities=10% Similarity=0.061 Sum_probs=163.0
Q ss_pred cceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCC--ceEEEeccCCccc
Q 000085 1996 IRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTS 2073 (2342)
Q Consensus 1996 I~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i 2073 (2342)
......++|+++|+++++...++.|++||..+++......... ... ++|+++++.|+.+..++ .|.+|+...+...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4456779999999988888888999999998877655544432 233 99999999999998876 6777776543110
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRG 2152 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTG 2152 (2342)
.. +..+.. +...+.+++++|++..|+.+..++.|+.||..++
T Consensus 208 ~~-------------------------------------~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 208 TR-------------------------------------IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp EE-------------------------------------EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred EE-------------------------------------eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence 00 000111 3355678999996555666777899999999877
Q ss_pred eEEEE----EecC-C-c-E-EEEEec-CCcEEEEEeCCCeEEEEEeCCceeeeecCC-------------CCCCeEEEEE
Q 000085 2153 RLIRR----LVGV-D-A-H-AVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVARAKLP-------------LSGSIGCMEI 2210 (2342)
Q Consensus 2153 klIrs----L~gh-~-v-s-sLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s~~~~-------------Hs~~ItsLaf 2210 (2342)
..... ..+. . . . .+++++ +|.+++.+...+.|+.|+.++......-.. .-.....+++
T Consensus 251 ~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 251 EVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp CEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred CEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 64322 1111 1 2 3 899999 588888888889999999887532211100 0245789999
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCC-----
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGE----- 2285 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgH----- 2285 (2342)
+++|+++++-+. .++.|+.||+.+++.. ++. ++
T Consensus 331 d~dG~lyvad~~----------------------------------------~~~~I~~~~~~~G~v~-~~~-g~~~~~g 368 (409)
T 3hrp_A 331 DEDGNFYIVDGF----------------------------------------KGYCLRKLDILDGYVS-TVA-GQVDVAS 368 (409)
T ss_dssp CTTCCEEEEETT----------------------------------------TTCEEEEEETTTTEEE-EEE-ECTTCBS
T ss_pred eCCCCEEEEeCC----------------------------------------CCCEEEEEECCCCEEE-EEe-CCCCCCC
Confidence 999986554310 1467888997777643 333 22
Q ss_pred ----------CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2286 ----------GQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2286 ----------s~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
-.....++++++|..+++-..++.|+.++.
T Consensus 369 ~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 369 QIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred cCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 135889999999887778788889988873
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.8e-08 Score=128.74 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=141.3
Q ss_pred ecCCCeEEecCCC-----ceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCc---------
Q 000085 1954 FQHGKASASPASG-----TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGS--------- 2019 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD-----~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGs--------- 2019 (2342)
.++|+.++.++++ ..|++|+..++.... ....... +..++|+|||+.|+.++.++.
T Consensus 133 SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~-------~~~~~~~---~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-------DVLERVK---FSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-------EEEEEEC---SCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc-------ccccCcc---cceEEEEeCCCEEEEEEECCcccccccccc
Confidence 3567776644332 389999976632111 1111111 234899999999998888766
Q ss_pred -------EEEEecCCcccc--e--ecccCCCCeEEEEecCCCCEEEEEeC-----CCceEEEeccCCccccccccCCCCC
Q 000085 2020 -------IKLLTSDGAKTL--E--TASGHCAPVTCLALSSDSNFLVTGSQ-----DTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2020 -------IrVWDl~tgkll--~--tL~GHt~~VtcLAfSPDG~~LaSGS~-----DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
|++|++.+++.. . ....|...+..+.|+|||++|+.++. +..|.+||+.+....
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~---------- 272 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG---------- 272 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS----------
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc----------
Confidence 999999887632 2 22335667889999999999988765 567888888751000
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCe--EEEE
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS----SDLLLHSIRRGR--LIRR 2157 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D----GtIrIWDLrTGk--lIrs 2157 (2342)
+ . + ......+..|...+.. .|+++|+.++..+.+ +.|.+||+.++. ..+.
T Consensus 273 ~-----~--~----------------~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 273 I-----T--G----------------ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp S-----C--S----------------SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred c-----C--C----------------ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 0 0 0 0012234445555554 488898887766553 369999998874 2233
Q ss_pred EecC-C---cEEEEEecCCcEEEEEeCCCe--EEEEEe-CCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2158 LVGV-D---AHAVSLSSEGVIMTWNKLQHT--LSSFTL-NGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2158 L~gh-~---vssLSfSpDG~IlVwdssdGs--I~I~dl-nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+..+ . +..+++++++.+++....++. |.+|++ +|..+..... +.+.|..+.++|++..++..
T Consensus 329 l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-EVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-CSSEEEEEECCTTCSEEEEE
T ss_pred ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC-CCceEEEEecCCCCCEEEEE
Confidence 4333 2 456788877887777777774 555666 4654444333 57788899999999877654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.91 E-value=9.7e-08 Score=119.03 Aligned_cols=277 Identities=12% Similarity=0.096 Sum_probs=179.7
Q ss_pred EEcCCCCEEEEEEc-----CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEec
Q 000085 2003 SITHDKEIITGGHV-----DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRI 2067 (2342)
Q Consensus 2003 afSpDGklLASGS~-----DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl 2067 (2342)
...|+++.+..... ++.|.++|..+++.+.++.....+ .++++|||++++.++ .+++|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34788887776655 689999999999999888765555 499999999887765 4688999999
Q ss_pred cCCccccccccCC------CCCCccccccCCCCCceeecC---CCccccccC--CceEEecCCCCCeEEEEEec-CCCEE
Q 000085 2068 HRAFTSRTGTIEP------SSGMGTPGNSIGSSTPANASA---DKSRRRRIE--GPIHVLRGHHREILCCCVSS-DLGVV 2135 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~------~~~V~svs~SpDG~~Las~s~---D~s~~~~i~--~~l~~L~GHs~~Vt~VafSP-Dg~lL 2135 (2342)
.+.....+..... ......+.++|||+.+.+... +.+..++.. +.+..+.... |..+.| ..+.+
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~~ 192 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPDTF 192 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCcee
Confidence 9977665552221 235667889999998866643 223334332 2333332211 222234 45677
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEEecC----C--c-EEEEEe-cCCcEEEEEeCCCeEEEEEeCCcee---eeec-----
Q 000085 2136 VSCSDSSDLLLHSIRR-GRLIRRLVGV----D--A-HAVSLS-SEGVIMTWNKLQHTLSSFTLNGVLV---ARAK----- 2198 (2342)
Q Consensus 2136 aSGS~DGtIrIWDLrT-GklIrsL~gh----~--v-ssLSfS-pDG~IlVwdssdGsI~I~dlnG~~L---~s~~----- 2198 (2342)
++.+.||.+.+.++.+ ++...+.... . . ....|. ++|+ ++|...+|.+++++..+... ....
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EEEEeCCCEEEEEECCCCcceeecceeccccc
Confidence 7888899999999876 6653322111 0 0 113443 6775 44566688898888865321 1110
Q ss_pred ---CC-CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC
Q 000085 2199 ---LP-LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT 2274 (2342)
Q Consensus 2199 ---~~-Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T 2274 (2342)
.+ ..+.+..++++++++.++....++.. +..+. ..+.|.+.|+.+
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~--------~~hk~-----------------------~~~~V~viD~~t 320 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDE--------WRHKT-----------------------ASRFVVVLDAKT 320 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCT--------TCTTS-----------------------CEEEEEEEETTT
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccc--------cccCC-----------------------CCCEEEEEECCC
Confidence 00 12344457788888888876421110 00000 135799999999
Q ss_pred CeEEEEEecCCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEeCCCCC
Q 000085 2275 LKVFHVLKLGEGQDITALALNKDNT-NLLVS-TADKQLIVFTDPALS 2319 (2342)
Q Consensus 2275 gk~L~tL~lgHs~~ItsLafSPDG~-~LaSG-SsDGsIrVWDi~sLs 2319 (2342)
++.+..+..++ .+.+|++++|++ .|+++ ..++.|.|+|..+..
T Consensus 321 ~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 321 GERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99999998554 688999999996 67665 458999999976653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-07 Score=113.85 Aligned_cols=226 Identities=9% Similarity=0.010 Sum_probs=156.3
Q ss_pred cCCcEEEEecCCcccceecc------cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2016 VDGSIKLLTSDGAKTLETAS------GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgkll~tL~------GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
.+++|.+||..+++....+. ........+++. +++..++...+++|.+||..+++.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~---------------- 77 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV---------------- 77 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE----------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE----------------
Confidence 47899999999988766542 122446778775 4556666667899999999885322
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-C------C
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-V------D 2162 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h------~ 2162 (2342)
..+. .......+++++++...++...++.|.+||..+++....+.. . .
T Consensus 78 ------------------------~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~ 132 (328)
T 3dsm_A 78 ------------------------GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS 132 (328)
T ss_dssp ------------------------EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred ------------------------EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence 1222 235678899999885555554899999999999998887763 2 3
Q ss_pred cEEEEEecCCcEEEEEe-CCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC
Q 000085 2163 AHAVSLSSEGVIMTWNK-LQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240 (2342)
Q Consensus 2163 vssLSfSpDG~IlVwds-sdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~ 2240 (2342)
...+++ .++.+++.+. .++.|.+++... ..+.... .......++++++|++++++..+.. .
T Consensus 133 p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~--~g~~p~~i~~~~dG~l~v~~~~~~~--~------------ 195 (328)
T 3dsm_A 133 TEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT--IGIQPTSLVMDKYNKMWTITDGGYE--G------------ 195 (328)
T ss_dssp CCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE--CSSCBCCCEECTTSEEEEEBCCBCT--T------------
T ss_pred cceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE--cCCCccceEEcCCCCEEEEECCCcc--C------------
Confidence 445666 5777777765 478999999874 3333332 2345678899999987665421100 0
Q ss_pred CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2241 ~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
..+ ....+.|.++|..+++....+..........++|+||+++|+++.. .|.+||..+..
T Consensus 196 ----~~~-------------~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 196 ----SPY-------------GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp ----CSS-------------CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred ----Ccc-------------ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 000 0014789999999999887776443457899999999999988765 89999976543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-07 Score=107.73 Aligned_cols=222 Identities=14% Similarity=0.064 Sum_probs=147.5
Q ss_pred EEEEcCCC-CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
...|++++ .++++...++.|+.||..+++. ..+ .+...+.+++++++|+++++. ++.|.+||..++.....
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~---- 88 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVL---- 88 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEE----
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEE----
Confidence 47888854 5777777889999999988765 222 245679999999999966553 56889999876432100
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEe-c-CCCCCeEEEEEecCCCEEEEEeCC---------CcEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL-R-GHHREILCCCVSSDLGVVVSCSDS---------SDLLLHS 2148 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L-~-GHs~~Vt~VafSPDg~lLaSGS~D---------GtIrIWD 2148 (2342)
... . .....+++++++++|++.++...+ ....+|.
T Consensus 89 ----------------------------------~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (297)
T 3g4e_A 89 ----------------------------------ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYS 134 (297)
T ss_dssp ----------------------------------EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred ----------------------------------EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence 000 0 012347889999999977654321 2234444
Q ss_pred CC-CCeEEEEEec-CCcEEEEEecCCcEE-EEEeCCCeEEEEEeC---Cceee-ee--cC-CCCCCeEEEEEccCCCEEE
Q 000085 2149 IR-RGRLIRRLVG-VDAHAVSLSSEGVIM-TWNKLQHTLSSFTLN---GVLVA-RA--KL-PLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2149 Lr-TGklIrsL~g-h~vssLSfSpDG~Il-VwdssdGsI~I~dln---G~~L~-s~--~~-~Hs~~ItsLafSPDGk~La 2218 (2342)
+. .++....... .....+++++||+.+ +.+..++.|..|+++ |.... .. .. .+...+..++++++|++.+
T Consensus 135 ~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv 214 (297)
T 3g4e_A 135 LFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV 214 (297)
T ss_dssp ECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE
T ss_pred EECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE
Confidence 43 2443332222 235789999999865 455667889999873 32211 11 11 1345678999999998776
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-cC
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN-KD 2297 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-PD 2297 (2342)
+.. ..+.|.+||..+++.+..+. .+...+++++|. ||
T Consensus 215 a~~-----------------------------------------~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d 252 (297)
T 3g4e_A 215 ACY-----------------------------------------NGGRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKN 252 (297)
T ss_dssp EEE-----------------------------------------TTTEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGG
T ss_pred EEc-----------------------------------------CCCEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCC
Confidence 553 14579999999999998888 555679999998 89
Q ss_pred CCEEEEEeC
Q 000085 2298 NTNLLVSTA 2306 (2342)
Q Consensus 2298 G~~LaSGSs 2306 (2342)
++.|++++.
T Consensus 253 ~~~L~vt~~ 261 (297)
T 3g4e_A 253 YSEMYVTCA 261 (297)
T ss_dssp GCEEEEEEB
T ss_pred CCEEEEEcC
Confidence 888776654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=112.82 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=158.2
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
.+..+++++.++.+.+|+..++. ..|.++. +. ...+..++++|+|++++ +.++.|+.||. +|+.+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~--~~w~~~~----~~--~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE--IVWEYPL----EK--GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE--EEEEEEC----CT--TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCe--EEEEeCC----Cc--cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEc
Confidence 46778889999999999976643 3465432 11 11234588999999888 45788999999 888888887
Q ss_pred cCC-CCeEEEEecCCCCEEEEEeC-CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCce
Q 000085 2036 GHC-APVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPI 2113 (2342)
Q Consensus 2036 GHt-~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l 2113 (2342)
.+. ..+.++.+.+||+++++.+. ++.|..+|. +++.+.+.. ....
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~-------------------------------~~~~- 119 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTE-------------------------------FETG- 119 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEE-------------------------------ECCS-
T ss_pred CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEe-------------------------------ccCC-
Confidence 653 57889999999999999887 666766664 332222110 0000
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeC-C
Q 000085 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-G 2191 (2342)
Q Consensus 2114 ~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dln-G 2191 (2342)
..++......+++.++|+++++.+.++.|.+||.. |+.+.++... ....+...++|.+++.+..++.+..++.. |
T Consensus 120 --~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 120 --IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp --CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred --CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 01122234455778999999999999999999997 9999998764 35677888999999988888889899887 7
Q ss_pred ceeeeecCC-----CCCCeEEEEEccCCCEEEEEe
Q 000085 2192 VLVARAKLP-----LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2192 ~~L~s~~~~-----Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+.+-+.... .-..+.+++..++|..+++..
T Consensus 197 ~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 197 RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 665544311 123478999999999998764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.2e-08 Score=129.23 Aligned_cols=242 Identities=12% Similarity=0.102 Sum_probs=152.5
Q ss_pred ceeEEEEEcCCCCEEEEEE-----cCCcEEEEecCCccccee-cccCCCCeEEEEecCCCCEEEEEeCCCc---------
Q 000085 1997 RSSAVVSITHDKEIITGGH-----VDGSIKLLTSDGAKTLET-ASGHCAPVTCLALSSDSNFLVTGSQDTT--------- 2061 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS-----~DGsIrVWDl~tgkll~t-L~GHt~~VtcLAfSPDG~~LaSGS~DGT--------- 2061 (2342)
..+..++|||||++||.+. .+.+|++||+.+|+.+.. +.+. ....++|+ ||+.|+.++.|..
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 3455689999999888533 335799999999986543 2211 13578999 9999999988754
Q ss_pred ----eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEecCCCEEE
Q 000085 2062 ----ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2062 ----VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLa 2136 (2342)
|.+|++.+..... ..+..... |...+..+.|+|||++++
T Consensus 206 ~~~~v~~~~lgt~~~~~------------------------------------~~v~~~~~~~~~~~~~~~~SpDg~~l~ 249 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDD------------------------------------RLVFGAIPAQHHRYVGATVTEDDRFLL 249 (693)
T ss_dssp CCCEEEEEETTSCGGGC------------------------------------EEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred CCcEEEEEECCCCcccc------------------------------------eEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence 7777766532100 01112223 445577899999999875
Q ss_pred EEe----CCCcEEEEECCCCe-EEEEEecCC-cEEEEEecCCcEEEEEe-C---CCeEEEEEeCCcee--eeecCCCCCC
Q 000085 2137 SCS----DSSDLLLHSIRRGR-LIRRLVGVD-AHAVSLSSEGVIMTWNK-L---QHTLSSFTLNGVLV--ARAKLPLSGS 2204 (2342)
Q Consensus 2137 SGS----~DGtIrIWDLrTGk-lIrsL~gh~-vssLSfSpDG~IlVwds-s---dGsI~I~dlnG~~L--~s~~~~Hs~~ 2204 (2342)
... .++.|+++|+.++. ....+..+. .....++++|..+++-. . .+.|..+++.+... -+...+|...
T Consensus 250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 329 (693)
T 3iuj_A 250 ISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ 329 (693)
T ss_dssp EEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred EEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC
Confidence 433 23589999998763 344444432 22222666665544443 2 25678888764322 0122345555
Q ss_pred eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecC
Q 000085 2205 IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLG 2284 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lg 2284 (2342)
+. .|++++++|+....+.. ...|++||+..+. ...+...
T Consensus 330 ~~--~~s~~g~~lv~~~~~~g--------------------------------------~~~l~~~d~~g~~-~~~l~~p 368 (693)
T 3iuj_A 330 VL--TVHSGSGYLFAEYMVDA--------------------------------------TARVEQFDYEGKR-VREVALP 368 (693)
T ss_dssp CE--EEEEETTEEEEEEEETT--------------------------------------EEEEEEECTTSCE-EEEECCS
T ss_pred EE--EEEEECCEEEEEEEECC--------------------------------------eeEEEEEECCCCe-eEEeecC
Confidence 54 89999999887652211 1368899987544 4555544
Q ss_pred CCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCCCC
Q 000085 2285 EGQDITALALNKDNTNLLVSTAD----KQLIVFTDPAL 2318 (2342)
Q Consensus 2285 Hs~~ItsLafSPDG~~LaSGSsD----GsIrVWDi~sL 2318 (2342)
+.+.+..+.+++++..|+....+ ++|+.||..+.
T Consensus 369 ~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 369 GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 55667888888888877765544 78999986544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.5e-08 Score=122.25 Aligned_cols=173 Identities=8% Similarity=0.009 Sum_probs=130.6
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc---------cc-eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEec
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAK---------TL-ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRI 2067 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgk---------ll-~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl 2067 (2342)
+++.+++++.+.++++|+.++ ++||++++.+ .. .....+.. |+.++| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 356699999999999999874 5669876543 11 12234666 999999 89999999 8899999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
.+... ......|...+.++.+.+. .+++++.||.|.+|
T Consensus 114 ~sl~~----------------------------------------~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~ 151 (388)
T 1xip_A 114 EELSE----------------------------------------FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSAL 151 (388)
T ss_dssp SSTTC----------------------------------------EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEE
T ss_pred hhhhc----------------------------------------cCccceeecceeeEEecCC--CEEEEECCCCEEEE
Confidence 87421 1122345556777666543 38889999999999
Q ss_pred ECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCcee--e-eec--------CCCCCCeEEEEEccCCCE
Q 000085 2148 SIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV--A-RAK--------LPLSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2148 DLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L--~-s~~--------~~Hs~~ItsLafSPDGk~ 2216 (2342)
|+.++.... + ...+.+++|||+| ++.+..+|.+++|+..+..+ . ... ..|...|.+|.|.+++.+
T Consensus 152 dl~~~~~~~-~-~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f 227 (388)
T 1xip_A 152 DLRTKSTKQ-L-AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF 227 (388)
T ss_dssp ETTTCCEEE-E-EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred EccCCcccc-c-cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeE
Confidence 999888754 2 3568999999999 56788899999999987764 2 221 136789999999999999
Q ss_pred EEEEe
Q 000085 2217 ALIGV 2221 (2342)
Q Consensus 2217 LaSGS 2221 (2342)
+++=+
T Consensus 228 lv~y~ 232 (388)
T 1xip_A 228 LAVFG 232 (388)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98754
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.1e-07 Score=102.78 Aligned_cols=253 Identities=9% Similarity=-0.030 Sum_probs=164.3
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-ec
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-TA 2034 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~-tL 2034 (2342)
+|...++...++.+.+|+.. + ....+..+ .....+..++++++|++.++...++.|..||.. ++... .+
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~-~-~~~~~~~~-------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~ 99 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQS-G-RIKEFEVP-------TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPL 99 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-S-CEEEEECS-------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CCCEEEEcCCCCeEEEECCC-C-ceEEEECC-------CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecC
Confidence 34444555455677777644 1 11111111 122345668999999988877778899999987 55432 22
Q ss_pred ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC-CccccccCCce
Q 000085 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGPI 2113 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l 2113 (2342)
..+...+.++++.++|++.++...++.|..||.. +.............+..+.+.++|+..++...+ .+..++.....
T Consensus 100 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 178 (300)
T 2qc5_A 100 PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKL 178 (300)
T ss_dssp SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcE
Confidence 3344678999999999988888778899999987 433221122233456677788888855554432 33444433333
Q ss_pred EEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE-ec--CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2114 HVL--RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL-VG--VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2114 ~~L--~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL-~g--h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
..+ ..+...+.++++++++.+.++....+.|.+||. ++...... .. .....++++++|.+.+.+..++.|..|+
T Consensus 179 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 179 EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 332 234567899999999988777777788999998 66554432 21 2367899999999877776678899998
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
.++.............+.+++++++|+..++.
T Consensus 258 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 258 NDNTIQEYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp TTSCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred CCCcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence 87644322222245678999999999876644
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.80 E-value=6e-07 Score=107.02 Aligned_cols=226 Identities=8% Similarity=0.007 Sum_probs=148.7
Q ss_pred EEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2000 AVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2000 t~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
...+|+++|+ +++++..++.|..|+. +++ ...+..+...+.+++++++|+++++...++.|.+|+.. +... ..
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~-~~-- 121 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH-LL-- 121 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE--
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE-EE--
Confidence 3478999998 7778888899999998 444 44555567789999999999977766666889999875 3210 00
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEecCCCEEEE----EeC-------------
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSSDLGVVVS----CSD------------- 2140 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSPDg~lLaS----GS~------------- 2140 (2342)
+ ....+ ....+++++++++|.+.+| |..
T Consensus 122 ------------------~----------------~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 122 ------------------V----------------GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp ------------------E----------------CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ------------------E----------------eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 0 00011 1234667888999988776 332
Q ss_pred CCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC------CeEEEEEeCCceeeee--c-CCCCCCeEEEEEc
Q 000085 2141 SSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ------HTLSSFTLNGVLVARA--K-LPLSGSIGCMEIS 2211 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd------GsI~I~dlnG~~L~s~--~-~~Hs~~ItsLafS 2211 (2342)
.+.|+.+|..+++............+++++||+.+++.... +.|..|++.+..+... . ....+.+..++++
T Consensus 168 ~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d 247 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD 247 (305)
T ss_dssp CEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC
T ss_pred CCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC
Confidence 25688888877765443322345778999999866555443 6899998864322111 0 0123445567788
Q ss_pred cCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE
Q 000085 2212 LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA 2291 (2342)
Q Consensus 2212 PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its 2291 (2342)
++|++.++. .+.|.+||. .++.+..+.. +. .+.+
T Consensus 248 ~~G~lwv~~-------------------------------------------~~gv~~~~~-~g~~~~~~~~-~~-~~~~ 281 (305)
T 3dr2_A 248 RGGWLWSSS-------------------------------------------GTGVCVFDS-DGQLLGHIPT-PG-TASN 281 (305)
T ss_dssp TTSCEEECC-------------------------------------------SSEEEEECT-TSCEEEEEEC-SS-CCCE
T ss_pred CCCCEEEec-------------------------------------------CCcEEEECC-CCCEEEEEEC-CC-ceeE
Confidence 888754421 123888988 5777777763 33 5899
Q ss_pred EEEecCCCEEEEEeCCCcEE
Q 000085 2292 LALNKDNTNLLVSTADKQLI 2311 (2342)
Q Consensus 2292 LafSPDG~~LaSGSsDGsIr 2311 (2342)
++|+++++.|+.++.++..+
T Consensus 282 ~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 282 CTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEECTTSCEEEEEETTEEEE
T ss_pred EEEeCCCCEEEEEcCCeEEE
Confidence 99999999998888764433
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-07 Score=116.23 Aligned_cols=248 Identities=8% Similarity=-0.033 Sum_probs=157.9
Q ss_pred EEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccCC-------CCeEEEEecCCCCEEEEEeC--CCce
Q 000085 2002 VSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGHC-------APVTCLALSSDSNFLVTGSQ--DTTI 2062 (2342)
Q Consensus 2002 VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GHt-------~~VtcLAfSPDG~~LaSGS~--DGTV 2062 (2342)
++++|||++++.+. .++.|.+||..+++.+.++.-.. ..-..++|+|||++++.+.. +++|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 89999999766554 36789999999998887764211 23457899999999988864 6899
Q ss_pred EEEeccCCccccccccCCC------CCCccccccCCCCCceeecCC-CccccccCCceEEecCCCCCeE-EEEEe-cCCC
Q 000085 2063 LLWRIHRAFTSRTGTIEPS------SGMGTPGNSIGSSTPANASAD-KSRRRRIEGPIHVLRGHHREIL-CCCVS-SDLG 2133 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~------~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~l~~L~GHs~~Vt-~VafS-PDg~ 2133 (2342)
.|+|+.+++...++....+ ..-..+..++||..+.+.... +... .... ..+..-...+. ...|. ++|+
T Consensus 163 sVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~--~~~~~~~~~~~~~~~~~~~dG~ 239 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHT--EVFHPEDEFLINHPAYSQKAGR 239 (386)
T ss_dssp EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEEC--CCCSCTTSCBCSCCEEETTTTE
T ss_pred EEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEE-Eeec--ceeccccccccccceeEcCCCc
Confidence 9999999876665522111 111123566777766655543 2211 1000 01111112222 23564 5675
Q ss_pred EEEEEeCCCcEEEEECCCCe--EEEEEe------------cCCcEEEEEecCCcEEEEEeC----------CCeEEEEEe
Q 000085 2134 VVVSCSDSSDLLLHSIRRGR--LIRRLV------------GVDAHAVSLSSEGVIMTWNKL----------QHTLSSFTL 2189 (2342)
Q Consensus 2134 lLaSGS~DGtIrIWDLrTGk--lIrsL~------------gh~vssLSfSpDG~IlVwdss----------dGsI~I~dl 2189 (2342)
+++ .+.+|.|++.|+.++. .+..+. ......+++++++..+..... .+.|.+++.
T Consensus 240 ~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 240 LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 544 5668999999997654 444343 123456788888876655432 246778887
Q ss_pred C-CceeeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeE
Q 000085 2190 N-GVLVARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSI 2267 (2342)
Q Consensus 2190 n-G~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsI 2267 (2342)
. ++.+.+...+ ..+++|++++||+ +|+++.. .++.|
T Consensus 319 ~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~----------------------------------------~~~~V 356 (386)
T 3sjl_D 319 KTGERLAKFEMG--HEIDSINVSQDEKPLLYALST----------------------------------------GDKTL 356 (386)
T ss_dssp TTCCEEEEEEEE--EEECEEEECSSSSCEEEEEET----------------------------------------TTTEE
T ss_pred CCCeEEEEEECC--CCcceEEECCCCCeEEEEEcC----------------------------------------CCCeE
Confidence 6 4444444333 4788999999997 6665531 16789
Q ss_pred EEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2268 CFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2268 rIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
.|+|..+++.+.++.. .+.-+.|.+++|
T Consensus 357 sViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 357 YIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp EEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred EEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 9999999999999883 334456677766
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-07 Score=118.64 Aligned_cols=288 Identities=10% Similarity=0.048 Sum_probs=182.5
Q ss_pred CCCCEEEEEEc-C----CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccCC
Q 000085 2006 HDKEIITGGHV-D----GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHRA 2070 (2342)
Q Consensus 2006 pDGklLASGS~-D----GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~tg 2070 (2342)
++++.++.... + +.|.++|..+++.+.++..-..+ .++++|||++|+.+. .+++|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45564444433 2 69999999999999888755556 899999999888776 4789999999998
Q ss_pred ccccccccC------CCCCCccccccCCCCCceeecCC---Ccccccc--CCceEEecCCCCCeEEEEEecCC-CEEEEE
Q 000085 2071 FTSRTGTIE------PSSGMGTPGNSIGSSTPANASAD---KSRRRRI--EGPIHVLRGHHREILCCCVSSDL-GVVVSC 2138 (2342)
Q Consensus 2071 ~~i~t~~~~------~~~~V~svs~SpDG~~Las~s~D---~s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg-~lLaSG 2138 (2342)
+...++... .......+.++|||+.+.+.... .+...+. .+.+..+..-. |....|++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence 766554222 12345678899999988776532 2222333 22233332211 12334443 556677
Q ss_pred eCCCcEEEEECCCCeEEEEEe----cC--C-cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec---C------C--
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLV----GV--D-AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK---L------P-- 2200 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~----gh--~-vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~---~------~-- 2200 (2342)
+.||.+.+.+..+++...... .. . ...+.++++|..+++....+.+.+++..+..+.... . .
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 788888888886666553321 10 0 123467888887777777788888887543221100 0 0
Q ss_pred -CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEE
Q 000085 2201 -LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH 2279 (2342)
Q Consensus 2201 -Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~ 2279 (2342)
.......++++++|+.+++....+. . +.. ...++.|.++|..+++.+.
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~-~-------gth-----------------------k~~s~~VsVID~~T~kvv~ 364 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRD-E-------WKH-----------------------KAASRFVVVLNAETGERIN 364 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECC-T-------TCT-----------------------TSCEEEEEEEETTTCCEEE
T ss_pred cccCCceeeEEcCCCCEEEEEecccc-c-------ccc-----------------------cCCCCEEEEEECCCCeEEE
Confidence 0112223789999888776631110 0 000 0014679999999999999
Q ss_pred EEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCChhhhhhhhhccccCC
Q 000085 2280 VLKLGEGQDITALALNKDNT-NLLVST-ADKQLIVFTDPALSLKVVDQMLKLGWEGD 2334 (2342)
Q Consensus 2280 tL~lgHs~~ItsLafSPDG~-~LaSGS-sDGsIrVWDi~sLs~k~LdQLLk~GWegD 2334 (2342)
++..+. ...+++|+|||+ .+++.. .++.|.|+|..+.. .+..+...|-.+.
T Consensus 365 ~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k--vv~tI~~vG~~P~ 417 (426)
T 3c75_H 365 KIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE--ELRSVDQLGRGPQ 417 (426)
T ss_dssp EEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC--EEEEECCCSSSCC
T ss_pred EEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC--EEEEecCCCCCCc
Confidence 998443 588999999999 888887 59999999977764 3333334444444
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-06 Score=102.16 Aligned_cols=222 Identities=13% Similarity=0.094 Sum_probs=144.7
Q ss_pred EEEEcCCC-CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDK-EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDG-klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
..+|+|++ .+++++..++.|.+||..+++.. .+. +...|.+++|+++|+++++. .+ .|.+||..++......
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~--- 125 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA--- 125 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE---
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe---
Confidence 46789975 46777778899999999877543 222 34679999999999887764 44 4888888764311000
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD------SSDLLLHSIRRGR 2153 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~------DGtIrIWDLrTGk 2153 (2342)
. ... ......+++++++++|++.++... .+.|..+| +++
T Consensus 126 -------------------~---------~~~-----~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~ 170 (326)
T 2ghs_A 126 -------------------E---------LES-----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK 170 (326)
T ss_dssp -------------------C---------SST-----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE
T ss_pred -------------------e---------CCC-----CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc
Confidence 0 000 001235788999999997765542 24566666 565
Q ss_pred EEEEEec-CCcEEEEEecCCcEEEE-EeCCCeEEEEEeC---C-ce----eeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2154 LIRRLVG-VDAHAVSLSSEGVIMTW-NKLQHTLSSFTLN---G-VL----VARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2154 lIrsL~g-h~vssLSfSpDG~IlVw-dssdGsI~I~dln---G-~~----L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
....... .....+++++||+.+++ +..++.|.+|++. | .. ...........+.+++++++|.+.++..
T Consensus 171 ~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-- 248 (326)
T 2ghs_A 171 VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-- 248 (326)
T ss_dssp EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE--
T ss_pred EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe--
Confidence 4433222 23568899999986544 4556889999974 3 21 1111111345678899999998776542
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-cCCCEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN-KDNTNLL 2302 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-PDG~~La 2302 (2342)
.++.|.+||. +++.+..+. .+...+++++|+ +++..|+
T Consensus 249 ---------------------------------------~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~ 287 (326)
T 2ghs_A 249 ---------------------------------------GEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLL 287 (326)
T ss_dssp ---------------------------------------TTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEE
T ss_pred ---------------------------------------CCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEE
Confidence 1356889998 677777776 455679999998 8988776
Q ss_pred EEeCC
Q 000085 2303 VSTAD 2307 (2342)
Q Consensus 2303 SGSsD 2307 (2342)
+++..
T Consensus 288 vt~~~ 292 (326)
T 2ghs_A 288 VTSAR 292 (326)
T ss_dssp EEEBC
T ss_pred EEecC
Confidence 66543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.5e-06 Score=102.82 Aligned_cols=233 Identities=8% Similarity=-0.080 Sum_probs=140.7
Q ss_pred EEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccC-------CCCeEEEEecCCCCEEEEEeC--CCc
Q 000085 2001 VVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGH-------CAPVTCLALSSDSNFLVTGSQ--DTT 2061 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GH-------t~~VtcLAfSPDG~~LaSGS~--DGT 2061 (2342)
.++++|||++++.+. .++.|.+||..+++.+..+.-. ...-..++|+|||++|+.++. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 489999999887775 3688999999988877665321 123457899999999998874 578
Q ss_pred eEEEeccCCccccc-cccCCCCCCccccccCCCCCc-eeecCCCcc-cccc-CCceEEec-----CCCCC-eEEEEEecC
Q 000085 2062 ILLWRIHRAFTSRT-GTIEPSSGMGTPGNSIGSSTP-ANASADKSR-RRRI-EGPIHVLR-----GHHRE-ILCCCVSSD 2131 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t-~~~~~~~~V~svs~SpDG~~L-as~s~D~s~-~~~i-~~~l~~L~-----GHs~~-Vt~VafSPD 2131 (2342)
|.++| .+++.... .... . ++.+.+++... +....++.. .++. .+...... ....+ .....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~~--~---~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP--T---CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC--c---eEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 88765544 3111 1 12223333221 111222211 1111 11110000 11112 123456666
Q ss_pred CCEEEEEeCCCcEEEEECCCCe--EEEEEe------------cCCcEEEEEecCCcEEEEEeC----------CCeEEEE
Q 000085 2132 LGVVVSCSDSSDLLLHSIRRGR--LIRRLV------------GVDAHAVSLSSEGVIMTWNKL----------QHTLSSF 2187 (2342)
Q Consensus 2132 g~lLaSGS~DGtIrIWDLrTGk--lIrsL~------------gh~vssLSfSpDG~IlVwdss----------dGsI~I~ 2187 (2342)
+..++..+.++.+.+.|+.++. .+..+. ......+++++||..+..... .+.|.++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 6555545578899999997652 333332 112345788999875544322 3578888
Q ss_pred EeCCcee-eeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCC
Q 000085 2188 TLNGVLV-ARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP 2265 (2342)
Q Consensus 2188 dlnG~~L-~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DG 2265 (2342)
+.....+ .... ......+++|+|||+ .++++.. .++
T Consensus 304 D~~t~~vv~~i~--~g~~p~~i~~s~Dg~~~l~v~~~----------------------------------------~~~ 341 (373)
T 2mad_H 304 TGLVGQTSSQIS--LGHDVDAISVAQDGGPDLYALSA----------------------------------------GTE 341 (373)
T ss_pred ECCCCEEEEEEE--CCCCcCeEEECCCCCeEEEEEcC----------------------------------------CCC
Confidence 8875443 4443 334689999999999 6665420 157
Q ss_pred eEEEEECCCCeEEEEE
Q 000085 2266 SICFLDLHTLKVFHVL 2281 (2342)
Q Consensus 2266 sIrIWDL~Tgk~L~tL 2281 (2342)
.|.|+|+.+++.+.++
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 8999999999998884
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.72 E-value=8e-07 Score=119.27 Aligned_cols=215 Identities=11% Similarity=0.091 Sum_probs=133.6
Q ss_pred cCCCeEEecCCC-----ceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCc----------
Q 000085 1955 QHGKASASPASG-----TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGS---------- 2019 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD-----~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGs---------- 2019 (2342)
++|+.++.++++ ..|++|+..++.... . ... .. ....++|+|| +.|+.++.|+.
T Consensus 172 PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~-----~--~~~--~~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 172 DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA-----D--ELK--WV-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp TTSSEEEEEEEETTCSEEEEEEEETTTCCEEE-----E--EEE--EE-ESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred CCCCEEEEEEcCCCCceEEEEEEECCCCCCCC-----c--cCC--Cc-eeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 566666654332 579999977643211 1 111 11 1134889999 98888776654
Q ss_pred ----EEEEecCCccc----ceecccCCCCeEEEEecCCCCEEEEEeCCC-----ceEEEeccCCccccccccCCCCCCcc
Q 000085 2020 ----IKLLTSDGAKT----LETASGHCAPVTCLALSSDSNFLVTGSQDT-----TILLWRIHRAFTSRTGTIEPSSGMGT 2086 (2342)
Q Consensus 2020 ----IrVWDl~tgkl----l~tL~GHt~~VtcLAfSPDG~~LaSGS~DG-----TVrVWDl~tg~~i~t~~~~~~~~V~s 2086 (2342)
|++|++.++.. +.....|...+..+.|||||++|+..+.++ .|.+||+.++..
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-------------- 306 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-------------- 306 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE--------------
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC--------------
Confidence 88999987653 222233444689999999999998877554 788888876310
Q ss_pred ccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCC--eEEEEEec
Q 000085 2087 PGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS----SDLLLHSIRRG--RLIRRLVG 2160 (2342)
Q Consensus 2087 vs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D----GtIrIWDLrTG--klIrsL~g 2160 (2342)
.....+..+...+... ++++++.++..+.+ +.|.+||+.++ .....+..
T Consensus 307 ------------------------~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 307 ------------------------GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp ------------------------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred ------------------------cccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 0012233344444444 34888888877754 45999999885 33333333
Q ss_pred CC--cEEEEEecCCcEEEEEeCCCeEEEEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2161 VD--AHAVSLSSEGVIMTWNKLQHTLSSFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2161 h~--vssLSfSpDG~IlVwdssdGsI~I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+. +..++++ ++.+++....++..++|.+ +|........++.+.|..+.++|++..++..
T Consensus 362 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 362 SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 33 3345565 5666666677777666654 4665555444456788999999998766544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-07 Score=111.34 Aligned_cols=241 Identities=10% Similarity=0.075 Sum_probs=149.2
Q ss_pred eEEEEEcCCCCEEEEEE--cCCcEEEEecCCcccc------eecccCCCCeEEEEecCCCCEEEEEeC-----CCceEEE
Q 000085 1999 SAVVSITHDKEIITGGH--VDGSIKLLTSDGAKTL------ETASGHCAPVTCLALSSDSNFLVTGSQ-----DTTILLW 2065 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS--~DGsIrVWDl~tgkll------~tL~GHt~~VtcLAfSPDG~~LaSGS~-----DGTVrVW 2065 (2342)
...++++++|+++++.. .++.++||.+++++.. ....+|...+.+++++++|+++++-+. ++.|.+|
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~ 98 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAW 98 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEE
Confidence 45589999999988864 2343566665555432 112245678999999999887776544 5789999
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEe---CC
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCS---DS 2141 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS---~D 2141 (2342)
|+.++........ ... ...+...+..+++++++..+ ++.. .+
T Consensus 99 d~~tg~~~~~~~~-------------------------------~~~---~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 99 DTLNNQLSRVIYL-------------------------------PPP---ITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp ETTTTEEEEEEEC-------------------------------CTT---TSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ECCCCeEEEEEEC-------------------------------Chh---hcccccccceEEEecCCCEEEEEcCccCCC
Confidence 9987643322100 000 01123456788888765444 5554 67
Q ss_pred CcEEEEECCCCeEEEEEecC-------------------------------CcEEEEEecCCcEEEEEeCCC-eEEEEEe
Q 000085 2142 SDLLLHSIRRGRLIRRLVGV-------------------------------DAHAVSLSSEGVIMTWNKLQH-TLSSFTL 2189 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL~gh-------------------------------~vssLSfSpDG~IlVwdssdG-sI~I~dl 2189 (2342)
+.|.+||+.+++..+.+.+| ....+++++||+.+++....+ .+..++.
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 88999999888776655331 135689999998666654443 5555443
Q ss_pred C---Cceee------e-ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2190 N---GVLVA------R-AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2190 n---G~~L~------s-~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
. ...+. . ...++......++++++|.++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~-------------------------------------- 266 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDL-------------------------------------- 266 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEG--------------------------------------
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEcc--------------------------------------
Confidence 1 00000 0 0011334566789999988777553
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.++.|.+||..+++........+...+++++|.++++.+++.+..+.+.+|.
T Consensus 267 ---~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 267 ---AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ---CCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 1467999998667644333322345689999999998888777555554443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-07 Score=114.14 Aligned_cols=268 Identities=9% Similarity=0.019 Sum_probs=170.2
Q ss_pred cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEeccCCccccccccC-C-----CC
Q 000085 2019 SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRIHRAFTSRTGTIE-P-----SS 2082 (2342)
Q Consensus 2019 sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl~tg~~i~t~~~~-~-----~~ 2082 (2342)
+|.++|..+++.+.++.....+ .++++||+++++.+. .+++|.+||..+++...++... . ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999988765566 799999999998886 4789999999998877665322 1 13
Q ss_pred CCccccccCCCCCceeecCC---Cccc--cccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCC-----
Q 000085 2083 GMGTPGNSIGSSTPANASAD---KSRR--RRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRR----- 2151 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D---~s~~--~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrT----- 2151 (2342)
....+.++|||+.+.+.... .... ++... +..+..- + |+.+.|++ ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 46788999999999877542 2233 44433 3333211 1 12233443 3456677889988889876
Q ss_pred CeEEEE----Ee-cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCce---eeeecCC---------CCCCeEEEEEccCC
Q 000085 2152 GRLIRR----LV-GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL---VARAKLP---------LSGSIGCMEISLDG 2214 (2342)
Q Consensus 2152 GklIrs----L~-gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~---L~s~~~~---------Hs~~ItsLafSPDG 2214 (2342)
++.+.+ +. +.... . ++++..++|... +.+.+.+..+.. +...... .......+++++||
T Consensus 200 ~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg 275 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp EECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred CeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence 433211 11 11112 3 677776677666 888888875421 1111100 01112237899999
Q ss_pred CEEEEEeC-C-CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEE
Q 000085 2215 HSALIGVN-S-SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITAL 2292 (2342)
Q Consensus 2215 k~LaSGS~-D-Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsL 2292 (2342)
+.++.+.. . +.. . ..++.+.++|+.+++.+.++..+. ...++
T Consensus 276 ~~lyV~~~~~~~~~---------------------------------~-~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi 319 (368)
T 1mda_H 276 DGIMILTVEHSRSC---------------------------------L-AAAENTSSVTASVGQTSGPISNGH--DSDAI 319 (368)
T ss_dssp TEEEEEEEECSSCT---------------------------------T-SCEEEEEEEESSSCCEEECCEEEE--EECEE
T ss_pred CEEEEEeccccCcc---------------------------------c-ccCCCEEEEECCCCeEEEEEECCC--CcceE
Confidence 98887642 1 100 0 001235599999999999887443 68999
Q ss_pred EEecCCCE-EEEEe-CCCcEEEEeCCCCChhhhhhhhhccccCCCc
Q 000085 2293 ALNKDNTN-LLVST-ADKQLIVFTDPALSLKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2293 afSPDG~~-LaSGS-sDGsIrVWDi~sLs~k~LdQLLk~GWegDGL 2336 (2342)
+|+|||++ +++.. .++.|.|+|..+++ +...+..|-.++|+
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~k---vv~~I~vg~~P~~i 362 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASDQ---DQSSVELDKGPESL 362 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCE---EEEECCCCSCCCEE
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCCc---EEEEEECCCCCCEE
Confidence 99999984 55666 59999999977663 33334445555554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.57 E-value=6.6e-06 Score=96.76 Aligned_cols=179 Identities=10% Similarity=0.095 Sum_probs=118.3
Q ss_pred eeEEEEEcCC-CCEEEEEEcCCcEEEEecCCccccee-ccc----CCCCeEEEEecCCCCEEEEEeCC------------
Q 000085 1998 SSAVVSITHD-KEIITGGHVDGSIKLLTSDGAKTLET-ASG----HCAPVTCLALSSDSNFLVTGSQD------------ 2059 (2342)
Q Consensus 1998 Svt~VafSpD-GklLASGS~DGsIrVWDl~tgkll~t-L~G----Ht~~VtcLAfSPDG~~LaSGS~D------------ 2059 (2342)
.+..++++++ |+++++.. ++.|.+||.+ ++.... ... +...+.+++++++|++.++.+.+
T Consensus 72 ~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~ 149 (314)
T 1pjx_A 72 IPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp CEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred CCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence 3566899999 77666554 4579999988 665433 221 22458899999999888877655
Q ss_pred ---CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEe----cCC
Q 000085 2060 ---TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVS----SDL 2132 (2342)
Q Consensus 2060 ---GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafS----PDg 2132 (2342)
+.|..|+.. + ....+..+......++|+ +++
T Consensus 150 ~~~~~l~~~~~~-g-----------------------------------------~~~~~~~~~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 150 EKFGSIYCFTTD-G-----------------------------------------QMIQVDTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp SSCEEEEEECTT-S-----------------------------------------CEEEEEEEESSEEEEEEEECTTSCE
T ss_pred CCCCeEEEECCC-C-----------------------------------------CEEEeccCCCCcceEEEecccCCCC
Confidence 233333322 1 011111223446788999 998
Q ss_pred CEE-EEEeCCCcEEEEECC-CCeE-----EEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCC
Q 000085 2133 GVV-VSCSDSSDLLLHSIR-RGRL-----IRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPL 2201 (2342)
Q Consensus 2133 ~lL-aSGS~DGtIrIWDLr-TGkl-----IrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~H 2201 (2342)
+.+ ++...++.|.+||+. ++.. ...+..+ ....++++++|.+.+.+..++.|..|+.. +..+.... .+
T Consensus 188 ~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~ 266 (314)
T 1pjx_A 188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CP 266 (314)
T ss_dssp EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CS
T ss_pred CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CC
Confidence 655 455678999999986 4542 2223222 25678999999988887778899999987 55444332 24
Q ss_pred CCCeEEEEEccCCCEEEEEe
Q 000085 2202 SGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSGS 2221 (2342)
...+.+++++++|++|++++
T Consensus 267 ~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 267 FEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp SSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeEEECCCCCEEEEEe
Confidence 57899999999999776664
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.4e-06 Score=103.99 Aligned_cols=223 Identities=10% Similarity=0.051 Sum_probs=147.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCC--cEEEEecCCcccce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDG--SIKLLTSDGAKTLE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DG--sIrVWDl~tgkll~ 2032 (2342)
++|...++...+..|++|+..++. ... +. .. ..... ++|+++++.|+++..++ .|.+|+..++....
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~-~~~------~~--~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNK-VTT------VH--PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTE-EEE------EE--ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCCCEEEEecCCCcEEEEECCCCE-EEE------ee--cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 566766776677889999865421 111 11 11 12223 88999999888888766 78888887665433
Q ss_pred ec----ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc---ccCCCCCC-c-cccccCCCCCc-eeecCC
Q 000085 2033 TA----SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---TIEPSSGM-G-TPGNSIGSSTP-ANASAD 2102 (2342)
Q Consensus 2033 tL----~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---~~~~~~~V-~-svs~SpDG~~L-as~s~D 2102 (2342)
.+ ..+...+.+++++|++..|+.+..++.|..||..++...... ........ . .++++|++..+ ++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 224566889999995555666777899999999875422110 11111111 2 78889954444 443333
Q ss_pred C-ccccccCCceEEecCCC---------------CCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC----
Q 000085 2103 K-SRRRRIEGPIHVLRGHH---------------REILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRRLVGV---- 2161 (2342)
Q Consensus 2103 ~-s~~~~i~~~l~~L~GHs---------------~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrsL~gh---- 2161 (2342)
. +.+++.......+.++. .....++|+++|.+.++-+ .++.|+.||+.+|... ++.++
T Consensus 289 ~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~ 367 (409)
T 3hrp_A 289 SSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVA 367 (409)
T ss_dssp TEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCB
T ss_pred CEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCC
Confidence 2 34454444455554443 4578999999999888888 8999999998888643 33332
Q ss_pred -------------CcEEEEEecCCcEEEEEeCCCeEEEEEe
Q 000085 2162 -------------DAHAVSLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2162 -------------~vssLSfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
....++++++|.+++.+..++.|+.+.+
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2578999999999999988888887765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-06 Score=106.59 Aligned_cols=236 Identities=9% Similarity=-0.023 Sum_probs=151.3
Q ss_pred EEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccC-------CCCeEEEEecCCCCEEEEEeC--CCc
Q 000085 2001 VVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGH-------CAPVTCLALSSDSNFLVTGSQ--DTT 2061 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GH-------t~~VtcLAfSPDG~~LaSGS~--DGT 2061 (2342)
-++++|||++++.+. .++.|.++|..+++.+.++.-. ...-..++|+|||++|+.+.. +++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 489999999776665 4779999999999888776421 123457899999999998874 578
Q ss_pred eEEEeccCCccccccccCCC------CCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCe-EEEEEecCCCE
Q 000085 2062 ILLWRIHRAFTSRTGTIEPS------SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREI-LCCCVSSDLGV 2134 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~------~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~V-t~VafSPDg~l 2134 (2342)
|.+.|+.+.+...++..... .....+.++++|..+.+....+....... ..+.....++ ..+.|.+++..
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT---EVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---CCCSCTTSCBCSCCEECTTTCE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---eeeccCCCceeeEeeecCCCCE
Confidence 99999999876655422111 11223445566665544442222111000 1111111121 23567888888
Q ss_pred EEEEeCCCcEEEEECCCCeEE--EEEe------------cCCcEEEEEecCCcE-EEEEeC---------CCeEEEEEeC
Q 000085 2135 VVSCSDSSDLLLHSIRRGRLI--RRLV------------GVDAHAVSLSSEGVI-MTWNKL---------QHTLSSFTLN 2190 (2342)
Q Consensus 2135 LaSGS~DGtIrIWDLrTGklI--rsL~------------gh~vssLSfSpDG~I-lVwdss---------dGsI~I~dln 2190 (2342)
++..+..|.|.+.|+..+... ..+. ......+++++||.. +++... .+.+.+++..
T Consensus 279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 777788899999998765422 2221 111234789999764 444321 2468888886
Q ss_pred C-ceeeeecCCCCCCeEEEEEccCCC-EEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEE
Q 000085 2191 G-VLVARAKLPLSGSIGCMEISLDGH-SALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSIC 2268 (2342)
Q Consensus 2191 G-~~L~s~~~~Hs~~ItsLafSPDGk-~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIr 2268 (2342)
. +.+.+... .....+++|+|||+ ++++... .++.|.
T Consensus 359 T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~----------------------------------------~s~~Vs 396 (426)
T 3c75_H 359 TGERINKIEL--GHEIDSINVSQDAEPLLYALSA----------------------------------------GTQTLH 396 (426)
T ss_dssp TCCEEEEEEE--EEEECEEEECCSSSCEEEEEET----------------------------------------TTTEEE
T ss_pred CCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcC----------------------------------------CCCeEE
Confidence 4 44444332 23588999999999 7876631 167899
Q ss_pred EEECCCCeEEEEE
Q 000085 2269 FLDLHTLKVFHVL 2281 (2342)
Q Consensus 2269 IWDL~Tgk~L~tL 2281 (2342)
|+|+.+++.+.++
T Consensus 397 VID~~t~kvv~tI 409 (426)
T 3c75_H 397 IYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEe
Confidence 9999999999987
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-05 Score=95.02 Aligned_cols=211 Identities=7% Similarity=-0.037 Sum_probs=135.9
Q ss_pred CeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-
Q 000085 1958 KASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG- 2036 (2342)
Q Consensus 1958 k~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G- 2036 (2342)
..+++...++.|..|+..++. ...+.. . ..+.+++++++|+++++. ++.|.+||.++++.......
T Consensus 26 ~l~~~d~~~~~i~~~d~~~~~-~~~~~~-------~---~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 26 SLLFVDIPAKKVCRWDSFTKQ-VQRVTM-------D---APVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp EEEEEETTTTEEEEEETTTCC-EEEEEC-------S---SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC
T ss_pred EEEEEECCCCEEEEEECCCCc-EEEEeC-------C---CceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC
Confidence 344555556778888765421 111111 1 235679999999966654 67899999988764332221
Q ss_pred ---CCCCeEEEEecCCCCEEEEEeCC---------CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc
Q 000085 2037 ---HCAPVTCLALSSDSNFLVTGSQD---------TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS 2104 (2342)
Q Consensus 2037 ---Ht~~VtcLAfSPDG~~LaSGS~D---------GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s 2104 (2342)
....+.+++++|+|+++++...+ ....||.+... +
T Consensus 93 ~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----------------------g----------- 139 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----------------------H----------- 139 (297)
T ss_dssp TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT----------------------S-----------
T ss_pred CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC----------------------C-----------
Confidence 12357899999999977765332 22344444321 0
Q ss_pred cccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEEC--CCCeEE--EEE---ec--CCcEEEEEecCCcE
Q 000085 2105 RRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSI--RRGRLI--RRL---VG--VDAHAVSLSSEGVI 2174 (2342)
Q Consensus 2105 ~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDL--rTGklI--rsL---~g--h~vssLSfSpDG~I 2174 (2342)
....+..+....+.++|+|+++.+ ++.+.++.|.+||+ .+|... +.+ .. .....++++++|.+
T Consensus 140 -------~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 140 -------HVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp -------CEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred -------CEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence 011112223346789999999866 55666889999997 566542 222 21 12567899999998
Q ss_pred EEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEc-cCCCEEEEEeC
Q 000085 2175 MTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEIS-LDGHSALIGVN 2222 (2342)
Q Consensus 2175 lVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafS-PDGk~LaSGS~ 2222 (2342)
.+.....+.|..|+.. |+.+..... +...+++++|. ||++.|++++.
T Consensus 213 wva~~~~~~v~~~d~~tG~~~~~i~~-p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 213 WVACYNGGRVIRLDPVTGKRLQTVKL-PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEETTTEEEEECTTTCCEEEEEEC-SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCEEEEEcCCCceEEEEEEC-CCCCceEEEEeCCCCCEEEEEcC
Confidence 8888778889999987 766655443 45679999998 89888877763
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.4e-06 Score=111.55 Aligned_cols=152 Identities=9% Similarity=-0.014 Sum_probs=89.8
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceecccC-C----CCeEEEEecCCCCEEEEEeC------CCceEEEeccCCccccc
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGH-C----APVTCLALSSDSNFLVTGSQ------DTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~GH-t----~~VtcLAfSPDG~~LaSGS~------DGTVrVWDl~tg~~i~t 2075 (2342)
++..|+.++.|+.|..+|..+|+.+..+..+ . ..+++--.. .+..++.++. ++.|..+|..+++.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 4567888889999999999999988776654 1 122211111 2345555543 79999999999876654
Q ss_pred cccCCC-------------------------------CCCccccccCCCCCceeecCCC--------------------c
Q 000085 2076 GTIEPS-------------------------------SGMGTPGNSIGSSTPANASADK--------------------S 2104 (2342)
Q Consensus 2076 ~~~~~~-------------------------------~~V~svs~SpDG~~Las~s~D~--------------------s 2104 (2342)
...... .....+++++++..+..+..+. +
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 421111 0112345556666665544332 1
Q ss_pred cccc--cCCceEEecC--CC-------CCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2105 RRRR--IEGPIHVLRG--HH-------REILCCCVSSDL---GVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2105 ~~~~--i~~~l~~L~G--Hs-------~~Vt~VafSPDg---~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
..++ .++.+-.++. |. .....+....+| ..++.++.+|.++++|..+|+.+..+.
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 1111 1222222221 21 122333344467 688999999999999999999987765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.8e-06 Score=106.20 Aligned_cols=182 Identities=10% Similarity=0.073 Sum_probs=124.5
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH 2119 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH 2119 (2342)
.+..+++++...++++|+.|+ +++|++......... ..+. ..+.. ...+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~--------------~~~~---------------~~~~~-~~~l 87 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS--------------DSTP---------------LTFKW-EKEI 87 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS--------------SSCC---------------CCCSE-EEEC
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc--------------cccc---------------ccceE-EeeC
Confidence 689999999999999999985 455998763210000 0000 01111 1235
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeee
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARA 2197 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~ 2197 (2342)
.. |+.++| |+.+++++ .+|.|++||+++.........+. +..+.+.+. -++....+|.+.+|++.......
T Consensus 88 p~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 88 PD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp TT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-
T ss_pred CC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-
Confidence 56 999999 89999988 88999999998765544444443 333333332 25555778999999987433322
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeE
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
+...|+|++|||+| ++.|.. ||++++|+...+++
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~-----------------------------------------dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLK-----------------------------------------DRSFQSFAWRNGEM 194 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEET-----------------------------------------TSCEEEEEEETTEE
T ss_pred ---ccCCceEEEEcCCc--eEEEEc-----------------------------------------CCcEEEEcCCCccc
Confidence 45689999999999 455542 67799998888775
Q ss_pred --EEEEec--------CCCCCeEEEEEecCCCEEEEEe
Q 000085 2278 --FHVLKL--------GEGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2278 --L~tL~l--------gHs~~ItsLafSPDG~~LaSGS 2305 (2342)
..++.. +|...|.+|.|.+++.+|++-+
T Consensus 195 ~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 195 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 556621 3778899999999999988743
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-05 Score=107.66 Aligned_cols=216 Identities=12% Similarity=0.129 Sum_probs=135.3
Q ss_pred cCCCeEE-----ecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCc----------
Q 000085 1955 QHGKASA-----SPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGS---------- 2019 (2342)
Q Consensus 1955 ~~Gk~La-----SsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGs---------- 2019 (2342)
++|+.++ +++....|++|+..++.... .. .. .+. ...++|+ ||+.|+.++.+..
T Consensus 138 pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-----~~--~~--~~k-~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 138 RDGRILAYSLSLAGSDWREIHLMDVESKQPLE-----TP--LK--DVK-FSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp TTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-----EE--EE--EEE-SCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred CCCCEEEEEEecCCCceEEEEEEECCCCCCCc-----cc--cC--Cce-eccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 4566665 34444789999977643111 11 11 110 1247899 9998888887743
Q ss_pred ---EEEEecCCccc----ceeccc-CCCCeEEEEecCCCCEEEEEeC----CCceEEEeccCCccccccccCCCCCCccc
Q 000085 2020 ---IKLLTSDGAKT----LETASG-HCAPVTCLALSSDSNFLVTGSQ----DTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087 (2342)
Q Consensus 2020 ---IrVWDl~tgkl----l~tL~G-Ht~~VtcLAfSPDG~~LaSGS~----DGTVrVWDl~tg~~i~t~~~~~~~~V~sv 2087 (2342)
|++|++.++.. +..... |...+..+.|+|||++|+..+. ++.|.+||+.++.
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~---------------- 270 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN---------------- 270 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT----------------
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC----------------
Confidence 99999987653 223333 5556789999999998855432 2478888876631
Q ss_pred cccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCC---CcEEEEECCCCeE--EEEEecC
Q 000085 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDS---SDLLLHSIRRGRL--IRRLVGV 2161 (2342)
Q Consensus 2088 s~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~D---GtIrIWDLrTGkl--IrsL~gh 2161 (2342)
.....+..+....... |+++++.++ ++..| +.|..+|+.++.. .+.+..+
T Consensus 271 -----------------------~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 271 -----------------------APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp -----------------------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred -----------------------CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 0122334455555554 566666554 44443 6799999988754 3345444
Q ss_pred CcEEEEEecCCcEEEEEeCC-C--eEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2162 DAHAVSLSSEGVIMTWNKLQ-H--TLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2162 ~vssLSfSpDG~IlVwdssd-G--sI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
....+.++++|..+++.... + .|.+|+++|........+..+.+..+.+++++..++...
T Consensus 327 ~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ 389 (693)
T 3iuj_A 327 RQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGF 389 (693)
T ss_dssp CSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEE
T ss_pred CCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEe
Confidence 32222999999887776543 3 678888887766665555666777888888887766553
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.3e-05 Score=93.35 Aligned_cols=209 Identities=11% Similarity=0.055 Sum_probs=131.8
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc---
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS--- 2035 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~--- 2035 (2342)
.+++...++.|..|+..++. ...+ .. . ..+.+++++++|+++++. ++.|.+||..+++......
T Consensus 63 l~~~d~~~~~i~~~d~~~~~-~~~~------~~-~---~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGR-KTVH------AL-P---FMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTE-EEEE------EC-S---SCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSST
T ss_pred EEEEECCCCEEEEEECCCCc-EEEE------EC-C---CcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeCCC
Confidence 34444456677888755421 1111 11 1 235668999999977764 3459999998876533221
Q ss_pred cC-CCCeEEEEecCCCCEEEEEeCC----CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2036 GH-CAPVTCLALSSDSNFLVTGSQD----TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2036 GH-t~~VtcLAfSPDG~~LaSGS~D----GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
++ ...+.+++++|+|+++++...+ +...||.+.++.
T Consensus 130 ~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~--------------------------------------- 170 (326)
T 2ghs_A 130 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK--------------------------------------- 170 (326)
T ss_dssp TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---------------------------------------
T ss_pred CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc---------------------------------------
Confidence 11 2458899999999977765432 234444443211
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECC--CC-e-----EEEEEec--CCcEEEEEecCCcEEEEEe
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIR--RG-R-----LIRRLVG--VDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLr--TG-k-----lIrsL~g--h~vssLSfSpDG~IlVwds 2179 (2342)
...+..+......++|+++++.++ +.+.++.|.+||+. +| . .+..+.. .....++++++|.+.+...
T Consensus 171 --~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 171 --VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp --EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred --EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence 001111223467899999998764 44567899999986 66 3 2222221 1246788999999887776
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEc-cCCCEEEEEeC
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS-LDGHSALIGVN 2222 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS-PDGk~LaSGS~ 2222 (2342)
..+.|..|+.++..+..... +...+++++|+ +++..|++++.
T Consensus 249 ~~~~v~~~d~~g~~~~~i~~-~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 249 GEGAVDRYDTDGNHIARYEV-PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp TTTEEEEECTTCCEEEEEEC-SCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCEEEEECCCCCEEEEEEC-CCCCcEEEEEecCCCCEEEEEec
Confidence 67889999987766554433 45579999998 89888876653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-05 Score=97.77 Aligned_cols=215 Identities=7% Similarity=-0.069 Sum_probs=134.8
Q ss_pred CcceeEEEEEcCCCCEEEEEEc-----CCcEEEEecCCcccceeccc------CCCCeEEEEecCCC-CEEEEEe---CC
Q 000085 1995 GIRSSAVVSITHDKEIITGGHV-----DGSIKLLTSDGAKTLETASG------HCAPVTCLALSSDS-NFLVTGS---QD 2059 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~-----DGsIrVWDl~tgkll~tL~G------Ht~~VtcLAfSPDG-~~LaSGS---~D 2059 (2342)
+...+..++++++|+++++... ++.|.+||+.+++.+.++.. +...+..+++++++ ..+++.+ .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 4456777999999997776644 57899999999887665542 23456889999864 4456655 68
Q ss_pred CceEEEeccCCccccccccCCCCC-CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSG-MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~-V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSG 2138 (2342)
+.|.+||+.++...+... .+... .....+.++|..+.+...++.. .. ....+..++|+|+++.++.+
T Consensus 145 ~~i~v~d~~~g~~~r~~~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~--------~~---~~~~~~gia~s~dg~~ly~~ 212 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQ-GYPGIAPEDIDLVIDGVPVQIGQPDGTV--------IR---PHLGVNGIVLDAENEWLYLS 212 (343)
T ss_dssp CEEEEEETTTCCEEEECT-TCTTTSCCSCCCEETTEECBEECTTSCE--------EC---CCCCEEEEEECTTSCEEEEE
T ss_pred CeEEEEECCCCCEEEEec-CCCcccccccceeECCEEEEeccCCCce--------ec---eecccceeEeccCCCEEEEE
Confidence 899999998765433221 11000 0012233344333322222111 00 11346889999999988888
Q ss_pred eCCC-cEEEEECC---CCe--------EEEEEe-cCCcEEEEEecCCcEEEEEeCCCeEEEEEe-CCceeeeecCCCCCC
Q 000085 2139 SDSS-DLLLHSIR---RGR--------LIRRLV-GVDAHAVSLSSEGVIMTWNKLQHTLSSFTL-NGVLVARAKLPLSGS 2204 (2342)
Q Consensus 2139 S~DG-tIrIWDLr---TGk--------lIrsL~-gh~vssLSfSpDG~IlVwdssdGsI~I~dl-nG~~L~s~~~~Hs~~ 2204 (2342)
..++ .+..++.. .+. .+..+. ......++++++|.+++.+...+.|.+|+. +|........++...
T Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~ 292 (343)
T 2qe8_A 213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW 292 (343)
T ss_dssp ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence 7766 45444432 111 011111 112456899999999999988999999998 675332222223456
Q ss_pred eEEEEEccCCCEEEEEe
Q 000085 2205 IGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS 2221 (2342)
+++++|.++|+++++.+
T Consensus 293 p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 293 TDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEEEECTTSCEEEEEC
T ss_pred CCeeEECCCCcEEEEeC
Confidence 89999999998888764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-05 Score=104.64 Aligned_cols=292 Identities=9% Similarity=-0.026 Sum_probs=152.9
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceeccc--CCCCeEEEEecC---CCCEEEEEe-----CCCceEEEeccCCcccccc
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASG--HCAPVTCLALSS---DSNFLVTGS-----QDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~G--Ht~~VtcLAfSP---DG~~LaSGS-----~DGTVrVWDl~tg~~i~t~ 2076 (2342)
++..|+.++.|+.|+.+|..+|+.+-.+.. +......+..+| ++..++..+ .|+.|..||..+++.+...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 355778888999999999999998765543 211111111222 454444332 3789999999998765544
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCc-------------
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSD------------- 2143 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGt------------- 2143 (2342)
......... .++..........+.+ ..|.. ..++......+++++++++++.++.++.
T Consensus 200 ~~~~~~p~~--~~~~~~~~~~~~~~~g-~~w~~------~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd 270 (689)
T 1yiq_A 200 YTVPGDPKL--PPEGKGMEIAAKTWFG-DAYVE------QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGD 270 (689)
T ss_dssp ESSCCCTTS--CCCSHHHHHHHTTCCS-STHHH------HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSC
T ss_pred cccCCCccc--ccccccccccccccCC-ceeee------cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCC
Confidence 211100000 0000000000000000 00100 0122222346788898899998888764
Q ss_pred ------EEEEECCCCeEEEEEec--CC---------cEEEEEecCCc---EEEEEeCCCeEEEEEeC-CceeeeecCCCC
Q 000085 2144 ------LLLHSIRRGRLIRRLVG--VD---------AHAVSLSSEGV---IMTWNKLQHTLSSFTLN-GVLVARAKLPLS 2202 (2342)
Q Consensus 2144 ------IrIWDLrTGklIrsL~g--h~---------vssLSfSpDG~---IlVwdssdGsI~I~dln-G~~L~s~~~~Hs 2202 (2342)
|..+|..+|+.+..+.. +. .....+..+|+ .++....+|.+++++.. |+.+........
T Consensus 271 ~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 350 (689)
T 1yiq_A 271 NLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ 350 (689)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred ceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc
Confidence 99999999999988764 21 11111122443 34444455555555543 333311111100
Q ss_pred --------------------------------------CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2203 --------------------------------------GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2203 --------------------------------------~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
..-..++|+|+...+++++.+.... ++......
T Consensus 351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~------~~~~~~~~--- 421 (689)
T 1yiq_A 351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAY------YEHIPEAP--- 421 (689)
T ss_dssp SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEE------EECCSSCC---
T ss_pred ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEecccccee------eeeccccc---
Confidence 0112378888888888776432210 01000000
Q ss_pred ccccc--ccccccC---CC--------C-ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 000085 2245 EDFDL--ASDQSVD---NN--------R-FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQL 2310 (2342)
Q Consensus 2245 iaFsp--d~~~s~s---s~--------~-ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsI 2310 (2342)
.+.. ....... .. + ....+|.|..||+.+++.+..+. . ..++..-.++..+..+++|+.||.|
T Consensus 422 -~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~-~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 422 -KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-Y-VTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp -CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-E-SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred -cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-C-CCCccCccceECCCEEEEECCCCcE
Confidence 0000 0000000 00 0 00025889999999999998887 2 3344445667788899999999999
Q ss_pred EEEeCCCCC
Q 000085 2311 IVFTDPALS 2319 (2342)
Q Consensus 2311 rVWDi~sLs 2319 (2342)
++||..+.+
T Consensus 499 ~a~D~~tG~ 507 (689)
T 1yiq_A 499 IAYAADTGE 507 (689)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 999976653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-05 Score=93.25 Aligned_cols=213 Identities=13% Similarity=0.154 Sum_probs=130.8
Q ss_pred eeecCCC-eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc
Q 000085 1952 FLFQHGK-ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1952 flf~~Gk-~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl 2030 (2342)
...++|. .+++...++.+..|+. ++. ... +.... ..+..++++++|+++++...++.|.+|+.+ ++.
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~------~~~~~---~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDV------LLDAT---AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEET-TSC-EEE------EEESC---SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeC-CCC-EEE------EeCCC---CccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence 3345555 4556666677888864 211 111 11111 234568999999988877667889999986 543
Q ss_pred ceec---ccC-CCCeEEEEecCCCCEEEE----EeCC-------------CceEEEeccCCccccccccCCCCCCccccc
Q 000085 2031 LETA---SGH-CAPVTCLALSSDSNFLVT----GSQD-------------TTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2031 l~tL---~GH-t~~VtcLAfSPDG~~LaS----GS~D-------------GTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
.... .+. ...+.+++++++|++.+| |..+ +.|..||..++
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g------------------- 179 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS------------------- 179 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-------------------
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-------------------
Confidence 2211 111 234678999999988887 3211 12222222221
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCeEE--EEEe--
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS------SDLLLHSIRRGRLI--RRLV-- 2159 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D------GtIrIWDLrTGklI--rsL~-- 2159 (2342)
.+..+. +....+.++|+||++.++.+..+ +.|.+||+..+... +.+.
T Consensus 180 ----------------------~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 236 (305)
T 3dr2_A 180 ----------------------PLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV 236 (305)
T ss_dssp ----------------------CCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC
T ss_pred ----------------------cEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC
Confidence 011111 22356789999999977776655 78999998765421 1121
Q ss_pred -cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2160 -GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2160 -gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
......++++++|++.+ ...+.|.+|+.+|+.+.....+ ..+.+++|+++++.|..++.
T Consensus 237 ~~~~pdgi~~d~~G~lwv--~~~~gv~~~~~~g~~~~~~~~~--~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 237 PDGLPDGFCVDRGGWLWS--SSGTGVCVFDSDGQLLGHIPTP--GTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp SSSCCCSEEECTTSCEEE--CCSSEEEEECTTSCEEEEEECS--SCCCEEEECTTSCEEEEEET
T ss_pred CCCCCCeEEECCCCCEEE--ecCCcEEEECCCCCEEEEEECC--CceeEEEEeCCCCEEEEEcC
Confidence 11234688999999544 3355699999988877665543 35899999999988887763
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.9e-05 Score=91.87 Aligned_cols=258 Identities=11% Similarity=0.026 Sum_probs=149.5
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
..+.+.++|.+++ |+.+ |..+|. +++.+..+..+........+. +..|+.++.++.+..+|.. +....... .
T Consensus 63 ~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~ 134 (330)
T 3hxj_A 63 CRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK-T 134 (330)
T ss_dssp ECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-C
T ss_pred cceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-C
Confidence 3466677776554 3333 888886 666655554433333334443 5567788889999999987 54433221 1
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccC-CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
....+..+...+++...+.....+...++.. .....+..+...+.++.+.+++.+.+ ++ +.|..+| .+++.+..+
T Consensus 135 ~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~ 210 (330)
T 3hxj_A 135 KKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF 210 (330)
T ss_dssp SSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE
T ss_pred CCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE
Confidence 2223444455555654443332334333332 23334444455667777777777554 44 7888999 777777666
Q ss_pred ecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccc
Q 000085 2159 VGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQG 2236 (2342)
Q Consensus 2159 ~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~ 2236 (2342)
... .+..++..++|.+.+.. .++.+..++.++..+..... ....+.++.+.++|...+ |+
T Consensus 211 ~~~~~~~~~~~~~~~g~l~v~t-~~~gl~~~~~~g~~~~~~~~-~~~~~~~~~~~~~g~l~v-~t--------------- 272 (330)
T 3hxj_A 211 YAGYWTVTRPAISEDGTIYVTS-LDGHLYAINPDGTEKWRFKT-GKRIESSPVIGNTDTIYF-GS--------------- 272 (330)
T ss_dssp CCSSCCCSCCEECTTSCEEEEE-TTTEEEEECTTSCEEEEEEC-SSCCCSCCEECTTSCEEE-EC---------------
T ss_pred ccCCcceeceEECCCCeEEEEc-CCCeEEEECCCCCEeEEeeC-CCCccccceEcCCCeEEE-ec---------------
Confidence 543 25566777888765543 45667777665655433221 222233444544554433 32
Q ss_pred cCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2237 LNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2237 l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
.+|.|..+|. +++.+..+. .....+.++...++|. |..|+.+|.+++...+
T Consensus 273 --------------------------~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 273 --------------------------YDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp --------------------------TTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred --------------------------CCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 2456888885 677777666 3345677788878886 6779999999998843
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00019 Score=87.60 Aligned_cols=298 Identities=10% Similarity=0.094 Sum_probs=150.8
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceec---c--ccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAF---A--SSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~---h--s~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
+..+..++.++.+..|+..++. ..|.+...... + ...+. .....++..++.++.++.|..+|..+|+.+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK--EIWSVSLAEKDGWFSKEPALLS----GGVTVSGGHVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--EEEEEECCC---CCSCCCCCEE----EEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCeEEEEEccCCc--eeeeecCccccccccccCcccc----cCceEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence 3444455556677888876643 34433211000 0 11111 112224556777888999999999999887
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCC----CccccccCCCCCceeecCCC-ccc
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG----MGTPGNSIGSSTPANASADK-SRR 2106 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~----V~svs~SpDG~~Las~s~D~-s~~ 2106 (2342)
.....+.......... +..++.++.++.|..+|..+++............ ....... +..+..+..++ ...
T Consensus 127 W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 127 WQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp EEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred EEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 6655443222222222 4578888999999999998886554432111100 0111111 22222222221 111
Q ss_pred ccc--CCceEEecCCC--C-----C---e-EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCc
Q 000085 2107 RRI--EGPIHVLRGHH--R-----E---I-LCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGV 2173 (2342)
Q Consensus 2107 ~~i--~~~l~~L~GHs--~-----~---V-t~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~ 2173 (2342)
++. ++.+-...... . . + ....+ .+..++.++.+|.+..+|..+|+.+..........+... ++
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~-~~- 278 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVD-GN- 278 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEE-TT-
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEE-CC-
Confidence 211 11111111100 0 0 0 00011 246677788889999999999988876654332222221 22
Q ss_pred EEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccc
Q 000085 2174 IMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASD 2252 (2342)
Q Consensus 2174 IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~ 2252 (2342)
.++....++.+..++.. |+.+-.........+....+. +..+++++
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~------------------------------- 325 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGD------------------------------- 325 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEEC-------------------------------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEe-------------------------------
Confidence 23333345556666653 322221110111112222221 33444442
Q ss_pred cccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEe
Q 000085 2253 QSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITA-LALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2253 ~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~Its-LafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
.+|.|+++|..+++.+...... ...+.+ ... .+..|++++.||.|+.|+
T Consensus 326 ----------~~g~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 326 ----------SEGYLHWINVEDGRFVAQQKVD-SSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ----------TTSEEEEEETTTCCEEEEEECC-TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ----------CCCeEEEEECCCCcEEEEEecC-CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 2678999999999998887732 223322 222 245788999999999987
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.8e-05 Score=94.23 Aligned_cols=225 Identities=15% Similarity=0.131 Sum_probs=144.7
Q ss_pred EEc--CCCCE-EEEEEcCCcEEEEecCCc----ccceecc------cC-CCCeEEEEecCCCCEEEEEeCC------Cce
Q 000085 2003 SIT--HDKEI-ITGGHVDGSIKLLTSDGA----KTLETAS------GH-CAPVTCLALSSDSNFLVTGSQD------TTI 2062 (2342)
Q Consensus 2003 afS--pDGkl-LASGS~DGsIrVWDl~tg----kll~tL~------GH-t~~VtcLAfSPDG~~LaSGS~D------GTV 2062 (2342)
.++ .++++ ++.|..++.|.|+|+.+. +...++. .+ ...-..+..+|+| .++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 445 77774 555668899999998754 4455552 01 1123456778999 77776665 788
Q ss_pred EEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe---
Q 000085 2063 LLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS--- 2139 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS--- 2139 (2342)
.+.|..+.+.+.+.. .. .+-..--..+-|+|+++.+++..
T Consensus 167 ~vlD~~T~~v~~~~~-------------------------------~~------~~~~~~~Yd~~~~p~~~~mvsS~wg~ 209 (462)
T 2ece_A 167 LMLDHYSFEPLGKWE-------------------------------ID------RGDQYLAYDFWWNLPNEVLVSSEWAV 209 (462)
T ss_dssp EEECTTTCCEEEECC-------------------------------SB------CTTCCCCCCEEEETTTTEEEECBCCC
T ss_pred EEEECCCCeEEEEEc-------------------------------cC------CCCccccceEEECCCCCEEEEccCcC
Confidence 888888754333220 00 00011122466788888888774
Q ss_pred ----------------CCCcEEEEECCCCeEEEEEecC----CcEEEEE--ecCCcEEEEEe------CCCeEEEEEeCC
Q 000085 2140 ----------------DSSDLLLHSIRRGRLIRRLVGV----DAHAVSL--SSEGVIMTWNK------LQHTLSSFTLNG 2191 (2342)
Q Consensus 2140 ----------------~DGtIrIWDLrTGklIrsL~gh----~vssLSf--SpDG~IlVwds------sdGsI~I~dlnG 2191 (2342)
.+.+|.+||+.+++.++++... ....+.| +|+|++..... .+++|.+|..++
T Consensus 210 p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 210 PNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp HHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 3689999999999999988763 1344445 99998765554 455676655432
Q ss_pred ceeeeec---CC---C--------------CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccc
Q 000085 2192 VLVARAK---LP---L--------------SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLAS 2251 (2342)
Q Consensus 2192 ~~L~s~~---~~---H--------------s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~ 2251 (2342)
....... .+ . ......+.+|+||++|.++..
T Consensus 290 g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr----------------------------- 340 (462)
T 2ece_A 290 GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW----------------------------- 340 (462)
T ss_dssp TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-----------------------------
T ss_pred CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-----------------------------
Confidence 1111000 00 0 245788999999999998742
Q ss_pred ccccCCCCccCCCCeEEEEECC---CCeEEEEEecCCC-------------CCeEEEEEecCCCEEEEEe
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLH---TLKVFHVLKLGEG-------------QDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~---Tgk~L~tL~lgHs-------------~~ItsLafSPDG~~LaSGS 2305 (2342)
..+.|.++|+. +.+.+..+..+-. +.-..++++|||++|+++.
T Consensus 341 -----------g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 341 -----------GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp -----------TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred -----------CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 14679999985 3567777764411 1358899999999999988
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-05 Score=97.49 Aligned_cols=242 Identities=10% Similarity=-0.024 Sum_probs=145.7
Q ss_pred EEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccC-------CCCeEEEEecCCCCEEEEEeC--CCc
Q 000085 2001 VVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGH-------CAPVTCLALSSDSNFLVTGSQ--DTT 2061 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GH-------t~~VtcLAfSPDG~~LaSGS~--DGT 2061 (2342)
.+.++|||+.++.+. .+++|.+||..+++.+.++..+ ......++++|||++++.+.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 489999999777765 3789999999999998887543 123567899999999998875 467
Q ss_pred eEE--EeccCCccccccccCCC------CCCccccccCCCCCceeecCC-----CccccccCCceEEecCCCCCeEEEEE
Q 000085 2062 ILL--WRIHRAFTSRTGTIEPS------SGMGTPGNSIGSSTPANASAD-----KSRRRRIEGPIHVLRGHHREILCCCV 2128 (2342)
Q Consensus 2062 VrV--WDl~tg~~i~t~~~~~~------~~V~svs~SpDG~~Las~s~D-----~s~~~~i~~~l~~L~GHs~~Vt~Vaf 2128 (2342)
|.+ +|..+ ........+ .....+..++++..+...... +...+... . .+.-...+. .
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~--~i~vg~~P~---~- 218 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-G--AQNCSSQAA---Q- 218 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-T--TSCBCSCCE---E-
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-e--eeeCCCCcc---c-
Confidence 888 99877 222211100 111123344444444333221 11111000 0 011112233 3
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC--eEEEEEec------------CCcEEEEEecCCcEEEEEeC---------CCeEE
Q 000085 2129 SSDLGVVVSCSDSSDLLLHSIRRG--RLIRRLVG------------VDAHAVSLSSEGVIMTWNKL---------QHTLS 2185 (2342)
Q Consensus 2129 SPDg~lLaSGS~DGtIrIWDLrTG--klIrsL~g------------h~vssLSfSpDG~IlVwdss---------dGsI~ 2185 (2342)
++++..++..+. +.|.+.|+.++ +.+..+.. .....+++++||+.++.... .+.+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 666666666666 99999998654 23333321 11223789999886655432 23566
Q ss_pred EEEeCCc-eeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2186 SFTLNGV-LVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2186 I~dlnG~-~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
+++.... .+..... .....+++|++||++++.+.. ..+
T Consensus 298 ViD~~t~~vv~~i~v--g~~p~gi~~s~Dg~~l~va~~---------------------------------------~~~ 336 (368)
T 1mda_H 298 SVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANS---------------------------------------AGT 336 (368)
T ss_dssp EEESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEE---------------------------------------TTT
T ss_pred EEECCCCeEEEEEEC--CCCcceEEECCCCCEEEEEcc---------------------------------------CCC
Confidence 8888643 3433322 236889999999986554431 015
Q ss_pred CeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2265 PSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
+.|.|+|+.+++.+.++..+ .....+++.+
T Consensus 337 ~~VsVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 337 EVLDIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp TEEEEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred CeEEEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 78999999999999998833 3345565544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00014 Score=97.10 Aligned_cols=301 Identities=9% Similarity=-0.002 Sum_probs=163.4
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCCCC----------e-EEEEecCCCCEEEEEeCCCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHCAP----------V-TCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~----------V-tcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..|+.++.++.|+.+|..+|+.+-.+...... + ..+++ ++..|+.++.|+.|..+|..+++.+...
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 445666677899999999999887655432210 1 12233 4678889999999999999998766554
Q ss_pred ccC-CCCCCccccccC--CCCCceeec----------------CCCccccccCCceEE----------------ec----
Q 000085 2077 TIE-PSSGMGTPGNSI--GSSTPANAS----------------ADKSRRRRIEGPIHV----------------LR---- 2117 (2342)
Q Consensus 2077 ~~~-~~~~V~svs~Sp--DG~~Las~s----------------~D~s~~~~i~~~l~~----------------L~---- 2117 (2342)
... .......+..+| .+..+.++. .++..+|.....-.. ..
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 222 100000111111 122222221 122222322110000 00
Q ss_pred -----CCCCCeEEEEEecCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEEec--CC---------
Q 000085 2118 -----GHHREILCCCVSSDLGVVVSCSDSS-------------------DLLLHSIRRGRLIRRLVG--VD--------- 2162 (2342)
Q Consensus 2118 -----GHs~~Vt~VafSPDg~lLaSGS~DG-------------------tIrIWDLrTGklIrsL~g--h~--------- 2162 (2342)
++......+++++++.+++.++.++ +|..+|..+|+.+..+.. +.
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 1111223578889999999887764 599999999999888764 21
Q ss_pred cEEEEEecCC---cEEEEEeCCCeEEEEEeC-CceeeeecCCCCC----------------------------------C
Q 000085 2163 AHAVSLSSEG---VIMTWNKLQHTLSSFTLN-GVLVARAKLPLSG----------------------------------S 2204 (2342)
Q Consensus 2163 vssLSfSpDG---~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~----------------------------------~ 2204 (2342)
...+....+| ..++....+|.+++++.. |+.+......... .
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~ 394 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence 2233333456 455555566666666653 4433322211000 0
Q ss_pred eEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCC--cccccccc--cccc----CCCCccCCCCeEEEEECCCCe
Q 000085 2205 IGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSG--TEDFDLAS--DQSV----DNNRFDFPSPSICFLDLHTLK 2276 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~--~iaFspd~--~~s~----ss~~ias~DGsIrIWDL~Tgk 2276 (2342)
-..++++|++.+++++..+...+ ++.......+ ...+.... .... ......-..|.|..||+.+++
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVN------LMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCE------EEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred CCCceEcCCCCEEEEeChhccee------eecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 12578899888888775332100 0000000000 00000000 0000 000001134899999999999
Q ss_pred EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2277 VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2277 ~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.+..+. +..++.+..++.++..+++++.||.+++||..+.
T Consensus 469 ~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 469 AAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred EEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 998887 4445666667788889999999999999997655
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.3e-05 Score=100.03 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=32.3
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
.||.++.||..+|+.+..+..++.....-+.|..+|+..++
T Consensus 494 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 494 ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 48999999999999999998665544455778889875554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.8e-06 Score=106.64 Aligned_cols=146 Identities=8% Similarity=0.031 Sum_probs=74.9
Q ss_pred CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCc-
Q 000085 2007 DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMG- 2085 (2342)
Q Consensus 2007 DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~- 2085 (2342)
++..+++|+.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|++|..||..+++............+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567888999999999999999999887776 56666666778888888899999999999887654332111000000
Q ss_pred cccccCCCCCceeecCCC-cccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2086 TPGNSIGSSTPANASADK-SRRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2086 svs~SpDG~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
..... ++..++++..++ ...++. ++.+..+..+. ...++|++..+++++.|+.|+.||.++|+.+..+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 11111 223333333222 222322 22333333332 23456788899999999999999999998765553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00099 Score=79.87 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=145.0
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc--------------------cCCCCeEEEEecC-CCCEEEEEeCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS--------------------GHCAPVTCLALSS-DSNFLVTGSQD 2059 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~--------------------GHt~~VtcLAfSP-DG~~LaSGS~D 2059 (2342)
.++++++|+++.++..++.|..|+..+++... +. .....+.++++.+ +++ |+.+...
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~ 100 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCY 100 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETT
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECC
Confidence 47889999977788889999999987654321 11 0113578999997 555 4445444
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC-CCCCeEEEEEec-CCCEEEE
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG-HHREILCCCVSS-DLGVVVS 2137 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G-Hs~~Vt~VafSP-Dg~lLaS 2137 (2342)
+.|..+|..++.. ..+ +. ...+ .......+++.+ +|.+.++
T Consensus 101 ~~i~~~d~~~g~~-~~~--------------------~~----------------~~~~~~~~~p~~i~~d~~~G~l~v~ 143 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-TQL--------------------AT----------------SVDGVPFKWLYAVTVDQRTGIVYFT 143 (322)
T ss_dssp TEEEEECTTCEEC-EEE--------------------ES----------------EETTEECSCEEEEEECTTTCCEEEE
T ss_pred CCEEEEeCCCCEE-EEe--------------------cc----------------cCCCCcccccceEEEecCCCEEEEE
Confidence 5577777654311 000 00 0000 112456788888 8877665
Q ss_pred EeC-----------------CCcEEEEECCCCeEEEEEec-CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCce---ee
Q 000085 2138 CSD-----------------SSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVL---VA 2195 (2342)
Q Consensus 2138 GS~-----------------DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~---L~ 2195 (2342)
-.. +|.|..+|..+++....... .....++++++|. +++.+...+.|..|++.+.. ..
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~ 223 (322)
T 2fp8_A 144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE 223 (322)
T ss_dssp ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE
T ss_pred CCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc
Confidence 432 37799999887765433222 3356789999997 55666777899999987521 11
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
... ...+ ...++++++|++.++....... . +. ....+.|..+|. .+
T Consensus 224 ~~~-~~~g-P~gi~~d~~G~l~va~~~~~~~--------~-------------~~----------~~~~~~v~~~d~-~G 269 (322)
T 2fp8_A 224 VLV-KIPN-PGNIKRNADGHFWVSSSEELDG--------N-------------MH----------GRVDPKGIKFDE-FG 269 (322)
T ss_dssp EEE-ECSS-EEEEEECTTSCEEEEEEEETTS--------S-------------TT----------SCEEEEEEEECT-TS
T ss_pred eEE-eCCC-CCCeEECCCCCEEEEecCcccc--------c-------------cc----------CCCccEEEEECC-CC
Confidence 110 1223 7889999999877655311110 0 00 001345777776 46
Q ss_pred eEEEEEecCC---CCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 000085 2276 KVFHVLKLGE---GQDITALALNKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2276 k~L~tL~lgH---s~~ItsLafSPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.+..+.... -..++++++ .+++.+++....+.|.+++.+
T Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 270 NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 6666665322 234677776 466555555678899999854
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.96 E-value=8e-05 Score=96.92 Aligned_cols=265 Identities=11% Similarity=0.036 Sum_probs=167.2
Q ss_pred CCCCEEEEEEc-CCcEEEEecCCcccceeccc-CCCCeEEEEe-c-CCCCEEEEEe------------------CCCceE
Q 000085 2006 HDKEIITGGHV-DGSIKLLTSDGAKTLETASG-HCAPVTCLAL-S-SDSNFLVTGS------------------QDTTIL 2063 (2342)
Q Consensus 2006 pDGklLASGS~-DGsIrVWDl~tgkll~tL~G-Ht~~VtcLAf-S-PDG~~LaSGS------------------~DGTVr 2063 (2342)
+||+++..... ++.|.+.|+++.++.+.+.- .......+++ + |++++++.++ .++++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38886666554 55699999999998774432 1234778887 5 9999999885 245788
Q ss_pred EEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEE------EEecCCCEEEE
Q 000085 2064 LWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCC------CVSSDLGVVVS 2137 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~V------afSPDg~lLaS 2137 (2342)
+.|..+.+...+...+. ....+.++++|+.+.+.+.+......+..... .-.+.|.-+ .+.++|+....
T Consensus 179 vID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~---~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA---AEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC---CSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred EEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccc---cccceEEEeeccceeEeccCCCeeEE
Confidence 99998866555543222 34567788999988777765321100000000 000001000 12245554432
Q ss_pred EeCCCcEEEEECCC--CeE-EEEEe-cCCcEEEEEecCCcEEEEE-eCCCeEEEEEeCCc-------------eeeeecC
Q 000085 2138 CSDSSDLLLHSIRR--GRL-IRRLV-GVDAHAVSLSSEGVIMTWN-KLQHTLSSFTLNGV-------------LVARAKL 2199 (2342)
Q Consensus 2138 GS~DGtIrIWDLrT--Gkl-IrsL~-gh~vssLSfSpDG~IlVwd-ssdGsI~I~dlnG~-------------~L~s~~~ 2199 (2342)
+.|.|.|.++ ++. ++.+. +.....+.++|||++++.. ..+..+.+|++... .... .
T Consensus 254 ----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~--v 327 (595)
T 1fwx_A 254 ----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE--P 327 (595)
T ss_dssp ----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC--C
T ss_pred ----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE--c
Confidence 5699999998 655 66664 3567889999999966555 55688999998743 1222 2
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-----
Q 000085 2200 PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT----- 2274 (2342)
Q Consensus 2200 ~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T----- 2274 (2342)
.-......++|+++| ++.+... -|++|.+||+.+
T Consensus 328 ~vG~gP~h~aF~~dG-~aY~t~~----------------------------------------ldsqV~kwdi~~a~~~~ 366 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRG-NAYTSLF----------------------------------------LDSQVVKWNIEDAIRAY 366 (595)
T ss_dssp BCCSCEEEEEECTTS-EEEEEET----------------------------------------TTTEEEEEEHHHHHHHH
T ss_pred CCCCCcceEEECCCC-eEEEEEe----------------------------------------cCCcEEEEEhhHhhhhh
Confidence 234578889999999 7765531 267899999877
Q ss_pred -----CeEEEEEecCCCCCe-----EEEEEecCCCEEEEEeC---CCcE----------EEEeCCCCChhhh
Q 000085 2275 -----LKVFHVLKLGEGQDI-----TALALNKDNTNLLVSTA---DKQL----------IVFTDPALSLKVV 2323 (2342)
Q Consensus 2275 -----gk~L~tL~lgHs~~I-----tsLafSPDG~~LaSGSs---DGsI----------rVWDi~sLs~k~L 2323 (2342)
.+.+.++. .|-.+- .++.++|||++|++... |+-+ .++|+.+..++.+
T Consensus 367 ~g~~~~~vi~kid-V~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 367 AGEKVDPIKDKLD-VHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp HTCSCCCEEEEEE-CSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred cccccceeEEEee-cccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence 67788887 443321 22346899999998853 4432 7788754443333
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.9e-05 Score=88.71 Aligned_cols=254 Identities=10% Similarity=-0.023 Sum_probs=145.5
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
..+..+|. |..|+.++.|..|| .+++.+.....+...+.++...++|. |+.++.+ +..+|. ++......... .
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~-~ 97 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTK-K 97 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECC-C
Confidence 44555665 44556788899999 88887666555555677888877765 4445544 888886 44433322111 1
Q ss_pred CCCccccccCCCCCceeec-CCCccccccC-CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2082 SGMGTPGNSIGSSTPANAS-ADKSRRRRIE-GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s-~D~s~~~~i~-~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
......... ++. +..+. ..+...++.. ........+...+.++.+.+++. ++.++.++.|..+|.. |+.+..+.
T Consensus 98 ~~~~~~~~~-~~~-l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 98 AIVSDFTIF-EDI-LYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp ---CCEEEE-TTE-EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE
T ss_pred CcccCceEE-CCE-EEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe
Confidence 111112222 333 33333 2333333332 23333344445566667766676 5567788999999998 87776665
Q ss_pred cC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2160 GV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2160 gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
.. ....+...++|.+.+.. +.+..++.+|..+-... .....+.++.+.++|...+.. .
T Consensus 174 ~~~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~~g~l~v~t-~--------------- 233 (330)
T 3hxj_A 174 TNDAITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFY-AGYWTVTRPAISEDGTIYVTS-L--------------- 233 (330)
T ss_dssp CSSCCCSCCEECTTCCEEEES---SSEEEECTTSCEEEEEC-CSSCCCSCCEECTTSCEEEEE-T---------------
T ss_pred cCCCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEc-cCCcceeceEECCCCeEEEEc-C---------------
Confidence 43 24556667788765543 67777775554443322 234567788888887665533 1
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
++.|..+|. +++.+..+. .....+.++.+.+++ .|.+++.+|.|..++.
T Consensus 234 --------------------------~~gl~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 234 --------------------------DGHLYAINP-DGTEKWRFK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp --------------------------TTEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred --------------------------CCeEEEECC-CCCEeEEee-CCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 344566653 455555554 223334445555555 4677888888888874
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0048 Score=71.76 Aligned_cols=224 Identities=10% Similarity=-0.022 Sum_probs=134.0
Q ss_pred EEEEEEcCCcEEEEecCCcccc-----eecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTL-----ETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSG 2083 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll-----~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~ 2083 (2342)
+|..+. .+.|+.+++++.... ..+......+.+++|++++..|+ +-..++.|.+++......
T Consensus 3 ~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----------- 70 (267)
T 1npe_A 3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----------- 70 (267)
T ss_dssp EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----------
T ss_pred EEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-----------
Confidence 344444 347888888765321 11222234578999999765554 555577888888765310
Q ss_pred CccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEec--
Q 000085 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVG-- 2160 (2342)
Q Consensus 2084 V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~g-- 2160 (2342)
...+........++++++++..+ ++....+.|.++++........+..
T Consensus 71 -----------------------------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~ 121 (267)
T 1npe_A 71 -----------------------------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121 (267)
T ss_dssp -----------------------------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred -----------------------------EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC
Confidence 00011112456889999876555 4555678999999864332222221
Q ss_pred CCcEEEEEecC-CcEEEEEeC--CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccccc
Q 000085 2161 VDAHAVSLSSE-GVIMTWNKL--QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGL 2237 (2342)
Q Consensus 2161 h~vssLSfSpD-G~IlVwdss--dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l 2237 (2342)
.....++++++ |.+++.+.. .+.|..++++|..........-.....+++++++.+|+.+..
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--------------- 186 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--------------- 186 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---------------
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---------------
Confidence 34678999996 455555543 468888888875433222123356789999999888876641
Q ss_pred CCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2238 NSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2238 ~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
..+.|.++|.........+. + ......+++. +..|+++. ..+.|.+++..
T Consensus 187 -------------------------~~~~I~~~~~~g~~~~~~~~-~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 187 -------------------------GTHRAECLNPAQPGRRKVLE-G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp -------------------------TTTEEEEEETTEEEEEEEEE-C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred -------------------------CCCEEEEEecCCCceEEEec-C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 13578888887654433333 2 2334566654 45555554 56899999965
Q ss_pred CC
Q 000085 2317 AL 2318 (2342)
Q Consensus 2317 sL 2318 (2342)
+.
T Consensus 238 ~g 239 (267)
T 1npe_A 238 IS 239 (267)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0053 Score=71.39 Aligned_cols=217 Identities=9% Similarity=-0.040 Sum_probs=135.5
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
...+++++++. ++++-..++.|.+++.+++.....+........++++++++..|+ +-...+.|.+++...... .
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~-- 114 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-R-- 114 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E--
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-E--
Confidence 45689999765 555555678999999987654333333334678999999765554 445567888887754210 0
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCe
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD---SSDLLLHSIRRGR 2153 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~---DGtIrIWDLrTGk 2153 (2342)
............++++|++..++.+.. .+.|..+++.. .
T Consensus 115 -------------------------------------~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~ 156 (267)
T 1npe_A 115 -------------------------------------VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T 156 (267)
T ss_dssp -------------------------------------EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C
T ss_pred -------------------------------------EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C
Confidence 000111134578999997666554443 36888888753 3
Q ss_pred EEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCC
Q 000085 2154 LIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNG 2229 (2342)
Q Consensus 2154 lIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~ 2229 (2342)
....+.. .....+++++++. +++.+...+.|..++..+........ .......+++. +..++.+..
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~------- 226 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDW------- 226 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEET-------
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEEC-------
Confidence 3333321 2367899999765 55556667899999987654332221 22334556543 455554431
Q ss_pred CcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC
Q 000085 2230 SYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT 2299 (2342)
Q Consensus 2230 i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~ 2299 (2342)
..+.|.++|..+++.+..+..+.......+++.|++.
T Consensus 227 ---------------------------------~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 ---------------------------------KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ---------------------------------TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ---------------------------------CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 1467999999999999888744333578888888875
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0016 Score=79.43 Aligned_cols=257 Identities=12% Similarity=0.077 Sum_probs=136.9
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccC---------CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGH---------CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GH---------t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+..+++++.++.|..+|..+|+.+...... ...+.+. ...++..++.++.|+.|..+|..+++.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 456777778899999999999877554432 1223222 122466888899999999999998876544321
Q ss_pred CCCCCCccccccCCCCCceeecCCC-cccccc--CCceEEecCCCCC-----eEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADK-SRRRRI--EGPIHVLRGHHRE-----ILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~~~l~~L~GHs~~-----Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
.. .+.......++ .+.++..++ ...++. ++.+-........ .....+. +..++.++.+|.+..+|..
T Consensus 132 ~~--~~~~~p~~~~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 132 AG--EALSRPVVSDG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp SS--CCCSCCEEETT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred CC--ceEcCCEEECC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence 11 11111111122 333333222 222221 1122122111110 0111222 4568888899999999999
Q ss_pred CCeEEEEEecCCc------------EEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEE
Q 000085 2151 RGRLIRRLVGVDA------------HAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2151 TGklIrsL~gh~v------------ssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~L 2217 (2342)
+|+.+........ .....-.++. ++....++.+..++.. |+.+-... .....++... +..+
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-v~~~~~~g~l~~~d~~tG~~~w~~~---~~~~~~~~~~--~~~l 280 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGV-VFALAYNGNLTALDLRSGQIMWKRE---LGSVNDFIVD--GNRI 280 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCEEETTE-EEEECTTSCEEEEETTTCCEEEEEC---CCCEEEEEEE--TTEE
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcEEECCE-EEEEecCcEEEEEECCCCcEEeecc---CCCCCCceEE--CCEE
Confidence 9998877653210 0000001222 2333345556666653 33322211 1223333332 4455
Q ss_pred EEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2218 LIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2218 aSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
++++ .++.|..+|..+++.+..........+..... .
T Consensus 281 ~~~~-----------------------------------------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~ 317 (376)
T 3q7m_A 281 YLVD-----------------------------------------QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--Y 317 (376)
T ss_dssp EEEE-----------------------------------------TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--E
T ss_pred EEEc-----------------------------------------CCCeEEEEECCCCcEEEeecccCCCcccCCEE--E
Confidence 5443 15678999999999887765222222333333 2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCC
Q 000085 2298 NTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2298 G~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
+..|++++.+|.|.++|..+..
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEeCCCeEEEEECCCCc
Confidence 5678899999999999966553
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00094 Score=89.08 Aligned_cols=289 Identities=11% Similarity=0.029 Sum_probs=148.4
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceecccCC----CCeEE-EEecCCCCEEEEEeC------CCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASGHC----APVTC-LALSSDSNFLVTGSQ------DTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~GHt----~~Vtc-LAfSPDG~~LaSGS~------DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..|+.++.|+.|..+|..+|+.+-.+.... ..+++ ..+. ++ .++.++. ++.|..+|..+++.+...
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4567778889999999999999876654321 11111 1111 34 4555443 589999999998766554
Q ss_pred ccCCCCCCccccccCCCCCc--eeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCc-----------
Q 000085 2077 TIEPSSGMGTPGNSIGSSTP--ANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSD----------- 2143 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~L--as~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGt----------- 2143 (2342)
.......... +. ...+ ....+++...|. ..++......++++++..+++.++.++.
T Consensus 195 ~~~~~~p~~~--~~--~~~~~~~~~~~~g~~~w~-------~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~ 263 (668)
T 1kv9_A 195 YTVPGDPALP--YE--HPELREAAKTWQGDQYWK-------LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGG 263 (668)
T ss_dssp ESSCCCTTSC--CS--SHHHHHHHTTCCSSCHHH-------HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred cccCCCCCcc--cc--ccccccccccCCccceee-------eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence 2110000000 00 0000 000001111111 1122233345788888888888887763
Q ss_pred --------EEEEECCCCeEEEEEec--CC---------cEEEEEecCCc---EEEEEeCCCeEEEEEeC-CceeeeecCC
Q 000085 2144 --------LLLHSIRRGRLIRRLVG--VD---------AHAVSLSSEGV---IMTWNKLQHTLSSFTLN-GVLVARAKLP 2200 (2342)
Q Consensus 2144 --------IrIWDLrTGklIrsL~g--h~---------vssLSfSpDG~---IlVwdssdGsI~I~dln-G~~L~s~~~~ 2200 (2342)
|..+|..+|+.+..+.. |. .....+..+|+ +++....+|.+++++.. |+.+......
T Consensus 264 gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~ 343 (668)
T 1kv9_A 264 GDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG 343 (668)
T ss_dssp CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred CCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccc
Confidence 99999999999888764 21 11122223554 34444555666666543 4333211110
Q ss_pred CCC-----------------------------------CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcc
Q 000085 2201 LSG-----------------------------------SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTE 2245 (2342)
Q Consensus 2201 Hs~-----------------------------------~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~i 2245 (2342)
... .-..++++|+...+++...+...........|... ...
T Consensus 344 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~----~~~ 419 (668)
T 1kv9_A 344 KVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR----KAF 419 (668)
T ss_dssp CCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC----SSC
T ss_pred ccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc----ccc
Confidence 000 01125677776666654422110000000000000 000
Q ss_pred ccccccccccCCCC--ccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2246 DFDLASDQSVDNNR--FDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2246 aFspd~~~s~ss~~--ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
+..... ..... ....+|.|..||+.+++.+..... ..++....+...+..+++|+.||.|++||..+.
T Consensus 420 -~~g~~~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 420 -NTAAGF--ADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp -CCSSCG--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred -ccCccc--cccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 000000 00000 112358999999999999888772 334444455667888999999999999997654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.011 Score=79.84 Aligned_cols=218 Identities=9% Similarity=0.019 Sum_probs=133.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-------CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-------HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-------Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.+.++...++|.+.+ |+.++-+.+||..+++....... ....|.++...++|.+.+ |+.+ -|.+||..++
T Consensus 216 ~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~ 292 (795)
T 4a2l_A 216 QIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTD 292 (795)
T ss_dssp CEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTT
T ss_pred eeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCC
Confidence 345677777777555 44455588999877654332211 235799999998887555 4445 5888887765
Q ss_pred ccccccc------cCCCCCCccccccCCCCCceeecCCCccccccC-CceEEecC-------CCCCeEEEEEecCCCEEE
Q 000085 2071 FTSRTGT------IEPSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPIHVLRG-------HHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2071 ~~i~t~~------~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l~~L~G-------Hs~~Vt~VafSPDg~lLa 2136 (2342)
....... ......+.++....+|...+....++...++.. .....+.. ....|.+++..++|. +.
T Consensus 293 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lW 371 (795)
T 4a2l_A 293 SFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LW 371 (795)
T ss_dssp EEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EE
T ss_pred eEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EE
Confidence 4322110 112245666667777776665555555444322 11222211 245699999888877 45
Q ss_pred EEeCCCcEEEEECCCCeEEEEE----------ecCCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecC----CC
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRL----------VGVDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKL----PL 2201 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL----------~gh~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~----~H 2201 (2342)
.|+.++-|..||..++...... ....+..++..++|. +.+ +..++-+..|+..+........ ..
T Consensus 372 iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~~Gl~~~d~~~~~~~~~~~~~~~l~ 450 (795)
T 4a2l_A 372 IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTHAGGLSILHRNSGQVENFNQRNSQLV 450 (795)
T ss_dssp EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE-EETTTEEEEEETTTCCEEEECTTTSCCS
T ss_pred EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeCcCceeEEeCCCCcEEEeecCCCCcC
Confidence 5788888999999887654432 123467778888888 444 4455668888876544333221 13
Q ss_pred CCCeEEEEEccCCCEEEEE
Q 000085 2202 SGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSG 2220 (2342)
...|.++...++|.+.+..
T Consensus 451 ~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 451 NENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp CSCEEEEEECSSSCEEEEE
T ss_pred CCeeEEEEECCCCCEEEEe
Confidence 4679999998888876643
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.6e-06 Score=100.61 Aligned_cols=200 Identities=11% Similarity=0.002 Sum_probs=99.3
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
++..++.++.|+.+..|+..+|. ..|.+.. ..+.+ ..+..++.++++++.||.|+.||..+|+.+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~--~~W~~~~------~~~~s---~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS--IKWTLKE------DPVLQ---VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC--EEEEEEC------CCSCC---CC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--EEEEecC------CCcee---cceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 45666777788899999977643 3454422 12222 3345677788888899999999999998876665
Q ss_pred cCCCC-eEE-EEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCC-cccccc--C
Q 000085 2036 GHCAP-VTC-LALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADK-SRRRRI--E 2110 (2342)
Q Consensus 2036 GHt~~-Vtc-LAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~-s~~~~i--~ 2110 (2342)
.+... +.+ ..+. ++..|++|+.|++|..||..+++......... ....+|++..++++..++ ...++. +
T Consensus 77 ~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 77 FTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp CCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSS
T ss_pred ccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCC
Confidence 44221 111 1111 45678889999999999999987665542211 123345666666555443 222332 2
Q ss_pred CceEEecCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcE
Q 000085 2111 GPIHVLRGHHREILCCCVSSDL---GVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVI 2174 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg---~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~I 2174 (2342)
+.+..+..+. ....+++.+. ..++.++.||.|+.||.++|+.+.++.... ....+++.+|.+
T Consensus 151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 2222221110 1122233332 567788999999999999999988776433 233445566654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0023 Score=80.99 Aligned_cols=225 Identities=14% Similarity=0.098 Sum_probs=136.1
Q ss_pred CCCe-EEecCCCceEEEecCCCCCCCccccccccee----ccccCcceeEEEEEcCCCCEEEEEEcC------CcEEEEe
Q 000085 1956 HGKA-SASPASGTFLRMFKGPGGSGADEWHFPRALA----FASSGIRSSAVVSITHDKEIITGGHVD------GSIKLLT 2024 (2342)
Q Consensus 1956 ~Gk~-LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls----~hs~gI~Svt~VafSpDGklLASGS~D------GsIrVWD 2024 (2342)
+++. ++++..+..|.+++..+.... -...+.+. ....+...-..+.++|+| ++++...+ |.|.++|
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~--p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPRE--PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTS--CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCC--ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 3444 455667788999986541110 01111110 001122233457789999 66665555 7899999
Q ss_pred cCCcccceecccCCC---CeEEEEecCCCCEEEEEe-------------------CCCceEEEeccCCccccccccCCCC
Q 000085 2025 SDGAKTLETASGHCA---PVTCLALSSDSNFLVTGS-------------------QDTTILLWRIHRAFTSRTGTIEPSS 2082 (2342)
Q Consensus 2025 l~tgkll~tL~GHt~---~VtcLAfSPDG~~LaSGS-------------------~DGTVrVWDl~tg~~i~t~~~~~~~ 2082 (2342)
..+++.+.++....+ --..+-|+|+++.++|.. .+.+|.+||+.+++...++.
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~----- 245 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT----- 245 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE-----
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe-----
Confidence 999999888763222 123477899999999885 36899999998753222110
Q ss_pred CCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEE--ecCCCEEEEEe------CCCcEEEEECCCCeE
Q 000085 2083 GMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCV--SSDLGVVVSCS------DSSDLLLHSIRRGRL 2154 (2342)
Q Consensus 2083 ~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Vaf--SPDg~lLaSGS------~DGtIrIWDLrTGkl 2154 (2342)
+.........+.| +|++++++.++ .+++|.+|....|..
T Consensus 246 ---------------------------------vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~ 292 (462)
T 2ece_A 246 ---------------------------------LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW 292 (462)
T ss_dssp ---------------------------------SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE
T ss_pred ---------------------------------cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce
Confidence 0001122334445 88988877666 466887776655532
Q ss_pred --EEEE--e------------------cCCcEEEEEecCCcEEEEEe-CCCeEEEEEeC----CceeeeecCC-------
Q 000085 2155 --IRRL--V------------------GVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLN----GVLVARAKLP------- 2200 (2342)
Q Consensus 2155 --IrsL--~------------------gh~vssLSfSpDG~IlVwds-sdGsI~I~dln----G~~L~s~~~~------- 2200 (2342)
.+.+ . +.....+.+|+||+++..+. ..+.|.+|++. .+.+.....+
T Consensus 293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~ 372 (462)
T 2ece_A 293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRAD 372 (462)
T ss_dssp EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBC
T ss_pred eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccc
Confidence 1211 1 12246788999999776654 45789999984 2333333222
Q ss_pred C------CCCeEEEEEccCCCEEEEEe
Q 000085 2201 L------SGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2201 H------s~~ItsLafSPDGk~LaSGS 2221 (2342)
| .+....++++|||++|+++.
T Consensus 373 ~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 373 HPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 01368899999999999873
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.031 Score=75.51 Aligned_cols=215 Identities=9% Similarity=0.030 Sum_probs=135.3
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc--------CCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG--------HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G--------Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
.+.+++..++|++.+ |+.++-|..|+..+++....... ....|.+++..++|+.|..|+.++-+.+||..+
T Consensus 358 ~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 358 VVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp SEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred eeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 466788888887554 66777899999887654332211 246799999988888677788878899999887
Q ss_pred Cccccccc---cCCCCCCccccccCCCCCceeecCCCccccccCCc-eEEec-------CCCCCeEEEEEecCCCEEEEE
Q 000085 2070 AFTSRTGT---IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP-IHVLR-------GHHREILCCCVSSDLGVVVSC 2138 (2342)
Q Consensus 2070 g~~i~t~~---~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~-l~~L~-------GHs~~Vt~VafSPDg~lLaSG 2138 (2342)
+...+... ......+.++...++|...+... ++...++.... ...+. -+...|.++...++|.+.+..
T Consensus 437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 437 GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence 54322111 01233456666666676555544 55544443221 22221 123678999998888866544
Q ss_pred eCCCcEEEEECCCCeEEEEEec---------CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC---CCCCeE
Q 000085 2139 SDSSDLLLHSIRRGRLIRRLVG---------VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP---LSGSIG 2206 (2342)
Q Consensus 2139 S~DGtIrIWDLrTGklIrsL~g---------h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~---Hs~~It 2206 (2342)
. +.+..||..+++. .+.. ..+..+..+++|.+.+... +-+..|+............ ....|.
T Consensus 516 -~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~Gl~~~d~~~~~~~~~~~~~gl~~~~i~ 589 (795)
T 4a2l_A 516 -E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--EGFYCFNEKDKQIKRYNTTNGLPNNVVY 589 (795)
T ss_dssp -S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--SCEEEEETTTTEEEEECGGGTCSCSCEE
T ss_pred -C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--CCceeECCCCCcEEEeCCCCCCchhheE
Confidence 4 5688899888776 3321 1256777788888665443 3567777665444432211 245789
Q ss_pred EEEEccCCCEEEEE
Q 000085 2207 CMEISLDGHSALIG 2220 (2342)
Q Consensus 2207 sLafSPDGk~LaSG 2220 (2342)
++...++|.+.+++
T Consensus 590 ~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 590 GILEDSFGRLWLST 603 (795)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEc
Confidence 99999999887755
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0032 Score=84.05 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=26.1
Q ss_pred EEecCCC---EEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2127 CVSSDLG---VVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2127 afSPDg~---lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
.+..+|+ .++.++.+|.++++|..+|+.+....
T Consensus 306 d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 306 ELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 3334665 68899999999999999999986543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0086 Score=71.45 Aligned_cols=219 Identities=13% Similarity=0.051 Sum_probs=124.0
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCc--eEEEeccCCccccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT--ILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGT--VrVWDl~tg~~i~t~~ 2077 (2342)
..++|+++|+++++...++.|..||.++. ....+. -...+.++++.++|+++++...... |..+|..++.......
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~ 112 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT 112 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEe
Confidence 34889999998887778899999998753 332222 2346889999999997766544333 5555655554321111
Q ss_pred cCCCCCCccccccCCCCCceeecCC-CccccccCCc---eEE---------ecCCCCCeEEEEEecCCCEE-EEEeCCCc
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASAD-KSRRRRIEGP---IHV---------LRGHHREILCCCVSSDLGVV-VSCSDSSD 2143 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D-~s~~~~i~~~---l~~---------L~GHs~~Vt~VafSPDg~lL-aSGS~DGt 2143 (2342)
.........++..+++..+++.... .+...+.... +.. ..+.-...+.+ +++++.+ ++-...+.
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~ 190 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKML 190 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTE
T ss_pred CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCE
Confidence 1000011111122222222222211 1222222111 100 00111234455 7888765 45556789
Q ss_pred EEEEECCC-CeE--EEEE-ecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-CCCCeEEEEEc---cCCC
Q 000085 2144 LLLHSIRR-GRL--IRRL-VGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-LSGSIGCMEIS---LDGH 2215 (2342)
Q Consensus 2144 IrIWDLrT-Gkl--IrsL-~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-Hs~~ItsLafS---PDGk 2215 (2342)
|.++|+.. +.. ...+ .......++++++|++++.+...+.|.+|+..|......... .....++++|. +|+.
T Consensus 191 I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 191 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred EEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCC
Confidence 99999864 331 1112 112345689999999888877788999999887653221111 23568999999 8988
Q ss_pred EEEEEeC
Q 000085 2216 SALIGVN 2222 (2342)
Q Consensus 2216 ~LaSGS~ 2222 (2342)
.|++++.
T Consensus 271 ~LyVt~~ 277 (306)
T 2p4o_A 271 AIYVVTN 277 (306)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 8877753
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0057 Score=80.19 Aligned_cols=296 Identities=10% Similarity=0.015 Sum_probs=145.5
Q ss_pred CCEEEEEEcCCcEEEEecCCcccceeccc--CC--CCeEE-EEecCCCCEEEEEeC------CCceEEEeccCCcccccc
Q 000085 2008 KEIITGGHVDGSIKLLTSDGAKTLETASG--HC--APVTC-LALSSDSNFLVTGSQ------DTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2008 GklLASGS~DGsIrVWDl~tgkll~tL~G--Ht--~~Vtc-LAfSPDG~~LaSGS~------DGTVrVWDl~tg~~i~t~ 2076 (2342)
+..++.++.|+.+..+|..+|+.+-.... |. ..+++ .... ++ .++.++. ++.|..+|..+++.+.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 55677788899999999999988765432 11 11221 1111 34 5555554 799999999998765544
Q ss_pred ccCCCCCCccccccCC--CCCceeec-CCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC------------
Q 000085 2077 TIEPSSGMGTPGNSIG--SSTPANAS-ADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS------------ 2141 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpD--G~~Las~s-~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D------------ 2141 (2342)
...... ......|. ......+. ..+...|.- ... ..+.......+++.++...++.++.+
T Consensus 193 ~~~~~~--~~~~~~p~~~~~~~~~G~~~~g~~~w~~--~~~-~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 193 FATGSD--DSVRLAKDFNSANPHYGQFGLGTKTWEG--DAW-KIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp ESSSCH--HHHTBCTTTTTTCGGGCCSSHHHHTSST--TGG-GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred ccCCCc--cccccCcccccccccccccccccccCcc--cce-ecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 211100 00000000 00000000 000001110 000 00111111234566666666655532
Q ss_pred ----CcEEEEECCCCeEEEEEecC-----------CcEEEEEecCCc---EEEEEeCCCeEEEEEeC-CceeeeecCCC-
Q 000085 2142 ----SDLLLHSIRRGRLIRRLVGV-----------DAHAVSLSSEGV---IMTWNKLQHTLSSFTLN-GVLVARAKLPL- 2201 (2342)
Q Consensus 2142 ----GtIrIWDLrTGklIrsL~gh-----------~vssLSfSpDG~---IlVwdssdGsI~I~dln-G~~L~s~~~~H- 2201 (2342)
+.|..+|..+|+.+..+... ....+....+|+ +++....+|.+++++.. |+.+-......
T Consensus 268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 35999999999998877532 111222234663 44555666777777653 44433322211
Q ss_pred C-----------CCe--------------------------EEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC-CCC
Q 000085 2202 S-----------GSI--------------------------GCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK-QSG 2243 (2342)
Q Consensus 2202 s-----------~~I--------------------------tsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~-~~~ 2243 (2342)
. .++ ..++++|++..+++.+.+... .++..... ..+
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~------~~~~~~~~~~~g 421 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICM------DWEPFMLPYRAG 421 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEE------EEEECCCCCCTT
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccc------cccccccccccC
Confidence 0 011 246788888888777532110 00000000 000
Q ss_pred ccccccc--cccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2244 TEDFDLA--SDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2244 ~iaFspd--~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
...+... ........ ....++.|..||+.+++.+.++.. ...+.+..+...+..+++++.||.|++||..+.+
T Consensus 422 ~~~~g~~~~~~~~~~~~-~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 422 QFFVGATLAMYPGPNGP-TKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp SCCCCEEEEEEECTTST-TSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CccccccceeccCcccc-CCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 0000000 00000000 001368999999999999888773 2333333344456678889999999999976553
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.012 Score=70.04 Aligned_cols=203 Identities=8% Similarity=0.025 Sum_probs=127.6
Q ss_pred cceecccCCC--CeEEEEecCCCCEEEEEeC--CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc
Q 000085 2030 TLETASGHCA--PVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR 2105 (2342)
Q Consensus 2030 ll~tL~GHt~--~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~ 2105 (2342)
.+.++. |.. ....++|++|+...++.+. +++|.+.|+.+++......
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~---------------------------- 61 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK---------------------------- 61 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE----------------------------
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe----------------------------
Confidence 344443 443 3578999998755555543 6899999999875433220
Q ss_pred ccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeE
Q 000085 2106 RRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2106 ~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI 2184 (2342)
+..+ .....+++. ++.+ ++.-.++.+.++|..+++.+.++......-..+++||..++....++.+
T Consensus 62 ----------l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l 128 (266)
T 2iwa_A 62 ----------MDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSIL 128 (266)
T ss_dssp ----------CCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEE
T ss_pred ----------cCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeE
Confidence 1111 111234444 4444 4555689999999999999999864311223456677654444457888
Q ss_pred EEEEeCCc-eeeeecCC-C---CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCC
Q 000085 2185 SSFTLNGV-LVARAKLP-L---SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNR 2259 (2342)
Q Consensus 2185 ~I~dlnG~-~L~s~~~~-H---s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ 2259 (2342)
.+++.... .+.....+ + -..++.+.|. +|. +.+...
T Consensus 129 ~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~------------------------------------- 169 (266)
T 2iwa_A 129 YEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIW------------------------------------- 169 (266)
T ss_dssp EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET-------------------------------------
T ss_pred EEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecC-------------------------------------
Confidence 88887653 33333222 1 1236677777 663 443321
Q ss_pred ccCCCCeEEEEECCCCeEEEEEecCC------------CCCeEEEEEecCCCEEE-EEeCCCcEEEEeCC
Q 000085 2260 FDFPSPSICFLDLHTLKVFHVLKLGE------------GQDITALALNKDNTNLL-VSTADKQLIVFTDP 2316 (2342)
Q Consensus 2260 ias~DGsIrIWDL~Tgk~L~tL~lgH------------s~~ItsLafSPDG~~La-SGSsDGsIrVWDi~ 2316 (2342)
.++.|.+.|..+++++..+..+. ....+.++|+|+++.|+ ++...+.+.+.++.
T Consensus 170 ---~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 170 ---QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp ---TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred ---CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 14679999999999999997431 13568999999986555 55678889888853
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0048 Score=73.44 Aligned_cols=176 Identities=9% Similarity=0.034 Sum_probs=115.9
Q ss_pred EEEEcCCCCEEEEEEc--CCcEEEEecCCcccceecccCC-CCeEEEEecCCCCEEEE-EeCCCceEEEeccCCcccccc
Q 000085 2001 VVSITHDKEIITGGHV--DGSIKLLTSDGAKTLETASGHC-APVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~--DGsIrVWDl~tgkll~tL~GHt-~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
-+.|++|+.+.++.+. ++.|+++|+.+++.+..+.-.. .....+++. +..|+. .-.++++.++|..+.+.+.++
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 3888998765555443 6899999999999888764211 122345554 445544 446789999999875433221
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR 2156 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr 2156 (2342)
. .+ ... ...+++|++.++.+..++.|.++|..+.+.++
T Consensus 103 ~---------------------------------------~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 103 T---------------------------------------HQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIK 140 (266)
T ss_dssp E---------------------------------------CC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEE
T ss_pred E---------------------------------------CC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEE
Confidence 0 11 011 12245677777766778999999999999888
Q ss_pred EEecC-------CcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC------------CCCCeEEEEEccCCCE
Q 000085 2157 RLVGV-------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP------------LSGSIGCMEISLDGHS 2216 (2342)
Q Consensus 2157 sL~gh-------~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~------------Hs~~ItsLafSPDGk~ 2216 (2342)
++.-. ....+.+. +|.+++-...++.|.+.+.. ++.+.....+ .....+.++|+|+++.
T Consensus 141 ~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~ 219 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR 219 (266)
T ss_dssp EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE
T ss_pred EEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE
Confidence 87632 13456666 78766655567889888885 5454444332 1146689999999987
Q ss_pred EEEEe
Q 000085 2217 ALIGV 2221 (2342)
Q Consensus 2217 LaSGS 2221 (2342)
+++++
T Consensus 220 lfVTg 224 (266)
T 2iwa_A 220 IFVTG 224 (266)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 77665
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.042 Score=74.12 Aligned_cols=217 Identities=7% Similarity=-0.024 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc-------CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCC
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG-------HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G-------Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.+.++...++|.+.++ +.+ -+.+||..+++....... ....|.++...++|. |..|+..+-|.++|..+.
T Consensus 212 ~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp SEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC
T ss_pred ceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCC
Confidence 3556788888886664 444 688999876654322111 245699999987775 455666566788888764
Q ss_pred ccccccc-------------cCCCCCCccccccCCCCCceeecCCCccccccCC-ceEEec----------CCCCCeEEE
Q 000085 2071 FTSRTGT-------------IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG-PIHVLR----------GHHREILCC 2126 (2342)
Q Consensus 2071 ~~i~t~~-------------~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~-~l~~L~----------GHs~~Vt~V 2126 (2342)
....... ......+.++....+|...+.....++..++... ....+. .....|.++
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE
Confidence 3221110 1122345566666666655555455554443321 222221 123568999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEE-----EecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecC--
Q 000085 2127 CVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR-----LVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKL-- 2199 (2342)
Q Consensus 2127 afSPDg~lLaSGS~DGtIrIWDLrTGklIrs-----L~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~-- 2199 (2342)
+..+++. +..|+.++-|..+|..++..... +....+..+...++|.+.+ +...+-+..|+.....+.....
T Consensus 369 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~ 446 (781)
T 3v9f_A 369 CDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEK 446 (781)
T ss_dssp EECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTT
T ss_pred EEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCC
Confidence 8887776 45567667799999876544321 1123366777777887665 3344567777765444443322
Q ss_pred CCCCCeEEEEEccCCCEEEE
Q 000085 2200 PLSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2200 ~Hs~~ItsLafSPDGk~LaS 2219 (2342)
.....|.++...++|...+.
T Consensus 447 ~~~~~v~~i~~d~~g~lwig 466 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWIG 466 (781)
T ss_dssp TCCCCEEEEEECTTSEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEE
Confidence 13467999998888876653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0073 Score=80.12 Aligned_cols=276 Identities=8% Similarity=-0.054 Sum_probs=140.9
Q ss_pred EEEEcC-CCCEEEEEEcCC-----------cEEEEecCCcccce--ecc-cCCCCeEEEEecCCCCEEEEEeC-CCceEE
Q 000085 2001 VVSITH-DKEIITGGHVDG-----------SIKLLTSDGAKTLE--TAS-GHCAPVTCLALSSDSNFLVTGSQ-DTTILL 2064 (2342)
Q Consensus 2001 ~VafSp-DGklLASGS~DG-----------sIrVWDl~tgkll~--tL~-GHt~~VtcLAfSPDG~~LaSGS~-DGTVrV 2064 (2342)
.+++.+ +|++++.|+.++ .+.+||..+++... .+. .+.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 356667 889888887653 58899998876432 222 23333345677889999999984 568999
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeec-CCCc------cccccCCce-EEecC-----CCCCeEEEEEecC
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANAS-ADKS------RRRRIEGPI-HVLRG-----HHREILCCCVSSD 2131 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s-~D~s------~~~~i~~~l-~~L~G-----Hs~~Vt~VafSPD 2131 (2342)
||..+..-...........-......++++.++.++ .++. ..++..... ..+.. ....-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 998875422211111111112233445777777766 2321 112221111 11100 0000000111234
Q ss_pred CCEEEEEeCCC---------cEEEEECCCCeEEEEEecC-----------CcEEEEEe-cCCcEEEEEeCCC--------
Q 000085 2132 LGVVVSCSDSS---------DLLLHSIRRGRLIRRLVGV-----------DAHAVSLS-SEGVIMTWNKLQH-------- 2182 (2342)
Q Consensus 2132 g~lLaSGS~DG---------tIrIWDLrTGklIrsL~gh-----------~vssLSfS-pDG~IlVwdssdG-------- 2182 (2342)
+...+.|+.|| .+..||..+.......... ....+.+. .++++++++..++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 44445555443 5678888877644332211 12333343 4788988886432
Q ss_pred ---eEEEEEeCCceeeee---cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccC
Q 000085 2183 ---TLSSFTLNGVLVARA---KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVD 2256 (2342)
Q Consensus 2183 ---sI~I~dlnG~~L~s~---~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~s 2256 (2342)
.+.+|+.....-... ..+....-.++++.++|+.++.|+.+.... +. ..
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~-------~~------------~~------ 484 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-------FE------------DS------ 484 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT-------TC------------CC------
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC-------cC------------CC------
Confidence 456666543221111 122222234556778999999887432200 00 00
Q ss_pred CCCccCCCCeEEEEECCCCeEEEEEecCC-CCCeEEEEEecCCCEEEEEeC
Q 000085 2257 NNRFDFPSPSICFLDLHTLKVFHVLKLGE-GQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2257 s~~ias~DGsIrIWDL~Tgk~L~tL~lgH-s~~ItsLafSPDG~~LaSGSs 2306 (2342)
..-..+.+||..+.+-...-...+ .....+..+.+||+.++.||.
T Consensus 485 -----~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 -----TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp -----SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred -----CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 012457888887765322111111 112234556799999999985
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.01 Score=70.46 Aligned_cols=175 Identities=11% Similarity=0.088 Sum_probs=112.1
Q ss_pred EEEEcCCCCEEEEEEcCC--cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccc
Q 000085 2001 VVSITHDKEIITGGHVDG--SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DG--sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
-+.|+ ++.+..+.+.+| .|+++|+.+++.++.+.-.. ......+.++++.|+... .++.+.++|..+.+.+.++.
T Consensus 47 GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 47 GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 37777 677777777766 89999999999888775433 233322333455665554 58899999998864433220
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
..++ + .. +++|++.++.+..++.|.++|..+.+.+++
T Consensus 125 --------------------------------------~~~e-G--~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 125 --------------------------------------YDGE-G--WG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp --------------------------------------CSSC-C--CC--EEECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred --------------------------------------CCCC-c--eE--EecCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence 0111 1 22 335666666666678899999999999888
Q ss_pred EecC----C---cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC-----------CCCCeEEEEEccCCCEEE
Q 000085 2158 LVGV----D---AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP-----------LSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2158 L~gh----~---vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~-----------Hs~~ItsLafSPDGk~La 2218 (2342)
+... . ..-+.+. +|.+.+-.-.+..|.+.+.. |+.+...... -..-.+.|+|+|+++.|+
T Consensus 162 I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred EEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 7642 1 2235554 77766555556777777764 4444443332 124669999999888777
Q ss_pred EEe
Q 000085 2219 IGV 2221 (2342)
Q Consensus 2219 SGS 2221 (2342)
+.+
T Consensus 241 VTG 243 (262)
T 3nol_A 241 VTG 243 (262)
T ss_dssp EEE
T ss_pred EEC
Confidence 665
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.05 Score=73.37 Aligned_cols=218 Identities=9% Similarity=-0.062 Sum_probs=128.4
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceec--------------ccCCCCeEEEEecCCCCEEEEEeCCCceE
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETA--------------SGHCAPVTCLALSSDSNFLVTGSQDTTIL 2063 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL--------------~GHt~~VtcLAfSPDG~~LaSGS~DGTVr 2063 (2342)
.+.++...++|.+.+ |+..+-|.++|..+++..... .-....|.++...++|. |..|+.++-|.
T Consensus 259 ~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 259 YIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred eEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 356677778887554 555466888888766432211 11346799999988875 56677777888
Q ss_pred EEeccCCccccccc--------cCCCCCCccccccCCCCCceeecCCCccccccCCc-eEEe----cCCCCCeEEEEEec
Q 000085 2064 LWRIHRAFTSRTGT--------IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGP-IHVL----RGHHREILCCCVSS 2130 (2342)
Q Consensus 2064 VWDl~tg~~i~t~~--------~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~-l~~L----~GHs~~Vt~VafSP 2130 (2342)
.++........... ......+.++....+|...+.....+...++.... ...+ ......|.++...+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 416 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS 416 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC
Confidence 88876543221110 11223455666666666555443445444433221 1111 12346789998887
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEe----cCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-----C
Q 000085 2131 DLGVVVSCSDSSDLLLHSIRRGRLIRRLV----GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-----L 2201 (2342)
Q Consensus 2131 Dg~lLaSGS~DGtIrIWDLrTGklIrsL~----gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-----H 2201 (2342)
++.+.+ |+.++.+..+|..+++...... ...+..+...++|.+.+... +-+..|+..+......... .
T Consensus 417 ~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~ 493 (781)
T 3v9f_A 417 EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLL 493 (781)
T ss_dssp TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCS
T ss_pred CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccc
Confidence 777544 7777789999988876543221 12366777778887655433 5677887764333222111 1
Q ss_pred CCCeEEEEEccCCCEEEEE
Q 000085 2202 SGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSG 2220 (2342)
...|.++...++|.+.+..
T Consensus 494 ~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp CSCEEEEEECTTCCEEEEE
T ss_pred cceeEEEEEcCCCCEEEEE
Confidence 4679999999999877644
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.021 Score=75.39 Aligned_cols=303 Identities=9% Similarity=-0.022 Sum_probs=147.0
Q ss_pred EEEcCCCCE----EEEEEcCCcEEEEecCCcccceecccCC----CCeEE-EEecCCCCEEEEEe------CCCceEEEe
Q 000085 2002 VSITHDKEI----ITGGHVDGSIKLLTSDGAKTLETASGHC----APVTC-LALSSDSNFLVTGS------QDTTILLWR 2066 (2342)
Q Consensus 2002 VafSpDGkl----LASGS~DGsIrVWDl~tgkll~tL~GHt----~~Vtc-LAfSPDG~~LaSGS------~DGTVrVWD 2066 (2342)
++++|.+.. |+.++.|+.+..+|..+|+.+-...... ..+++ ..+. ++ .++.++ .++.|..+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEE
Confidence 455443333 7778889999999999998875543211 11221 1111 44 455554 389999999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCC--ceeec-CCCccccccCCceEEecCCCCCe-EEEEEecCCCEEEEEeCC-
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSST--PANAS-ADKSRRRRIEGPIHVLRGHHREI-LCCCVSSDLGVVVSCSDS- 2141 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~--Las~s-~D~s~~~~i~~~l~~L~GHs~~V-t~VafSPDg~lLaSGS~D- 2141 (2342)
..+++.+......... ....+.|+... -+.+. ......|.- ... ..+ ...+ ...++.++..+++.++.+
T Consensus 189 ~~TG~~~W~~~~~~~~--~~~~~~p~~~~~~~~~g~~~~g~~tw~g-~~~--~~g-g~~~W~~~a~d~~~g~vy~g~g~~ 262 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPD--KDLLLASDFNIKNPHYGQKGLGTGTWEG-DAW--KIG-GGTNWGWYAYDPGTNLIYFGTGNP 262 (599)
T ss_dssp TTTCCEEEEEESSSCH--HHHTBCTTTTTTCGGGCCTTHHHHTSST-TGG--GGC-CCCCCSCCEEETTTTEEEEECCCC
T ss_pred CCCCcEEEEEcCCCCc--cccccccccccccccccccccccccCCC-cce--ecC-CCccccceeEeCCCCEEEEeCCCC
Confidence 9998765544211110 00000000000 00000 000000100 000 001 1111 134566677777766655
Q ss_pred ---------------CcEEEEECCCCeEEEEEecCC-----------cEEEEEe-cCC---cEEEEEeCCCeEEEEEeC-
Q 000085 2142 ---------------SDLLLHSIRRGRLIRRLVGVD-----------AHAVSLS-SEG---VIMTWNKLQHTLSSFTLN- 2190 (2342)
Q Consensus 2142 ---------------GtIrIWDLrTGklIrsL~gh~-----------vssLSfS-pDG---~IlVwdssdGsI~I~dln- 2190 (2342)
+.|..+|..+|+.+..+.... ...+... .+| .+++....+|.+++++..
T Consensus 263 ~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t 342 (599)
T 1w6s_A 263 APWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTD 342 (599)
T ss_dssp SCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCC
Confidence 379999999999987776421 1122222 456 345555666766666653
Q ss_pred CceeeeecCCC------------CC--------------------------CeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2191 GVLVARAKLPL------------SG--------------------------SIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2191 G~~L~s~~~~H------------s~--------------------------~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
|+.+-...... .. .-..++++|+..++++...+.....
T Consensus 343 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~---- 418 (599)
T 1w6s_A 343 GALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW---- 418 (599)
T ss_dssp CCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE----
T ss_pred CCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee----
Confidence 44333222110 00 1135678888888877653211000
Q ss_pred cccccCCCCCCccccccc--cccc-cCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 000085 2233 NIQGLNSKQSGTEDFDLA--SDQS-VDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQ 2309 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd--~~~s-~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGs 2309 (2342)
.+.... .......+... .... ....+..-.+|.|..||+.+++.+.....+ .++.+-.+...+..++.++.||.
T Consensus 419 ~~~~~~-~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~ 495 (599)
T 1w6s_A 419 EPFMLP-YKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGY 495 (599)
T ss_dssp EECCCC-CCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSE
T ss_pred eccccc-ccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCe
Confidence 000000 00000000000 0000 000001114689999999999998887632 22222223345667888999999
Q ss_pred EEEEeCCCCC
Q 000085 2310 LIVFTDPALS 2319 (2342)
Q Consensus 2310 IrVWDi~sLs 2319 (2342)
|+.||..+.+
T Consensus 496 l~A~D~~tG~ 505 (599)
T 1w6s_A 496 LKARDSDTGD 505 (599)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCC
Confidence 9999976553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.026 Score=74.00 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=29.0
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
.|+.|+.+|..+++.+..+..+....-.-+.+..+|+.+++
T Consensus 483 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 483 LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 58999999999999999988554322233445677765443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0063 Score=79.42 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=82.1
Q ss_pred CCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCC-------------------------------------
Q 000085 2141 SSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQH------------------------------------- 2182 (2342)
Q Consensus 2141 DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdG------------------------------------- 2182 (2342)
++.+.+.|..+.+.+.++.- .....+++++||++.+....+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 34667777777776666552 2344566677776665554321
Q ss_pred -eEEEEEeCC---ce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCC
Q 000085 2183 -TLSSFTLNG---VL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDN 2257 (2342)
Q Consensus 2183 -sI~I~dlnG---~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss 2257 (2342)
.+.+.+... .. +... +-.....++.++|||+++++++.
T Consensus 254 ~~V~VID~~~~~~~~~~~~I--pvg~~PhGv~~sPDGk~v~V~~~----------------------------------- 296 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYI--PIANNPHGCNMAPDKKHLCVAGK----------------------------------- 296 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEE--EEESSCCCEEECTTSSEEEEECT-----------------------------------
T ss_pred CcEEEEeCcccCCceeEEEE--ecCCCceEEEEcCCCCEEEEeCC-----------------------------------
Confidence 234444432 11 1111 12235667899999999987741
Q ss_pred CCccCCCCeEEEEECCCCe------------EEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 000085 2258 NRFDFPSPSICFLDLHTLK------------VFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2258 ~~ias~DGsIrIWDL~Tgk------------~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~s 2317 (2342)
.+.+|.++|+.+.+ .+..+. -+.....++|+++|...++.--|+.|.+|++..
T Consensus 297 -----~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 297 -----LSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -----TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred -----CCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 14678888888653 344444 345689999999994334556899999999644
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.094 Score=64.25 Aligned_cols=178 Identities=8% Similarity=-0.031 Sum_probs=105.6
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
|.+..++. +|+.+ ..+.|+..++++......+.+. ..+..++|++.+..| ++-...+.|..+++......
T Consensus 38 C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~------ 108 (349)
T 3v64_C 38 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE------ 108 (349)
T ss_dssp EEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------
T ss_pred ccccccCc-eeEee-cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCce------
Confidence 34444433 33333 3456888888765544444433 347899999765555 45456677877777653110
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
..+.........+++.+.+.. .++-...+.|.+.++........+
T Consensus 109 ----------------------------------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~ 154 (349)
T 3v64_C 109 ----------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL 154 (349)
T ss_dssp ----------------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ----------------------------------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE
Confidence 001111233467888875544 455566788999998654332222
Q ss_pred ec--CCcEEEEEecCCcEEEE-EeCC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2159 VG--VDAHAVSLSSEGVIMTW-NKLQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2159 ~g--h~vssLSfSpDG~IlVw-dssd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.. .....++++|++..+.| +... +.|..++.+|..........-...+.+++++++..|..+.
T Consensus 155 ~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 155 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 22 34678999986555555 4444 7888888887544433222345678999999888777663
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0083 Score=81.04 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=71.9
Q ss_pred eeEEEEEc-CCCCEEEEEEc-CC----cEEEEecCCc-ccce-ecccCCCCeEEEEecCCCCEEEEEeCCC-----ceEE
Q 000085 1998 SSAVVSIT-HDKEIITGGHV-DG----SIKLLTSDGA-KTLE-TASGHCAPVTCLALSSDSNFLVTGSQDT-----TILL 2064 (2342)
Q Consensus 1998 Svt~VafS-pDGklLASGS~-DG----sIrVWDl~tg-kll~-tL~GHt~~VtcLAfSPDG~~LaSGS~DG-----TVrV 2064 (2342)
.....+|| |||++||.+.. +| +|+++|+.++ +.+. .+. .....++|+|||+.|+..+.|. .|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 34568999 99998886543 23 4999999998 6332 122 1235689999999888777653 3555
Q ss_pred EeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEec-CCCCCeEEEEEecCCCEEEEEeC---
Q 000085 2065 WRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLR-GHHREILCCCVSSDLGVVVSCSD--- 2140 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~-GHs~~Vt~VafSPDg~lLaSGS~--- 2140 (2342)
|++.++... ....+. .+......+.|+|||++|+..+.
T Consensus 252 ~~lgt~~~~--------------------------------------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 293 (751)
T 2xe4_A 252 HVMGKLQSE--------------------------------------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE 293 (751)
T ss_dssp EETTSCGGG--------------------------------------CEEEEECCCTTCEEEEEECTTSSEEEEEEECSS
T ss_pred EECCCCchh--------------------------------------cEEEEecCCCceEEEEEECCCCCEEEEEecCCC
Confidence 555442100 011111 12234567889999998876553
Q ss_pred CCcEEEEECCCC
Q 000085 2141 SSDLLLHSIRRG 2152 (2342)
Q Consensus 2141 DGtIrIWDLrTG 2152 (2342)
...|+++|+.++
T Consensus 294 ~~~l~~~d~~~~ 305 (751)
T 2xe4_A 294 TAEVHLLDLRKG 305 (751)
T ss_dssp CEEEEEEESSSC
T ss_pred CceEEEEECCCC
Confidence 346888998875
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.04 Score=65.65 Aligned_cols=139 Identities=9% Similarity=-0.024 Sum_probs=83.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
....+++|+++|+++++-..++.|..||...... ..+ .
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------------------------------------~~~-~ 69 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------------------------------------IHA-T 69 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------------------------------------EEE-E
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------------------------------------EEE-e
Confidence 3467899999999777777788888887654210 000 0
Q ss_pred CCCCeEEEEEecCCCEEEEEeCC--CcEEEEECCCCeEEEEEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCc-
Q 000085 2119 HHREILCCCVSSDLGVVVSCSDS--SDLLLHSIRRGRLIRRLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGV- 2192 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaSGS~D--GtIrIWDLrTGklIrsL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~- 2192 (2342)
....+.+++++++++++++.... ..|..+|..+++........ ....++..+++.+++.+..++.++.++..+.
T Consensus 70 ~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 70 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 12357889999999976665433 24777788888764433221 1234455666667777766788887776532
Q ss_pred -eeee--------ecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2193 -LVAR--------AKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2193 -~L~s--------~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.+.. .....-...+.+ ++|+.+|+.+.
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 1110 000111234555 78888777653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.11 Score=65.72 Aligned_cols=156 Identities=5% Similarity=-0.045 Sum_probs=97.5
Q ss_pred cceeEEEEEcC-CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-CCc---eEEEeccCC
Q 000085 1996 IRSSAVVSITH-DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-DTT---ILLWRIHRA 2070 (2342)
Q Consensus 1996 I~Svt~VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGT---VrVWDl~tg 2070 (2342)
+.....++++| ++..|......+.|+.+|..+++..... ........++|+++|++|+.+.. ++. ..+|....+
T Consensus 136 ~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 136 FGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 34456789998 3444544444488999998876544333 34456789999999996655543 221 122222221
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSI 2149 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDL 2149 (2342)
.. . ....+. ......+++++| ++.++++-..++.|..+|.
T Consensus 215 ~~-----------------------~---------------~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 215 GF-----------------------K---------------VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp TS-----------------------C---------------SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred ce-----------------------e---------------eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 10 0 000111 112356788999 6777777777889999999
Q ss_pred CCCeEEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCC
Q 000085 2150 RRGRLIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2150 rTGklIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG 2191 (2342)
.++........ .....++++++|+ +++.+...+.|..++.++
T Consensus 256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 87765332222 2367899999999 667777788999988765
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.029 Score=74.08 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=30.0
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEE
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLL 2302 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~La 2302 (2342)
..|+.++.+|..+|+.+..+..+......-+.+..+|++.+
T Consensus 491 t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 491 TLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 35899999999999999998865443334456667886443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.078 Score=65.90 Aligned_cols=178 Identities=8% Similarity=-0.033 Sum_probs=105.3
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
|.+..+++ +|+.+ ..+.|+.+++.++.....+.+ ...+..++|++.+..| ++-...+.|..++.......
T Consensus 81 C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~------ 151 (386)
T 3v65_B 81 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE------ 151 (386)
T ss_dssp EEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE------
T ss_pred ECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE------
Confidence 34444433 33333 346788899877655444443 3457899999755544 45556677888877653110
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
..+.........+++.+.+.. .++-...+.|.+.++........+
T Consensus 152 ----------------------------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~ 197 (386)
T 3v65_B 152 ----------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL 197 (386)
T ss_dssp ----------------------------------EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE
T ss_pred ----------------------------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee
Confidence 001111123456778865444 455556678888887644322222
Q ss_pred ec--CCcEEEEEecCCcEEEEE-eCC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2159 VG--VDAHAVSLSSEGVIMTWN-KLQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2159 ~g--h~vssLSfSpDG~IlVwd-ssd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.. .....++++|++..+.|. ... +.|..++.+|..........-...+.|++++++..|+.+.
T Consensus 198 ~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 198 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 22 346788999866655555 444 6788888887544433222344678999998888777663
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.027 Score=66.74 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=114.3
Q ss_pred eEEEEecCCCCEEEEEeCCC--ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2041 VTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
...+.|+ ++.+.++++.+| .|+++|+.+++..... ..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~----------------------------------------~l 83 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI----------------------------------------EL 83 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE----------------------------------------EC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE----------------------------------------ec
Confidence 5788998 677777878776 8999999987543322 10
Q ss_pred CCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeee
Q 000085 2119 HHREILCCCVSSDLGVVVS-CSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVAR 2196 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLaS-GS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s 2196 (2342)
........+.++++.++. .-.++.+.++|..+++.+.++.... .-..+++||..++....++.+.+++... +.+..
T Consensus 84 -~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 84 -GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp -CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred -CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence 112222222233445544 4468899999999999999997533 2233445665544443467788888763 34443
Q ss_pred ecCC-CC---CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEEC
Q 000085 2197 AKLP-LS---GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDL 2272 (2342)
Q Consensus 2197 ~~~~-Hs---~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL 2272 (2342)
.... .. ..++.+.|. +|+ +.+.. | .++.|.+.|.
T Consensus 162 I~V~~~g~~~~~lNELe~~-~G~-lyan~-------------w---------------------------~~~~I~vIDp 199 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV-DGE-IFANV-------------W---------------------------QTNKIVRIDP 199 (262)
T ss_dssp EECEETTEECCCEEEEEEE-TTE-EEEEE-------------T---------------------------TSSEEEEECT
T ss_pred EEeccCCccccccceeEEE-CCE-EEEEE-------------c---------------------------cCCeEEEEEC
Confidence 3322 11 334556765 564 44332 1 1467999999
Q ss_pred CCCeEEEEEecCC-----------CCCeEEEEEecCCCEEEEEeC
Q 000085 2273 HTLKVFHVLKLGE-----------GQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2273 ~Tgk~L~tL~lgH-----------s~~ItsLafSPDG~~LaSGSs 2306 (2342)
.+++++..+...- ....+.|+|+|+++.|++.|.
T Consensus 200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999887420 235689999999888777764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.018 Score=68.46 Aligned_cols=171 Identities=12% Similarity=0.101 Sum_probs=109.6
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeE--EEEecCCCCEEE-EEeCCCceEEEeccCCcccccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVT--CLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~Vt--cLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+.|+ ++.+..+.+.+|.|+++|+.+++.++.+ -. .... .+++. ++.|+ ..-.++.+.++|..+.+.+.++.
T Consensus 60 L~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~- 133 (268)
T 3nok_A 60 LVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTR- 133 (268)
T ss_dssp EEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEE-
T ss_pred EEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEe-
Confidence 6666 4667777788899999999999988876 22 2333 35554 44444 44568899999998865433220
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
..++ -+.++ +|++.++.+..++.|.++|..+.+.++++
T Consensus 134 -------------------------------------~~~e---GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I 171 (268)
T 3nok_A 134 -------------------------------------YSGE---GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAV 171 (268)
T ss_dssp -------------------------------------CSSC---CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred -------------------------------------CCCc---eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEE
Confidence 0111 12333 56777777777899999999999998887
Q ss_pred ecCC-------cEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC------------CCCCeEEEEEccCCCEEE
Q 000085 2159 VGVD-------AHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP------------LSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2159 ~gh~-------vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~------------Hs~~ItsLafSPDGk~La 2218 (2342)
.-.. ..-+.+. +|.+.+-...+..|.+.+.. |+.+...... -..-.+.|+++|+++.|+
T Consensus 172 ~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf 250 (268)
T 3nok_A 172 QVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF 250 (268)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred EeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence 6421 2334544 77665544456777777764 4444433321 224679999999766555
Q ss_pred EEe
Q 000085 2219 IGV 2221 (2342)
Q Consensus 2219 SGS 2221 (2342)
+.+
T Consensus 251 VTG 253 (268)
T 3nok_A 251 MTG 253 (268)
T ss_dssp EEE
T ss_pred EeC
Confidence 443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.036 Score=72.79 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=29.7
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV 2303 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS 2303 (2342)
.|+.++.||..+|+.+..+..+....-.-+.+..+|+..++
T Consensus 505 ~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 505 GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 58999999999999999988543322233667778875443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.12 Score=65.53 Aligned_cols=154 Identities=10% Similarity=0.069 Sum_probs=93.7
Q ss_pred ceeEEEEEcCC---CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCC--ceEEEeccCCc
Q 000085 1997 RSSAVVSITHD---KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT--TILLWRIHRAF 2071 (2342)
Q Consensus 1997 ~Svt~VafSpD---GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~ 2071 (2342)
.....++++|+ |+++++- ..+.|+.+|..+++..... +......+++++++|+++++..... .-.++.+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D-~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~- 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVG-QRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA- 215 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEEC-BTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-
T ss_pred CCCceEEEccccCCCEEEEEe-CCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC-
Confidence 34557999985 5554443 3389999999877654433 3445688999999999555543211 1111111100
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS-DLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLr 2150 (2342)
+... . ...+. .-.....+++++ ++.+.++-..++.|+.+|..
T Consensus 216 ---------------------~~~~--------------~-~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 216 ---------------------SGFT--------------E-RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp ---------------------GTTC--------------C-EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred ---------------------CCee--------------c-ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 0000 0 00111 123346678898 67766666678899999998
Q ss_pred CCeEEEEEecC----CcEEEEEecCCc-EEEEEeCCCeEEEEEeC
Q 000085 2151 RGRLIRRLVGV----DAHAVSLSSEGV-IMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2151 TGklIrsL~gh----~vssLSfSpDG~-IlVwdssdGsI~I~dln 2190 (2342)
++.....+... ....++++++|. +++.+...+.|..++.+
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 88763333221 134699999998 67777777889888876
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.26 Score=59.61 Aligned_cols=217 Identities=10% Similarity=-0.035 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc----cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccc
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS----GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~----GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
+.+|.+.+++..+++| .+|.| +...+.|+.-..+. .....+.++.+.+ +..++ ++.++.|.. ..+.+..-.
T Consensus 38 ~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp EEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCE
T ss_pred EEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCce
Confidence 4557888788877765 46655 33445554322221 1244688999976 44444 455664433 222232222
Q ss_pred cccc--CCCCCCccccccCCCCCceeecCCCccc-cccCCce-EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC-
Q 000085 2075 TGTI--EPSSGMGTPGNSIGSSTPANASADKSRR-RRIEGPI-HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSI- 2149 (2342)
Q Consensus 2075 t~~~--~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i~~~l-~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDL- 2149 (2342)
.... ..+..+..+.+..++..++.+....+.+ .+-...- ....++...+..+++.+++.+++.+...+..+-+|-
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g 192 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG 192 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC
Confidence 2111 1122344455445555444443222211 1111111 122345567899999998887776654433333442
Q ss_pred -CCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC---CCCCeEEEEEccCCCEEEEEe
Q 000085 2150 -RRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP---LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2150 -rTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~---Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.+-+.+..........+.++++|.+++.. .+|.+.....+ |..-.....+ +...+.++.+.+++..+++|.
T Consensus 193 G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 193 QTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp CSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred CCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence 22333322122345677788898876654 45666554333 3322222211 334689999999888888764
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.1 Score=68.65 Aligned_cols=54 Identities=19% Similarity=0.043 Sum_probs=39.5
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.+|.|..||+.+++.+.....+ .++..-.....+..+++|+.||.|+.||..+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence 3689999999999998887732 22322222335667888999999999997655
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.068 Score=63.88 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=60.7
Q ss_pred CeEEEEEecCCCEEEEE-eCCCcEEEEECCCC---e--EEEEEecCCcEEEEEecCCcEEEEEeC----------CCeEE
Q 000085 2122 EILCCCVSSDLGVVVSC-SDSSDLLLHSIRRG---R--LIRRLVGVDAHAVSLSSEGVIMTWNKL----------QHTLS 2185 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSG-S~DGtIrIWDLrTG---k--lIrsL~gh~vssLSfSpDG~IlVwdss----------dGsI~ 2185 (2342)
....++|+++++.++.+ +.++.|.++++... . ....+.+ ...++++++|.+.+.+.. .+.|.
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~ 263 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGI 263 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCCEEEEecCcccccccCCCccEEE
Confidence 34678999999865544 56789999998742 2 2222222 667899999998777654 35677
Q ss_pred EEEeCCceeeeecCCC---CCCeEEEEEccCCCEEE
Q 000085 2186 SFTLNGVLVARAKLPL---SGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~H---s~~ItsLafSPDGk~La 2218 (2342)
.|+..|..+.....+. ...++++++ .+|+..+
T Consensus 264 ~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v 298 (322)
T 2fp8_A 264 KFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYI 298 (322)
T ss_dssp EECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEE
T ss_pred EECCCCCEEEEEECCCCCccccceEEEE-eCCEEEE
Confidence 8887777665544332 245667766 3554444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.078 Score=70.34 Aligned_cols=223 Identities=9% Similarity=-0.086 Sum_probs=120.5
Q ss_pred EEEEcCCCCEEEEEE-cCCcEEEEecCCcccceecccCCCC-eEEEEecCCCCEEEEEe-CC-----CceEEEeccCCcc
Q 000085 2001 VVSITHDKEIITGGH-VDGSIKLLTSDGAKTLETASGHCAP-VTCLALSSDSNFLVTGS-QD-----TTILLWRIHRAFT 2072 (2342)
Q Consensus 2001 ~VafSpDGklLASGS-~DGsIrVWDl~tgkll~tL~GHt~~-VtcLAfSPDG~~LaSGS-~D-----GTVrVWDl~tg~~ 2072 (2342)
.+++..+|++++.|+ .++.+.+||..+++-...-..+... -.++++.++|+.++.|+ .+ ..+.+||..+..-
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 467789999888887 4568999998876533221111111 12345557899999988 44 5789999987542
Q ss_pred ccccc---cCCCCCCccccccCCCCCceeecCCCcc----------ccccCCc--eEEecCC---------CCCeEEEEE
Q 000085 2073 SRTGT---IEPSSGMGTPGNSIGSSTPANASADKSR----------RRRIEGP--IHVLRGH---------HREILCCCV 2128 (2342)
Q Consensus 2073 i~t~~---~~~~~~V~svs~SpDG~~Las~s~D~s~----------~~~i~~~--l~~L~GH---------s~~Vt~Vaf 2128 (2342)
..... ...........+..++...+.+..++.. .++.... ......+ ...-.++.|
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEec
Confidence 21100 0000111112233445544444333211 1111110 0011111 112244444
Q ss_pred ec-CCCEEEEEeCCC-----------cEEEEECCCCeEEEEE--ecC--C-cEEEEEecCCcEEEEEeCC----------
Q 000085 2129 SS-DLGVVVSCSDSS-----------DLLLHSIRRGRLIRRL--VGV--D-AHAVSLSSEGVIMTWNKLQ---------- 2181 (2342)
Q Consensus 2129 SP-Dg~lLaSGS~DG-----------tIrIWDLrTGklIrsL--~gh--~-vssLSfSpDG~IlVwdssd---------- 2181 (2342)
.. ++++++.|+.++ .|.+||..+....... ..+ . ...+++.++|++++.+..+
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 43 677888887543 6788898877654433 111 1 3455677899999998643
Q ss_pred -CeEEEEEeCCceeeeec-CC-CCCCeEEEEEccCCCEEEEEeCC
Q 000085 2182 -HTLSSFTLNGVLVARAK-LP-LSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2182 -GsI~I~dlnG~~L~s~~-~~-Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
..+.+|+.....-.... .+ ......+..+.+||+.++.|+..
T Consensus 487 ~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred ccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 45788887543322111 11 12233455667999999999853
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.56 Score=56.40 Aligned_cols=168 Identities=13% Similarity=0.011 Sum_probs=102.1
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.+.|+..|+++.+....+.. ...+..++|++++..| ++-..++.|..+++..... +.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~--------------------~~- 66 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--------------------VS- 66 (316)
T ss_dssp BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------------------
T ss_pred CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC--------------------Cc-
Confidence 46789999988765554443 4457899999865544 5555567888888765100 00
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeEEEEEe--cCCcEEEEEecCC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLG-VVVSCSDSSDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEG 2172 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-lLaSGS~DGtIrIWDLrTGklIrsL~--gh~vssLSfSpDG 2172 (2342)
.....+...-.....+++++.+. +.++-...+.|.+.|+........+. ......++++|++
T Consensus 67 ---------------~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~ 131 (316)
T 1ijq_A 67 ---------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 131 (316)
T ss_dssp ----------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred ---------------ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCC
Confidence 00001111123456888886554 44555677899999986544333332 2346789999866
Q ss_pred cEEEEEe-CC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2173 VIMTWNK-LQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2173 ~IlVwds-sd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
..++|.. .. +.|..++.+|..........-...+.+++++++..|+.+.
T Consensus 132 g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 5555554 33 6888888887654433222345678999999888887663
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.099 Score=61.41 Aligned_cols=175 Identities=8% Similarity=0.020 Sum_probs=106.3
Q ss_pred EEEEcCCCCEEEEEEcC--CcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEE-EeCCCceEEEeccCCccccccc
Q 000085 2001 VVSITHDKEIITGGHVD--GSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~D--GsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
-+.|+. +.+..+.+.+ ..|+++|+.+|+.++.+.-... ........+++.|+. .-.++.+.++|..+.+.+.++
T Consensus 25 GL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti- 101 (243)
T 3mbr_X 25 GLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF- 101 (243)
T ss_dssp EEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE-
T ss_pred cEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE-
Confidence 367776 5666666655 4899999999999887653322 222222223444544 456889999999886443322
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
... ..=..++ ++++.++.+..++.|.++|..+.+.+++
T Consensus 102 ---------------------------------------~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~ 139 (243)
T 3mbr_X 102 ---------------------------------------RYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGS 139 (243)
T ss_dssp ---------------------------------------ECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred ---------------------------------------eCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence 110 1113333 4666666666688999999999999888
Q ss_pred EecC-------CcEEEEEecCCcEEEEEeCCCeEEEEEeC-CceeeeecCC------------CCCCeEEEEEccCCCEE
Q 000085 2158 LVGV-------DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVARAKLP------------LSGSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2158 L~gh-------~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~s~~~~------------Hs~~ItsLafSPDGk~L 2217 (2342)
+.-. ...-+.+. +|.+.+-.-.+..|.+.+.. |+.+...... ...-.+.|+++|+++.|
T Consensus 140 I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 140 IKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred EEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 7642 12233333 66655444455666666664 4444333221 22467999999987777
Q ss_pred EEEe
Q 000085 2218 LIGV 2221 (2342)
Q Consensus 2218 aSGS 2221 (2342)
++.+
T Consensus 219 fVTG 222 (243)
T 3mbr_X 219 FVTG 222 (243)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.026 Score=76.18 Aligned_cols=143 Identities=8% Similarity=-0.026 Sum_probs=82.3
Q ss_pred cCCC-CeEEEEec-CCCCEEEEEeC-C----CceEEEeccCC-ccccccccCCCCCCccccccCCCCCceeecCCCcccc
Q 000085 2036 GHCA-PVTCLALS-SDSNFLVTGSQ-D----TTILLWRIHRA-FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR 2107 (2342)
Q Consensus 2036 GHt~-~VtcLAfS-PDG~~LaSGS~-D----GTVrVWDl~tg-~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~ 2107 (2342)
+|.- .+...+|| |||++|+-+.. + .+|+++|+.++ ..+.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------------------------------- 216 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------------------------------- 216 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---------------------------------
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---------------------------------
Confidence 4543 68889999 99998875432 3 35999998875 3110
Q ss_pred ccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeE--EEEEec--CC-cEEEEEecCCcEEEE
Q 000085 2108 RIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS-----SDLLLHSIRRGRL--IRRLVG--VD-AHAVSLSSEGVIMTW 2177 (2342)
Q Consensus 2108 ~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D-----GtIrIWDLrTGkl--IrsL~g--h~-vssLSfSpDG~IlVw 2177 (2342)
..+ . .....++|+||++.|+....| ..|++|++.+++. ...+.. .. ...+.+|+||+.+++
T Consensus 217 ---~~~---~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~ 287 (751)
T 2xe4_A 217 ---DKV---S---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI 287 (751)
T ss_dssp ---CCE---E---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE
T ss_pred ---ccc---c---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE
Confidence 000 0 012356788888777666654 2588888877641 222221 12 356789999998887
Q ss_pred EeC---CCeEEEEEeCCc--ee--eeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2178 NKL---QHTLSSFTLNGV--LV--ARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2178 dss---dGsI~I~dlnG~--~L--~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
... ...+.++++.+. .. ............++.|+. |..|+..+
T Consensus 288 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t 337 (751)
T 2xe4_A 288 GSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILT 337 (751)
T ss_dssp EEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEE
T ss_pred EecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEe
Confidence 653 235777777642 12 222212344555655543 55554443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.17 Score=59.47 Aligned_cols=183 Identities=10% Similarity=0.038 Sum_probs=111.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCC--ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe
Q 000085 2039 APVTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL 2116 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L 2116 (2342)
.-...+.|+. +.+..+.+.+| .|++.|+.+++..... .+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~--------------------------------------~l 61 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA--------------------------------------EV 61 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE--------------------------------------EC
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE--------------------------------------eC
Confidence 3467899985 56666767654 8999999987543322 01
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCCCeEEEEEeCC-cee
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLV 2194 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L 2194 (2342)
..+. ---.+++. .+.+.+..-.++.+.++|..+.+.+.++.... ...+ ++||..++.+..++.+.+++... +.+
T Consensus 62 ~~~~-fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~ 137 (243)
T 3mbr_X 62 PPPY-FGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQV 137 (243)
T ss_dssp CTTC-CEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEE
T ss_pred CCCc-ceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEE
Confidence 1110 00122332 23333445578999999999999999997532 3333 35565444444577888888754 333
Q ss_pred eeecCC-CC---CCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2195 ARAKLP-LS---GSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2195 ~s~~~~-Hs---~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
.+.... +. ..++.+.+. +|+ +.+.. | .+..|.+.
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~-~G~-lyanv-------------w---------------------------~s~~I~vI 175 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWV-NGE-LLANV-------------W---------------------------LTSRIARI 175 (243)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTE-EEEEE-------------T---------------------------TTTEEEEE
T ss_pred EEEEEccCCcccccceeeEEe-CCE-EEEEE-------------C---------------------------CCCeEEEE
Confidence 333222 11 244556654 454 33332 1 14579999
Q ss_pred ECCCCeEEEEEecC------------CCCCeEEEEEecCCCEEEEEeC
Q 000085 2271 DLHTLKVFHVLKLG------------EGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2271 DL~Tgk~L~tL~lg------------Hs~~ItsLafSPDG~~LaSGSs 2306 (2342)
|..+++++..+..+ .....+.|+++|++..|++.+.
T Consensus 176 Dp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 176 DPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999988743 1235799999998877776654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.052 Score=64.49 Aligned_cols=177 Identities=14% Similarity=0.007 Sum_probs=112.2
Q ss_pred eeecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCC-EEEEEEcCCcEEEEecCCccc
Q 000085 1952 FLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKT 2030 (2342)
Q Consensus 1952 flf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkl 2030 (2342)
+.|.++....+.+.++.+++++..++...... ++.. .-. .-+++ +++ +.+....++.+.+||..+.+.
T Consensus 60 L~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------~Fg-eGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 60 LVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-------IFA-EGLAS--DGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp EEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-------CCE-EEEEE--CSSCEEEEESSSCEEEEEETTTTEE
T ss_pred EEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-------cce-eEEEE--eCCEEEEEEccCCEEEEEECCcCcE
Confidence 55666777777777778999998875443333 2211 100 11333 444 444555688999999999999
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE 2110 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~ 2110 (2342)
+.++..-... +.+ ++|++.|+.+..+++|.++|..+.+...+.. +.
T Consensus 129 ~~ti~~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~--------------------V~----------- 174 (268)
T 3nok_A 129 ERTTRYSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ--------------------VK----------- 174 (268)
T ss_dssp EEEEECSSCC-CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEE--------------------CE-----------
T ss_pred EEEEeCCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEE--------------------eC-----------
Confidence 8887643222 233 3578888887778999999988854332220 00
Q ss_pred CceEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---------------CcEEEEEecCCc-
Q 000085 2111 GPIHVLRG-HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV---------------DAHAVSLSSEGV- 2173 (2342)
Q Consensus 2111 ~~l~~L~G-Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh---------------~vssLSfSpDG~- 2173 (2342)
..+ .-..++.+.|. +|...+..-.+..|.+.|.++|+.+..+... -...+++++++.
T Consensus 175 -----~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 175 -----LRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp -----ETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred -----CCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 000 01234556665 6765555557889999999999999998642 136789998654
Q ss_pred EEEEEe
Q 000085 2174 IMTWNK 2179 (2342)
Q Consensus 2174 IlVwds 2179 (2342)
+++.+-
T Consensus 249 lfVTGK 254 (268)
T 3nok_A 249 IFMTGK 254 (268)
T ss_dssp EEEEET
T ss_pred EEEeCC
Confidence 555443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.51 E-value=1.2 Score=55.45 Aligned_cols=168 Identities=12% Similarity=-0.004 Sum_probs=104.6
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.+.|+..++++......+. ....+..++|++.+..|+ +-...+.|..+++......
T Consensus 91 ~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---------------------- 147 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------------------- 147 (400)
T ss_dssp TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------------------------
T ss_pred cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC----------------------
Confidence 5789999988765444443 345688999998655554 4445677777777542100
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecCC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEG 2172 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG 2172 (2342)
......+.........+++.+. +.+.++-...+.|.+.++........+.. .....+++.|.+
T Consensus 148 --------------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~ 213 (400)
T 3p5b_L 148 --------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 213 (400)
T ss_dssp --------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT
T ss_pred --------------CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc
Confidence 0001111222345678899874 44555666678999999876544333332 346889999866
Q ss_pred cEEEEEe-C-CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2173 VIMTWNK-L-QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2173 ~IlVwds-s-dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
..++|.. . .+.|..++++|..........-...+.|++++++..|+.+.
T Consensus 214 g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 214 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp TEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEE
Confidence 6666654 2 36788888887554433322335789999999888887663
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.47 Score=58.83 Aligned_cols=173 Identities=11% Similarity=0.016 Sum_probs=101.2
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCE-EEEEeCCCceEEEeccCCccccc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNF-LVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~-LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
....++|++.+. ++++-...+.|+.++.+++.....+.........+++.+.+.. .++-...+.|.+.++.....
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--- 193 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--- 193 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---
Confidence 345689997555 5555556788999998876543333323334567888875444 45545556666665543110
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CC-CcEEEEECCCCe
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DS-SDLLLHSIRRGR 2153 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~D-GtIrIWDLrTGk 2153 (2342)
...+...-.....++++|.+..|+.+. .+ +.|...++....
T Consensus 194 -------------------------------------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 194 -------------------------------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp -------------------------------------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred -------------------------------------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 001112224568899998766555444 44 678888875433
Q ss_pred EEEEEec--CCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEE
Q 000085 2154 LIRRLVG--VDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEI 2210 (2342)
Q Consensus 2154 lIrsL~g--h~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLaf 2210 (2342)
....+.. .....+++++++ .+++.+...+.|..++++|................|++
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav 296 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 296 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence 2222221 235789999754 55555667788999998875433332223345677777
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.25 Score=58.43 Aligned_cols=189 Identities=9% Similarity=0.137 Sum_probs=120.9
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecc--cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETAS--GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~--GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
...++++|++. ++++...++.|...|.. ++.++.+. +. ...-.|++.+++.++++.-.++.+.++++........
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~ 106 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI 106 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence 34589999866 55557778889999988 77777653 33 4577888888888878766778888888765321000
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CC
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR---RG 2152 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr---TG 2152 (2342)
. ..... ... ...+......++|+|+++.++++.......+|.+. ++
T Consensus 107 ~----------------------------~~~~~--~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~ 155 (255)
T 3qqz_A 107 L----------------------------KKIKI--PLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS 155 (255)
T ss_dssp E----------------------------EEEEC--CCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred e----------------------------eeecc--ccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence 0 00000 000 01234567899999998877777765555555543 11
Q ss_pred eEEEEEec---------CCcEEEEEecC-CcEEEEEeCCCeEEEEEeCCceeeeecCCC--------CCCeEEEEEccCC
Q 000085 2153 RLIRRLVG---------VDAHAVSLSSE-GVIMTWNKLQHTLSSFTLNGVLVARAKLPL--------SGSIGCMEISLDG 2214 (2342)
Q Consensus 2153 klIrsL~g---------h~vssLSfSpD-G~IlVwdssdGsI~I~dlnG~~L~s~~~~H--------s~~ItsLafSPDG 2214 (2342)
..+..+.. .....+++.|. |++++.+.....+..++.+|+.+....+.. -.....|+|.++|
T Consensus 156 ~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G 235 (255)
T 3qqz_A 156 NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG 235 (255)
T ss_dssp SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence 11222211 13567888774 567777777788888888887666554442 1377899999999
Q ss_pred CEEEEE
Q 000085 2215 HSALIG 2220 (2342)
Q Consensus 2215 k~LaSG 2220 (2342)
+..+++
T Consensus 236 ~lyIvs 241 (255)
T 3qqz_A 236 NIYIVS 241 (255)
T ss_dssp CEEEEE
T ss_pred CEEEEc
Confidence 866653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.45 Score=58.19 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=103.6
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcccccc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~ 2076 (2342)
...++|++.+. ++.+-...+.|+.++.+++.....+.........+++.+.+ ++.++-...+.|.+.++.....
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---- 150 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---- 150 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce----
Confidence 45689997655 45555567889999988765444333333455788888754 4445555667787777654210
Q ss_pred ccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCC-CcEEEEECCCCeE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDS-SDLLLHSIRRGRL 2154 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~D-GtIrIWDLrTGkl 2154 (2342)
...+...-.....++++|.+..++ +-..+ +.|...++... .
T Consensus 151 ------------------------------------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~ 193 (349)
T 3v64_C 151 ------------------------------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-G 193 (349)
T ss_dssp ------------------------------------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-S
T ss_pred ------------------------------------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-C
Confidence 001112224468899998665554 44444 77888887543 2
Q ss_pred EEEEec---CCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc
Q 000085 2155 IRRLVG---VDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2155 IrsL~g---h~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS 2211 (2342)
...+.. .....+++++++ .+++.+...+.|..++++|................+++.
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~ 254 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF 254 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE
Confidence 222211 235789999755 555556667889999988754333222234466778873
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.30 E-value=0.79 Score=55.48 Aligned_cols=166 Identities=7% Similarity=-0.016 Sum_probs=98.3
Q ss_pred CCcEEEEecCCccc-ceecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCC
Q 000085 2017 DGSIKLLTSDGAKT-LETASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2017 DGsIrVWDl~tgkl-l~tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~ 2094 (2342)
...|+.+++++... ...+......+..++|.+.+ .+.++-...+.|..++.......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------------------- 70 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------- 70 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC---------------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce---------------------
Confidence 46788999887531 11121122346788998854 44555556677777777653100
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecC
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDL-GVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSE 2171 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg-~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpD 2171 (2342)
...+...-.....+++.+.+ .+.++-...+.|.++++........+.. .....+++.|.
T Consensus 71 ------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 71 ------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp ------------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG
T ss_pred ------------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC
Confidence 00011112345678888754 4445556678899999864432222211 23678899987
Q ss_pred CcEEEEEe--CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2172 GVIMTWNK--LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2172 G~IlVwds--sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+..+.|.. ..+.|..++.+|..........-...+.+++++++..|+.+.
T Consensus 133 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence 65555554 257888888887543332222234678999999888777663
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.75 Score=59.32 Aligned_cols=160 Identities=6% Similarity=0.043 Sum_probs=96.3
Q ss_pred ceeEEEEEcCC--CCEEEEEEcCCcEEEEecCCcccceeccc---CCCCeEEEEe-------cCCCCEEEEEeCCC-c--
Q 000085 1997 RSSAVVSITHD--KEIITGGHVDGSIKLLTSDGAKTLETASG---HCAPVTCLAL-------SSDSNFLVTGSQDT-T-- 2061 (2342)
Q Consensus 1997 ~Svt~VafSpD--GklLASGS~DGsIrVWDl~tgkll~tL~G---Ht~~VtcLAf-------SPDG~~LaSGS~DG-T-- 2061 (2342)
.....++|+|. ++++++-...+.|++.|..++.....+.. .......++| +++|++|+.+...+ .
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 34567999983 44555555457799999887665543332 2235789999 99999666665543 2
Q ss_pred ----eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEE
Q 000085 2062 ----ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVV 2136 (2342)
Q Consensus 2062 ----VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLa 2136 (2342)
|.+.+... +|.... ..+ ...+..+ . ....++++|+ +.+++
T Consensus 219 ~~~~V~~i~r~~----------------------~G~~~~--~~~-------~~~v~~~-~---~p~giavdp~~g~LYv 263 (496)
T 3kya_A 219 ESPSVYIIKRNA----------------------DGTFDD--RSD-------IQLIAAY-K---QCNGATIHPINGELYF 263 (496)
T ss_dssp GEEEEEEEECCT----------------------TSCCST--TSC-------EEEEEEE-S---CCCCEEECTTTCCEEE
T ss_pred cCceEEEEecCC----------------------CCceee--ccc-------ceeeccC-C---CceEEEEcCCCCeEEE
Confidence 33333211 000000 000 0011111 1 2356788994 55566
Q ss_pred EEeCCCcEEEEECC-------CCeE-----------EEEE-e--c-CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCC
Q 000085 2137 SCSDSSDLLLHSIR-------RGRL-----------IRRL-V--G-VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2137 SGS~DGtIrIWDLr-------TGkl-----------IrsL-~--g-h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG 2191 (2342)
+-..++.|..+|+. ++.. ...+ . . .....++++|+|. +++.+...+.|+.++.++
T Consensus 264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 67788889999997 5553 2222 1 1 2357899999998 677888888888877765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.98 E-value=2.5 Score=52.69 Aligned_cols=174 Identities=13% Similarity=0.013 Sum_probs=100.4
Q ss_pred ceeEEEEEcCCCCE-EEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCC
Q 000085 1997 RSSAVVSITHDKEI-ITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1997 ~Svt~VafSpDGkl-LASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.....++|++.+.. +.+-...+.|+.+++++. .....+.........+++.+. +++.++-...+.|.+.++...
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 34566899986654 444456788999988752 222233334456778888874 445555556677777766542
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-C-CCcEEEEE
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-D-SSDLLLHS 2148 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~-DGtIrIWD 2148 (2342)
.. ...+...-.....++++|.+..|+... . .+.|...+
T Consensus 192 ~~----------------------------------------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~ 231 (400)
T 3p5b_L 192 KR----------------------------------------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 231 (400)
T ss_dssp SE----------------------------------------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred ce----------------------------------------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence 10 001111233468899998766665444 2 37888888
Q ss_pred CCCCeEEEEEec--CCcEEEEEecCCcEEEE-EeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEE
Q 000085 2149 IRRGRLIRRLVG--VDAHAVSLSSEGVIMTW-NKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEI 2210 (2342)
Q Consensus 2149 LrTGklIrsL~g--h~vssLSfSpDG~IlVw-dssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLaf 2210 (2342)
+........+.. .....+++++++..+.| +...+.|..++++|......... .-....++++
T Consensus 232 ~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v 298 (400)
T 3p5b_L 232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 298 (400)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE
T ss_pred CCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE
Confidence 754332222222 23678999976655544 56678899999887544332211 2234556666
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.92 E-value=0.89 Score=55.05 Aligned_cols=173 Identities=9% Similarity=0.006 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccce-ecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLE-TASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~-tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
....++|.+.+. ++.+-...+.|+.++.+++.... .+...-.....+++.+. +++.++-...+.|.+.++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-- 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence 345688888544 55555667889999987764322 22222345667888864 44555555667788887754210
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS--DSSDLLLHSIRRG 2152 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS--~DGtIrIWDLrTG 2152 (2342)
...+.........+++.|.+..++.+. ..+.|...++..
T Consensus 114 --------------------------------------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG- 154 (318)
T 3sov_A 114 --------------------------------------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG- 154 (318)
T ss_dssp --------------------------------------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-
T ss_pred --------------------------------------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-
Confidence 000112234567899998766655554 357888888753
Q ss_pred eEEEEEec---CCcEEEEEecCC-cEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc
Q 000085 2153 RLIRRLVG---VDAHAVSLSSEG-VIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS 2211 (2342)
Q Consensus 2153 klIrsL~g---h~vssLSfSpDG-~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS 2211 (2342)
.....+.. .....+++++++ .+++.+...+.|..++++|................+++.
T Consensus 155 ~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~ 217 (318)
T 3sov_A 155 SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF 217 (318)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence 32233321 235789999855 555556677899999988744333222233456677775
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.95 Score=55.87 Aligned_cols=177 Identities=14% Similarity=0.187 Sum_probs=103.4
Q ss_pred CEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCC----CC---EEEEEe-C--CCceEEEeccCCc-cccccc
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSD----SN---FLVTGS-Q--DTTILLWRIHRAF-TSRTGT 2077 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPD----G~---~LaSGS-~--DGTVrVWDl~tg~-~i~t~~ 2077 (2342)
.++++....+-+.|||+ +|+.++.+.. +.+..+.+-|+ |+ ++++.. . +++|.++++.... .+...
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i- 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM- 116 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC-
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec-
Confidence 34555556788999999 8888888764 45666666653 22 233333 3 5889999875311 01000
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEE--ecC-CC-EEEEEeCCCcEEEEECC---
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCV--SSD-LG-VVVSCSDSSDLLLHSIR--- 2150 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~Vaf--SPD-g~-lLaSGS~DGtIrIWDLr--- 2150 (2342)
.. ...++ ..-...+..+|+ ++. +. +++....+|.+..|++.
T Consensus 117 -----------------------~~------~~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~ 164 (355)
T 3amr_A 117 -----------------------TD------PDHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK 164 (355)
T ss_dssp -----------------------SC------TTSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT
T ss_pred -----------------------cc------cccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC
Confidence 00 00000 000134555666 564 43 67788888999999882
Q ss_pred ----CCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeC------CceeeeecCC-CCCCeEEEEE--ccCCC-
Q 000085 2151 ----RGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLN------GVLVARAKLP-LSGSIGCMEI--SLDGH- 2215 (2342)
Q Consensus 2151 ----TGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dln------G~~L~s~~~~-Hs~~ItsLaf--SPDGk- 2215 (2342)
+++.+++|... +...+.+.+....++.+..+.-|..|+.. +..+.....+ ....+..|++ .++|+
T Consensus 165 ~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 165 NGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG 244 (355)
T ss_dssp TSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE
T ss_pred CCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE
Confidence 44667887654 46677777766666666666556666643 2233322222 2347888888 56666
Q ss_pred EEEEEe
Q 000085 2216 SALIGV 2221 (2342)
Q Consensus 2216 ~LaSGS 2221 (2342)
||++.+
T Consensus 245 yLivSs 250 (355)
T 3amr_A 245 YLMASS 250 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 677665
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.17 Score=63.81 Aligned_cols=154 Identities=6% Similarity=0.028 Sum_probs=95.8
Q ss_pred CeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCc-EEEEEeCCC----eEEEEEeCCcee
Q 000085 2122 EILCCCVSS-DLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGV-IMTWNKLQH----TLSSFTLNGVLV 2194 (2342)
Q Consensus 2122 ~Vt~VafSP-Dg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~-IlVwdssdG----sI~I~dlnG~~L 2194 (2342)
....++|+| +...|+.+...+.|+.+|+.++........ .....++++++|. +++.+...+ .+..++..+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 457889998 455666666558899999987765544432 3367899999999 555554332 344444444322
Q ss_pred eeecCCCCCCeEEEEEcc-CCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC
Q 000085 2195 ARAKLPLSGSIGCMEISL-DGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH 2273 (2342)
Q Consensus 2195 ~s~~~~Hs~~ItsLafSP-DGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~ 2273 (2342)
.............++++| +|..+++-. .++.|..+|..
T Consensus 218 ~~~~l~~~~~p~giavdp~~g~lyv~d~-----------------------------------------~~~~V~~~~~~ 256 (430)
T 3tc9_A 218 VITELTKGQNCNGAETHPINGELYFNSW-----------------------------------------NAGQVFRYDFT 256 (430)
T ss_dssp SEEEEEECSSCCCEEECTTTCCEEEEET-----------------------------------------TTTEEEEEETT
T ss_pred eeeeeccCCCceEEEEeCCCCEEEEEEC-----------------------------------------CCCEEEEEECC
Confidence 100111123456788888 555444321 14678889988
Q ss_pred CCeEEEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCC
Q 000085 2274 TLKVFHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVFTDP 2316 (2342)
Q Consensus 2274 Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~ 2316 (2342)
++........+.....+.++|+|+|++|+.+ ...+.|.+++..
T Consensus 257 ~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 257 TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 7765333332233457899999999966555 567889998854
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=1.6 Score=52.47 Aligned_cols=179 Identities=13% Similarity=0.012 Sum_probs=102.8
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCC---cccce-ecccCCCCeEEEEecCCC-CEEEEEeCCCceEEEeccCCcc
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDG---AKTLE-TASGHCAPVTCLALSSDS-NFLVTGSQDTTILLWRIHRAFT 2072 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~t---gkll~-tL~GHt~~VtcLAfSPDG-~~LaSGS~DGTVrVWDl~tg~~ 2072 (2342)
...++|++++. ++++-..++.|+.+++++ +.... .+...-.....+++.+.+ +..++-...+.|.+.+......
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~ 111 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 111 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce
Confidence 45688998665 555555678999999876 12222 232223456788888654 4445556677888887654210
Q ss_pred ccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-C-CcEEEEECC
Q 000085 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-S-SDLLLHSIR 2150 (2342)
Q Consensus 2073 i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-D-GtIrIWDLr 2150 (2342)
. ..+.........++++|.+..++.+.. . +.|...++.
T Consensus 112 -~---------------------------------------~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 112 -K---------------------------------------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp -E---------------------------------------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred -E---------------------------------------EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 0 001112235678999987665554443 3 688888874
Q ss_pred CCeEEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEE
Q 000085 2151 RGRLIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2151 TGklIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSG 2220 (2342)
|.....+.. .....+++++++. +++.+...+.|..++.+|......... .......+++. +..++..
T Consensus 152 -G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~ 224 (316)
T 1ijq_A 152 -GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT 224 (316)
T ss_dssp -SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred -CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEE
Confidence 443343322 2367899998655 455556668999999987443322111 22346677774 3344433
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.67 E-value=1.8 Score=51.13 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=120.5
Q ss_pred ecccCCCCeEEEEecCCCCEEEE-EeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCC
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVT-GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEG 2111 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaS-GS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~ 2111 (2342)
.+.|-.+.+..++|+|+++.|++ ...++.|...|.. +......
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i----------------------------------- 64 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI----------------------------------- 64 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-----------------------------------
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-----------------------------------
Confidence 34555567999999998776655 5667777777765 3222111
Q ss_pred ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---EEEEEec--------CCcEEEEEecCCcEEEEEeC
Q 000085 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR---LIRRLVG--------VDAHAVSLSSEGVIMTWNKL 2180 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk---lIrsL~g--------h~vssLSfSpDG~IlVwdss 2180 (2342)
.+.+. ...-.+++.+++.++++.-.++.+.++++.... .+..... .+...+++++++..++....
T Consensus 65 ---~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E 140 (255)
T 3qqz_A 65 ---PLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE 140 (255)
T ss_dssp ---ECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred ---ecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC
Confidence 11111 346677888888877776677889998876543 2233321 12378999998854444444
Q ss_pred CCeEEEEEeCCc----eeeeec------CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccc
Q 000085 2181 QHTLSSFTLNGV----LVARAK------LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLA 2250 (2342)
Q Consensus 2181 dGsI~I~dlnG~----~L~s~~------~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd 2250 (2342)
.....+|.++|. .+.... ..+...+.+++++|....+++-+..
T Consensus 141 ~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~--------------------------- 193 (255)
T 3qqz_A 141 KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE--------------------------- 193 (255)
T ss_dssp SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT---------------------------
T ss_pred cCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC---------------------------
Confidence 444455655431 111110 0134467889999876666655421
Q ss_pred cccccCCCCccCCCCeEEEEECCCCeEEEEEecCCC--------CCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2251 SDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEG--------QDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2251 ~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs--------~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
++.|.++|.. ++++..+.+..+ ..--.|+|.++|+ |+..++.+.+++|.
T Consensus 194 -------------s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 194 -------------SRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp -------------TTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred -------------CCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 3456667754 445555543321 2468899999998 55558888787776
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.59 E-value=2.8 Score=57.18 Aligned_cols=168 Identities=12% Similarity=-0.005 Sum_probs=103.1
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
...|+..++........+. ....+..|+|.+.+. ++++-...+.|+.+++......
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---------------------- 459 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------------------- 459 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------------------
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----------------------
Confidence 4678888887665444444 345678999988544 4455555677877777642100
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecCC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEG 2172 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG 2172 (2342)
......+.........|++.+.++.| ++-...+.|.+.++........+.. .....|++.+.+
T Consensus 460 --------------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 460 --------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp ----------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred --------------cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC
Confidence 00011122223456678888776544 5556678999999865443333322 346889999976
Q ss_pred cEEEEEe-CC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2173 VIMTWNK-LQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2173 ~IlVwds-sd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
..++|.. .. +.|...+++|..........-...+.|++++.+..|+.+.
T Consensus 526 g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 5555553 33 6788888888655544433346789999998888777663
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.58 Score=57.31 Aligned_cols=147 Identities=5% Similarity=0.003 Sum_probs=95.3
Q ss_pred eEEEEecCCCCEEEEEe-CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC
Q 000085 2041 VTCLALSSDSNFLVTGS-QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH 2119 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS-~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH 2119 (2342)
-.|++|.+....|+.++ ..++|..||...+....... ..+ . ..+.
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~----~~~---s---------------------------~~g~ 60 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI----DGA---S---------------------------SNGD 60 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC----TTT---C---------------------------CSSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec----CCc---c---------------------------ccCC
Confidence 35788987656666555 78999999987532111000 000 0 0000
Q ss_pred -CCCeEEEEE---ecCCCEEEEEe-------------CCCcEEEEECC---CCeEEEEEecC---------------CcE
Q 000085 2120 -HREILCCCV---SSDLGVVVSCS-------------DSSDLLLHSIR---RGRLIRRLVGV---------------DAH 2164 (2342)
Q Consensus 2120 -s~~Vt~Vaf---SPDg~lLaSGS-------------~DGtIrIWDLr---TGklIrsL~gh---------------~vs 2164 (2342)
...+..+.| .++++++++.. .+..|..+|+. +++.+...... ...
T Consensus 61 ~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n 140 (334)
T 2p9w_A 61 GEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV 140 (334)
T ss_dssp CSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE
T ss_pred CcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc
Confidence 112467888 57766666433 26789999999 88877665421 256
Q ss_pred EEEEecCCcEEEEEeCC-CeEEEEEeCCceeeeecCC-----CCCCeEEEEEccCCCEEEEEe
Q 000085 2165 AVSLSSEGVIMTWNKLQ-HTLSSFTLNGVLVARAKLP-----LSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2165 sLSfSpDG~IlVwdssd-GsI~I~dlnG~~L~s~~~~-----Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.+++.++|+.++.+... +.|..++.+|..+...... .....+.|+++|+|..|++..
T Consensus 141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~ 203 (334)
T 2p9w_A 141 QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG 203 (334)
T ss_dssp EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES
T ss_pred eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc
Confidence 89999999999999888 8888888877643322111 223477999999999998774
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=2.1 Score=58.28 Aligned_cols=180 Identities=12% Similarity=-0.032 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCc----ccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccCCc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGA----KTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tg----kll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
....++|++.+. ++++-...+.|+.+++... .....+.........|++.+.++ +.++-+..+.|.+.++....
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~ 504 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 504 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe
Confidence 345688888554 5555556678998888753 22233333445567888887664 44555566778777776421
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC-C-CcEEEEEC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD-S-SDLLLHSI 2149 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-D-GtIrIWDL 2149 (2342)
. ...+...-.....|+++|....|+.... + +.|.+.++
T Consensus 505 ~----------------------------------------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 505 R----------------------------------------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp E----------------------------------------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred E----------------------------------------EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 0 0011122345789999997666655543 2 67888888
Q ss_pred CCCeEEEEEec---CCcEEEEEecCCc-EEEEEeCCCeEEEEEeCCceeeeecCC--CCCCeEEEEEccCCCEEEEE
Q 000085 2150 RRGRLIRRLVG---VDAHAVSLSSEGV-IMTWNKLQHTLSSFTLNGVLVARAKLP--LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2150 rTGklIrsL~g---h~vssLSfSpDG~-IlVwdssdGsI~I~dlnG~~L~s~~~~--Hs~~ItsLafSPDGk~LaSG 2220 (2342)
... ....+.. .....|++++.+. +++.+...+.|..++++|......... .-....+|++. +.+|+..
T Consensus 545 dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwt 618 (791)
T 3m0c_C 545 NGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT 618 (791)
T ss_dssp TSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred CCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEE
Confidence 543 3333332 2367899996554 555556667899999887554433221 12234566653 3455544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.71 Score=58.35 Aligned_cols=190 Identities=11% Similarity=0.040 Sum_probs=108.7
Q ss_pred ceeEEEEEcCCCCEEEEEEcC---Cc-EEEEecCCcccc-eecccCCCCeEEEEecC-CCCEEEEEeCCCceEEEeccCC
Q 000085 1997 RSSAVVSITHDKEIITGGHVD---GS-IKLLTSDGAKTL-ETASGHCAPVTCLALSS-DSNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~D---Gs-IrVWDl~tgkll-~tL~GHt~~VtcLAfSP-DG~~LaSGS~DGTVrVWDl~tg 2070 (2342)
.....++++++|+++++.... .. +...+...+... ..+. .-.....++++| +|.+.++-..++.|..+|..++
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 345679999999955554321 11 333333222110 1111 223345688999 6776666667788999988765
Q ss_pred cccccc-ccCCCCCCccccccCCCCCceeecCCC--ccccccC---Cc---eEEecCC---------------CCCeEEE
Q 000085 2071 FTSRTG-TIEPSSGMGTPGNSIGSSTPANASADK--SRRRRIE---GP---IHVLRGH---------------HREILCC 2126 (2342)
Q Consensus 2071 ~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~--s~~~~i~---~~---l~~L~GH---------------s~~Vt~V 2126 (2342)
...... ..........++++++++.+....... +.+++.. .. ...+.+. -.....+
T Consensus 261 ~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gi 340 (433)
T 4hw6_A 261 TLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQG 340 (433)
T ss_dssp CEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEE
T ss_pred eEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccE
Confidence 431222 111112223588999998554443332 2222211 10 1122221 1235678
Q ss_pred EE---------ecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--------------------CcEEEEEe-cCCcEEE
Q 000085 2127 CV---------SSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--------------------DAHAVSLS-SEGVIMT 2176 (2342)
Q Consensus 2127 af---------SPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--------------------~vssLSfS-pDG~IlV 2176 (2342)
++ .+++.+.++-...+.|+.++. +|.. .++.+. ....++++ ++|.+++
T Consensus 341 av~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyV 418 (433)
T 4hw6_A 341 IFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYI 418 (433)
T ss_dssp EEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEE
T ss_pred EEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEE
Confidence 88 677777777777788999985 5643 333221 14678999 8899999
Q ss_pred EEeCCCeEEEEEe
Q 000085 2177 WNKLQHTLSSFTL 2189 (2342)
Q Consensus 2177 wdssdGsI~I~dl 2189 (2342)
.+..++.|+.+++
T Consensus 419 aD~~n~rIr~i~~ 431 (433)
T 4hw6_A 419 GDCDNHRVRKIAP 431 (433)
T ss_dssp EEGGGTEEEEEEE
T ss_pred EeCCCCEEEEEec
Confidence 9988888888765
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.16 E-value=1 Score=54.42 Aligned_cols=176 Identities=9% Similarity=-0.065 Sum_probs=85.1
Q ss_pred CCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc---CCCCCCccccccCCCCCceeecCCCcccc-ccCCceE
Q 000085 2039 APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI---EPSSGMGTPGNSIGSSTPANASADKSRRR-RIEGPIH 2114 (2342)
Q Consensus 2039 ~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~---~~~~~V~svs~SpDG~~Las~s~D~s~~~-~i~~~l~ 2114 (2342)
..+.+|.|.+++..++ ++.++.| ++..+.+..-..... .....+..+.+.+ +..++++....+.+- +-.+.-.
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~ 112 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLHTTDGGQSWS 112 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEEESSTTSSCE
T ss_pred CcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEEECCCCCCce
Confidence 4688888887777676 4556654 223333322111111 1122345555554 333333222111110 0011111
Q ss_pred Ee---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe-c--CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2115 VL---RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV-G--VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2115 ~L---~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~-g--h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
.+ ..+...+..+.+.+++..++.+ .+|.|.. ....|+.-..+. . .....+++.+++.+++.+.. +.+..-.
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~ 189 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTW 189 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEEEEE
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEEEEe
Confidence 11 1233457788887777666555 4565533 222333222222 1 23567788889888776643 4433322
Q ss_pred eC-CceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2189 LN-GVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2189 ln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
-. |..-..........+..+.+.+++..++++
T Consensus 190 d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~ 222 (327)
T 2xbg_A 190 EPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV 222 (327)
T ss_dssp CTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE
T ss_pred CCCCCceeECCCCCCCccceeEECCCCCEEEEe
Confidence 12 322222222355678899999999877655
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=8.7 Score=50.85 Aligned_cols=100 Identities=6% Similarity=-0.083 Sum_probs=64.0
Q ss_pred CCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEec-CCcEEEEEeCCCeEEEEEeCCceeee
Q 000085 2121 REILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSS-EGVIMTWNKLQHTLSSFTLNGVLVAR 2196 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSp-DG~IlVwdssdGsI~I~dlnG~~L~s 2196 (2342)
..+.+++|++.+..| ++-...+.|+.+++........+.. .....+++.. .+++++.+...+.|.+.+++|.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 346778888755444 4444577888888765433222222 2356788986 55566666777899999998864433
Q ss_pred ecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2197 AKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2197 ~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
.....-....++++.|...+|+..
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEE
T ss_pred EEECCCCCeeeEEEEcCCCcEEEe
Confidence 332234678999999975555544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.98 E-value=2 Score=52.53 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=42.3
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--ceec---ccCCCCeEEEEecCC---CCEEE-EEeCC-----CceEE
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKT--LETA---SGHCAPVTCLALSSD---SNFLV-TGSQD-----TTILL 2064 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkl--l~tL---~GHt~~VtcLAfSPD---G~~La-SGS~D-----GTVrV 2064 (2342)
...++|.|||+++++ ..+|.|++++ +++. +..+ .........|+|+|+ +..|+ +-+.+ +.|..
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 456999999996665 4679999998 3332 1111 122346789999998 44444 43332 55666
Q ss_pred EeccC
Q 000085 2065 WRIHR 2069 (2342)
Q Consensus 2065 WDl~t 2069 (2342)
|+...
T Consensus 110 ~~~~~ 114 (352)
T 2ism_A 110 LRHLG 114 (352)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 66653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.29 E-value=3.4 Score=50.60 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=32.3
Q ss_pred eEEEEEcCCCC-EEEEEEcCCcEEEEecCCcc--cceec----ccCCCCeEEEEecCC
Q 000085 1999 SAVVSITHDKE-IITGGHVDGSIKLLTSDGAK--TLETA----SGHCAPVTCLALSSD 2049 (2342)
Q Consensus 1999 vt~VafSpDGk-lLASGS~DGsIrVWDl~tgk--ll~tL----~GHt~~VtcLAfSPD 2049 (2342)
...++|.|+|+ ++++ ...|.|++++.+... .+..+ .........++|+|+
T Consensus 20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp EEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred cEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 45699999999 6655 467999999854321 11111 112345689999996
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.08 E-value=13 Score=52.67 Aligned_cols=303 Identities=15% Similarity=0.077 Sum_probs=143.8
Q ss_pred CEEEEEEcCCcEEEEecCCcccceec-ccCCCCeEEEEecCC------CCEEEEEeC-CCceEEEeccCCccccccccCC
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETA-SGHCAPVTCLALSSD------SNFLVTGSQ-DTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL-~GHt~~VtcLAfSPD------G~~LaSGS~-DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
..++.++ ++.+.++.++.++....- ..-.+.|+|+++.+. +.+++.|.+ |++|+|+++.+...........
T Consensus 524 ~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~ 602 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG 602 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC
Confidence 3455554 677888877655322111 112457999999863 479999997 9999999998644333221111
Q ss_pred CCCCcccccc--CCCCCceeecCCCccc---ccc-CCc----eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2081 SSGMGTPGNS--IGSSTPANASADKSRR---RRI-EGP----IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2081 ~~~V~svs~S--pDG~~Las~s~D~s~~---~~i-~~~----l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
......+.+. .+..++..+..++... ++. ... ...+-| ..++.-..|...+..-+-+..+....++.-+
T Consensus 603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~ 681 (1158)
T 3ei3_A 603 EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN 681 (1158)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS
T ss_pred CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC
Confidence 1111111111 1223445555555422 111 011 112223 3355544454444433333434555555433
Q ss_pred CCeEE-EEEecCCc-EEEEEecCC--cEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2151 RGRLI-RRLVGVDA-HAVSLSSEG--VIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2151 TGklI-rsL~gh~v-ssLSfSpDG--~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
++.. ..+....+ ....|+.+. .-++. ..++.+++..++. ..+.....+-...+..++++|+.+.++.+..+..
T Consensus 682 -~~l~~s~l~~~~v~~~~~F~se~~~~g~v~-~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~ 759 (1158)
T 3ei3_A 682 -HKLVFSNVNLKEVNYMCPLNSDGYPDSLAL-ANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIE 759 (1158)
T ss_dssp -SSEEEEEBSSSCCCEEEEECCSSSTTEEEE-ECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEE
T ss_pred -CceEEeccChHHhceEeccCcccCCCcEEE-EcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEecc
Confidence 3322 22222222 334454322 12222 2234577777642 1122222335578899999998887666542110
Q ss_pred ---CCCCCccccc-----ccC-CCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-
Q 000085 2226 ---TNNGSYDNIQ-----GLN-SKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN- 2295 (2342)
Q Consensus 2226 ---~d~~i~d~Lw-----~l~-~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS- 2295 (2342)
.+........ ... ............... .........-++|++.|-.+.+.+..+.......+.+++..
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~ 838 (1158)
T 3ei3_A 760 VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPH-ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 838 (1158)
T ss_dssp EECSSSSEEESSCCHHHHCSEEEECCCCCC-----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEEC
T ss_pred ccccccccchhhhhhhhhhhhhcccccccccccccCc-hhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEE
Confidence 0000000000 000 000000000000000 00000001235799999999999988887777777777643
Q ss_pred --cC-CCEEEEEe----------CCCcEEEEeCC
Q 000085 2296 --KD-NTNLLVST----------ADKQLIVFTDP 2316 (2342)
Q Consensus 2296 --PD-G~~LaSGS----------sDGsIrVWDi~ 2316 (2342)
.+ ..+|++|+ ..|.|++|++.
T Consensus 839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 22 47888887 34789999965
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=4.3 Score=53.73 Aligned_cols=166 Identities=7% Similarity=-0.006 Sum_probs=97.1
Q ss_pred cCCcEEEEecCCcc-cceecccCCCCeEEEEecCCCCEEEEE-eCCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2016 VDGSIKLLTSDGAK-TLETASGHCAPVTCLALSSDSNFLVTG-SQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgk-ll~tL~GHt~~VtcLAfSPDG~~LaSG-S~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
..+.|++.+++... ....+...-..+..++|++.+..|+-+ ...+.|..+++.....
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--------------------- 74 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------------------- 74 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---------------------
Confidence 46778888887643 222222234457899999866655544 4456677776654210
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEEe---cCCcEEEEEe
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRLV---GVDAHAVSLS 2169 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL~---gh~vssLSfS 2169 (2342)
....+...-.....+++.+.++. .++-...+.|.+.++.... .+.+. ......+++.
T Consensus 75 ------------------~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavd 135 (619)
T 3s94_A 75 ------------------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALD 135 (619)
T ss_dssp ------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEE
T ss_pred ------------------eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEe
Confidence 00111112245788999986554 4555567899999986543 33332 1346789999
Q ss_pred cCCcEEEEEe-C-CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2170 SEGVIMTWNK-L-QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2170 pDG~IlVwds-s-dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
|.+..+.|.. . .+.|...+++|..........-...+.+++++++..|+.+.
T Consensus 136 p~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 136 PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 8755555543 2 46788788887544433322345789999999888777663
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=93.86 E-value=2.1 Score=52.49 Aligned_cols=191 Identities=7% Similarity=0.097 Sum_probs=111.3
Q ss_pred EEEEcCCCCEEEEEE-cCCcEEEEecCCccccee-ccc----CC--CCeEEEEe---cCCCCEEEEEe------------
Q 000085 2001 VVSITHDKEIITGGH-VDGSIKLLTSDGAKTLET-ASG----HC--APVTCLAL---SSDSNFLVTGS------------ 2057 (2342)
Q Consensus 2001 ~VafSpDGklLASGS-~DGsIrVWDl~tgkll~t-L~G----Ht--~~VtcLAf---SPDG~~LaSGS------------ 2057 (2342)
++.|.+....+..++ ..++|..|+..++..... +.+ .. ..+..|.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 478877555444444 899999999986643332 222 11 13579999 68877777543
Q ss_pred -CCCceEEEecc---CCccccccc-c----C-------CCCCCccccccCCCCCceeecCC--CccccccCC-ceEEec-
Q 000085 2058 -QDTTILLWRIH---RAFTSRTGT-I----E-------PSSGMGTPGNSIGSSTPANASAD--KSRRRRIEG-PIHVLR- 2117 (2342)
Q Consensus 2058 -~DGTVrVWDl~---tg~~i~t~~-~----~-------~~~~V~svs~SpDG~~Las~s~D--~s~~~~i~~-~l~~L~- 2117 (2342)
.+..|..+|+. +++...... . . .......++..++|+..++.... .+.+.+..+ .+..+.
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence 26779999998 554433221 0 0 12235677788888877755543 233333322 222221
Q ss_pred -----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE--EEEEe-c-----CCcEE-EEEecCCcE-EEEEeCCC
Q 000085 2118 -----GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL--IRRLV-G-----VDAHA-VSLSSEGVI-MTWNKLQH 2182 (2342)
Q Consensus 2118 -----GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl--IrsL~-g-----h~vss-LSfSpDG~I-lVwdssdG 2182 (2342)
......+.++++|++..|+....+|.+..+|+.+... +..-. + ..... +..-.+|++ ++.+...+
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~ 256 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPY 256 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTE
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCC
Confidence 1122367999999999888887799999999885432 21110 1 11222 344567777 44444445
Q ss_pred eEEEEEeCC
Q 000085 2183 TLSSFTLNG 2191 (2342)
Q Consensus 2183 sI~I~dlnG 2191 (2342)
.+.+.+.++
T Consensus 257 ~~~l~S~Dg 265 (334)
T 2p9w_A 257 AISFRSWDN 265 (334)
T ss_dssp EEEEECSST
T ss_pred EEEEECCCC
Confidence 555554444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=14 Score=48.94 Aligned_cols=164 Identities=12% Similarity=0.042 Sum_probs=100.3
Q ss_pred cCCcEEEEecCCcccceecc-cCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCCCccccccCCC
Q 000085 2016 VDGSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGS 2093 (2342)
Q Consensus 2016 ~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG 2093 (2342)
..+.|+..++++......+. ..-..+..++|++.+..|+ +-..++.|..+++......
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-------------------- 72 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-------------------- 72 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------------------
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--------------------
Confidence 46789999998654433322 2234678999998655554 5556677777776542100
Q ss_pred CCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEe---cCCcEEEEEe
Q 000085 2094 STPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLV---GVDAHAVSLS 2169 (2342)
Q Consensus 2094 ~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~---gh~vssLSfS 2169 (2342)
..+.........+++.+.++.| ++-...+.|.+.++..... ..+. ......+++.
T Consensus 73 --------------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavd 131 (628)
T 4a0p_A 73 --------------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALD 131 (628)
T ss_dssp --------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEE
T ss_pred --------------------EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEc
Confidence 0011111345678888665544 5555667889998864432 2222 1346889999
Q ss_pred cCCcEEEEEe-C-CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2170 SEGVIMTWNK-L-QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2170 pDG~IlVwds-s-dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
|.+..+.|.. . .+.|...+++|....... ..-...+.|++++++..|+.+.
T Consensus 132 p~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 132 PAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEE
Confidence 8544455543 2 567888888875443332 2345788999999888887663
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.2 Score=67.22 Aligned_cols=167 Identities=12% Similarity=-0.008 Sum_probs=91.9
Q ss_pred CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEE-eCCCceEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTG-SQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSG-S~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.+.|++.++.+.+....+... ..+..++|++.+..|+.. ...+.|..+++.+......
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-------------------- 443 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------------- 443 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC--------------------
T ss_pred ccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc--------------------
Confidence 457788888776554444332 346688999866665544 4557788887764100000
Q ss_pred ceeecCCCccccccCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEec--CCcEEEEEecCC
Q 000085 2096 PANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVSLSSEG 2172 (2342)
Q Consensus 2096 Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~g--h~vssLSfSpDG 2172 (2342)
....+.........+++.+. +.++++-...+.|.+.++........+.. .....++++|++
T Consensus 444 ----------------~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~ 507 (699)
T 1n7d_A 444 ----------------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVH 507 (699)
T ss_dssp ----------------CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSS
T ss_pred ----------------eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCC
Confidence 00000000112345666643 34444545567888888765443322221 335678899876
Q ss_pred cEEEEEe-CC-CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2173 VIMTWNK-LQ-HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2173 ~IlVwds-sd-GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
..++|.. .. +.|..++++|..........-...+.|+|++++..|+.+
T Consensus 508 g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 508 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE
Confidence 5555543 22 678888777754332221223456789999987766655
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.47 E-value=3.8 Score=48.02 Aligned_cols=62 Identities=10% Similarity=-0.054 Sum_probs=35.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCC-----CeEEEEEeCCc
Q 000085 2131 DLGVVVSCSDS-----SDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNGV 2192 (2342)
Q Consensus 2131 Dg~lLaSGS~D-----GtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG~ 2192 (2342)
++.+++.|+.+ ..+.+||+.+.+-...-. .......+...++.+++.+..+ ..+..|++...
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 56666777654 368889988776443221 1111122223378888887543 45778887543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=5.3 Score=48.98 Aligned_cols=217 Identities=12% Similarity=0.034 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcc-cceec---ccCCCCeEEEEecCC---CCEE-EEEeC---C----CceE
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAK-TLETA---SGHCAPVTCLALSSD---SNFL-VTGSQ---D----TTIL 2063 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgk-ll~tL---~GHt~~VtcLAfSPD---G~~L-aSGS~---D----GTVr 2063 (2342)
...++|.|||+++++ ..+|.|++++. +++ .+..+ .........|+++|+ +..| ++-+. + +.|.
T Consensus 31 P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 456899999986665 45699999974 444 22211 112345789999997 4444 44432 3 5677
Q ss_pred EEeccCCc--c--ccc----cccCCCCCCccccccCCCCCceeecCCC--------------ccccccCC----------
Q 000085 2064 LWRIHRAF--T--SRT----GTIEPSSGMGTPGNSIGSSTPANASADK--------------SRRRRIEG---------- 2111 (2342)
Q Consensus 2064 VWDl~tg~--~--i~t----~~~~~~~~V~svs~SpDG~~Las~s~D~--------------s~~~~i~~---------- 2111 (2342)
.|+..... . ... ...........+.+.|||...++..... +.+.+...
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~ 188 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN 188 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence 77765431 0 011 1111122346788999997665533211 11111111
Q ss_pred ceEEecCCCCCeEEEEEec-CCCEEEEEeCCC---cEEEEECCCCe------------------EEEEE-ecC-CcEEEE
Q 000085 2112 PIHVLRGHHREILCCCVSS-DLGVVVSCSDSS---DLLLHSIRRGR------------------LIRRL-VGV-DAHAVS 2167 (2342)
Q Consensus 2112 ~l~~L~GHs~~Vt~VafSP-Dg~lLaSGS~DG---tIrIWDLrTGk------------------lIrsL-~gh-~vssLS 2167 (2342)
....-.+|. ....++|+| ++.+.++-...+ .|.+. ..|. .+..+ ..+ ...-++
T Consensus 189 ~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 189 SPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp CCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011122343 346788999 566554432221 13222 2221 11222 111 245566
Q ss_pred E-------ecCCcEEEEEeCCCeEEEEEeCCc--eee-eecCC-CCCCeEEEEEccCCCEEEEE
Q 000085 2168 L-------SSEGVIMTWNKLQHTLSSFTLNGV--LVA-RAKLP-LSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2168 f-------SpDG~IlVwdssdGsI~I~dlnG~--~L~-s~~~~-Hs~~ItsLafSPDGk~LaSG 2220 (2342)
+ ..+|.+++.+...+.|..+++.+. ... ..... ....+..+++.|||.+.++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 6 367888888888888988888742 221 11221 24679999999999877755
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.37 E-value=2.7 Score=54.18 Aligned_cols=193 Identities=7% Similarity=-0.003 Sum_probs=112.2
Q ss_pred cceeEEEEE-------cCCCCEEEEEEcCC-------cEEEEecCC-cccc-----eecccCCCCeEEEEecCC-CCEEE
Q 000085 1996 IRSSAVVSI-------THDKEIITGGHVDG-------SIKLLTSDG-AKTL-----ETASGHCAPVTCLALSSD-SNFLV 2054 (2342)
Q Consensus 1996 I~Svt~Vaf-------SpDGklLASGS~DG-------sIrVWDl~t-gkll-----~tL~GHt~~VtcLAfSPD-G~~La 2054 (2342)
......++| +++|+.|++..+.+ .|.+++... +... +.+.... ...+++++|+ +.+++
T Consensus 185 ~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYv 263 (496)
T 3kya_A 185 TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYF 263 (496)
T ss_dssp CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEE
T ss_pred cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEE
Confidence 445677999 99999555555443 256665443 2322 2222212 2356788995 55556
Q ss_pred EEeCCCceEEEecc-------CCccc-----------ccc-ccCCCCCCccccccCCCCCceeecCCC--ccccccCCc-
Q 000085 2055 TGSQDTTILLWRIH-------RAFTS-----------RTG-TIEPSSGMGTPGNSIGSSTPANASADK--SRRRRIEGP- 2112 (2342)
Q Consensus 2055 SGS~DGTVrVWDl~-------tg~~i-----------~t~-~~~~~~~V~svs~SpDG~~Las~s~D~--s~~~~i~~~- 2112 (2342)
+-..++.|..+|+. ++... ... ..........++++|+|..+....... +++++....
T Consensus 264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~ 343 (496)
T 3kya_A 264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK 343 (496)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc
Confidence 66678889999997 44320 011 111223346789999998544433332 232222111
Q ss_pred --e---EEecCC---C------------CCeE-EEEEe-------cCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---
Q 000085 2113 --I---HVLRGH---H------------REIL-CCCVS-------SDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV--- 2161 (2342)
Q Consensus 2113 --l---~~L~GH---s------------~~Vt-~VafS-------PDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh--- 2161 (2342)
+ ..+.+. . .... .++.. .++.+.++-...+.|+.++ .+|. +.++-+.
T Consensus 344 ~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~ 421 (496)
T 3kya_A 344 KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGAS 421 (496)
T ss_dssp TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTT
T ss_pred ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEeccccc
Confidence 1 222221 1 1233 45554 4567777777788899998 4664 4444321
Q ss_pred -----------------------CcEEEEEecC-CcEEEEEeCCCeEEEEEeCC
Q 000085 2162 -----------------------DAHAVSLSSE-GVIMTWNKLQHTLSSFTLNG 2191 (2342)
Q Consensus 2162 -----------------------~vssLSfSpD-G~IlVwdssdGsI~I~dlnG 2191 (2342)
....|+++++ |.+++.+..+..|+.+++.+
T Consensus 422 ~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 422 TSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp HHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred ccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 1357899996 99999999889999988866
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=92.57 E-value=32 Score=48.94 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=43.4
Q ss_pred cEEEEECCCCeEEEEEecCC---cEEEE---EecC-CcEEEEEe----------CCCeEEEEEeCCceeeeec-CCCCCC
Q 000085 2143 DLLLHSIRRGRLIRRLVGVD---AHAVS---LSSE-GVIMTWNK----------LQHTLSSFTLNGVLVARAK-LPLSGS 2204 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~gh~---vssLS---fSpD-G~IlVwds----------sdGsI~I~dlnG~~L~s~~-~~Hs~~ 2204 (2342)
.|++.|..+.+.+..+.-.+ +.+++ +..+ ..+++.+. ..|.|++|.+.+..+.... ....++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 47778877777776665432 22222 3332 35566553 3478999998644433222 125688
Q ss_pred eEEEEEccCCCEEEEE
Q 000085 2205 IGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2205 ItsLafSPDGk~LaSG 2220 (2342)
|++++-- +| +|++|
T Consensus 888 v~al~~~-~g-~Lla~ 901 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLAS 901 (1158)
T ss_dssp EEEEEEE-TT-EEEEE
T ss_pred CEEEeee-CC-EEEEE
Confidence 8888744 34 55555
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.35 E-value=21 Score=43.98 Aligned_cols=221 Identities=12% Similarity=0.036 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc--eec----ccCCCCeEEEEecCC----CCEEEEEe--CCCceEEEe
Q 000085 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL--ETA----SGHCAPVTCLALSSD----SNFLVTGS--QDTTILLWR 2066 (2342)
Q Consensus 1999 vt~VafSpDGklLASGS~DGsIrVWDl~tgkll--~tL----~GHt~~VtcLAfSPD----G~~LaSGS--~DGTVrVWD 2066 (2342)
...++|.|||+++++-...|.|++++..+++.. ..+ .........|+++|+ +.+.++-+ .++.|.-|.
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~ 113 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML 113 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence 456999999998887655899999987655432 111 223456889999995 43334322 344555555
Q ss_pred ccCCc----c---cccc----ccCCCCCCccccccCCCCCceeecCC--------------CccccccCCc---------
Q 000085 2067 IHRAF----T---SRTG----TIEPSSGMGTPGNSIGSSTPANASAD--------------KSRRRRIEGP--------- 2112 (2342)
Q Consensus 2067 l~tg~----~---i~t~----~~~~~~~V~svs~SpDG~~Las~s~D--------------~s~~~~i~~~--------- 2112 (2342)
+..+. . ...+ ..........+.|.+||...++.... ++.+.+....
T Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~ 193 (347)
T 3das_A 114 YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPG 193 (347)
T ss_dssp BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTT
T ss_pred eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCC
Confidence 54421 1 1111 11122334568899999766554321 1111111111
Q ss_pred -eEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeE------------------EEEEecC--CcEEEEEec
Q 000085 2113 -IHVLRGHHREILCCCVSSDLGVVVSC-SDSSDLLLHSIRRGRL------------------IRRLVGV--DAHAVSLSS 2170 (2342)
Q Consensus 2113 -l~~L~GHs~~Vt~VafSPDg~lLaSG-S~DGtIrIWDLrTGkl------------------IrsL~gh--~vssLSfSp 2170 (2342)
...-.||.+ ...++|+|++.+.++- +.|+.-.|.-+..|.. +..+..+ ...-++|.
T Consensus 194 ~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~- 271 (347)
T 3das_A 194 SPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA- 271 (347)
T ss_dssp CCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-
T ss_pred CeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-
Confidence 122235543 4578899987755543 2333233322222211 1122211 12344554
Q ss_pred CCcEEEEEeCCCeEEEEEeCCcee----eeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2171 EGVIMTWNKLQHTLSSFTLNGVLV----ARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2171 DG~IlVwdssdGsI~I~dlnG~~L----~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
+|.+++.....+.|..+.+.+... .........++..|+..|||.++++..
T Consensus 272 ~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 272 EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 577777777777777777764321 111112347899999999998877654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=10 Score=46.88 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=62.9
Q ss_pred CCeEEEEEecCCCEEEEEe-----------------CCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcE-EEEEeCC
Q 000085 2121 REILCCCVSSDLGVVVSCS-----------------DSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVI-MTWNKLQ 2181 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS-----------------~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~I-lVwdssd 2181 (2342)
...+.+++.++|.+.++.. ..|.|+.+|. ++......+ ...+-+++||||+. ++.+...
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~ 242 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLA 242 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCC
Confidence 3567888888888777654 1245555554 332222222 34678999999965 4556677
Q ss_pred CeEEEEEeC--CceeeeecCCCCCCeEEEEEcc-CCCEEEEEe
Q 000085 2182 HTLSSFTLN--GVLVARAKLPLSGSIGCMEISL-DGHSALIGV 2221 (2342)
Q Consensus 2182 GsI~I~dln--G~~L~s~~~~Hs~~ItsLafSP-DGk~LaSGS 2221 (2342)
+.|..|++. |.......+...+....+++.+ +|.+.+++.
T Consensus 243 ~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 243 HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 899999986 3222211122346778899999 599888664
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=91.94 E-value=12 Score=46.38 Aligned_cols=132 Identities=14% Similarity=0.213 Sum_probs=80.2
Q ss_pred CCcEEEEEC--CCCeEEEEEec---------CCcEEEEE--ecC-CcE-EEEEeCCCeEEEEEeC----C----ceeeee
Q 000085 2141 SSDLLLHSI--RRGRLIRRLVG---------VDAHAVSL--SSE-GVI-MTWNKLQHTLSSFTLN----G----VLVARA 2197 (2342)
Q Consensus 2141 DGtIrIWDL--rTGklIrsL~g---------h~vssLSf--SpD-G~I-lVwdssdGsI~I~dln----G----~~L~s~ 2197 (2342)
+++|.+|++ .++. +..+.. ....-+|+ ++. |.+ ++....+|.+..|.+. | +.+.+.
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999976 3443 444411 23455676 663 543 4445666888888772 2 233333
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECC----
Q 000085 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLH---- 2273 (2342)
Q Consensus 2198 ~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~---- 2273 (2342)
. ..+.+..+.+.+...+|+.+-.+ ..|..+|..
T Consensus 177 ~--lgsq~EgcvvDd~~g~Lyv~eEd-----------------------------------------~GIw~~da~p~~~ 213 (355)
T 3amr_A 177 K--MNSQTEGMAADDEYGRLYIAEED-----------------------------------------EAIWKFSAEPDGG 213 (355)
T ss_dssp E--CSSCEEEEEEETTTTEEEEEETT-----------------------------------------TEEEEEECSTTSC
T ss_pred c--CCCCcceEEEcCCCCeEEEeccc-----------------------------------------ceEEEEeCCcCCC
Confidence 3 45678899999888888877532 124444433
Q ss_pred -CCeEEEEEecCC-CCCeEEEEE--ecCCC-EEEEEe-CCCcEEEEeCC
Q 000085 2274 -TLKVFHVLKLGE-GQDITALAL--NKDNT-NLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2274 -Tgk~L~tL~lgH-s~~ItsLaf--SPDG~-~LaSGS-sDGsIrVWDi~ 2316 (2342)
+++.+..+..++ ...+..|++ .++++ +|++++ .++++.||+..
T Consensus 214 ~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 214 SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 344554443222 246888887 56666 677666 67799999964
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=91.91 E-value=35 Score=43.42 Aligned_cols=231 Identities=13% Similarity=0.131 Sum_probs=140.3
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
.-.+|..++||--. ..++.|+|+++.+.+....-.. .|.--.|-.+ +.|+-.+ +..|.-|++....
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s---------- 136 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGES---------- 136 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSC----------
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCC----------
Confidence 45688888887765 7899999999988777766444 5666677643 3333322 5689999986521
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCC----CCCeEEEEEecCCCEEEEEe-------CCCcEEEEECC
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH----HREILCCCVSSDLGVVVSCS-------DSSDLLLHSIR 2150 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH----s~~Vt~VafSPDg~lLaSGS-------~DGtIrIWDLr 2150 (2342)
.|...+.-| ...|..-..+++.++++-.+ -.|.+.+|..+
T Consensus 137 -----------------------------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 137 -----------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp -----------------------------CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred -----------------------------CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 112222222 23455555666666655332 24678888875
Q ss_pred CCeEEEEEecCCcEEEEEecCCc-----EEEEEeCC---CeEEEEEeCCc---------eeeeecCC---CCCCeEEEEE
Q 000085 2151 RGRLIRRLVGVDAHAVSLSSEGV-----IMTWNKLQ---HTLSSFTLNGV---------LVARAKLP---LSGSIGCMEI 2210 (2342)
Q Consensus 2151 TGklIrsL~gh~vssLSfSpDG~-----IlVwdssd---GsI~I~dlnG~---------~L~s~~~~---Hs~~ItsLaf 2210 (2342)
.+ .-+.+.+|......+-.+|. ++.+..++ +.+++.++... ......++ -.+-..++.+
T Consensus 188 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 188 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp TC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred cc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 44 45667777766666655552 44444333 67888877321 00111111 1233344445
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
|+....+..-+ .-|-|++||+.|+.+++.-. -...+|.
T Consensus 267 s~kygviyviT-----------------------------------------K~G~i~lyDleTgt~i~~nr-Is~~~iF 304 (494)
T 1bpo_A 267 SEKHDVVFLIT-----------------------------------------KYGYIHLYDLETGTCIYMNR-ISGETIF 304 (494)
T ss_dssp ETTTTEEEEEE-----------------------------------------TTSEEEEEETTTCCEEEEEE-CCSSCEE
T ss_pred cccCCEEEEEe-----------------------------------------cCceEEEEecccceeeeeec-ccCCceE
Confidence 44444333322 24779999999999999887 4556777
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.-+-+.+..-++.....|.|.--.++.-
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EecccCCCCcEEEEccCceEEEEEEccc
Confidence 7776666666777788998888775544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.39 E-value=8.7 Score=45.00 Aligned_cols=61 Identities=5% Similarity=-0.056 Sum_probs=34.1
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeC-------CCeEEEEEeCC
Q 000085 2131 DLGVVVSCSDSS-----DLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKL-------QHTLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~DG-----tIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdss-------dGsI~I~dlnG 2191 (2342)
++.+++.|+.++ .+.+||+.+.+-...-. .......+...++.+++.+.. ...+..|++..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 566677777553 57788988776433211 111112222347788887643 23477777754
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.25 E-value=9.9 Score=44.62 Aligned_cols=62 Identities=6% Similarity=-0.038 Sum_probs=35.6
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeC---------CCeEEEEEeCCc
Q 000085 2131 DLGVVVSCSDS------SDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKL---------QHTLSSFTLNGV 2192 (2342)
Q Consensus 2131 Dg~lLaSGS~D------GtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdss---------dGsI~I~dlnG~ 2192 (2342)
++.+++.|+.+ ..+.+||+.+.+-...-. .......+...++.+++++.. ...+..|++...
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 56677777765 468899998876433211 111112223347788887643 344777877543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=91.18 E-value=1.2 Score=59.92 Aligned_cols=192 Identities=13% Similarity=-0.049 Sum_probs=102.9
Q ss_pred EEEEcCCCCEEEEE-EcCCcEEEEecCC----cccceecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCCcccc
Q 000085 2001 VVSITHDKEIITGG-HVDGSIKLLTSDG----AKTLETASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 2001 ~VafSpDGklLASG-S~DGsIrVWDl~t----gkll~tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~ 2074 (2342)
.++|++.+..|... ...+.|+.+++.+ ......+.........|++.+. ++++++-...+.|.+.++..... .
T Consensus 410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~ 488 (699)
T 1n7d_A 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-K 488 (699)
T ss_dssp CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-E
T ss_pred EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-E
Confidence 47888866655444 4567899999875 2222222222233566888754 45556656678899998876432 2
Q ss_pred ccccCCCCCCccccccCCCCCceeecCC---CccccccCC-ceEEe-cCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEE
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASAD---KSRRRRIEG-PIHVL-RGHHREILCCCVSSDLGV-VVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D---~s~~~~i~~-~l~~L-~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWD 2148 (2342)
.+..........+++.|.+..+....+. .+.+..... ....+ ...-...+.|+|++++.. .++-+..+.|.++|
T Consensus 489 ~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d 568 (699)
T 1n7d_A 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 568 (699)
T ss_dssp EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEc
Confidence 2222222345567778766655444432 222222221 12222 122344678999987554 45555677899999
Q ss_pred CCCCeEEEEEec-----CCcEEEEEecCCcEEEEEeCCCeEEEEEeC-Cceee
Q 000085 2149 IRRGRLIRRLVG-----VDAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVA 2195 (2342)
Q Consensus 2149 LrTGklIrsL~g-----h~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~ 2195 (2342)
+.... .+.+.. .....+++..+ .+++.+...+.|..++.. |..+.
T Consensus 569 ~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 569 VNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp SSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred cCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 86432 233321 11234455433 344444556788888753 44433
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=90.71 E-value=5.3 Score=50.49 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=74.5
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCccc----------c--eeccc------CCCCeEEEEecCC---CCEEEEEeCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKT----------L--ETASG------HCAPVTCLALSSD---SNFLVTGSQD 2059 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkl----------l--~tL~G------Ht~~VtcLAfSPD---G~~LaSGS~D 2059 (2342)
-+..+|+|++||..+ +..|.|..+..+.. + +++.- ...+|..+-|+|- |..|++-..|
T Consensus 70 qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD 148 (452)
T 3pbp_A 70 HVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED 148 (452)
T ss_dssp EEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred EEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC
Confidence 388999999999875 66888888763221 1 11211 2467999999995 5689999999
Q ss_pred CceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2060 TTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2060 GTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
++|++||+........ .+.. ......+..+...|.+++|..++=.+...+
T Consensus 149 ~~Ir~yDl~~s~~~P~------------~L~k------------------~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 149 DTITMFDILNSQEKPI------------VLNK------------------PNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp SCEEEEETTCTTSCCE------------EESC------------------CCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred CEEEEEEcccCCCCCc------------chhc------------------cccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 9999999987321110 0000 000111233447788999998766555544
Q ss_pred --CCCcEEEE
Q 000085 2140 --DSSDLLLH 2147 (2342)
Q Consensus 2140 --~DGtIrIW 2147 (2342)
.+|.|+-.
T Consensus 199 ~t~~GDIYAl 208 (452)
T 3pbp_A 199 TTEGGDIFAF 208 (452)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCCCEEEE
Confidence 77777654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=88.69 E-value=75 Score=42.07 Aligned_cols=157 Identities=8% Similarity=-0.087 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCC-EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC--CCceEEEeccCCcccc
Q 000085 1998 SSAVVSITHDKE-IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSR 2074 (2342)
Q Consensus 1998 Svt~VafSpDGk-lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~ 2074 (2342)
....+++.+.+. +.++-...+.|.+.++++......+...-..-..|++.|...+|+-... .+.|...++.... ..
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~ 159 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RT 159 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eE
Confidence 344588887655 5555556788999998754332222233455689999986555555443 3556666655432 11
Q ss_pred ccccCCCCCCccccccCCCCCceeecCCC--ccccccC-CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2075 TGTIEPSSGMGTPGNSIGSSTPANASADK--SRRRRIE-GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2075 t~~~~~~~~V~svs~SpDG~~Las~s~D~--s~~~~i~-~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
.. .........+++++++..+....... +...+.. .....+.........+++.. +.+.++-...+.|...|..+
T Consensus 160 ~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 160 TL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp EE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred EE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCC
Confidence 11 11223445677777666554443322 2222221 11233333344556777764 44555555678899999877
Q ss_pred CeEEEE
Q 000085 2152 GRLIRR 2157 (2342)
Q Consensus 2152 GklIrs 2157 (2342)
|+....
T Consensus 238 g~~~~~ 243 (628)
T 4a0p_A 238 GQNRTI 243 (628)
T ss_dssp CCSCEE
T ss_pred CCceEE
Confidence 754433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=8.8 Score=44.69 Aligned_cols=146 Identities=8% Similarity=-0.042 Sum_probs=80.5
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCC--------eEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAP--------VTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~--------VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
.....++|+|+|.+.++ .+|.++-.+..+.... ...+-... -.++.|.|+|.+.++ .||.|.-|+-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 34457999999997776 6787766665442221 11111112 378899999987777 56888766543
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWD 2148 (2342)
+... ..|.-. -..+-.+--..+.+|.|.|+|.+.+.. ||.++-+.
T Consensus 116 ~~~~--------------------------------~~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 116 QSDT--------------------------------DNWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp CSTT--------------------------------CCHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred cCCC--------------------------------Cceecc-ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 2110 001000 011111122467899999999877665 77765443
Q ss_pred CCCCe------EEEEEe---cCCcEEEEEecCCcEEEEEeCCCeE
Q 000085 2149 IRRGR------LIRRLV---GVDAHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2149 LrTGk------lIrsL~---gh~vssLSfSpDG~IlVwdssdGsI 2184 (2342)
.-++. ....+- .+.-+.+.++++|.+.... ++.+
T Consensus 161 ~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 161 PPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp CCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 32211 011111 1223566788888877666 6643
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.89 E-value=14 Score=44.95 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=36.3
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe----E--EEEE-ec-CCcEEEEEecCCcEEEEEe
Q 000085 2121 REILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR----L--IRRL-VG-VDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2121 ~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk----l--IrsL-~g-h~vssLSfSpDG~IlVwds 2179 (2342)
.....++| .+|.++++.-..+.|...++.... . ...+ .. .....+++.|||.+++.+.
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 34567777 467766666667778777765332 1 1222 11 2367888899998877764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=87.50 E-value=18 Score=44.72 Aligned_cols=167 Identities=10% Similarity=0.091 Sum_probs=91.3
Q ss_pred CeEEEEEecCCCEEEEEe------------CCCcEEEEECCC--CeEE-EEEecC-------CcEEEEEec--CCc--EE
Q 000085 2122 EILCCCVSSDLGVVVSCS------------DSSDLLLHSIRR--GRLI-RRLVGV-------DAHAVSLSS--EGV--IM 2175 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS------------~DGtIrIWDLrT--GklI-rsL~gh-------~vssLSfSp--DG~--Il 2175 (2342)
..-.+.+.++|..+++++ .+|.|.++|..+ ++.. -.+.+. ...-+.+.+ +|. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 345666778765555542 689999999873 3321 123221 134455544 564 55
Q ss_pred EEEeC--CCeEEEEEeC--Cceee---eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc
Q 000085 2176 TWNKL--QHTLSSFTLN--GVLVA---RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248 (2342)
Q Consensus 2176 Vwdss--dGsI~I~dln--G~~L~---s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs 2248 (2342)
+.+.. ...+.+|.++ +.... ...-..-...+.+.+.++|.+.++... +..+..+...
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~------~ftd~~~~~~---------- 194 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDH------YFIDPYLKSW---------- 194 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESC------SCSSHHHHHH----------
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCc------EeCCcccccc----------
Confidence 55544 4567777764 22221 111112356899999999998886531 1100000000
Q ss_pred cccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 000085 2249 LASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2249 pd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
+.. .....|.|+.+|..+.+.+ .. .-..-+.++|+||+++|+++. ..+.|..|+..
T Consensus 195 -e~~-------~~~~~g~vyr~d~~~~~~~--~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 195 -EMH-------LGLAWSFVTYYSPNDVRVV--AE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp -HHH-------TTCCCEEEEEECTTCCEEE--EE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred -hhh-------ccCCccEEEEEECCeEEEe--ec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 000 0012456777766432222 11 123568999999998888764 57899999964
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=40 Score=41.21 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=40.4
Q ss_pred CCeEEEEEe-------cCCCEEEEEeCCCcEEEEECCCC-eEE--EEEec---CCcEEEEEecCCcEEEEEe
Q 000085 2121 REILCCCVS-------SDLGVVVSCSDSSDLLLHSIRRG-RLI--RRLVG---VDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2121 ~~Vt~VafS-------PDg~lLaSGS~DGtIrIWDLrTG-klI--rsL~g---h~vssLSfSpDG~IlVwds 2179 (2342)
.....++|. .+|.++++.-..+.|...++... ... ..+.. .....+++.|||.+++.+.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 457788884 46777777767778888888753 332 23321 2467889999998888764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.97 E-value=20 Score=41.83 Aligned_cols=62 Identities=5% Similarity=-0.077 Sum_probs=36.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCC-----CeEEEEEeCCc
Q 000085 2131 DLGVVVSCSDS-----SDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNGV 2192 (2342)
Q Consensus 2131 Dg~lLaSGS~D-----GtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG~ 2192 (2342)
++.+++.|+.+ ..+.+||+.+.+-...-. .......+...++.+++.+..+ ..+.+|++...
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 56667777654 468899988875443211 1111122233477888887653 45778887643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=85.88 E-value=19 Score=42.34 Aligned_cols=61 Identities=3% Similarity=-0.102 Sum_probs=33.8
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEe--cCCcEEEEEecCCcEEEEEeCC-----CeEEEEEeCC
Q 000085 2131 DLGVVVSCSDS-----SDLLLHSIRRGRLIRRLV--GVDAHAVSLSSEGVIMTWNKLQ-----HTLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~D-----GtIrIWDLrTGklIrsL~--gh~vssLSfSpDG~IlVwdssd-----GsI~I~dlnG 2191 (2342)
++.+++.|+.+ ..+.+||+.+.+-...-. .......+..-++.+++++..+ ..+..|++..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 55666666643 368889988775433211 1111111222377888887543 4577787754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=84.52 E-value=26 Score=50.33 Aligned_cols=186 Identities=9% Similarity=0.081 Sum_probs=98.0
Q ss_pred CCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCE-EEEEEcCCcEEEEecCC-cccceec
Q 000085 1957 GKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEI-ITGGHVDGSIKLLTSDG-AKTLETA 2034 (2342)
Q Consensus 1957 Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGkl-LASGS~DGsIrVWDl~t-gkll~tL 2034 (2342)
.+.+++.-.+.+++||+..+..+.....++. .|..-.|-.+..+ |+| +..|+.|++.+ ..+++.+
T Consensus 76 ~~~iiALrag~~lQiFnl~~k~klks~~~~e----------~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 76 ASKVIALKAGKTLQIFNIEMKSKMKAHTMTD----------DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred CcceEEEecCCeEEEeehHHhhhhcccccCC----------CceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHH
Confidence 3344455568899999976643333333322 1223445444443 333 57899999974 3455555
Q ss_pred ccC----CCCeEEEEecCCCCEEEEEe-------CCCceEEEeccCCccccccccCCC------------CCCcccccc-
Q 000085 2035 SGH----CAPVTCLALSSDSNFLVTGS-------QDTTILLWRIHRAFTSRTGTIEPS------------SGMGTPGNS- 2090 (2342)
Q Consensus 2035 ~GH----t~~VtcLAfSPDG~~LaSGS-------~DGTVrVWDl~tg~~i~t~~~~~~------------~~V~svs~S- 2090 (2342)
..| ...|..-..+++.++++-.| -.|.+.++.++...... ..+|. ....-++|.
T Consensus 143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~--iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP--IEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh--hhHhHhhhheeccCCCCCCceEEEEEE
Confidence 555 35677778888888876433 35788899887643211 11111 111111111
Q ss_pred --CCCCCc-eeecCCC-cccccc-CCceEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2091 --IGSSTP-ANASADK-SRRRRI-EGPIHVLRG---HHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2091 --pDG~~L-as~s~D~-s~~~~i-~~~l~~L~G---Hs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
+.|..+ +.-.... ...... .+.+..+.. -.+-..++.+++....+..-+.-|.|.++|+.||.++..
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 111111 0000000 000000 001111111 123345677788888888899999999999999988754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=84.05 E-value=33 Score=49.33 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=44.0
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCC-EEEEEeCCCceEEEeccC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSN-FLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~-~LaSGS~DGTVrVWDl~t 2069 (2342)
.-.+|..++||--. ..++.|+|+++...+.+..-. ..|.--.|-.+.. -||| +..|.-|++..
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT---~~aVyHW~~~~ 134 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT---DNAVYHWSMEG 134 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEc---CCeEEEeccCC
Confidence 34578788777664 789999999988777766543 4577777764432 2343 56799999965
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=83.99 E-value=45 Score=40.65 Aligned_cols=64 Identities=8% Similarity=0.185 Sum_probs=43.1
Q ss_pred CCeEEEEEec-------CCCEEEEEeCCCcEEEEECCCCeEEEE--Ee-c--CCcEEEEEecCCcEEEEEe-CCCeE
Q 000085 2121 REILCCCVSS-------DLGVVVSCSDSSDLLLHSIRRGRLIRR--LV-G--VDAHAVSLSSEGVIMTWNK-LQHTL 2184 (2342)
Q Consensus 2121 ~~Vt~VafSP-------Dg~lLaSGS~DGtIrIWDLrTGklIrs--L~-g--h~vssLSfSpDG~IlVwds-sdGsI 2184 (2342)
..+..++|.. ++.++++.-..+.|...++..++.+.. +- . .....+++.|||.+++.+. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 4677888864 467777777778888888876654433 21 1 2467889999999887643 44544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.56 E-value=55 Score=38.53 Aligned_cols=61 Identities=8% Similarity=-0.054 Sum_probs=35.0
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCeEEEE--EecCCcEEEEEecCCcEEEEEeC-C-----CeEEEEEeCC
Q 000085 2131 DLGVVVSCSDS--------SDLLLHSIRRGRLIRR--LVGVDAHAVSLSSEGVIMTWNKL-Q-----HTLSSFTLNG 2191 (2342)
Q Consensus 2131 Dg~lLaSGS~D--------GtIrIWDLrTGklIrs--L~gh~vssLSfSpDG~IlVwdss-d-----GsI~I~dlnG 2191 (2342)
++.+++.|+.+ ..+.+||+.+.+-... +........+...++++++++.. + ..+..|+...
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 55666666632 4688999988754322 11111222233367788888765 1 3577888764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=83.55 E-value=38 Score=43.04 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=62.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE--EEec--------CCcEEEEEec----CCcEEEEEeC-----
Q 000085 2120 HREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR--RLVG--------VDAHAVSLSS----EGVIMTWNKL----- 2180 (2342)
Q Consensus 2120 s~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr--sL~g--------h~vssLSfSp----DG~IlVwdss----- 2180 (2342)
-...+.++|.|+|+++++-...+.|++++..++.... .+.. .....++++| +|.+++....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456899999999977765544579888876665432 2221 1234789999 6777776643
Q ss_pred -------CCeEEEEEeCCc--e------eee-ecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2181 -------QHTLSSFTLNGV--L------VAR-AKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2181 -------dGsI~I~dlnG~--~------L~s-~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
...|..|..+.. . +.. ...........|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666665321 1 111 1111123578999999998877665
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=83.06 E-value=30 Score=43.88 Aligned_cols=160 Identities=11% Similarity=0.098 Sum_probs=93.2
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccC----CCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGH----CAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GH----t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
...+.+|.-++.. .++.||.-++..+...+.+.-- -+.|..+..+|+|++|+..+ +.+|.|-.+..+.......
T Consensus 26 ~~~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccc
Confidence 3445566655554 3689999888754444444332 23588899999999998875 5588888876421110000
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCe-
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD---LGVVVSCSDSSDLLLHSIRRGR- 2153 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD---g~lLaSGS~DGtIrIWDLrTGk- 2153 (2342)
.....+ ....+.++.. . .....+|..+.|+|- +..+++-..|++|++||+....
T Consensus 104 -~~~~~~------------------q~~ty~l~~~-~--~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~ 161 (452)
T 3pbp_A 104 -SIQDAF------------------QIFHYSIDEE-E--VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE 161 (452)
T ss_dssp -HHHHTT------------------EEEEEEGGGC-C----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS
T ss_pred -cccccc------------------ceeEEEcCCc-c--cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC
Confidence 000000 0000111110 0 113678999999985 5689999999999999998532
Q ss_pred -EEEEEe------c-----CCcEEEEEecCCcEEEEEe--CCCeEEE
Q 000085 2154 -LIRRLV------G-----VDAHAVSLSSEGVIMTWNK--LQHTLSS 2186 (2342)
Q Consensus 2154 -lIrsL~------g-----h~vssLSfSpDG~IlVwds--sdGsI~I 2186 (2342)
.. .+. + .++..+||+.+|-.+..-+ +.|.|+.
T Consensus 162 ~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 162 KPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred CCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 22 222 1 3467888988765444423 4566543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.26 E-value=22 Score=43.68 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=68.0
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccC-CCCeEEEEe--cC-CCCEEEEE-eCCCceEEEeccCCccccccccCCCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGH-CAPVTCLAL--SS-DSNFLVTG-SQDTTILLWRIHRAFTSRTGTIEPSSGM 2084 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GH-t~~VtcLAf--SP-DG~~LaSG-S~DGTVrVWDl~tg~~i~t~~~~~~~~V 2084 (2342)
+++.|+.||.|.-.|..+|+.+-++... ..++....- .+ ++..++.. +.||.+..++..++.......
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~------- 84 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLS------- 84 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEE-------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeec-------
Confidence 6778889999999999999887766543 122222110 01 22333333 589999888877652211110
Q ss_pred ccccccCCCCCceeecCCCccccccCCce--EEecCCCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 000085 2085 GTPGNSIGSSTPANASADKSRRRRIEGPI--HVLRGHHREIL-CCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV 2161 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s~~~~i~~~l--~~L~GHs~~Vt-~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh 2161 (2342)
+...+ .-+.+...+|. ..--+..+..+++|+.+|.+...|+++|+.+..+...
T Consensus 85 ------------------------~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 85 ------------------------IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp ------------------------HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ------------------------cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 00000 00011111111 0000014567899999999999999999999998643
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=81.77 E-value=30 Score=43.94 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=21.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 2040 PVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
.-+.++|.|+|+++|+-...+.|.+++..+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence 467999999999887754445677776543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=80.41 E-value=1e+02 Score=36.97 Aligned_cols=88 Identities=9% Similarity=-0.038 Sum_probs=54.8
Q ss_pred EEecCCCEEEEEe----CCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeC-CCeEEEEEeCCceeeeecCCC
Q 000085 2127 CVSSDLGVVVSCS----DSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKL-QHTLSSFTLNGVLVARAKLPL 2201 (2342)
Q Consensus 2127 afSPDg~lLaSGS----~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdss-dGsI~I~dlnG~~L~s~~~~H 2201 (2342)
.|+++++.|+-.. .+..|+.-++.. .....+..+.. ..++++|..+.|... ...|...+++|.......
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~--- 183 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY--- 183 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE---
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe---
Confidence 5677888887665 344566666653 33444444433 467889999998866 467777787776544332
Q ss_pred CCCeEEEEEccCCCEEEEEe
Q 000085 2202 SGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSGS 2221 (2342)
.+... ..++|++.+|+-..
T Consensus 184 ~~~~~-~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 184 DCNCY-KPVVLDDTNVYYMD 202 (302)
T ss_dssp CSCEE-EEEEEETTEEEEEE
T ss_pred CCCcc-ceeeecCCEEEEEE
Confidence 22232 34668898888654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2342 | ||||
| d1t77a1 | 304 | a.169.1.1 (A:2186-2489) Lipopolysaccharide-respons | 1e-145 | |
| d1t77a2 | 110 | b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsi | 2e-26 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.003 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-04 |
| >d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 304 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BEACH domain superfamily: BEACH domain family: BEACH domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Score = 451 bits (1161), Expect = e-145
Identities = 167/300 (55%), Positives = 218/300 (72%), Gaps = 2/300 (0%)
Query: 1580 PHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWI 1639
P I LA+ P QL K + + +RW EISNFEYLM LNT+AGRSYND+ QYPVFPW+
Sbjct: 7 PQTRRISLAS--PRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWV 64
Query: 1640 LSDYSSENLDLANPSSYRDLSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAG 1699
+++Y SE LDL P+++RDLSKP+GALNP + F ERY S++D +PKFHYG+HYS+A
Sbjct: 65 ITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTAS 124
Query: 1700 TVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWNGVLEDMSDVKELVPELFYLPE 1759
VL +L R+EPFTT + LQGGKFDHADR FS I+ W D SD+KEL+PE +YLPE
Sbjct: 125 FVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPE 184
Query: 1760 ILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIFG 1819
+ N N+ + G G + V LPPWA+ +F+H +R+ALES++VS LH+W+DLIFG
Sbjct: 185 MFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFG 244
Query: 1820 YKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKK 1879
YKQ+G EA+ A NVF+Y+TYEG V+++ I+DPV + A + QI FGQTPSQLL PH +
Sbjct: 245 YKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 304
|
| >d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: PreBEACH PH-like domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (258), Expect = 2e-26
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 1475 IVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQE---KDRSWLMSS 1531
+ P+ +V P V++GT VT+ + F VD + + WL +
Sbjct: 3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTE 62
Query: 1532 LHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRNAYRAI 1574
+ I+SRRYLL+ +ALE+FM +R F+F + +
Sbjct: 63 IRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFL 105
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.9 bits (177), Expect = 6e-14
Identities = 45/306 (14%), Positives = 94/306 (30%), Gaps = 26/306 (8%)
Query: 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT--GTIEPSSGMGTPGNS 2090
SGH +PVT + + +V+ S+D TI +W RT G + + +
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 2091 IGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150
++ + K + I + GH + + + +VS S + + ++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 2151 RGRLIRRLVGVDAHA------------VSLSSEGVIMTWNKLQHT-LSSFTLNGVLVARA 2197
G ++ G S S++ + W + + +V
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 2198 KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDL-ASDQSVD 2256
S + + + G +GS D + +G L D V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251
Query: 2257 NNRFDFPSP---------SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307
F ++ D + L +T+L +K ++ + D
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVD 310
Query: 2308 KQLIVF 2313
+ + V+
Sbjct: 311 QTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.1 bits (157), Expect = 2e-11
Identities = 23/177 (12%), Positives = 41/177 (23%), Gaps = 40/177 (22%)
Query: 1964 ASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLL 2023
A+ + P + + S S + G D +IK+
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232
Query: 2024 TSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSG 2083
L T GH V + S F+++ + D T+ +W +
Sbjct: 233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY------KNKR------ 280
Query: 2084 MGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD 2140
+ L H + VV+ S
Sbjct: 281 ----------------------------CMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.2 bits (139), Expect = 4e-09
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ 2058
V+ + K I++ D ++++ + ++T + H VT L + ++VTGS
Sbjct: 251 RGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 2059 DTTILLW 2065
D T+ +W
Sbjct: 310 DQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.4 bits (137), Expect = 8e-09
Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 22/186 (11%)
Query: 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065
+ + I D +IK+ ++T +GH V + + D + + S D T+ +W
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 2066 RIHR-----------------AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108
+ ++ + S G+ G P S + + +
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 2109 IEG-----PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDA 2163
+ + L GH + S ++SC+D L + + R ++ L +
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 290
Query: 2164 HAVSLS 2169
SL
Sbjct: 291 FVTSLD 296
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.3 bits (103), Expect = 1e-04
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 2112 PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160
+ L GH + V+VS S+ + + + G R L G
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG 57
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.4 bits (155), Expect = 4e-11
Identities = 27/131 (20%), Positives = 39/131 (29%), Gaps = 4/131 (3%)
Query: 2014 GHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILL-WRIHRAFT 2072
G D S KL +T +GH + + + + N TGS D T L
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 2073 SRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR---RRIEGPIHVLRGHHREILCCCVS 2129
G+ + S D + VL GH + C V+
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 2130 SDLGVVVSCSD 2140
D V + S
Sbjct: 322 DDGMAVATGSW 332
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.4 bits (150), Expect = 2e-10
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
VS + ++ G+ D + + + A +GH V+CL ++ D + TGS D+
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 2062 ILLW 2065
+ +W
Sbjct: 336 LKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.3 bits (116), Expect = 4e-06
Identities = 35/305 (11%), Positives = 76/305 (24%), Gaps = 31/305 (10%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR-----------------AF 2071
+T T GH A + + +DS LV+ SQD +++W + A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD 2131
+ + N + +I+ +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 2132 LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNG 2191
+ + + L VS + + W+ +
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-----VREGMCRQ 220
Query: 2192 VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLAS 2251
I + +G++ G + ++ Q L + + S
Sbjct: 221 TFTGH-----ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 2252 DQSVDNNRFDFPSP---SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADK 2308
+ R + D VL G ++ L + D + + D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 2309 QLIVF 2313
L ++
Sbjct: 335 FLKIW 339
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.2 bits (136), Expect = 1e-08
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 1990 AFASSGIRSSAVVSITHDKEIITGGHVDGSIKL--LTSDGAKTLETASGHCAPVTCLALS 2047
A+ S + + + D+ I + + + + + + H VT + +
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 2048 SDSNFLVTGSQDTTILLWRIH 2068
DSN +VT D +W +
Sbjct: 61 PDSNRIVTCGTDRNAYVWTLK 81
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.0 bits (120), Expect = 1e-06
Identities = 11/106 (10%), Positives = 27/106 (25%), Gaps = 38/106 (35%)
Query: 2035 SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSS 2094
S P++C A + D + + + ++
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK------SGNKWVQ-------------- 43
Query: 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD 2140
+H L+ H+ ++ + D +V+C
Sbjct: 44 ------------------VHELKEHNGQVTGVDWAPDSNRIVTCGT 71
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 1e-08
Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 28/177 (15%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKT-------LETASGHCAPVTCLALSSDSNFLV 2054
VS K I G D ++++ S+ E+ +GH V + + D +V
Sbjct: 212 VSPGDGKYIAAGSL-DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 2055 TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN-----------SIGSSTPANASADK 2103
+GS D ++ LW + A S + + S D+
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 2104 SRR---RRIEGPIHVLRGHHREILCCCV------SSDLGVVVSCSDSSDLLLHSIRR 2151
++ P+ +L+GH ++ V + V + S + ++
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (103), Expect = 1e-04
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 23/112 (20%)
Query: 2028 AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTP 2087
L + H + V C+ S+D +L TG + T ++R+ +
Sbjct: 52 DVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLS---------- 100
Query: 2088 GNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS 2139
+S + P N + I C S D + + +
Sbjct: 101 DDSAANKDPENLN------------TSSSPSSDLYIRSVCFSPDGKFLATGA 140
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 2e-08
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTT 2061
+ + + D + + ++ S + V +S D ++VTGS D
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 2062 ILLWRI 2067
++ +
Sbjct: 330 ATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 9e-05
Identities = 28/307 (9%), Positives = 70/307 (22%), Gaps = 14/307 (4%)
Query: 2017 DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG 2076
D I A+ + T H V + +S+ + + TG + +W I
Sbjct: 31 DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88
Query: 2077 TIEPSSGMGTPGNSIGSSTPAN--ASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV 2134
+ S ++ I E+ +
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 2135 VVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV 2194
+ S + + + + L + L+ +
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Query: 2195 ARAKLPLSGSIGC------MEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD 2248
+ + + V S+N + + E
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268
Query: 2249 LASDQSVDNNRFDFPSP--SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306
L+ + F + + E + + ++ D+ ++ +
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISVDDKYIVTGSG 326
Query: 2307 DKQLIVF 2313
DK+ V+
Sbjct: 327 DKKATVY 333
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.3 bits (123), Expect = 3e-07
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075
+ GH +T L+ S+D L + + I W I ++R
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 49
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 7e-05
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 2006 HDKEIITGGHVDGSIKL--LTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTIL 2063
+ + TG D S+ + + + H + + +V+ QD+ I
Sbjct: 235 DNVRLATGSL-DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 2064 LWRI 2067
W +
Sbjct: 294 FWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 4e-04
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 2113 IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVS 2167
V GH++ I S+D + S + I G R V A ++
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.9 bits (122), Expect = 4e-07
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 2001 VVSITHDKEIITGGHVDGSIKLL-TSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD 2059
+++++ G +D +I + K ++ + H V L + + LV+ D
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGAD 278
Query: 2060 TTILLWRI 2067
I W +
Sbjct: 279 ACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.2 bits (115), Expect = 2e-06
Identities = 45/298 (15%), Positives = 83/298 (27%), Gaps = 28/298 (9%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPG 2088
+ L+T SGH +T L ++ L++GS D I+ W + I
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLI---------- 49
Query: 2089 NSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHS 2148
S+ +S A + S ++ + ++D V +D L+L S
Sbjct: 50 VSLDNS-KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108
Query: 2149 IRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCM 2208
+ + AVSLS V + + + + K PL +
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168
Query: 2209 EISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSP--- 2265
IS G + + S+ + A +
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228
Query: 2266 ---------SICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314
+I + + L +T L+ S AD + +
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 1e-06
Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 41/214 (19%)
Query: 2030 TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089
T H A + ++ + +F V+ S D + +W
Sbjct: 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDN---------------------- 41
Query: 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS--DLGVVVSCSDSSDLLLH 2147
+ + + +H HH ++L +L +V + S S DLL +
Sbjct: 42 -------KLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 94
Query: 2148 SIRRGRLIRRLVGVDAHAVSLSSEG---VIMTWNK-----LQHTLSSFTLNGVLVARAKL 2199
I R ++++ + + + W L H L + + G
Sbjct: 95 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 154
Query: 2200 PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233
P + + ++ L G S +
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 0.002
Identities = 23/188 (12%), Positives = 47/188 (25%), Gaps = 28/188 (14%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMG--- 2085
T+E+ T + +S + TG + T+ + + + S
Sbjct: 175 GTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 2086 --TPGNSIGSSTPANASADK-------------------SRRRRIEGPIHVLRGHHREIL 2124
+ S S A A S H ++
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 2125 CCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTL 2184
+ + S L ++ I L H + E I+ ++ +L
Sbjct: 294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM---HCDDIEIEEDILAVDEHGDSL 350
Query: 2185 SSFTLNGV 2192
+ + V
Sbjct: 351 AEPGVFDV 358
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 2e-06
Identities = 5/70 (7%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPG 2088
+ ++ ++ + + + L+ S D ++ +++ ++ + S P
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI--QAKNVDLLQSLRYKHPL 59
Query: 2089 NSIGSSTPAN 2098
+
Sbjct: 60 LCCNFIDNTD 69
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 1e-04
Identities = 16/146 (10%), Positives = 41/146 (28%), Gaps = 19/146 (13%)
Query: 1937 RHNWQPNTPDGQGTPFLFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGI 1996
+ + ++ DG+ F + + R + + + ++ F
Sbjct: 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK-DTNLAYPVNSIEF----- 259
Query: 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTG 2056
+ + + DG I K ++ + + + ++ N L
Sbjct: 260 --------SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLA 310
Query: 2057 SQDTTILLWRIHRAFTSRTGTIEPSS 2082
+ D T +T + SS
Sbjct: 311 TSDDTFKTNAA----IDQTIELNASS 332
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.8 bits (109), Expect = 2e-05
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 1999 SAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ 2058
+ V+ T + I + S+ + E + H T S + +G
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 2059 DTTILLWRIH 2068
+ +W
Sbjct: 79 HGNVRIWDTT 88
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.2 bits (97), Expect = 6e-04
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGH-CAPVTCLALSSDSNFLVTGSQDTTILL 2064
+I + D +IK+ K +T L + LV+ S + I
Sbjct: 249 DGTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 2065 W 2065
Sbjct: 308 V 308
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 2e-05
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 2006 HDKEIITGGHVDGSIKL---------LTSDGAKTLETASGHCAPVTCLALSSDSNFLVTG 2056
D + I G DG IK+ G L T H V L D +V+
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 283
Query: 2057 SQDTTILLW 2065
S D TIL+W
Sbjct: 284 SHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 9e-05
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068
+ + S V CL D +V+G +D TI +W +
Sbjct: 6 QRIHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKN 43
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 2e-05
Identities = 7/68 (10%), Positives = 16/68 (23%), Gaps = 3/68 (4%)
Query: 1999 SAVVSITHDKEIITGGHVDGSIKLL-TSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS 2057
SA+ + I+ G + + G + + +
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342
Query: 2058 QDTTILLW 2065
+D L
Sbjct: 343 KDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 4e-04
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 3/111 (2%)
Query: 1998 SSAVVSI--THDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT 2055
++V++ D +ITG D I++ S K L SGH V L + +
Sbjct: 12 MTSVITCLQFEDNYVITGAD-DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG 70
Query: 2056 GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR 2106
+ T + T + S D +
Sbjct: 71 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 0.002
Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 2114 HVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDA--HAVSLSSE 2171
LRGH ++ C+ + V++ +D + ++ + + +L G D A+ +
Sbjct: 6 TTLRGHMTSVI-TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 2172 GVIMT 2176
G++++
Sbjct: 65 GILVS 69
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 8e-05
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 9/164 (5%)
Query: 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH-----RAFTSRTGTI---EP 2080
K+ + GH V L N +V+GS D T+ +W R TG + +
Sbjct: 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65
Query: 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD 2140
+ G++ + NA + V H E S D + V +
Sbjct: 66 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125
Query: 2141 SSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTL 2184
+ L + +R + VS + + ++ W+ T
Sbjct: 126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 169
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 6e-04
Identities = 44/319 (13%), Positives = 90/319 (28%), Gaps = 15/319 (4%)
Query: 1998 SSAVVSITH--DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVT 2055
V++ I++G D ++K+ ++ K L T GH V + + +
Sbjct: 16 DDHVITCLQFCGNRIVSGSD-DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74
Query: 2056 GSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHV 2115
+ + + G M + S + +HV
Sbjct: 75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG--QCLHV 132
Query: 2116 LRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIM 2175
L GH + C VVS + + + + L G SL +G+ +
Sbjct: 133 LMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV 190
Query: 2176 TWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235
L ++ + + + L + + G S+ Q
Sbjct: 191 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--MELKDNILVSGNADSTVKIWDIKTGQ 248
Query: 2236 GLNSKQSGTEDFDLASDQSVDNNRFDFPSP--SICFLDLHTLKVFHVLKL----GEGQDI 2289
L + Q + + + N S ++ DL T + L G G +
Sbjct: 249 CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 308
Query: 2290 TALALNKDNTNLLVSTADK 2308
+ + V + +
Sbjct: 309 WRIRASNTKLVCAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.003
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 2014 GHVDGSIKL---LTSDGAKTLET--ASGHCAPVTCLALSSDSNFLVTGSQDTT----ILL 2064
DG++KL T + + L T + G V + S+ GS++ T +L+
Sbjct: 276 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Query: 2065 W 2065
Sbjct: 336 L 336
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 9e-05
Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 6/160 (3%)
Query: 1918 ASSDTVVIVDMNAPAAHIARHNWQPNTPDG-QGTPFLFQHGKASASPASGTFLRMFKGPG 1976
S ++ +P G+P + S + +G +
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255
Query: 1977 GSGAD-EWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035
S + + R + S I +V G G + K +
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----T 311
Query: 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075
+T L LS+D ++ D I + + + RT
Sbjct: 312 EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 2e-04
Identities = 8/65 (12%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 2006 HDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALS---SDSNFLVTGSQDTTI 2062
++ T G D +I++ +K ++ + + + + + +++ S D T+
Sbjct: 262 DSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320
Query: 2063 LLWRI 2067
+ +
Sbjct: 321 NFYEL 325
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2342 | |||
| d1t77a1 | 304 | Lipopolysaccharide-responsive and beige-like ancho | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.93 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.93 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.91 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.88 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.88 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.88 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.84 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.81 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.8 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.8 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.8 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.79 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.76 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.76 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.74 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.74 | |
| d1t77a2 | 110 | Lipopolysaccharide-responsive and beige-like ancho | 99.72 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.65 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.61 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.59 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.56 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.54 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.51 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.46 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.46 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.43 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.26 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.19 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.99 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.88 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.63 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.55 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.51 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.49 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.48 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.41 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.4 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.37 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.35 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.23 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.16 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.16 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.04 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.94 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.86 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.76 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.73 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.65 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.64 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.38 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.07 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.03 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.72 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.17 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.17 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.31 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.3 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 91.85 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 91.09 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 91.05 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.93 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 90.72 | |
| d1zsqa1 | 125 | Myotubularin-related protein 2, N-terminal domain | 90.62 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 90.58 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.09 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 88.74 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 87.69 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 84.67 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 84.39 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 83.32 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 81.3 |
| >d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BEACH domain superfamily: BEACH domain family: BEACH domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-97 Score=875.60 Aligned_cols=299 Identities=55% Similarity=1.024 Sum_probs=291.0
Q ss_pred CCCCccccccccChHHHHHHHHHHHhcccCCCChHHHHHHHHHHhcCCcCCCCCCcccceeccCCCCCccCCCCCCcccc
Q 000085 1579 PPHLNDIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLANPSSYRD 1658 (2342)
Q Consensus 1579 ~~~~~~~~~~~~~~~~~~~~~~~t~~W~~g~ISNFeYLm~LN~~aGRS~nDl~QYPVFPWIl~dy~s~~ldL~~p~~~RD 1658 (2342)
.|+...+ ....|.+++++.++|++|++|+||||||||+||.+|||||||++||||||||++||+|+++||+|+.+|||
T Consensus 6 ~p~~~~~--~~~~p~~~~~~~~~t~kW~~g~iSNfeYLm~LN~~sGRSf~D~~qYPIfPWVi~dy~s~~ldl~~~~~~RD 83 (304)
T d1t77a1 6 LPQTRRI--SLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRD 83 (304)
T ss_dssp CCCCTTT--TTCCHHHHHHHCSHHHHHHTTSSCHHHHHHHHHHHHTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCC
T ss_pred CCcccee--cccCHHHHHHHhhHHHHHHcCCCcHHHHHHHHHHHhCCCCCCcccCcccCeeeccCCcccccccCcccccc
Confidence 3555433 45569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCHHHHHHHHHHhccCCCCCCCCCcccCCCCChhhHHhhhccCCCchhhhHhhhCCCCCCCCcccchHHHHHh
Q 000085 1659 LSKPVGALNPDQLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFSDIAATWN 1738 (2342)
Q Consensus 1659 LsKPiGal~~~r~~~~~~ry~~~~d~~~~~f~ygshyS~~~~V~~yL~R~ePft~l~i~lQ~g~fD~~dR~F~SI~~~w~ 1738 (2342)
|+||||+||++|++.+++||+++.+...++||||+|||++++|++||+|+||||++|+.+|+|+||++||+|+||.++|+
T Consensus 84 Lskpig~l~~~r~~~~~~~~~~~~~~~~~~~~y~s~yS~~~~V~~~L~R~ePft~l~~~lq~g~fD~~~R~F~si~~~~~ 163 (304)
T d1t77a1 84 LSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWR 163 (304)
T ss_dssp TTSCHHHHCHHHHHHHHHHHHHCCCSSSCCCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHH
T ss_pred CCCchhccCHHHHHHHHHHHHhcccCCCCCcccCCCCCChhHHHHHHhcCCchhHHHHHhhcCcccCCccccccHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcccccccccccccccccCCCCCcccccCCCcCCCccCCCCCCChHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 000085 1739 GVLEDMSDVKELVPELFYLPEILTNENSIDFGTTQLGGKLDSVGLPPWAENPVDFIHKHRMALESDYVSAHLHEWVDLIF 1818 (2342)
Q Consensus 1739 ~~~~~~~dvkELIPEfFy~Pefl~N~n~~~lG~~q~g~~v~dV~LP~Wa~~p~~FI~~~R~aLES~~VS~~Lh~WIDLIF 1818 (2342)
++..+++|++||||||||+||||.|.|+|+||++|+|+.|+||+||+||++|++||++||+||||+|||++||+||||||
T Consensus 164 ~~~~~~~d~~EliPEFf~~Pe~f~n~n~~~~g~~~~g~~v~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLiF 243 (304)
T d1t77a1 164 NSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIF 243 (304)
T ss_dssp HHHHCTTCCCCBCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCCTTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHT
T ss_pred HhcccccchhhcCchhhcChHhhhhccccccccccCCCcccccccCCccCCcHHHHHHHHHHHhchHHHhHhhhhHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhhhcCccccccccccccccccCCCHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000085 1819 GYKQRGKEAISANNVFFYITYEGTVDIDKISDPVQQRAAQDQIAYFGQTPSQLLTVPHMKK 1879 (2342)
Q Consensus 1819 GyKQ~G~~Av~a~Nvf~~~tY~~~vd~~~i~d~~~~~~~~~~i~~fGq~P~QLF~~pHp~R 1879 (2342)
||||+|++|++|.|||||++|++.++.+.++|+.++.+++.++.+|||+|.|||++|||+|
T Consensus 244 G~kq~G~~A~~a~Nvf~p~~Y~~~~~~~~~~d~~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 304 (304)
T d1t77a1 244 GYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 304 (304)
T ss_dssp STTSSHHHHHHHTCCBCGGGSTTSCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCCCCC
T ss_pred ccccCCHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHCCCCchhhcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-29 Score=301.36 Aligned_cols=274 Identities=11% Similarity=0.116 Sum_probs=232.4
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-----ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-----TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAF 2071 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~-----tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~ 2071 (2342)
..|.|++|+|+|++|++|+ ||.|+|||+.++.... ...+|.+.|++++|+|||++|++|+.|++|++||+....
T Consensus 52 ~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~ 130 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc
Confidence 4567799999999999997 8999999998754322 345799999999999999999999999999999987643
Q ss_pred ccccc-ccCCCCCCccccccCCCCCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2072 TSRTG-TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLH 2147 (2342)
Q Consensus 2072 ~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIW 2147 (2342)
..... ...+...+..+.+++++..++++..+.. ..|+. ........+|...|++++|++++..+++|+.||.|++|
T Consensus 131 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~ 210 (337)
T d1gxra_ 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 32222 3456677888899999999988887754 34543 45567788899999999999999999999999999999
Q ss_pred ECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2148 SIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2148 DLrTGklIrsL~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
|+++++.+..+... .+..+++++++..++.+..++.+++|+++...... ...|...|++++|+|+|++|++|+.
T Consensus 211 d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~---- 285 (337)
T d1gxra_ 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGK---- 285 (337)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEET----
T ss_pred ccccceeecccccccceEEEEEcccccccceecccccccccccccccccc-ccccccccceEEECCCCCEEEEEeC----
Confidence 99999998888653 47889999999999999999999999997544332 3458999999999999999999873
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
||.|++||+.+++.+..+. |...|++++|+|++++|++|+.
T Consensus 286 -------------------------------------Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~s~ 326 (337)
T d1gxra_ 286 -------------------------------------DNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp -------------------------------------TSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEET
T ss_pred -------------------------------------CCeEEEEECCCCCEEEEcc--CCCCEEEEEEeCCCCEEEEEeC
Confidence 6789999999999988766 7889999999999999999999
Q ss_pred CCcEEEEeC
Q 000085 2307 DKQLIVFTD 2315 (2342)
Q Consensus 2307 DGsIrVWDi 2315 (2342)
||+|+|||+
T Consensus 327 D~~I~vWdl 335 (337)
T d1gxra_ 327 DKKATVYEV 335 (337)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 999999993
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.1e-29 Score=288.72 Aligned_cols=280 Identities=15% Similarity=0.186 Sum_probs=241.6
Q ss_pred eeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1989 LAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1989 ls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+.+|.+ .|++++|+|++++|++|+.||+|+|||+.+++.+.++.+|.+.|++++|+|++.++++++.++++.+|+..
T Consensus 13 L~GH~~---~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 13 LSGHRS---PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp EECCSS---CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred EcCCCC---CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 444544 45669999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCcc-cccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR-RRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLL 2145 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~-~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIr 2145 (2342)
....... ...+...+..+.+++++..++++..++.. .|+. ......+.+|...+.+++|++++.++++|+.||.|+
T Consensus 90 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~ 168 (317)
T d1vyhc1 90 GFECIRT-MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168 (317)
T ss_dssp SSCEEEC-CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccccccc-cccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence 7543332 34566777888999999999888887653 4544 456788899999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCC--cEEEEEecC--------------------CcEEEEEeCCCeEEEEEeCCceeeeecCCCCC
Q 000085 2146 LHSIRRGRLIRRLVGVD--AHAVSLSSE--------------------GVIMTWNKLQHTLSSFTLNGVLVARAKLPLSG 2203 (2342)
Q Consensus 2146 IWDLrTGklIrsL~gh~--vssLSfSpD--------------------G~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~ 2203 (2342)
+|++.+++.+..+..+. +..++++++ +.+++.+..++.+++|++...........|..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 248 (317)
T d1vyhc1 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248 (317)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence 99999999999887754 456666554 34677788899999999875554444556999
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
.|.+++|+|+|++|++|+. ||.|+|||+.+++++.++.
T Consensus 249 ~v~~~~~~~~~~~l~s~~~-----------------------------------------dg~i~iwd~~~~~~~~~~~- 286 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILSCAD-----------------------------------------DKTLRVWDYKNKRCMKTLN- 286 (317)
T ss_dssp CEEEEEECSSSSCEEEEET-----------------------------------------TTEEEEECCTTSCCCEEEE-
T ss_pred CEEEEEECCCCCEEEEEEC-----------------------------------------CCeEEEEECCCCcEEEEEc-
Confidence 9999999999999999872 7889999999999999998
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2284 GEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2284 gHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
+|...|++++|+|++++|++|+.||+|+|||
T Consensus 287 ~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=4.7e-29 Score=289.13 Aligned_cols=274 Identities=14% Similarity=0.166 Sum_probs=222.7
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG- 2076 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~- 2076 (2342)
.|.+++|+|++++|++|+.||+|+|||+.+++.+..+.+|...|++++|+|++.++++|+.|+++++|+..........
T Consensus 57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 136 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEE
T ss_pred CEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccc
Confidence 4566999999999999999999999999999999999999999999999999999999999999999998775432222
Q ss_pred --ccCCCCCCccccccCCCCCceeecCCCcc-ccc--cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 000085 2077 --TIEPSSGMGTPGNSIGSSTPANASADKSR-RRR--IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRR 2151 (2342)
Q Consensus 2077 --~~~~~~~V~svs~SpDG~~Las~s~D~s~-~~~--i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrT 2151 (2342)
...+....... ....+..+.....+... .+. ..........+...+.+..+.+.+.++++|+.|+.|++||+++
T Consensus 137 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~ 215 (340)
T d1tbga_ 137 RELAGHTGYLSCC-RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215 (340)
T ss_dssp EEECCCSSCEEEE-EEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred eeccccccccccc-ccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCC
Confidence 11222222221 22222233333333222 111 1233455566788899999999999999999999999999999
Q ss_pred CeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceee-ee-cCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2152 GRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA-RA-KLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~-s~-~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
++++.++.+|. +..++++|+|.+++.+..++.+++|++...... .. ...+...|++++|+|+|++|++|+.
T Consensus 216 ~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~----- 290 (340)
T d1tbga_ 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----- 290 (340)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET-----
T ss_pred CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEEC-----
Confidence 99999998875 688999999999999999999999999754332 22 2237788999999999999999973
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTAD 2307 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsD 2307 (2342)
||.|++||+.+++++.++. +|..+|++++|+|++.+|++|+.|
T Consensus 291 ------------------------------------dg~i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~l~s~s~D 333 (340)
T d1tbga_ 291 ------------------------------------DFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp ------------------------------------TSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETT
T ss_pred ------------------------------------CCEEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEccC
Confidence 6779999999999999999 999999999999999999999999
Q ss_pred CcEEEEe
Q 000085 2308 KQLIVFT 2314 (2342)
Q Consensus 2308 GsIrVWD 2314 (2342)
|.|+|||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=4.9e-29 Score=296.08 Aligned_cols=273 Identities=14% Similarity=0.094 Sum_probs=229.8
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-ccC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG-TIE 2079 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~ 2079 (2342)
+++++|+|+.|+.+. ++.|.+||++++.....+.+|.+.|+|++|+|+|++|+||+.||+|+|||+.++...... ...
T Consensus 22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~ 100 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100 (311)
T ss_dssp CCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred EEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccc
Confidence 478999999998885 778999999999999999999999999999999999999999999999999987654332 456
Q ss_pred CCCCCccccccCCCCCceeecCCCc-----cccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKS-----RRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s-----~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGk 2153 (2342)
+...+.++.|+++++.+++++.+.. ..++.......+.+|...|++++|+|++.+ +++|+.||.|++||+++++
T Consensus 101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~ 180 (311)
T d1nr0a1 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 180 (311)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred ccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccc
Confidence 7788999999999999988776432 234556678889999999999999999875 8899999999999999999
Q ss_pred EEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeee------cCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2154 LIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARA------KLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2154 lIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~------~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
....+..|. +..++++|+|.+++.+..++.+.+|+... ..+... ...|...|++++|+|+|++|++|+.
T Consensus 181 ~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~-- 258 (311)
T d1nr0a1 181 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-- 258 (311)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET--
T ss_pred cccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC--
Confidence 999998764 78999999999999999999999999863 333222 1238899999999999999999972
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG 2304 (2342)
||.|+|||+.+++++.++..++......+.+.+++.+|+++
T Consensus 259 ---------------------------------------Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~ 299 (311)
T d1nr0a1 259 ---------------------------------------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299 (311)
T ss_dssp ---------------------------------------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred ---------------------------------------CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEE
Confidence 78899999999999999984333334444555566679999
Q ss_pred eCCCcEEEEeC
Q 000085 2305 TADKQLIVFTD 2315 (2342)
Q Consensus 2305 SsDGsIrVWDi 2315 (2342)
+.||.|++||.
T Consensus 300 s~dG~i~~wd~ 310 (311)
T d1nr0a1 300 SANGFINFVNP 310 (311)
T ss_dssp ETTCCEEEEET
T ss_pred ECCCEEEEEeC
Confidence 99999999994
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.4e-28 Score=290.20 Aligned_cols=277 Identities=14% Similarity=0.180 Sum_probs=224.2
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc------------------cCCCCeEEEEecCCCCEEEEE
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS------------------GHCAPVTCLALSSDSNFLVTG 2056 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~------------------GHt~~VtcLAfSPDG~~LaSG 2056 (2342)
+...|+|++|+|||++||+|+ |++|+|||+.+++.+..+. +|...|++++|+|+|++|++|
T Consensus 61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence 345567799999999999997 8999999999887765543 467779999999999999999
Q ss_pred eCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccCC--ceEEecCCCCCeEEEEEe-cCC
Q 000085 2057 SQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG--PIHVLRGHHREILCCCVS-SDL 2132 (2342)
Q Consensus 2057 S~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~--~l~~L~GHs~~Vt~VafS-PDg 2132 (2342)
+.||+|++||...+..... ...+...+..+.+++++..++.+..++. ..|+... .......+. ...++.++ +++
T Consensus 140 ~~dg~v~i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~ 217 (388)
T d1erja_ 140 AEDRLIRIWDIENRKIVMI-LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDG 217 (388)
T ss_dssp ETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-CEEEEEECSTTC
T ss_pred ccccccccccccccccccc-cccccccccccccccccccccccccceeeeeeecccccccccccccc-ccccccccCCCC
Confidence 9999999999988765443 3557778889999999998888877764 4465543 233444444 44555555 578
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec-------C--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCcee---------
Q 000085 2133 GVVVSCSDSSDLLLHSIRRGRLIRRLVG-------V--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLV--------- 2194 (2342)
Q Consensus 2133 ~lLaSGS~DGtIrIWDLrTGklIrsL~g-------h--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L--------- 2194 (2342)
.++++|+.||.|++||.+++..+..+.. | .+..++++++|..++.+..++.+++|++.....
T Consensus 218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 297 (388)
T d1erja_ 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297 (388)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccc
Confidence 9999999999999999999998877643 2 368899999999999999999999999853211
Q ss_pred ---eeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2195 ---ARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2195 ---~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
......|...|.+++|+|+|++|++|+. ||.|++||
T Consensus 298 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-----------------------------------------dg~i~vwd 336 (388)
T d1erja_ 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSK-----------------------------------------DRGVLFWD 336 (388)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEEEET-----------------------------------------TSEEEEEE
T ss_pred cceeeecccccceEEEEEECCCCCEEEEEeC-----------------------------------------CCEEEEEE
Confidence 1122338899999999999999999973 78899999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEE------ecCCCEEEEEeCCCcEEEEeCC
Q 000085 2272 LHTLKVFHVLKLGEGQDITALAL------NKDNTNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2272 L~Tgk~L~tL~lgHs~~ItsLaf------SPDG~~LaSGSsDGsIrVWDi~ 2316 (2342)
+.+++++.++. +|...|+++++ +|++.+|++|+.||+|+||++.
T Consensus 337 ~~~~~~~~~l~-~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 337 KKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCCcEEEEEe-CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999999999 99999999975 5789999999999999999953
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=7.5e-28 Score=290.64 Aligned_cols=315 Identities=12% Similarity=0.074 Sum_probs=224.4
Q ss_pred cccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc--cceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 1992 ASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK--TLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1992 hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk--ll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
|...+..++|++|+|||++||+|+.||.|+|||+.+++ .+..+.+|.++|++++|+|++++|+||+.|++|+|||+.+
T Consensus 3 ~~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence 44556678889999999999999999999999998775 5677899999999999999999999999999999999987
Q ss_pred Ccccccc-ccCCCCCCccccccCCCCCceeecCCCcc-ccccC--C----ceEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 000085 2070 AFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKSR-RRRIE--G----PIHVLRGHHREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2070 g~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~-~~~i~--~----~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
+...... ...+...+.++.|+|+++.+++++.++.. .|... . ......+|...|++++|+|++.++++|+.|
T Consensus 83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D 162 (371)
T d1k8kc_ 83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162 (371)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence 6544333 34567789999999999999999888753 34332 2 234556799999999999999999999999
Q ss_pred CcEEEEECCCC------------------eEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCC
Q 000085 2142 SDLLLHSIRRG------------------RLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPL 2201 (2342)
Q Consensus 2142 GtIrIWDLrTG------------------klIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~H 2201 (2342)
|+|++||...+ ..+.....|. +..++|+|+|..++.+..++.+.+|++...........|
T Consensus 163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 242 (371)
T d1k8kc_ 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242 (371)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc
Confidence 99999998643 3444444443 678999999999999999999999999744443344458
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccc--cccCCCC------ccCCCCeEEEEECC
Q 000085 2202 SGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASD--QSVDNNR------FDFPSPSICFLDLH 2273 (2342)
Q Consensus 2202 s~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~--~s~ss~~------ias~DGsIrIWDL~ 2273 (2342)
..+|.+++|+|||+++++|. |+.. .+|...... ....+..... ....... +...|........
T Consensus 243 ~~~v~s~~fs~d~~~la~g~-d~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 313 (371)
T d1k8kc_ 243 TLPLLAVTFITESSLVAAGH-DCFP------VLFTYDSAA-GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS- 313 (371)
T ss_dssp SCCEEEEEEEETTEEEEEET-TSSC------EEEEEETTT-TEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred cccceeeeecCCCCEEEEEc-CCce------EEEEeeCCC-ceEEEeeeecCccccccccccceeeEecccceeEEecc-
Confidence 89999999999999988775 4442 122221111 0000000000 0000000 0000111111110
Q ss_pred CCeEEEEEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEEEeCC
Q 000085 2274 TLKVFHVLKLGEGQDITALALNKDN----TNLLVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2274 Tgk~L~tL~lgHs~~ItsLafSPDG----~~LaSGSsDGsIrVWDi~ 2316 (2342)
......+...|...|+++++.+.+ ..|+|+|.||.|++|++.
T Consensus 314 -~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 314 -AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359 (371)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred -ccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence 111112222588999999998855 468999999999999953
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=3.1e-27 Score=273.16 Aligned_cols=275 Identities=12% Similarity=0.104 Sum_probs=215.5
Q ss_pred ceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 1997 RSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1997 ~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
..|++++|+|||++|++|+.||+|++||+.+++.+..+. +|...|++++|+|+|. +++++.|+++++|+.........
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~ 91 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSS 91 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTT
T ss_pred CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccccc
Confidence 346679999999999999999999999999999888874 7999999999999986 56677899999999876432211
Q ss_pred --cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 000085 2076 --GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGR 2153 (2342)
Q Consensus 2076 --~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGk 2153 (2342)
....+...+..+.+++++..++.+..+....|+..+...... ...+++++|+|+++++++|+.||.|++||+++++
T Consensus 92 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~ 169 (299)
T d1nr0a2 92 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI--SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 169 (299)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence 123455667788899999988888777777776554444433 4467899999999999999999999999999887
Q ss_pred EEEE-EecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeee--cCCCCCCeEEEEEccCCCEEEEEeCCCCCC
Q 000085 2154 LIRR-LVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARA--KLPLSGSIGCMEISLDGHSALIGVNSSSTN 2227 (2342)
Q Consensus 2154 lIrs-L~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~--~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d 2227 (2342)
.... ...| .+..+++++++.+++.+..++.+++|++.. ..+... ...|...|++++|+|+|.++++|+.
T Consensus 170 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~----- 244 (299)
T d1nr0a2 170 VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL----- 244 (299)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-----
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC-----
Confidence 6542 2223 478999999999999999999999999863 333221 2238899999999999999999973
Q ss_pred CCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEE--EEecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2228 NGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH--VLKLGEGQDITALALNKDNTNLLVST 2305 (2342)
Q Consensus 2228 ~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~--tL~lgHs~~ItsLafSPDG~~LaSGS 2305 (2342)
||.|++||+.++.... ....++...|.++.| +++.+|++|+
T Consensus 245 ------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s 287 (299)
T d1nr0a2 245 ------------------------------------DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAG 287 (299)
T ss_dssp ------------------------------------TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEE
T ss_pred ------------------------------------CCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEe
Confidence 6779999998764322 222133455666655 5677999999
Q ss_pred CCCcEEEEeCC
Q 000085 2306 ADKQLIVFTDP 2316 (2342)
Q Consensus 2306 sDGsIrVWDi~ 2316 (2342)
.||.|++||++
T Consensus 288 ~D~~i~iWdl~ 298 (299)
T d1nr0a2 288 QDSNIKFWNVP 298 (299)
T ss_dssp TTSCEEEEECC
T ss_pred CCCEEEEEecc
Confidence 99999999964
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.1e-25 Score=251.29 Aligned_cols=308 Identities=18% Similarity=0.199 Sum_probs=221.3
Q ss_pred ccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEE
Q 000085 1986 PRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLW 2065 (2342)
Q Consensus 1986 p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVW 2065 (2342)
...+.+|...+. +| ++++|++|++|+.||+|+|||+.+++++.++.+|.+.|++++|+++ +|++|+.|+++++|
T Consensus 9 ~~~l~GH~~~V~--s~--~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 9 PKVLKGHDDHVI--TC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW 82 (342)
T ss_dssp CEEEECSTTSCE--EE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred CEEECCcCCceE--EE--EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccc
Confidence 344555655552 23 5667999999999999999999999999999999999999999864 99999999999999
Q ss_pred eccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC--CceEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2066 RIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCSDSS 2142 (2342)
Q Consensus 2066 Dl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG 2142 (2342)
+.......... ......+.. ..........+..+.. ..++.. .....+..+... ...+......+++++.|+
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~ 157 (342)
T d2ovrb2 83 NAETGECIHTL-YGHTSTVRC--MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA--VRCVQYDGRRVVSGAYDF 157 (342)
T ss_dssp ETTTTEEEEEE-CCCSSCEEE--EEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC--EEEEEECSSCEEEEETTS
T ss_pred ccccccceecc-cccceeEee--eecccccccccccceeEEEeecccccceeeeeccccc--ceeeccccceeeeecCCC
Confidence 99875433222 111111111 1112233333333332 223322 223333333332 333455677899999999
Q ss_pred cEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2143 DLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2143 tIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
.|++||.+.+..+..+.+|......+++++..++.+..++.+++|++...........|...+.++.++ ++++++|+.
T Consensus 158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~ 235 (342)
T d2ovrb2 158 MVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA 235 (342)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred eEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcC
Confidence 999999999999999999998888999999999999999999999998655555556688899888776 569999998
Q ss_pred CCCCCCCCcccccccCCCCC------------CccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec----CCC
Q 000085 2223 SSSTNNGSYDNIQGLNSKQS------------GTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL----GEG 2286 (2342)
Q Consensus 2223 DGs~d~~i~d~Lw~l~~~~~------------~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l----gHs 2286 (2342)
++. .++|+...... ....+..+ ......+..||+|+|||+.++++++.+.. +|.
T Consensus 236 d~~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~ 305 (342)
T d2ovrb2 236 DST------VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN----KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 305 (342)
T ss_dssp TSC------EEEEETTTCCEEEEECSTTSCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred CCE------EEEEecccccccccccccceeeeceeecccC----CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCC
Confidence 877 34555443321 11111111 11122334699999999999999988752 577
Q ss_pred CCeEEEEEecCCCEEEEEeCCCc----EEEEeCC
Q 000085 2287 QDITALALNKDNTNLLVSTADKQ----LIVFTDP 2316 (2342)
Q Consensus 2287 ~~ItsLafSPDG~~LaSGSsDGs----IrVWDi~ 2316 (2342)
..|++++|+|++.+|++|+.||+ |++||++
T Consensus 306 ~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 88999999999999999999985 9999964
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.3e-24 Score=251.23 Aligned_cols=304 Identities=14% Similarity=0.172 Sum_probs=223.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+|+.+++++.|++|++|+..++ .....+..|... +.+++|+++ .+|++|+.|++|++|+....+......
T Consensus 22 ~~~~l~tgs~Dg~i~vWd~~~~------~~~~~l~~H~~~---V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~ 91 (355)
T d1nexb2 22 EDNYVITGADDKMIRVYDSINK------KFLLQLSGHDGG---VWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFE 91 (355)
T ss_dssp ETTEEEEEETTTEEEEEETTTT------EEEEEEECCSSC---EEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCC------cEEEEEECCCCC---EEEEEEcCC-CEEEEEecccccccccccccccccccc
Confidence 5678999999999999997652 122334445544 566999986 579999999999999999887765544
Q ss_pred c--CCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCC--------------------CCCCccccccCCC
Q 000085 2036 G--HCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP--------------------SSGMGTPGNSIGS 2093 (2342)
Q Consensus 2036 G--Ht~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~--------------------~~~V~svs~SpDG 2093 (2342)
. +...+....+++++.++++++.|++|++||+.+........... ..........+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (355)
T d1nexb2 92 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171 (355)
T ss_dssp CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEET
T ss_pred cccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccc
Confidence 3 33445667788899999999999999999998754332210000 0001112234456
Q ss_pred CCceeecCCCc-ccccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEec
Q 000085 2094 STPANASADKS-RRRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSS 2170 (2342)
Q Consensus 2094 ~~Las~s~D~s-~~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSp 2170 (2342)
..++.+..+.. ..|+. .+.+....++...+.++.|++++..+++++.||+|++||++++..+..+.+|.....++..
T Consensus 172 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~ 251 (355)
T d1nexb2 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251 (355)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEE
T ss_pred ceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccc
Confidence 66666666654 33544 3456777889999999999999999999999999999999999999999988744344444
Q ss_pred CCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEE-EEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccc
Q 000085 2171 EGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCM-EISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDL 2249 (2342)
Q Consensus 2171 DG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsL-afSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFsp 2249 (2342)
++..++.+..+|.|++|+++...... ..|...+.++ .+++++.++++|+
T Consensus 252 ~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~---------------------------- 301 (355)
T d1nexb2 252 SDKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSGS---------------------------- 301 (355)
T ss_dssp CSSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEEE----------------------------
T ss_pred ccceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEEe----------------------------
Confidence 56789999999999999987533221 1255555554 5677888887764
Q ss_pred ccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 000085 2250 ASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2250 d~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWD 2314 (2342)
|+.|+|||+++++++.....+|...|++++|+|+ ..+++++.||.++||.
T Consensus 302 --------------d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 302 --------------ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp --------------TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred --------------CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence 6789999999999887655589999999999987 4678889999977765
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=3.8e-24 Score=242.78 Aligned_cols=268 Identities=16% Similarity=0.168 Sum_probs=216.1
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc-c
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-R 2107 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~ 2107 (2342)
....+|.||.+.|+||+|+|++++|+|||.||+|+|||+.++....++ ..+...+.++.+++++..++....+.... +
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCcEEEEeeecccccccccccccccccc
Confidence 445689999999999999999999999999999999999988766554 45778899999999999998887776533 2
Q ss_pred c--cCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCe
Q 000085 2108 R--IEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2108 ~--i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGs 2183 (2342)
. .......+.+|...+.++.|++++..+++++.|+.+++||+++++.+..+.+|. ...+++++++.+++.+..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 166 (317)
T d1vyhc1 87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166 (317)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence 2 234566778899999999999999999999999999999999999999998765 678899999999999999999
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
+++|+............|...+.++.++|++.........+.. ...+... ......+..
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~----~~~~~~~~~ 225 (317)
T d1vyhc1 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE-----------------TKKSGKP----GPFLLSGSR 225 (317)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----------------------------CCEEEEEET
T ss_pred EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccce-----------------eeeeccC----CceeEeccC
Confidence 9999998655555555689999999999887544322111110 0000000 000111235
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
|+.|++||+.+++++.++. +|...|++++|+|++++|++|+.||.|++||..+..
T Consensus 226 d~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 280 (317)
T d1vyhc1 226 DKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280 (317)
T ss_dssp TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred CCEEEEEECCCCcEEEEEe-CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence 8999999999999999999 899999999999999999999999999999976553
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.9e-24 Score=238.40 Aligned_cols=270 Identities=18% Similarity=0.241 Sum_probs=205.9
Q ss_pred eccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccC
Q 000085 1990 AFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHR 2069 (2342)
Q Consensus 1990 s~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~t 2069 (2342)
..+..+...|.|+ ++||++|++|+.||+|+|||+.+++++.++.+|.+.|+|++| ++++|+||+.|++|++|++..
T Consensus 9 ~~~~~~~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~ 84 (293)
T d1p22a2 9 HCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 84 (293)
T ss_dssp ECCCSSCCCEEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred eccCCCCCCEEEE--EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence 3344455556554 568999999999999999999999999999999999999988 578999999999999999988
Q ss_pred CccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC-----CceEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 000085 2070 AFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE-----GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSD 2143 (2342)
Q Consensus 2070 g~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~-----~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGt 2143 (2342)
+........ ..............++++..++. ..|+.. .....+..|...|.++.+. ...+++++.|+.
T Consensus 85 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~ 159 (293)
T d1p22a2 85 GEMLNTLIH---HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRT 159 (293)
T ss_dssp CCEEEEECC---CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred ccccccccc---cccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCc
Confidence 654433211 11122223333444444444433 334332 2345667888899888775 467889999999
Q ss_pred EEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2144 LLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2144 IrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
|++||+++++.+..+.++......+++++..++.+..++.+++|++...........|...+.+ +++++.++++|+.
T Consensus 160 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~- 236 (293)
T d1p22a2 160 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAY- 236 (293)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEET-
T ss_pred eeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcC-
Confidence 9999999999999999887666677777888999999999999999765555445557777765 5677889998873
Q ss_pred CCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC---------CeEEEEEecCCCCCeEEEEE
Q 000085 2224 SSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT---------LKVFHVLKLGEGQDITALAL 2294 (2342)
Q Consensus 2224 Gs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T---------gk~L~tL~lgHs~~ItsLaf 2294 (2342)
||.|++||+.+ ..++..+. +|.+.|++++|
T Consensus 237 ----------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~H~~~V~~v~~ 275 (293)
T d1p22a2 237 ----------------------------------------DGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF 275 (293)
T ss_dssp ----------------------------------------TSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE
T ss_pred ----------------------------------------CCEEEEEECCCCccccccCCceeeEEec-CCCCCEEEEEE
Confidence 66788888632 35677787 89999999998
Q ss_pred ecCCCEEEEEeCCCcEEEEe
Q 000085 2295 NKDNTNLLVSTADKQLIVFT 2314 (2342)
Q Consensus 2295 SPDG~~LaSGSsDGsIrVWD 2314 (2342)
++.+|++|+.||+|+|||
T Consensus 276 --d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 276 --DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp --CSSCEEECCSSSEEEEEC
T ss_pred --cCCEEEEEecCCEEEEeC
Confidence 466899999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.8e-24 Score=250.30 Aligned_cols=261 Identities=11% Similarity=0.075 Sum_probs=206.6
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc--ccc
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA--KTL 2031 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg--kll 2031 (2342)
-++|+.+++++ |+.|++|+.......... .......+...+.+++|+|||++|++|+.||+|++||+... +..
T Consensus 60 s~~g~~latg~-dg~V~iWd~~~~~~~~~~----~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~ 134 (337)
T d1gxra_ 60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPV----SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp CSSSSEEEEEC-BSEEEEEETTSTTCCSCS----EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred CCCCCEEEEEE-CCEEEEEEccCCccccee----EEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccc
Confidence 35688888887 679999986552221111 11111223345677999999999999999999999998743 456
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE 2110 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~ 2110 (2342)
..+.+|...|.+++|+|++.++++++.|++|++|++.++..... ...+...+.++++++++..++.+..++. ..|+..
T Consensus 135 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~ 213 (337)
T d1gxra_ 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ-FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 77889999999999999999999999999999999998754433 3456778889999999999988887765 445553
Q ss_pred Cc-eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCcEEEEEecCCcEEEEEeCCCeEEEEE
Q 000085 2111 GP-IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFT 2188 (2342)
Q Consensus 2111 ~~-l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~IlVwdssdGsI~I~d 2188 (2342)
.. ......|...|++++|+|+++++++|+.||.+++||+++++....... ..+..++|+|+|.+++.+..++.|++|+
T Consensus 214 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd 293 (337)
T d1gxra_ 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEE
Confidence 22 223345889999999999999999999999999999999887654332 2478999999999999999999999999
Q ss_pred eC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2189 LN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2189 ln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
.. +..+.. ..|...|++++|+|+|++|++|+.
T Consensus 294 ~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~t~s~ 326 (337)
T d1gxra_ 294 TPYGASIFQ--SKESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp TTTCCEEEE--EECSSCEEEEEECTTSCEEEEEET
T ss_pred CCCCCEEEE--ccCCCCEEEEEEeCCCCEEEEEeC
Confidence 86 444443 338899999999999999999973
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.92 E-value=3.9e-24 Score=247.00 Aligned_cols=247 Identities=15% Similarity=0.160 Sum_probs=203.0
Q ss_pred cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcccc
Q 000085 2028 AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRR 2107 (2342)
Q Consensus 2028 gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~ 2107 (2342)
|+..+++.||.+.|+|++|+||+++|+||+.||+|++||+.++.........+...+.++.++|++..++++..+....|
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 81 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence 56678899999999999999999999999999999999999988777766678888999999999987776666655666
Q ss_pred ccCC-----ceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCC
Q 000085 2108 RIEG-----PIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQH 2182 (2342)
Q Consensus 2108 ~i~~-----~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdG 2182 (2342)
+... .......|...+.+++|++++..+++++ ++.+.+|+. ++.......+....+++++++.+++.+..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSH--GKLTEVPISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEET--TEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred ccCCccccccccccccccccccccccccccccccccc-ccccccccc--ccccccccccccccccccccccccccccccc
Confidence 5422 2333456788899999999999777665 568999994 4455555667788999999999999999999
Q ss_pred eEEEEEeCCceeee-ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCcc
Q 000085 2183 TLSSFTLNGVLVAR-AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFD 2261 (2342)
Q Consensus 2183 sI~I~dlnG~~L~s-~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ia 2261 (2342)
.+++|++.+..+.. ....|...|++++|+|+++++++|+.
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------------------------------------- 199 (299)
T d1nr0a2 159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ--------------------------------------- 199 (299)
T ss_dssp EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET---------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc---------------------------------------
Confidence 99999997655433 33448999999999999999999873
Q ss_pred CCCCeEEEEECCCCeEEEEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2262 FPSPSICFLDLHTLKVFHVLK--LGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~--lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+.|++||+.++..+.... .+|...|++++|+|++.+|++|+.||.|++||....
T Consensus 200 --d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 200 --SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 256 (299)
T ss_dssp --TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred --ccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCC
Confidence 5679999998776543322 268899999999999999999999999999997654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4.3e-23 Score=244.90 Aligned_cols=273 Identities=13% Similarity=0.127 Sum_probs=202.8
Q ss_pred cCCCeEEecCCC-ceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC--CCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1955 QHGKASASPASG-TFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH--DKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD-~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp--DGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
+.|+.++.++++ ..++.|+.... ..+....+.......+++++|+| +|++|++|+.||+|+|||+..++..
T Consensus 27 ~~~~~la~~~~~~~~i~~~~~~~~------~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~ 100 (325)
T d1pgua1 27 PTTNAIAYPCGKSAFVRCLDDGDS------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES 100 (325)
T ss_dssp TTTTEEEEEETTEEEEEECCSSCC------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCEEEEEEeCCCC------CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce
Confidence 456666655443 35677764331 11111122111223577899998 5679999999999999999776543
Q ss_pred e--------ecccCCCCeEEEEecCCCCEEEEEeC--CCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecC
Q 000085 2032 E--------TASGHCAPVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASA 2101 (2342)
Q Consensus 2032 ~--------tL~GHt~~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~ 2101 (2342)
. .+..|.++|.+++|++++++|++++. |+.+++|++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------- 149 (325)
T d1pgua1 101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG------------------------------- 149 (325)
T ss_dssp TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-------------------------------
T ss_pred eeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc-------------------------------
Confidence 3 34568899999999999999988764 678999998764
Q ss_pred CCccccccCCceEEecCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeEEEEEecC-----CcEEEEEecC-CcE
Q 000085 2102 DKSRRRRIEGPIHVLRGHHREILCCCVSSDLGV-VVSCSDSSDLLLHSIRRGRLIRRLVGV-----DAHAVSLSSE-GVI 2174 (2342)
Q Consensus 2102 D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~l-LaSGS~DGtIrIWDLrTGklIrsL~gh-----~vssLSfSpD-G~I 2174 (2342)
..+..+.+|...|++++|+|++.. +++++.||.+++||+.+++....+..+ .+..++|+|| +.+
T Consensus 150 ---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~ 220 (325)
T d1pgua1 150 ---------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220 (325)
T ss_dssp ---------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE
T ss_pred ---------ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccccee
Confidence 234556889999999999998765 788999999999999998887777543 2688999997 688
Q ss_pred EEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc---cCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccc
Q 000085 2175 MTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS---LDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLAS 2251 (2342)
Q Consensus 2175 lVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS---PDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~ 2251 (2342)
++.+..++.|++|++...........|...+.++.|+ +||++|++|+.
T Consensus 221 l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~----------------------------- 271 (325)
T d1pgua1 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA----------------------------- 271 (325)
T ss_dssp EEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEET-----------------------------
T ss_pred ccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeC-----------------------------
Confidence 8888999999999987444433444567666666555 78999999872
Q ss_pred ccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCC--CeEEEEEecC-CCEEEEEeCCCcEEEEeC
Q 000085 2252 DQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQ--DITALALNKD-NTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2252 ~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~--~ItsLafSPD-G~~LaSGSsDGsIrVWDi 2315 (2342)
|+.|+|||+.+++++..+. .|.. .+..+++.+. +.+|++|+.||.|+|||+
T Consensus 272 ------------D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 272 ------------DATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ------------TSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ------------CCeEEEEECCCCCEEEEEE-ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 7889999999999999887 4443 3444444433 347999999999999994
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.2e-22 Score=234.75 Aligned_cols=276 Identities=17% Similarity=0.176 Sum_probs=207.6
Q ss_pred eeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1989 LAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1989 ls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
+.+|...+ ++|+ ++++++|++|+.||+|+|||+.+++++.++.+|.+.|++++|+|+ .+|+||+.|++|++|++.
T Consensus 8 L~GH~~~v--itc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~ 82 (355)
T d1nexb2 8 LRGHMTSV--ITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK 82 (355)
T ss_dssp EECCSSSC--EEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred ECCcCCCc--EEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence 44555444 2344 456899999999999999999999999999999999999999985 589999999999999998
Q ss_pred CCccccccc-cCCCCCCccccccCCCCCceeecCCCc-cccccCC-------------------------ceEEecCCCC
Q 000085 2069 RAFTSRTGT-IEPSSGMGTPGNSIGSSTPANASADKS-RRRRIEG-------------------------PIHVLRGHHR 2121 (2342)
Q Consensus 2069 tg~~i~t~~-~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~~-------------------------~l~~L~GHs~ 2121 (2342)
......... ...........+.+++..++.+..++. ..|+... .......|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d1nexb2 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162 (355)
T ss_dssp TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence 865544331 222223344456677777777777654 3344321 1222333444
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecC
Q 000085 2122 EILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKL 2199 (2342)
Q Consensus 2122 ~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~ 2199 (2342)
.+.+ +.++++++++++.|+.|++||+++++.+....++. ...+.+++++..++.+..++.+++|+...........
T Consensus 163 ~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 240 (355)
T d1nexb2 163 SVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240 (355)
T ss_dssp CEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred cccc--cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc
Confidence 4443 45678999999999999999999999998887654 6788899999999999999999999997655555556
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEE
Q 000085 2200 PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH 2279 (2342)
Q Consensus 2200 ~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~ 2279 (2342)
.|...|.+++++ ++++++|+. ||.|++||+.++....
T Consensus 241 ~h~~~v~~~~~~--~~~l~~~~~-----------------------------------------dg~i~iwd~~~~~~~~ 277 (355)
T d1nexb2 241 GHTALVGLLRLS--DKFLVSAAA-----------------------------------------DGSIRGWDANDYSRKF 277 (355)
T ss_dssp CCSSCCCEEEEC--SSEEEEECT-----------------------------------------TSEEEEEETTTCCEEE
T ss_pred cccccccccccc--cceeeeeec-----------------------------------------ccccccccccccceec
Confidence 799999999986 568888862 7889999999887654
Q ss_pred EEecCCCCCeEEE-EEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2280 VLKLGEGQDITAL-ALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2280 tL~lgHs~~ItsL-afSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
.. |...+.++ .+++++.+|++| .||.|+|||+.+.
T Consensus 278 ~~---~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg 313 (355)
T d1nexb2 278 SY---HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSG 313 (355)
T ss_dssp EE---ECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTC
T ss_pred cc---ccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCC
Confidence 43 44455554 566777766555 5999999997654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=1.7e-22 Score=239.43 Aligned_cols=257 Identities=9% Similarity=0.041 Sum_probs=198.6
Q ss_pred ecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc--
Q 000085 1954 FQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL-- 2031 (2342)
Q Consensus 1954 f~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll-- 2031 (2342)
.++|..++.++ ++.+.+|+..+... ...+..| ...+++++|+|+|++|++|+.||+|+|||+.+++..
T Consensus 26 ~~~g~~l~~~~-~~~v~i~~~~~~~~------~~~~~~H---~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~ 95 (311)
T d1nr0a1 26 TPAGDKIQYCN-GTSVYTVPVGSLTD------TEIYTEH---SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95 (311)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTCSSC------CEEECCC---SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCCCCEEEEEe-CCEEEEEECCCCce------eEEEcCC---CCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence 35677777764 55788998665211 1222333 345677999999999999999999999999987654
Q ss_pred eecccCCCCeEEEEecCCCCEEEEEeC--CCceEEEeccCCccccccccCCCCCCccccccCCCCC-ceeecCCCc-ccc
Q 000085 2032 ETASGHCAPVTCLALSSDSNFLVTGSQ--DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST-PANASADKS-RRR 2107 (2342)
Q Consensus 2032 ~tL~GHt~~VtcLAfSPDG~~LaSGS~--DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~-Las~s~D~s-~~~ 2107 (2342)
..+.+|.+.|.+++|+|++++|++++. +..++||++.++....+. ..+...+.++.|+|++.. +++++.++. ..|
T Consensus 96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~ 174 (311)
T d1nr0a1 96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 174 (311)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred cccccccCccccccccccccccccccccccccccccccccccccccc-cccccccccccccccceeeecccccccccccc
Confidence 557899999999999999999999986 466999999987655543 456778899999999986 566777664 456
Q ss_pred ccC--CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec-------C--CcEEEEEecCCcEEE
Q 000085 2108 RIE--GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG-------V--DAHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2108 ~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g-------h--~vssLSfSpDG~IlV 2176 (2342)
+.. .....+.+|...|++++|+|+++++++|+.||.|++||+.++..+..+.. | .+..++|+|+|.+++
T Consensus 175 d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~ 254 (311)
T d1nr0a1 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254 (311)
T ss_dssp ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred cccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEE
Confidence 553 56778889999999999999999999999999999999999998887753 2 378899999999999
Q ss_pred EEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2177 WNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2177 wdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
.+..++.|++|+++... +......+......+.+.+++.++++++
T Consensus 255 tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s 300 (311)
T d1nr0a1 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 300 (311)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEE
Confidence 99999999999987444 3333322222233344445566788886
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=3.1e-23 Score=246.98 Aligned_cols=265 Identities=15% Similarity=0.096 Sum_probs=192.6
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccc-------cc--eeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEec
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFP-------RA--LAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTS 2025 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p-------~s--ls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl 2025 (2342)
++|+.+++++ |++|++|+..++......... .. ......+...+.+++|+|+|++|++|+.||+|++||.
T Consensus 72 ~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~ 150 (388)
T d1erja_ 72 NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150 (388)
T ss_dssp TTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccc
Confidence 5788888876 779999997664322111100 00 0011123345778999999999999999999999999
Q ss_pred CCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcc
Q 000085 2026 DGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSR 2105 (2342)
Q Consensus 2026 ~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~ 2105 (2342)
..++.+..+.+|...|+++++++++..+++|+.++.+++||..+....... ..+...+....+.+++..+++++.++..
T Consensus 151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i 229 (388)
T d1erja_ 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAV 229 (388)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred cccccccccccccccccccccccccccccccccceeeeeeecccccccccc-ccccccccccccCCCCCeEEEEcCCCeE
Confidence 999999999999999999999999999999999999999999886544332 1222223333344577888888777643
Q ss_pred -ccccC---------CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE------------EEecC--
Q 000085 2106 -RRRIE---------GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR------------RLVGV-- 2161 (2342)
Q Consensus 2106 -~~~i~---------~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr------------sL~gh-- 2161 (2342)
.|+.. .......+|.+.|++++|+|++.+|++|+.||.|++||++++.... ....|
T Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (388)
T d1erja_ 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309 (388)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred EEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccc
Confidence 34432 1223345799999999999999999999999999999998765332 22333
Q ss_pred CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEE------ccCCCEEEEEe
Q 000085 2162 DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEI------SLDGHSALIGV 2221 (2342)
Q Consensus 2162 ~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLaf------SPDGk~LaSGS 2221 (2342)
.+..++++++|.+++.+..+|.|++|++...........|.+.|+++++ +|++.+|++|+
T Consensus 310 ~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 3688999999999999999999999998744444444569999999986 56899999987
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=3.1e-23 Score=249.92 Aligned_cols=227 Identities=14% Similarity=0.060 Sum_probs=181.0
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc--ce
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT--LE 2032 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl--l~ 2032 (2342)
++|+.+++++.|+.|++|+..++ .+.....+..|.. .+.+++|+|++++|++|+.|++|+|||+.++.. ..
T Consensus 17 ~dg~~la~~~~~~~i~iw~~~~~----~~~~~~~l~gH~~---~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 89 (371)
T d1k8kc_ 17 KDRTQIAICPNNHEVHIYEKSGN----KWVQVHELKEHNG---QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89 (371)
T ss_dssp TTSSEEEEECSSSEEEEEEEETT----EEEEEEEEECCSS---CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCC----CEEEEEEecCCCC---CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence 56788899999999999986441 1222223344444 456699999999999999999999999987653 45
Q ss_pred ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc---ccCCCCCCccccccCCCCCceeecCCCcc-ccc
Q 000085 2033 TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG---TIEPSSGMGTPGNSIGSSTPANASADKSR-RRR 2108 (2342)
Q Consensus 2033 tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~---~~~~~~~V~svs~SpDG~~Las~s~D~s~-~~~ 2108 (2342)
.+.+|...|+|++|+|++++|++|+.|++|++|++......... ...+...+.++.++|++..+++++.|+.. .|+
T Consensus 90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~ 169 (371)
T d1k8kc_ 90 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169 (371)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEe
Confidence 56789999999999999999999999999999999875433222 34566788899999999999988877653 233
Q ss_pred c--------------------CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--cEEE
Q 000085 2109 I--------------------EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD--AHAV 2166 (2342)
Q Consensus 2109 i--------------------~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~--vssL 2166 (2342)
. ........+|...|.+++|+|+++++++++.||+|++||+.+++.+..+..|. +..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~ 249 (371)
T d1k8kc_ 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 249 (371)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred eccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceee
Confidence 2 12345667899999999999999999999999999999999999999998875 6889
Q ss_pred EEecCCcEEEEEeCCCeEEEEEe
Q 000085 2167 SLSSEGVIMTWNKLQHTLSSFTL 2189 (2342)
Q Consensus 2167 SfSpDG~IlVwdssdGsI~I~dl 2189 (2342)
+|++||.+++.+. ++.+.+|..
T Consensus 250 ~fs~d~~~la~g~-d~~~~~~~~ 271 (371)
T d1k8kc_ 250 TFITESSLVAAGH-DCFPVLFTY 271 (371)
T ss_dssp EEEETTEEEEEET-TSSCEEEEE
T ss_pred eecCCCCEEEEEc-CCceEEEEe
Confidence 9999999887654 565555554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=2e-22 Score=231.54 Aligned_cols=264 Identities=13% Similarity=0.072 Sum_probs=191.1
Q ss_pred eeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 1998 SSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
.+++++|+| |++|+.||+|++||+.++ ..+|...|.+++++++ ..+++++.|++|++|++.....
T Consensus 15 ~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~~----- 79 (287)
T d1pgua2 15 GITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEF----- 79 (287)
T ss_dssp CEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEEC-----
T ss_pred ceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccccccccc-----
Confidence 455689987 999999999999998765 3589999999999865 5689999999999999876422
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccC--CceEEecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIE--GPIHVLRGHHREILCCCVSSDLGVVVSCSDSS-DLLLHSIRRGRL 2154 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~--~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG-tIrIWDLrTGkl 2154 (2342)
...+..+.+++++..++....+....+... ..+..+..+ .. +.++++++..+++++.|+ .+++|++.....
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~ 153 (287)
T d1pgua2 80 ---GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 153 (287)
T ss_dssp ---SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred ---ccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccce
Confidence 122445666777777777666655554432 233444332 33 445677888888887765 799999987766
Q ss_pred EEEEec---CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCC
Q 000085 2155 IRRLVG---VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGS 2230 (2342)
Q Consensus 2155 IrsL~g---h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i 2230 (2342)
...+.. ..+..++|+|+|.+++.+..+|.+++|++...... .....|...|.+++|+|++........++.
T Consensus 154 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~----- 228 (287)
T d1pgua2 154 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED----- 228 (287)
T ss_dssp EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC-----
T ss_pred eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCC-----
Confidence 665543 23789999999999999999999999999755443 334459999999999987654332211110
Q ss_pred cccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC-CeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 000085 2231 YDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-LKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQ 2309 (2342)
Q Consensus 2231 ~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-gk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGs 2309 (2342)
....+..|++|+|||+.+ .+.+..+. +|...|++++|+|++ .|++++.||.
T Consensus 229 --------------------------~l~sgs~D~~i~iw~~~~~~~~~~~~~-~h~~~V~~v~~~~~~-~l~s~g~D~~ 280 (287)
T d1pgua2 229 --------------------------LVATGSLDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLWETPS-TLVSSGADAC 280 (287)
T ss_dssp --------------------------EEEEEETTSCEEEEESSCTTCCEEETT-SSTTCEEEEEEEETT-EEEEEETTSC
T ss_pred --------------------------eeEeecCCCeEEEEECCCCCeEEEEeC-CCCCCeEEEEECCCC-EEEEEECCCe
Confidence 000011378899999977 44555555 899999999999987 5899999999
Q ss_pred EEEEeC
Q 000085 2310 LIVFTD 2315 (2342)
Q Consensus 2310 IrVWDi 2315 (2342)
|++|++
T Consensus 281 v~iW~i 286 (287)
T d1pgua2 281 IKRWNV 286 (287)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999984
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1e-22 Score=232.86 Aligned_cols=278 Identities=11% Similarity=0.013 Sum_probs=197.6
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce---ecccCCCCeEEEEecCC-CCEEEEEeCCCceEEEeccCC
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE---TASGHCAPVTCLALSSD-SNFLVTGSQDTTILLWRIHRA 2070 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~---tL~GHt~~VtcLAfSPD-G~~LaSGS~DGTVrVWDl~tg 2070 (2342)
+-..|++++|+|++++|++|+.||+|+|||+.++.... ...+|.++|+|++|+|+ +.+|+||+.|++|++|++...
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc
Confidence 33456779999999999999999999999998765433 33479999999999986 458999999999999999886
Q ss_pred ccccccccCCCCCCccccccCCCCCceeecCCCc-cccccC------CceEEecCC--CCCeEEEEEecCCCEEEEEeCC
Q 000085 2071 FTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRIE------GPIHVLRGH--HREILCCCVSSDLGVVVSCSDS 2141 (2342)
Q Consensus 2071 ~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i~------~~l~~L~GH--s~~Vt~VafSPDg~lLaSGS~D 2141 (2342)
....................++...++++..++. ..|+.. ........+ .....+..+.+++..+++++.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (342)
T d1yfqa_ 90 PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169 (342)
T ss_dssp SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEEST
T ss_pred cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCC
Confidence 5554443333333444445556666666666654 445431 112222222 2344566778889999999999
Q ss_pred CcEEEEECCCCeEEEEE---ecC--CcEE-EEEecCCcEEEEEeCCCeEEEEEeCCcee----------e-----eecCC
Q 000085 2142 SDLLLHSIRRGRLIRRL---VGV--DAHA-VSLSSEGVIMTWNKLQHTLSSFTLNGVLV----------A-----RAKLP 2200 (2342)
Q Consensus 2142 GtIrIWDLrTGklIrsL---~gh--~vss-LSfSpDG~IlVwdssdGsI~I~dlnG~~L----------~-----s~~~~ 2200 (2342)
|.|++||++++...... ... .... ..++.++..++.+..+|.+.+|..+.... . .....
T Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
T d1yfqa_ 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249 (342)
T ss_dssp TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCS
T ss_pred CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCc
Confidence 99999999876532221 111 1222 23345666777777778877777642110 0 01122
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEE
Q 000085 2201 LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHV 2280 (2342)
Q Consensus 2201 Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~t 2280 (2342)
|...|++++|+|++.+|++|+. ||.|+|||+.+++.+..
T Consensus 250 ~~~~v~~l~~sp~~~~lasg~~-----------------------------------------Dg~v~vWD~~~~~~l~~ 288 (342)
T d1yfqa_ 250 LAYPVNSIEFSPRHKFLYTAGS-----------------------------------------DGIISCWNLQTRKKIKN 288 (342)
T ss_dssp SCCCEEEEEECTTTCCEEEEET-----------------------------------------TSCEEEEETTTTEEEEE
T ss_pred ccccceeEEecCCccEEEEECC-----------------------------------------CCEEEEEECCCCcEEEE
Confidence 6778999999999999999973 77899999999999988
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2281 LKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2281 L~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
+... ..+..++|+|++.+|++++.|+.+++|..
T Consensus 289 ~~~~--~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 289 FAKF--NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCCC--SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred ecCC--CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 7623 35667888999999999999999888873
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.5e-21 Score=231.37 Aligned_cols=245 Identities=12% Similarity=0.089 Sum_probs=192.8
Q ss_pred EEEEEcCCCCEEEEEEcCC-cEEEEecCCc--ccceecccCC-CCeEEEEecC--CCCEEEEEeCCCceEEEeccCCccc
Q 000085 2000 AVVSITHDKEIITGGHVDG-SIKLLTSDGA--KTLETASGHC-APVTCLALSS--DSNFLVTGSQDTTILLWRIHRAFTS 2073 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DG-sIrVWDl~tg--kll~tL~GHt-~~VtcLAfSP--DG~~LaSGS~DGTVrVWDl~tg~~i 2073 (2342)
++++|+|+|+.|+.++.+. .|+.|+.... ..+..+.+|. ..|++++|+| +|.+|+||+.||+|+|||+..+...
T Consensus 21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~ 100 (325)
T d1pgua1 21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES 100 (325)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcce
Confidence 4588999999999886544 3566665443 3456677874 6899999998 5789999999999999999875332
Q ss_pred cccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCC
Q 000085 2074 RTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSD--SSDLLLHSIRR 2151 (2342)
Q Consensus 2074 ~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~--DGtIrIWDLrT 2151 (2342)
... .......+..|.++|.+++|++++.++++++. ++.+.+|+..+
T Consensus 101 ~~~--------------------------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~ 148 (325)
T d1pgua1 101 NSV--------------------------------EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS 148 (325)
T ss_dssp TEE--------------------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT
T ss_pred eee--------------------------------ecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc
Confidence 211 00112345678999999999999999887764 77899999999
Q ss_pred CeEEEEEecCC--cEEEEEecCCcE-EEEEeCCCeEEEEEeCCceeeeec---CCCCCCeEEEEEccC-CCEEEEEeCCC
Q 000085 2152 GRLIRRLVGVD--AHAVSLSSEGVI-MTWNKLQHTLSSFTLNGVLVARAK---LPLSGSIGCMEISLD-GHSALIGVNSS 2224 (2342)
Q Consensus 2152 GklIrsL~gh~--vssLSfSpDG~I-lVwdssdGsI~I~dlnG~~L~s~~---~~Hs~~ItsLafSPD-Gk~LaSGS~DG 2224 (2342)
++++..+.+|. +..++|++++.. ++.+..++.+++|+.......... ..|...|++++|+|+ +.++++|+.
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~-- 226 (325)
T d1pgua1 149 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-- 226 (325)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--
T ss_pred cccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc--
Confidence 99999998875 678999999875 566778999999998643333222 237888999999997 688888863
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe---cCCCEE
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALN---KDNTNL 2301 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS---PDG~~L 2301 (2342)
|+.|++||+.+++.+.++. +|..++.++.|+ +||++|
T Consensus 227 ---------------------------------------d~~i~iwd~~~~~~~~~l~-~~~~~v~~~~~s~~~~dg~~l 266 (325)
T d1pgua1 227 ---------------------------------------DRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDSQKF 266 (325)
T ss_dssp ---------------------------------------TCCEEEEETTTCCEEEECC-BTTBCCCSCEEEEEESSSSEE
T ss_pred ---------------------------------------ccceeeeeecccccccccc-ccccccccceeeeeccCCCEE
Confidence 6779999999999999998 788887776666 789999
Q ss_pred EEEeCCCcEEEEeCCCC
Q 000085 2302 LVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2302 aSGSsDGsIrVWDi~sL 2318 (2342)
++++.||.|+|||....
T Consensus 267 ~s~s~D~~i~iwd~~~~ 283 (325)
T d1pgua1 267 ATVGADATIRVWDVTTS 283 (325)
T ss_dssp EEEETTSEEEEEETTTT
T ss_pred EEEeCCCeEEEEECCCC
Confidence 99999999999997654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.4e-21 Score=237.12 Aligned_cols=282 Identities=11% Similarity=0.138 Sum_probs=189.7
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcC----CCCEEEEEEcCCcEEEEecCCcccc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITH----DKEIITGGHVDGSIKLLTSDGAKTL 2031 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSp----DGklLASGS~DGsIrVWDl~tgkll 2031 (2342)
.++.+++++.|+++|+|+..+...............+..++..+......+ ++.++++++.||.|++|++......
T Consensus 23 ~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~ 102 (393)
T d1sq9a_ 23 CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET 102 (393)
T ss_dssp CSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred eCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCce
Confidence 346788999999999999655322211111111122233322222222111 2347889999999999997654332
Q ss_pred ee----------cccCCCCeEEEEecCC-----CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCc
Q 000085 2032 ET----------ASGHCAPVTCLALSSD-----SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTP 2096 (2342)
Q Consensus 2032 ~t----------L~GHt~~VtcLAfSPD-----G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~L 2096 (2342)
.. ...|...+..++|.++ +.++++++.||++++|++................
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~------------- 169 (393)
T d1sq9a_ 103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP------------- 169 (393)
T ss_dssp CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC-------------
T ss_pred eeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc-------------
Confidence 21 1235566788888765 4689999999999999987532111100000000
Q ss_pred eeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec------C--CcEEEEE
Q 000085 2097 ANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG------V--DAHAVSL 2168 (2342)
Q Consensus 2097 as~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g------h--~vssLSf 2168 (2342)
.............+...++|++|+|++ ++++|+.||+|++||+.+++.+..+.. | .+.+++|
T Consensus 170 ---------~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 239 (393)
T d1sq9a_ 170 ---------TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239 (393)
T ss_dssp ---------EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ---------ceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence 000011122234566778999999987 889999999999999999998877653 3 3789999
Q ss_pred ecCCcEEEEEeCCC---eEEEEEeC-Cceeeee------------cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcc
Q 000085 2169 SSEGVIMTWNKLQH---TLSSFTLN-GVLVARA------------KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYD 2232 (2342)
Q Consensus 2169 SpDG~IlVwdssdG---sI~I~dln-G~~L~s~------------~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d 2232 (2342)
+|||++++.+..++ .+++|++. +..+... ..+|.+.|++++|+|||++|++|+.
T Consensus 240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~---------- 309 (393)
T d1sq9a_ 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW---------- 309 (393)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET----------
T ss_pred ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC----------
Confidence 99999999987775 58999986 3333322 1259999999999999999999973
Q ss_pred cccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE----EEEEecCCCEEE
Q 000085 2233 NIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT----ALALNKDNTNLL 2302 (2342)
Q Consensus 2233 ~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It----sLafSPDG~~La 2302 (2342)
|++|+|||+.+++++.++. +|...|. .++|++++..++
T Consensus 310 -------------------------------D~~v~vWd~~~g~~~~~l~-gH~~~v~~~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 310 -------------------------------DGKLRFWDVKTKERITTLN-MHCDDIEIEEDILAVDEHGDSLA 351 (393)
T ss_dssp -------------------------------TSEEEEEETTTTEEEEEEE-CCGGGCSSGGGCCCBCTTSCBCS
T ss_pred -------------------------------CCEEEEEECCCCCEEEEEC-CcCCcccCCccEEEECCCCCEEE
Confidence 7889999999999999998 8876554 355555555443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=6.3e-21 Score=220.31 Aligned_cols=257 Identities=16% Similarity=0.179 Sum_probs=202.7
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcc----c
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAK----T 2030 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgk----l 2030 (2342)
+++..+++++.|++|++|+..++. ....+..|.. .+.+++|+|+++++++|+.|+.+++|+..... .
T Consensus 65 ~~~~~l~sgs~Dg~v~iWd~~~~~------~~~~~~~~~~---~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 135 (340)
T d1tbga_ 65 TDSRLLVSASQDGKLIIWDSYTTN------KVHAIPLRSS---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTTE------EEEEEECSCS---CEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCE
T ss_pred CCCCEEEEEECCCceeeeecccce------eEEEEecccc---cEEeeEeeccceeeeeecccceeeccccccccccccc
Confidence 356788999999999999976531 1223333443 45679999999999999999999999976543 3
Q ss_pred ceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-ccccc
Q 000085 2031 LETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI 2109 (2342)
Q Consensus 2031 l~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i 2109 (2342)
...+.+|...+.+.... .+..++.+..|.+...|.......... .......+....+.+.+..++++..++. ..|+.
T Consensus 136 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~ 213 (340)
T d1tbga_ 136 SRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTT-FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp EEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEE-EECCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ceecccccccccccccc-ccccccccccccccccccccccccccc-ccccceeEeeeccccccceeEEeecCceEEEEEC
Confidence 45677888877776665 456888889999999998876433222 2334455666777778888888877764 44554
Q ss_pred --CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CcEEEEEecCCcEEEEEeCCCe
Q 000085 2110 --EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQHT 2183 (2342)
Q Consensus 2110 --~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh----~vssLSfSpDG~IlVwdssdGs 2183 (2342)
..++..+.+|...|++++|+|++.++++|+.||.|++||++....+..+... .+..++|+++|.+++.+..+|.
T Consensus 214 ~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~ 293 (340)
T d1tbga_ 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC
T ss_pred CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE
Confidence 4567888999999999999999999999999999999999999988877542 3788999999999999999999
Q ss_pred EEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 000085 2184 LSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVN 2222 (2342)
Q Consensus 2184 I~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~ 2222 (2342)
|++|++..........+|.+.|++++|+|+|.+|++|+.
T Consensus 294 i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence 999998754444455569999999999999999999974
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=6.9e-21 Score=222.76 Aligned_cols=268 Identities=10% Similarity=0.065 Sum_probs=197.8
Q ss_pred EEEcC-CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCC--ceEEEeccCCcccccccc
Q 000085 2002 VSITH-DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDT--TILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DG--TVrVWDl~tg~~i~t~~~ 2078 (2342)
-.||| ||+++|+++ +|.|++||+.++..++. +|...|++++|+|||++|++++.|. +|++||..++.
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~------- 77 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK------- 77 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-------
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-------
Confidence 57999 999999986 68999999998877664 6999999999999999998877654 79999998742
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
...+..|...|.+++|+|+++++++++.++.+++|++.+++....+
T Consensus 78 ----------------------------------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (360)
T d1k32a3 78 ----------------------------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123 (360)
T ss_dssp ----------------------------------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ----------------------------------EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeee
Confidence 3345679999999999999999999999999999999999998888
Q ss_pred ecCC--cEEEEEecCCcEEEEEeC----------CCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2159 VGVD--AHAVSLSSEGVIMTWNKL----------QHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2159 ~gh~--vssLSfSpDG~IlVwdss----------dGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
..+. ...++|+|||+.+++... ++.+++|+..+...... ..|...+.+++|+|||++|++++.++..
T Consensus 124 ~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~ 202 (360)
T d1k32a3 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLD 202 (360)
T ss_dssp ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCC
T ss_pred ecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCce
Confidence 7764 578999999999987532 24588999886554432 3367788999999999999999876653
Q ss_pred CCCCcc----------ccccc--CCCCCCcccccccccc------------------------------------ccCC-
Q 000085 2227 NNGSYD----------NIQGL--NSKQSGTEDFDLASDQ------------------------------------SVDN- 2257 (2342)
Q Consensus 2227 d~~i~d----------~Lw~l--~~~~~~~iaFspd~~~------------------------------------s~ss- 2257 (2342)
..+... +.+.+ .........+.++... ....
T Consensus 203 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (360)
T d1k32a3 203 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282 (360)
T ss_dssp CEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECC
T ss_pred EcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEE
Confidence 222110 00000 0000000111111000 0000
Q ss_pred --------CCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2258 --------NRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2258 --------~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
......++.|++||+.+++.. .|.+.|.+++|||||++|++++.||.|++|+.....
T Consensus 283 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~ 347 (360)
T d1k32a3 283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347 (360)
T ss_dssp CCCSHHHHHHCCCCCEEEEEEETTTCCEE-----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred ecCCCeeEEEecCCCCEEEEEECCCCeEE-----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence 001124789999999998753 234569999999999999999999999999976553
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=1.4e-19 Score=219.50 Aligned_cols=253 Identities=14% Similarity=0.062 Sum_probs=177.3
Q ss_pred CcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCccc------ceecccCCCCeEEEE------ecC-CCCEEEEEeCCCc
Q 000085 1995 GIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKT------LETASGHCAPVTCLA------LSS-DSNFLVTGSQDTT 2061 (2342)
Q Consensus 1995 gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkl------l~tL~GHt~~VtcLA------fSP-DG~~LaSGS~DGT 2061 (2342)
|-..+.+++++ ++++++|+.|++|+|||..+... ......|...+..+. .+. ++.++++++.||+
T Consensus 13 H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~ 90 (393)
T d1sq9a_ 13 HDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 90 (393)
T ss_dssp SSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred ccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCc
Confidence 33445557765 47899999999999999776532 122233544433322 222 2457889999999
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecC-----CCEEE
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSD-----LGVVV 2136 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPD-----g~lLa 2136 (2342)
|++|++........... . .........+...+..++|.++ +.+++
T Consensus 91 v~~w~~~~~~~~~~~~~--------------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (393)
T d1sq9a_ 91 LLFYRITREDETKKVIF--------------------E----------KLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 140 (393)
T ss_dssp EEEEEEEECTTTCCEEE--------------------E----------EECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred EEEEEccCCCceeeeec--------------------c----------ccceeeeccCCCceEEEEEecCCCcccccEEE
Confidence 99999876432211100 0 0000011234556777777765 46789
Q ss_pred EEeCCCcEEEEECCCCe---------------EEEEEecC-----CcEEEEEecCCcEEEEEeCCCeEEEEEeC-Cceee
Q 000085 2137 SCSDSSDLLLHSIRRGR---------------LIRRLVGV-----DAHAVSLSSEGVIMTWNKLQHTLSSFTLN-GVLVA 2195 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGk---------------lIrsL~gh-----~vssLSfSpDG~IlVwdssdGsI~I~dln-G~~L~ 2195 (2342)
+++.||++++||+.... ........ .+.+++++|+| +++.+..|+.|++|++. ++.+.
T Consensus 141 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~ 219 (393)
T d1sq9a_ 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219 (393)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred EEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc
Confidence 99999999999985321 11111111 15789999998 66788899999999986 33333
Q ss_pred ee-----cCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEE
Q 000085 2196 RA-----KLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFL 2270 (2342)
Q Consensus 2196 s~-----~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIW 2270 (2342)
.. ...|..+|++++|+|||++|++|+.|+. .+.|++|
T Consensus 220 ~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t--------------------------------------~~~i~lw 261 (393)
T d1sq9a_ 220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--------------------------------------FGCITLY 261 (393)
T ss_dssp EEECCC---CCCCCEEEEEECSSTTEEEEEEEETT--------------------------------------EEEEEEE
T ss_pred ccccccccccccceEEEcccccccceeeeecCCCC--------------------------------------cceeeec
Confidence 22 2348999999999999999999986544 3569999
Q ss_pred ECCCCeEEEEEe------------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2271 DLHTLKVFHVLK------------LGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2271 DL~Tgk~L~tL~------------lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
|+.+++++.++. .+|...|++++|+||+++|++|+.||+|+|||..+.
T Consensus 262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 999999888874 279999999999999999999999999999997654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1e-18 Score=200.42 Aligned_cols=277 Identities=17% Similarity=0.203 Sum_probs=193.8
Q ss_pred EecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCC
Q 000085 2023 LTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2023 WDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
|+..+.++..+++||++.|.+ +++++|++|+|||.||+|+|||+.+++...++ .+|...+.++.++++ .+++++.|
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~~~~--~l~s~s~D 76 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN--IIISGSTD 76 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEETT--EEEEEETT
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCCEEEEEeCCC--ccccceec
Confidence 555666788899999999864 35567999999999999999999998766554 457778888888754 77777777
Q ss_pred Cccc-cccCCc--eEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEe
Q 000085 2103 KSRR-RRIEGP--IHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2103 ~s~~-~~i~~~--l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwds 2179 (2342)
+... |..... ......+...+..... ....++.+..|+.+.+|+..+++....+................++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (342)
T d2ovrb2 77 RTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 154 (342)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred ccccccccccccceecccccceeEeeeec--ccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence 6543 444332 2333344445554443 4567888899999999999999888887766655566666777777788
Q ss_pred CCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC---------Cccccccc
Q 000085 2180 LQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS---------GTEDFDLA 2250 (2342)
Q Consensus 2180 sdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~---------~~iaFspd 2250 (2342)
.++.+++|+............|...+.+ +++++.++++|+.|+. .++|++..... ....+.++
T Consensus 155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~------i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 226 (342)
T d2ovrb2 155 YDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTS------IRVWDVETGNCIHTLTGHQSLTSGMELK 226 (342)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSC------EEEEETTTCCEEEEECCCCSCEEEEEEE
T ss_pred CCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCe------EEEeecccceeeeEecccccceeEEecC
Confidence 8899999998755544444456665555 4557899999998887 44555544321 11111111
Q ss_pred cccccCCCCccCCCCeEEEEECCCCeEEEEEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2251 SDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL--GEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2251 ~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l--gHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
+ .....+..|+.|++||+...+....+.. .|...+.++.+ ++.++++|+.||.|++||..+..
T Consensus 227 ~----~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 227 D----NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp T----TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCC
T ss_pred C----CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCC
Confidence 1 1122234699999999999988888763 24455666555 56789999999999999976553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.80 E-value=9.3e-18 Score=191.33 Aligned_cols=279 Identities=9% Similarity=0.122 Sum_probs=206.2
Q ss_pred EecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceecccCCC
Q 000085 1961 ASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASGHCA 2039 (2342)
Q Consensus 1961 aSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~GHt~ 2039 (2342)
++.+.|++|++|+..++... ..+... .....++|+|||++| ++++.++.|++||+.+++.+.++..|..
T Consensus 6 V~~~~~~~v~v~D~~t~~~~------~~i~~g----~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~ 75 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVT------ATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS 75 (301)
T ss_dssp EEETTTTEEEEEETTTTEEE------EEEECS----SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred EEECCCCEEEEEECCCCeEE------EEEECC----CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc
Confidence 45667889999997763221 122211 123458999999976 5777899999999999999999888765
Q ss_pred CeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecC
Q 000085 2040 PVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRG 2118 (2342)
Q Consensus 2040 ~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~G 2118 (2342)
+..++|++++.+++ ++..++.+.+|+..++.. ...+.
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~- 113 (301)
T d1l0qa2 76 -PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV----------------------------------------AGTVK- 113 (301)
T ss_dssp -EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----------------------------------------EEEEE-
T ss_pred -ccccccccccccccccccccceeeeccccccee----------------------------------------eeecc-
Confidence 68899999998655 556778999999887532 12222
Q ss_pred CCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEEEEEeCC-CeEEEEEeCCceee
Q 000085 2119 HHREILCCCVSSDLGVVV-SCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIMTWNKLQ-HTLSSFTLNGVLVA 2195 (2342)
Q Consensus 2119 Hs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~IlVwdssd-GsI~I~dlnG~~L~ 2195 (2342)
+...+.+++|+|++..++ ++..++.+.+|+..++..+..+..+. ...+++++++..++....+ +.+.++......+.
T Consensus 114 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (301)
T d1l0qa2 114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (301)
T ss_dssp CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeee
Confidence 345678899999998774 56678899999999999998887654 6788999999877666544 56666666554443
Q ss_pred eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCC
Q 000085 2196 RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTL 2275 (2342)
Q Consensus 2196 s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tg 2275 (2342)
... .+...+..++++++|..+++++.+.. ++.|.+||+.++
T Consensus 194 ~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~--------------------------------------~~~v~v~D~~t~ 234 (301)
T d1l0qa2 194 DTV-KVEAAPSGIAVNPEGTKAYVTNVDKY--------------------------------------FNTVSMIDTGTN 234 (301)
T ss_dssp EEE-ECSSEEEEEEECTTSSEEEEEEECSS--------------------------------------CCEEEEEETTTT
T ss_pred ecc-cccCCcceeeccccccccccccccce--------------------------------------eeeeeeeecCCC
Confidence 322 24567889999999999987753222 578999999999
Q ss_pred eEEEEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCChhhhhhhhhccccCCC
Q 000085 2276 KVFHVLKLGEGQDITALALNKDNTNL-LVSTADKQLIVFTDPALSLKVVDQMLKLGWEGDG 2335 (2342)
Q Consensus 2276 k~L~tL~lgHs~~ItsLafSPDG~~L-aSGSsDGsIrVWDi~sLs~k~LdQLLk~GWegDG 2335 (2342)
+.+..+. +...+.+++|+|||++| ++++.|++|++||..+.. +...+..|+.+.+
T Consensus 235 ~~~~~~~--~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~---~~~~~~vg~~P~~ 290 (301)
T d1l0qa2 235 KITARIP--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT---ITATMAVGKNPYA 290 (301)
T ss_dssp EEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECSSSEEC
T ss_pred eEEEEEc--CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe---EEEEEeCCCCCcE
Confidence 9998887 44578999999999987 567789999999976552 2333455655544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=3.1e-19 Score=203.73 Aligned_cols=247 Identities=6% Similarity=0.041 Sum_probs=171.9
Q ss_pred ccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccc
Q 000085 2029 KTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRR 2108 (2342)
Q Consensus 2029 kll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~ 2108 (2342)
+.++..++|.+.|++|+|+|++++|+|||.||+|+|||+......
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~----------------------------------- 46 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------------------------------- 46 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-----------------------------------
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-----------------------------------
Confidence 456778899999999999999999999999999999999874211
Q ss_pred cCCceEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCC---cEEEEEecCCcEEEEEeCCCeE
Q 000085 2109 IEGPIHVLRGHHREILCCCVSSD-LGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---AHAVSLSSEGVIMTWNKLQHTL 2184 (2342)
Q Consensus 2109 i~~~l~~L~GHs~~Vt~VafSPD-g~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---vssLSfSpDG~IlVwdssdGsI 2184 (2342)
.......+|.++|++++|+++ +.++++|+.||+|++|++..+........+. .......+++..++....++.+
T Consensus 47 --~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (342)
T d1yfqa_ 47 --VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124 (342)
T ss_dssp --EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEE
T ss_pred --eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 112233479999999999986 4579999999999999999887766665432 3456667788888888889999
Q ss_pred EEEEeCCc----eeeeecCC--CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccc--ccc-----
Q 000085 2185 SSFTLNGV----LVARAKLP--LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFD--LAS----- 2251 (2342)
Q Consensus 2185 ~I~dlnG~----~L~s~~~~--Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFs--pd~----- 2251 (2342)
.+|++... ........ +........+.+++..+++++.++. .++|++........... ...
T Consensus 125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~------i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (342)
T d1yfqa_ 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ------VQWFRLPLCEDDNGTIEESGLKYQIRD 198 (342)
T ss_dssp EEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE------EEEEESSCCTTCCCEEEECSCSSCEEE
T ss_pred ceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCc------EEEEecccCcccceeeeecccccceee
Confidence 99987421 11111111 3345566778889999999987776 34555544321111000 000
Q ss_pred ----ccccCCCCccCCCCeEEEEECCCCeE---------EEEE-----ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 000085 2252 ----DQSVDNNRFDFPSPSICFLDLHTLKV---------FHVL-----KLGEGQDITALALNKDNTNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2252 ----~~s~ss~~ias~DGsIrIWDL~Tgk~---------L~tL-----~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVW 2313 (2342)
............||.+.+|+...... .... ..+|...|++++|+|++.+|++|+.||.|+||
T Consensus 199 ~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vW 278 (342)
T d1yfqa_ 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred eEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEE
Confidence 00011112223689999998864321 1111 11466789999999999999999999999999
Q ss_pred eCCCC
Q 000085 2314 TDPAL 2318 (2342)
Q Consensus 2314 Di~sL 2318 (2342)
|..+.
T Consensus 279 D~~~~ 283 (342)
T d1yfqa_ 279 NLQTR 283 (342)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 97654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.2e-18 Score=197.46 Aligned_cols=231 Identities=19% Similarity=0.203 Sum_probs=180.2
Q ss_pred cccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-cc
Q 000085 2028 AKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-RR 2106 (2342)
Q Consensus 2028 gkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~~ 2106 (2342)
.++++++.||.++|+|++|+| |+|||.||+|++||+.++. ..|...+.++.+++++. +++++.|+. +.
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~~~-~~s~s~D~~v~~ 71 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKAQE-YSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCSTTC-CEEEETTTEEEE
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecCCCe-EEEEeecccccc
Confidence 467889999999999999987 9999999999999988753 34666788888886654 566666553 44
Q ss_pred cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC-CeEE
Q 000085 2107 RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ-HTLS 2185 (2342)
Q Consensus 2107 ~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssd-GsI~ 2185 (2342)
|+... ..+...+.++++++++..+++++ ++.+.+|+..+++.+..+..+. ...++++++..++.+..+ +.++
T Consensus 72 w~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~ 144 (287)
T d1pgua2 72 NGITK-----HEFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNS-PGSAVSLSQNYVAVGLEEGNTIQ 144 (287)
T ss_dssp TTEEE-----EECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECSS-CEEEEEECSSEEEEEETTTSCEE
T ss_pred ccccc-----cccccceeeeeeccCCceEEEee-cccceeeeccceeeeeeccccc-eeeeeeccCcceeeeccccceee
Confidence 54322 12345678899998887776654 5678899999999998887543 456778888877777666 4799
Q ss_pred EEEeCCceee-eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2186 SFTLNGVLVA-RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2186 I~dlnG~~L~-s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
+|++...... .....|...+++++|+|+|.+|++|+. |
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-----------------------------------------d 183 (287)
T d1pgua2 145 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-----------------------------------------M 183 (287)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-----------------------------------------T
T ss_pred eeeccccceeeeeeeccCCceeEEEeccCccccccccc-----------------------------------------c
Confidence 9998654333 333448889999999999999999973 6
Q ss_pred CeEEEEECCCCeEEEEEecCCCCCeEEEEEecC----------CCEEEEEeCCCcEEEEeCCC
Q 000085 2265 PSICFLDLHTLKVFHVLKLGEGQDITALALNKD----------NTNLLVSTADKQLIVFTDPA 2317 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD----------G~~LaSGSsDGsIrVWDi~s 2317 (2342)
|.|++||+.+++.......+|...|++++|+|+ +.+|++|+.||+|+||+...
T Consensus 184 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred ccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence 779999999998776655589999999999874 46899999999999999654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.79 E-value=5.2e-18 Score=208.45 Aligned_cols=313 Identities=9% Similarity=0.026 Sum_probs=207.2
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccce-----ec
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLE-----TA 2034 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~-----tL 2034 (2342)
+++.+.|++|++|+..++... ..+..+ ..+..++|||||++|++++.|++|++||+.+++... ..
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~~------~~l~~g----~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~ 104 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKIV------KVIDTG----YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104 (426)
T ss_dssp EEEETTTTEEEEEETTTCSEE------EEEECC----SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred EEEEcCCCEEEEEECCCCcEE------EEEeCC----CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence 467888999999998763221 223222 235669999999999999999999999999987543 23
Q ss_pred ccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccccc----------cCCCCCCccccccCCCCCceeecCCC
Q 000085 2035 SGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRTGT----------IEPSSGMGTPGNSIGSSTPANASADK 2103 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t~~----------~~~~~~V~svs~SpDG~~Las~s~D~ 2103 (2342)
.+|.+.+.+++|+|||++|+ ++..++++++||..++....... .........+..++++..+.....+.
T Consensus 105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~ 184 (426)
T d1hzua2 105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 184 (426)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence 46888889999999999875 55689999999999876543321 01122233445555555554443332
Q ss_pred ccc--ccc---CCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEEecCC----cE---------
Q 000085 2104 SRR--RRI---EGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGRLIRRLVGVD----AH--------- 2164 (2342)
Q Consensus 2104 s~~--~~i---~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGklIrsL~gh~----vs--------- 2164 (2342)
... +.. ........++...+..+.|+|++++++++. .+..+.++|..+++.+..+.... ..
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (426)
T d1hzua2 185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264 (426)
T ss_dssp TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence 211 111 122334456788899999999999877665 56679999999999988775421 11
Q ss_pred ----EEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCC
Q 000085 2165 ----AVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSK 2240 (2342)
Q Consensus 2165 ----sLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~ 2240 (2342)
....+.++.+.+|+.....+..+. ++ ......+|...+..++|+|||+++++...
T Consensus 265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~--~~-~~~~l~g~~~~v~~v~~sPdg~~l~v~~~------------------ 323 (426)
T d1hzua2 265 GPVWSTSHLGDGSISLIGTDPKNHPQYA--WK-KVAELQGQGGGSLFIKTHPKSSHLYVDTT------------------ 323 (426)
T ss_dssp EEEEEEECTTTCEEEEEECCTTTCTTTB--TS-EEEEEECSSSCCCCEECCTTCSEEEECCT------------------
T ss_pred CceEEeccCCCceEEEeecccccccccc--ce-EeEEEecCCCceeEEEcCCCCceEEEeec------------------
Confidence 122234455555554333211111 11 22223348899999999999999985421
Q ss_pred CCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe--------cCCCCCeEEEEEecCCCEEEEE-----eCC
Q 000085 2241 QSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK--------LGEGQDITALALNKDNTNLLVS-----TAD 2307 (2342)
Q Consensus 2241 ~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~--------lgHs~~ItsLafSPDG~~LaSG-----SsD 2307 (2342)
+.++ ...|++|+|||+.+++...++. ..|...|.+++|||||++++++ +.|
T Consensus 324 ------~~~s----------~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~ 387 (426)
T d1hzua2 324 ------FNPD----------ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDS 387 (426)
T ss_dssp ------TCSS----------HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSC
T ss_pred ------CCCC----------cccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCC
Confidence 0000 1126789999999988766552 1356679999999999987543 368
Q ss_pred CcEEEEeCCCCC
Q 000085 2308 KQLIVFTDPALS 2319 (2342)
Q Consensus 2308 GsIrVWDi~sLs 2319 (2342)
|.|+|||..+++
T Consensus 388 ~~i~v~D~~T~k 399 (426)
T d1hzua2 388 SALVVVDDKTLK 399 (426)
T ss_dssp CEEEEEETTTTE
T ss_pred CeEEEEECCCCe
Confidence 899999987774
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.1e-17 Score=187.43 Aligned_cols=247 Identities=18% Similarity=0.252 Sum_probs=182.6
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS 2035 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~ 2035 (2342)
+|..+++++.|++|++|+..++ .....+..|...+ .+++ +++++|++|+.|+.|++|++..+.......
T Consensus 24 d~~~l~sgs~Dg~i~vWd~~~~------~~~~~l~~H~~~V---~~v~--~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~ 92 (293)
T d1p22a2 24 DDQKIVSGLRDNTIKIWDKNTL------ECKRILTGHTGSV---LCLQ--YDERVIITGSSDSTVRVWDVNTGEMLNTLI 92 (293)
T ss_dssp CSSEEEEEESSSCEEEEESSSC------CEEEEECCCSSCE---EEEE--CCSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred cCCEEEEEeCCCeEEEEECCCC------cEEEEEecCCCCE---eeee--cccceeeccccccccccccccccccccccc
Confidence 6788999999999999997652 2223344455443 4454 578899999999999999999988777666
Q ss_pred cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc--ccCCCCCCccccccCCCCCceeecCCCc-ccccc--C
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG--TIEPSSGMGTPGNSIGSSTPANASADKS-RRRRI--E 2110 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~--~~~~~~~V~svs~SpDG~~Las~s~D~s-~~~~i--~ 2110 (2342)
.+.....+ +.+....+++++.++.+.+|+.......... ...+...+....+ ....+.+++.++. ..|+. .
T Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~ 168 (293)
T d1p22a2 93 HHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC 168 (293)
T ss_dssp CCCSCEEE--EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred cccccccc--ccccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCceeeecCCCC
Confidence 55544433 4456778999999999999999876543322 2233344433333 3444555555554 34544 4
Q ss_pred CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2111 GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2111 ~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
+.+..+.+|...|..+.++ +..+++++.||+|++||++++..+..+.++......+++++..++.+..+|.+++|++.
T Consensus 169 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~ 246 (293)
T d1p22a2 169 EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246 (293)
T ss_dssp CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECC
Confidence 5678889999999888775 57899999999999999999999999998887777889999999999999999999974
Q ss_pred C---------ceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2191 G---------VLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2191 G---------~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
. .........|.+.|++++| ++.+|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s 284 (293)
T d1p22a2 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS 284 (293)
T ss_dssp HHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred CCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEe
Confidence 2 1222333459999999998 467888876
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=1.3e-17 Score=206.90 Aligned_cols=331 Identities=10% Similarity=0.022 Sum_probs=220.1
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc-----eec
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL-----ETA 2034 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll-----~tL 2034 (2342)
+++.+.++++++|+..++... ..+..+ ..+..++|||||+++++++.|++|++||+.+++.. ...
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~------~~~~~g----~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~ 104 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIK------TVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 104 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEE------EEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred EEEEcCCCEEEEEECCCCcEE------EEEeCC----CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence 467888999999998773222 222222 23566999999999999999999999999887643 333
Q ss_pred ccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccc----------cCCCCCCccccccCCCCCceeecCCC
Q 000085 2035 SGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGT----------IEPSSGMGTPGNSIGSSTPANASADK 2103 (2342)
Q Consensus 2035 ~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~----------~~~~~~V~svs~SpDG~~Las~s~D~ 2103 (2342)
.+|.+.+.+.+|+|||++| ++++.+++|+|||..++....... .........+.++++|..+++...+.
T Consensus 105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~ 184 (432)
T d1qksa2 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 184 (432)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence 5688888889999999986 788899999999999876554431 11233344567788888765544332
Q ss_pred --ccccccC--CceEEe-cCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEEEecCC-------cEEEEEec
Q 000085 2104 --SRRRRIE--GPIHVL-RGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRRLVGVD-------AHAVSLSS 2170 (2342)
Q Consensus 2104 --s~~~~i~--~~l~~L-~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrsL~gh~-------vssLSfSp 2170 (2342)
+..++.. ...... ..+...+.+++|+|+|+++++++. ++.+.++|..+++.+..+.... ........
T Consensus 185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 264 (432)
T d1qksa2 185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT 264 (432)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence 2333332 222222 235567889999999998776664 5689999999999888775421 23333444
Q ss_pred CCcEEEEE-eCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCC-----Cc
Q 000085 2171 EGVIMTWN-KLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQS-----GT 2244 (2342)
Q Consensus 2171 DG~IlVwd-ssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~-----~~ 2244 (2342)
.|...... ..++.+.+|...... ...|...+....+++++..+++++.+.. ..+|....... ..
T Consensus 265 ~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~------~~lw~~~~~~~~~~~~~s 334 (432)
T d1qksa2 265 FGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNS------QYLYVDATLNPEAEISGS 334 (432)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTC------SEEEEECTTCSSHHHHTC
T ss_pred CCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCc------cceeecccCCCCCCeeeE
Confidence 44433333 235677777654321 1226678999999999998888876555 33443322110 11
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEe-----CCCcEEEEeCCCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVST-----ADKQLIVFTDPALS 2319 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGS-----sDGsIrVWDi~sLs 2319 (2342)
+.+ ++.. .......|+.+++||+.++..+ . .|...|.+++|||||++|+++. .||.|+|||..+++
T Consensus 335 v~v-pDg~----~la~~s~d~~~k~w~~~~~~~l---~-~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 335 VAV-FDIK----AMTGDGSDPEFKTLPIAEWAGI---T-EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 405 (432)
T ss_dssp EEE-EEGG----GCCCSSSCCCEEEECHHHHHTC---C-SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EEE-Eech----hhcccccCCceEeccccccccc---C-CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence 111 3322 2223345899999998665322 2 5677899999999999887654 47899999987775
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=4.1e-17 Score=190.40 Aligned_cols=268 Identities=10% Similarity=-0.027 Sum_probs=190.0
Q ss_pred CCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCC--cEEEEecCCccccee
Q 000085 1956 HGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDG--SIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1956 ~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DG--sIrVWDl~tgkll~t 2033 (2342)
+|+.+++++.+ .+.+|+..++.. .. ..|. ..+.+++|+|||++|++++.+. .|++||..+++.. .
T Consensus 14 dG~~~a~~~~g-~v~v~d~~~~~~-------~~-~~~~---~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~ 80 (360)
T d1k32a3 14 DGDLIAFVSRG-QAFIQDVSGTYV-------LK-VPEP---LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-K 80 (360)
T ss_dssp GGGCEEEEETT-EEEEECTTSSBE-------EE-CSCC---SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-E
T ss_pred CCCEEEEEECC-eEEEEECCCCcE-------EE-ccCC---CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-E
Confidence 68888887654 789998654211 11 1233 3456799999999887766553 7999999887654 5
Q ss_pred cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc---------
Q 000085 2034 ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS--------- 2104 (2342)
Q Consensus 2034 L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s--------- 2104 (2342)
+..|...|.+++|+|||++|++++.++.+++|++.++..... ...+...+..++++|+|+.++....+..
T Consensus 81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred eeCCCceEEeeeecccccccceeccccccccccccccceeee-eecccccccchhhccceeeeeeeccccccceeecccc
Confidence 678999999999999999999999999999999988765433 3445667788999999999875543211
Q ss_pred --cccccC-CceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeE-------EEEEecCC------------
Q 000085 2105 --RRRRIE-GPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRL-------IRRLVGVD------------ 2162 (2342)
Q Consensus 2105 --~~~~i~-~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGkl-------IrsL~gh~------------ 2162 (2342)
..|+.. .....+..|...+.+++|+|+|+.|++++.|+.+.+||...... ...+..+.
T Consensus 160 ~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 239 (360)
T d1k32a3 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239 (360)
T ss_dssp EEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred ceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence 123332 33455566778899999999999999999999999999765432 22221110
Q ss_pred --------------------------cEEEEEecCCcEEEEE-------------eCCCeEEEEEeCCceeeeecCCCCC
Q 000085 2163 --------------------------AHAVSLSSEGVIMTWN-------------KLQHTLSSFTLNGVLVARAKLPLSG 2203 (2342)
Q Consensus 2163 --------------------------vssLSfSpDG~IlVwd-------------ssdGsI~I~dlnG~~L~s~~~~Hs~ 2203 (2342)
...+...+++...+.. ..++.+++|++.+..+.. |.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~ 315 (360)
T d1k32a3 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKN 315 (360)
T ss_dssp GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEE
T ss_pred CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE----ecC
Confidence 0123333333322221 234578889887654432 557
Q ss_pred CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe
Q 000085 2204 SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK 2282 (2342)
Q Consensus 2204 ~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~ 2282 (2342)
.|.+++|+|||++|++++. ||.|++||+.+++...++.
T Consensus 316 ~v~~~~~SpDG~~l~~~~~-----------------------------------------Dg~i~v~d~~~~~~~~~~~ 353 (360)
T d1k32a3 316 NLTDLRLSADRKTVMVRKD-----------------------------------------DGKIYTFPLEKPEDERTVE 353 (360)
T ss_dssp EEEEEEECTTSCEEEEEET-----------------------------------------TSCEEEEESSCTTSCEECC
T ss_pred CcCEEEECCCCCEEEEEEC-----------------------------------------CCeEEEEECCCCCcceEEE
Confidence 7999999999999999873 6779999999887666655
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=2e-17 Score=190.80 Aligned_cols=263 Identities=10% Similarity=0.009 Sum_probs=184.8
Q ss_pred CEEEEEEcCCcEEEEecCCcccceeccc--CCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccC----CC
Q 000085 2009 EIITGGHVDGSIKLLTSDGAKTLETASG--HCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIE----PS 2081 (2342)
Q Consensus 2009 klLASGS~DGsIrVWDl~tgkll~tL~G--Ht~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~----~~ 2081 (2342)
+++++++.|++|+|||+.+++.+.++.. +...+.+++|+|||+++ ++++.|+.|.+||+.+++........ ..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 4799999999999999999999988865 34568899999999987 57788999999999998766544211 12
Q ss_pred CCCccccccCCCCCceeecCCCcc-------------cccc--CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSR-------------RRRI--EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLL 2146 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~-------------~~~i--~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrI 2146 (2342)
..+..++++|+++.++....+... .++. ......+. +...+.+++|+++|+++++++.| +.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCC--cce
Confidence 345678899999988666543211 1211 12233333 44568899999999999988754 778
Q ss_pred EECCCCeEEEEEecCC-cEEEEEecCC-----------cEEEEE-------------eCCCeEEEEEeC-CceeeeecCC
Q 000085 2147 HSIRRGRLIRRLVGVD-AHAVSLSSEG-----------VIMTWN-------------KLQHTLSSFTLN-GVLVARAKLP 2200 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh~-vssLSfSpDG-----------~IlVwd-------------ssdGsI~I~dln-G~~L~s~~~~ 2200 (2342)
||..+++....+..+. .....+++++ ...... ...+.+.+|+.. +........+
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence 9999999988876532 1111111111 111111 011235555553 2222222223
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEE
Q 000085 2201 LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHV 2280 (2342)
Q Consensus 2201 Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~t 2280 (2342)
+...+.++.+++++.+++.+ ++.|++||+.+++.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~i~v~d~~~~~~~~~ 275 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGA-------------------------------------------YNVLESFDLEKNASIKR 275 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE-------------------------------------------ESEEEEEETTTTEEEEE
T ss_pred CCcceEEEEecccceEEEEc-------------------------------------------cccEEEEECCCCcEEEE
Confidence 66677778888888777644 46799999999999998
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2281 LKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2281 L~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
+. +...+.+++|+|||++|++++.||.|+|||..+++
T Consensus 276 ~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 276 VP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred Ec--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 87 55678999999999999999999999999987764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.74 E-value=7.7e-18 Score=195.12 Aligned_cols=270 Identities=11% Similarity=0.055 Sum_probs=186.1
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecc-cCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
++|+++++++++++.|++|.|||+.+++.+.++. .|...+.+++|+|||+++ ++++.+++|.+||+.+++........
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 4679999999999999999999999999999886 456678999999999987 56678999999999998665544211
Q ss_pred -----CCCCCccccccCCCCCceeecCCCcc-------------cccc--CCceEEecC--CCCCeEEEEEecCCCEEEE
Q 000085 2080 -----PSSGMGTPGNSIGSSTPANASADKSR-------------RRRI--EGPIHVLRG--HHREILCCCVSSDLGVVVS 2137 (2342)
Q Consensus 2080 -----~~~~V~svs~SpDG~~Las~s~D~s~-------------~~~i--~~~l~~L~G--Hs~~Vt~VafSPDg~lLaS 2137 (2342)
....+..+++++||+.+.+...+... .++. ......+.. ....+..+.+++++.++++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 12346678899999988665433211 1111 111111111 2234556667777766654
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCC-cEEEEEecCCcEE-----------EEE---------------eCCCeEEEEEeC
Q 000085 2138 CSDSSDLLLHSIRRGRLIRRLVGVD-AHAVSLSSEGVIM-----------TWN---------------KLQHTLSSFTLN 2190 (2342)
Q Consensus 2138 GS~DGtIrIWDLrTGklIrsL~gh~-vssLSfSpDG~Il-----------Vwd---------------ssdGsI~I~dln 2190 (2342)
+ +.+.+||+.+++.+..+..+. ...+.+++++..+ ++. .....+.+|+..
T Consensus 162 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
T d1jmxb_ 162 G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238 (346)
T ss_dssp S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred C---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC
Confidence 3 468999999999998886532 2333344443321 111 111234555554
Q ss_pred C-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEE
Q 000085 2191 G-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICF 2269 (2342)
Q Consensus 2191 G-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrI 2269 (2342)
. ........+|...+.++.+++++.+++.+. ++.|.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~v~v 276 (346)
T d1jmxb_ 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV------------------------------------------LNRLAK 276 (346)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE------------------------------------------ESEEEE
T ss_pred CCceEEEEeecccceeEEEEEeCCCCEEEEec------------------------------------------CCeEEE
Confidence 2 222222333667777778887777766553 457999
Q ss_pred EECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2270 LDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2270 WDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
||..+++.+..+. +...+.+++|+|||++|++++.||.|+|||..++
T Consensus 277 ~d~~~~~~~~~~~--~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~ 323 (346)
T d1jmxb_ 277 YDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323 (346)
T ss_dssp EETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EECCCCcEEEEEc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence 9999999998887 3456999999999999999999999999997665
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.74 E-value=1.4e-17 Score=204.48 Aligned_cols=267 Identities=11% Similarity=0.039 Sum_probs=189.2
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
++++.+.||+|+|||+.+++.+.++..|. .+..++|||||++|++++.|++|++||+.+++....
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~-------------- 98 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV-------------- 98 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--------------
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE--------------
Confidence 66888899999999999999999999875 589999999999999999999999999998642211
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEEecCC------
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIRRGRLIRRLVGVD------ 2162 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLrTGklIrsL~gh~------ 2162 (2342)
..+....+|.+.+.+++|+|||++++ ++..++++.+||..++.++..+..+.
T Consensus 99 ---------------------~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~ 157 (426)
T d1hzua2 99 ---------------------AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ 157 (426)
T ss_dssp ---------------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSC
T ss_pred ---------------------EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccce
Confidence 01222345777778888999999874 55689999999999999988876542
Q ss_pred -------cEEEEEecCCcEEEEEeCC-CeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccc
Q 000085 2163 -------AHAVSLSSEGVIMTWNKLQ-HTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2163 -------vssLSfSpDG~IlVwdssd-GsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~ 2233 (2342)
...+++++++..+++...+ +.+.++... +..+.....++...+..+.|+|+|++++++...... ..
T Consensus 158 ~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~-----~~ 232 (426)
T d1hzua2 158 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNK-----VA 232 (426)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSE-----EE
T ss_pred eecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccc-----ee
Confidence 2567888888877776543 556555543 222233334478889999999999999988643321 11
Q ss_pred ccccCCCCC-------------CccccccccccccCCCCccCCCCeEEEEECCC-------CeEEEEEecCCCCCeEEEE
Q 000085 2234 IQGLNSKQS-------------GTEDFDLASDQSVDNNRFDFPSPSICFLDLHT-------LKVFHVLKLGEGQDITALA 2293 (2342)
Q Consensus 2234 Lw~l~~~~~-------------~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T-------gk~L~tL~lgHs~~ItsLa 2293 (2342)
+++...... ....+..... ..........|+.+.+|+... ++...++. +|...+..++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~-g~~~~v~~v~ 310 (426)
T d1hzua2 233 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKY-GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIK 310 (426)
T ss_dssp EEETTTTEEEEEEECSSCCCCSCCEEEEETTT-EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE-CSSSCCCCEE
T ss_pred eeecccccEEEEeccCCcccccceeeeecCCC-CceEEeccCCCceEEEeeccccccccccceEeEEEe-cCCCceeEEE
Confidence 121111110 0000000000 000011123588899988754 47888888 8999999999
Q ss_pred EecCCCEEEE-------EeCCCcEEEEeCCCCC
Q 000085 2294 LNKDNTNLLV-------STADKQLIVFTDPALS 2319 (2342)
Q Consensus 2294 fSPDG~~LaS-------GSsDGsIrVWDi~sLs 2319 (2342)
|+||+++|++ ++.|++|+|||..+++
T Consensus 311 ~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~ 343 (426)
T d1hzua2 311 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 343 (426)
T ss_dssp CCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred cCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence 9999999995 5568999999987664
|
| >d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: PreBEACH PH-like domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.9e-18 Score=176.31 Aligned_cols=101 Identities=28% Similarity=0.541 Sum_probs=86.9
Q ss_pred eEEEEeeeeEeeeeeeeEEEEEEEeeEEEEEeCCCCCCCCCC---ccccccccceEeeccceeEEeeccccCcccEEEEE
Q 000085 1474 RIVFELPSSMVRPLRVIRGTFQVTTRRINFIVDNTESPEEGT---SELRNQEKDRSWLMSSLHQIYSRRYLLRRSALELF 1550 (2342)
Q Consensus 1474 kVils~~c~mVtPl~v~~G~L~IT~~~LyF~vd~~~~~~~~~---~~~~~~~k~~~~~~~~I~~i~~Rr~~l~~~alEif 1550 (2342)
+|+++++|+||+|+.+.+|+|.||+++|||+.|+..+..... .......++++|++++|++||+|||+||++|||||
T Consensus 2 pv~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif 81 (110)
T d1t77a2 2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIF 81 (110)
T ss_dssp CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEE
Confidence 578999999999999999999999999999998754433211 11223457889999999999999999999999999
Q ss_pred EeCCceEEEEcCChhhHHHHHHHH
Q 000085 1551 MVDRSNFFFDFGSTEGRRNAYRAI 1574 (2342)
Q Consensus 1551 ~~~~~s~f~~F~~~~~~~~~~~~i 1574 (2342)
+.||++|||+|.+++.++++++.+
T Consensus 82 ~~~~~s~~~~F~~~~~~~~v~~~l 105 (110)
T d1t77a2 82 MANRVAVMFNFPDPATVKKVVNFL 105 (110)
T ss_dssp ETTSCEEEEECSSHHHHHHHHHHS
T ss_pred EcCCcEEEEEeCCHHHHHHHHHhc
Confidence 999999999999999999988765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.65 E-value=1.5e-14 Score=171.26 Aligned_cols=297 Identities=10% Similarity=0.023 Sum_probs=192.4
Q ss_pred EEEEEcCCCCEEEEE-----EcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEE
Q 000085 2000 AVVSITHDKEIITGG-----HVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILL 2064 (2342)
Q Consensus 2000 t~VafSpDGklLASG-----S~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrV 2064 (2342)
..++++|||+.++.. +.++.|.+||..+++.+.++.+|..+ .++|+|||++|++++ .+++|.+
T Consensus 24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v 101 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence 347899999977654 23467999999999999998877654 799999999998875 4688999
Q ss_pred EeccCCccccccccCC------CCCCccccccCCCCCceeecCCCc---cccccCCceEEecCCCCCeEEEEEecCCCEE
Q 000085 2065 WRIHRAFTSRTGTIEP------SSGMGTPGNSIGSSTPANASADKS---RRRRIEGPIHVLRGHHREILCCCVSSDLGVV 2135 (2342)
Q Consensus 2065 WDl~tg~~i~t~~~~~------~~~V~svs~SpDG~~Las~s~D~s---~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL 2135 (2342)
||..+++......... ......+.++++++.+.....+.. ..+.... .....|.....++.|+++++.+
T Consensus 102 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~g~~~ 179 (373)
T d2madh_ 102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG--SSDDQLLSSPTCYHIHPGAPST 179 (373)
T ss_pred EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC--CeEEEEeccceeEEEecCCCcE
Confidence 9999987654431111 122345678888887766554321 2222221 2223455567789999998754
Q ss_pred -EEEeCCCcEEEEECCCCeEEEEEecCC--------cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeec--CCCCC-
Q 000085 2136 -VSCSDSSDLLLHSIRRGRLIRRLVGVD--------AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAK--LPLSG- 2203 (2342)
Q Consensus 2136 -aSGS~DGtIrIWDLrTGklIrsL~gh~--------vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~--~~Hs~- 2203 (2342)
++.+.||++.+||..++........+. ...+.+++++. +++...++.+.+|+..+..+.... ..+..
T Consensus 180 ~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 258 (373)
T d2madh_ 180 FYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCc
Confidence 688999999999999888776654321 12333444443 344445566666665432211110 01222
Q ss_pred ---------CeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCC
Q 000085 2204 ---------SIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHT 2274 (2342)
Q Consensus 2204 ---------~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~T 2274 (2342)
....+++++++..++.....+. .......++.+.+||..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------------------------------~~~~~~~~~~v~~~d~~t 307 (373)
T d2madh_ 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQS-------------------------------AWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred EEeeeeccCcceeeEEecCCCeEEEecCCCc-------------------------------eEEeecCCCeEEEEECCC
Confidence 2334455555555543321111 000112367899999999
Q ss_pred CeEEEEEecCCCCCeEEEEEecCCCE--EEEEeCCCcEEEEeCCCCChhhhhhhhhccccCCCc
Q 000085 2275 LKVFHVLKLGEGQDITALALNKDNTN--LLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2275 gk~L~tL~lgHs~~ItsLafSPDG~~--LaSGSsDGsIrVWDi~sLs~k~LdQLLk~GWegDGL 2336 (2342)
++.+..+. +...+.+++|+|||+. +++++.|+.|+|||..+.+ .+..+-..|+.+.+|
T Consensus 308 ~~~~~~~~--~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~--~~~~~~~~g~~P~~l 367 (373)
T d2madh_ 308 GQTSSQIS--LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD--QDQSTVELGSGPQVL 367 (373)
T ss_pred CcEEEEec--CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC--EEEEECCCCCCCcEE
Confidence 99998877 5667999999999985 4578999999999987764 444444566666655
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=1.1e-14 Score=180.21 Aligned_cols=179 Identities=7% Similarity=-0.062 Sum_probs=140.9
Q ss_pred EEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
++++.+.||+|.|||..+++++..+..|. .|..++|||||+++++++.|++|++||+.++.....
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~-------------- 98 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-------------- 98 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--------------
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE--------------
Confidence 56888899999999999999999998874 699999999999999999999999999987532111
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCC------
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVGVD------ 2162 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~gh~------ 2162 (2342)
..+....+|.+.+.+..|+|||+++ ++++.+++|++||..+++++..+..+.
T Consensus 99 ---------------------~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~ 157 (432)
T d1qksa2 99 ---------------------AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 157 (432)
T ss_dssp ---------------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred ---------------------EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccce
Confidence 1122234566667777889999976 788899999999999999998886532
Q ss_pred -------cEEEEEecCCcEEEEEe-CCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2163 -------AHAVSLSSEGVIMTWNK-LQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2163 -------vssLSfSpDG~IlVwds-sdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
...+.++++|..+++.. .++.+.+++... .........+...+.+++|+|||+++++++.++
T Consensus 158 ~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~ 228 (432)
T d1qksa2 158 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR 228 (432)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred eccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecccc
Confidence 34678999998877764 458888888753 333333334667889999999999999887543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=4.2e-14 Score=162.69 Aligned_cols=270 Identities=16% Similarity=0.093 Sum_probs=182.3
Q ss_pred eEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCcccceecccC
Q 000085 1959 ASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLETASGH 2037 (2342)
Q Consensus 1959 ~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~tL~GH 2037 (2342)
++++++.|+.|++|+..++.. ...+..+..+ ..+..++|+|||+++ ++++.++.|.+||+.+++.+..+..+
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~------~~~i~~~~~~-~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~ 75 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAV------DKVITIADAG-PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEE------EEEEECTTCT-TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEEcCCCEEEEEECCCCeE------EEEEECCCCC-CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence 577888899999999876321 1222222211 223459999999976 67788999999999999998877665
Q ss_pred C-----CCeEEEEecCCCCEEEEEe------------CCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeec
Q 000085 2038 C-----APVTCLALSSDSNFLVTGS------------QDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANAS 2100 (2342)
Q Consensus 2038 t-----~~VtcLAfSPDG~~LaSGS------------~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s 2100 (2342)
. ..+..++|+||++++++++ .+..+.+||..++...... .....+..+.++++|..++++.
T Consensus 76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF--EAPRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE--ECCSSCCCEEECTTSSCEEEES
T ss_pred CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec--cccCCceEEEEcCCCCEEEEEc
Confidence 4 3456799999999998876 4678889999887654443 2344567889999999998776
Q ss_pred CCCcccccc--CCceEEecCCCCC-----------------------eEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE
Q 000085 2101 ADKSRRRRI--EGPIHVLRGHHRE-----------------------ILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI 2155 (2342)
Q Consensus 2101 ~D~s~~~~i--~~~l~~L~GHs~~-----------------------Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI 2155 (2342)
.+.. .|+. ......+..+... +.......+......++.++.+.+||..++...
T Consensus 154 ~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (337)
T d1pbyb_ 154 RDLH-VMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp SSEE-EEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred CCcc-eeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence 5432 2222 2222222211110 011111122222233444567999999998865
Q ss_pred EEE-ecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCce-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCc
Q 000085 2156 RRL-VGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVL-VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSY 2231 (2342)
Q Consensus 2156 rsL-~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~-L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~ 2231 (2342)
... ..+ ....+++++++.++... ++.+.+|++.... +... .+...+.+++|+|||++|++|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~s~dG~~l~v~~~--------- 299 (337)
T d1pbyb_ 233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV--PLPHSYYSVNVSTDGSTVWLGGA--------- 299 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE--ECSSCCCEEEECTTSCEEEEESB---------
T ss_pred EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE--cCCCCEEEEEECCCCCEEEEEeC---------
Confidence 543 222 35677888998877654 4789999997443 4433 26678899999999999998852
Q ss_pred ccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2232 DNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2232 d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
|++|+|||..+++.+.++..
T Consensus 300 --------------------------------~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 300 --------------------------------LGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp --------------------------------SSEEEEEETTTCCEEEEEEC
T ss_pred --------------------------------CCcEEEEECCCCcEEEEEEC
Confidence 67899999999999998874
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.5e-13 Score=158.83 Aligned_cols=267 Identities=10% Similarity=0.062 Sum_probs=178.2
Q ss_pred EEEEEEcCCcEEEEecCCcccceec--ccCCCCeEEEEecCCCCEEEEE-eCCCceEEEeccCCcccccc--ccCCCCCC
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETA--SGHCAPVTCLALSSDSNFLVTG-SQDTTILLWRIHRAFTSRTG--TIEPSSGM 2084 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL--~GHt~~VtcLAfSPDG~~LaSG-S~DGTVrVWDl~tg~~i~t~--~~~~~~~V 2084 (2342)
++++++.|++|+||++++...+..+ ..|.+.|.+|+|+|||++|+++ +.|++|++|++.......+. .......+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 4678889999999999765433322 3588999999999999999655 45899999999875443332 22344456
Q ss_pred ccccccCCCCCceeecCCCc--cccccC----CceEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeEEEE
Q 000085 2085 GTPGNSIGSSTPANASADKS--RRRRIE----GPIHVLRGHHREILCCCVSSDLGVVVSCSD-SSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2085 ~svs~SpDG~~Las~s~D~s--~~~~i~----~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~-DGtIrIWDLrTGklIrs 2157 (2342)
..++++|||+.+++...+.. ..+... ........|...+.++.++|+++++++++. +..|.+|+..+......
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 67899999999887765432 222221 123334567778899999999998887774 56799999876543222
Q ss_pred Ee--------cCCcEEEEEecCCcEEEEEe-CCCeEEEEEeCCc--eee---ee-----cCCCCCCeEEEEEccCCCEEE
Q 000085 2158 LV--------GVDAHAVSLSSEGVIMTWNK-LQHTLSSFTLNGV--LVA---RA-----KLPLSGSIGCMEISLDGHSAL 2218 (2342)
Q Consensus 2158 L~--------gh~vssLSfSpDG~IlVwds-sdGsI~I~dlnG~--~L~---s~-----~~~Hs~~ItsLafSPDGk~La 2218 (2342)
.. +.....+++++++...++.. ..+...++..... .+. .. ..........+++++|+++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 11 12357899999998877654 4456666665321 110 00 011345677889999999888
Q ss_pred EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEe--cCCCCCeEEEEEec
Q 000085 2219 IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLK--LGEGQDITALALNK 2296 (2342)
Q Consensus 2219 SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~--lgHs~~ItsLafSP 2296 (2342)
.... .++.+.+|++.......... ..+...+.+++|+|
T Consensus 246 ~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp 285 (333)
T d1ri6a_ 246 ACDR----------------------------------------TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH 285 (333)
T ss_dssp EEET----------------------------------------TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT
T ss_pred eecc----------------------------------------cCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC
Confidence 6641 14567888775432221111 13456688999999
Q ss_pred CCCEEEEEe-CCCcEEEEeCC
Q 000085 2297 DNTNLLVST-ADKQLIVFTDP 2316 (2342)
Q Consensus 2297 DG~~LaSGS-sDGsIrVWDi~ 2316 (2342)
||++|++++ .++.|.+|+++
T Consensus 286 DGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 286 SGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp TSSEEEEECTTTCEEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEEE
Confidence 999988775 46899999753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.54 E-value=1.7e-13 Score=158.11 Aligned_cols=276 Identities=11% Similarity=0.032 Sum_probs=176.4
Q ss_pred cCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEE-EEEEcCCcEEEEecCCccccee
Q 000085 1955 QHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEII-TGGHVDGSIKLLTSDGAKTLET 2033 (2342)
Q Consensus 1955 ~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklL-ASGS~DGsIrVWDl~tgkll~t 2033 (2342)
++++++++++.++.|.+|+..++... ..+... +-.....++|+|||+++ +++..++.|++||+.+++.+..
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~~------~t~~~~--~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTVY------KSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEE------EEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCCEE------EEEEcC--CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence 56788999999999999998763211 122211 11223469999999965 6667899999999999988766
Q ss_pred cccC------CCCeEEEEecCCCCEEEEEe------------CCCceEEEeccCCcccccc-ccCCCCCCccccccCCCC
Q 000085 2034 ASGH------CAPVTCLALSSDSNFLVTGS------------QDTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSS 2094 (2342)
Q Consensus 2034 L~GH------t~~VtcLAfSPDG~~LaSGS------------~DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~ 2094 (2342)
+... ...+..++|+|||++++.++ .++.+.+|+..++...... ....+..+..+..++++.
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 5432 23467899999999988765 4778999999887654443 222334455555666665
Q ss_pred CceeecCCCccccccCCceEEecCCCCCeEEEEEec--------------------------CCCEEEEEeCCCcEEEEE
Q 000085 2095 TPANASADKSRRRRIEGPIHVLRGHHREILCCCVSS--------------------------DLGVVVSCSDSSDLLLHS 2148 (2342)
Q Consensus 2095 ~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSP--------------------------Dg~lLaSGS~DGtIrIWD 2148 (2342)
.++...............+..+..+. ....+.++| ....++++..++.+.+||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 158 LYVAGPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp EEEESSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEEeCCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 54433211111111122233332221 111222222 233345556667888999
Q ss_pred CCCCeEEEEE-ecCC--cEEEEEecCCcEEEEEeCCCeEEEEEeCC-ceeeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000085 2149 IRRGRLIRRL-VGVD--AHAVSLSSEGVIMTWNKLQHTLSSFTLNG-VLVARAKLPLSGSIGCMEISLDGHSALIGVNSS 2224 (2342)
Q Consensus 2149 LrTGklIrsL-~gh~--vssLSfSpDG~IlVwdssdGsI~I~dlnG-~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DG 2224 (2342)
+.++...... ..+. ...+.+++++..++... .+.+.+|+... +.+.... +...+.+++|+|||+++++|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~--~~~~~~~va~s~DG~~l~v~~~-- 311 (346)
T d1jmxb_ 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGT-- 311 (346)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESB--
T ss_pred CCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc--CCCCEEEEEEcCCCCEEEEEeC--
Confidence 9888765543 3332 55677777776665543 46789999864 4444333 4567999999999999998852
Q ss_pred CCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec
Q 000085 2225 STNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL 2283 (2342)
Q Consensus 2225 s~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l 2283 (2342)
|+.|+|||+.+++.+.++..
T Consensus 312 ---------------------------------------d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 312 ---------------------------------------FNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp ---------------------------------------SSEEEEEETTTTEEEEEEEC
T ss_pred ---------------------------------------CCcEEEEECccCCEEEEEEC
Confidence 67899999999999999883
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.51 E-value=4.2e-12 Score=143.94 Aligned_cols=241 Identities=15% Similarity=0.125 Sum_probs=179.3
Q ss_pred EEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEE-EEEeCCCceEEEeccCCccccccccCCCCCCccccc
Q 000085 2011 ITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFL-VTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGN 2089 (2342)
Q Consensus 2011 LASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~L-aSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~ 2089 (2342)
.++++.|++|.|||+.+++.++++... +.+..++|+|||++| ++++.+++|.+||+.++..
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~----------------- 66 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV----------------- 66 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-----------------
Confidence 456778999999999999999888754 457899999999987 5777899999999988532
Q ss_pred cCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCC-cEEEE
Q 000085 2090 SIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIRRGRLIRRLVGVD-AHAVS 2167 (2342)
Q Consensus 2090 SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLrTGklIrsL~gh~-vssLS 2167 (2342)
+..+..|. .+..++|++++..+ +++..++.+.+|+..+++....+..+. ...++
T Consensus 67 -----------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (301)
T d1l0qa2 67 -----------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLA 122 (301)
T ss_dssp -----------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred -----------------------eeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccccccceEEE
Confidence 23344443 46789999998865 456678899999999999999888754 67899
Q ss_pred EecCCcEEEEE-eCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccc
Q 000085 2168 LSSEGVIMTWN-KLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTED 2246 (2342)
Q Consensus 2168 fSpDG~IlVwd-ssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ia 2246 (2342)
+++||..++.. ..++.+.+|+.......... .+...+.++.+++++.++++++.+
T Consensus 123 ~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 178 (301)
T d1l0qa2 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-SVGRSPKGIAVTPDGTKVYVANFD----------------------- 178 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSSEEEEEETT-----------------------
T ss_pred eecCCCeeeeeeccccceeeeeccccceeeec-ccCCCceEEEeeccccceeeeccc-----------------------
Confidence 99999876544 55677888887644333222 255678999999999999887521
Q ss_pred cccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCChhh-
Q 000085 2247 FDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTA---DKQLIVFTDPALSLKV- 2322 (2342)
Q Consensus 2247 Fspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSs---DGsIrVWDi~sLs~k~- 2322 (2342)
++.+.+|+....+....+. +...+..++|++++..+++++. ++.|.+||..+.+...
T Consensus 179 -----------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~ 239 (301)
T d1l0qa2 179 -----------------SMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR 239 (301)
T ss_dssp -----------------TTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred -----------------ccccccccccceeeeeccc--ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEE
Confidence 3567888888888777766 4456789999999998876643 4689999976553110
Q ss_pred h---hhhhhccccCCCc
Q 000085 2323 V---DQMLKLGWEGDGL 2336 (2342)
Q Consensus 2323 L---dQLLk~GWegDGL 2336 (2342)
+ .......|.+||-
T Consensus 240 ~~~~~~~~~va~spdg~ 256 (301)
T d1l0qa2 240 IPVGPDPAGIAVTPDGK 256 (301)
T ss_dssp EECCSSEEEEEECTTSS
T ss_pred EcCCCCEEEEEEeCCCC
Confidence 0 1222345777774
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.2e-11 Score=142.49 Aligned_cols=255 Identities=8% Similarity=0.059 Sum_probs=162.9
Q ss_pred EEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEE-EEEcCCcEEEEecCCcccceecc---
Q 000085 1960 SASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIIT-GGHVDGSIKLLTSDGAKTLETAS--- 2035 (2342)
Q Consensus 1960 LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLA-SGS~DGsIrVWDl~tgkll~tL~--- 2035 (2342)
.++++.|++|++|+...... ....+.+ -+.+.+ ..++|+|||++|+ ++..|+.|++|++........+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~---l~~~~~~-~~~~~v---~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~ 79 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGA---LTLTQVV-DVPGQV---QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 79 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSC---EEEEEEE-ECSSCC---CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEECCCCCcEEEEEEcCCCC---eEEEEEE-cCCCCE---eEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence 36677888999998643111 1111111 123333 4499999999875 45568999999998765443332
Q ss_pred cCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCcccccc-ccCCCCCCccccccCCCCCceeecCCCc--cccccCC
Q 000085 2036 GHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTG-TIEPSSGMGTPGNSIGSSTPANASADKS--RRRRIEG 2111 (2342)
Q Consensus 2036 GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s--~~~~i~~ 2111 (2342)
.+...+.+++|+|||++|++++. +++|.+|+.......... ...+...+..+.++++++.+........ ..++...
T Consensus 80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159 (333)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence 24456788999999999999885 678999998875443333 3345566778899999998766654432 2222211
Q ss_pred --c------eEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC----eEEEEEec--------CCcEEEEEec
Q 000085 2112 --P------IHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRG----RLIRRLVG--------VDAHAVSLSS 2170 (2342)
Q Consensus 2112 --~------l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTG----klIrsL~g--------h~vssLSfSp 2170 (2342)
. ......+......++|++++..++... ..+...+|+.... .....+.. .....+++++
T Consensus 160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 239 (333)
T d1ri6a_ 160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 239 (333)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec
Confidence 1 111223445678999999988876554 5667888886532 22233321 1245678999
Q ss_pred CCcEEEEE-eCCCeEEEEEeCC--ceeee-ecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2171 EGVIMTWN-KLQHTLSSFTLNG--VLVAR-AKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2171 DG~IlVwd-ssdGsI~I~dlnG--~~L~s-~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
||+.++.. ...+.+.+|.+.. ..... ....+...+.+++|+|||++|++++
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~ 294 (333)
T d1ri6a_ 240 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG 294 (333)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred ccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence 99876554 4557888888752 22211 1122456788999999999988774
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=1.3e-12 Score=152.75 Aligned_cols=279 Identities=9% Similarity=0.028 Sum_probs=168.4
Q ss_pred EEcCCCCEEEEEE-----cCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEE----------eCCCceEEEec
Q 000085 2003 SITHDKEIITGGH-----VDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTG----------SQDTTILLWRI 2067 (2342)
Q Consensus 2003 afSpDGklLASGS-----~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSG----------S~DGTVrVWDl 2067 (2342)
+.+|||+.++... .++.|.+||..+++.+.++..+..+ .++|||||++|+.. +.|+.|++||.
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 4589999776643 4567999999999999988776554 79999999988754 45889999999
Q ss_pred cCCcccccccc------CCCCCCccccccCCCCCceeecCCC---cccccc--CCceEEecCCCC-------CeEEEEEe
Q 000085 2068 HRAFTSRTGTI------EPSSGMGTPGNSIGSSTPANASADK---SRRRRI--EGPIHVLRGHHR-------EILCCCVS 2129 (2342)
Q Consensus 2068 ~tg~~i~t~~~------~~~~~V~svs~SpDG~~Las~s~D~---s~~~~i--~~~l~~L~GHs~-------~Vt~VafS 2129 (2342)
.++........ ........+.+++++..+....... ...++. ...+..+..+.. ....+.++
T Consensus 86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
T d2bbkh_ 86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC 165 (355)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEc
Confidence 99776554311 1123345678899998876654332 122322 223333333321 12233444
Q ss_pred cCCCEEEEE-eCCCcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecC--C------
Q 000085 2130 SDLGVVVSC-SDSSDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKL--P------ 2200 (2342)
Q Consensus 2130 PDg~lLaSG-S~DGtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~--~------ 2200 (2342)
+++..++.. ..++.+.+++..+..... ........+++++..+++...++.+++|++.+..+..... .
T Consensus 166 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (355)
T d2bbkh_ 166 RDGSLAKVAFGTEGTPEITHTEVFHPED---EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER 242 (355)
T ss_dssp TTSCEEEEECCSSSCCEEEECCCCSCTT---SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred CCCCEEEEEecCCCeEEEEeccccccee---cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceE
Confidence 444433322 222333333332221100 0012334566666666777777777777765432211110 0
Q ss_pred ----CCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCe
Q 000085 2201 ----LSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLK 2276 (2342)
Q Consensus 2201 ----Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk 2276 (2342)
.......+++++++..++....++... ........|.+||..+++
T Consensus 243 ~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~-------------------------------~~~~~~~~v~v~d~~t~~ 291 (355)
T d2bbkh_ 243 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEW-------------------------------RHKTASRFVVVLDAKTGE 291 (355)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTT-------------------------------CTTSCEEEEEEEETTTCC
T ss_pred eeeeeccceEEEEEeCCCCeEEEEeccCCce-------------------------------eecCCCCeEEEEeCCCCc
Confidence 112334578888888887665332210 001124679999999999
Q ss_pred EEEEEecCCCCCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCC
Q 000085 2277 VFHVLKLGEGQDITALALNKDNT--NLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2277 ~L~tL~lgHs~~ItsLafSPDG~--~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.+..+. +...+.+++|+|||+ .+++++.|+.|+|||..+.+
T Consensus 292 ~~~~~~--~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 292 RLAKFE--MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp EEEEEE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEec--CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 998887 345689999999997 34567789999999977663
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.43 E-value=1.4e-12 Score=152.60 Aligned_cols=279 Identities=10% Similarity=-0.009 Sum_probs=181.4
Q ss_pred CCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEE----------EcCCcEEEEecCCcccceec
Q 000085 1965 SGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGG----------HVDGSIKLLTSDGAKTLETA 2034 (2342)
Q Consensus 1965 sD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASG----------S~DGsIrVWDl~tgkll~tL 2034 (2342)
....+.+|+..++... ..+. .+. ...++|||||++|++. ..|+.|++||..+++.+..+
T Consensus 26 ~~~~v~v~D~~tg~~~------~~~~--~g~---~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~ 94 (355)
T d2bbkh_ 26 AVTQQFVIDGEAGRVI------GMID--GGF---LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI 94 (355)
T ss_dssp SSEEEEEEETTTTEEE------EEEE--ECS---SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE
T ss_pred CcCeEEEEECCCCcEE------EEEE--CCC---CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEE
Confidence 4567889987663211 1111 111 2248999999977653 45889999999999888776
Q ss_pred ccCCC-------CeEEEEecCCCCEEEEEe--CCCceEEEeccCCccccccccC------CCCCCccccccCCCCCceee
Q 000085 2035 SGHCA-------PVTCLALSSDSNFLVTGS--QDTTILLWRIHRAFTSRTGTIE------PSSGMGTPGNSIGSSTPANA 2099 (2342)
Q Consensus 2035 ~GHt~-------~VtcLAfSPDG~~LaSGS--~DGTVrVWDl~tg~~i~t~~~~------~~~~V~svs~SpDG~~Las~ 2099 (2342)
..|.. ....++|++++++++.++ .+..+.+|+..++......... .......+.+++|+..+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~ 174 (355)
T d2bbkh_ 95 ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVA 174 (355)
T ss_dssp EETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEE
Confidence 54332 235679999999887765 4678999999987655443111 11233445677777776554
Q ss_pred cCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEE--EEEecC------------CcEE
Q 000085 2100 SADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLI--RRLVGV------------DAHA 2165 (2342)
Q Consensus 2100 s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklI--rsL~gh------------~vss 2165 (2342)
..+......... ......+...+.+..+.+++..++.++.++.+++|++..+... .....+ ....
T Consensus 175 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 253 (355)
T d2bbkh_ 175 FGTEGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253 (355)
T ss_dssp CCSSSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred ecCCCeEEEEec-ccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEE
Confidence 433221100000 0011234455667788888999999999999999999887542 222221 2356
Q ss_pred EEEecCCcEEEEEeCC----------CeEEEEEeC-CceeeeecCCCCCCeEEEEEccCCCE-EEEEeCCCCCCCCCccc
Q 000085 2166 VSLSSEGVIMTWNKLQ----------HTLSSFTLN-GVLVARAKLPLSGSIGCMEISLDGHS-ALIGVNSSSTNNGSYDN 2233 (2342)
Q Consensus 2166 LSfSpDG~IlVwdssd----------GsI~I~dln-G~~L~s~~~~Hs~~ItsLafSPDGk~-LaSGS~DGs~d~~i~d~ 2233 (2342)
++++++|..+++...+ ..+.+|+.. ++.+.... +...+.+++|+|||+. +++.+ .
T Consensus 254 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~l~v~~--~--------- 320 (355)
T d2bbkh_ 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINVSQDEKPLLYALS--T--------- 320 (355)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECCSSSCEEEEEE--T---------
T ss_pred EEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec--CCCCEEEEEEcCCCCeEEEEEE--C---------
Confidence 8999999988776433 358888876 44444332 4466899999999984 33332 0
Q ss_pred ccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCC
Q 000085 2234 IQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDN 2298 (2342)
Q Consensus 2234 Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG 2298 (2342)
.|+.|+|||+.+++.+.++. +++.....+.+.++|
T Consensus 321 -----------------------------~d~~i~v~D~~tg~~~~~i~-~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 321 -----------------------------GDKTLYIHDAESGEELRSVN-QLGHGPQVITTADMG 355 (355)
T ss_dssp -----------------------------TTTEEEEEETTTCCEEEEEC-CCCSSCCEEECCCCC
T ss_pred -----------------------------CCCEEEEEECCCCCEEEEEe-CcCCCccEEEeCCCC
Confidence 26889999999999999998 666666666655543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.26 E-value=1.2e-09 Score=128.50 Aligned_cols=247 Identities=10% Similarity=-0.026 Sum_probs=161.8
Q ss_pred EEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccCCCCe-------EEEEecCCCCEEEEEe--CCCc
Q 000085 2001 VVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGHCAPV-------TCLALSSDSNFLVTGS--QDTT 2061 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GHt~~V-------tcLAfSPDG~~LaSGS--~DGT 2061 (2342)
.++|+|||++|++++ .++.|+|||..+++.+..+..|.... ..+.|+++++.++... .++.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 489999999888764 46789999999999988877766544 4478888888766554 4678
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCc-eeecCCCc-cccccC--CceEEec------CCCCCeEEEEEecC
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTP-ANASADKS-RRRRIE--GPIHVLR------GHHREILCCCVSSD 2131 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~L-as~s~D~s-~~~~i~--~~l~~L~------GHs~~Vt~VafSPD 2131 (2342)
+.+|+......... ......+.++++|..+ ++...++. ..|+.. ....... ++......+.++++
T Consensus 150 ~~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T d2madh_ 150 VGLVVQGGSSDDQL-----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred eEEeeccCCeEEEE-----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC
Confidence 88999877543322 2234566778888765 33444433 233332 1222221 12222334455555
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEE--Eec------------CCcEEEEEecCCcEEEEE----------eCCCeEEEE
Q 000085 2132 LGVVVSCSDSSDLLLHSIRRGRLIRR--LVG------------VDAHAVSLSSEGVIMTWN----------KLQHTLSSF 2187 (2342)
Q Consensus 2132 g~lLaSGS~DGtIrIWDLrTGklIrs--L~g------------h~vssLSfSpDG~IlVwd----------ssdGsI~I~ 2187 (2342)
+ .++..+.++.+.+|+..++..... +.. .....++++++|..+++. ...+.+.+|
T Consensus 225 ~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 303 (373)
T d2madh_ 225 G-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred c-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence 5 455667889999999887754322 111 113456777777655443 344567888
Q ss_pred EeC-CceeeeecCCCCCCeEEEEEccCCCEEE--EEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCC
Q 000085 2188 TLN-GVLVARAKLPLSGSIGCMEISLDGHSAL--IGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPS 2264 (2342)
Q Consensus 2188 dln-G~~L~s~~~~Hs~~ItsLafSPDGk~La--SGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~D 2264 (2342)
+.. ++.+... .+...+.+++|+|||+.++ +++ .|
T Consensus 304 d~~t~~~~~~~--~~~~~~~~~a~spDG~~~l~vt~~-----------------------------------------~d 340 (373)
T d2madh_ 304 TGLVGQTSSQI--SLGHDVDAISVAQDGGPDLYALSA-----------------------------------------GT 340 (373)
T ss_pred ECCCCcEEEEe--cCCCCeeEEEECCCCCEEEEEEeC-----------------------------------------CC
Confidence 875 4444433 3667899999999999643 332 27
Q ss_pred CeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2265 PSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2265 GsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
+.|+|||+.+++.+.++. .++...+.|++.++
T Consensus 341 ~~v~v~D~~tg~~~~~~~-~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 341 EVLHIYDAGAGDQDQSTV-ELGSGPQVLSVMNE 372 (373)
T ss_pred CeEEEEECCCCCEEEEEC-CCCCCCcEEEEecC
Confidence 889999999999999998 77777888877654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.19 E-value=3.7e-11 Score=143.28 Aligned_cols=290 Identities=8% Similarity=-0.054 Sum_probs=171.6
Q ss_pred EEcCCCCE--EE-EEEcCCc--EEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEe----------CCCceEEEec
Q 000085 2003 SITHDKEI--IT-GGHVDGS--IKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGS----------QDTTILLWRI 2067 (2342)
Q Consensus 2003 afSpDGkl--LA-SGS~DGs--IrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS----------~DGTVrVWDl 2067 (2342)
+..++++. ++ ....+++ +.+||..+++.+.++.+|... .++|+|||++|+..+ .|++|.+||.
T Consensus 26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~ 103 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence 44667763 22 2334444 667799999999988877765 589999999888754 4788999999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCS-DSSDLLL 2146 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS-~DGtIrI 2146 (2342)
.+++....... |.+.. .........++|+|||++++.+. .++.+.+
T Consensus 104 ~t~~~~~~i~~------------p~~~~---------------------~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~ 150 (368)
T d1mdah_ 104 VTFLPIADIEL------------PDAPR---------------------FSVGPRVHIIGNCASSACLLFFLFGSSAAAG 150 (368)
T ss_dssp TTCCEEEEEEE------------TTSCS---------------------CCBSCCTTSEEECTTSSCEEEEECSSSCEEE
T ss_pred CCCcEeeeecC------------Cccce---------------------ecccCCccceEECCCCCEEEEEeCCCCeEEE
Confidence 88654322200 00000 00111223588999999988775 5799999
Q ss_pred EECCCCeEEEEEecCC---------cEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEE
Q 000085 2147 HSIRRGRLIRRLVGVD---------AHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSA 2217 (2342)
Q Consensus 2147 WDLrTGklIrsL~gh~---------vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~L 2217 (2342)
||+.+++.+..+..+. ...+++++||.+.++...++....+.... .....+...+..+.+.+++..+
T Consensus 151 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~ 226 (368)
T d1mdah_ 151 LSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp EEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC----CSCTTSCBCSCCEEETTTTEEE
T ss_pred EECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeec----ccccccccceeecccccCcEEE
Confidence 9999999998886543 35567788888888776655433332211 1111244555566777776665
Q ss_pred EEEeCCCCCCCC--CcccccccCCCC-------------CCccccccccccc-----cCCCCccCCCCeEEEEECCCCeE
Q 000085 2218 LIGVNSSSTNNG--SYDNIQGLNSKQ-------------SGTEDFDLASDQS-----VDNNRFDFPSPSICFLDLHTLKV 2277 (2342)
Q Consensus 2218 aSGS~DGs~d~~--i~d~Lw~l~~~~-------------~~~iaFspd~~~s-----~ss~~ias~DGsIrIWDL~Tgk~ 2277 (2342)
.+.+.......+ ....++...... .....++++.... ............|.+||..+++.
T Consensus 227 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~ 306 (368)
T d1mdah_ 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306 (368)
T ss_dssp ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE
Confidence 533210000000 000001100000 0111122211100 00001112245799999999999
Q ss_pred EEEEecCCCCCeEEEEEecCCCE--EEEEeCCCcEEEEeCCCCChhhhhhhhhccccCCCc
Q 000085 2278 FHVLKLGEGQDITALALNKDNTN--LLVSTADKQLIVFTDPALSLKVVDQMLKLGWEGDGL 2336 (2342)
Q Consensus 2278 L~tL~lgHs~~ItsLafSPDG~~--LaSGSsDGsIrVWDi~sLs~k~LdQLLk~GWegDGL 2336 (2342)
+..+. +...+.+++|+|||+. ++++..|+.|+|||..+. .....+..|..+.+|
T Consensus 307 ~~~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg---k~~~~i~~g~~P~~l 362 (368)
T d1mdah_ 307 SGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD---QDQSSVELDKGPESL 362 (368)
T ss_dssp EECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC---EEEEECCCCSCCCEE
T ss_pred eEEec--CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC---CEEEEEECCCCCCEE
Confidence 88877 4457899999999973 356678999999996655 334456677777766
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.99 E-value=2e-09 Score=128.08 Aligned_cols=239 Identities=11% Similarity=-0.003 Sum_probs=154.2
Q ss_pred EEEEcCCCCEEEEEE----------cCCcEEEEecCCcccceecccCCCC-------eEEEEecCCCCEEEEEe-CCCce
Q 000085 2001 VVSITHDKEIITGGH----------VDGSIKLLTSDGAKTLETASGHCAP-------VTCLALSSDSNFLVTGS-QDTTI 2062 (2342)
Q Consensus 2001 ~VafSpDGklLASGS----------~DGsIrVWDl~tgkll~tL~GHt~~-------VtcLAfSPDG~~LaSGS-~DGTV 2062 (2342)
.++|+|||+.|++.+ .|+.|++||..+++.+..+..|... ...++|+|||++|+.++ .++++
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 378999999877654 4778999999999988877654322 34689999999998776 57999
Q ss_pred EEEeccCCccccccccCC------CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE
Q 000085 2063 LLWRIHRAFTSRTGTIEP------SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV 2136 (2342)
Q Consensus 2063 rVWDl~tg~~i~t~~~~~------~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa 2136 (2342)
.+||+.+++......... ......+.+++||..+.....+....... .....+..+...+..+.+.+++..+.
T Consensus 149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (368)
T d1mdah_ 149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI-VGAQCTGAQNCSSQAAQANYPGMLVW 227 (368)
T ss_dssp EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE-CCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeee-eecccccccccceeecccccCcEEEE
Confidence 999999976655442111 12234456677777665555443222111 01112334555566777777776665
Q ss_pred EEeCCCcEEEEECCCCeEEEEEe--c------------CCcEEEEEecCCcEEEEEeCC---------CeEEEEEeC-Cc
Q 000085 2137 SCSDSSDLLLHSIRRGRLIRRLV--G------------VDAHAVSLSSEGVIMTWNKLQ---------HTLSSFTLN-GV 2192 (2342)
Q Consensus 2137 SGS~DGtIrIWDLrTGklIrsL~--g------------h~vssLSfSpDG~IlVwdssd---------GsI~I~dln-G~ 2192 (2342)
+. ++.++++++..+....... . .....+++++++..+++.... ..+.+|+.. ++
T Consensus 228 ~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~ 305 (368)
T d1mdah_ 228 AV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp CB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred ec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc
Confidence 44 4566677766554432211 1 123468889998876654322 247788876 33
Q ss_pred eeeeecCCCCCCeEEEEEccCCCE-EEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2193 LVARAKLPLSGSIGCMEISLDGHS-ALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2193 ~L~s~~~~Hs~~ItsLafSPDGk~-LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
.+... .+...+.+++|+|||+. +++.+. .|+.|+|||
T Consensus 306 ~~~~~--~~~~~~~~~a~spDG~~~ly~s~~----------------------------------------~~~~v~v~D 343 (368)
T d1mdah_ 306 TSGPI--SNGHDSDAIIAAQDGASDNYANSA----------------------------------------GTEVLDIYD 343 (368)
T ss_dssp EEECC--EEEEEECEEEECCSSSCEEEEEET----------------------------------------TTTEEEEEE
T ss_pred EeEEe--cCCCceeEEEECCCCCEEEEEEeC----------------------------------------CCCeEEEEE
Confidence 33332 24467889999999974 433320 267899999
Q ss_pred CCCCeEEEEEecC
Q 000085 2272 LHTLKVFHVLKLG 2284 (2342)
Q Consensus 2272 L~Tgk~L~tL~lg 2284 (2342)
..+++.+.++..+
T Consensus 344 ~~tgk~~~~i~~g 356 (368)
T d1mdah_ 344 AASDQDQSSVELD 356 (368)
T ss_dssp SSSCEEEEECCCC
T ss_pred CCCCCEEEEEECC
Confidence 9999999998843
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.88 E-value=3.8e-08 Score=120.78 Aligned_cols=103 Identities=16% Similarity=-0.061 Sum_probs=78.1
Q ss_pred eeEEEEEcCCCCEEEEEEc---------CCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 1998 SSAVVSITHDKEIITGGHV---------DGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 1998 Svt~VafSpDGklLASGS~---------DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
.+..+.|||||++|+.++. ++.+.|||+.+++ +..+..|.+.+..+.|||||++|+.. .|+.+.+|+..
T Consensus 63 ~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~ 140 (470)
T d2bgra1 63 SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEP 140 (470)
T ss_dssp CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESST
T ss_pred ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECC
Confidence 3556999999999888753 5678999999876 45678899999999999999999985 57889999998
Q ss_pred CCccccccccC-----------------CCCCCccccccCCCCCceeecCC
Q 000085 2069 RAFTSRTGTIE-----------------PSSGMGTPGNSIGSSTPANASAD 2102 (2342)
Q Consensus 2069 tg~~i~t~~~~-----------------~~~~V~svs~SpDG~~Las~s~D 2102 (2342)
++......... .......+.|||||+.++....+
T Consensus 141 ~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred CCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence 87544322111 12233456799999999876544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.63 E-value=6.8e-08 Score=119.17 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=118.1
Q ss_pred EEEEEEcCCcEEEEecCCcccceecc------------------------------cCCCCeEEEEecCCCCEEEEE-eC
Q 000085 2010 IITGGHVDGSIKLLTSDGAKTLETAS------------------------------GHCAPVTCLALSSDSNFLVTG-SQ 2058 (2342)
Q Consensus 2010 lLASGS~DGsIrVWDl~tgkll~tL~------------------------------GHt~~VtcLAfSPDG~~LaSG-S~ 2058 (2342)
.+++|+.+|.|+||++.+++.++++. .|...+.+...+|||++|+.. ..
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 36678889999999998877655431 133456677778999998555 57
Q ss_pred CCceEEEeccCCccccccccCCCCCCccccccCCCCCceee--cCCCccc------------------cccC--CceEEe
Q 000085 2059 DTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANA--SADKSRR------------------RRIE--GPIHVL 2116 (2342)
Q Consensus 2059 DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~--s~D~s~~------------------~~i~--~~l~~L 2116 (2342)
+++|.+||+.+.+...............+.++++|+...+. ..+.... ++.. .....+
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 88999999999876554444456677888999999865332 2221110 1111 111111
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCC-----------------------------------------CcEEEEECCCCeEE
Q 000085 2117 RGHHREILCCCVSSDLGVVVSCSDS-----------------------------------------SDLLLHSIRRGRLI 2155 (2342)
Q Consensus 2117 ~GHs~~Vt~VafSPDg~lLaSGS~D-----------------------------------------GtIrIWDLrTGklI 2155 (2342)
.. ......++|+|+|+++++.+.+ +.+.+++..+...+
T Consensus 173 ~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 173 IV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT 251 (441)
T ss_dssp EE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred ec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence 11 2346788999999998877643 34445555555556
Q ss_pred EEEecC-CcEEEEEecCCcEEEE-EeCCCeEEEEEeC
Q 000085 2156 RRLVGV-DAHAVSLSSEGVIMTW-NKLQHTLSSFTLN 2190 (2342)
Q Consensus 2156 rsL~gh-~vssLSfSpDG~IlVw-dssdGsI~I~dln 2190 (2342)
+.+... ..+.+.++|||++++. +..++++.+|++.
T Consensus 252 ~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 252 RYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp EEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred EEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 666543 3567899999997654 5677899999974
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.55 E-value=5.1e-07 Score=110.51 Aligned_cols=143 Identities=8% Similarity=-0.010 Sum_probs=102.9
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccce-----ecccCCCCeEEEEecCCCCEEEEEeC---------CCceEEEec
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLE-----TASGHCAPVTCLALSSDSNFLVTGSQ---------DTTILLWRI 2067 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~-----tL~GHt~~VtcLAfSPDG~~LaSGS~---------DGTVrVWDl 2067 (2342)
+.|.+|++++.. .|+.|.+||+.+++... ++..|...|.++.|||||++|+.++. ++.+.|||+
T Consensus 22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp CEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence 678899988764 58899999999998654 44556688999999999999998753 567889999
Q ss_pred cCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC--CceEEecC------------------CCCCeEEEE
Q 000085 2068 HRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE--GPIHVLRG------------------HHREILCCC 2127 (2342)
Q Consensus 2068 ~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~--~~l~~L~G------------------Hs~~Vt~Va 2127 (2342)
.++.... ...+...+..+.|||||+.++.........+... ........ +.+....+.
T Consensus 100 ~~~~~~~--l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 100 NKRQLIT--EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp TTTEECC--SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCCcccc--cccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 9875332 3456677888999999999988776655444331 12221111 123346688
Q ss_pred EecCCCEEEEEeCCCc-EEEEE
Q 000085 2128 VSSDLGVVVSCSDSSD-LLLHS 2148 (2342)
Q Consensus 2128 fSPDg~lLaSGS~DGt-IrIWD 2148 (2342)
|||||+.|+....|.+ +..|+
T Consensus 178 wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 178 WSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp ECTTSSEEEEEEEECTTCCEEE
T ss_pred ECCCCCccceeEecCCcCceEE
Confidence 9999999999876644 54443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.51 E-value=6.5e-05 Score=86.01 Aligned_cols=234 Identities=11% Similarity=0.151 Sum_probs=155.7
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceeccc------CCCCeEEEEecCC-CCEEEEE-eCCCceEEEeccCCc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASG------HCAPVTCLALSSD-SNFLVTG-SQDTTILLWRIHRAF 2071 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~G------Ht~~VtcLAfSPD-G~~LaSG-S~DGTVrVWDl~tg~ 2071 (2342)
.-++++++|+++++-...+.|++||.+ |+.+..+.. ....-..+++..+ +.++++. +.++.|.+++....
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~- 103 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ- 103 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC-
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc-
Confidence 348999999999888888999999965 555544421 1112334454444 3333332 22334444443221
Q ss_pred cccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 000085 2072 TSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVL-RGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2072 ~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L-~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLr 2150 (2342)
. ...+ ..+.....++++.+++.++++....+.+.+++.
T Consensus 104 -----------------------~-----------------~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~- 142 (279)
T d1q7fa_ 104 -----------------------F-----------------VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ- 142 (279)
T ss_dssp -----------------------E-----------------EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred -----------------------c-----------------eeecCCCcccccceeccccCCcEEEEeeccceeeEecc-
Confidence 0 1111 123345678899999998888888888888885
Q ss_pred CCeEEEEEecC----CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecC-CCCCCeEEEEEccCCCEEEEEeCCCC
Q 000085 2151 RGRLIRRLVGV----DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKL-PLSGSIGCMEISLDGHSALIGVNSSS 2225 (2342)
Q Consensus 2151 TGklIrsL~gh----~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~-~Hs~~ItsLafSPDGk~LaSGS~DGs 2225 (2342)
+++.+.++... ....+++.++|.+++.+...+.|++|+.+|..+...-. +.......|++.++|+.+++-+.
T Consensus 143 ~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~--- 219 (279)
T d1q7fa_ 143 NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNH--- 219 (279)
T ss_dssp TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS---
T ss_pred CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECC---
Confidence 56777776432 25778999999999999999999999999987765432 24556889999999997775421
Q ss_pred CCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-CCCCCeEEEEEecCCCEEEEE
Q 000085 2226 TNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-GEGQDITALALNKDNTNLLVS 2304 (2342)
Q Consensus 2226 ~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-gHs~~ItsLafSPDG~~LaSG 2304 (2342)
.++.|.+++. +|+.+.++.. ........|++.+||. |+++
T Consensus 220 -------------------------------------~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~ 260 (279)
T d1q7fa_ 220 -------------------------------------NNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-VVLA 260 (279)
T ss_dssp -------------------------------------SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEEE
T ss_pred -------------------------------------CCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc-EEEE
Confidence 1345777774 5776666542 2234578999999996 5556
Q ss_pred eCCCcEEEEeCCCC
Q 000085 2305 TADKQLIVFTDPAL 2318 (2342)
Q Consensus 2305 SsDGsIrVWDi~sL 2318 (2342)
+.++.|++|....+
T Consensus 261 ~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 261 SKDYRLYIYRYVQL 274 (279)
T ss_dssp ETTTEEEEEECSCC
T ss_pred eCCCeEEEEEeeee
Confidence 68999999996655
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=1.2e-05 Score=90.04 Aligned_cols=233 Identities=12% Similarity=0.023 Sum_probs=140.2
Q ss_pred cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC-Cc--eEEEeccCCccccccccCCCCCCccccccCCCCC
Q 000085 2019 SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD-TT--ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSST 2095 (2342)
Q Consensus 2019 sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D-GT--VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~ 2095 (2342)
.|.|.|.+.+ ..+.+..+...+...+|||||+.||-.+.. +. +.+.+...+. ...............++|+|..
T Consensus 20 ~l~i~d~dG~-~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCC-CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence 5777787644 444455567788999999999999876543 33 4444444432 2223344556677889999998
Q ss_pred ceeecCCCccc-----cccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCC--cEEEEECCCCeEEEEEecC-CcEEE
Q 000085 2096 PANASADKSRR-----RRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSS--DLLLHSIRRGRLIRRLVGV-DAHAV 2166 (2342)
Q Consensus 2096 Las~s~D~s~~-----~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DG--tIrIWDLrTGklIrsL~gh-~vssL 2166 (2342)
++......... ............+........+++++..++ +...+| .|.+.++..+......... .....
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~ 176 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 176 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEE
T ss_pred eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccc
Confidence 87655432111 111222333334445555667777776554 444455 4555566555433322222 24567
Q ss_pred EEecCCcEEEEEeCC-CeEEEEEe--CCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCC
Q 000085 2167 SLSSEGVIMTWNKLQ-HTLSSFTL--NGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSG 2243 (2342)
Q Consensus 2167 SfSpDG~IlVwdssd-GsI~I~dl--nG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~ 2243 (2342)
.++++|..+++.... +...+|.. .+.... ...+........|||||+.|+-.+..+.
T Consensus 177 ~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~------------------ 236 (269)
T d2hqsa1 177 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGM------------------ 236 (269)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETT------------------
T ss_pred ccccccceeEEEeecCCceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCC------------------
Confidence 899999988877544 44444443 333322 2335667788999999999986542221
Q ss_pred ccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEec
Q 000085 2244 TEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNK 2296 (2342)
Q Consensus 2244 ~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSP 2296 (2342)
...|+++++..+... .+. ...+.+...+|||
T Consensus 237 --------------------~~~l~~~~~dg~~~~-~lt-~~~g~~~~p~WSP 267 (269)
T d2hqsa1 237 --------------------GSVLNLVSTDGRFKA-RLP-ATDGQVKFPAWSP 267 (269)
T ss_dssp --------------------EEEEEEEETTSCCEE-ECC-CSSSEEEEEEECC
T ss_pred --------------------CcEEEEEECCCCCEE-EEe-CCCCcEEeEEeCC
Confidence 346899999877653 444 3456788889998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.48 E-value=1.4e-05 Score=92.62 Aligned_cols=225 Identities=15% Similarity=0.067 Sum_probs=147.5
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCC
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEP 2080 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~ 2080 (2342)
.++++|||+++++...+++|+.|+.+.. ...+..+...+.+++|++||+++++...++.+.+|+.........
T Consensus 32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~----- 104 (302)
T d2p4oa1 32 NLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE----- 104 (302)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-----
T ss_pred CEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee-----
Confidence 4899999999999999999988886543 334455667899999999999999998899998888765311000
Q ss_pred CCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 000085 2081 SSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG 2160 (2342)
Q Consensus 2081 ~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g 2160 (2342)
.+ .........+.+++.++++++++.+.++.+..+|..++........
T Consensus 105 -------------------------------~~-~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~ 152 (302)
T d2p4oa1 105 -------------------------------TL-LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 152 (302)
T ss_dssp -------------------------------EE-EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred -------------------------------ec-cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC
Confidence 00 0112334578899999999999989999999999988765443332
Q ss_pred C------------CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeee--ecCCCCCCeEEEEEccCCCEEEEEeCCCCC
Q 000085 2161 V------------DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVAR--AKLPLSGSIGCMEISLDGHSALIGVNSSST 2226 (2342)
Q Consensus 2161 h------------~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s--~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~ 2226 (2342)
. ....++++ ++.+++.+...+.+..++..+..... ...........++++++|.+.++...
T Consensus 153 ~~~~~~~~~~~~~~~ngi~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~---- 227 (302)
T d2p4oa1 153 PMLARSNSESVFPAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI---- 227 (302)
T ss_dssp GGGSCSSTTCCSCSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT----
T ss_pred CccceeeccCccccccccccc-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC----
Confidence 1 02334443 23455556777888888876422111 01112345667999999987664421
Q ss_pred CCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEec-CCCCCeEEEEE---ecCCCEEE
Q 000085 2227 NNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKL-GEGQDITALAL---NKDNTNLL 2302 (2342)
Q Consensus 2227 d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~l-gHs~~ItsLaf---SPDG~~La 2302 (2342)
+++|..++.. ++....... ..-...++++| ++|++.|+
T Consensus 228 -------------------------------------~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly 269 (302)
T d2p4oa1 228 -------------------------------------YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY 269 (302)
T ss_dssp -------------------------------------TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred -------------------------------------CCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence 3456666654 332222221 12345789999 67888888
Q ss_pred EEeCC
Q 000085 2303 VSTAD 2307 (2342)
Q Consensus 2303 SGSsD 2307 (2342)
+++..
T Consensus 270 vtt~~ 274 (302)
T d2p4oa1 270 VVTNG 274 (302)
T ss_dssp EEECT
T ss_pred EECCC
Confidence 77654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.41 E-value=2.1e-07 Score=114.69 Aligned_cols=246 Identities=9% Similarity=-0.037 Sum_probs=143.9
Q ss_pred EEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccc-cccCCceEEecCCCCCeEEEEEecC
Q 000085 2053 LVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRR-RRIEGPIHVLRGHHREILCCCVSSD 2131 (2342)
Q Consensus 2053 LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~-~~i~~~l~~L~GHs~~Vt~VafSPD 2131 (2342)
++||+.+|+|+||++.+++.+.++. .|+|++.... +..+.... ............|.....+..++||
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~Ip----------Vfspd~~~g~-g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD 82 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIP----------VFNVDSATGW-GITNESKEILGGDQQYLNGDCHHPHISMTDGRYD 82 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEEC----------SSSBCTTTCT-TTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEE----------eEcCCCCEEE-EECCccceEEecccccccCcccCCCcceecccCC
Confidence 6788999999999999887665542 2566554421 11111111 1111111223346566677777899
Q ss_pred CCEEEEE-eCCCcEEEEECCCCeEEEEEe---cCCcEEEEEecCCcE--EEEEeCCC-----------------eEEEEE
Q 000085 2132 LGVVVSC-SDSSDLLLHSIRRGRLIRRLV---GVDAHAVSLSSEGVI--MTWNKLQH-----------------TLSSFT 2188 (2342)
Q Consensus 2132 g~lLaSG-S~DGtIrIWDLrTGklIrsL~---gh~vssLSfSpDG~I--lVwdssdG-----------------sI~I~d 2188 (2342)
|++++.. ..+++|.++|+.++++.+.+. +...+.+++++||+. ++...... .+..++
T Consensus 83 Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD 162 (441)
T d1qnia2 83 GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAID 162 (441)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeec
Confidence 9988554 578899999999999988775 345788999999983 33222211 112233
Q ss_pred eCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCC-----CCccccccccccccCCCCccCC
Q 000085 2189 LNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQ-----SGTEDFDLASDQSVDNNRFDFP 2263 (2342)
Q Consensus 2189 lnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~-----~~~iaFspd~~~s~ss~~ias~ 2263 (2342)
.....+... ..-.+....+.++|||+++++++.+......+....+...... .....+.+++.. .....
T Consensus 163 ~~t~~v~~q-I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~-----~~v~~ 236 (441)
T d1qnia2 163 AETMDVAWQ-VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNF-----KTIGD 236 (441)
T ss_dssp TTTCSEEEE-EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCC-----BCCTT
T ss_pred CccceeeEE-EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCE-----EEeCC
Confidence 332222111 1123567889999999999988754332111100000000000 000111222111 11123
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEeCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLV-STADKQLIVFTDPA 2317 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaS-GSsDGsIrVWDi~s 2317 (2342)
++.+.|++....+.+..++. . .....+.++|||+++++ +..|++|.|||+..
T Consensus 237 ~~v~vvd~~~~~~v~~~IPv-g-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 237 SKVPVVDGRGESEFTRYIPV-P-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp CCCCEEECSSSCSSEEEECC-B-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred CCcEEEEcccCCceEEEEeC-C-CCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 66778887777777888873 3 33578999999998764 57899999999654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.40 E-value=6.8e-05 Score=87.92 Aligned_cols=237 Identities=9% Similarity=0.082 Sum_probs=142.5
Q ss_pred EEEEEcCCCCEEEEEEc-------CCcEEEEecCCcccceecccC----CCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 2000 AVVSITHDKEIITGGHV-------DGSIKLLTSDGAKTLETASGH----CAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~-------DGsIrVWDl~tgkll~tL~GH----t~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
...+|.++|++.++... +|.|..||..++......... .+.-..++|.++++.++.+...+.|...+..
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~ 100 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD 100 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCC
Confidence 44789999997765432 467889998887644332211 1234679999999988888777778877776
Q ss_pred CCccccccccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCC-CCCeEEEEEecCCCEEEEEeC-------
Q 000085 2069 RAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH-HREILCCCVSSDLGVVVSCSD------- 2140 (2342)
Q Consensus 2069 tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH-s~~Vt~VafSPDg~lLaSGS~------- 2140 (2342)
........... .+. -...+.+++.++|.+.+|-..
T Consensus 101 g~~~~~~~~~~-------------------------------------~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~ 143 (314)
T d1pjxa_ 101 GTFEEIAKKDS-------------------------------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 143 (314)
T ss_dssp SCEEECCSBCT-------------------------------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSC
T ss_pred CcEEEEEeccc-------------------------------------cccccCCCcEEEECCCCCEEEecCccCccccc
Confidence 53211100000 000 012344555555555444221
Q ss_pred --------CCcEEEEECCCCeEEEEEec-CCcEEEEEecCCc-----EEEEEeCCCeEEEEEeC--Cceeeee---cC--
Q 000085 2141 --------SSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGV-----IMTWNKLQHTLSSFTLN--GVLVARA---KL-- 2199 (2342)
Q Consensus 2141 --------DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~-----IlVwdssdGsI~I~dln--G~~L~s~---~~-- 2199 (2342)
+|.|+.++. .|+....... ....-+++++++. +++.+...+.|..|++. +...... ..
T Consensus 144 ~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~ 222 (314)
T d1pjxa_ 144 YTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222 (314)
T ss_dssp CCBTTSSSCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred ccceeccCCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc
Confidence 223433433 2333222221 2245678888764 66777778888888764 2221111 11
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEE
Q 000085 2200 PLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFH 2279 (2342)
Q Consensus 2200 ~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~ 2279 (2342)
.+......+++..+|+..++.. ..+.|.+||..+++.+.
T Consensus 223 ~~~~~pdGiavD~~GnlyVa~~-----------------------------------------~~g~I~~~dp~~g~~~~ 261 (314)
T d1pjxa_ 223 THEGGADGMDFDEDNNLLVANW-----------------------------------------GSSHIEVFGPDGGQPKM 261 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEE-----------------------------------------TTTEEEEECTTCBSCSE
T ss_pred cccccceeeEEecCCcEEEEEc-----------------------------------------CCCEEEEEeCCCCEEEE
Confidence 1233467899999998776542 14679999988887766
Q ss_pred EEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCC
Q 000085 2280 VLKLGEGQDITALALNKDNTNL-LVSTADKQLIVFTDP 2316 (2342)
Q Consensus 2280 tL~lgHs~~ItsLafSPDG~~L-aSGSsDGsIrVWDi~ 2316 (2342)
.+. .....+++++|.+|++.| ++.+.+|.|..++.+
T Consensus 262 ~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 262 RIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 666 445678999999999755 455677889888854
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.37 E-value=1.5e-05 Score=90.46 Aligned_cols=232 Identities=12% Similarity=0.059 Sum_probs=144.5
Q ss_pred EEEEEcCCCCEEEEE-EcCCcEEEEecCCcccce-ecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccc
Q 000085 2000 AVVSITHDKEIITGG-HVDGSIKLLTSDGAKTLE-TASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGT 2077 (2342)
Q Consensus 2000 t~VafSpDGklLASG-S~DGsIrVWDl~tgkll~-tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~ 2077 (2342)
..++++++|++.++. +..+.+..++..+..... ...+. .....++++++|+++++....+.+++++-.+....
T Consensus 17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~---- 91 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV---- 91 (260)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE----
T ss_pred CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeeccceee----
Confidence 458999999966654 455677777655432222 22222 33577899999988887766666655443321100
Q ss_pred cCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 000085 2078 IEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRR 2157 (2342)
Q Consensus 2078 ~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrs 2157 (2342)
.. ........++++.++++++++-..+..+..++.........
T Consensus 92 ------------------------------------~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~ 134 (260)
T d1rwia_ 92 ------------------------------------LP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 134 (260)
T ss_dssp ------------------------------------CC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC
T ss_pred ------------------------------------ee-eeeeeecccccccccceeEeeccccccccccccccceeeee
Confidence 00 11124567899999998888777777777777654432221
Q ss_pred -Eec-CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCccccc
Q 000085 2158 -LVG-VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQ 2235 (2342)
Q Consensus 2158 -L~g-h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw 2235 (2342)
..+ .....++++++|.+++.+...+.+..++.++..........-.....|+++++|.++++...
T Consensus 135 ~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~------------- 201 (260)
T d1rwia_ 135 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN------------- 201 (260)
T ss_dssp CCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT-------------
T ss_pred eecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC-------------
Confidence 111 23578899999999888888889999998776554444345567889999999987775421
Q ss_pred ccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 000085 2236 GLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTD 2315 (2342)
Q Consensus 2236 ~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi 2315 (2342)
.+.|..++..... ...+....-.....|+++++|..+++-..+++|+.++.
T Consensus 202 ----------------------------~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 202 ----------------------------TNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp ----------------------------TTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred ----------------------------CCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 2334444443322 11221122245689999999988777777788877763
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.35 E-value=3.4e-05 Score=92.19 Aligned_cols=270 Identities=8% Similarity=0.028 Sum_probs=151.3
Q ss_pred EEEEEc--CCcEEEEecC--Cccc--cee-cccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccc-ccCCCC
Q 000085 2011 ITGGHV--DGSIKLLTSD--GAKT--LET-ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTG-TIEPSS 2082 (2342)
Q Consensus 2011 LASGS~--DGsIrVWDl~--tgkl--l~t-L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~-~~~~~~ 2082 (2342)
|..|++ .+.|+++.++ ++++ +.. ...+...+.-|+|++++++|++.+. +.+..|.+......... ......
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence 445543 4467665544 4432 111 1224455678999999999988765 46777777643222211 112234
Q ss_pred CCccccccCCCCCc--eeecCCCc--ccccc------------------CCceE-EecCCCCCeEEEEEecCCCEEEEEe
Q 000085 2083 GMGTPGNSIGSSTP--ANASADKS--RRRRI------------------EGPIH-VLRGHHREILCCCVSSDLGVVVSCS 2139 (2342)
Q Consensus 2083 ~V~svs~SpDG~~L--as~s~D~s--~~~~i------------------~~~l~-~L~GHs~~Vt~VafSPDg~lLaSGS 2139 (2342)
....+.++++++.+ ++...... ..+.. ..... .-+.....+.++.|+|||+++++++
T Consensus 84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d 163 (365)
T d1jofa_ 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence 45677788888743 22211111 00000 00010 1112233478999999999888776
Q ss_pred C-CCcEEEEECCC-CeEE--EEEe----cCCcEEEEEecCCcEEE-EEeCCCeEEEEEeCCceee---e---ec------
Q 000085 2140 D-SSDLLLHSIRR-GRLI--RRLV----GVDAHAVSLSSEGVIMT-WNKLQHTLSSFTLNGVLVA---R---AK------ 2198 (2342)
Q Consensus 2140 ~-DGtIrIWDLrT-GklI--rsL~----gh~vssLSfSpDG~IlV-wdssdGsI~I~dlnG~~L~---s---~~------ 2198 (2342)
. ...|.+|+... +... ..+. +...+.++|+|+|+++. .+..++.|.+|+.+..... . ..
T Consensus 164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 243 (365)
T d1jofa_ 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence 4 45788887643 3332 2222 23468899999998664 4456788999998642111 0 00
Q ss_pred -------CCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEE
Q 000085 2199 -------LPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLD 2271 (2342)
Q Consensus 2199 -------~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWD 2271 (2342)
..+......+.++|||++|+++...... ...+.|..|+
T Consensus 244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~-----------------------------------~~~~~i~~~~ 288 (365)
T d1jofa_ 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-----------------------------------ELQGYIAGFK 288 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-----------------------------------TSCCEEEEEE
T ss_pred cccccccccccCCccceEECCCCCEEEEEcccCCC-----------------------------------ccceEEEEEE
Confidence 0122345678999999999877421000 0123455555
Q ss_pred CCCC-eEEEE---Ee-cCCCCCeEEEEEec-CCCEEEEE-eCCCcEEEEeCC
Q 000085 2272 LHTL-KVFHV---LK-LGEGQDITALALNK-DNTNLLVS-TADKQLIVFTDP 2316 (2342)
Q Consensus 2272 L~Tg-k~L~t---L~-lgHs~~ItsLafSP-DG~~LaSG-SsDGsIrVWDi~ 2316 (2342)
+... ..... .. ...+....+++++| +|++|+++ ..++.|.||+..
T Consensus 289 ~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 289 LRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp ECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred ecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 5432 11111 11 12345568899998 89988777 577999999853
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=0.00017 Score=80.22 Aligned_cols=210 Identities=15% Similarity=0.090 Sum_probs=124.8
Q ss_pred EEEEcCCCCEEEEEEcCC---cEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-CCceEEEeccCCcccccc
Q 000085 2001 VVSITHDKEIITGGHVDG---SIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-DTTILLWRIHRAFTSRTG 2076 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DG---sIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-DGTVrVWDl~tg~~i~t~ 2076 (2342)
.-+|||||+.||.....+ .+.+.+..++.. ..+..+.+.+.+..|+|+|..++..+. ++...++...........
T Consensus 43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~ 121 (269)
T d2hqsa1 43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 121 (269)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred eeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccccee
Confidence 478999999888765443 366666665543 345557788899999999999887664 333333333322211111
Q ss_pred ccCCCCCCccccccCCCCCceeecC-CCc-c--cccc-CCceEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEE
Q 000085 2077 TIEPSSGMGTPGNSIGSSTPANASA-DKS-R--RRRI-EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS---DLLLHS 2148 (2342)
Q Consensus 2077 ~~~~~~~V~svs~SpDG~~Las~s~-D~s-~--~~~i-~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG---tIrIWD 2148 (2342)
............+++++........ ++. . .... ......+..+........|+|++..++..+.++ .+.+.|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~ 201 (269)
T d2hqsa1 122 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 201 (269)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred eeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEee
Confidence 1122222223344455544433221 211 1 1111 223344455666778889999999988776554 455556
Q ss_pred CCCCeEEEEEecCCcEEEEEecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEcc
Q 000085 2149 IRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISL 2212 (2342)
Q Consensus 2149 LrTGklIrsL~gh~vssLSfSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSP 2212 (2342)
...+..............+|||||+.+++.... ..+++++++|....... ...+.+...+|||
T Consensus 202 ~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt-~~~g~~~~p~WSP 267 (269)
T d2hqsa1 202 LATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP-ATDGQVKFPAWSP 267 (269)
T ss_dssp TTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC-CSSSEEEEEEECC
T ss_pred cccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEe-CCCCcEEeEEeCC
Confidence 655554333333346778999999988876433 36788888887654432 3466778888987
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.16 E-value=0.00017 Score=82.53 Aligned_cols=177 Identities=13% Similarity=0.162 Sum_probs=118.3
Q ss_pred EEEcCC-CCEEEE-EEcCCcEEEEecCCcccceecc-cCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCcccccccc
Q 000085 2002 VSITHD-KEIITG-GHVDGSIKLLTSDGAKTLETAS-GHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTI 2078 (2342)
Q Consensus 2002 VafSpD-GklLAS-GS~DGsIrVWDl~tgkll~tL~-GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~ 2078 (2342)
+++..+ +..+++ .+.++.|.+++.. ++....+. .+.....++++.++|.++++....+.+.+++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-------- 145 (279)
T d1q7fa_ 75 VAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-------- 145 (279)
T ss_dssp EEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--------
T ss_pred ccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc--------
Confidence 444444 334443 3455677777754 45444442 34556788899888888877666666666554321
Q ss_pred CCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 000085 2079 EPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRL 2158 (2342)
Q Consensus 2079 ~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL 2158 (2342)
.+... ....+......+++.+++..+++....+.|++||. +|+.+.++
T Consensus 146 ----------------~~~~~---------------g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~ 193 (279)
T d1q7fa_ 146 ----------------VLHKF---------------GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQI 193 (279)
T ss_dssp ----------------EEEEE---------------ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEE
T ss_pred ----------------eeecc---------------cccccccccceeeeccceeEEeeeccccceeeeec-CCceeeee
Confidence 11000 01234566788899999998888889999999996 67788877
Q ss_pred ecC----CcEEEEEecCCcEEEEEeC-CCeEEEEEeCCceeeeecCC-CCCCeEEEEEccCCCEEEE
Q 000085 2159 VGV----DAHAVSLSSEGVIMTWNKL-QHTLSSFTLNGVLVARAKLP-LSGSIGCMEISLDGHSALI 2219 (2342)
Q Consensus 2159 ~gh----~vssLSfSpDG~IlVwdss-dGsI~I~dlnG~~L~s~~~~-Hs~~ItsLafSPDGk~LaS 2219 (2342)
... ....++++++|++++.+.. .+.|.+|+.+|..+...... .....+.|++.+||.++++
T Consensus 194 g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~ 260 (279)
T d1q7fa_ 194 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA 260 (279)
T ss_dssp SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred cccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE
Confidence 432 2578999999999998864 45799999888766543322 3346889999999976653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.16 E-value=8.2e-05 Score=87.17 Aligned_cols=221 Identities=10% Similarity=0.026 Sum_probs=145.5
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCC--CceEEEecc--CCcccccc
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQD--TTILLWRIH--RAFTSRTG 2076 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~D--GTVrVWDl~--tg~~i~t~ 2076 (2342)
.++|.++|++.++-..++.|+.|+.++++....+.........+++++||+++++...+ ....++.+. ........
T Consensus 44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~ 123 (319)
T d2dg1a1 44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII 123 (319)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeec
Confidence 48899999988888889999999988876666555566678899999999988876543 344444443 32211111
Q ss_pred -ccCCCCCCccccccCCCCCceeecCCCc-------ccccc-CCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEE
Q 000085 2077 -TIEPSSGMGTPGNSIGSSTPANASADKS-------RRRRI-EGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLL 2146 (2342)
Q Consensus 2077 -~~~~~~~V~svs~SpDG~~Las~s~D~s-------~~~~i-~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrI 2146 (2342)
..........+.+.++|...++...... ..... .+.+..+...-...+.++|+++++.| ++-+..+.|..
T Consensus 124 ~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~ 203 (319)
T d2dg1a1 124 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR 203 (319)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEE
Confidence 1112233445677888876655433211 11111 12233333333456789999999865 55567889999
Q ss_pred EECCC-CeEEEEE--------ecC-CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCC-----CCCCeEEEEEc
Q 000085 2147 HSIRR-GRLIRRL--------VGV-DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLP-----LSGSIGCMEIS 2211 (2342)
Q Consensus 2147 WDLrT-GklIrsL--------~gh-~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~-----Hs~~ItsLafS 2211 (2342)
||+.. +...... ... ...-+++..+|++.+.+...+.|.+|+..|+.+.....+ +...++|++|.
T Consensus 204 ~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~ 283 (319)
T d2dg1a1 204 IALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFI 283 (319)
T ss_dssp EEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred EEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEe
Confidence 99863 2211111 111 145689999999999998899999999999888776654 44568899999
Q ss_pred cCCCEEEEEe
Q 000085 2212 LDGHSALIGV 2221 (2342)
Q Consensus 2212 PDGk~LaSGS 2221 (2342)
+++..+++.+
T Consensus 284 ~~~~~~~~t~ 293 (319)
T d2dg1a1 284 PGTNQLIICS 293 (319)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCEEEEEc
Confidence 9888777665
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.04 E-value=0.00011 Score=84.94 Aligned_cols=228 Identities=11% Similarity=-0.020 Sum_probs=142.9
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCcccc-
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGAKTL- 2031 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tgkll- 2031 (2342)
.-++|..+++...++.|..|+... ... .+.. ......+++|++||++++++..++.+.+|+.......
T Consensus 35 v~pdG~l~vt~~~~~~I~~i~p~g-~~~-------~~~~---~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 35 SAPDGTIFVTNHEVGEIVSITPDG-NQQ-------IHAT---VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTC-CEE-------EEEE---CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred ECCCCCEEEEeCCCCEEEEEeCCC-CEE-------EEEc---CCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence 345677777877788887777433 111 0111 1123567999999999999988999988887643221
Q ss_pred eec--ccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCcccccc
Q 000085 2032 ETA--SGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRI 2109 (2342)
Q Consensus 2032 ~tL--~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i 2109 (2342)
..+ .........+++.++++++++.+.++.+..++...+...... .+..
T Consensus 104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~------------------------~~~~----- 154 (302)
T d2p4oa1 104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL------------------------EHPM----- 154 (302)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE------------------------ECGG-----
T ss_pred eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEe------------------------cCCc-----
Confidence 111 123456789999999999999888888888877664211000 0000
Q ss_pred CCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE---E-EecCCcEEEEEecCCcEEEEEeCCCeEE
Q 000085 2110 EGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIR---R-LVGVDAHAVSLSSEGVIMTWNKLQHTLS 2185 (2342)
Q Consensus 2110 ~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIr---s-L~gh~vssLSfSpDG~IlVwdssdGsI~ 2185 (2342)
...............+.++. +.++++.+..+.|..+++....... . ........+++++||++++....++.|.
T Consensus 155 -~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~ 232 (302)
T d2p4oa1 155 -LARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVV 232 (302)
T ss_dssp -GSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred -cceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEE
Confidence 00000011223445566653 3455667778888888876543211 1 1223356799999999988888889999
Q ss_pred EEEeCCceeeeecCC-CCCCeEEEEE---ccCCCEEEEEeC
Q 000085 2186 SFTLNGVLVARAKLP-LSGSIGCMEI---SLDGHSALIGVN 2222 (2342)
Q Consensus 2186 I~dlnG~~L~s~~~~-Hs~~ItsLaf---SPDGk~LaSGS~ 2222 (2342)
.++..|+........ .-...++++| ++|++.|++++.
T Consensus 233 ~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 233 RIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp EECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence 998887643322221 3456899999 778898887764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=0.00029 Score=79.64 Aligned_cols=180 Identities=7% Similarity=0.024 Sum_probs=120.3
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE 2079 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~ 2079 (2342)
..++++++|+++++....+.+++++-.++..+....+ .....++++.++++++++-..+..+.+++.......
T Consensus 60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~------ 132 (260)
T d1rwia_ 60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT------ 132 (260)
T ss_dssp CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE------
T ss_pred eEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceee------
Confidence 3488999999888887777777776555544433332 345789999999988777655555555554331100
Q ss_pred CCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2080 PSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2080 ~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
. .. ..-.....+++++++++.+++...++.|..+|...........
T Consensus 133 ------------------~---------------~~-~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~ 178 (260)
T d1rwia_ 133 ------------------V---------------LP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF 178 (260)
T ss_dssp ------------------E---------------CC-CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC
T ss_pred ------------------e---------------ee-ecccCCcceeeecCCCCEeeeccccccccccccccceeeeeec
Confidence 0 00 0011234678999999988888888999999986544332211
Q ss_pred c--CCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEE
Q 000085 2160 G--VDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIG 2220 (2342)
Q Consensus 2160 g--h~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSG 2220 (2342)
. .....++++++|.+++.+...+.+..++.++..........-.....|+++++|..+++-
T Consensus 179 ~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad 241 (260)
T d1rwia_ 179 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVAD 241 (260)
T ss_dssp SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEE
T ss_pred cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEE
Confidence 1 235789999999999999888888888877654333322233567899999999877753
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.86 E-value=0.00039 Score=82.73 Aligned_cols=220 Identities=9% Similarity=0.021 Sum_probs=126.5
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc--cCCCCeEEEEecCCCCEE--EEEe-CCCceEEEeccCCcc---
Q 000085 2001 VVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS--GHCAPVTCLALSSDSNFL--VTGS-QDTTILLWRIHRAFT--- 2072 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~--GHt~~VtcLAfSPDG~~L--aSGS-~DGTVrVWDl~tg~~--- 2072 (2342)
.++|++++++|.+... +.+..|.+.....+.... ......+.++++++++.+ +++. ..++|..+.+.....
T Consensus 44 ~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~ 122 (365)
T d1jofa_ 44 WMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122 (365)
T ss_dssp EEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred EEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcce
Confidence 4899999998887754 567778766422121111 122345678889998844 3332 245555554432110
Q ss_pred ---------cc----ccccCCCCCCccccccCCCCCceeecCC--CccccccC--Cce---EE--ecCCCCCeEEEEEec
Q 000085 2073 ---------SR----TGTIEPSSGMGTPGNSIGSSTPANASAD--KSRRRRIE--GPI---HV--LRGHHREILCCCVSS 2130 (2342)
Q Consensus 2073 ---------i~----t~~~~~~~~V~svs~SpDG~~Las~s~D--~s~~~~i~--~~l---~~--L~GHs~~Vt~VafSP 2130 (2342)
.. .........+..+.++|||+++.+.... .+..++.. ..+ .. ..........++|+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p 202 (365)
T d1jofa_ 123 VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP 202 (365)
T ss_dssp EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred eEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC
Confidence 00 0011122345688999999988666533 33333221 111 11 122346788999999
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCeE--EEE---EecC----------------CcEEEEEecCCcEEEEEeC------CC
Q 000085 2131 DLGVVV-SCSDSSDLLLHSIRRGRL--IRR---LVGV----------------DAHAVSLSSEGVIMTWNKL------QH 2182 (2342)
Q Consensus 2131 Dg~lLa-SGS~DGtIrIWDLrTGkl--Irs---L~gh----------------~vssLSfSpDG~IlVwdss------dG 2182 (2342)
++++++ +...+++|.+|++..+.. +.. +..- ....+.++|||++++...+ ..
T Consensus 203 dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~ 282 (365)
T d1jofa_ 203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG 282 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCC
T ss_pred CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccce
Confidence 999875 455688999999876532 222 2110 1356889999998776533 23
Q ss_pred eEEEEEeC--Cceeeee----cCCCCCCeEEEEEcc-CCCEEEEEe
Q 000085 2183 TLSSFTLN--GVLVARA----KLPLSGSIGCMEISL-DGHSALIGV 2221 (2342)
Q Consensus 2183 sI~I~dln--G~~L~s~----~~~Hs~~ItsLafSP-DGk~LaSGS 2221 (2342)
.+..|.+. +...... .........+++++| +|++|+++.
T Consensus 283 ~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~ 328 (365)
T d1jofa_ 283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred EEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEe
Confidence 47777764 2111111 111345667899998 899998774
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00099 Score=82.05 Aligned_cols=219 Identities=13% Similarity=0.023 Sum_probs=124.1
Q ss_pred EEEEEcCCCCEEEEEE---------cCCcEEEEecCCccccee--cccCCCCeEEEEecCCCCEEEEEeCCCceEEEecc
Q 000085 2000 AVVSITHDKEIITGGH---------VDGSIKLLTSDGAKTLET--ASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIH 2068 (2342)
Q Consensus 2000 t~VafSpDGklLASGS---------~DGsIrVWDl~tgkll~t--L~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~ 2068 (2342)
....||||+++++.+. ..+.+.++|+.++..... .......+....|||||+.||-.. ++.+.+.+..
T Consensus 64 ~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~ 142 (465)
T d1xfda1 64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV 142 (465)
T ss_dssp SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred ceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence 3478999999877664 356789999998865433 233345566789999999998765 6677777776
Q ss_pred CCccccccccCCC-----------------CCCccccccCCCCCceeecCCCccc--cc----c---------------C
Q 000085 2069 RAFTSRTGTIEPS-----------------SGMGTPGNSIGSSTPANASADKSRR--RR----I---------------E 2110 (2342)
Q Consensus 2069 tg~~i~t~~~~~~-----------------~~V~svs~SpDG~~Las~s~D~s~~--~~----i---------------~ 2110 (2342)
++...+....+.. ..-..+.|||||+.++....|.... +. . +
T Consensus 143 ~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G 222 (465)
T d1xfda1 143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG 222 (465)
T ss_dssp SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccC
Confidence 6543222111111 1113455899999998765332110 00 0 0
Q ss_pred C--c---eEEe-----------------cCCCCCeEEEEEecCCCEEEEEeC-C---CcEEEEECCCCeEEEEEecCC--
Q 000085 2111 G--P---IHVL-----------------RGHHREILCCCVSSDLGVVVSCSD-S---SDLLLHSIRRGRLIRRLVGVD-- 2162 (2342)
Q Consensus 2111 ~--~---l~~L-----------------~GHs~~Vt~VafSPDg~lLaSGS~-D---GtIrIWDLrTGklIrsL~gh~-- 2162 (2342)
. + +..+ ..+...+..+.|++++++++.... + ..+.++|..+|++...+....
T Consensus 223 ~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~ 302 (465)
T d1xfda1 223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA 302 (465)
T ss_dssp SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCc
Confidence 0 0 0001 011223677889999886655332 2 368889999998766554221
Q ss_pred -----cEEEEEecCCcEE--EEEe-CCC--eEEEEEeC-------CceeeeecCCCCCCeEEE-EEccCCCEEEEE
Q 000085 2163 -----AHAVSLSSEGVIM--TWNK-LQH--TLSSFTLN-------GVLVARAKLPLSGSIGCM-EISLDGHSALIG 2220 (2342)
Q Consensus 2163 -----vssLSfSpDG~Il--Vwds-sdG--sI~I~dln-------G~~L~s~~~~Hs~~ItsL-afSPDGk~LaSG 2220 (2342)
.....+++||..+ +|.. .+| .+..+.+. +..+... ....-.|..+ .|+.+++.+.-.
T Consensus 303 wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~L-T~G~w~V~~i~~~d~~~~~vyF~ 377 (465)
T d1xfda1 303 WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI-TSGDWDVTKILAYDEKGNKIYFL 377 (465)
T ss_dssp CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS-CCSSSCEEEEEEEETTTTEEEEE
T ss_pred eEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEe-ccCCceEEEEEEEcCCCCEEEEE
Confidence 2346789999743 4432 233 34444331 2222211 1123455665 688888777543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.73 E-value=0.00095 Score=73.93 Aligned_cols=213 Identities=8% Similarity=-0.037 Sum_probs=108.5
Q ss_pred EEcCC--CCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeC-CC-----ceEEEeccCCcccc
Q 000085 2003 SITHD--KEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQ-DT-----TILLWRIHRAFTSR 2074 (2342)
Q Consensus 2003 afSpD--GklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~-DG-----TVrVWDl~tg~~i~ 2074 (2342)
.++|| |+.++..+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.|+-.+. ++ .|.+++..++....
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 35788 99877654 677888899988754 56667788999999999999886532 22 25555665554322
Q ss_pred cc-----ccCCCCCCccccccCCCCCceeecCCCccc-------cccCCceEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 000085 2075 TG-----TIEPSSGMGTPGNSIGSSTPANASADKSRR-------RRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDSS 2142 (2342)
Q Consensus 2075 t~-----~~~~~~~V~svs~SpDG~~Las~s~D~s~~-------~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~DG 2142 (2342)
.. ............++|+|+.++......... ....... ....+......+.+.+.+..++....+.
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN-FVPLNLGPATHILFADGRRVIGRNTFEL 161 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE-EEECCSCSCSEEEEETTEEEEEESCSCC
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce-eEEecCCccceeeecCCCeEEEeecccc
Confidence 11 011122345667899999887654332111 1111111 1111222333333333333333332221
Q ss_pred -----------cEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEEEeC-CCeEEEEEeCCceeeeecCCCCCCeEEEE
Q 000085 2143 -----------DLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTWNKL-QHTLSSFTLNGVLVARAKLPLSGSIGCME 2209 (2342)
Q Consensus 2143 -----------tIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVwdss-dGsI~I~dlnG~~L~s~~~~Hs~~ItsLa 2209 (2342)
...+.....+......... ......++++..+..++.. ...|.++++.|..+....... ......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~--~~~~~~ 239 (281)
T d1k32a2 162 PHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRH 239 (281)
T ss_dssp TTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEE
T ss_pred ceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeecCC--Cccccc
Confidence 1122222222222222222 2334445555433333221 235777777776655433222 223346
Q ss_pred EccCCCEEEEE
Q 000085 2210 ISLDGHSALIG 2220 (2342)
Q Consensus 2210 fSPDGk~LaSG 2220 (2342)
|+|||+.|+..
T Consensus 240 ~SpDG~~I~f~ 250 (281)
T d1k32a2 240 LNTDGRRILFS 250 (281)
T ss_dssp EEESSSCEEEE
T ss_pred CcCCCCEEEEE
Confidence 89999988753
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.65 E-value=0.0054 Score=71.24 Aligned_cols=223 Identities=9% Similarity=-0.024 Sum_probs=133.5
Q ss_pred eEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-----ccccc-CCceE
Q 000085 2041 VTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-----RRRRI-EGPIH 2114 (2342)
Q Consensus 2041 VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-----~~~~i-~~~l~ 2114 (2342)
+..++|.++|++.++-...+.|..|+..+....... .........+++++||..+++...+.. ..... ...+.
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence 456788888887777667777777777664322221 222334556778888877665443211 11111 11222
Q ss_pred EecCC---CCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCeEEEEEec-CCcEEEEEecCCc-EEEEEeCCCe
Q 000085 2115 VLRGH---HREILCCCVSSDLGVVVSCSD------SSDLLLHSIRRGRLIRRLVG-VDAHAVSLSSEGV-IMTWNKLQHT 2183 (2342)
Q Consensus 2115 ~L~GH---s~~Vt~VafSPDg~lLaSGS~------DGtIrIWDLrTGklIrsL~g-h~vssLSfSpDG~-IlVwdssdGs 2183 (2342)
.+..+ ....+.+++.++|++.++... .+.+..++...+........ ....-+++++||+ +++.+...+.
T Consensus 121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~ 200 (319)
T d2dg1a1 121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR 200 (319)
T ss_dssp EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCc
Confidence 22222 234678999999987776432 23355555544333222222 2356799999997 5566777889
Q ss_pred EEEEEeCC--ceeee------ecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCcccccccccccc
Q 000085 2184 LSSFTLNG--VLVAR------AKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSV 2255 (2342)
Q Consensus 2184 I~I~dlnG--~~L~s------~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ 2255 (2342)
|..|+++. ..... ...........|++..+|++.++..
T Consensus 201 I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~---------------------------------- 246 (319)
T d2dg1a1 201 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY---------------------------------- 246 (319)
T ss_dssp EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE----------------------------------
T ss_pred eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc----------------------------------
Confidence 99998752 11110 0111223466799999998776543
Q ss_pred CCCCccCCCCeEEEEECCCCeEEEEEec-----CCCCCeEEEEEecCCCEEEEEeC
Q 000085 2256 DNNRFDFPSPSICFLDLHTLKVFHVLKL-----GEGQDITALALNKDNTNLLVSTA 2306 (2342)
Q Consensus 2256 ss~~ias~DGsIrIWDL~Tgk~L~tL~l-----gHs~~ItsLafSPDG~~LaSGSs 2306 (2342)
..+.|.++|- .|+.+..+.. ++...+++++|.+++..+++...
T Consensus 247 -------~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 247 -------GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp -------TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred -------CCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 1567899995 6888887763 23446889999998887776654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.64 E-value=0.0035 Score=72.87 Aligned_cols=195 Identities=10% Similarity=0.044 Sum_probs=112.9
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEecCCcccceecc---cCC-CCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccc
Q 000085 2000 AVVSITHDKEIITGGHVDGSIKLLTSDGAKTLETAS---GHC-APVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~---GHt-~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t 2075 (2342)
..++|.++|+.++++...+.|..++.+++....... +.. ...+.+++.++|++.+|-+.. ....|+.....
T Consensus 74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~-~~~~~~~~~~~---- 148 (314)
T d1pjxa_ 74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAG-EVAPADYTRSM---- 148 (314)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBC-BCTTSCCCBTT----
T ss_pred eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCcc-Cccccccccee----
Confidence 458999999977777777778888887653222111 111 135778899998877764321 11111111000
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCC-----EEEEEeCCCcEEEEECC
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLG-----VVVSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~-----lLaSGS~DGtIrIWDLr 2150 (2342)
...... ...+.++| ....+..+-...+.++|+++++ +.++-+..+.|..||+.
T Consensus 149 --~~~~G~--v~~~~~dg------------------~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~ 206 (314)
T d1pjxa_ 149 --QEKFGS--IYCFTTDG------------------QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp --SSSCEE--EEEECTTS------------------CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred --ccCCce--EEEEeecC------------------ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeecc
Confidence 000000 00111111 1122222233457889998765 55666778899999876
Q ss_pred CCeEEE------EEecC---CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEe
Q 000085 2151 RGRLIR------RLVGV---DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGV 2221 (2342)
Q Consensus 2151 TGklIr------sL~gh---~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS 2221 (2342)
....+. .+... ...-+++..+|++.+.....+.|.+|+..+..+..........+++++|.+|++.|+...
T Consensus 207 ~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~ 286 (314)
T d1pjxa_ 207 GPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEE
Confidence 432222 11111 135689999999999888889999999875443322222346789999999998665553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00063 Score=83.85 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=88.8
Q ss_pred EcCCCCEEEEEEcCCcEEEEecCCcccceeccc---CCCCeEEEEecCCCCEEEEEe---------CCCceEEEeccCCc
Q 000085 2004 ITHDKEIITGGHVDGSIKLLTSDGAKTLETASG---HCAPVTCLALSSDSNFLVTGS---------QDTTILLWRIHRAF 2071 (2342)
Q Consensus 2004 fSpDGklLASGS~DGsIrVWDl~tgkll~tL~G---Ht~~VtcLAfSPDG~~LaSGS---------~DGTVrVWDl~tg~ 2071 (2342)
|.+++.++.. ..+|.|.+||+.+++....+.. +.-.+....||||+++++... ..+.+.++|+.++.
T Consensus 24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence 5566655443 3578899999988865433333 223577788999999987763 35678899998865
Q ss_pred ccccc-ccCCCCCCccccccCCCCCceeecCCCcccccc--CCceEEe---------cCCCC---------CeEEEEEec
Q 000085 2072 TSRTG-TIEPSSGMGTPGNSIGSSTPANASADKSRRRRI--EGPIHVL---------RGHHR---------EILCCCVSS 2130 (2342)
Q Consensus 2072 ~i~t~-~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i--~~~l~~L---------~GHs~---------~Vt~VafSP 2130 (2342)
..... .......+....|||||+.++....+....... ...++.. .|..+ .-.++-|||
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP 182 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP 182 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence 43221 222334566789999999998776554433221 1112111 11111 124677999
Q ss_pred CCCEEEEEeC-CCcEEEEEC
Q 000085 2131 DLGVVVSCSD-SSDLLLHSI 2149 (2342)
Q Consensus 2131 Dg~lLaSGS~-DGtIrIWDL 2149 (2342)
||+.|+.... +..|..+.+
T Consensus 183 Dgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 183 DGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp TSSEEEEEEEECTTSCEEEE
T ss_pred CCCeEEEEEecccccceeec
Confidence 9999988763 344544443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.07 E-value=0.0085 Score=65.95 Aligned_cols=190 Identities=8% Similarity=0.032 Sum_probs=97.2
Q ss_pred EEEEEcCCCCEEEEEEc-CC-----cEEEEecCCcccceecc------cCCCCeEEEEecCCCCEEEEEeCC------Cc
Q 000085 2000 AVVSITHDKEIITGGHV-DG-----SIKLLTSDGAKTLETAS------GHCAPVTCLALSSDSNFLVTGSQD------TT 2061 (2342)
Q Consensus 2000 t~VafSpDGklLASGS~-DG-----sIrVWDl~tgkll~tL~------GHt~~VtcLAfSPDG~~LaSGS~D------GT 2061 (2342)
...+|||||+.||.... ++ .|.+++..+++..+... .....+...+|+|||+.|+..... ..
T Consensus 44 ~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 123 (281)
T d1k32a2 44 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTC 123 (281)
T ss_dssp EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCE
T ss_pred cCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCcccee
Confidence 44789999998876542 22 47777887776544221 122346788999999998875432 12
Q ss_pred eEEEeccCCccccccccCCCCCCccccccCCCCCceee-cCCCccc-------------cccCCceEEecCCCCCeEEEE
Q 000085 2062 ILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANA-SADKSRR-------------RRIEGPIHVLRGHHREILCCC 2127 (2342)
Q Consensus 2062 VrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~-s~D~s~~-------------~~i~~~l~~L~GHs~~Vt~Va 2127 (2342)
+...+...+..... . .......+.+++...... ....... ............+........
T Consensus 124 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (281)
T d1k32a2 124 LYRVENDGINFVPL----N-LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPV 198 (281)
T ss_dssp EEEEEGGGTEEEEC----C-SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEE
T ss_pred eeeecCCCceeEEe----c-CCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceee
Confidence 33444443321111 1 111112223333322221 1111000 000111222223334445555
Q ss_pred EecCCCEEEEEeCC--CcEEEEECCCCeEEEEEecCCcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeee
Q 000085 2128 VSSDLGVVVSCSDS--SDLLLHSIRRGRLIRRLVGVDAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVAR 2196 (2342)
Q Consensus 2128 fSPDg~lLaSGS~D--GtIrIWDLrTGklIrsL~gh~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s 2196 (2342)
++++. .+.....+ ..|.++|+.++...+...........+|+||+.++|.. ++.++++++.+.....
T Consensus 199 ~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 199 IVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEK 267 (281)
T ss_dssp EETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEE
T ss_pred eeccc-cceecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEEEe-CCEEEEEECCCCCEEE
Confidence 55543 22333333 35777888766644322233344557899999988864 6788888887654443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.03 E-value=0.018 Score=66.04 Aligned_cols=215 Identities=14% Similarity=0.114 Sum_probs=135.0
Q ss_pred EEEcC-CCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccC-
Q 000085 2002 VSITH-DKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIE- 2079 (2342)
Q Consensus 2002 VafSp-DGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~- 2079 (2342)
..|++ ++++..+--..+.|.-||..+++.. .+ .....+.++++.++|.++++ +.+ -+.++|..++.........
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~ 98 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES 98 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec
Confidence 44665 4445555556788999998887543 22 23456889999999877765 444 5888898886543221111
Q ss_pred --CCCCCccccccCCCCCceeecCCCc-----ccccc-CCceEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECC
Q 000085 2080 --PSSGMGTPGNSIGSSTPANASADKS-----RRRRI-EGPIHVLRGHHREILCCCVSSDLGVV-VSCSDSSDLLLHSIR 2150 (2342)
Q Consensus 2080 --~~~~V~svs~SpDG~~Las~s~D~s-----~~~~i-~~~l~~L~GHs~~Vt~VafSPDg~lL-aSGS~DGtIrIWDLr 2150 (2342)
.......+.+.++|...+....... ..+.. ...+..+...-...+.++|+++++.+ ++-+..+.|..+++.
T Consensus 99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence 1123455667788876655433211 11111 12222222233456789999998865 566677889988874
Q ss_pred C------CeEE--EEEecC--CcEEEEEecCCcEEEEEeCCCeEEEEEeCCceeeeecCCCCCCeEEEEEc-cCCCEEEE
Q 000085 2151 R------GRLI--RRLVGV--DAHAVSLSSEGVIMTWNKLQHTLSSFTLNGVLVARAKLPLSGSIGCMEIS-LDGHSALI 2219 (2342)
Q Consensus 2151 T------GklI--rsL~gh--~vssLSfSpDG~IlVwdssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafS-PDGk~LaS 2219 (2342)
. ++.. ..+.+. ....+++..+|.+.+.....+.|..|+.+|+.+.....+. ..+++++|- +|.+.|++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~-~~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 179 ARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPG-KQTTCPAFIGPDASRLLV 257 (295)
T ss_dssp TTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSC-SBEEEEEEESTTSCEEEE
T ss_pred ccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCC-CceEEEEEeCCCCCEEEE
Confidence 2 1111 111111 2567899999998888778899999999998888776653 468999996 67777765
Q ss_pred Ee
Q 000085 2220 GV 2221 (2342)
Q Consensus 2220 GS 2221 (2342)
.+
T Consensus 258 Tt 259 (295)
T d2ghsa1 258 TS 259 (295)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.72 E-value=0.11 Score=60.19 Aligned_cols=222 Identities=9% Similarity=0.007 Sum_probs=116.2
Q ss_pred EEEcCCCCEEEEEEcCC-----------cEEEEecCCccccee---cccCCCCeEEEEecCCCCEEEEEeCC-CceEEEe
Q 000085 2002 VSITHDKEIITGGHVDG-----------SIKLLTSDGAKTLET---ASGHCAPVTCLALSSDSNFLVTGSQD-TTILLWR 2066 (2342)
Q Consensus 2002 VafSpDGklLASGS~DG-----------sIrVWDl~tgkll~t---L~GHt~~VtcLAfSPDG~~LaSGS~D-GTVrVWD 2066 (2342)
.+...+|++++.|+.+. .+.+||..+++-... ...|.......++.++|++++.|+.+ .++.+||
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd 104 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 104 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence 55677899888888532 377999998764332 12233333456788999999998766 5899999
Q ss_pred ccCCccccccccCCCCCCccccccCCCCCceeecCCCc-------cccccCCce-----------EEecCCC-----CCe
Q 000085 2067 IHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-------RRRRIEGPI-----------HVLRGHH-----REI 2123 (2342)
Q Consensus 2067 l~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-------~~~~i~~~l-----------~~L~GHs-----~~V 2123 (2342)
..+..............-...+..+||+.++.+..... ..++..... .....+. +.-
T Consensus 105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (387)
T d1k3ia3 105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH 184 (387)
T ss_dssp GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccce
Confidence 98754322211112222234455567777666553211 111111100 0000010 011
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEec--C---------CcEEEEEecCCcEEEEEeCCC--------eE
Q 000085 2124 LCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVG--V---------DAHAVSLSSEGVIMTWNKLQH--------TL 2184 (2342)
Q Consensus 2124 t~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~g--h---------~vssLSfSpDG~IlVwdssdG--------sI 2184 (2342)
..+...++++.++.++.++.+.++|..+......-.. . ....+....+|++++++.... ..
T Consensus 185 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~ 264 (387)
T d1k3ia3 185 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNA 264 (387)
T ss_dssp CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCE
T ss_pred eEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCccccee
Confidence 1122345778888888888888888877754432211 0 112233345778888775321 22
Q ss_pred EEEEeCC---c-eeeeec--CCCCCCeEEEEEccCCCEEEEEeCC
Q 000085 2185 SSFTLNG---V-LVARAK--LPLSGSIGCMEISLDGHSALIGVNS 2223 (2342)
Q Consensus 2185 ~I~dlnG---~-~L~s~~--~~Hs~~ItsLafSPDGk~LaSGS~D 2223 (2342)
.++++.. . ...... .++...-.+....+||+.+++|+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~ 309 (387)
T d1k3ia3 265 HIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 309 (387)
T ss_dssp EEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred ecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcc
Confidence 2232211 0 000000 1122233456667899999988743
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.17 E-value=0.37 Score=54.72 Aligned_cols=215 Identities=10% Similarity=0.043 Sum_probs=125.4
Q ss_pred EEecCC-CCEEEEEeCCCceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCccccccC-CceEEecC---
Q 000085 2044 LALSSD-SNFLVTGSQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIE-GPIHVLRG--- 2118 (2342)
Q Consensus 2044 LAfSPD-G~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~-~~l~~L~G--- 2118 (2342)
..|++. +.+..+--..+.|..||..++.... ...+..+.++.+..+|..+++. .++...++.. .....+..
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~---~~~~~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~~l~~~~~ 98 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTV---HALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELES 98 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---EECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSST
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEE---EECCCCcEEEEEecCCCEEEEE-eCccEEeecccceeeEEeeeec
Confidence 345543 3333333345566666666543211 1122344556666677665543 4455444432 22222221
Q ss_pred --CCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCeEEEEEecC-CcEEEEEecCCcEEEE-EeCCCeEEEEEeC
Q 000085 2119 --HHREILCCCVSSDLGVVVSCSD----SSDLLLHSIRRGRLIRRLVGV-DAHAVSLSSEGVIMTW-NKLQHTLSSFTLN 2190 (2342)
Q Consensus 2119 --Hs~~Vt~VafSPDg~lLaSGS~----DGtIrIWDLrTGklIrsL~gh-~vssLSfSpDG~IlVw-dssdGsI~I~dln 2190 (2342)
....++.+.+.++|++.++... .+.-.+|.+..++....+... ....+++++++..++| +...+.|..|+++
T Consensus 99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence 1235788999999997766543 234566777777665555432 3567899999986554 4567889888875
Q ss_pred Cce--------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccC
Q 000085 2191 GVL--------VARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDF 2262 (2342)
Q Consensus 2191 G~~--------L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias 2262 (2342)
... +........+....+++..+|++.++.-
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~----------------------------------------- 217 (295)
T d2ghsa1 179 ARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----------------------------------------- 217 (295)
T ss_dssp TTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-----------------------------------------
T ss_pred ccccccccceEEEeccCcccccccceEEcCCCCEEeeee-----------------------------------------
Confidence 311 0001111344577888888888776542
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEe-cCCCEEEEEe
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALN-KDNTNLLVST 2305 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafS-PDG~~LaSGS 2305 (2342)
..+.|..||. .++.+..+... ...+++++|- +|.+.|++.+
T Consensus 218 ~~g~V~~~dp-~G~~~~~i~lP-~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 218 GEGAVDRYDT-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TTTEEEEECT-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEE
T ss_pred CCCceEEecC-CCcEeeEecCC-CCceEEEEEeCCCCCEEEEEE
Confidence 1457888995 67888888743 3468999996 6777776544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.17 E-value=2.4 Score=52.49 Aligned_cols=54 Identities=17% Similarity=-0.076 Sum_probs=38.6
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPAL 2318 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sL 2318 (2342)
..|.|.-+|+.|++.+.+...+. +..+-.++-.+..+++|+.||.++.+|..+.
T Consensus 442 ~~G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~Da~tG 495 (571)
T d2ad6a1 442 EMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcccEEEeccCCCceeeEcCCCC--CCCcceeEecCCEEEEECCCCeEEEEECCCC
Confidence 35789999999999998876332 2222222334567888999999999997655
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.31 E-value=9.5 Score=44.74 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=38.7
Q ss_pred EEEEEcCCCCEEEEEE-cCC----cEEEEecCCcccce-ecccCCCCeEEEEecCCCCEEEEEeC
Q 000085 2000 AVVSITHDKEIITGGH-VDG----SIKLLTSDGAKTLE-TASGHCAPVTCLALSSDSNFLVTGSQ 2058 (2342)
Q Consensus 2000 t~VafSpDGklLASGS-~DG----sIrVWDl~tgkll~-tL~GHt~~VtcLAfSPDG~~LaSGS~ 2058 (2342)
..+++|||+++++.+- .+| .|+++|+.+|+.+. .+.. .....++|++|++.|+-...
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~ 190 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAY 190 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEEC
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEe
Confidence 3467899999877543 333 69999999998664 2221 11246789999988775543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.30 E-value=2.4 Score=52.27 Aligned_cols=42 Identities=2% Similarity=0.029 Sum_probs=29.5
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC-EEEEE
Q 000085 2263 PSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT-NLLVS 2304 (2342)
Q Consensus 2263 ~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~-~LaSG 2304 (2342)
.||.++.+|..+|+.+..+..+....-.-+.+..||+ +|++.
T Consensus 477 ~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~ 519 (560)
T d1kv9a2 477 AAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIM 519 (560)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 5899999999999999998864432222355666885 44443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.85 E-value=11 Score=41.38 Aligned_cols=217 Identities=10% Similarity=-0.009 Sum_probs=126.0
Q ss_pred CCcEEEEecCCcccc-----eecccCCCCeEEEEecCCCCEEEEE-eCCCceEEEeccCCccccccccCCCCCCcccccc
Q 000085 2017 DGSIKLLTSDGAKTL-----ETASGHCAPVTCLALSSDSNFLVTG-SQDTTILLWRIHRAFTSRTGTIEPSSGMGTPGNS 2090 (2342)
Q Consensus 2017 DGsIrVWDl~tgkll-----~tL~GHt~~VtcLAfSPDG~~LaSG-S~DGTVrVWDl~tg~~i~t~~~~~~~~V~svs~S 2090 (2342)
.+.|+-.+++..... ..+..+...+.+++|.+..+.|+-. ..++.|...++.....
T Consensus 9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~------------------ 70 (263)
T d1npea_ 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP------------------ 70 (263)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC------------------
T ss_pred CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc------------------
Confidence 356776776543321 1233445567889998776666544 4456666666554211
Q ss_pred CCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCeEEEEEec--CCcEEEE
Q 000085 2091 IGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVV-SCSDSSDLLLHSIRRGRLIRRLVG--VDAHAVS 2167 (2342)
Q Consensus 2091 pDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLa-SGS~DGtIrIWDLrTGklIrsL~g--h~vssLS 2167 (2342)
...+......+.++++..-++.|+ +-...+.|.+.++........+.. .....++
T Consensus 71 ----------------------~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~ 128 (263)
T d1npea_ 71 ----------------------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIV 128 (263)
T ss_dssp ----------------------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred ----------------------EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEE
Confidence 111122224578889987666665 545677899999875543222222 3467899
Q ss_pred EecCCcEEEEEeCC---CeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCc
Q 000085 2168 LSSEGVIMTWNKLQ---HTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGT 2244 (2342)
Q Consensus 2168 fSpDG~IlVwdssd---GsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~ 2244 (2342)
+.|.+..+.|.... ..|...+++|..........-....++++.+.++.|.....
T Consensus 129 vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~---------------------- 186 (263)
T d1npea_ 129 TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---------------------- 186 (263)
T ss_dssp EETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET----------------------
T ss_pred EecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC----------------------
Confidence 99988888887543 24665666765433333223356789999988887765421
Q ss_pred cccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCC
Q 000085 2245 EDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVFTDPA 2317 (2342)
Q Consensus 2245 iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~s 2317 (2342)
..+.|...|+........+. +-. ...+|++. +.+|+.. ...+.|...+..+
T Consensus 187 ------------------~~~~I~~~~~~g~~~~~v~~-~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~ 238 (263)
T d1npea_ 187 ------------------GTHRAECLNPAQPGRRKVLE-GLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAI 238 (263)
T ss_dssp ------------------TTTEEEEEETTEEEEEEEEE-CCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred ------------------CCCEEEEEECCCCCeEEEEC-CCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCC
Confidence 13567777776544433333 322 24577775 4445544 4667777777543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=91.09 E-value=19 Score=44.23 Aligned_cols=54 Identities=11% Similarity=-0.124 Sum_probs=40.1
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
-|.|.-||+.+++.+.... +..++.+-.++-.|..++.|+.||.++.+|..+.+
T Consensus 452 ~G~l~A~D~~TG~~~W~~~--~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe 505 (596)
T d1w6sa_ 452 LGQIKAYNAITGDYKWEKM--ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (596)
T ss_dssp CEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEeCCCCceecccC--CCCCCccceeEecCCEEEEECCCCeEEEEECCCCc
Confidence 4789999999999988765 33333333344567788889999999999976653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=91.05 E-value=15 Score=41.25 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=47.9
Q ss_pred EEEEcCCCCEEEEEEcC-CcEEEEecCCccccee--cccCCCCeEEEEecCCCCEEEEEeCC------CceEEEeccCCc
Q 000085 2001 VVSITHDKEIITGGHVD-GSIKLLTSDGAKTLET--ASGHCAPVTCLALSSDSNFLVTGSQD------TTILLWRIHRAF 2071 (2342)
Q Consensus 2001 ~VafSpDGklLASGS~D-GsIrVWDl~tgkll~t--L~GHt~~VtcLAfSPDG~~LaSGS~D------GTVrVWDl~tg~ 2071 (2342)
..++.++|++++.|+.+ .++.+||..+..-... +.... .-.+++..+||++++.|+.+ ..+.+||..+..
T Consensus 80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 46788999999988755 5899999887643321 11111 12345667799999988753 368889987753
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=90.93 E-value=5.2 Score=49.21 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=40.5
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
-|.|.-||+.+++.+..... ..+..+=..+-.|..|++|+.||.++.||..+.+
T Consensus 456 ~G~l~AiD~~tGk~~W~~~~--~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe 509 (573)
T d1kb0a2 456 FGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (573)
T ss_dssp EEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cccEEEeCCCCCceEeeecC--CCCCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence 46899999999999988873 2233222344567788899999999999977663
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.72 E-value=14 Score=40.49 Aligned_cols=216 Identities=9% Similarity=-0.008 Sum_probs=128.0
Q ss_pred eeEEEEEcCCCCEEEEE-EcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEE-EEeCCCceEEEeccCCccccc
Q 000085 1998 SSAVVSITHDKEIITGG-HVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLV-TGSQDTTILLWRIHRAFTSRT 2075 (2342)
Q Consensus 1998 Svt~VafSpDGklLASG-S~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~La-SGS~DGTVrVWDl~tg~~i~t 2075 (2342)
.+..++|...++.|... ..++.|+..+++++.....+......+.++++..-+..|+ +-...+.|.+.++.....
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~--- 113 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--- 113 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE---
Confidence 34558888877766554 4567788888876655544444445788999976565555 445566777777664211
Q ss_pred cccCCCCCCccccccCCCCCceeecCCCccccccCCceEEecCCCCCeEEEEEecCCCEEEEEeCC-Cc--EEEEECCCC
Q 000085 2076 GTIEPSSGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGHHREILCCCVSSDLGVVVSCSDS-SD--LLLHSIRRG 2152 (2342)
Q Consensus 2076 ~~~~~~~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GHs~~Vt~VafSPDg~lLaSGS~D-Gt--IrIWDLrTG 2152 (2342)
...+......+..++++|...+++-.... +. |..-++...
T Consensus 114 -------------------------------------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~ 156 (263)
T d1npea_ 114 -------------------------------------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156 (263)
T ss_dssp -------------------------------------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred -------------------------------------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC
Confidence 00111222456788888877766544322 23 444455332
Q ss_pred eEEEEEec---CCcEEEEEecCCcEEEEE-eCCCeEEEEEeCCceeeeecCCCCCCeEEEEEccCCCEEEEEeCCCCCCC
Q 000085 2153 RLIRRLVG---VDAHAVSLSSEGVIMTWN-KLQHTLSSFTLNGVLVARAKLPLSGSIGCMEISLDGHSALIGVNSSSTNN 2228 (2342)
Q Consensus 2153 klIrsL~g---h~vssLSfSpDG~IlVwd-ssdGsI~I~dlnG~~L~s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~ 2228 (2342)
.. ..+.. .....+++.+.+..+.|. ...+.|...+++|........+. ....+|++. +.+|.....
T Consensus 157 ~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~--~~~lYwtd~------ 226 (263)
T d1npea_ 157 NR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDW------ 226 (263)
T ss_dssp CC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEEET------
T ss_pred Cc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE--CCEEEEEEC------
Confidence 22 22222 235789998877766665 56688988888876544333222 234567665 445554421
Q ss_pred CCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecC
Q 000085 2229 GSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKD 2297 (2342)
Q Consensus 2229 ~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPD 2297 (2342)
..++|...|..+++.+..+.........++++.++
T Consensus 227 ----------------------------------~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 227 ----------------------------------KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp ----------------------------------TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred ----------------------------------CCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence 14678888998888877765333444556665544
|
| >d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: GRAM domain domain: Myotubularin-related protein 2, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=1.1 Score=45.00 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=64.2
Q ss_pred CceEEEEee-eeEeee-eeeeEEEEEEEeeEEEEEeCCCCCCCCCCccccccccceEeeccceeEEeecccc----Cccc
Q 000085 1472 DERIVFELP-SSMVRP-LRVIRGTFQVTTRRINFIVDNTESPEEGTSELRNQEKDRSWLMSSLHQIYSRRYL----LRRS 1545 (2342)
Q Consensus 1472 ~EkVils~~-c~mVtP-l~v~~G~L~IT~~~LyF~vd~~~~~~~~~~~~~~~~k~~~~~~~~I~~i~~Rr~~----l~~~ 1545 (2342)
+|.++...+ +.++.| ..-+.|+|.+|+.+|+|.....+.. .....++..|..|.+..-. -...
T Consensus 8 GE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~~~~-----------~~~~ipl~~I~~v~k~~~~~~~~~~~~ 76 (125)
T d1zsqa1 8 GENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPP-----------FVLDASLGVINRVEKIGGASSRGENSY 76 (125)
T ss_dssp TCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSC-----------EEEEEEGGGEEEEEEECCTTCCSTTCS
T ss_pred CcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCCCcc-----------EEEEeccceeeeeeecccccccCCccc
Confidence 455554432 234444 2457999999999999985432110 1234567777777654321 2235
Q ss_pred EEEEEEeCCceEEEEcC-ChhhHHHHHHHHHhcCC
Q 000085 1546 ALELFMVDRSNFFFDFG-STEGRRNAYRAIVQARP 1579 (2342)
Q Consensus 1546 alEif~~~~~s~f~~F~-~~~~~~~~~~~i~~~~~ 1579 (2342)
+|+|..+|.+.+=|.|. ...+++++++.|.+..-
T Consensus 77 ~L~I~CKDfr~~~f~f~~e~~~~~~v~~~L~~~a~ 111 (125)
T d1zsqa1 77 GLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAF 111 (125)
T ss_dssp EEEEEETTTEEEEEECCGGGCCHHHHHHHHHHHSC
T ss_pred cEEEEeccCeEEEEEEcCCccHHHHHHHHHHHhCc
Confidence 89999999999999995 44667889999988753
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.58 E-value=17 Score=41.20 Aligned_cols=226 Identities=13% Similarity=0.157 Sum_probs=130.8
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEecCCcccceecccCCCCeEEEEecCCCCEEEEEeCCCceEEEeccCCccccccccCCC
Q 000085 2002 VSITHDKEIITGGHVDGSIKLLTSDGAKTLETASGHCAPVTCLALSSDSNFLVTGSQDTTILLWRIHRAFTSRTGTIEPS 2081 (2342)
Q Consensus 2002 VafSpDGklLASGS~DGsIrVWDl~tgkll~tL~GHt~~VtcLAfSPDG~~LaSGS~DGTVrVWDl~tg~~i~t~~~~~~ 2081 (2342)
.-.+|..++||--+ ..+++|+|+++.+.++.+.-.. .|.--.|-.+ +.|+-.+ +..|.=|+++....
T Consensus 68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~--------- 134 (327)
T d1utca2 68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQ--------- 134 (327)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-SEEEEEC-SSEEEEEESSSSCC---------
T ss_pred hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCC-CEEEEEc-CCceEEEcccCCCC---------
Confidence 44678888888765 6789999999988887766444 5666777644 3444333 46799999854211
Q ss_pred CCCccccccCCCCCceeecCCCccccccCCceEEecCC----CCCeEEEEEecCCCEEEEEe---C----CCcEEEEECC
Q 000085 2082 SGMGTPGNSIGSSTPANASADKSRRRRIEGPIHVLRGH----HREILCCCVSSDLGVVVSCS---D----SSDLLLHSIR 2150 (2342)
Q Consensus 2082 ~~V~svs~SpDG~~Las~s~D~s~~~~i~~~l~~L~GH----s~~Vt~VafSPDg~lLaSGS---~----DGtIrIWDLr 2150 (2342)
|...+.-| ...|..-..+++.++++..+ . .|.+.+|..+
T Consensus 135 ------------------------------P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e 184 (327)
T d1utca2 135 ------------------------------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 184 (327)
T ss_dssp ------------------------------CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred ------------------------------chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence 11111111 23344445555555554322 1 3678888875
Q ss_pred CCeEEEEEecCCcEEEEEecCCc-----EEEEEe---CCCeEEEEEeCCcee---------eeecCC---CCCCeEEEEE
Q 000085 2151 RGRLIRRLVGVDAHAVSLSSEGV-----IMTWNK---LQHTLSSFTLNGVLV---------ARAKLP---LSGSIGCMEI 2210 (2342)
Q Consensus 2151 TGklIrsL~gh~vssLSfSpDG~-----IlVwds---sdGsI~I~dlnG~~L---------~s~~~~---Hs~~ItsLaf 2210 (2342)
. +.-+.+++|......+--+|. ++.+.. ..+++++.++..... ....++ -.+-..++.+
T Consensus 185 r-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv 263 (327)
T d1utca2 185 R-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 263 (327)
T ss_dssp T-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE
T ss_pred c-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe
Confidence 4 455667777665555544432 333322 225677777642110 011111 1233344444
Q ss_pred ccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccccccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeE
Q 000085 2211 SLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLASDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDIT 2290 (2342)
Q Consensus 2211 SPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~It 2290 (2342)
|+....+..-+ .-|-|++||+.|+.+++.-. -....|.
T Consensus 264 s~kygiiyviT-----------------------------------------K~G~i~lyDleTgt~i~~nR-Is~~~iF 301 (327)
T d1utca2 264 SEKHDVVFLIT-----------------------------------------KYGYIHLYDLETGTCIYMNR-ISGETIF 301 (327)
T ss_dssp ETTTTEEEEEE-----------------------------------------TTSEEEEEETTTCCEEEEEE-CCSSCEE
T ss_pred eccCCEEEEEe-----------------------------------------cCcEEEEEEcccccEEEEee-cCCCceE
Confidence 44443333332 24779999999999998877 4456677
Q ss_pred EEEEecCCCEEEEEeCCCcEEEE
Q 000085 2291 ALALNKDNTNLLVSTADKQLIVF 2313 (2342)
Q Consensus 2291 sLafSPDG~~LaSGSsDGsIrVW 2313 (2342)
..+-..+..-+++...+|.|.--
T Consensus 302 ~~a~~~~~~Gi~~VNr~GqVl~v 324 (327)
T d1utca2 302 VTAPHEATAGIIGVNRKGQVLSV 324 (327)
T ss_dssp EEEEETTTTEEEEEETTSEEEEE
T ss_pred EeccCCCCceEEEECCCCeEEEE
Confidence 66666665567777778876543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=90.09 E-value=26 Score=42.52 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=40.7
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 000085 2264 SPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVSTADKQLIVFTDPALS 2319 (2342)
Q Consensus 2264 DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSGSsDGsIrVWDi~sLs 2319 (2342)
.|.|.-||+.+++.+.....+ .+..+-.++-.+..+++|+.||.++.+|..+.+
T Consensus 437 ~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe 490 (560)
T d1kv9a2 437 SGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (560)
T ss_dssp EEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence 578999999999999887732 333333344456788899999999999977653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.74 E-value=21 Score=43.68 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=30.4
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCC-EEEE
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNT-NLLV 2303 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~-~LaS 2303 (2342)
..||.++.+|.++|+.+..+..+....-.-+.|..||+ ||++
T Consensus 482 ~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 482 TLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence 36999999999999999998865443333366666885 4444
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.69 E-value=16 Score=41.41 Aligned_cols=193 Identities=9% Similarity=0.075 Sum_probs=100.5
Q ss_pred eecCCCeEEecCCCceEEEecCCCCCCCcccccccceeccccCcceeEEEEEcCCCCEEEEEEcCCcEEEEecCCc-ccc
Q 000085 1953 LFQHGKASASPASGTFLRMFKGPGGSGADEWHFPRALAFASSGIRSSAVVSITHDKEIITGGHVDGSIKLLTSDGA-KTL 2031 (2342)
Q Consensus 1953 lf~~Gk~LaSsSsD~tIRVwdg~tgs~~~ew~~p~sls~hs~gI~Svt~VafSpDGklLASGS~DGsIrVWDl~tg-kll 2031 (2342)
+.+..+.+++.-.+.++++|+..+..+.....++. .+..-.|-.+.. |+-- .+..|+-|++++. .+.
T Consensus 69 IMhP~~~IiALrag~~LQiFnletK~klks~~~~e----------~VvfWkWis~~~-L~lV-T~taVYHW~~~g~s~P~ 136 (327)
T d1utca2 69 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD----------DVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPV 136 (327)
T ss_dssp EECSSSSEEEEEETTEEEEEETTTTEEEEEEECSS----------CCCEEEESSSSE-EEEE-CSSEEEEEESSSSCCCE
T ss_pred hcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCC----------CcEEEEecCCCE-EEEE-cCCceEEEcccCCCCch
Confidence 33344444454457899999977633333332222 122245554444 3332 2678999999643 455
Q ss_pred eecccCC----CCeEEEEecCCCCEEEEEe---C----CCceEEEeccCCccccccccCCC------------CCCcccc
Q 000085 2032 ETASGHC----APVTCLALSSDSNFLVTGS---Q----DTTILLWRIHRAFTSRTGTIEPS------------SGMGTPG 2088 (2342)
Q Consensus 2032 ~tL~GHt----~~VtcLAfSPDG~~LaSGS---~----DGTVrVWDl~tg~~i~t~~~~~~------------~~V~svs 2088 (2342)
+.+..|. ..|..-..+++.++++-.+ . .|.+.+|..+...... ..+|. ....-++
T Consensus 137 k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~--ieGhaa~F~~~~~~g~~~~~~lf~ 214 (327)
T d1utca2 137 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP--IEGHAASFAQFKMEGNAEESTLFC 214 (327)
T ss_dssp EEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE--ECCSEEEEEEECCTTCSSCEEEEE
T ss_pred hhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc--ccceeeeeEEEEcCCCCCCceEEE
Confidence 5555554 4577777888888876432 2 3667788887642111 11111 1111111
Q ss_pred ccCCCC---Cc-eeecCC-CccccccCCc-eEEec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 000085 2089 NSIGSS---TP-ANASAD-KSRRRRIEGP-IHVLR---GHHREILCCCVSSDLGVVVSCSDSSDLLLHSIRRGRLIRRLV 2159 (2342)
Q Consensus 2089 ~SpDG~---~L-as~s~D-~s~~~~i~~~-l~~L~---GHs~~Vt~VafSPDg~lLaSGS~DGtIrIWDLrTGklIrsL~ 2159 (2342)
|...+. .+ +.-... ........+. +..+. .-.+-..++.+++....++.-++-|.+++||+.||.++..-+
T Consensus 215 fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR 294 (327)
T d1utca2 215 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 294 (327)
T ss_dssp EEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee
Confidence 111000 00 000000 0000000000 11111 113445678888888899999999999999999999886644
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=84.67 E-value=23 Score=43.54 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=28.8
Q ss_pred CCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCE-EE
Q 000085 2262 FPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTN-LL 2302 (2342)
Q Consensus 2262 s~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~-La 2302 (2342)
..||.++.+|..+|+.+..+..+....-.=+.|..||++ |+
T Consensus 491 ~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva 532 (596)
T d1w6sa_ 491 TLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA 532 (596)
T ss_dssp CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence 469999999999999999987543322222455568854 44
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=84.39 E-value=9 Score=45.54 Aligned_cols=187 Identities=11% Similarity=0.089 Sum_probs=111.9
Q ss_pred EEEcC---CCCEEEEEE-cCCcEEEEecCCcccceeccc-CCCCeEEEEec--CCCCEEEEEeCCC--------------
Q 000085 2002 VSITH---DKEIITGGH-VDGSIKLLTSDGAKTLETASG-HCAPVTCLALS--SDSNFLVTGSQDT-------------- 2060 (2342)
Q Consensus 2002 VafSp---DGklLASGS-~DGsIrVWDl~tgkll~tL~G-Ht~~VtcLAfS--PDG~~LaSGS~DG-------------- 2060 (2342)
+++.. ||++++... .++.|-+.|+++.++.+.+.. ....+..+... |+-.|++.++.+.
T Consensus 90 ~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~ 169 (459)
T d1fwxa2 90 MSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 169 (459)
T ss_dssp EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred ccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence 55554 888766554 778899999999887664432 23445666654 4556888777633
Q ss_pred ----ceEEEeccCCccccccccCCCCCCccccccCCCCCceeecCCCc-c-----------------cccc---------
Q 000085 2061 ----TILLWRIHRAFTSRTGTIEPSSGMGTPGNSIGSSTPANASADKS-R-----------------RRRI--------- 2109 (2342)
Q Consensus 2061 ----TVrVWDl~tg~~i~t~~~~~~~~V~svs~SpDG~~Las~s~D~s-~-----------------~~~i--------- 2109 (2342)
++.++|..+.+...... .......+.++++|+++++.+.+.- . .|..
T Consensus 170 ~y~~~~t~ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 170 NYVNVFTAVDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp -EEEEEEEEETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hcceEEEEEecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 25567777654433332 1234556788899988876654310 0 0000
Q ss_pred ---CCceEEecCC-------------CCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCe------------EEEEEe-
Q 000085 2110 ---EGPIHVLRGH-------------HREILCCCVSSDLGVVVSCS-DSSDLLLHSIRRGR------------LIRRLV- 2159 (2342)
Q Consensus 2110 ---~~~l~~L~GH-------------s~~Vt~VafSPDg~lLaSGS-~DGtIrIWDLrTGk------------lIrsL~- 2159 (2342)
-..+.++.+. ......+.++|||++++.++ .+.++.|+|++.-. ......
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 0011111111 12345788999999986555 68999999996311 111111
Q ss_pred cCCcEEEEEecCCcEEEEEeCCCeEEEEEeC
Q 000085 2160 GVDAHAVSLSSEGVIMTWNKLQHTLSSFTLN 2190 (2342)
Q Consensus 2160 gh~vssLSfSpDG~IlVwdssdGsI~I~dln 2190 (2342)
+-+....+|+..|.....-.-+.++.-|++.
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecc
Confidence 1234567888888766655678889999874
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=83.32 E-value=4.9 Score=46.36 Aligned_cols=166 Identities=9% Similarity=0.088 Sum_probs=90.5
Q ss_pred EEEEEecCCCEEEEEeC------------CCcEEEEECCCCeE-EEE--EecC-------CcE--EEEEecCCcEEEEEe
Q 000085 2124 LCCCVSSDLGVVVSCSD------------SSDLLLHSIRRGRL-IRR--LVGV-------DAH--AVSLSSEGVIMTWNK 2179 (2342)
Q Consensus 2124 t~VafSPDg~lLaSGS~------------DGtIrIWDLrTGkl-Irs--L~gh-------~vs--sLSfSpDG~IlVwds 2179 (2342)
-.++..|+|..+++++. .|.|.++|+.+... ... +.+. ... .+--..||.+.++-.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 35777788877666542 48999999876532 111 2211 012 223356777655542
Q ss_pred ----CCCeEEEEEeC--Cceee---eecCCCCCCeEEEEEccCCCEEEEEeCCCCCCCCCcccccccCCCCCCccccccc
Q 000085 2180 ----LQHTLSSFTLN--GVLVA---RAKLPLSGSIGCMEISLDGHSALIGVNSSSTNNGSYDNIQGLNSKQSGTEDFDLA 2250 (2342)
Q Consensus 2180 ----sdGsI~I~dln--G~~L~---s~~~~Hs~~ItsLafSPDGk~LaSGS~DGs~d~~i~d~Lw~l~~~~~~~iaFspd 2250 (2342)
...+|.+|.+. +..+. ....+.....+.+++..+|.+++|-. ..........+..
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd--~~~~~~~~~~~e~-------------- 181 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATND--HYFIDPYLKSWEM-------------- 181 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEES--CSCCSHHHHHHHH--------------
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecC--ccCcChhhhhhhH--------------
Confidence 34568888874 32222 11222345689999999999888642 1100000000000
Q ss_pred cccccCCCCccCCCCeEEEEECCCCeEEEEEecCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCC
Q 000085 2251 SDQSVDNNRFDFPSPSICFLDLHTLKVFHVLKLGEGQDITALALNKDNTNLLVS-TADKQLIVFTDPA 2317 (2342)
Q Consensus 2251 ~~~s~ss~~ias~DGsIrIWDL~Tgk~L~tL~lgHs~~ItsLafSPDG~~LaSG-SsDGsIrVWDi~s 2317 (2342)
.....-+.+..||....+.+ .. .-...+.|+++||+++|+++ +..++|++|+...
T Consensus 182 --------~~~~~~g~v~~~~~~~~~~~--~~--~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 182 --------HLGLAWSFVTYYSPNDVRVV--AE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp --------HTTCCCEEEEEECSSCEEEE--EE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred --------hhcCCceeEEEEcCCceEEE--cC--CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence 00011344555554433322 22 23457999999999888766 5678899998654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=81.30 E-value=16 Score=44.59 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=37.1
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---cEEEEEecCCcEEE
Q 000085 2129 SSDLGVVVSCSDSSDLLLHSIRRGRLIRRLVGVD---AHAVSLSSEGVIMT 2176 (2342)
Q Consensus 2129 SPDg~lLaSGS~DGtIrIWDLrTGklIrsL~gh~---vssLSfSpDG~IlV 2176 (2342)
+..+.+|++|+.||.++.+|.++|+.+.++.... ..-+++..||+.+|
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv 535 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 4468889999999999999999999999887533 23356667887443
|